Query 019738
Match_columns 336
No_of_seqs 260 out of 1532
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 04:09:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019738.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019738hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2918 Carboxymethyl transfer 100.0 1.3E-44 2.8E-49 337.1 9.9 236 34-329 22-271 (335)
2 COG3315 O-Methyltransferase in 100.0 3.3E-41 7.1E-46 320.6 19.6 240 35-290 7-273 (297)
3 TIGR00027 mthyl_TIGR00027 meth 100.0 1.5E-41 3.2E-46 318.0 16.6 234 43-291 1-259 (260)
4 PF04072 LCM: Leucine carboxyl 100.0 1.4E-37 3.1E-42 276.7 11.4 173 46-231 1-183 (183)
5 PF04672 Methyltransf_19: S-ad 98.9 8.2E-09 1.8E-13 96.6 10.3 132 103-248 55-194 (267)
6 PRK15068 tRNA mo(5)U34 methylt 97.0 0.018 3.8E-07 55.9 14.2 153 107-283 113-276 (322)
7 PF00891 Methyltransf_2: O-met 97.0 0.0095 2.1E-07 54.8 11.3 102 118-249 100-204 (241)
8 TIGR02716 C20_methyl_CrtF C-20 96.7 0.018 3.8E-07 55.1 11.5 108 118-247 149-257 (306)
9 TIGR00740 methyltransferase, p 96.6 0.04 8.7E-07 50.6 12.9 107 119-247 54-164 (239)
10 PRK11036 putative S-adenosyl-L 96.5 0.043 9.4E-07 51.0 12.3 125 99-245 25-150 (255)
11 TIGR00452 methyltransferase, p 96.4 0.035 7.7E-07 53.7 11.5 160 99-282 104-274 (314)
12 PRK15451 tRNA cmo(5)U34 methyl 96.4 0.064 1.4E-06 49.7 12.7 107 119-247 57-167 (247)
13 PLN03075 nicotianamine synthas 96.3 0.13 2.8E-06 49.4 14.0 104 118-241 123-230 (296)
14 PRK11207 tellurite resistance 96.1 0.096 2.1E-06 46.9 12.0 107 119-248 31-138 (197)
15 PF12847 Methyltransf_18: Meth 96.1 0.082 1.8E-06 42.0 10.2 102 120-242 3-109 (112)
16 PF03848 TehB: Tellurite resis 96.1 0.069 1.5E-06 48.1 10.5 106 119-247 31-136 (192)
17 TIGR00477 tehB tellurite resis 96.0 0.13 2.8E-06 46.0 12.2 105 119-247 31-136 (195)
18 PRK12335 tellurite resistance 96.0 0.13 2.8E-06 48.9 12.6 103 120-246 122-225 (287)
19 PF13649 Methyltransf_25: Meth 95.9 0.033 7.1E-07 44.0 6.9 94 122-237 1-100 (101)
20 KOG2361 Predicted methyltransf 95.8 0.055 1.2E-06 50.3 9.0 141 121-279 74-235 (264)
21 PF12147 Methyltransf_20: Puta 95.8 0.29 6.3E-06 46.8 13.9 142 80-241 98-246 (311)
22 TIGR03587 Pse_Me-ase pseudamin 95.6 0.19 4E-06 45.5 11.3 111 110-250 36-148 (204)
23 PTZ00098 phosphoethanolamine N 95.5 0.28 6E-06 46.1 12.6 141 119-282 53-203 (263)
24 TIGR03438 probable methyltrans 95.3 0.39 8.4E-06 46.0 13.2 126 103-246 49-180 (301)
25 PF13847 Methyltransf_31: Meth 95.0 0.58 1.3E-05 39.6 12.2 106 119-246 4-112 (152)
26 KOG4300 Predicted methyltransf 94.5 0.16 3.4E-06 46.4 7.5 142 109-296 69-212 (252)
27 PLN02336 phosphoethanolamine N 94.3 0.42 9.2E-06 48.4 11.2 106 119-246 38-144 (475)
28 PF05401 NodS: Nodulation prot 93.6 0.62 1.3E-05 42.2 9.6 104 118-246 43-148 (201)
29 PF08241 Methyltransf_11: Meth 92.4 0.89 1.9E-05 34.2 7.8 92 123-240 1-93 (95)
30 smart00828 PKS_MT Methyltransf 92.3 1.6 3.4E-05 39.3 10.6 140 121-283 2-146 (224)
31 cd02440 AdoMet_MTases S-adenos 91.8 3.5 7.5E-05 30.5 10.5 98 122-241 2-101 (107)
32 PLN02244 tocopherol O-methyltr 91.7 1.7 3.7E-05 42.3 10.7 107 119-247 119-226 (340)
33 PLN02233 ubiquinone biosynthes 91.7 5.7 0.00012 37.1 13.9 110 119-248 74-186 (261)
34 PLN02396 hexaprenyldihydroxybe 91.7 2.2 4.8E-05 41.4 11.3 124 98-244 106-235 (322)
35 PRK06202 hypothetical protein; 91.0 3.6 7.7E-05 37.4 11.5 105 118-248 60-170 (232)
36 PRK11873 arsM arsenite S-adeno 90.3 2.8 6.1E-05 39.1 10.4 106 119-247 78-186 (272)
37 TIGR03840 TMPT_Se_Te thiopurin 90.1 4.6 0.0001 36.7 11.3 112 120-243 36-151 (213)
38 TIGR02021 BchM-ChlM magnesium 90.0 6.6 0.00014 35.3 12.3 95 119-237 56-151 (219)
39 TIGR03439 methyl_EasF probable 89.6 7.9 0.00017 37.6 13.1 116 119-247 77-201 (319)
40 PF08003 Methyltransf_9: Prote 89.6 8.2 0.00018 37.3 12.9 185 108-323 107-310 (315)
41 PRK13255 thiopurine S-methyltr 89.2 8.5 0.00018 35.1 12.3 144 120-279 39-188 (218)
42 TIGR02752 MenG_heptapren 2-hep 89.1 8.5 0.00018 34.7 12.3 106 119-247 46-154 (231)
43 KOG3178 Hydroxyindole-O-methyl 88.3 5.3 0.00012 39.1 10.8 103 118-249 177-280 (342)
44 PRK07580 Mg-protoporphyrin IX 88.3 9.8 0.00021 34.1 12.1 94 119-236 64-158 (230)
45 PRK11705 cyclopropane fatty ac 88.3 6.2 0.00013 39.2 11.6 101 119-246 168-269 (383)
46 PRK08317 hypothetical protein; 88.1 13 0.00029 32.9 12.8 103 119-245 20-125 (241)
47 PLN02585 magnesium protoporphy 87.5 13 0.00028 36.0 13.0 98 119-236 145-243 (315)
48 TIGR02072 BioC biotin biosynth 87.1 13 0.00027 33.2 12.1 100 119-245 35-136 (240)
49 TIGR01983 UbiG ubiquinone bios 86.6 8.4 0.00018 34.4 10.6 123 97-244 26-149 (224)
50 PF13489 Methyltransf_23: Meth 86.4 6 0.00013 32.9 9.0 109 104-247 9-118 (161)
51 PLN02336 phosphoethanolamine N 86.3 6.6 0.00014 39.8 10.8 139 119-281 267-414 (475)
52 PRK14103 trans-aconitate 2-met 86.3 4.5 9.8E-05 37.4 8.8 111 99-243 13-125 (255)
53 PRK01683 trans-aconitate 2-met 85.3 6.7 0.00015 36.1 9.5 95 119-242 32-128 (258)
54 smart00138 MeTrc Methyltransfe 85.3 11 0.00024 35.3 11.0 115 119-242 100-240 (264)
55 PF01209 Ubie_methyltran: ubiE 85.1 8.5 0.00018 35.5 10.0 108 119-249 48-158 (233)
56 COG2230 Cfa Cyclopropane fatty 84.7 8.4 0.00018 36.8 9.9 108 119-249 73-181 (283)
57 PRK10258 biotin biosynthesis p 84.6 8.4 0.00018 35.3 9.7 99 119-246 43-142 (251)
58 PF03291 Pox_MCEL: mRNA cappin 84.5 4.9 0.00011 39.2 8.4 138 97-242 43-184 (331)
59 TIGR01934 MenG_MenH_UbiE ubiqu 84.1 29 0.00062 30.5 12.9 104 119-247 40-146 (223)
60 PRK00811 spermidine synthase; 82.1 26 0.00057 33.1 12.2 115 118-236 76-214 (283)
61 PRK00121 trmB tRNA (guanine-N( 81.4 15 0.00032 32.9 9.8 104 119-241 41-153 (202)
62 COG4106 Tam Trans-aconitate me 81.3 3.5 7.6E-05 38.1 5.5 106 99-238 14-123 (257)
63 PLN02366 spermidine synthase 81.0 36 0.00079 32.8 12.9 114 118-235 91-228 (308)
64 PRK00216 ubiE ubiquinone/menaq 80.9 40 0.00087 30.0 12.7 107 119-247 52-161 (239)
65 PRK00536 speE spermidine synth 80.7 29 0.00064 32.7 11.8 119 113-236 68-194 (262)
66 PLN02490 MPBQ/MSBQ methyltrans 80.4 22 0.00047 34.9 11.2 138 119-282 114-257 (340)
67 KOG1975 mRNA cap methyltransfe 79.1 25 0.00055 34.5 10.8 110 119-239 118-232 (389)
68 PF08242 Methyltransf_12: Meth 78.7 0.52 1.1E-05 36.6 -0.5 95 123-238 1-97 (99)
69 PRK05134 bifunctional 3-demeth 77.9 28 0.00061 31.3 10.6 102 119-244 49-151 (233)
70 PF03059 NAS: Nicotianamine sy 77.1 16 0.00035 34.8 8.9 100 120-239 122-225 (276)
71 PF02353 CMAS: Mycolic acid cy 77.1 18 0.0004 34.2 9.3 104 119-245 63-167 (273)
72 PRK07402 precorrin-6B methylas 76.9 52 0.0011 28.9 12.0 99 119-243 41-141 (196)
73 PRK06922 hypothetical protein; 76.3 26 0.00056 37.5 10.9 107 119-245 419-538 (677)
74 PF01564 Spermine_synth: Sperm 76.0 47 0.001 30.9 11.6 115 118-236 76-214 (246)
75 PF05185 PRMT5: PRMT5 arginine 75.2 21 0.00046 36.3 9.8 117 99-236 161-289 (448)
76 TIGR00138 gidB 16S rRNA methyl 74.2 61 0.0013 28.5 12.1 113 98-243 26-141 (181)
77 PRK11188 rrmJ 23S rRNA methylt 73.9 38 0.00082 30.5 10.2 103 120-245 53-166 (209)
78 TIGR00406 prmA ribosomal prote 73.0 80 0.0017 29.8 12.7 121 95-246 140-261 (288)
79 PHA03412 putative methyltransf 72.7 3.5 7.6E-05 38.5 3.2 40 108-151 186-228 (241)
80 PF05724 TPMT: Thiopurine S-me 72.7 32 0.0007 31.4 9.5 148 119-280 38-189 (218)
81 TIGR00091 tRNA (guanine-N(7)-) 70.5 36 0.00078 30.1 9.1 104 119-240 17-128 (194)
82 PLN02823 spermine synthase 70.4 68 0.0015 31.4 11.7 119 113-236 99-245 (336)
83 TIGR00417 speE spermidine synt 69.6 88 0.0019 29.2 12.0 43 119-162 73-118 (270)
84 PRK04266 fibrillarin; Provisio 69.4 83 0.0018 28.8 11.5 99 119-242 73-174 (226)
85 PRK00107 gidB 16S rRNA methylt 69.3 82 0.0018 27.9 12.2 99 119-245 46-146 (187)
86 COG4301 Uncharacterized conser 67.6 95 0.0021 29.5 11.3 114 118-249 78-199 (321)
87 COG2226 UbiE Methylase involve 67.6 95 0.0021 28.9 11.5 108 119-249 52-161 (238)
88 PHA03411 putative methyltransf 67.0 5.6 0.00012 38.0 3.2 39 109-151 199-240 (279)
89 COG0421 SpeE Spermidine syntha 65.8 83 0.0018 30.0 11.0 118 114-236 73-213 (282)
90 KOG1500 Protein arginine N-met 65.0 27 0.00059 34.4 7.5 95 98-215 159-253 (517)
91 TIGR02469 CbiT precorrin-6Y C5 64.3 67 0.0015 25.1 10.7 100 119-244 20-121 (124)
92 TIGR00537 hemK_rel_arch HemK-r 63.5 97 0.0021 26.7 12.1 43 119-162 20-63 (179)
93 COG2227 UbiG 2-polyprenyl-3-me 63.2 49 0.0011 31.0 8.6 103 119-247 60-163 (243)
94 PRK00517 prmA ribosomal protei 62.3 84 0.0018 28.9 10.2 27 220-246 189-215 (250)
95 PRK04457 spermidine synthase; 61.5 92 0.002 29.1 10.4 42 119-161 67-111 (262)
96 PLN02781 Probable caffeoyl-CoA 60.5 1.4E+02 0.003 27.4 12.9 107 118-245 68-178 (234)
97 TIGR00755 ksgA dimethyladenosi 59.2 82 0.0018 29.0 9.6 58 119-191 30-88 (253)
98 PF06080 DUF938: Protein of un 58.9 75 0.0016 28.9 8.9 128 104-246 14-143 (204)
99 PTZ00146 fibrillarin; Provisio 58.0 1.3E+02 0.0029 28.9 10.9 100 120-242 134-235 (293)
100 PF00398 RrnaAD: Ribosomal RNA 57.3 1E+02 0.0022 28.6 9.9 92 100-217 15-107 (262)
101 PLN02589 caffeoyl-CoA O-methyl 57.1 1.6E+02 0.0035 27.4 11.1 108 118-246 79-191 (247)
102 TIGR00438 rrmJ cell division p 56.6 78 0.0017 27.5 8.6 101 119-242 33-144 (188)
103 PRK00377 cbiT cobalt-precorrin 54.8 1.5E+02 0.0032 26.1 11.0 102 119-245 41-145 (198)
104 PF10294 Methyltransf_16: Puta 53.9 39 0.00084 29.5 6.1 108 119-242 46-154 (173)
105 PRK13256 thiopurine S-methyltr 52.9 1.9E+02 0.0041 26.7 12.1 139 120-269 45-186 (226)
106 PRK03612 spermidine synthase; 52.4 1.8E+02 0.0039 30.2 11.6 44 113-158 293-339 (521)
107 smart00650 rADc Ribosomal RNA 51.7 88 0.0019 26.7 8.0 57 119-190 14-71 (169)
108 PF07091 FmrO: Ribosomal RNA m 48.3 29 0.00062 32.6 4.5 63 100-163 88-152 (251)
109 TIGR03534 RF_mod_PrmC protein- 48.0 2.1E+02 0.0045 25.7 12.0 59 119-189 88-148 (251)
110 PF05175 MTS: Methyltransferas 43.6 1.4E+02 0.0029 25.7 7.9 108 108-240 23-136 (170)
111 PRK13944 protein-L-isoaspartat 42.7 2.4E+02 0.0053 25.0 11.0 69 108-189 64-135 (205)
112 PRK10611 chemotaxis methyltran 42.0 27 0.00059 33.4 3.5 35 207-241 225-259 (287)
113 TIGR03533 L3_gln_methyl protei 40.8 3.2E+02 0.0069 25.8 12.4 74 103-189 108-183 (284)
114 PF01739 CheR: CheR methyltran 40.7 30 0.00064 31.1 3.3 55 178-241 118-172 (196)
115 PRK01581 speE spermidine synth 39.9 4E+02 0.0086 26.6 11.5 52 105-158 138-192 (374)
116 COG3897 Predicted methyltransf 39.8 2.3E+02 0.005 26.0 8.7 123 97-246 56-181 (218)
117 TIGR03704 PrmC_rel_meth putati 39.5 3.1E+02 0.0068 25.3 10.3 36 119-155 87-125 (251)
118 COG4262 Predicted spermidine s 38.7 98 0.0021 31.1 6.6 126 102-232 274-426 (508)
119 PRK15001 SAM-dependent 23S rib 37.8 4.2E+02 0.0091 26.4 12.2 101 120-240 230-336 (378)
120 COG0030 KsgA Dimethyladenosine 37.2 2.3E+02 0.005 26.7 8.8 60 119-193 31-91 (259)
121 PRK14121 tRNA (guanine-N(7)-)- 37.2 2.4E+02 0.0051 28.3 9.3 58 119-189 123-183 (390)
122 PRK14896 ksgA 16S ribosomal RN 37.1 90 0.002 28.9 6.1 58 119-191 30-88 (258)
123 PF01596 Methyltransf_3: O-met 36.4 3.2E+02 0.007 24.6 11.1 110 118-247 45-157 (205)
124 PRK00274 ksgA 16S ribosomal RN 36.2 2.1E+02 0.0046 26.7 8.5 57 119-191 43-100 (272)
125 KOG1499 Protein arginine N-met 34.2 90 0.0019 30.8 5.6 64 99-164 43-106 (346)
126 PF08123 DOT1: Histone methyla 33.8 3E+02 0.0066 24.8 8.8 111 119-242 43-156 (205)
127 TIGR02081 metW methionine bios 32.9 1.7E+02 0.0038 25.5 7.0 88 119-234 14-102 (194)
128 TIGR00080 pimt protein-L-isoas 32.2 2E+02 0.0042 25.7 7.3 59 119-189 78-139 (215)
129 PRK11088 rrmA 23S rRNA methylt 31.9 2.1E+02 0.0045 26.6 7.7 38 119-156 86-128 (272)
130 COG1352 CheR Methylase of chem 31.1 1.3E+02 0.0027 28.6 6.0 132 96-240 78-237 (268)
131 PLN02232 ubiquinone biosynthes 31.0 3.2E+02 0.0069 23.1 8.1 58 179-247 27-84 (160)
132 PRK14968 putative methyltransf 30.6 3.3E+02 0.0072 23.0 12.8 60 119-189 24-84 (188)
133 COG3580 Uncharacterized protei 29.5 40 0.00088 32.7 2.4 42 108-149 264-312 (351)
134 PTZ00338 dimethyladenosine tra 29.1 1.3E+02 0.0028 28.7 5.8 60 119-190 37-97 (294)
135 KOG3045 Predicted RNA methylas 27.8 2.6E+02 0.0057 26.8 7.3 96 110-248 173-268 (325)
136 COG2263 Predicted RNA methylas 27.5 1.4E+02 0.0031 27.0 5.3 57 120-190 47-105 (198)
137 PF13679 Methyltransf_32: Meth 27.0 2E+02 0.0043 23.8 6.1 32 118-149 25-61 (141)
138 PRK11805 N5-glutamine S-adenos 26.0 2.7E+02 0.0057 26.7 7.4 59 120-189 135-195 (307)
139 PRK13942 protein-L-isoaspartat 25.7 3.5E+02 0.0076 24.1 7.8 59 119-189 77-138 (212)
140 KOG3010 Methyltransferase [Gen 25.5 2.1E+02 0.0046 27.0 6.3 99 118-239 33-132 (261)
141 PRK08287 cobalt-precorrin-6Y C 24.1 4.6E+02 0.01 22.5 11.8 96 119-242 32-129 (187)
142 PRK11783 rlmL 23S rRNA m(2)G24 24.1 6.1E+02 0.013 27.3 10.4 106 119-240 539-652 (702)
143 COG0191 Fba Fructose/tagatose 23.9 1.8E+02 0.0038 28.0 5.6 58 178-235 16-75 (286)
144 PRK09489 rsmC 16S ribosomal RN 23.8 6.8E+02 0.015 24.4 12.1 97 120-241 198-300 (342)
145 PF14258 DUF4350: Domain of un 22.8 2.4E+02 0.0052 20.2 5.1 36 204-243 34-69 (70)
146 PRK03522 rumB 23S rRNA methylu 22.6 4E+02 0.0087 25.4 8.0 77 97-189 155-232 (315)
147 PRK05785 hypothetical protein; 22.6 2.6E+02 0.0056 25.3 6.4 39 119-157 52-91 (226)
148 COG2813 RsmC 16S RNA G1207 met 22.5 2.1E+02 0.0046 27.6 5.8 44 120-163 160-206 (300)
149 PF02390 Methyltransf_4: Putat 22.4 2.7E+02 0.0059 24.7 6.3 97 119-238 18-127 (195)
150 KOG0820 Ribosomal RNA adenine 22.0 2.3E+02 0.005 27.3 5.8 85 94-193 37-122 (315)
151 PLN02476 O-methyltransferase 21.9 6.9E+02 0.015 23.7 11.8 102 118-246 118-229 (278)
152 PRK04148 hypothetical protein; 21.6 2.5E+02 0.0053 23.8 5.5 52 120-191 18-71 (134)
153 KOG1271 Methyltransferases [Ge 21.0 1.6E+02 0.0034 26.9 4.3 62 121-193 70-133 (227)
154 PRK12738 kbaY tagatose-bisphos 20.7 2E+02 0.0044 27.5 5.3 57 178-234 16-73 (286)
155 COG4123 Predicted O-methyltran 20.1 3.1E+02 0.0067 25.7 6.3 73 105-189 32-106 (248)
No 1
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-44 Score=337.09 Aligned_cols=236 Identities=22% Similarity=0.274 Sum_probs=201.5
Q ss_pred ccccccchhHHHHHHHHHHHhhhcCCCCChhhhhhhcchhhhhhhhhcchhhhccccccchhhHHHHHHHHHHHHHHHHh
Q 019738 34 TIDAQWDYLQRTACQTAAGRAMWKHVIHDPLADLLAGETYLRNVHEKIKKDRLNNAREISGVILAIRTLWFDSQIEAALN 113 (336)
Q Consensus 34 ~v~~t~d~v~~Tal~~a~~RA~~~~~~~Dp~A~~f~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Rt~~iD~~v~~fl~ 113 (336)
.||.|+++.+..... |...||++||++..|+... ..++.|.+|+| |++|+..|+..|.+||.
T Consensus 22 ~vq~Tnddss~ck~~-----~~~~gy~~d~~~~~~~~~~-------~~rr~P~inRG------y~~R~~aI~~~v~~Fl~ 83 (335)
T KOG2918|consen 22 AVQGTNDDSSLCKRS-----ATKSGYWHDPFIKLFVPSK-------KARRAPEINRG------YWARTMAIRHAVRAFLE 83 (335)
T ss_pred hhhhccchhhhhhhH-----HHhcCCccCchhhhhcccc-------ccCCCceecch------hhHHHHHHHHHHHHHHH
Confidence 478888877633322 3345999999999999641 35788999986 89999999999999999
Q ss_pred hcCCCccEEEEeCCCCcchhhhhcc---CCCceEEEcchHHHHHHHHHHHHhhhccCC----------CCCCCccCCCcE
Q 019738 114 SFNSREAQVVLLGAGMDTRAYRLNC---LKESDVFEVDFSQVLQVKTALIQTAMEFGD----------EQQHPRMTAKSL 180 (336)
Q Consensus 114 ~~~~g~~QVV~LGaGlDTr~~RL~~---~~~~~~~EvD~P~vi~~K~~~l~~~~~~~~----------~~~~~~l~s~~y 180 (336)
+.. +++||||||||+||++|||.. ...+.|||||||+++++|..++.+.+..++ +..+..+++.+|
T Consensus 84 ~~~-~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y 162 (335)
T KOG2918|consen 84 QTD-GKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRY 162 (335)
T ss_pred hcC-CceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCce
Confidence 964 899999999999999999986 368999999999999999955555444221 124567889999
Q ss_pred EEEeccCCCChhhH-HhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccCcccccccCCeee
Q 019738 181 TTVAADIRENDWLE-KLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMNQPSTTLSSSIFH 259 (336)
Q Consensus 181 ~~i~~DL~d~~~~~-~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~~~~~~~~~a~f~ 259 (336)
++++|||+|.+.++ .|..+++|.+.||+||+||||+||+++++..||+|+++.|+. +.|+
T Consensus 163 ~~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~-------------------a~fv 223 (335)
T KOG2918|consen 163 HLIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFEN-------------------AHFV 223 (335)
T ss_pred eeeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCc-------------------ccEE
Confidence 99999999998775 788899999999999999999999999999999999999977 4688
Q ss_pred ecCCCcccccCCCCcceeeeccCCCcccccCCCCCccchhhhcccCCCCcCCCCCCCCCceeEEEEEeec
Q 019738 260 FSSDWPDRLLPTLGFSNVRLSQIGDPDAHFGLMNDPLNLFNKLRSLPRSVQTHPDDGTPCRRLYLVQASG 329 (336)
Q Consensus 260 ~~~d~~e~~~~~~gF~~~m~~~~~e~~~~f~~~~~pl~~~~~~~~~~~~~~~~p~~~~~~~R~~~~~~~~ 329 (336)
+| ||+.|+|+||++|+ .||.++++|| +++..|||+++|++||. --||.
