BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019738
         (336 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CKD|A Chain A, Crystal Structure Of Ml2640 From Mycobacterium Leprae
 pdb|2CKD|B Chain B, Crystal Structure Of Ml2640 From Mycobacterium Leprae
 pdb|2UYO|A Chain A, Crystal Structure Of Ml2640c From Mycobacterium Leprae In
           An Hexagonal Crystal Form
 pdb|2UYQ|A Chain A, Crystal Structure Of Ml2640c From Mycobacterium Leprae In
           Complex With S-Adenosylmethionine
          Length = 310

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 13/121 (10%)

Query: 98  AIRTLWFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNCLKESDVFEVDFSQVLQVKT 157
           A+RT +FD+      N+      Q V+L +G+D+RAYRL+    + V+E+D  +VL  K+
Sbjct: 85  AVRTNFFDTYFN---NAVIDGIRQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKS 141

Query: 158 ALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQLSGYKPEKNTVWVLEGIIYY 217
             +          +H          V  D+R+ DW   L+ +G+ P   T W+ EG++ Y
Sbjct: 142 TTL---------AEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSARTAWLAEGLLMY 191

Query: 218 L 218
           L
Sbjct: 192 L 192


>pdb|3O7W|A Chain A, The Crystal Structure Of Human Leucine Carboxyl
           Methyltransferase 1
          Length = 294

 Score = 38.1 bits (87), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 14/141 (9%)

Query: 106 SQIEAALNSFNSREAQVVLLGAGMDTRAYRLN--CLKESDVFEVDFSQV-------LQVK 156
           SQ+  A         Q+V LGAGMDT  +RL    L  S  FEVDF  +       ++ K
Sbjct: 62  SQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLPSKYFEVDFPMIVTRKLHSIKCK 121

Query: 157 TALIQTAMEFGDEQQHPR----MTAKSLTTVAADIRE-NDWLEKLQLSGYKPEKNTVWVL 211
             L    +E   E         + +K    + AD+R+ ++  EKL+      +  T+ + 
Sbjct: 122 PPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIA 181

Query: 212 EGIIYYLLDIHAMQVLKLIAD 232
           E ++ Y+    +  +LK  A+
Sbjct: 182 ECVLVYMTPEQSANLLKWAAN 202


>pdb|3IEI|A Chain A, Crystal Structure Of Human Leucine
           Carboxylmethyltransferase-1 In Complex With S-Adenosyl
           Homocysteine
 pdb|3IEI|B Chain B, Crystal Structure Of Human Leucine
           Carboxylmethyltransferase-1 In Complex With S-Adenosyl
           Homocysteine
 pdb|3IEI|C Chain C, Crystal Structure Of Human Leucine
           Carboxylmethyltransferase-1 In Complex With S-Adenosyl
           Homocysteine
 pdb|3IEI|D Chain D, Crystal Structure Of Human Leucine
           Carboxylmethyltransferase-1 In Complex With S-Adenosyl
           Homocysteine
 pdb|3IEI|E Chain E, Crystal Structure Of Human Leucine
           Carboxylmethyltransferase-1 In Complex With S-Adenosyl
           Homocysteine
 pdb|3IEI|F Chain F, Crystal Structure Of Human Leucine
           Carboxylmethyltransferase-1 In Complex With S-Adenosyl
           Homocysteine
 pdb|3IEI|G Chain G, Crystal Structure Of Human Leucine
           Carboxylmethyltransferase-1 In Complex With S-Adenosyl
           Homocysteine
 pdb|3IEI|H Chain H, Crystal Structure Of Human Leucine
           Carboxylmethyltransferase-1 In Complex With S-Adenosyl
           Homocysteine
 pdb|3P71|T Chain T, Crystal Structure Of The Complex Of Lcmt-1 And Pp2a
          Length = 334

 Score = 38.1 bits (87), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 14/141 (9%)

Query: 106 SQIEAALNSFNSREAQVVLLGAGMDTRAYRLN--CLKESDVFEVDFSQV-------LQVK 156
           SQ+  A         Q+V LGAGMDT  +RL    L  S  FEVDF  +       ++ K
Sbjct: 78  SQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCK 137

Query: 157 TALIQTAMEFGDEQQHPR----MTAKSLTTVAADIRE-NDWLEKLQLSGYKPEKNTVWVL 211
             L    +E   E         + +K    + AD+R+ ++  EKL+      +  T+ + 
Sbjct: 138 PPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIA 197

Query: 212 EGIIYYLLDIHAMQVLKLIAD 232
           E ++ Y+    +  +LK  A+
Sbjct: 198 ECVLVYMTPEQSANLLKWAAN 218


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,718,113
Number of Sequences: 62578
Number of extensions: 370943
Number of successful extensions: 1047
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1045
Number of HSP's gapped (non-prelim): 4
length of query: 336
length of database: 14,973,337
effective HSP length: 99
effective length of query: 237
effective length of database: 8,778,115
effective search space: 2080413255
effective search space used: 2080413255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)