T Consensus 224 ~Y----EQi~~~D~Fg~vM~-------~nlk~r~~~L----------~gle~y~s~Esq~~Rf~-~~Gw~ 271 (335)
T KOG2918|consen 224 NY----EQINPNDRFGKVML-------ANLKRRGCPL----------HGLETYNSIESQRSRFL-KAGWE 271 (335)
T ss_pred EE----eccCCCChHHHHHH-------HHHHhcCCCC----------chhhhcccHHHHHHHHH-hcCCc
Confidence 88 99999999999999 8999999999 89999999999999996 44454
No 2
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.3e-41 Score=320.58 Aligned_cols=240 Identities=29% Similarity=0.391 Sum_probs=184.3
Q ss_pred cccccchhHHHHHHHHHHHhhhc----CCCCChhhhhhhcchhhhhhhhhcchhhhccccc--cch--hhHHHHHHHHHH
Q 019738 35 IDAQWDYLQRTACQTAAGRAMWK----HVIHDPLADLLAGETYLRNVHEKIKKDRLNNARE--ISG--VILAIRTLWFDS 106 (336)
Q Consensus 35 v~~t~d~v~~Tal~~a~~RA~~~----~~~~Dp~A~~f~~~~~~~~~~~~i~~~~~~~~~~--~~~--~~~~~Rt~~iD~ 106 (336)
..+..++|+.|++.++++||++. +|++||||..|++..... ...+.. +....+. ... .++++|+++||+
T Consensus 7 ~~~~~~~v~~Tal~~a~~RA~es~~~~~L~~D~~A~~lv~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~a~Rtr~fD~ 83 (297)
T COG3315 7 SWDKLSGVGKTALIVAAARALESRKPDPLIDDPFAEELVRQGDDD--FTKLAD-PALALGGGDFLERMNFLAARTRYFDD 83 (297)
T ss_pred cchhhcchhHHHHHHHHHHHHHhcCCCcccCCHHHHHHHhhhHHH--HHHhcC-hhhhcccchhhhhhhhHHHHHHHHHH
Confidence 44566789999999999999983 799999999999843211 011110 1111110 001 258999999999
Q ss_pred HHHHHHhhcCCCccEEEEeCCCCcchhhhhccCCCceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEecc
Q 019738 107 QIEAALNSFNSREAQVVLLGAGMDTRAYRLNCLKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAAD 186 (336)
Q Consensus 107 ~v~~fl~~~~~g~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~D 186 (336)
.+++|+..+ .+|||+||||||||+||++++.+++|||||+|+|++.|+++|++.+...| .++++|++|
T Consensus 84 ~~~~~~~~g---~~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~---------~~~~~Va~D 151 (297)
T COG3315 84 FVRAALDAG---IRQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPP---------AHRRLVAVD 151 (297)
T ss_pred HHHHHHHhc---ccEEEEeccccccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCC---------ceEEEEecc
Confidence 999999974 78999999999999999999878999999999999999999999865433 589999999
Q ss_pred CCCChhhHHhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEecc-Cccccc----------cc-
Q 019738 187 IRENDWLEKLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFM-NQPSTT----------LS- 254 (336)
Q Consensus 187 L~d~~~~~~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~-~~~~~~----------~~- 254 (336)
|++.+|.++|.++|||+++||+||+|||+|||++++++++|+.|++.+++||. +++++. ...... ..
T Consensus 152 l~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (297)
T COG3315 152 LREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSR-VAFDYSLPGSLRDRLRRPAARKTMRG 230 (297)
T ss_pred ccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCce-EEEeccccHHHHhcccchhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999874 777774 222110 00
Q ss_pred ----CCeeeecCC---CcccccCCCCcceeeeccCCCcccccC
Q 019738 255 ----SSIFHFSSD---WPDRLLPTLGFSNVRLSQIGDPDAHFG 290 (336)
Q Consensus 255 ----~a~f~~~~d---~~e~~~~~~gF~~~m~~~~~e~~~~f~ 290 (336)
...+.+..+ +.+.+++.+||.........+..+.++
T Consensus 231 ~~~~~~e~~~~~~~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~ 273 (297)
T COG3315 231 EDLDRGELVYFGDDPAEIETWLAERGWRSTLNRTTEDLAARYG 273 (297)
T ss_pred cccccccceeccCCHHHHHHHHHhcCEEEEecCCcHHHHHHhC
Confidence 122334333 447778999998885433333333333
No 3
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=100.00 E-value=1.5e-41 Score=317.96 Aligned_cols=234 Identities=28% Similarity=0.389 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHhhhc----CCCCChhhhhhhcchhhhhh--hhhcchhhhccccc--cchhhHHHHHHHHHHHHHHHHhh
Q 019738 43 QRTACQTAAGRAMWK----HVIHDPLADLLAGETYLRNV--HEKIKKDRLNNARE--ISGVILAIRTLWFDSQIEAALNS 114 (336)
Q Consensus 43 ~~Tal~~a~~RA~~~----~~~~Dp~A~~f~~~~~~~~~--~~~i~~~~~~~~~~--~~~~~~~~Rt~~iD~~v~~fl~~ 114 (336)
+.||+++|++||+|. ++|+||+|..|+++...... ...+........+. ....++++|+++||+.+++|+++
T Consensus 1 ~~Tal~~a~~RA~es~r~~~l~~Dp~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rtr~~D~~i~~~~~~ 80 (260)
T TIGR00027 1 GRTALGVAAARAIETQRPDRLFRDPYAAAFLGAAGRAAMPLDGLLRADAGAYDGLLGGFADFIAVRTRFFDDFLLAAVAA 80 (260)
T ss_pred ChHHHHHHHHHHHHhCCCCcCcCChHHHHHhchhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 469999999999984 79999999999987543100 00000000000000 12346899999999999999986
Q ss_pred cCCCccEEEEeCCCCcchhhhhccCCCceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhH
Q 019738 115 FNSREAQVVLLGAGMDTRAYRLNCLKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLE 194 (336)
Q Consensus 115 ~~~g~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~ 194 (336)
|..|||+||||||||+||+.++.+++|||||+|+|++.|+++|++.+.. .++++++|++||+ .+|.+
T Consensus 81 ---g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~---------~~~~~~~v~~Dl~-~~w~~ 147 (260)
T TIGR00027 81 ---GIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAE---------PPAHRRAVPVDLR-QDWPA 147 (260)
T ss_pred ---CCcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCC---------CCCceEEeccCch-hhHHH
Confidence 4679999999999999999987689999999999999999999986432 2378999999999 79999
Q ss_pred HhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccCcccc--------------c-ccCCeee
Q 019738 195 KLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMNQPST--------------T-LSSSIFH 259 (336)
Q Consensus 195 ~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~~~~~--------------~-~~~a~f~ 259 (336)
.|..+|||+++||+||+|||+|||+++++++||+.+++.+++|| .+++|++++... . ..+.++.
T Consensus 148 ~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs-~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (260)
T TIGR00027 148 ALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGS-RLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLV 226 (260)
T ss_pred HHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCc-EEEEEeccccchhHHHHHHHHHHHhhhcccccccc
Confidence 99999999999999999999999999999999999999997766 488999875210 0 1223444
Q ss_pred ec--CCCcccccCCCCcceeeeccCCCcccccCC
Q 019738 260 FS--SDWPDRLLPTLGFSNVRLSQIGDPDAHFGL 291 (336)
Q Consensus 260 ~~--~d~~e~~~~~~gF~~~m~~~~~e~~~~f~~ 291 (336)
++ .++++.++..+||..... ++.|....|++
T Consensus 227 ~~~~~~~~~~~l~~~Gw~~~~~-~~~e~~~~y~r 259 (260)
T TIGR00027 227 FGIDRADVAEWLAERGWRASEH-TPGELARRYGR 259 (260)
T ss_pred cCCChhhHHHHHHHCCCeeecC-CHHHHHHHhCC
Confidence 44 467888999999999866 78777777765
No 4
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=100.00 E-value=1.4e-37 Score=276.69 Aligned_cols=173 Identities=31% Similarity=0.423 Sum_probs=134.8
Q ss_pred HHHHHHHHhhh----cCCCCChhhhhhhcchhhhhhhhhcchhhhc-c----ccccchhhHHHHHHHHHHHHHHHHhhcC
Q 019738 46 ACQTAAGRAMW----KHVIHDPLADLLAGETYLRNVHEKIKKDRLN-N----AREISGVILAIRTLWFDSQIEAALNSFN 116 (336)
Q Consensus 46 al~~a~~RA~~----~~~~~Dp~A~~f~~~~~~~~~~~~i~~~~~~-~----~~~~~~~~~~~Rt~~iD~~v~~fl~~~~ 116 (336)
|++++++||.+ .+||+||+|..|+++....... +.+... . .......++++|+++||+.+++|+++++
T Consensus 1 al~~~~~RA~~s~~~~~~~~Dp~A~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Rt~~iD~~v~~~i~~~~ 77 (183)
T PF04072_consen 1 ALITAAARAAESKRPDPYFEDPYAARLLSKLGRAWLK---DYDFSKFNAASARDPGINRGYAARTRYIDDAVREFIAKHP 77 (183)
T ss_dssp HHHHHHHHHHHHHHHHCSSHTCCCCHHHHCCCCHCC----B--SGHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCCCcccCCHhHHHHHccccccccc---chhhhcccccccccHHHHhHHHHHHHHHHHHHHHhhccCC
Confidence 68899999987 4899999999999876322100 000000 0 0011234699999999999999999886
Q ss_pred CCccEEEEeCCCCcchhhhhccCC-CceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHH
Q 019738 117 SREAQVVLLGAGMDTRAYRLNCLK-ESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEK 195 (336)
Q Consensus 117 ~g~~QVV~LGaGlDTr~~RL~~~~-~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~ 195 (336)
+.+|||+||||||||+||+.++. +++|||||+|+|++.|+++|++.....+ +++++|++|+++.+|.+.
T Consensus 78 -~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~---------~~~~~v~~Dl~~~~~~~~ 147 (183)
T PF04072_consen 78 -GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPP---------ANYRYVPADLRDDSWIDA 147 (183)
T ss_dssp -TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHH---------EESSEEES-TTSHHHHHH
T ss_pred -CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCC---------cceeEEeccccchhhHHH
Confidence 56799999999999999999854 8999999999999999999999854211 467789999999999999
Q ss_pred hhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHH
Q 019738 196 LQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIA 231 (336)
Q Consensus 196 L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~ 231 (336)
|.++||+++.||+||+|||++||+++++.++|++|+
T Consensus 148 L~~~g~~~~~ptl~i~Egvl~Yl~~~~~~~ll~~ia 183 (183)
T PF04072_consen 148 LPKAGFDPDRPTLFIAEGVLMYLSPEQVDALLRAIA 183 (183)
T ss_dssp HHHCTT-TTSEEEEEEESSGGGS-HHHHHHHHHHH-
T ss_pred HHHhCCCCCCCeEEEEcchhhcCCHHHHHHHHHHhC
Confidence 999999999999999999999999999999999985
No 5
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.90 E-value=8.2e-09 Score=96.62 Aligned_cols=132 Identities=15% Similarity=0.157 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhhcCCCccEEEEeCCCCcchh--hhhcc--CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCC
Q 019738 103 WFDSQIEAALNSFNSREAQVVLLGAGMDTRA--YRLNC--LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTA 177 (336)
Q Consensus 103 ~iD~~v~~fl~~~~~g~~QVV~LGaGlDTr~--~RL~~--~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s 177 (336)
|+.+.+ +++.... |+.|+|.||||+-|.. +.+.. .++.+++.||. |-|+++-+.+|..++.
T Consensus 55 Fl~RaV-r~la~~~-GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~------------ 120 (267)
T PF04672_consen 55 FLRRAV-RYLAEEA-GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR------------ 120 (267)
T ss_dssp HHHHHH-HHHHCTT----EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT------------
T ss_pred HHHHHH-HHHHHhc-CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC------------
Confidence 334444 5555532 7999999999999973 22211 24566666665 9999999999987631
Q ss_pred CcEEEEeccCCCChhh-H-HhhhcCCCCCCcEEEEeeccccccCh-HHHHHHHHHHHHhCCCceEEEEEeccCc
Q 019738 178 KSLTTVAADIRENDWL-E-KLQLSGYKPEKNTVWVLEGIIYYLLD-IHAMQVLKLIADKCNLVHTVLLADFMNQ 248 (336)
Q Consensus 178 ~~y~~i~~DL~d~~~~-~-~L~~~g~d~~~Ptl~i~EGvl~YL~~-~~~~~Ll~~l~~~~~~gs~~l~~D~~~~ 248 (336)
....+|.+|+++++-+ + .-....+|.++|+.+++-+||++++. ++...+++.+.+.+++||.+++......
T Consensus 121 g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 121 GRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp SEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred ccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 2378999999998654 3 12334589999999999999999976 8899999999999999998777766553
No 6
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.01 E-value=0.018 Score=55.88 Aligned_cols=153 Identities=16% Similarity=0.221 Sum_probs=87.7
Q ss_pred HHHHHHhhcCCCccEEEEeCCCCcchhhhhccCCCceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEecc
Q 019738 107 QIEAALNSFNSREAQVVLLGAGMDTRAYRLNCLKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAAD 186 (336)
Q Consensus 107 ~v~~fl~~~~~g~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~D 186 (336)
.+..++.... .+.|+.+|||.=...+++.......++-||....+-.+.+.+..... ...+.+++.+|
T Consensus 113 ~l~~~l~~l~--g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~----------~~~~i~~~~~d 180 (322)
T PRK15068 113 RVLPHLSPLK--GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLG----------NDQRAHLLPLG 180 (322)
T ss_pred HHHHhhCCCC--CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcC----------CCCCeEEEeCC
Confidence 3444554332 36899999999999888875333358888874443333233322210 01367888888
Q ss_pred CCCChhhHHhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccCcc--cc---------cccC
Q 019738 187 IRENDWLEKLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMNQP--ST---------TLSS 255 (336)
Q Consensus 187 L~d~~~~~~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~~~--~~---------~~~~ 255 (336)
+.+... ...|| ++++-|+++++. +...+|+.+.+.+.+|+.+++.+++... .. ...+
T Consensus 181 ~e~lp~-----~~~FD-----~V~s~~vl~H~~--dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~ 248 (322)
T PRK15068 181 IEQLPA-----LKAFD-----TVFSMGVLYHRR--SPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRN 248 (322)
T ss_pred HHHCCC-----cCCcC-----EEEECChhhccC--CHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCcc
Confidence 765322 11233 567778888865 3457889999988887765554432111 00 0011
Q ss_pred CeeeecCCCcccccCCCCcceeeeccCC
Q 019738 256 SIFHFSSDWPDRLLPTLGFSNVRLSQIG 283 (336)
Q Consensus 256 a~f~~~~d~~e~~~~~~gF~~~m~~~~~ 283 (336)
.-|....++...++...||..+.+.+..
T Consensus 249 ~~~lps~~~l~~~L~~aGF~~i~~~~~~ 276 (322)
T PRK15068 249 VYFIPSVPALKNWLERAGFKDVRIVDVS 276 (322)
T ss_pred ceeCCCHHHHHHHHHHcCCceEEEEeCC
Confidence 1111122344666788999988776543
No 7
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.96 E-value=0.0095 Score=54.77 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=79.6
Q ss_pred CccEEEEeCCCCcchhhhhcc-CCCceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHh
Q 019738 118 REAQVVLLGAGMDTRAYRLNC-LKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKL 196 (336)
Q Consensus 118 g~~QVV~LGaGlDTr~~RL~~-~~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L 196 (336)
+..+||.+|+|.=.....+.. .++++++-+|+|+|++.-++ . +++.+++.|+.+ .+..
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~----~--------------~rv~~~~gd~f~-~~P~-- 158 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE----A--------------DRVEFVPGDFFD-PLPV-- 158 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH----T--------------TTEEEEES-TTT-CCSS--
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc----c--------------cccccccccHHh-hhcc--
Confidence 467999999999988888764 46899999999999876655 1 588999999984 3322
Q ss_pred hhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCc--eEEEEEeccCcc
Q 019738 197 QLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLV--HTVLLADFMNQP 249 (336)
Q Consensus 197 ~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~g--s~~l~~D~~~~~ 249 (336)
-=++++=-||...+++++..||+.+.+..++| +.+++.|++-+.
T Consensus 159 ---------~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 159 ---------ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp ---------ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred ---------ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 23677788899999999999999999999988 899999987443
No 8
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=96.73 E-value=0.018 Score=55.07 Aligned_cols=108 Identities=15% Similarity=0.176 Sum_probs=80.3
Q ss_pred CccEEEEeCCCCcchhhhhcc-CCCceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHh
Q 019738 118 REAQVVLLGAGMDTRAYRLNC-LKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKL 196 (336)
Q Consensus 118 g~~QVV~LGaGlDTr~~RL~~-~~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L 196 (336)
+...|+.+|||.=+....+.. .++.+++=+|.|++++.-++.+.+.+. .++++++..|+.+..+
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl-----------~~rv~~~~~d~~~~~~---- 213 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGV-----------ADRMRGIAVDIYKESY---- 213 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCc-----------cceEEEEecCccCCCC----
Confidence 346899999999988877754 256778888889998876666655421 2578899999876332
Q ss_pred hhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccC
Q 019738 197 QLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMN 247 (336)
Q Consensus 197 ~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~ 247 (336)
++. -++++-.++...+++....+++.+.+.+.+|+.+++.|++-
T Consensus 214 ------~~~-D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 214 ------PEA-DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred ------CCC-CEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 111 34445567778888899999999999999999999999753
No 9
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=96.64 E-value=0.04 Score=50.60 Aligned_cols=107 Identities=13% Similarity=0.170 Sum_probs=77.1
Q ss_pred ccEEEEeCCCCcchhhhhcc---CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhH
Q 019738 119 EAQVVLLGAGMDTRAYRLNC---LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLE 194 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~---~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~ 194 (336)
...|+.+|||-=.....+.. .++.+++-+|. |++++.-++.+..... ..+++++..|+.+...
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~-- 120 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----------EIPVEILCNDIRHVEI-- 120 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEECChhhCCC--
Confidence 45799999998766554432 24678888888 8887766666654321 1356778888875321
Q ss_pred HhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccC
Q 019738 195 KLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMN 247 (336)
Q Consensus 195 ~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~ 247 (336)
....++++-.++.|+++++...+++.+.+.+.+|+.+++.|.+.
T Consensus 121 ---------~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 121 ---------KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred ---------CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 11337788889999999889999999999998888888888653
No 10
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.51 E-value=0.043 Score=50.99 Aligned_cols=125 Identities=13% Similarity=0.150 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCccEEEEeCCCCcchhhhhccCCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCC
Q 019738 99 IRTLWFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTA 177 (336)
Q Consensus 99 ~Rt~~iD~~v~~fl~~~~~g~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s 177 (336)
+|...+..-+.+.++..+.....|+.+|||.-.....+.. .+..++-+|. |++++.-++.+.+.+. .
T Consensus 25 ~r~~~~~~~~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~-~g~~v~~vD~s~~~l~~a~~~~~~~g~-----------~ 92 (255)
T PRK11036 25 IRQAILWQDLDRLLAELPPRPLRVLDAGGGEGQTAIKLAE-LGHQVILCDLSAEMIQRAKQAAEAKGV-----------S 92 (255)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHhcCC-----------c
Confidence 4555555545566655432356899999999988888876 3567777887 7777766655554321 1
Q ss_pred CcEEEEeccCCCChhhHHhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEec
Q 019738 178 KSLTTVAADIRENDWLEKLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADF 245 (336)
Q Consensus 178 ~~y~~i~~DL~d~~~~~~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~ 245 (336)
.+++++.+|+.+.. . ... ..--++++-.++.|++.. ..+++.+.+...+|+.+++..+
T Consensus 93 ~~v~~~~~d~~~l~--~-~~~-----~~fD~V~~~~vl~~~~~~--~~~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 93 DNMQFIHCAAQDIA--Q-HLE-----TPVDLILFHAVLEWVADP--KSVLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred cceEEEEcCHHHHh--h-hcC-----CCCCEEEehhHHHhhCCH--HHHHHHHHHHcCCCeEEEEEEE
Confidence 46677887876421 1 111 223467778888998643 4788888888888877655543
No 11
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=96.43 E-value=0.035 Score=53.69 Aligned_cols=160 Identities=14% Similarity=0.196 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCccEEEEeCCCCcchhhhhccCCCceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCC
Q 019738 99 IRTLWFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNCLKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAK 178 (336)
Q Consensus 99 ~Rt~~iD~~v~~fl~~~~~g~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~ 178 (336)
.|..+.=+.+...+...+ .+.|+.+|||.-...+++.......++-||.-..+-...+.++.... ...
T Consensus 104 ~~s~~~~~~~l~~l~~~~--g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~----------~~~ 171 (314)
T TIGR00452 104 WRSDIKWDRVLPHLSPLK--GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLD----------NDK 171 (314)
T ss_pred HHHHHHHHHHHHhcCCCC--CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhc----------cCC
Confidence 444444333444444332 36899999999887777765333468899974433222222222100 013
Q ss_pred cEEEEeccCCCChhhHHhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccCccc--c-----
Q 019738 179 SLTTVAADIRENDWLEKLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMNQPS--T----- 251 (336)
Q Consensus 179 ~y~~i~~DL~d~~~~~~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~~~~--~----- 251 (336)
+.+++.+|+.+... ...|| ++++.||++++. +....|+.+.+...+|+.+++.+.+-... .
T Consensus 172 ~v~~~~~~ie~lp~-----~~~FD-----~V~s~gvL~H~~--dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~ 239 (314)
T TIGR00452 172 RAILEPLGIEQLHE-----LYAFD-----TVFSMGVLYHRK--SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPK 239 (314)
T ss_pred CeEEEECCHHHCCC-----CCCcC-----EEEEcchhhccC--CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCch
Confidence 55677777654221 11243 577788888874 34567888888888877766655432110 0
Q ss_pred ----cccCCeeeecCCCcccccCCCCcceeeeccC
Q 019738 252 ----TLSSSIFHFSSDWPDRLLPTLGFSNVRLSQI 282 (336)
Q Consensus 252 ----~~~~a~f~~~~d~~e~~~~~~gF~~~m~~~~ 282 (336)
+..+.-|.....+.+.++...||..+.+...
T Consensus 240 ~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 240 DRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDV 274 (314)
T ss_pred HHHHhccccccCCCHHHHHHHHHHCCCeEEEEEec
Confidence 0011112212234466678899999876543
No 12
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=96.41 E-value=0.064 Score=49.74 Aligned_cols=107 Identities=16% Similarity=0.206 Sum_probs=75.8
Q ss_pred ccEEEEeCCCCcchhhhhcc---CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhH
Q 019738 119 EAQVVLLGAGMDTRAYRLNC---LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLE 194 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~---~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~ 194 (336)
...|+.+|||.=.....+.. .++.+++-||. |++++.=++.+...+. ..+..++..|+.+...
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~-----------~~~v~~~~~d~~~~~~-- 123 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----------PTPVDVIEGDIRDIAI-- 123 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEeCChhhCCC--
Confidence 45899999997665443432 25678888887 8888776666654321 1356778888764221
Q ss_pred HhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccC
Q 019738 195 KLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMN 247 (336)
Q Consensus 195 ~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~ 247 (336)
...-++++-.++.++++++...+++.+.+.+.+|+.+++.|.+.
T Consensus 124 ---------~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 124 ---------ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred ---------CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 11235677788899999888999999999999888888888653
No 13
>PLN03075 nicotianamine synthase; Provisional
Probab=96.26 E-value=0.13 Score=49.42 Aligned_cols=104 Identities=15% Similarity=0.254 Sum_probs=70.6
Q ss_pred CccEEEEeCCC-Ccchhhhhcc--CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhh
Q 019738 118 REAQVVLLGAG-MDTRAYRLNC--LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWL 193 (336)
Q Consensus 118 g~~QVV~LGaG-lDTr~~RL~~--~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~ 193 (336)
+.+.|+.+||| +--.+.-+.. .++.++.-+|. |+.++.-++.+...... +++.++...|+.+. .
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL----------~~rV~F~~~Da~~~--~ 190 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL----------SKRMFFHTADVMDV--T 190 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc----------cCCcEEEECchhhc--c
Confidence 36799999999 6444444431 24666666665 77777777777543221 25688999998762 1
Q ss_pred HHhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEE
Q 019738 194 EKLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVL 241 (336)
Q Consensus 194 ~~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l 241 (336)
..+ ..|| .+|+. ++.|++.++-.++++.+.+...+|+.++
T Consensus 191 ~~l--~~FD----lVF~~--ALi~~dk~~k~~vL~~l~~~LkPGG~Lv 230 (296)
T PLN03075 191 ESL--KEYD----VVFLA--ALVGMDKEEKVKVIEHLGKHMAPGALLM 230 (296)
T ss_pred ccc--CCcC----EEEEe--cccccccccHHHHHHHHHHhcCCCcEEE
Confidence 111 1233 67777 9999999999999999999998877533
No 14
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=96.14 E-value=0.096 Score=46.88 Aligned_cols=107 Identities=13% Similarity=0.122 Sum_probs=72.1
Q ss_pred ccEEEEeCCCCcchhhhhccCCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHhh
Q 019738 119 EAQVVLLGAGMDTRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQ 197 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L~ 197 (336)
...|+.+|||.=.....|.. .+.++.=+|. |+.++.-++.+....- .+.+.+..|+.+..+ .
T Consensus 31 ~~~vLDiGcG~G~~a~~La~-~g~~V~gvD~S~~~i~~a~~~~~~~~~------------~~v~~~~~d~~~~~~----~ 93 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAA-NGFDVTAWDKNPMSIANLERIKAAENL------------DNLHTAVVDLNNLTF----D 93 (197)
T ss_pred CCcEEEECCCCCHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHHcCC------------CcceEEecChhhCCc----C
Confidence 35799999998777767765 3456777776 6666655555544310 245666677765322 1
Q ss_pred hcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccCc
Q 019738 198 LSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMNQ 248 (336)
Q Consensus 198 ~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~~ 248 (336)
..|| ++++-.+++|++++....+++.+.+.+.+|+.+++.+.+.+
T Consensus 94 -~~fD-----~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~ 138 (197)
T PRK11207 94 -GEYD-----FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDT 138 (197)
T ss_pred -CCcC-----EEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecC
Confidence 1133 66677788999999999999999999988887555555443
No 15
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=96.09 E-value=0.082 Score=41.95 Aligned_cols=102 Identities=19% Similarity=0.198 Sum_probs=71.5
Q ss_pred cEEEEeCCCCcchhhhhcc-CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccC-CCChhhHHh
Q 019738 120 AQVVLLGAGMDTRAYRLNC-LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADI-RENDWLEKL 196 (336)
Q Consensus 120 ~QVV~LGaGlDTr~~RL~~-~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL-~d~~~~~~L 196 (336)
..|+.||||.=.....+.. .++.+++=||. |++++.=++.+.+.. ..++.+++..|+ ...++
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----------~~~~i~~~~~d~~~~~~~---- 67 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG-----------LSDRITFVQGDAEFDPDF---- 67 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT-----------TTTTEEEEESCCHGGTTT----
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC-----------CCCCeEEEECccccCccc----
Confidence 4799999999888777765 24677777777 888877777764332 136889999999 22111
Q ss_pred hhcCCCCCCcEEEEeec-ccc-ccChHHHHHHHHHHHHhCCCceEEEE
Q 019738 197 QLSGYKPEKNTVWVLEG-IIY-YLLDIHAMQVLKLIADKCNLVHTVLL 242 (336)
Q Consensus 197 ~~~g~d~~~Ptl~i~EG-vl~-YL~~~~~~~Ll~~l~~~~~~gs~~l~ 242 (336)
....-++++-+ .+. |++.++..++++.+.+.+.+|..+++
T Consensus 68 ------~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi 109 (112)
T PF12847_consen 68 ------LEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVI 109 (112)
T ss_dssp ------SSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ------CCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence 12345666666 343 66668899999999999988776544
No 16
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=96.06 E-value=0.069 Score=48.09 Aligned_cols=106 Identities=22% Similarity=0.220 Sum_probs=67.8
Q ss_pred ccEEEEeCCCCcchhhhhccCCCceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHhhh
Q 019738 119 EAQVVLLGAGMDTRAYRLNCLKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQL 198 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L~~ 198 (336)
...++.||||-=--+.-|.. .+..+.-+|.-++--.|.+.+.+... -..+...+|+.+.++.+
T Consensus 31 ~g~~LDlgcG~GRNalyLA~-~G~~VtAvD~s~~al~~l~~~a~~~~------------l~i~~~~~Dl~~~~~~~---- 93 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLAS-QGFDVTAVDISPVALEKLQRLAEEEG------------LDIRTRVADLNDFDFPE---- 93 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHH-TT-EEEEEESSHHHHHHHHHHHHHTT-------------TEEEEE-BGCCBS-TT----
T ss_pred CCcEEEcCCCCcHHHHHHHH-CCCeEEEEECCHHHHHHHHHHHhhcC------------ceeEEEEecchhccccC----
Confidence 56899999998777777765 35555566654443334444444322 23677788988744321
Q ss_pred cCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccC
Q 019738 199 SGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMN 247 (336)
Q Consensus 199 ~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~ 247 (336)
.=-++++-+|++||+++....+++.+.+...+|+..++..++.
T Consensus 94 ------~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~ 136 (192)
T PF03848_consen 94 ------EYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFME 136 (192)
T ss_dssp ------TEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB-
T ss_pred ------CcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecc
Confidence 1137788899999999999999999999887777656545544
No 17
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=96.03 E-value=0.13 Score=46.02 Aligned_cols=105 Identities=16% Similarity=0.130 Sum_probs=69.8
Q ss_pred ccEEEEeCCCCcchhhhhccCCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHhh
Q 019738 119 EAQVVLLGAGMDTRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQ 197 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L~ 197 (336)
...|+.+|||.-.....+.. .+..++-+|. |++++.-++.....+ -+.+...+|+.... +
T Consensus 31 ~~~vLDiGcG~G~~a~~la~-~g~~V~~iD~s~~~l~~a~~~~~~~~-------------~~v~~~~~d~~~~~----~- 91 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSL-AGYDVRAWDHNPASIASVLDMKAREN-------------LPLRTDAYDINAAA----L- 91 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHH-CCCeEEEEECCHHHHHHHHHHHHHhC-------------CCceeEeccchhcc----c-
Confidence 45899999999988777764 2456666666 666665555444321 02344555654321 1
Q ss_pred hcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccC
Q 019738 198 LSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMN 247 (336)
Q Consensus 198 ~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~ 247 (336)
+ ..--++++..++++++.+....+++.+.+.+.+|+.+++.+...
T Consensus 92 ----~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~ 136 (195)
T TIGR00477 92 ----N-EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMD 136 (195)
T ss_pred ----c-CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecc
Confidence 1 12347778888999999999999999999998888756655443
No 18
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=95.98 E-value=0.13 Score=48.87 Aligned_cols=103 Identities=18% Similarity=0.174 Sum_probs=69.2
Q ss_pred cEEEEeCCCCcchhhhhccCCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHhhh
Q 019738 120 AQVVLLGAGMDTRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQL 198 (336)
Q Consensus 120 ~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L~~ 198 (336)
..|+.+|||.=.....+.. .+.+++=+|. ++.++.=++..+..+ -+.+.+..|+.+..+ .
T Consensus 122 ~~vLDlGcG~G~~~~~la~-~g~~V~avD~s~~ai~~~~~~~~~~~-------------l~v~~~~~D~~~~~~-----~ 182 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLAL-LGFDVTAVDINQQSLENLQEIAEKEN-------------LNIRTGLYDINSASI-----Q 182 (287)
T ss_pred CCEEEeCCCCCHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHcC-------------CceEEEEechhcccc-----c
Confidence 4899999998766666654 2456777776 555554333333321 145666667764322 1
Q ss_pred cCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEecc
Q 019738 199 SGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFM 246 (336)
Q Consensus 199 ~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~ 246 (336)
..| -++++.++++|++++....+++.+.+...+|+.+++....
T Consensus 183 ~~f-----D~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~ 225 (287)
T PRK12335 183 EEY-----DFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAM 225 (287)
T ss_pred CCc-----cEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 123 3788889999999999999999999999888765554433
No 19
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=95.89 E-value=0.033 Score=43.98 Aligned_cols=94 Identities=20% Similarity=0.114 Sum_probs=60.5
Q ss_pred EEEeCCCCcchhhhhcc----CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHh
Q 019738 122 VVLLGAGMDTRAYRLNC----LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKL 196 (336)
Q Consensus 122 VV~LGaGlDTr~~RL~~----~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L 196 (336)
|+.||||.=+....+.. .+..+++=||+ ++.++.=++...+.+ .+.+++..|+.+ + ...
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~-------------~~~~~~~~D~~~--l-~~~ 64 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG-------------PKVRFVQADARD--L-PFS 64 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT-------------TTSEEEESCTTC--H-HHH
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC-------------CceEEEECCHhH--C-ccc
Confidence 68899998666555442 12377888886 666665555544321 256789999976 2 111
Q ss_pred hhcCCCCCCcEEEEe-eccccccChHHHHHHHHHHHHhCCCc
Q 019738 197 QLSGYKPEKNTVWVL-EGIIYYLLDIHAMQVLKLIADKCNLV 237 (336)
Q Consensus 197 ~~~g~d~~~Ptl~i~-EGvl~YL~~~~~~~Ll~~l~~~~~~g 237 (336)
+ ..--++++ -+++.|+++++..++++.+.+...+|
T Consensus 65 -----~-~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pg 100 (101)
T PF13649_consen 65 -----D-GKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPG 100 (101)
T ss_dssp -----S-SSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred -----C-CCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCC
Confidence 1 23445555 67799999999999999999987543
No 20
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=95.83 E-value=0.055 Score=50.27 Aligned_cols=141 Identities=13% Similarity=0.231 Sum_probs=92.5
Q ss_pred EEEEeCCCCcchhhhhcc---CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHh
Q 019738 121 QVVLLGAGMDTRAYRLNC---LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKL 196 (336)
Q Consensus 121 QVV~LGaGlDTr~~RL~~---~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L 196 (336)
.|+.+|||-=...|=+-. .++..+|-.|+ |.-++. ++++..-. ..+.+.--+||..+++.+..
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~----vk~~~~~~---------e~~~~afv~Dlt~~~~~~~~ 140 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIEL----VKKSSGYD---------ESRVEAFVWDLTSPSLKEPP 140 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHH----HHhccccc---------hhhhcccceeccchhccCCC
Confidence 589999999888777653 24599999999 655543 33332211 13556667799887766666
Q ss_pred hhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccCccc--ccc--------------cCCe-ee
Q 019738 197 QLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMNQPS--TTL--------------SSSI-FH 259 (336)
Q Consensus 197 ~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~~~~--~~~--------------~~a~-f~ 259 (336)
...++|.-.-+ -||.=+.++.-...|..+.+.+.+|+.+++-||-.-.. +++ .|.+ +-
T Consensus 141 ~~~svD~it~I-----FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~Yf 215 (264)
T KOG2361|consen 141 EEGSVDIITLI-----FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYF 215 (264)
T ss_pred CcCccceEEEE-----EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeee
Confidence 55555533333 34455779999999999999999999888888865332 111 2232 22
Q ss_pred ecCCCcccccCCCCcceeee
Q 019738 260 FSSDWPDRLLPTLGFSNVRL 279 (336)
Q Consensus 260 ~~~d~~e~~~~~~gF~~~m~ 279 (336)
|..++...++...||..+.+
T Consensus 216 F~~eeL~~~f~~agf~~~~~ 235 (264)
T KOG2361|consen 216 FTEEELDELFTKAGFEEVQL 235 (264)
T ss_pred ccHHHHHHHHHhcccchhcc
Confidence 22244566778888887754
No 21
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=95.80 E-value=0.29 Score=46.81 Aligned_cols=142 Identities=15% Similarity=0.136 Sum_probs=98.0
Q ss_pred hcchhhhccccccchhhHHHHHHHHHHHHHHHHhhcC--CCccEEEEeCCCCcchhhhhcc--CC-CceEEEcch-HHHH
Q 019738 80 KIKKDRLNNAREISGVILAIRTLWFDSQIEAALNSFN--SREAQVVLLGAGMDTRAYRLNC--LK-ESDVFEVDF-SQVL 153 (336)
Q Consensus 80 ~i~~~~~~~~~~~~~~~~~~Rt~~iD~~v~~fl~~~~--~g~~QVV~LGaGlDTr~~RL~~--~~-~~~~~EvD~-P~vi 153 (336)
.|++.++...| + .++-.|...+.+.|++.+.... +....||++.||-=---+-... +. ...+.=.|+ |..+
T Consensus 98 liDr~yLnaiG-W--rGIR~Rk~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv 174 (311)
T PF12147_consen 98 LIDRNYLNAIG-W--RGIRQRKVHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINV 174 (311)
T ss_pred HHHHhhhcccc-h--HHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHH
Confidence 45555554333 2 2477888888999998887531 2467899999996433222211 11 245555666 8888
Q ss_pred HHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHhhhcCCCCCCcEEEEeeccccccChHH-HHHHHHHHHH
Q 019738 154 QVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQLSGYKPEKNTVWVLEGIIYYLLDIH-AMQVLKLIAD 232 (336)
Q Consensus 154 ~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L~~~g~d~~~Ptl~i~EGvl~YL~~~~-~~~Ll~~l~~ 232 (336)
+.-++++++.+- .+-.++...|..|.+-+..| .-.|+|.|.-|+.-|++..+ +...|+.+++
T Consensus 175 ~~g~~li~~~gL-----------~~i~~f~~~dAfd~~~l~~l------~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~ 237 (311)
T PF12147_consen 175 EKGRALIAERGL-----------EDIARFEQGDAFDRDSLAAL------DPAPTLAIVSGLYELFPDNDLVRRSLAGLAR 237 (311)
T ss_pred HHHHHHHHHcCC-----------ccceEEEecCCCCHhHhhcc------CCCCCEEEEecchhhCCcHHHHHHHHHHHHH
Confidence 989999987642 12348889998885544444 35799999999999999866 8889999999
Q ss_pred hCCCceEEE
Q 019738 233 KCNLVHTVL 241 (336)
Q Consensus 233 ~~~~gs~~l 241 (336)
...+|+.+|
T Consensus 238 al~pgG~lI 246 (311)
T PF12147_consen 238 ALEPGGYLI 246 (311)
T ss_pred HhCCCcEEE
Confidence 888876533
No 22
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=95.56 E-value=0.19 Score=45.51 Aligned_cols=111 Identities=15% Similarity=0.266 Sum_probs=71.7
Q ss_pred HHHhhcCCCccEEEEeCCCCcchhhhhccC-CCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccC
Q 019738 110 AALNSFNSREAQVVLLGAGMDTRAYRLNCL-KESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADI 187 (336)
Q Consensus 110 ~fl~~~~~g~~QVV~LGaGlDTr~~RL~~~-~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL 187 (336)
+++...+ ....|+.+|||.=.....|... ++..++=||. |+.++.-++.+. +..++..|+
T Consensus 36 ~~l~~~~-~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-----------------~~~~~~~d~ 97 (204)
T TIGR03587 36 RALNRLP-KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-----------------NINIIQGSL 97 (204)
T ss_pred HHHHhcC-CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-----------------CCcEEEeec
Confidence 3344333 3457999999998776666542 3567777776 566554433221 223455666
Q ss_pred CCChhhHHhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccCccc
Q 019738 188 RENDWLEKLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMNQPS 250 (336)
Q Consensus 188 ~d~~~~~~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~~~~ 250 (336)
.+ . +....=-++++-+++++++++...++++.+.+.+. ..+++.++.++..
T Consensus 98 ~~-~---------~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~~--~~v~i~e~~~~~~ 148 (204)
T TIGR03587 98 FD-P---------FKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCSN--RYILIAEYYNPSP 148 (204)
T ss_pred cC-C---------CCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhcC--cEEEEEEeeCCCc
Confidence 54 1 11122347888999999999999999999998763 4678888876543
No 23
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=95.47 E-value=0.28 Score=46.08 Aligned_cols=141 Identities=14% Similarity=0.161 Sum_probs=84.5
Q ss_pred ccEEEEeCCCCcchhhhhccCCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHhh
Q 019738 119 EAQVVLLGAGMDTRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQ 197 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L~ 197 (336)
...|+.+|||.-.....+....+++++-+|. |++++.-++..... .+..++.+|+.+..+
T Consensus 53 ~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~--------------~~i~~~~~D~~~~~~----- 113 (263)
T PTZ00098 53 NSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK--------------NKIEFEANDILKKDF----- 113 (263)
T ss_pred CCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC--------------CceEEEECCcccCCC-----
Confidence 4589999999877666664323467777776 55555443333211 356778888764322
Q ss_pred hcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccCcccccc--------cCCeeeec-CCCcccc
Q 019738 198 LSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMNQPSTTL--------SSSIFHFS-SDWPDRL 268 (336)
Q Consensus 198 ~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~~~~~~~--------~~a~f~~~-~d~~e~~ 268 (336)
....=-++++..++.+++.++...+++.+.+.+.+|+.+++.|+........ ....+... .++-.++
T Consensus 114 ----~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (263)
T PTZ00098 114 ----PENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDL 189 (263)
T ss_pred ----CCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 1112235666566677888889999999999999988888888754321100 00001111 1222455
Q ss_pred cCCCCcceeeeccC
Q 019738 269 LPTLGFSNVRLSQI 282 (336)
Q Consensus 269 ~~~~gF~~~m~~~~ 282 (336)
+...||..+...++
T Consensus 190 l~~aGF~~v~~~d~ 203 (263)
T PTZ00098 190 IKSCNFQNVVAKDI 203 (263)
T ss_pred HHHCCCCeeeEEeC
Confidence 57788888766544
No 24
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=95.30 E-value=0.39 Score=45.98 Aligned_cols=126 Identities=13% Similarity=0.142 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhhcCCCccEEEEeCCCCcchhhhhccC--CCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCc
Q 019738 103 WFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNCL--KESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKS 179 (336)
Q Consensus 103 ~iD~~v~~fl~~~~~g~~QVV~LGaGlDTr~~RL~~~--~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~ 179 (336)
++++...+..+..+ ....||.||||-=...-.|... +..+++=||. +++++.=++.+.... | .-+
T Consensus 49 il~~~~~~ia~~~~-~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~---p--------~~~ 116 (301)
T TIGR03438 49 ILERHADEIAAATG-AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY---P--------QLE 116 (301)
T ss_pred HHHHHHHHHHHhhC-CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC---C--------Cce
Confidence 33444444433333 2458999999988766555431 2577888887 566555544444321 1 124
Q ss_pred EEEEeccCCCC-hhhHHhhhcCCCCCCcEEEEeecc-ccccChHHHHHHHHHHHHhCCCceEEE-EEecc
Q 019738 180 LTTVAADIREN-DWLEKLQLSGYKPEKNTVWVLEGI-IYYLLDIHAMQVLKLIADKCNLVHTVL-LADFM 246 (336)
Q Consensus 180 y~~i~~DL~d~-~~~~~L~~~g~d~~~Ptl~i~EGv-l~YL~~~~~~~Ll~~l~~~~~~gs~~l-~~D~~ 246 (336)
...+.+|+.+. .+... ++ +.+.++++-|. +.++++++..++|+.+.+.+.+|+.++ .+|..
T Consensus 117 v~~i~gD~~~~~~~~~~-----~~-~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 117 VHGICADFTQPLALPPE-----PA-AGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred EEEEEEcccchhhhhcc-----cc-cCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 56678899863 22221 11 23566666665 555899999999999999998776543 24443
No 25
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=95.03 E-value=0.58 Score=39.64 Aligned_cols=106 Identities=17% Similarity=0.215 Sum_probs=73.7
Q ss_pred ccEEEEeCCCCcchhhhhcc--CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHH
Q 019738 119 EAQVVLLGAGMDTRAYRLNC--LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEK 195 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~--~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~ 195 (336)
...|+.||||.=...+.+.. .++.+++=||. |++++.=++.+++.+ .++++++..|+.+.+- .
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~------------~~ni~~~~~d~~~l~~--~ 69 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG------------LDNIEFIQGDIEDLPQ--E 69 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT------------STTEEEEESBTTCGCG--C
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc------------ccccceEEeehhcccc--c
Confidence 56899999998888777762 34677888887 777777766666542 2478999999987321 1
Q ss_pred hhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEecc
Q 019738 196 LQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFM 246 (336)
Q Consensus 196 L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~ 246 (336)
+. ..=-++++-+++.++... ..+++.+.+...++..+++.++.
T Consensus 70 ~~------~~~D~I~~~~~l~~~~~~--~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 70 LE------EKFDIIISNGVLHHFPDP--EKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp SS------TTEEEEEEESTGGGTSHH--HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cC------CCeeEEEEcCchhhccCH--HHHHHHHHHHcCCCcEEEEEECC
Confidence 11 233478888888887754 47788888888776666666655
No 26
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=94.49 E-value=0.16 Score=46.38 Aligned_cols=142 Identities=15% Similarity=0.076 Sum_probs=88.7
Q ss_pred HHHHhhcCCCccEEEEeCCCCcchhhhhccCCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEE-EEecc
Q 019738 109 EAALNSFNSREAQVVLLGAGMDTRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLT-TVAAD 186 (336)
Q Consensus 109 ~~fl~~~~~g~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~-~i~~D 186 (336)
..|+-++ ++.-|+.+|||--+-+--.++.+.+++.-||- |.+.+.-.+-+.+. .| .++. +|-+|
T Consensus 69 ~~~~gk~--~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~---k~---------~~~~~fvva~ 134 (252)
T KOG4300|consen 69 YYFLGKS--GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEK---KP---------LQVERFVVAD 134 (252)
T ss_pred HHHhccc--CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhc---cC---------cceEEEEeec
Confidence 3566665 56778999999999877777667889999997 55554444444443 11 3444 77777
Q ss_pred CCCChhhHHhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccCcccccccCCeeeecCCCcc
Q 019738 187 IRENDWLEKLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMNQPSTTLSSSIFHFSSDWPD 266 (336)
Q Consensus 187 L~d~~~~~~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~~~~~~~~~a~f~~~~d~~e 266 (336)
..+. ..|.+..+|.=.-||++ -+.++..+.|+.+.+.+.+|+.+++.+
T Consensus 135 ge~l---~~l~d~s~DtVV~TlvL-------CSve~~~k~L~e~~rlLRpgG~iifiE---------------------- 182 (252)
T KOG4300|consen 135 GENL---PQLADGSYDTVVCTLVL-------CSVEDPVKQLNEVRRLLRPGGRIIFIE---------------------- 182 (252)
T ss_pred hhcC---cccccCCeeeEEEEEEE-------eccCCHHHHHHHHHHhcCCCcEEEEEe----------------------
Confidence 7763 33444334433333333 356778888999999988877655444
Q ss_pred cccCCCCcceeeeccCCCcccccCCCCCcc
Q 019738 267 RLLPTLGFSNVRLSQIGDPDAHFGLMNDPL 296 (336)
Q Consensus 267 ~~~~~~gF~~~m~~~~~e~~~~f~~~~~pl 296 (336)
.....++|=..++.+..|+.-|+..++|-+
T Consensus 183 Hva~~y~~~n~i~q~v~ep~~~~~~dGC~l 212 (252)
T KOG4300|consen 183 HVAGEYGFWNRILQQVAEPLWHLESDGCVL 212 (252)
T ss_pred cccccchHHHHHHHHHhchhhheeccceEE
Confidence 334444554555556666555666666655
No 27
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=94.31 E-value=0.42 Score=48.44 Aligned_cols=106 Identities=17% Similarity=0.223 Sum_probs=72.1
Q ss_pred ccEEEEeCCCCcchhhhhccCCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHhh
Q 019738 119 EAQVVLLGAGMDTRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQ 197 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L~ 197 (336)
...|+.||||.=....-+... ..+++-||+ |++++..++ .... .++..++.+|+.+..+
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~-~~~~-------------~~~i~~~~~d~~~~~~----- 97 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNES-INGH-------------YKNVKFMCADVTSPDL----- 97 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHH-Hhcc-------------CCceEEEEeccccccc-----
Confidence 347999999988776666542 346677776 555543322 1111 1356788888865321
Q ss_pred hcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEecc
Q 019738 198 LSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFM 246 (336)
Q Consensus 198 ~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~ 246 (336)
.+..+.--++++..+++|++.++..++++.+.+.+.+|+.+++.|..
T Consensus 98 --~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~ 144 (475)
T PLN02336 98 --NISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESC 144 (475)
T ss_pred --CCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 12223445888999999999999999999999998888877776654
No 28
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=93.64 E-value=0.62 Score=42.17 Aligned_cols=104 Identities=15% Similarity=0.213 Sum_probs=66.7
Q ss_pred CccEEEEeCCCCcchhhhhccC-CCceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHh
Q 019738 118 REAQVVLLGAGMDTRAYRLNCL-KESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKL 196 (336)
Q Consensus 118 g~~QVV~LGaGlDTr~~RL~~~-~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L 196 (336)
....++.+|||-=..--+|... ..+..+|+. |.-++.-++.+... +++.++..|+.+ .|.+
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis-~~Al~~Ar~Rl~~~--------------~~V~~~~~dvp~-~~P~-- 104 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDIS-PRALARARERLAGL--------------PHVEWIQADVPE-FWPE-- 104 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGEEEEEEEES--HHHHHHHHHHTTT---------------SSEEEEES-TTT----S--
T ss_pred ccceeEecCCCccHHHHHHHHhhCceEEEeCC-HHHHHHHHHhcCCC--------------CCeEEEECcCCC-CCCC--
Confidence 4678999999998888777642 234444444 55556666555543 478899999976 2322
Q ss_pred hhcCCCCCCcEEEEeeccccccCh-HHHHHHHHHHHHhCCCceEEEEEecc
Q 019738 197 QLSGYKPEKNTVWVLEGIIYYLLD-IHAMQVLKLIADKCNLVHTVLLADFM 246 (336)
Q Consensus 197 ~~~g~d~~~Ptl~i~EGvl~YL~~-~~~~~Ll~~l~~~~~~gs~~l~~D~~ 246 (336)
..|| .++++| |++||++ ++...+++.+.+.+.+|+.+|+.+..
T Consensus 105 --~~FD----LIV~SE-VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 105 --GRFD----LIVLSE-VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp --S-EE----EEEEES--GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred --CCee----EEEEeh-HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 1233 455555 8999985 78999999999999888887777654
No 29
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=92.36 E-value=0.89 Score=34.19 Aligned_cols=92 Identities=13% Similarity=0.107 Sum_probs=57.2
Q ss_pred EEeCCCCcchhhhhccCCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHhhhcCC
Q 019738 123 VLLGAGMDTRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQLSGY 201 (336)
Q Consensus 123 V~LGaGlDTr~~RL~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L~~~g~ 201 (336)
+.+|||.=.....+...+...++-+|. ++.++.=++.+.. .+..++..|..+..+.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~---------------~~~~~~~~d~~~l~~~-------- 57 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN---------------EGVSFRQGDAEDLPFP-------- 57 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT---------------STEEEEESBTTSSSS---------
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc---------------cCchheeehHHhCccc--------
Confidence 468888666655555434667777776 3333333332222 2345777787764322
Q ss_pred CCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEE
Q 019738 202 KPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTV 240 (336)
Q Consensus 202 d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~ 240 (336)
.+.=-++++-+++.|+ ++..++++.+.+...+|+.+
T Consensus 58 -~~sfD~v~~~~~~~~~--~~~~~~l~e~~rvLk~gG~l 93 (95)
T PF08241_consen 58 -DNSFDVVFSNSVLHHL--EDPEAALREIYRVLKPGGRL 93 (95)
T ss_dssp -TT-EEEEEEESHGGGS--SHHHHHHHHHHHHEEEEEEE
T ss_pred -cccccccccccceeec--cCHHHHHHHHHHHcCcCeEE
Confidence 2223478999999999 88889999999998877643
No 30
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=92.33 E-value=1.6 Score=39.29 Aligned_cols=140 Identities=14% Similarity=0.129 Sum_probs=81.5
Q ss_pred EEEEeCCCCcchhhhhcc-CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHhhh
Q 019738 121 QVVLLGAGMDTRAYRLNC-LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQL 198 (336)
Q Consensus 121 QVV~LGaGlDTr~~RL~~-~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L~~ 198 (336)
.|+.+|||.=.....+.. .++++++-+|+ |+.++.-++.+...+. ..+..++..|+.+..+ .
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl-----------~~~i~~~~~d~~~~~~-----~ 65 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL-----------QGRIRIFYRDSAKDPF-----P 65 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CcceEEEecccccCCC-----C
Confidence 589999998776666643 23466777776 6665555555544321 1456778888754322 1
Q ss_pred cCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccCcccccccC---CeeeecCCCcccccCCCCcc
Q 019738 199 SGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMNQPSTTLSS---SIFHFSSDWPDRLLPTLGFS 275 (336)
Q Consensus 199 ~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~~~~~~~~~---a~f~~~~d~~e~~~~~~gF~ 275 (336)
..|| ++++-.++.++.. ...+++.+.+.+.+|+.+++.|+.......... ..+.....+-.+++...||.
T Consensus 66 ~~fD-----~I~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~ 138 (224)
T smart00828 66 DTYD-----LVFGFEVIHHIKD--KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLR 138 (224)
T ss_pred CCCC-----EeehHHHHHhCCC--HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCe
Confidence 1233 5566666666643 578999999999888888888875432111110 11111111223455678888
Q ss_pred eeeeccCC
Q 019738 276 NVRLSQIG 283 (336)
Q Consensus 276 ~~m~~~~~ 283 (336)
.+...+++
T Consensus 139 ~~~~~~~~ 146 (224)
T smart00828 139 VVEGVDAS 146 (224)
T ss_pred EEEeEECc
Confidence 87665543
No 31
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=91.80 E-value=3.5 Score=30.49 Aligned_cols=98 Identities=16% Similarity=0.077 Sum_probs=58.2
Q ss_pred EEEeCCCCcchhhhhccCCCceEEEcch--HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHhhhc
Q 019738 122 VVLLGAGMDTRAYRLNCLKESDVFEVDF--SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQLS 199 (336)
Q Consensus 122 VV~LGaGlDTr~~RL~~~~~~~~~EvD~--P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L~~~ 199 (336)
|+.+|||.-.....+.......++=+|. ..+...++ ...... ..+..++..|+.+...
T Consensus 2 ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~------------~~~~~~~~~~~~~~~~------- 61 (107)
T cd02440 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARK-AAAALL------------ADNVEVLKGDAEELPP------- 61 (107)
T ss_pred eEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-HHhccc------------ccceEEEEcChhhhcc-------
Confidence 7899999877665555423444554444 33333332 111111 1356777778776432
Q ss_pred CCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEE
Q 019738 200 GYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVL 241 (336)
Q Consensus 200 g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l 241 (336)
......-++++-+++.++ .+....+++.+.+...+++.++
T Consensus 62 -~~~~~~d~i~~~~~~~~~-~~~~~~~l~~~~~~l~~~g~~~ 101 (107)
T cd02440 62 -EADESFDVIISDPPLHHL-VEDLARFLEEARRLLKPGGVLV 101 (107)
T ss_pred -ccCCceEEEEEccceeeh-hhHHHHHHHHHHHHcCCCCEEE
Confidence 123445677887777776 7788888899888877665433
No 32
>PLN02244 tocopherol O-methyltransferase
Probab=91.73 E-value=1.7 Score=42.31 Aligned_cols=107 Identities=10% Similarity=0.072 Sum_probs=67.6
Q ss_pred ccEEEEeCCCCcchhhhhccCCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHhh
Q 019738 119 EAQVVLLGAGMDTRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQ 197 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L~ 197 (336)
...|+.+|||.=.....+....+..++-||+ |..++.-++..+..+. .++..++..|..+..+ .
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~-----------~~~v~~~~~D~~~~~~----~ 183 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGL-----------SDKVSFQVADALNQPF----E 183 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEEcCcccCCC----C
Confidence 4689999999888777776422456777776 5555544444443321 1457888888876432 1
Q ss_pred hcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccC
Q 019738 198 LSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMN 247 (336)
Q Consensus 198 ~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~ 247 (336)
+..|| ++++-.++.+++. ..++++.+.+.+.+|+.+++.|...
T Consensus 184 ~~~FD-----~V~s~~~~~h~~d--~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 184 DGQFD-----LVWSMESGEHMPD--KRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred CCCcc-----EEEECCchhccCC--HHHHHHHHHHHcCCCcEEEEEEecc
Confidence 11233 4555455666653 4578888888888888888877643
No 33
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=91.70 E-value=5.7 Score=37.13 Aligned_cols=110 Identities=15% Similarity=0.126 Sum_probs=67.6
Q ss_pred ccEEEEeCCCCcchhhhhcc--CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHH
Q 019738 119 EAQVVLLGAGMDTRAYRLNC--LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEK 195 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~--~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~ 195 (336)
...|+.+|||-=.....+.. ++...++-||. +++++.-++........ ...+..++.+|..+...
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~---------~~~~i~~~~~d~~~lp~--- 141 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS---------CYKNIEWIEGDATDLPF--- 141 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc---------cCCCeEEEEcccccCCC---
Confidence 45899999999876666643 23457888887 66665443332211100 01367788888765322
Q ss_pred hhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccCc
Q 019738 196 LQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMNQ 248 (336)
Q Consensus 196 L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~~ 248 (336)
.+ +.--++++-.++.+++ +...+++.+.+.+.+|+.+++.|+..+
T Consensus 142 -~~-----~sfD~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 142 -DD-----CYFDAITMGYGLRNVV--DRLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred -CC-----CCEeEEEEecccccCC--CHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 11 1122444444555554 457789999999988888888888654
No 34
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=91.66 E-value=2.2 Score=41.42 Aligned_cols=124 Identities=9% Similarity=0.027 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHhhcC-----CCccEEEEeCCCCcchhhhhccCCCceEEEcch-HHHHHHHHHHHHhhhccCCCCC
Q 019738 98 AIRTLWFDSQIEAALNSFN-----SREAQVVLLGAGMDTRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQ 171 (336)
Q Consensus 98 ~~Rt~~iD~~v~~fl~~~~-----~g~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~ 171 (336)
-.|..+|.+.+.+.+.... .....|+.+|||-=.....+.. .+..++=||. ++.++.-++.......
T Consensus 106 ~~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~La~-~g~~V~GID~s~~~i~~Ar~~~~~~~~------ 178 (322)
T PLN02396 106 PTRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLAR-MGATVTGVDAVDKNVKIARLHADMDPV------ 178 (322)
T ss_pred hHHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHhcCc------
Confidence 3577777776665554211 1124799999998876666654 3567777776 6666554443322110
Q ss_pred CCccCCCcEEEEeccCCCChhhHHhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEe
Q 019738 172 HPRMTAKSLTTVAADIRENDWLEKLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLAD 244 (336)
Q Consensus 172 ~~~l~s~~y~~i~~DL~d~~~~~~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D 244 (336)
..+..++..|+.+.. .....|| ++++-.|+.+++.. ..+++.+.+...+|+.+++.+
T Consensus 179 -----~~~i~~~~~dae~l~----~~~~~FD-----~Vi~~~vLeHv~d~--~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 179 -----TSTIEYLCTTAEKLA----DEGRKFD-----AVLSLEVIEHVANP--AEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred -----ccceeEEecCHHHhh----hccCCCC-----EEEEhhHHHhcCCH--HHHHHHHHHHcCCCcEEEEEE
Confidence 135667777764321 1111233 55556677887743 578889999888877655443
No 35
>PRK06202 hypothetical protein; Provisional
Probab=91.02 E-value=3.6 Score=37.44 Aligned_cols=105 Identities=19% Similarity=0.096 Sum_probs=63.1
Q ss_pred CccEEEEeCCCCcchhhhhcc-----CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCCh
Q 019738 118 REAQVVLLGAGMDTRAYRLNC-----LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIREND 191 (336)
Q Consensus 118 g~~QVV~LGaGlDTr~~RL~~-----~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~ 191 (336)
+...|+.||||.-.....|.. ..+.+++=+|. |++++.-++.+... +..++..|..+..
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---------------~~~~~~~~~~~l~ 124 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---------------GVTFRQAVSDELV 124 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---------------CCeEEEEeccccc
Confidence 356899999999876555532 23568889997 77776544333211 1222222322211
Q ss_pred hhHHhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccCc
Q 019738 192 WLEKLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMNQ 248 (336)
Q Consensus 192 ~~~~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~~ 248 (336)
. . .+.--++++-.++.++++++...+++.+.+...+ .+++.|+..+
T Consensus 125 ~----~-----~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~~--~~~i~dl~~~ 170 (232)
T PRK06202 125 A----E-----GERFDVVTSNHFLHHLDDAEVVRLLADSAALARR--LVLHNDLIRS 170 (232)
T ss_pred c----c-----CCCccEEEECCeeecCChHHHHHHHHHHHHhcCe--eEEEeccccC
Confidence 1 1 1223366666789999988888999999887653 3456665543
No 36
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=90.33 E-value=2.8 Score=39.06 Aligned_cols=106 Identities=16% Similarity=0.077 Sum_probs=66.3
Q ss_pred ccEEEEeCCCCcchhhhhcc--CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHH
Q 019738 119 EAQVVLLGAGMDTRAYRLNC--LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEK 195 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~--~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~ 195 (336)
...|+.+|||--...+.+.. ....+++-+|. |+.++.-++.+.... -.+..++..|+.+..+
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g------------~~~v~~~~~d~~~l~~--- 142 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG------------YTNVEFRLGEIEALPV--- 142 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC------------CCCEEEEEcchhhCCC---
Confidence 45899999998654433332 23457888887 676666555544321 1356677777654321
Q ss_pred hhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccC
Q 019738 196 LQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMN 247 (336)
Q Consensus 196 L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~ 247 (336)
...+| -++++.+++.+.+. ..++++.+.+.+.+|+.+++.|+..
T Consensus 143 -~~~~f-----D~Vi~~~v~~~~~d--~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 143 -ADNSV-----DVIISNCVINLSPD--KERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred -CCCce-----eEEEEcCcccCCCC--HHHHHHHHHHHcCCCcEEEEEEeec
Confidence 11122 26777888776543 3567888888888888888888764
No 37
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=90.11 E-value=4.6 Score=36.72 Aligned_cols=112 Identities=12% Similarity=-0.039 Sum_probs=68.3
Q ss_pred cEEEEeCCCCcchhhhhccCCCceEEEcch-HHHHHHHHHHHHhhhccCCC-C--CCCccCCCcEEEEeccCCCChhhHH
Q 019738 120 AQVVLLGAGMDTRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDE-Q--QHPRMTAKSLTTVAADIRENDWLEK 195 (336)
Q Consensus 120 ~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~-~--~~~~l~s~~y~~i~~DL~d~~~~~~ 195 (336)
..|+.+|||.-.-+-.|.. .+..++=||+ |..++. . ..+.+..... . ....-...+++++-+|+.+.+..
T Consensus 36 ~rvLd~GCG~G~da~~LA~-~G~~V~gvD~S~~Ai~~-~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-- 109 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAE-QGHRVLGVELSEIAVEQ-F--FAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA-- 109 (213)
T ss_pred CeEEEeCCCchhHHHHHHh-CCCeEEEEeCCHHHHHH-H--HHHcCCCcceeccccceeeecCceEEEEccCCCCCcc--
Confidence 5899999999887777775 5788999998 554442 1 1111100000 0 00000124678888898864320
Q ss_pred hhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEE
Q 019738 196 LQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLA 243 (336)
Q Consensus 196 L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~ 243 (336)
.. ..--+++--++++-++++.-...++.+.+.+.+|+.+++.
T Consensus 110 ~~------~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 110 DL------GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred cC------CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 00 1112344446778999999999999999999888754444
No 38
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=90.02 E-value=6.6 Score=35.26 Aligned_cols=95 Identities=16% Similarity=0.052 Sum_probs=61.4
Q ss_pred ccEEEEeCCCCcchhhhhccCCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHhh
Q 019738 119 EAQVVLLGAGMDTRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQ 197 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L~ 197 (336)
...|+.+|||.=.....+... +..++-+|. |++++.-++.+..... ..+..++.+|+.+..
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~-----------~~~i~~~~~d~~~~~------ 117 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDV-----------AGNVEFEVNDLLSLC------ 117 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEECChhhCC------
Confidence 568999999998877666542 345666665 6666655555543310 135677777876532
Q ss_pred hcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCc
Q 019738 198 LSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLV 237 (336)
Q Consensus 198 ~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~g 237 (336)
+.--++++-.++.|++++....+++.+.+...++
T Consensus 118 ------~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~ 151 (219)
T TIGR02021 118 ------GEFDIVVCMDVLIHYPASDMAKALGHLASLTKER 151 (219)
T ss_pred ------CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCC
Confidence 1223555555678888888888999998776654
No 39
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=89.64 E-value=7.9 Score=37.60 Aligned_cols=116 Identities=16% Similarity=0.037 Sum_probs=69.8
Q ss_pred ccEEEEeCCCCcchhhhhc-----cCCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChh
Q 019738 119 EAQVVLLGAGMDTRAYRLN-----CLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDW 192 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~-----~~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~ 192 (336)
...+|.||||--+.--.|- ....++|+=||. .+.++.-.+.|.... .| .=..+-|.+|+.+.
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~--~p--------~l~v~~l~gdy~~~-- 144 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN--FS--------HVRCAGLLGTYDDG-- 144 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc--CC--------CeEEEEEEecHHHH--
Confidence 4589999999766532221 123588999997 345444444444110 01 01334577788753
Q ss_pred hHHhhhcCCCCCCcEEEEeec-cccccChHHHHHHHHHHHH-hCCC-ceEEEEEeccC
Q 019738 193 LEKLQLSGYKPEKNTVWVLEG-IIYYLLDIHAMQVLKLIAD-KCNL-VHTVLLADFMN 247 (336)
Q Consensus 193 ~~~L~~~g~d~~~Ptl~i~EG-vl~YL~~~~~~~Ll~~l~~-~~~~-gs~~l~~D~~~ 247 (336)
++.|... ..+..|.++++-| .+--++++++..+|+.+++ ...+ +.-+|.+|...
T Consensus 145 l~~l~~~-~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k 201 (319)
T TIGR03439 145 LAWLKRP-ENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCK 201 (319)
T ss_pred Hhhcccc-cccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCC
Confidence 2222211 0134577888888 6677999999999999998 6644 44445578764
No 40
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=89.63 E-value=8.2 Score=37.33 Aligned_cols=185 Identities=16% Similarity=0.219 Sum_probs=97.8
Q ss_pred HHHHHhhcCCCccEEEEeCCCCcchhhhhccCCCceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccC
Q 019738 108 IEAALNSFNSREAQVVLLGAGMDTRAYRLNCLKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADI 187 (336)
Q Consensus 108 v~~fl~~~~~g~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL 187 (336)
+...+.... .+.|+.+|||-==-.||+...+.-.++=+|--...-..-+.++.--.. ......++.-+
T Consensus 107 l~p~l~~L~--gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~----------~~~~~~lplgv 174 (315)
T PF08003_consen 107 LLPHLPDLK--GKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQ----------DPPVFELPLGV 174 (315)
T ss_pred HHhhhCCcC--CCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCC----------CccEEEcCcch
Confidence 445554442 468999999998888999864445677888544333333344432110 12344454332
Q ss_pred CCChhhHHhhh-cCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccC-cc--c--------ccccC
Q 019738 188 RENDWLEKLQL-SGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMN-QP--S--------TTLSS 255 (336)
Q Consensus 188 ~d~~~~~~L~~-~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~-~~--~--------~~~~~ 255 (336)
. .|.. ..|| ++++-|||+++.. .-..|+.+.+...+|+. ++.|.+- .. . ...++
T Consensus 175 E------~Lp~~~~FD-----tVF~MGVLYHrr~--Pl~~L~~Lk~~L~~gGe-LvLETlvi~g~~~~~L~P~~rYa~m~ 240 (315)
T PF08003_consen 175 E------DLPNLGAFD-----TVFSMGVLYHRRS--PLDHLKQLKDSLRPGGE-LVLETLVIDGDENTVLVPEDRYAKMR 240 (315)
T ss_pred h------hccccCCcC-----EEEEeeehhccCC--HHHHHHHHHHhhCCCCE-EEEEEeeecCCCceEEccCCcccCCC
Confidence 2 2221 2365 6889999999653 33445556665555554 4444321 11 1 11122
Q ss_pred Ce-eeecCCCcccccCCCCcceeeeccCCCcc----cccCCCCCccchhhhccc--CCCCcCCCCCCCCCceeEE
Q 019738 256 SI-FHFSSDWPDRLLPTLGFSNVRLSQIGDPD----AHFGLMNDPLNLFNKLRS--LPRSVQTHPDDGTPCRRLY 323 (336)
Q Consensus 256 a~-f~~~~d~~e~~~~~~gF~~~m~~~~~e~~----~~f~~~~~pl~~~~~~~~--~~~~~~~~p~~~~~~~R~~ 323 (336)
.. |.-.+.-...|+...||..+.+.+...-. +.-.|... -.+-|-+.. ..++|++|| ++ +|.+
T Consensus 241 nv~FiPs~~~L~~wl~r~gF~~v~~v~~~~Tt~~EQR~T~Wm~~-~SL~dFLDp~d~~~TiEGyP---AP-~Ra~ 310 (315)
T PF08003_consen 241 NVWFIPSVAALKNWLERAGFKDVRCVDVSPTTIEEQRKTDWMDF-QSLEDFLDPNDPSKTIEGYP---AP-KRAY 310 (315)
T ss_pred ceEEeCCHHHHHHHHHHcCCceEEEecCccCCHHHhccCCCcCc-ccHHHhcCCCCCCCcccCCC---Cc-eEEE
Confidence 22 32233344677789999999886654222 11122211 122233332 248899998 33 5666
No 41
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=89.18 E-value=8.5 Score=35.11 Aligned_cols=144 Identities=15% Similarity=0.070 Sum_probs=82.6
Q ss_pred cEEEEeCCCCcchhhhhccCCCceEEEcchH-HHHHHHHHHHHhhhccCC--C-CCCCccCCCcEEEEeccCCCChhhHH
Q 019738 120 AQVVLLGAGMDTRAYRLNCLKESDVFEVDFS-QVLQVKTALIQTAMEFGD--E-QQHPRMTAKSLTTVAADIRENDWLEK 195 (336)
Q Consensus 120 ~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~P-~vi~~K~~~l~~~~~~~~--~-~~~~~l~s~~y~~i~~DL~d~~~~~~ 195 (336)
..|+.+|||.-.-+-.|.. .+..++=||+- .-++. . ..+.+.... . .......+.+.+++-+|+.+... .
T Consensus 39 ~rvL~~gCG~G~da~~LA~-~G~~V~avD~s~~Ai~~-~--~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~--~ 112 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAE-QGHEVLGVELSELAVEQ-F--FAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA--A 112 (218)
T ss_pred CeEEEeCCCChHhHHHHHh-CCCeEEEEccCHHHHHH-H--HHHcCCCccccccccccccccCceEEEECcccCCCc--c
Confidence 5899999999888888876 57888999984 44432 1 111110000 0 00001123466777788876421 0
Q ss_pred hhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEE--EeccCcccccccCCeeeecCCCcccccCCCC
Q 019738 196 LQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLL--ADFMNQPSTTLSSSIFHFSSDWPDRLLPTLG 273 (336)
Q Consensus 196 L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~--~D~~~~~~~~~~~a~f~~~~d~~e~~~~~~g 273 (336)
+...=.+++-.++++.++++.-.+.++.+.+.+.+|+..++ +.+ ++.. ..+-+|....++.++.+. .+
T Consensus 113 ------~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~-~~~~--~~gPp~~~~~~el~~~~~-~~ 182 (218)
T PRK13255 113 ------DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDY-PQEE--LAGPPFSVSDEEVEALYA-GC 182 (218)
T ss_pred ------cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEe-CCcc--CCCCCCCCCHHHHHHHhc-CC
Confidence 01122567778888999999999999999999988754333 333 2221 123345444344455553 22
Q ss_pred cceeee
Q 019738 274 FSNVRL 279 (336)
Q Consensus 274 F~~~m~ 279 (336)
|....+
T Consensus 183 ~~i~~~ 188 (218)
T PRK13255 183 FEIELL 188 (218)
T ss_pred ceEEEe
Confidence 555544
No 42
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=89.14 E-value=8.5 Score=34.68 Aligned_cols=106 Identities=16% Similarity=0.125 Sum_probs=64.4
Q ss_pred ccEEEEeCCCCcchhhhhcc--CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHH
Q 019738 119 EAQVVLLGAGMDTRAYRLNC--LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEK 195 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~--~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~ 195 (336)
...|+.+|||.=.....+.. ++...++-+|. |++++.-++.+.... .+++.++..|..+...
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------------~~~v~~~~~d~~~~~~--- 110 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG------------LHNVELVHGNAMELPF--- 110 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC------------CCceEEEEechhcCCC---
Confidence 35899999998776666643 23456666666 666665555544321 1366778888765321
Q ss_pred hhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccC
Q 019738 196 LQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMN 247 (336)
Q Consensus 196 L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~ 247 (336)
....|| ++++-.++.+++. ..++++.+.+.+.+|+.+++.|...
T Consensus 111 -~~~~fD-----~V~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 111 -DDNSFD-----YVTIGFGLRNVPD--YMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred -CCCCcc-----EEEEecccccCCC--HHHHHHHHHHHcCcCeEEEEEECCC
Confidence 111233 3444444555543 3578888888888888777777543
No 43
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=88.32 E-value=5.3 Score=39.10 Aligned_cols=103 Identities=15% Similarity=0.131 Sum_probs=80.4
Q ss_pred CccEEEEeCCCCcchhhhhcc-CCCceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHh
Q 019738 118 REAQVVLLGAGMDTRAYRLNC-LKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKL 196 (336)
Q Consensus 118 g~~QVV~LGaGlDTr~~RL~~-~~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L 196 (336)
+....|.+|+|.=+..=++.. .+.+.-++.|+|.|++.+..+- . ....+.+|..+. +
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~---------------gV~~v~gdmfq~-----~ 234 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--P---------------GVEHVAGDMFQD-----T 234 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--C---------------Ccceeccccccc-----C
Confidence 367899999998777655543 3679999999999998876542 1 135678887752 2
Q ss_pred hhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccCcc
Q 019738 197 QLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMNQP 249 (336)
Q Consensus 197 ~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~~~ 249 (336)
.+ .- ++...-+|.-++.++..++|+.+.+.++++..+++-|.+.+.
T Consensus 235 P~------~d-aI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 235 PK------GD-AIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred CC------cC-eEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 21 11 888899999999999999999999999998889999986553
No 44
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=88.31 E-value=9.8 Score=34.08 Aligned_cols=94 Identities=16% Similarity=0.160 Sum_probs=59.2
Q ss_pred ccEEEEeCCCCcchhhhhccCCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHhh
Q 019738 119 EAQVVLLGAGMDTRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQ 197 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L~ 197 (336)
...|+.+|||.=.....+.. ....++-+|. +++++.-++.+...+. ..+..++.+|+...
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~-~~~~v~~~D~s~~~i~~a~~~~~~~~~-----------~~~i~~~~~d~~~~------- 124 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLAR-RGAKVVASDISPQMVEEARERAPEAGL-----------AGNITFEVGDLESL------- 124 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHhcCC-----------ccCcEEEEcCchhc-------
Confidence 45899999998776666654 2344666665 5555555544443311 13567777774321
Q ss_pred hcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCC
Q 019738 198 LSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNL 236 (336)
Q Consensus 198 ~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~ 236 (336)
...|| ++++-.++.+++.+....+++.+.+..++
T Consensus 125 ~~~fD-----~v~~~~~l~~~~~~~~~~~l~~l~~~~~~ 158 (230)
T PRK07580 125 LGRFD-----TVVCLDVLIHYPQEDAARMLAHLASLTRG 158 (230)
T ss_pred cCCcC-----EEEEcchhhcCCHHHHHHHHHHHHhhcCC
Confidence 11233 56666777788888999999999887644
No 45
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=88.27 E-value=6.2 Score=39.23 Aligned_cols=101 Identities=12% Similarity=0.023 Sum_probs=66.5
Q ss_pred ccEEEEeCCCCcchhhhhccCCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHhh
Q 019738 119 EAQVVLLGAGMDTRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQ 197 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L~ 197 (336)
...|+.+|||.=.....+....+++++-+|. |+.++.=++.+.. -...++..|..+.
T Consensus 168 g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~---------------l~v~~~~~D~~~l------- 225 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG---------------LPVEIRLQDYRDL------- 225 (383)
T ss_pred CCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc---------------CeEEEEECchhhc-------
Confidence 3589999999888877776533567777776 6655544433321 1234555555431
Q ss_pred hcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEecc
Q 019738 198 LSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFM 246 (336)
Q Consensus 198 ~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~ 246 (336)
...|| ++++-+++.++.......+++.+.+.+.+|+.+++.++.
T Consensus 226 ~~~fD-----~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 226 NGQFD-----RIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred CCCCC-----EEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 11233 456667788888888889999999999888876665543
No 46
>PRK08317 hypothetical protein; Provisional
Probab=88.08 E-value=13 Score=32.89 Aligned_cols=103 Identities=17% Similarity=0.111 Sum_probs=63.0
Q ss_pred ccEEEEeCCCCcchhhhhcc--CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHH
Q 019738 119 EAQVVLLGAGMDTRAYRLNC--LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEK 195 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~--~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~ 195 (336)
...|+.+|||.-.....+.. .+..+++-+|. |+.++.-++..... ..+..++..|+.+..+.
T Consensus 20 ~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-------------~~~~~~~~~d~~~~~~~-- 84 (241)
T PRK08317 20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-------------GPNVEFVRGDADGLPFP-- 84 (241)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-------------CCceEEEecccccCCCC--
Confidence 46899999998776655543 13456666666 44443333221111 13567788887653321
Q ss_pred hhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEec
Q 019738 196 LQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADF 245 (336)
Q Consensus 196 L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~ 245 (336)
...--++++-.++.++.. ...+++.+.+...+|+.+++.+.
T Consensus 85 -------~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 85 -------DGSFDAVRSDRVLQHLED--PARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred -------CCCceEEEEechhhccCC--HHHHHHHHHHHhcCCcEEEEEec
Confidence 122346777777788763 56678888888888877666654
No 47
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=87.52 E-value=13 Score=36.01 Aligned_cols=98 Identities=14% Similarity=0.058 Sum_probs=60.6
Q ss_pred ccEEEEeCCCCcchhhhhccCCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHhh
Q 019738 119 EAQVVLLGAGMDTRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQ 197 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L~ 197 (336)
...|+.+|||-=.....+.. .+..++-+|+ +++++.-++.++...... ....+..+...|+.+ +
T Consensus 145 ~~~VLDlGcGtG~~a~~la~-~g~~V~gvD~S~~ml~~A~~~~~~~~~~~-------~~~~~~~f~~~Dl~~------l- 209 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLAL-EGAIVSASDISAAMVAEAERRAKEALAAL-------PPEVLPKFEANDLES------L- 209 (315)
T ss_pred CCEEEEecCCCCHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhccccc-------ccccceEEEEcchhh------c-
Confidence 35899999999877777765 3567888887 666655544444321000 001245566667643 1
Q ss_pred hcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCC
Q 019738 198 LSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNL 236 (336)
Q Consensus 198 ~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~ 236 (336)
...|| ++++-.++++++.+....+++.+....++
T Consensus 210 ~~~fD-----~Vv~~~vL~H~p~~~~~~ll~~l~~l~~g 243 (315)
T PLN02585 210 SGKYD-----TVTCLDVLIHYPQDKADGMIAHLASLAEK 243 (315)
T ss_pred CCCcC-----EEEEcCEEEecCHHHHHHHHHHHHhhcCC
Confidence 11244 56666677778888888999999876543
No 48
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=87.14 E-value=13 Score=33.16 Aligned_cols=100 Identities=14% Similarity=0.151 Sum_probs=60.6
Q ss_pred ccEEEEeCCCCcchhhhhcc-CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHh
Q 019738 119 EAQVVLLGAGMDTRAYRLNC-LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKL 196 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~-~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L 196 (336)
...|+.+|||--.....+.. .+..+++-+|. |+.++.-++.+. ++..++.+|+.+..+
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----------------~~~~~~~~d~~~~~~---- 94 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----------------ENVQFICGDAEKLPL---- 94 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----------------CCCeEEecchhhCCC----
Confidence 35799999998876555543 23455566665 444433322221 244667777765322
Q ss_pred hhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEec
Q 019738 197 QLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADF 245 (336)
Q Consensus 197 ~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~ 245 (336)
....--++++-.++.|+.. ...+++.+.+...+|+.+++.++
T Consensus 95 -----~~~~fD~vi~~~~l~~~~~--~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 95 -----EDSSFDLIVSNLALQWCDD--LSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred -----CCCceeEEEEhhhhhhccC--HHHHHHHHHHHcCCCcEEEEEeC
Confidence 1223457778888888743 56788888888877776665544
No 49
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=86.56 E-value=8.4 Score=34.43 Aligned_cols=123 Identities=11% Similarity=0.059 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccEEEEeCCCCcchhhhhccCCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCcc
Q 019738 97 LAIRTLWFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRM 175 (336)
Q Consensus 97 ~~~Rt~~iD~~v~~fl~~~~~g~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l 175 (336)
-..|..++.+.+... ..+. ....|+.+|||.-+....+... ...++-+|. +.+++..++.+.....
T Consensus 26 ~~~~~~~i~~~~~~~-~~~~-~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~---------- 92 (224)
T TIGR01983 26 NPLRLDYIRDTIRKN-KKPL-FGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPL---------- 92 (224)
T ss_pred hHHHHHHHHHHHHhc-ccCC-CCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCC----------
Confidence 345666666666543 1111 2458999999987766666542 334556665 5555555554443310
Q ss_pred CCCcEEEEeccCCCChhhHHhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEe
Q 019738 176 TAKSLTTVAADIRENDWLEKLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLAD 244 (336)
Q Consensus 176 ~s~~y~~i~~DL~d~~~~~~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D 244 (336)
.+.+++..|+.+ +.. . .+..--++++-.++.++. ....+++.+.+...+|+.+++.+
T Consensus 93 --~~~~~~~~d~~~--~~~---~---~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 93 --LKIEYRCTSVED--LAE---K---GAKSFDVVTCMEVLEHVP--DPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred --CceEEEeCCHHH--hhc---C---CCCCccEEEehhHHHhCC--CHHHHHHHHHHhcCCCcEEEEEe
Confidence 134555555542 111 0 012233566666777765 34578888888887776655544
No 50
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=86.41 E-value=6 Score=32.89 Aligned_cols=109 Identities=14% Similarity=0.145 Sum_probs=65.4
Q ss_pred HHHHHHHHHhhcCCCccEEEEeCCCCcchhhhhccCCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEE
Q 019738 104 FDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTT 182 (336)
Q Consensus 104 iD~~v~~fl~~~~~g~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~ 182 (336)
+.+.+.++....+ ....|+.+|||.=....-+.. .+.+++=+|. |.+++. .. ...
T Consensus 9 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~-~~~~~~g~D~~~~~~~~------~~----------------~~~ 64 (161)
T PF13489_consen 9 YADLLERLLPRLK-PGKRVLDIGCGTGSFLRALAK-RGFEVTGVDISPQMIEK------RN----------------VVF 64 (161)
T ss_dssp HHHHHHHHHTCTT-TTSEEEEESSTTSHHHHHHHH-TTSEEEEEESSHHHHHH------TT----------------SEE
T ss_pred HHHHHHHHhcccC-CCCEEEEEcCCCCHHHHHHHH-hCCEEEEEECCHHHHhh------hh----------------hhh
Confidence 3455656654222 356999999998654444433 2447777776 555544 11 011
Q ss_pred EeccCCCChhhHHhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccC
Q 019738 183 VAADIRENDWLEKLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMN 247 (336)
Q Consensus 183 i~~DL~d~~~~~~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~ 247 (336)
...+..+ + .. ..+.--++++-.++.|++ +...+|+.+.+...+|+.+++.+...
T Consensus 65 ~~~~~~~--~--~~-----~~~~fD~i~~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 65 DNFDAQD--P--PF-----PDGSFDLIICNDVLEHLP--DPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp EEEECHT--H--HC-----HSSSEEEEEEESSGGGSS--HHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hhhhhhh--h--hc-----cccchhhHhhHHHHhhcc--cHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 1111111 0 11 123445788889999999 48899999999998877766666543
No 51
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=86.30 E-value=6.6 Score=39.79 Aligned_cols=139 Identities=14% Similarity=0.183 Sum_probs=81.9
Q ss_pred ccEEEEeCCCCcchhhhhccCCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHhh
Q 019738 119 EAQVVLLGAGMDTRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQ 197 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L~ 197 (336)
...|+.+|||.=.....+....+.+++=+|. ++.++.-++..... ..+..++..|+.+..+ .
T Consensus 267 ~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~-------------~~~v~~~~~d~~~~~~----~ 329 (475)
T PLN02336 267 GQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR-------------KCSVEFEVADCTKKTY----P 329 (475)
T ss_pred CCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC-------------CCceEEEEcCcccCCC----C
Confidence 4589999999877666665423567777776 55544322221111 1356777888765322 1
Q ss_pred hcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccCcccccc-------cCCeeee-cCCCccccc
Q 019738 198 LSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMNQPSTTL-------SSSIFHF-SSDWPDRLL 269 (336)
Q Consensus 198 ~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~~~~~~~-------~~a~f~~-~~d~~e~~~ 269 (336)
.+.=-++++-+++.|++. ...+++.+.+.+.+|+.+++.|+........ ....+.. ...+-.+++
T Consensus 330 -----~~~fD~I~s~~~l~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l 402 (475)
T PLN02336 330 -----DNSFDVIYSRDTILHIQD--KPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQML 402 (475)
T ss_pred -----CCCEEEEEECCcccccCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 122347788888888863 4588999999998888888887754321100 0000111 112225556
Q ss_pred CCCCcceeeecc
Q 019738 270 PTLGFSNVRLSQ 281 (336)
Q Consensus 270 ~~~gF~~~m~~~ 281 (336)
...||..+...+
T Consensus 403 ~~aGF~~i~~~d 414 (475)
T PLN02336 403 KDAGFDDVIAED 414 (475)
T ss_pred HHCCCeeeeeec
Confidence 788898875543
No 52
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=86.27 E-value=4.5 Score=37.36 Aligned_cols=111 Identities=15% Similarity=0.178 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCccEEEEeCCCCcchhhhhccC-CCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccC
Q 019738 99 IRTLWFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNCL-KESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMT 176 (336)
Q Consensus 99 ~Rt~~iD~~v~~fl~~~~~g~~QVV~LGaGlDTr~~RL~~~-~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~ 176 (336)
.|.+.+.+++.. +... ....|+.+|||--.....+... ++.+++-+|. |.+++.=++
T Consensus 13 ~~~~~~~~ll~~-l~~~--~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~------------------ 71 (255)
T PRK14103 13 HRGRPFYDLLAR-VGAE--RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE------------------ 71 (255)
T ss_pred HhhCHHHHHHHh-CCCC--CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh------------------
Confidence 455555555543 3322 2468999999999887777642 3567888887 666543211
Q ss_pred CCcEEEEeccCCCChhhHHhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEE
Q 019738 177 AKSLTTVAADIRENDWLEKLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLA 243 (336)
Q Consensus 177 s~~y~~i~~DL~d~~~~~~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~ 243 (336)
.+..++.+|+.+ +. ....|| ++++-.++++++. ...+++.+.+.+.+|+.+++.
T Consensus 72 -~~~~~~~~d~~~--~~---~~~~fD-----~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 72 -RGVDARTGDVRD--WK---PKPDTD-----VVVSNAALQWVPE--HADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred -cCCcEEEcChhh--CC---CCCCce-----EEEEehhhhhCCC--HHHHHHHHHHhCCCCcEEEEE
Confidence 123466677653 21 111233 6777788888863 467888888888777765543
No 53
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=85.33 E-value=6.7 Score=36.07 Aligned_cols=95 Identities=16% Similarity=0.170 Sum_probs=59.6
Q ss_pred ccEEEEeCCCCcchhhhhcc-CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHh
Q 019738 119 EAQVVLLGAGMDTRAYRLNC-LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKL 196 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~-~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L 196 (336)
...|+.+|||--.....+.. .++.+++-||. |++++.-++.+ .+..++..|+.+ |.
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----------------~~~~~~~~d~~~--~~--- 89 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----------------PDCQFVEADIAS--WQ--- 89 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----------------CCCeEEECchhc--cC---
Confidence 46899999998877766654 23567888887 56554433322 234567777753 21
Q ss_pred hhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEE
Q 019738 197 QLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLL 242 (336)
Q Consensus 197 ~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~ 242 (336)
.. ..--++++-.++.+++. ...+++.+.+.+.+|+.+++
T Consensus 90 ~~-----~~fD~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~~~~ 128 (258)
T PRK01683 90 PP-----QALDLIFANASLQWLPD--HLELFPRLVSLLAPGGVLAV 128 (258)
T ss_pred CC-----CCccEEEEccChhhCCC--HHHHHHHHHHhcCCCcEEEE
Confidence 11 12225666677788864 45788888888877765443
No 54
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=85.31 E-value=11 Score=35.32 Aligned_cols=115 Identities=11% Similarity=0.103 Sum_probs=65.8
Q ss_pred ccEEEEeCCCCcchhhhhc----c--C----CCceEEEcch-HHHHHHHHHHH-Hhhh-ccCC----------CCCCCcc
Q 019738 119 EAQVVLLGAGMDTRAYRLN----C--L----KESDVFEVDF-SQVLQVKTALI-QTAM-EFGD----------EQQHPRM 175 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~----~--~----~~~~~~EvD~-P~vi~~K~~~l-~~~~-~~~~----------~~~~~~l 175 (336)
...|.++|||.=--+|-|. . + .+..++=+|. +++++.-++-+ .... ...| ......+
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 4689999999986555332 1 1 2466777776 55554333322 1110 0000 0000000
Q ss_pred ---CCCcEEEEeccCCCChhhHHhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEE
Q 019738 176 ---TAKSLTTVAADIRENDWLEKLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLL 242 (336)
Q Consensus 176 ---~s~~y~~i~~DL~d~~~~~~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~ 242 (336)
...++++...|+.+... . ...--++++-.|++|++++...++++.+.+.+.+|+.+++
T Consensus 180 ~~~ir~~V~F~~~dl~~~~~----~-----~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~l 240 (264)
T smart00138 180 KPELKERVRFAKHNLLAESP----P-----LGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFL 240 (264)
T ss_pred ChHHhCcCEEeeccCCCCCC----c-----cCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 01245566666665322 1 1122477778899999999999999999999988876443
No 55
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=85.12 E-value=8.5 Score=35.51 Aligned_cols=108 Identities=13% Similarity=0.138 Sum_probs=65.6
Q ss_pred ccEEEEeCCCCcchhhhhcc--CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHH
Q 019738 119 EAQVVLLGAGMDTRAYRLNC--LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEK 195 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~--~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~ 195 (336)
...|+.+|||.=.....+.. .++..++=+|+ |++++.=++.+.+.+. .+..++.+|..+....+
T Consensus 48 g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~------------~~i~~v~~da~~lp~~d- 114 (233)
T PF01209_consen 48 GDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL------------QNIEFVQGDAEDLPFPD- 114 (233)
T ss_dssp --EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--------------SEEEEE-BTTB--S-T-
T ss_pred CCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC------------CCeeEEEcCHHHhcCCC-
Confidence 35899999999877777754 34678999998 7887777777665421 37788999988754322
Q ss_pred hhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccCcc
Q 019738 196 LQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMNQP 249 (336)
Q Consensus 196 L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~~~ 249 (336)
.-|| .++++= .+..++. ..+.++.+.+.+.+|+.+++.|+..+.
T Consensus 115 ---~sfD----~v~~~f-glrn~~d--~~~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 115 ---NSFD----AVTCSF-GLRNFPD--RERALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp ---T-EE----EEEEES--GGG-SS--HHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred ---Ccee----EEEHHh-hHHhhCC--HHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence 1122 333333 3444442 456788888888888888999986554
No 56
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=84.69 E-value=8.4 Score=36.81 Aligned_cols=108 Identities=13% Similarity=0.039 Sum_probs=82.2
Q ss_pred ccEEEEeCCCCcchhhhhccCCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHhh
Q 019738 119 EAQVVLLGAGMDTRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQ 197 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L~ 197 (336)
...|+.+|||-=...-+....-+++++=|++ ++..+.=++.+.+.+- ..+.+++-.|.++..- .
T Consensus 73 G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl-----------~~~v~v~l~d~rd~~e--~-- 137 (283)
T COG2230 73 GMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL-----------EDNVEVRLQDYRDFEE--P-- 137 (283)
T ss_pred CCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC-----------CcccEEEecccccccc--c--
Confidence 4589999999999888887644799999998 6666666666665532 1467888888887421 1
Q ss_pred hcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccCcc
Q 019738 198 LSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMNQP 249 (336)
Q Consensus 198 ~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~~~ 249 (336)
|| =+++=|.+-|+..+.....|+.+.+.+++|+.+++.++..+.
T Consensus 138 ---fD-----rIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 138 ---FD-----RIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred ---cc-----eeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 33 278889999999999999999999999998877776665443
No 57
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=84.57 E-value=8.4 Score=35.33 Aligned_cols=99 Identities=12% Similarity=0.036 Sum_probs=58.2
Q ss_pred ccEEEEeCCCCcchhhhhccCCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHhh
Q 019738 119 EAQVVLLGAGMDTRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQ 197 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L~ 197 (336)
...|+.+|||.-.....+.. .+..++-+|. |++++.-++... ...++.+|+.+..+ .
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~-~~~~v~~~D~s~~~l~~a~~~~~-----------------~~~~~~~d~~~~~~----~ 100 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRE-RGSQVTALDLSPPMLAQARQKDA-----------------ADHYLAGDIESLPL----A 100 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHH-cCCeEEEEECCHHHHHHHHhhCC-----------------CCCEEEcCcccCcC----C
Confidence 45799999998655444543 3467888887 666654333211 11356667754321 1
Q ss_pred hcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEecc
Q 019738 198 LSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFM 246 (336)
Q Consensus 198 ~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~ 246 (336)
+..| -++++-.++.+++ +...+|+.+.+...+|+.+++..+.
T Consensus 101 ~~~f-----D~V~s~~~l~~~~--d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 101 TATF-----DLAWSNLAVQWCG--NLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred CCcE-----EEEEECchhhhcC--CHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 1112 2455555555554 3567888888888887766655443
No 58
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=84.50 E-value=4.9 Score=39.21 Aligned_cols=138 Identities=14% Similarity=0.063 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccEEEEeCC--CCcchhhhhccCCCceEEEcchHHHHHHHHHHHHhhhccCCCCCCCc
Q 019738 97 LAIRTLWFDSQIEAALNSFNSREAQVVLLGA--GMDTRAYRLNCLKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPR 174 (336)
Q Consensus 97 ~~~Rt~~iD~~v~~fl~~~~~g~~QVV~LGa--GlDTr~~RL~~~~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~ 174 (336)
-|+-+..|...+....... ....|+.||| |-|..=|.-.......-+|++.-.+-+.+++. .+........ ...
T Consensus 43 NwvKs~LI~~~~~~~~~~~--~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry-~~~~~~~~~~-~~~ 118 (331)
T PF03291_consen 43 NWVKSVLIQKYAKKVKQNR--PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERY-KQLKKRNNSK-QYR 118 (331)
T ss_dssp HHHHHHHHHHHCHCCCCTT--TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHH-HHHHTSTT-H-TSE
T ss_pred HHHHHHHHHHHHHhhhccC--CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHH-HHhccccccc-ccc
Confidence 4566666555443221111 3569999999 58998888764333344455545555555444 3222110000 000
Q ss_pred cCCCcEEEEeccCCCChhhHHhhhcCCCCCCcEEEEeecccccc--ChHHHHHHHHHHHHhCCCceEEEE
Q 019738 175 MTAKSLTTVAADIRENDWLEKLQLSGYKPEKNTVWVLEGIIYYL--LDIHAMQVLKLIADKCNLVHTVLL 242 (336)
Q Consensus 175 l~s~~y~~i~~DL~d~~~~~~L~~~g~d~~~Ptl~i~EGvl~YL--~~~~~~~Ll~~l~~~~~~gs~~l~ 242 (336)
. .-...++.+|.......+.+... ...==++.+.-.+.|+ +++.++.+|+.+++.+.+|+.+|.
T Consensus 119 ~-~f~a~f~~~D~f~~~l~~~~~~~---~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIg 184 (331)
T PF03291_consen 119 F-DFIAEFIAADCFSESLREKLPPR---SRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIG 184 (331)
T ss_dssp E-CCEEEEEESTTCCSHHHCTSSST---TS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred c-cchhheeccccccchhhhhcccc---CCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 0 01235667776654333333221 0112478889999994 477788899999999988876443
No 59
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=84.14 E-value=29 Score=30.55 Aligned_cols=104 Identities=14% Similarity=0.148 Sum_probs=62.6
Q ss_pred ccEEEEeCCCCcchhhhhcc--CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHH
Q 019738 119 EAQVVLLGAGMDTRAYRLNC--LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEK 195 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~--~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~ 195 (336)
...|+.+|||.-.....+.. +...+++=+|. |+.++.-++.+. . ..+.+++..|+.+..
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~-------------~~~i~~~~~d~~~~~---- 101 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L-------------PLNIEFIQADAEALP---- 101 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c-------------CCCceEEecchhcCC----
Confidence 46899999998766555543 22145665565 555555444433 1 134567777876532
Q ss_pred hhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccC
Q 019738 196 LQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMN 247 (336)
Q Consensus 196 L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~ 247 (336)
+..+.--++++-.++.+++ +...+++.+.+...+|+.+++.++..
T Consensus 102 -----~~~~~~D~i~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 102 -----FEDNSFDAVTIAFGLRNVT--DIQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred -----CCCCcEEEEEEeeeeCCcc--cHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 1112234555555555554 46688999999888888877777643
No 60
>PRK00811 spermidine synthase; Provisional
Probab=82.06 E-value=26 Score=33.14 Aligned_cols=115 Identities=11% Similarity=0.130 Sum_probs=63.1
Q ss_pred CccEEEEeCCCCcchhhhhcc-C--CCceEEEcchHHHHHHHHHHHHhhhcc---CC-----CCCCC-cc--CCCcEEEE
Q 019738 118 REAQVVLLGAGMDTRAYRLNC-L--KESDVFEVDFSQVLQVKTALIQTAMEF---GD-----EQQHP-RM--TAKSLTTV 183 (336)
Q Consensus 118 g~~QVV~LGaGlDTr~~RL~~-~--~~~~~~EvD~P~vi~~K~~~l~~~~~~---~~-----~~~~~-~l--~s~~y~~i 183 (336)
..+.|+.||||-=.....+.. + ..+..+|+| |++++.-++.+...... .+ ..+.. .+ ...+|-+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid-~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEID-ERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCC-HHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 356899999997666554433 1 368889999 56777666666542110 01 00000 00 13467777
Q ss_pred eccCCCCh----------hhHHhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCC
Q 019738 184 AADIREND----------WLEKLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNL 236 (336)
Q Consensus 184 ~~DL~d~~----------~~~~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~ 236 (336)
=+|+.++. +++.+.+ -+.++. + ++......++.++....+++.+.+.|+.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~-~L~~gG-v-lv~~~~~~~~~~~~~~~i~~tl~~~F~~ 214 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKR-ALKEDG-I-FVAQSGSPFYQADEIKDMHRKLKEVFPI 214 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHH-hcCCCc-E-EEEeCCCcccCHHHHHHHHHHHHHHCCC
Confidence 77776541 1122211 122222 2 3344445566677778888888888765
No 61
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=81.44 E-value=15 Score=32.89 Aligned_cols=104 Identities=11% Similarity=0.033 Sum_probs=57.8
Q ss_pred ccEEEEeCCCCcchhhhhcc-CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhH-H
Q 019738 119 EAQVVLLGAGMDTRAYRLNC-LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLE-K 195 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~-~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~-~ 195 (336)
...|+.+|||.=.....+.. .+..+++-||. |+.++.=++.+...+ ..+..++.+|+.+ .+. .
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~------------~~~v~~~~~d~~~--~l~~~ 106 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG------------LTNLRLLCGDAVE--VLLDM 106 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC------------CCCEEEEecCHHH--HHHHH
Confidence 46899999999988777654 24567777776 556554444444331 1356777777721 122 1
Q ss_pred hhhcCCCCCCcEEEEeeccccccCh------HHHHHHHHHHHHhCCCceEEE
Q 019738 196 LQLSGYKPEKNTVWVLEGIIYYLLD------IHAMQVLKLIADKCNLVHTVL 241 (336)
Q Consensus 196 L~~~g~d~~~Ptl~i~EGvl~YL~~------~~~~~Ll~~l~~~~~~gs~~l 241 (336)
+....|| .+++ -....+... .....+++.+.+.+.+|+.++
T Consensus 107 ~~~~~~D----~V~~-~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~ 153 (202)
T PRK00121 107 FPDGSLD----RIYL-NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIH 153 (202)
T ss_pred cCccccc----eEEE-ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEE
Confidence 2221122 2332 112222221 124678888888887776544
No 62
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=81.30 E-value=3.5 Score=38.11 Aligned_cols=106 Identities=22% Similarity=0.273 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCccEEEEeCCCCc--chhhhhccCCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCcc
Q 019738 99 IRTLWFDSQIEAALNSFNSREAQVVLLGAGMD--TRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRM 175 (336)
Q Consensus 99 ~Rt~~iD~~v~~fl~~~~~g~~QVV~LGaGlD--Tr~~RL~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l 175 (336)
.|+|-..+++.+- .- ....+||.||||-= |...-=.+ +...+.-||- |++++.-++.+.
T Consensus 14 eRtRPa~dLla~V-p~--~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rlp-------------- 75 (257)
T COG4106 14 ERTRPARDLLARV-PL--ERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRLP-------------- 75 (257)
T ss_pred hccCcHHHHHhhC-Cc--cccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhCC--------------
Confidence 5666555554332 11 13579999999854 33222223 4678889997 888887766553
Q ss_pred CCCcEEEEeccCCCChhhHHhhhcCCCCCCc-EEEEeeccccccChHHHHHHHHHHHHhCCCce
Q 019738 176 TAKSLTTVAADIRENDWLEKLQLSGYKPEKN-TVWVLEGIIYYLLDIHAMQVLKLIADKCNLVH 238 (336)
Q Consensus 176 ~s~~y~~i~~DL~d~~~~~~L~~~g~d~~~P-tl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs 238 (336)
+.++..+|+++ | .+..| -++.+-.||.+|+. ..+-+-+++... .+|+
T Consensus 76 ---~~~f~~aDl~~--w---------~p~~~~dllfaNAvlqWlpd-H~~ll~rL~~~L-~Pgg 123 (257)
T COG4106 76 ---DATFEEADLRT--W---------KPEQPTDLLFANAVLQWLPD-HPELLPRLVSQL-APGG 123 (257)
T ss_pred ---CCceecccHhh--c---------CCCCccchhhhhhhhhhccc-cHHHHHHHHHhh-CCCc
Confidence 34677788874 4 33333 46777888888864 344444444444 4444
No 63
>PLN02366 spermidine synthase
Probab=81.04 E-value=36 Score=32.81 Aligned_cols=114 Identities=12% Similarity=0.198 Sum_probs=63.1
Q ss_pred CccEEEEeCCCCcchhhhhcc-C--CCceEEEcchHHHHHHHHHHHHhhhc-cC-C-----CCCCC-cc---CCCcEEEE
Q 019738 118 REAQVVLLGAGMDTRAYRLNC-L--KESDVFEVDFSQVLQVKTALIQTAME-FG-D-----EQQHP-RM---TAKSLTTV 183 (336)
Q Consensus 118 g~~QVV~LGaGlDTr~~RL~~-~--~~~~~~EvD~P~vi~~K~~~l~~~~~-~~-~-----~~~~~-~l---~s~~y~~i 183 (336)
..+.|+.+|||-=.....+.. + ..+..+|+| |+|++.=++.+..... .. + ..+.. .+ ..++|.+|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD-~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEID-KMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECC-HHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 457899999997666554433 2 357889999 7888877776654211 00 0 00000 00 12357777
Q ss_pred eccCCCC----------hhhHHhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCC
Q 019738 184 AADIREN----------DWLEKLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCN 235 (336)
Q Consensus 184 ~~DL~d~----------~~~~~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~ 235 (336)
-+|+.++ ++++.+.+. +.++. +++..+-..|+.++....+++.+.+.|+
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~-L~pgG--vlv~q~~s~~~~~~~~~~i~~tl~~~F~ 228 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARA-LRPGG--VVCTQAESMWLHMDLIEDLIAICRETFK 228 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHh-cCCCc--EEEECcCCcccchHHHHHHHHHHHHHCC
Confidence 7777653 122222221 22222 2333344456677777788888888774
No 64
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=80.89 E-value=40 Score=29.95 Aligned_cols=107 Identities=14% Similarity=0.101 Sum_probs=62.0
Q ss_pred ccEEEEeCCCCcchhhhhcc--CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHH
Q 019738 119 EAQVVLLGAGMDTRAYRLNC--LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEK 195 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~--~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~ 195 (336)
...|+.+|||-=.....+.. +...+++-+|. +..++.-++.+..... ..+..++.+|+.+..
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~~---- 116 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL-----------SGNVEFVQGDAEALP---- 116 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc-----------ccCeEEEecccccCC----
Confidence 35899999998655444433 22467777776 5554444444432210 135677778876532
Q ss_pred hhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccC
Q 019738 196 LQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMN 247 (336)
Q Consensus 196 L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~ 247 (336)
. ....--++++-.++.++. +...+++.+.+...+|+.+++.|...
T Consensus 117 ~-----~~~~~D~I~~~~~l~~~~--~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 117 F-----PDNSFDAVTIAFGLRNVP--DIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred C-----CCCCccEEEEecccccCC--CHHHHHHHHHHhccCCcEEEEEEecC
Confidence 1 111122344444455544 35678888888888888777777644
No 65
>PRK00536 speE spermidine synthase; Provisional
Probab=80.66 E-value=29 Score=32.74 Aligned_cols=119 Identities=13% Similarity=0.082 Sum_probs=77.3
Q ss_pred hhcCCCccEEEEeCCCCcchhhhhcc-CCCceEEEcchHHHHHHHHHHHHhhhccCCC-CC---CCcc--CCCcEEEEec
Q 019738 113 NSFNSREAQVVLLGAGMDTRAYRLNC-LKESDVFEVDFSQVLQVKTALIQTAMEFGDE-QQ---HPRM--TAKSLTTVAA 185 (336)
Q Consensus 113 ~~~~~g~~QVV~LGaGlDTr~~RL~~-~~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~-~~---~~~l--~s~~y~~i~~ 185 (336)
-.|+ ..+.|+++|+|=--....+.. +..+..+||| ++|++.=++.++.....-.+ +- .... ..+.|-.|=+
T Consensus 68 ~~h~-~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID-~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVIIv 145 (262)
T PRK00536 68 CTKK-ELKEVLIVDGFDLELAHQLFKYDTHVDFVQAD-EKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIIC 145 (262)
T ss_pred hhCC-CCCeEEEEcCCchHHHHHHHCcCCeeEEEECC-HHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEEE
Confidence 3465 568999999986655555543 3578999999 68888888877664221000 00 0000 1256888888
Q ss_pred cC-CCChhhHHhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCC
Q 019738 186 DI-RENDWLEKLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNL 236 (336)
Q Consensus 186 DL-~d~~~~~~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~ 236 (336)
|. -+.+..+.+.++ +. .-=+++.++-..|+.++....+.+.+.+.|+.
T Consensus 146 Ds~~~~~fy~~~~~~-L~--~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~ 194 (262)
T PRK00536 146 LQEPDIHKIDGLKRM-LK--EDGVFISVAKHPLLEHVSMQNALKNMGDFFSI 194 (262)
T ss_pred cCCCChHHHHHHHHh-cC--CCcEEEECCCCcccCHHHHHHHHHHHHhhCCc
Confidence 84 444555544433 22 22368888888888999999999999999974
No 66
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=80.36 E-value=22 Score=34.92 Aligned_cols=138 Identities=16% Similarity=0.183 Sum_probs=77.2
Q ss_pred ccEEEEeCCCCcchhhhhcc-CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHh
Q 019738 119 EAQVVLLGAGMDTRAYRLNC-LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKL 196 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~-~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L 196 (336)
...|+.||||.=.....+.. .+..+++=+|. |++++.-++... . .+..++..|+.+..+
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-~--------------~~i~~i~gD~e~lp~---- 174 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-L--------------KECKIIEGDAEDLPF---- 174 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-c--------------cCCeEEeccHHhCCC----
Confidence 45899999998665545432 12345666676 555554333221 1 234567777654321
Q ss_pred hhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccCcc--cccccCCeee-e-cCCCcccccCCC
Q 019738 197 QLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMNQP--STTLSSSIFH-F-SSDWPDRLLPTL 272 (336)
Q Consensus 197 ~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~~~--~~~~~~a~f~-~-~~d~~e~~~~~~ 272 (336)
..+.--++++-+++.|++.. ..+++.+.+.+.+|+.+++.+...+. ..+.-...|. + ..++..+++.+.
T Consensus 175 -----~~~sFDvVIs~~~L~~~~d~--~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~a 247 (340)
T PLN02490 175 -----PTDYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKA 247 (340)
T ss_pred -----CCCceeEEEEcChhhhCCCH--HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHC
Confidence 11223367778888888754 46889999988888776666543321 1100000111 1 113334566788
Q ss_pred CcceeeeccC
Q 019738 273 GFSNVRLSQI 282 (336)
Q Consensus 273 gF~~~m~~~~ 282 (336)
||..+.....
T Consensus 248 GF~~V~i~~i 257 (340)
T PLN02490 248 GFKDVKLKRI 257 (340)
T ss_pred CCeEEEEEEc
Confidence 9998876543
No 67
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=79.11 E-value=25 Score=34.46 Aligned_cols=110 Identities=13% Similarity=0.061 Sum_probs=69.1
Q ss_pred ccEEEEeCCCCcchhhhhccCCCceEEEcchHHH-HHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHhh
Q 019738 119 EAQVVLLGAGMDTRAYRLNCLKESDVFEVDFSQV-LQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQ 197 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~P~v-i~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L~ 197 (336)
..+|..||||-=--..+.+..+--.++-+|..+| |+.-++..+....... .. .=...++.+|=......+.++
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~---~~---~f~a~f~~~Dc~~~~l~d~~e 191 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFK---KF---IFTAVFIAADCFKERLMDLLE 191 (389)
T ss_pred ccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhh---cc---cceeEEEEeccchhHHHHhcc
Confidence 4688899998654444444334457899998765 3333333333321100 00 012478888877644445543
Q ss_pred hcCCCCCCc--EEEEeeccccc--cChHHHHHHHHHHHHhCCCceE
Q 019738 198 LSGYKPEKN--TVWVLEGIIYY--LLDIHAMQVLKLIADKCNLVHT 239 (336)
Q Consensus 198 ~~g~d~~~P--tl~i~EGvl~Y--L~~~~~~~Ll~~l~~~~~~gs~ 239 (336)
++.| -++.++-++.| -+.+.++-+++.+++.+.+|+.
T Consensus 192 -----~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~ 232 (389)
T KOG1975|consen 192 -----FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGV 232 (389)
T ss_pred -----CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcE
Confidence 2333 58888999998 4578899999999999998874
No 68
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=78.73 E-value=0.52 Score=36.64 Aligned_cols=95 Identities=15% Similarity=0.096 Sum_probs=44.2
Q ss_pred EEeCCCCcchhhhhcc-CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHhhhcC
Q 019738 123 VLLGAGMDTRAYRLNC-LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQLSG 200 (336)
Q Consensus 123 V~LGaGlDTr~~RL~~-~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L~~~g 200 (336)
+.+|||.=.....+.. .+..+++=+|. |.+++.-++.+.+... .+...+..+..+ ..+....
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~------------~~~~~~~~~~~~--~~~~~~~-- 64 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN------------DNFERLRFDVLD--LFDYDPP-- 64 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---------------EEEEE--SSS-----CCC---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC------------cceeEEEeecCC--hhhcccc--
Confidence 4678887766666644 14566666665 5555333333333311 223333333332 1111100
Q ss_pred CCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCce
Q 019738 201 YKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVH 238 (336)
Q Consensus 201 ~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs 238 (336)
+.--++++=.|+.|+ ++...+++.+.+...+|+
T Consensus 65 ---~~fD~V~~~~vl~~l--~~~~~~l~~~~~~L~pgG 97 (99)
T PF08242_consen 65 ---ESFDLVVASNVLHHL--EDIEAVLRNIYRLLKPGG 97 (99)
T ss_dssp ------SEEEEE-TTS----S-HHHHHHHHTTT-TSS-
T ss_pred ---cccceehhhhhHhhh--hhHHHHHHHHHHHcCCCC
Confidence 122367777999999 777799999998887765
No 69
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=77.86 E-value=28 Score=31.34 Aligned_cols=102 Identities=12% Similarity=0.061 Sum_probs=55.1
Q ss_pred ccEEEEeCCCCcchhhhhccCCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHhh
Q 019738 119 EAQVVLLGAGMDTRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQ 197 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L~ 197 (336)
...|+.+|||.-.....+... ...++-+|. ++.++.-++.+.... ....++.+|+.+. ... .
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~-------------~~~~~~~~~~~~~--~~~-~ 111 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESG-------------LKIDYRQTTAEEL--AAE-H 111 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcC-------------CceEEEecCHHHh--hhh-c
Confidence 457999999987766666542 345666665 454444443333221 1234455554421 110 1
Q ss_pred hcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEe
Q 019738 198 LSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLAD 244 (336)
Q Consensus 198 ~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D 244 (336)
. ..--++++-.++.++. ....+++.+.+...+|+.+++.+
T Consensus 112 ~-----~~fD~Ii~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 112 P-----GQFDVVTCMEMLEHVP--DPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred C-----CCccEEEEhhHhhccC--CHHHHHHHHHHHcCCCcEEEEEe
Confidence 1 1223445545555554 34567888888887777655543
No 70
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=77.14 E-value=16 Score=34.78 Aligned_cols=100 Identities=15% Similarity=0.272 Sum_probs=53.6
Q ss_pred cEEEEeCCC-Ccchhhhhcc--CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHH
Q 019738 120 AQVVLLGAG-MDTRAYRLNC--LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEK 195 (336)
Q Consensus 120 ~QVV~LGaG-lDTr~~RL~~--~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~ 195 (336)
..|+-+|+| |--....+.. ..++.+..+|. |+.++.-++++.+...+ +.+..++.+|..+.. ..
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L----------~~~m~f~~~d~~~~~--~d 189 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL----------SKRMSFITADVLDVT--YD 189 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-----------SSEEEEES-GGGG---GG
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc----------cCCeEEEecchhccc--cc
Confidence 589999999 6666777753 23555555554 77778888888844322 357888988876532 12
Q ss_pred hhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceE
Q 019738 196 LQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHT 239 (336)
Q Consensus 196 L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~ 239 (336)
+. .+| ++|+ ..+..|+.+.-.++|..+.+..++|..
T Consensus 190 l~--~~D----vV~l--AalVg~~~e~K~~Il~~l~~~m~~ga~ 225 (276)
T PF03059_consen 190 LK--EYD----VVFL--AALVGMDAEPKEEILEHLAKHMAPGAR 225 (276)
T ss_dssp ------S----EEEE---TT-S----SHHHHHHHHHHHS-TTSE
T ss_pred cc--cCC----EEEE--hhhcccccchHHHHHHHHHhhCCCCcE
Confidence 22 122 4444 456788999999999999999988764
No 71
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=77.12 E-value=18 Score=34.20 Aligned_cols=104 Identities=12% Similarity=0.020 Sum_probs=65.8
Q ss_pred ccEEEEeCCCCcchhhhhccCCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHhh
Q 019738 119 EAQVVLLGAGMDTRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQ 197 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L~ 197 (336)
...|+.||||-=....++....++++.=|.+ ++-.+.=++.+++.+- .++..++-+|.++.+-
T Consensus 63 G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl-----------~~~v~v~~~D~~~~~~----- 126 (273)
T PF02353_consen 63 GDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGL-----------EDRVEVRLQDYRDLPG----- 126 (273)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTS-----------SSTEEEEES-GGG--------
T ss_pred CCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEEeeccccCC-----
Confidence 3589999999999998887633667776666 4444444444444321 2456777777765221
Q ss_pred hcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEec
Q 019738 198 LSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADF 245 (336)
Q Consensus 198 ~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~ 245 (336)
.|| -+++=|++-.+.++.-..+++.+.+.+.+|+.+++-.+
T Consensus 127 --~fD-----~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 127 --KFD-----RIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp --S-S-----EEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred --CCC-----EEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEec
Confidence 344 25555778899999999999999999988876554333
No 72
>PRK07402 precorrin-6B methylase; Provisional
Probab=76.87 E-value=52 Score=28.93 Aligned_cols=99 Identities=13% Similarity=0.122 Sum_probs=54.9
Q ss_pred ccEEEEeCCCCcchhhhhcc-CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHh
Q 019738 119 EAQVVLLGAGMDTRAYRLNC-LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKL 196 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~-~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L 196 (336)
...|+.+|||.=.....+.. .++..++=||. |+.++.=++.++..+ ..+++++..|..+ .++.+
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~------------~~~v~~~~~d~~~--~~~~~ 106 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG------------VKNVEVIEGSAPE--CLAQL 106 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC------------CCCeEEEECchHH--HHhhC
Confidence 45899999987766554432 23345555555 666665554444331 1356777777643 12222
Q ss_pred hhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEE
Q 019738 197 QLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLA 243 (336)
Q Consensus 197 ~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~ 243 (336)
. ..+-.+...+. .....+++.+.+.+.+|+.+++.
T Consensus 107 ~------~~~d~v~~~~~------~~~~~~l~~~~~~LkpgG~li~~ 141 (196)
T PRK07402 107 A------PAPDRVCIEGG------RPIKEILQAVWQYLKPGGRLVAT 141 (196)
T ss_pred C------CCCCEEEEECC------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 1 11222333331 23567888888888777664444
No 73
>PRK06922 hypothetical protein; Provisional
Probab=76.34 E-value=26 Score=37.52 Aligned_cols=107 Identities=15% Similarity=0.184 Sum_probs=63.8
Q ss_pred ccEEEEeCCCCcchhhhhcc-CCCceEEEcchHH-HHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHh
Q 019738 119 EAQVVLLGAGMDTRAYRLNC-LKESDVFEVDFSQ-VLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKL 196 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~-~~~~~~~EvD~P~-vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L 196 (336)
...|+.+|||.=.....+.. .++..++-+|+.. +++.=++.+... ..++.++.+|..+.. +.
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~-------------g~~ie~I~gDa~dLp--~~- 482 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE-------------GRSWNVIKGDAINLS--SS- 482 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc-------------CCCeEEEEcchHhCc--cc-
Confidence 35899999998665555543 2567888888844 444333322221 125667777775421 11
Q ss_pred hhcCCCCCCcEEEEeeccc----cccC-------hHHHHHHHHHHHHhCCCceEEEEEec
Q 019738 197 QLSGYKPEKNTVWVLEGII----YYLL-------DIHAMQVLKLIADKCNLVHTVLLADF 245 (336)
Q Consensus 197 ~~~g~d~~~Ptl~i~EGvl----~YL~-------~~~~~~Ll~~l~~~~~~gs~~l~~D~ 245 (336)
+.+..--++++-.++ .|++ .+...++++.+.+.+.+|+.+++.|.
T Consensus 483 ----fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 483 ----FEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred ----cCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 112222233333332 3443 46788999999999988888888885
No 74
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=76.03 E-value=47 Score=30.85 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=67.7
Q ss_pred CccEEEEeCCCCcchhhhhcc-C--CCceEEEcchHHHHHHHHHHHHhhhcc--CC-----CCCC--C-ccCCC-cEEEE
Q 019738 118 REAQVVLLGAGMDTRAYRLNC-L--KESDVFEVDFSQVLQVKTALIQTAMEF--GD-----EQQH--P-RMTAK-SLTTV 183 (336)
Q Consensus 118 g~~QVV~LGaGlDTr~~RL~~-~--~~~~~~EvD~P~vi~~K~~~l~~~~~~--~~-----~~~~--~-~l~s~-~y~~i 183 (336)
..+.|+.||.|-=..+..+.. + ..+..+|+| |+|++.=++.+...... .| ..++ . .-..+ .|-.|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD-~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEID-PEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES--HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecC-hHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 356888888776555555543 2 478999999 78888888877654321 01 0000 0 00123 79999
Q ss_pred eccCCCCh----------hhHHhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCC
Q 019738 184 AADIREND----------WLEKLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNL 236 (336)
Q Consensus 184 ~~DL~d~~----------~~~~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~ 236 (336)
-.|+.++. +.+.+.+. +. .-=+++..+-..++.++....+.+.+.+.|+.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~-L~--~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~ 214 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRR-LK--PDGVLVLQAGSPFLHPELFKSILKTLRSVFPQ 214 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHH-EE--EEEEEEEEEEETTTTHHHHHHHHHHHHTTSSE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhh-cC--CCcEEEEEccCcccchHHHHHHHHHHHHhCCc
Confidence 99998842 22222221 11 11244555566778899999999999999874
No 75
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=75.20 E-value=21 Score=36.32 Aligned_cols=117 Identities=16% Similarity=0.115 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHhhcCC------CccEEEEeCCCCcchhhhhccC-----CCceEEEcch-HHHHHHHHHHHHhhhcc
Q 019738 99 IRTLWFDSQIEAALNSFNS------REAQVVLLGAGMDTRAYRLNCL-----KESDVFEVDF-SQVLQVKTALIQTAMEF 166 (336)
Q Consensus 99 ~Rt~~iD~~v~~fl~~~~~------g~~QVV~LGaGlDTr~~RL~~~-----~~~~~~EvD~-P~vi~~K~~~l~~~~~~ 166 (336)
+|....+++|.++|..... ..+.|+.+|||-=++..+.... ..+++|-|.- |..+...++++...+-
T Consensus 161 vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w- 239 (448)
T PF05185_consen 161 VKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW- 239 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC-
Confidence 4444555555555543210 1357999999999997554321 2466666654 4333333344344321
Q ss_pred CCCCCCCccCCCcEEEEeccCCCChhhHHhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCC
Q 019738 167 GDEQQHPRMTAKSLTTVAADIRENDWLEKLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNL 236 (336)
Q Consensus 167 ~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~ 236 (336)
.+++++|..|+++.+..+ +-=++|+|-+=.++..|-.-+.|....+.+.+
T Consensus 240 ----------~~~V~vi~~d~r~v~lpe----------kvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp 289 (448)
T PF05185_consen 240 ----------GDKVTVIHGDMREVELPE----------KVDIIVSELLGSFGDNELSPECLDAADRFLKP 289 (448)
T ss_dssp ----------TTTEEEEES-TTTSCHSS-----------EEEEEE---BTTBTTTSHHHHHHHGGGGEEE
T ss_pred ----------CCeEEEEeCcccCCCCCC----------ceeEEEEeccCCccccccCHHHHHHHHhhcCC
Confidence 257899999999754322 44588888887777777666777665554444
No 76
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=74.17 E-value=61 Score=28.47 Aligned_cols=113 Identities=12% Similarity=0.042 Sum_probs=61.4
Q ss_pred HHHHHHHHHHH-HHHHhhcCCCccEEEEeCCCCcchhhhhcc-CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCc
Q 019738 98 AIRTLWFDSQI-EAALNSFNSREAQVVLLGAGMDTRAYRLNC-LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPR 174 (336)
Q Consensus 98 ~~Rt~~iD~~v-~~fl~~~~~g~~QVV~LGaGlDTr~~RL~~-~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~ 174 (336)
.++..++|... ...+. ...|+.+|||.=.....+.. .++.+++-||. +++++.=++.+++.+
T Consensus 26 ~~~~~~~d~i~~~~~~~-----~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~---------- 90 (181)
T TIGR00138 26 IWERHILDSLKLLEYLD-----GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG---------- 90 (181)
T ss_pred HHHHHHHHHHHHHHhcC-----CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC----------
Confidence 45566666553 12222 35899999998776555432 23455666665 444444333344331
Q ss_pred cCCCcEEEEeccCCCChhhHHhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEE
Q 019738 175 MTAKSLTTVAADIRENDWLEKLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLA 243 (336)
Q Consensus 175 l~s~~y~~i~~DL~d~~~~~~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~ 243 (336)
-.++.++..|+.+.. .. ..--++++.+ +.+ ...+++.+.+...+|+.+++.
T Consensus 91 --~~~i~~i~~d~~~~~-----~~-----~~fD~I~s~~-~~~-----~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 91 --LNNVEIVNGRAEDFQ-----HE-----EQFDVITSRA-LAS-----LNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred --CCCeEEEecchhhcc-----cc-----CCccEEEehh-hhC-----HHHHHHHHHHhcCCCCEEEEE
Confidence 135788888886521 11 1223566666 222 345667777777666654443
No 77
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=73.86 E-value=38 Score=30.51 Aligned_cols=103 Identities=16% Similarity=0.036 Sum_probs=60.6
Q ss_pred cEEEEeCCCCcchhhhhcc--CCCceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHhh
Q 019738 120 AQVVLLGAGMDTRAYRLNC--LKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQ 197 (336)
Q Consensus 120 ~QVV~LGaGlDTr~~RL~~--~~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L~ 197 (336)
..|+.||||-=.....+.. .+..+++-||.-++ ... .+.+++.+|+.+...++.+.
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~--------~~~--------------~~v~~i~~D~~~~~~~~~i~ 110 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM--------DPI--------------VGVDFLQGDFRDELVLKALL 110 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc--------cCC--------------CCcEEEecCCCChHHHHHHH
Confidence 4799999998765544432 23457777776441 111 24678999999876665443
Q ss_pred hcCCCCCCcEEEEeeccccccChH---------HHHHHHHHHHHhCCCceEEEEEec
Q 019738 198 LSGYKPEKNTVWVLEGIIYYLLDI---------HAMQVLKLIADKCNLVHTVLLADF 245 (336)
Q Consensus 198 ~~g~d~~~Ptl~i~EGvl~YL~~~---------~~~~Ll~~l~~~~~~gs~~l~~D~ 245 (336)
+. +....--++++.....+.... ....+++.+.+.+.+|+.+++..+
T Consensus 111 ~~-~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 111 ER-VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred HH-hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 21 112233456666555444321 124678888888877776554433
No 78
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=72.99 E-value=80 Score=29.83 Aligned_cols=121 Identities=11% Similarity=0.010 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCCccEEEEeCCCCcchhhhhccCCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCC
Q 019738 95 VILAIRTLWFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHP 173 (336)
Q Consensus 95 ~~~~~Rt~~iD~~v~~fl~~~~~g~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~ 173 (336)
.+..--|+..-+.+.++.. ....|+.+|||.=.....+...+..+++-+|. |..++.=++.+....-
T Consensus 140 tG~h~tt~l~l~~l~~~~~----~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~-------- 207 (288)
T TIGR00406 140 TGTHPTTSLCLEWLEDLDL----KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQV-------- 207 (288)
T ss_pred CCCCHHHHHHHHHHHhhcC----CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCC--------
Confidence 3344556665555555433 23689999999976655554322234444444 3433333333332210
Q ss_pred ccCCCcEEEEeccCCCChhhHHhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEecc
Q 019738 174 RMTAKSLTTVAADIRENDWLEKLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFM 246 (336)
Q Consensus 174 ~l~s~~y~~i~~DL~d~~~~~~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~ 246 (336)
..+...+..|+.. ... ..--++++-.+ .+....++..+.+...+|+.+++..+.
T Consensus 208 ---~~~~~~~~~~~~~------~~~-----~~fDlVvan~~-----~~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 208 ---SDRLQVKLIYLEQ------PIE-----GKADVIVANIL-----AEVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred ---CcceEEEeccccc------ccC-----CCceEEEEecC-----HHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 1233334333211 111 12235555432 345667888888888887776655443
No 79
>PHA03412 putative methyltransferase; Provisional
Probab=72.72 E-value=3.5 Score=38.46 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=31.3
Q ss_pred HHHHHhhcCCCccEEEEeCCCCcchhhhhccC---CCceEEEcchHH
Q 019738 108 IEAALNSFNSREAQVVLLGAGMDTRAYRLNCL---KESDVFEVDFSQ 151 (336)
Q Consensus 108 v~~fl~~~~~g~~QVV~LGaGlDTr~~RL~~~---~~~~~~EvD~P~ 151 (336)
..+|+++. .-+.+-|||.||-+||=+|. +-+.+++|||-+
T Consensus 186 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (241)
T PHA03412 186 CKKFLDET----GLEMNPGCGIDTGYYLEDWKGVKPLCEVVCMEFNE 228 (241)
T ss_pred HHHHHHhc----CeeecCCCCccceeehhhccCCCccceEEEEeecC
Confidence 44666653 36899999999999999983 457899999843
No 80
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=72.69 E-value=32 Score=31.37 Aligned_cols=148 Identities=16% Similarity=0.116 Sum_probs=83.9
Q ss_pred ccEEEEeCCCCcchhhhhccCCCceEEEcchHHHHHHHHHHHHhhh---ccCCCCCCCccCCCcEEEEeccCCCChhhHH
Q 019738 119 EAQVVLLGAGMDTRAYRLNCLKESDVFEVDFSQVLQVKTALIQTAM---EFGDEQQHPRMTAKSLTTVAADIRENDWLEK 195 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~P~vi~~K~~~l~~~~---~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~ 195 (336)
...|+..|||--.-.-.|.. .+..++=||+-++- .++. .++.. ..............++.++.+|+.+.+- .
T Consensus 38 ~~rvLvPgCG~g~D~~~La~-~G~~VvGvDls~~A-i~~~-~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~--~ 112 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAE-QGHDVVGVDLSPTA-IEQA-FEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP--E 112 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHH-TTEEEEEEES-HHH-HHHH-HHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG--S
T ss_pred CCeEEEeCCCChHHHHHHHH-CCCeEEEEecCHHH-HHHH-HHHhccCCCcccccceeeecCCceEEEEcccccCCh--h
Confidence 45899999998888777776 46889999985552 2221 11111 0000000001234678899999987321 1
Q ss_pred hhhcCCCCCCcEEEEeec-cccccChHHHHHHHHHHHHhCCCceEEEEEeccCcccccccCCeeeecCCCcccccCCCCc
Q 019738 196 LQLSGYKPEKNTVWVLEG-IIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMNQPSTTLSSSIFHFSSDWPDRLLPTLGF 274 (336)
Q Consensus 196 L~~~g~d~~~Ptl~i~EG-vl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~~~~~~~~~a~f~~~~d~~e~~~~~~gF 274 (336)
.. .+.=+|.+. .++=|+++.-.+-.+.+.+.+++|..+++.-+..+. ....+-+|....++.++++. .+|
T Consensus 113 ~~-------g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~-~~~~GPPf~v~~~ev~~l~~-~~f 183 (218)
T PF05724_consen 113 DV-------GKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQ-GEMEGPPFSVTEEEVRELFG-PGF 183 (218)
T ss_dssp CH-------HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-C-SCSSSSS----HHHHHHHHT-TTE
T ss_pred hc-------CCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCC-cCCCCcCCCCCHHHHHHHhc-CCc
Confidence 11 123356655 778899999999999999999888773332222111 12336778776555566666 668
Q ss_pred ceeeec
Q 019738 275 SNVRLS 280 (336)
Q Consensus 275 ~~~m~~ 280 (336)
....+.
T Consensus 184 ~i~~l~ 189 (218)
T PF05724_consen 184 EIEELE 189 (218)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 776653
No 81
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=70.50 E-value=36 Score=30.06 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=57.5
Q ss_pred ccEEEEeCCCCcchhhhhcc-CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHh
Q 019738 119 EAQVVLLGAGMDTRAYRLNC-LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKL 196 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~-~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L 196 (336)
...|+.+|||-=.....+.. .++..++-||. +++++.-++.+...+ -.+++++.+|+.+ ..+.+
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~------------l~ni~~i~~d~~~--~~~~~ 82 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG------------LKNLHVLCGDANE--LLDKF 82 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC------------CCCEEEEccCHHH--HHHhh
Confidence 45899999999888776664 24667777776 555544344444331 1478888888864 22222
Q ss_pred hhcCCCCCCcEEEEeeccccccChHH------HHHHHHHHHHhCCCceEE
Q 019738 197 QLSGYKPEKNTVWVLEGIIYYLLDIH------AMQVLKLIADKCNLVHTV 240 (336)
Q Consensus 197 ~~~g~d~~~Ptl~i~EGvl~YL~~~~------~~~Ll~~l~~~~~~gs~~ 240 (336)
. +...-..+++-....+..... ...+++.+.+.+.+|+.+
T Consensus 83 ~----~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l 128 (194)
T TIGR00091 83 F----PDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVI 128 (194)
T ss_pred C----CCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEE
Confidence 1 111111222222222222111 246888888888776653
No 82
>PLN02823 spermine synthase
Probab=70.43 E-value=68 Score=31.38 Aligned_cols=119 Identities=11% Similarity=0.165 Sum_probs=68.2
Q ss_pred hhcCCCccEEEEeCCCCcchhhhhcc---CCCceEEEcchHHHHHHHHHHHHhhhc-c-CCC-----CCC---CccCCCc
Q 019738 113 NSFNSREAQVVLLGAGMDTRAYRLNC---LKESDVFEVDFSQVLQVKTALIQTAME-F-GDE-----QQH---PRMTAKS 179 (336)
Q Consensus 113 ~~~~~g~~QVV~LGaGlDTr~~RL~~---~~~~~~~EvD~P~vi~~K~~~l~~~~~-~-~~~-----~~~---~~l~s~~ 179 (336)
..|+ ..+.|+.||+|--..+..+.. ...+..+|+| |+|++.=++.+..... . .|. .++ ..-..++
T Consensus 99 ~~~~-~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD-~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~ 176 (336)
T PLN02823 99 LHHP-NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDID-QEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEK 176 (336)
T ss_pred hhCC-CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECC-HHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCC
Confidence 3454 456899999987766554432 2468899999 7777776666653211 0 010 000 0011357
Q ss_pred EEEEeccCCCCh------------hhH-HhhhcCCCCCCcEEEEeeccccc-c-ChHHHHHHHHHHHHhCCC
Q 019738 180 LTTVAADIREND------------WLE-KLQLSGYKPEKNTVWVLEGIIYY-L-LDIHAMQVLKLIADKCNL 236 (336)
Q Consensus 180 y~~i~~DL~d~~------------~~~-~L~~~g~d~~~Ptl~i~EGvl~Y-L-~~~~~~~Ll~~l~~~~~~ 236 (336)
|.+|=+|+.|+. +++ .+.+ -+.++. +++.++...+ + ..+....+++.+.+.|+.
T Consensus 177 yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~-~L~p~G--vlv~q~~s~~~~~~~~~~~~i~~tl~~vF~~ 245 (336)
T PLN02823 177 FDVIIGDLADPVEGGPCYQLYTKSFYERIVKP-KLNPGG--IFVTQAGPAGILTHKEVFSSIYNTLRQVFKY 245 (336)
T ss_pred ccEEEecCCCccccCcchhhccHHHHHHHHHH-hcCCCc--EEEEeccCcchhccHHHHHHHHHHHHHhCCC
Confidence 889999987641 222 2222 233332 4555554432 2 467788999999999976
No 83
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=69.64 E-value=88 Score=29.21 Aligned_cols=43 Identities=12% Similarity=0.359 Sum_probs=29.3
Q ss_pred ccEEEEeCCCCcchhhhhcc---CCCceEEEcchHHHHHHHHHHHHh
Q 019738 119 EAQVVLLGAGMDTRAYRLNC---LKESDVFEVDFSQVLQVKTALIQT 162 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~---~~~~~~~EvD~P~vi~~K~~~l~~ 162 (336)
.+.|+.||||-=.....+.. ...+..+|+| |++++.-++.+..
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid-~~vi~~a~~~~~~ 118 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDID-EKVIELSKKFLPS 118 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCC-HHHHHHHHHHhHh
Confidence 45899999998665544422 2468889998 6776766666644
No 84
>PRK04266 fibrillarin; Provisional
Probab=69.40 E-value=83 Score=28.81 Aligned_cols=99 Identities=16% Similarity=0.204 Sum_probs=54.6
Q ss_pred ccEEEEeCCCCcchhhhhccC-CCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHh
Q 019738 119 EAQVVLLGAGMDTRAYRLNCL-KESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKL 196 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~~-~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L 196 (336)
...|+.+|||.=.....+... +..+++=+|. |++++.=.+..++. .|...+.+|..++.....+
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--------------~nv~~i~~D~~~~~~~~~l 138 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--------------KNIIPILADARKPERYAHV 138 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--------------CCcEEEECCCCCcchhhhc
Confidence 358999999976655555431 1346787887 55544111112211 3567778888753211112
Q ss_pred hhcCCCCCCcEEEEeeccccccC-hHHHHHHHHHHHHhCCCceEEEE
Q 019738 197 QLSGYKPEKNTVWVLEGIIYYLL-DIHAMQVLKLIADKCNLVHTVLL 242 (336)
Q Consensus 197 ~~~g~d~~~Ptl~i~EGvl~YL~-~~~~~~Ll~~l~~~~~~gs~~l~ 242 (336)
.+ .+| .++ .+ ++ +.....+++.+.+.+.+|+.+++
T Consensus 139 ~~-~~D----~i~-~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 139 VE-KVD----VIY-QD-----VAQPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred cc-cCC----EEE-EC-----CCChhHHHHHHHHHHHhcCCCcEEEE
Confidence 11 122 222 22 32 44556678888888888877666
No 85
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=69.31 E-value=82 Score=27.94 Aligned_cols=99 Identities=17% Similarity=0.053 Sum_probs=59.6
Q ss_pred ccEEEEeCCCCcchhhhhcc-CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHh
Q 019738 119 EAQVVLLGAGMDTRAYRLNC-LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKL 196 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~-~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L 196 (336)
...|+.+|||.=-...-+.. .+..+++=+|. ++.++.-++.++..+. .+++++.+|..+...
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l------------~~i~~~~~d~~~~~~---- 109 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL------------KNVTVVHGRAEEFGQ---- 109 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC------------CCEEEEeccHhhCCC----
Confidence 35799999987654443321 24567788887 6666666665555421 347888888765211
Q ss_pred hhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEec
Q 019738 197 QLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADF 245 (336)
Q Consensus 197 ~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~ 245 (336)
. ...-++++.+. .....+++.+.+.+.+|+.+++++.
T Consensus 110 -~-----~~fDlV~~~~~------~~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 110 -E-----EKFDVVTSRAV------ASLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred -C-----CCccEEEEccc------cCHHHHHHHHHHhcCCCeEEEEEeC
Confidence 1 12224444432 2356788888888888877665543
No 86
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=67.60 E-value=95 Score=29.53 Aligned_cols=114 Identities=14% Similarity=0.067 Sum_probs=71.2
Q ss_pred CccEEEEeCCCCcchhhhhcc-----CCCceEEEcch-HHHHHHHHHHHHh-hhccCCCCCCCccCCCcEEEEeccCCCC
Q 019738 118 REAQVVLLGAGMDTRAYRLNC-----LKESDVFEVDF-SQVLQVKTALIQT-AMEFGDEQQHPRMTAKSLTTVAADIREN 190 (336)
Q Consensus 118 g~~QVV~LGaGlDTr~~RL~~-----~~~~~~~EvD~-P~vi~~K~~~l~~-~~~~~~~~~~~~l~s~~y~~i~~DL~d~ 190 (336)
|.+..|.||+|-.|..-+|-. ..-.+|+-||. ..+++.-.+.|.. .+. -...-+..|+.
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~------------l~v~~l~~~~~-- 143 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPG------------LEVNALCGDYE-- 143 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCC------------CeEeehhhhHH--
Confidence 578999999999998777653 12478888887 4555444444433 221 12334444543
Q ss_pred hhhHHhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEE-EEeccCcc
Q 019738 191 DWLEKLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVL-LADFMNQP 249 (336)
Q Consensus 191 ~~~~~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l-~~D~~~~~ 249 (336)
..|...- ...+..++..-..+--|+|++...++..+...+.+|.+++ ..|...+.
T Consensus 144 ---~~La~~~-~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~A 199 (321)
T COG4301 144 ---LALAELP-RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKPA 199 (321)
T ss_pred ---HHHhccc-CCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCHH
Confidence 2232211 1234444444445677999999999999999988876654 45776654
No 87
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=67.56 E-value=95 Score=28.92 Aligned_cols=108 Identities=13% Similarity=0.123 Sum_probs=77.2
Q ss_pred ccEEEEeCCCCcchhhhhccC-CCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHh
Q 019738 119 EAQVVLLGAGMDTRAYRLNCL-KESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKL 196 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~~-~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L 196 (336)
...|+.+|||-=-.+.++... +...++=+|+ +.+++.-++.+.+.+. .++.+|-+|..+..+
T Consensus 52 g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~------------~~i~fv~~dAe~LPf---- 115 (238)
T COG2226 52 GDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV------------QNVEFVVGDAENLPF---- 115 (238)
T ss_pred CCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCc------------cceEEEEechhhCCC----
Confidence 358999999999889888762 3678999998 8888777776665321 237888888876542
Q ss_pred hhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccCcc
Q 019738 197 QLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMNQP 249 (336)
Q Consensus 197 ~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~~~ 249 (336)
.++.|| ++.+--.|-.++ +.++.|+-+.+.+.+|..+++.|+..+.
T Consensus 116 ~D~sFD-----~vt~~fglrnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 116 PDNSFD-----AVTISFGLRNVT--DIDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred CCCccC-----EEEeeehhhcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 233343 333333445555 7788899999999888888899987764
No 88
>PHA03411 putative methyltransferase; Provisional
Probab=66.98 E-value=5.6 Score=37.95 Aligned_cols=39 Identities=26% Similarity=0.298 Sum_probs=30.4
Q ss_pred HHHHhhcCCCccEEEEeCCCCcchhhhhccC---CCceEEEcchHH
Q 019738 109 EAALNSFNSREAQVVLLGAGMDTRAYRLNCL---KESDVFEVDFSQ 151 (336)
Q Consensus 109 ~~fl~~~~~g~~QVV~LGaGlDTr~~RL~~~---~~~~~~EvD~P~ 151 (336)
+++++.+ .-+..-|||.||-+||=+|. +-+.+++|||-+
T Consensus 199 ~~~l~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (279)
T PHA03411 199 LKWSKQT----GLVTYAGCGIDTSIYRDEWHSTNVLTEVVEVRYYE 240 (279)
T ss_pred HHHHHhc----CcEecCCCCcccceehhhccCCCccceEEEEEecc
Confidence 4556654 36889999999999999983 457899999843
No 89
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=65.83 E-value=83 Score=30.04 Aligned_cols=118 Identities=10% Similarity=0.171 Sum_probs=76.0
Q ss_pred hcCCCccEEEEeCCCCcchhhhhcc---CCCceEEEcchHHHHHHHHHHHHhhhccC--C-----CCCC---CccCCCcE
Q 019738 114 SFNSREAQVVLLGAGMDTRAYRLNC---LKESDVFEVDFSQVLQVKTALIQTAMEFG--D-----EQQH---PRMTAKSL 180 (336)
Q Consensus 114 ~~~~g~~QVV~LGaGlDTr~~RL~~---~~~~~~~EvD~P~vi~~K~~~l~~~~~~~--~-----~~~~---~~l~s~~y 180 (336)
.|++ .+-|+.+|.|-=.....+.. ...+..+||| |+|++.-++.+....... | ..++ ..-.+..|
T Consensus 73 ah~~-pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID-~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~f 150 (282)
T COG0421 73 AHPN-PKRVLIIGGGDGGTLREVLKHLPVERITMVEID-PAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKF 150 (282)
T ss_pred hCCC-CCeEEEECCCccHHHHHHHhcCCcceEEEEEcC-HHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcC
Confidence 4653 36899999998877665543 3688999999 899999999987754211 1 0000 00012357
Q ss_pred EEEeccCCCCh----------hhHHhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCC
Q 019738 181 TTVAADIREND----------WLEKLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNL 236 (336)
Q Consensus 181 ~~i~~DL~d~~----------~~~~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~ 236 (336)
-.|=+|..|+. +.+.+.++ + +.+=++++.+-..++..+.....-+.+.+.|+.
T Consensus 151 DvIi~D~tdp~gp~~~Lft~eFy~~~~~~-L--~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~ 213 (282)
T COG0421 151 DVIIVDSTDPVGPAEALFTEEFYEGCRRA-L--KEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSI 213 (282)
T ss_pred CEEEEcCCCCCCcccccCCHHHHHHHHHh-c--CCCcEEEEecCCcccchHHHHHHHHHHHhhccc
Confidence 88888888871 12333222 2 234467777666888888888888888887754
No 90
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=65.01 E-value=27 Score=34.45 Aligned_cols=95 Identities=21% Similarity=0.256 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccEEEEeCCCCcchhhhhccCCCceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCC
Q 019738 98 AIRTLWFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNCLKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTA 177 (336)
Q Consensus 98 ~~Rt~~iD~~v~~fl~~~~~g~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s 177 (336)
++||-.....|.+--... ..+.||.+|||.--+.|=-...+..++|-|.-.++.+.-+++++.+. -+
T Consensus 159 YVRTgTY~~Ail~N~sDF--~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~-----------~~ 225 (517)
T KOG1500|consen 159 YVRTGTYQRAILENHSDF--QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNN-----------LA 225 (517)
T ss_pred HHhhhHHHHHHHhccccc--CCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCC-----------cc
Confidence 567766665554433333 24689999999988765544445678999999999999999998762 23
Q ss_pred CcEEEEeccCCCChhhHHhhhcCCCCCCcEEEEeeccc
Q 019738 178 KSLTTVAADIRENDWLEKLQLSGYKPEKNTVWVLEGII 215 (336)
Q Consensus 178 ~~y~~i~~DL~d~~~~~~L~~~g~d~~~Ptl~i~EGvl 215 (336)
++...|+.-+.+.+..+ +--++|+|-.=
T Consensus 226 ~rItVI~GKiEdieLPE----------k~DviISEPMG 253 (517)
T KOG1500|consen 226 DRITVIPGKIEDIELPE----------KVDVIISEPMG 253 (517)
T ss_pred ceEEEccCccccccCch----------hccEEEeccch
Confidence 67888887777654433 33467777543
No 91
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=64.27 E-value=67 Score=25.09 Aligned_cols=100 Identities=16% Similarity=0.196 Sum_probs=55.5
Q ss_pred ccEEEEeCCCCcchhhhhcc-CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHh
Q 019738 119 EAQVVLLGAGMDTRAYRLNC-LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKL 196 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~-~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L 196 (336)
...|+.+|||.=.....+.. .+..+++=+|. +..++.-++.+.... ..+..++..|..+. ...+
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~------------~~~~~~~~~~~~~~--~~~~ 85 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG------------VSNIVIVEGDAPEA--LEDS 85 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC------------CCceEEEecccccc--Chhh
Confidence 35899999998776666654 23467777776 455444344343321 13556676666531 1111
Q ss_pred hhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEe
Q 019738 197 QLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLAD 244 (336)
Q Consensus 197 ~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D 244 (336)
. ..--.+++. + ......++++.+.+...+|+. +++.
T Consensus 86 ~-----~~~D~v~~~-~-----~~~~~~~~l~~~~~~Lk~gG~-li~~ 121 (124)
T TIGR02469 86 L-----PEPDRVFIG-G-----SGGLLQEILEAIWRRLRPGGR-IVLN 121 (124)
T ss_pred c-----CCCCEEEEC-C-----cchhHHHHHHHHHHHcCCCCE-EEEE
Confidence 1 112233332 2 234556889999998887765 4443
No 92
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=63.53 E-value=97 Score=26.66 Aligned_cols=43 Identities=19% Similarity=0.197 Sum_probs=29.2
Q ss_pred ccEEEEeCCCCcchhhhhccCCCceEEEcch-HHHHHHHHHHHHh
Q 019738 119 EAQVVLLGAGMDTRAYRLNCLKESDVFEVDF-SQVLQVKTALIQT 162 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~-P~vi~~K~~~l~~ 162 (336)
...|+.||||.=.....+..... +++-+|. |+.++.=++.+..
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~ 63 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKL 63 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHH
Confidence 35799999999988777765322 5666665 7776655554443
No 93
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=63.24 E-value=49 Score=30.96 Aligned_cols=103 Identities=17% Similarity=0.116 Sum_probs=63.2
Q ss_pred ccEEEEeCCCCcchhhhhccC-CCceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHhh
Q 019738 119 EAQVVLLGAGMDTRAYRLNCL-KESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQ 197 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~~-~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L~ 197 (336)
...|+.+|||==-..-.+... ..|+.+|+.-+.+--.|....+.. +.+|-.. .-.+.|.
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~g-------------------v~i~y~~-~~~edl~ 119 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESG-------------------VNIDYRQ-ATVEDLA 119 (243)
T ss_pred CCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcc-------------------ccccchh-hhHHHHH
Confidence 468999999988777777652 456666666555554454433321 1123332 2235565
Q ss_pred hcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccC
Q 019738 198 LSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMN 247 (336)
Q Consensus 198 ~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~ 247 (336)
..| ..--+++.+|.+-.|=+|+. +++.++++..+|+. +++-.++
T Consensus 120 ~~~--~~FDvV~cmEVlEHv~dp~~---~~~~c~~lvkP~G~-lf~STin 163 (243)
T COG2227 120 SAG--GQFDVVTCMEVLEHVPDPES---FLRACAKLVKPGGI-LFLSTIN 163 (243)
T ss_pred hcC--CCccEEEEhhHHHccCCHHH---HHHHHHHHcCCCcE-EEEeccc
Confidence 543 23348888888877766655 88999999888765 4444443
No 94
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=62.32 E-value=84 Score=28.91 Aligned_cols=27 Identities=7% Similarity=0.047 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHhCCCceEEEEEecc
Q 019738 220 DIHAMQVLKLIADKCNLVHTVLLADFM 246 (336)
Q Consensus 220 ~~~~~~Ll~~l~~~~~~gs~~l~~D~~ 246 (336)
.+....++..+.+...+|+.+++.++.
T Consensus 189 ~~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 189 ANPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 455677888888888777776665543
No 95
>PRK04457 spermidine synthase; Provisional
Probab=61.51 E-value=92 Score=29.11 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=26.8
Q ss_pred ccEEEEeCCCCcchhhhhcc--C-CCceEEEcchHHHHHHHHHHHH
Q 019738 119 EAQVVLLGAGMDTRAYRLNC--L-KESDVFEVDFSQVLQVKTALIQ 161 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~--~-~~~~~~EvD~P~vi~~K~~~l~ 161 (336)
.+.|+.||||-=+....+.. + ..+..+|+| |++++.=++.+.
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEid-p~vi~~A~~~f~ 111 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEIN-PQVIAVARNHFE 111 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECC-HHHHHHHHHHcC
Confidence 45789999987776544422 2 356777777 777776555443
No 96
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=60.52 E-value=1.4e+02 Score=27.39 Aligned_cols=107 Identities=11% Similarity=0.104 Sum_probs=58.4
Q ss_pred CccEEEEeC--CCCcchhhhhccC--CCceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhh
Q 019738 118 REAQVVLLG--AGMDTRAYRLNCL--KESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWL 193 (336)
Q Consensus 118 g~~QVV~LG--aGlDTr~~RL~~~--~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~ 193 (336)
+.+.|+.+| +|+.+...-...+ ..+.-+|+| |+.++.-++.++..+- ..+++++-.|..+ .+
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d-~~~~~~A~~n~~~~gl-----------~~~i~~~~gda~~--~L 133 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDID-KEAYEVGLEFIKKAGV-----------DHKINFIQSDALS--AL 133 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECC-HHHHHHHHHHHHHcCC-----------CCcEEEEEccHHH--HH
Confidence 356899999 5666654322222 356666777 5666655555655431 2467888888763 45
Q ss_pred HHhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEec
Q 019738 194 EKLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADF 245 (336)
Q Consensus 194 ~~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~ 245 (336)
+.|...+-+ ...=++.+.+ ....-..++..+.+.+.+|+. +++|=
T Consensus 134 ~~l~~~~~~-~~fD~VfiDa-----~k~~y~~~~~~~~~ll~~GG~-ii~dn 178 (234)
T PLN02781 134 DQLLNNDPK-PEFDFAFVDA-----DKPNYVHFHEQLLKLVKVGGI-IAFDN 178 (234)
T ss_pred HHHHhCCCC-CCCCEEEECC-----CHHHHHHHHHHHHHhcCCCeE-EEEEc
Confidence 555332111 1111222222 134445677787788878764 66654
No 97
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=59.16 E-value=82 Score=29.01 Aligned_cols=58 Identities=19% Similarity=0.261 Sum_probs=37.9
Q ss_pred ccEEEEeCCCCcchhhhhcc-CCCceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCCh
Q 019738 119 EAQVVLLGAGMDTRAYRLNC-LKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIREND 191 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~-~~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~ 191 (336)
...|+.+|||.-...-.+.. ...+.-+|+|- ++++.-++.+.. ..++.++.+|+.+..
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~-~~~~~l~~~~~~--------------~~~v~v~~~D~~~~~ 88 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRAKKVTAIEIDP-RLAEILRKLLSL--------------YERLEVIEGDALKVD 88 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhCCcEEEEECCH-HHHHHHHHHhCc--------------CCcEEEEECchhcCC
Confidence 46899999999998877765 24577778885 343332222221 146788888987644
No 98
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=58.91 E-value=75 Score=28.93 Aligned_cols=128 Identities=14% Similarity=0.031 Sum_probs=81.9
Q ss_pred HHHHHHHHHhhcCCCccEEEEeCCCCcchhhhhcc-CCCceEEEcchHHHH-HHHHHHHHhhhccCCCCCCCccCCCcEE
Q 019738 104 FDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNC-LKESDVFEVDFSQVL-QVKTALIQTAMEFGDEQQHPRMTAKSLT 181 (336)
Q Consensus 104 iD~~v~~fl~~~~~g~~QVV~LGaGlDTr~~RL~~-~~~~~~~EvD~P~vi-~~K~~~l~~~~~~~~~~~~~~l~s~~y~ 181 (336)
|-+++++++.... ..|+.+|||.=.-+-.+.. .+.++|.--|..+.. .-=++.+...+. + .-..
T Consensus 14 Il~vL~~~l~~~~---~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~--~---------Nv~~ 79 (204)
T PF06080_consen 14 ILEVLKQYLPDSG---TRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGL--P---------NVRP 79 (204)
T ss_pred HHHHHHHHhCccC---ceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCC--c---------ccCC
Confidence 4456777776532 2599999998776554443 367899988875554 222333333321 0 0112
Q ss_pred EEeccCCCChhhHHhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEecc
Q 019738 182 TVAADIRENDWLEKLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFM 246 (336)
Q Consensus 182 ~i~~DL~d~~~~~~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~ 246 (336)
-+..|+.+..|.-... +++....--.+++==++..++.+.+..|++..++.+++|+.++++--.
T Consensus 80 P~~lDv~~~~w~~~~~-~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF 143 (204)
T PF06080_consen 80 PLALDVSAPPWPWELP-APLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPF 143 (204)
T ss_pred CeEeecCCCCCccccc-cccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCc
Confidence 3677888876653321 122334445777777889999999999999999999988876666433
No 99
>PTZ00146 fibrillarin; Provisional
Probab=58.03 E-value=1.3e+02 Score=28.89 Aligned_cols=100 Identities=18% Similarity=0.117 Sum_probs=54.9
Q ss_pred cEEEEeCCCCcchhhhhccC--CCceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHhh
Q 019738 120 AQVVLLGAGMDTRAYRLNCL--KESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQ 197 (336)
Q Consensus 120 ~QVV~LGaGlDTr~~RL~~~--~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L~ 197 (336)
..|+.||||.=+...-+... +.-.+|-||+.+-+. +.++..... ..|...|-.|.+++.....+.
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~--~dLl~~ak~-----------r~NI~~I~~Da~~p~~y~~~~ 200 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSG--RDLTNMAKK-----------RPNIVPIIEDARYPQKYRMLV 200 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHH--HHHHHHhhh-----------cCCCEEEECCccChhhhhccc
Confidence 47999999998876666542 234688888743211 122222111 035677888887643222111
Q ss_pred hcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEE
Q 019738 198 LSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLL 242 (336)
Q Consensus 198 ~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~ 242 (336)
. ..-++|+. . ..+++.+.++..+...+.++..+++
T Consensus 201 ~-----~vDvV~~D-v----a~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 201 P-----MVDVIFAD-V----AQPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred C-----CCCEEEEe-C----CCcchHHHHHHHHHHhccCCCEEEE
Confidence 1 11222221 1 1466777777777777877776555
No 100
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=57.33 E-value=1e+02 Score=28.63 Aligned_cols=92 Identities=16% Similarity=0.143 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHhhcCCCccEEEEeCCCCcchhhhhcc-CCCceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCC
Q 019738 100 RTLWFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNC-LKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAK 178 (336)
Q Consensus 100 Rt~~iD~~v~~fl~~~~~g~~QVV~LGaGlDTr~~RL~~-~~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~ 178 (336)
-...++++++. +.-. ....||.+|+|.=..-..|.. ...+..+|+|- ..++.=++.+.. .+
T Consensus 15 ~~~~~~~Iv~~-~~~~--~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~-~~~~~L~~~~~~--------------~~ 76 (262)
T PF00398_consen 15 DPNIADKIVDA-LDLS--EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDP-DLAKHLKERFAS--------------NP 76 (262)
T ss_dssp HHHHHHHHHHH-HTCG--TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSH-HHHHHHHHHCTT--------------CS
T ss_pred CHHHHHHHHHh-cCCC--CCCEEEEeCCCCccchhhHhcccCcceeecCcH-hHHHHHHHHhhh--------------cc
Confidence 33445555543 3322 357999999999888777754 35789999993 333222222221 25
Q ss_pred cEEEEeccCCCChhhHHhhhcCCCCCCcEEEEeeccccc
Q 019738 179 SLTTVAADIRENDWLEKLQLSGYKPEKNTVWVLEGIIYY 217 (336)
Q Consensus 179 ~y~~i~~DL~d~~~~~~L~~~g~d~~~Ptl~i~EGvl~Y 217 (336)
++.+|..|+.+.++.+.+ .+.+.++++- +.|
T Consensus 77 ~~~vi~~D~l~~~~~~~~------~~~~~~vv~N--lPy 107 (262)
T PF00398_consen 77 NVEVINGDFLKWDLYDLL------KNQPLLVVGN--LPY 107 (262)
T ss_dssp SEEEEES-TTTSCGGGHC------SSSEEEEEEE--ETG
T ss_pred cceeeecchhccccHHhh------cCCceEEEEE--ecc
Confidence 899999999976655544 3466666664 455
No 101
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=57.08 E-value=1.6e+02 Score=27.42 Aligned_cols=108 Identities=15% Similarity=0.120 Sum_probs=60.7
Q ss_pred CccEEEEeC--CCCcchhhhhccCC--CceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhh
Q 019738 118 REAQVVLLG--AGMDTRAYRLNCLK--ESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWL 193 (336)
Q Consensus 118 g~~QVV~LG--aGlDTr~~RL~~~~--~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~ 193 (336)
+.+.|+.+| +|+.|..+=...++ .+.-+|.| |+..+.-++.+++.+- +++.+++..|.. +.+
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~-~~~~~~Ar~~~~~ag~-----------~~~I~~~~G~a~--e~L 144 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDIN-RENYELGLPVIQKAGV-----------AHKIDFREGPAL--PVL 144 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCC-HHHHHHHHHHHHHCCC-----------CCceEEEeccHH--HHH
Confidence 356899999 77777755433333 45555665 7777887888877642 246777777754 345
Q ss_pred HHhhhcC-CCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEecc
Q 019738 194 EKLQLSG-YKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFM 246 (336)
Q Consensus 194 ~~L~~~g-~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~ 246 (336)
..|...| ....--.+||= =..+.-...+..+.....+|+ ++++|=+
T Consensus 145 ~~l~~~~~~~~~fD~iFiD------adK~~Y~~y~~~~l~ll~~GG-viv~DNv 191 (247)
T PLN02589 145 DQMIEDGKYHGTFDFIFVD------ADKDNYINYHKRLIDLVKVGG-VIGYDNT 191 (247)
T ss_pred HHHHhccccCCcccEEEec------CCHHHhHHHHHHHHHhcCCCe-EEEEcCC
Confidence 5554322 00111122221 123444456666667777765 5777743
No 102
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=56.64 E-value=78 Score=27.54 Aligned_cols=101 Identities=13% Similarity=0.075 Sum_probs=55.0
Q ss_pred ccEEEEeCCCCcchhhhhcc--CCCceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHh
Q 019738 119 EAQVVLLGAGMDTRAYRLNC--LKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKL 196 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~--~~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L 196 (336)
...|+.+|||-=....-+.. .+..+++-+|.-+.+ .. .+..++..|+.+.+..+.+
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~~--------------~~i~~~~~d~~~~~~~~~l 90 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------PI--------------ENVDFIRGDFTDEEVLNKI 90 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------cC--------------CCceEEEeeCCChhHHHHH
Confidence 45899999998765433321 133456666653322 11 2456777888875544443
Q ss_pred hhcCCCCCCcEEEEeeccccc-----cC----hHHHHHHHHHHHHhCCCceEEEE
Q 019738 197 QLSGYKPEKNTVWVLEGIIYY-----LL----DIHAMQVLKLIADKCNLVHTVLL 242 (336)
Q Consensus 197 ~~~g~d~~~Ptl~i~EGvl~Y-----L~----~~~~~~Ll~~l~~~~~~gs~~l~ 242 (336)
... +..+..-++++.+...| +. .+....+++.+.+.+.+|+.+++
T Consensus 91 ~~~-~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi 144 (188)
T TIGR00438 91 RER-VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVV 144 (188)
T ss_pred HHH-hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 321 12233446666554221 11 12346788888888877665443
No 103
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=54.79 E-value=1.5e+02 Score=26.05 Aligned_cols=102 Identities=13% Similarity=0.114 Sum_probs=51.7
Q ss_pred ccEEEEeCCCCc--chhhhhccCCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHH
Q 019738 119 EAQVVLLGAGMD--TRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEK 195 (336)
Q Consensus 119 ~~QVV~LGaGlD--Tr~~RL~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~ 195 (336)
...|+.+|||-= +...-....+..+++=+|. |+.++.=++.++..+. .++..++..|..+ .+..
T Consensus 41 ~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~-----------~~~v~~~~~d~~~--~l~~ 107 (198)
T PRK00377 41 GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV-----------LNNIVLIKGEAPE--ILFT 107 (198)
T ss_pred cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC-----------CCCeEEEEechhh--hHhh
Confidence 458999999763 3322111123345666665 5555543333333210 1356667667643 2222
Q ss_pred hhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEec
Q 019738 196 LQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADF 245 (336)
Q Consensus 196 L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~ 245 (336)
+ + ..+-++++.+ .......+++.+.+...+|+.+ +++.
T Consensus 108 ~-----~-~~~D~V~~~~-----~~~~~~~~l~~~~~~LkpgG~l-v~~~ 145 (198)
T PRK00377 108 I-----N-EKFDRIFIGG-----GSEKLKEIISASWEIIKKGGRI-VIDA 145 (198)
T ss_pred c-----C-CCCCEEEECC-----CcccHHHHHHHHHHHcCCCcEE-EEEe
Confidence 2 1 1233344433 2234567888888888776654 3444
No 104
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=53.92 E-value=39 Score=29.45 Aligned_cols=108 Identities=18% Similarity=0.183 Sum_probs=49.8
Q ss_pred ccEEEEeCCCCcchhhhhccC-CCceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHhh
Q 019738 119 EAQVVLLGAGMDTRAYRLNCL-KESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQ 197 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~~-~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L~ 197 (336)
.+.|+.||||.=--..-+... +..+++=-|+++++..=+.-++.+... ...+......|-.+..-.+.+
T Consensus 46 ~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~---------~~~~v~v~~L~Wg~~~~~~~~- 115 (173)
T PF10294_consen 46 GKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSL---------LDGRVSVRPLDWGDELDSDLL- 115 (173)
T ss_dssp TSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT-----------------EEEE--TTS-HHHHHH-
T ss_pred CceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhcccc---------ccccccCcEEEecCccccccc-
Confidence 469999999854333222221 345677778777766544444443210 113455555554432111122
Q ss_pred hcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEE
Q 019738 198 LSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLL 242 (336)
Q Consensus 198 ~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~ 242 (336)
++..+-++|+==|++. ++....|++.+...+.+++.+++
T Consensus 116 ----~~~~~D~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~ 154 (173)
T PF10294_consen 116 ----EPHSFDVILASDVLYD--EELFEPLVRTLKRLLKPNGKVLL 154 (173)
T ss_dssp ----S-SSBSEEEEES--S---GGGHHHHHHHHHHHBTT-TTEEE
T ss_pred ----ccccCCEEEEecccch--HHHHHHHHHHHHHHhCCCCEEEE
Confidence 2223334444444342 68889999999998876554333
No 105
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=52.91 E-value=1.9e+02 Score=26.66 Aligned_cols=139 Identities=10% Similarity=0.090 Sum_probs=76.6
Q ss_pred cEEEEeCCCCcchhhhhccCCCceEEEcchHHHHHHHHHHHHhhhc---cCCCCCCCccCCCcEEEEeccCCCChhhHHh
Q 019738 120 AQVVLLGAGMDTRAYRLNCLKESDVFEVDFSQVLQVKTALIQTAME---FGDEQQHPRMTAKSLTTVAADIRENDWLEKL 196 (336)
Q Consensus 120 ~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~P~vi~~K~~~l~~~~~---~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L 196 (336)
..|+..|||----.-.|.. .+..++=||+-+.--.+- .++.+. .............+.+++.+|+.+.++....
T Consensus 45 ~rvLvPgCGkg~D~~~LA~-~G~~V~GvDlS~~Ai~~~--~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~ 121 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLS-KGVKVIGIELSEKAVLSF--FSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN 121 (226)
T ss_pred CeEEEeCCCChHHHHHHHh-CCCcEEEEecCHHHHHHH--HHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence 5788888887666666665 467788888844422111 111110 0000000112235678899999875432211
Q ss_pred hhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccCcccccccCCeeeecCCCccccc
Q 019738 197 QLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMNQPSTTLSSSIFHFSSDWPDRLL 269 (336)
Q Consensus 197 ~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~~~~~~~~~a~f~~~~d~~e~~~ 269 (336)
. ..|| +|.--+.++=|+++.-.+-.+.+.+.+++|+.+++.-+... ...++-+|....++.++++
T Consensus 122 ~-~~fD-----~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~--~~~~GPPf~v~~~e~~~lf 186 (226)
T PRK13256 122 L-PVFD-----IWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHD--KKSQTPPYSVTQAELIKNF 186 (226)
T ss_pred c-CCcC-----eeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecC--CCCCCCCCcCCHHHHHHhc
Confidence 1 1233 24444777889999999999999998887766554433111 1124556655433333333
No 106
>PRK03612 spermidine synthase; Provisional
Probab=52.38 E-value=1.8e+02 Score=30.17 Aligned_cols=44 Identities=14% Similarity=0.252 Sum_probs=27.7
Q ss_pred hhcCCCccEEEEeCCCCcchhhhhc-cC--CCceEEEcchHHHHHHHHH
Q 019738 113 NSFNSREAQVVLLGAGMDTRAYRLN-CL--KESDVFEVDFSQVLQVKTA 158 (336)
Q Consensus 113 ~~~~~g~~QVV~LGaGlDTr~~RL~-~~--~~~~~~EvD~P~vi~~K~~ 158 (336)
..|+ ..+.|+.+|||-=.....+. .+ ..+..+|+| |++++.=++
T Consensus 293 ~~~~-~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid-~~vi~~ar~ 339 (521)
T PRK03612 293 AASA-RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLD-PAMTELART 339 (521)
T ss_pred hhCC-CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECC-HHHHHHHHh
Confidence 3444 35679999998655443332 22 468888998 566665554
No 107
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=51.69 E-value=88 Score=26.74 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=36.8
Q ss_pred ccEEEEeCCCCcchhhhhccC-CCceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCC
Q 019738 119 EAQVVLLGAGMDTRAYRLNCL-KESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIREN 190 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~~-~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~ 190 (336)
...|+.+|||.=.....+... ..+.-+|+| +..++.-++.+... .+..++..|+.+.
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~-~~~~~~~~~~~~~~--------------~~v~ii~~D~~~~ 71 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLERAARVTAIEID-PRLAPRLREKFAAA--------------DNLTVIHGDALKF 71 (169)
T ss_pred cCEEEEECCCccHHHHHHHhcCCeEEEEECC-HHHHHHHHHHhccC--------------CCEEEEECchhcC
Confidence 458999999987776666542 356667777 44544444433221 3678888888764
No 108
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=48.30 E-value=29 Score=32.64 Aligned_cols=63 Identities=16% Similarity=0.226 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhhcCCCccEEEEeCCCCcchhhh-hccCCCceEEEcch-HHHHHHHHHHHHhh
Q 019738 100 RTLWFDSQIEAALNSFNSREAQVVLLGAGMDTRAYR-LNCLKESDVFEVDF-SQVLQVKTALIQTA 163 (336)
Q Consensus 100 Rt~~iD~~v~~fl~~~~~g~~QVV~LGaGlDTr~~R-L~~~~~~~~~EvD~-P~vi~~K~~~l~~~ 163 (336)
|.-.+|++...-....+ ....|+.|||||=|.++= +...++..|+-+|. ...++.=.+.+...
T Consensus 88 Rl~~Ld~fY~~if~~~~-~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l 152 (251)
T PF07091_consen 88 RLPNLDEFYDEIFGRIP-PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL 152 (251)
T ss_dssp CGGGHHHHHHHHCCCS----SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHhcCC-CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh
Confidence 33445555533333222 357899999999999753 33345678877776 77777777776654
No 109
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=48.03 E-value=2.1e+02 Score=25.68 Aligned_cols=59 Identities=24% Similarity=0.212 Sum_probs=35.6
Q ss_pred ccEEEEeCCCCcchhhhhcc-CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCC
Q 019738 119 EAQVVLLGAGMDTRAYRLNC-LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRE 189 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~-~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d 189 (336)
...|+.+|||-=.....+.. .++..++-+|. +..++.=++.+...+ ..+..++..|+.+
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~------------~~~~~~~~~d~~~ 148 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLG------------LDNVTFLQSDWFE 148 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC------------CCeEEEEECchhc
Confidence 34799999998887666654 23456666664 555554444443321 1256777777754
No 110
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=43.57 E-value=1.4e+02 Score=25.69 Aligned_cols=108 Identities=11% Similarity=0.016 Sum_probs=59.4
Q ss_pred HHHHHhhcCCCccEEEEeCCCCcchhhhhcc-CCC--ceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEe
Q 019738 108 IEAALNSFNSREAQVVLLGAGMDTRAYRLNC-LKE--SDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVA 184 (336)
Q Consensus 108 v~~fl~~~~~g~~QVV~LGaGlDTr~~RL~~-~~~--~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~ 184 (336)
+.+++..++ ...|+.||||.=....-+.. .+. +..+|++...+-..|+ -++.... ++.+++.
T Consensus 23 L~~~l~~~~--~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~-n~~~n~~------------~~v~~~~ 87 (170)
T PF05175_consen 23 LLDNLPKHK--GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKR-NAERNGL------------ENVEVVQ 87 (170)
T ss_dssp HHHHHHHHT--TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHH-HHHHTTC------------TTEEEEE
T ss_pred HHHHHhhcc--CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH-HHHhcCc------------ccccccc
Confidence 445555442 56899999999888777764 234 7777887554444443 3343321 2378888
Q ss_pred ccCCCChhhHHhhhcCCC---CCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEE
Q 019738 185 ADIRENDWLEKLQLSGYK---PEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTV 240 (336)
Q Consensus 185 ~DL~d~~~~~~L~~~g~d---~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~ 240 (336)
+|+.+. +....|| .+-| +..|- .-..+-.+.+++...+.+.+|+.+
T Consensus 88 ~d~~~~-----~~~~~fD~Iv~NPP---~~~~~--~~~~~~~~~~i~~a~~~Lk~~G~l 136 (170)
T PF05175_consen 88 SDLFEA-----LPDGKFDLIVSNPP---FHAGG--DDGLDLLRDFIEQARRYLKPGGRL 136 (170)
T ss_dssp SSTTTT-----CCTTCEEEEEE------SBTTS--HCHHHHHHHHHHHHHHHEEEEEEE
T ss_pred cccccc-----ccccceeEEEEccc---hhccc--ccchhhHHHHHHHHHHhccCCCEE
Confidence 888652 1111122 1222 00111 111235788888888888776653
No 111
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=42.65 E-value=2.4e+02 Score=24.96 Aligned_cols=69 Identities=10% Similarity=0.083 Sum_probs=37.3
Q ss_pred HHHHHhhcCCCccEEEEeCCCCcchhhhhcc--CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEe
Q 019738 108 IEAALNSFNSREAQVVLLGAGMDTRAYRLNC--LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVA 184 (336)
Q Consensus 108 v~~fl~~~~~g~~QVV~LGaGlDTr~~RL~~--~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~ 184 (336)
+.+.+.-.+ ...|+.+|||.=.....+.. ....+++-+|. |+.++.=++.+...+. ..+++++.
T Consensus 64 ~~~~l~~~~--~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~-----------~~~v~~~~ 130 (205)
T PRK13944 64 MCELIEPRP--GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY-----------WGVVEVYH 130 (205)
T ss_pred HHHhcCCCC--CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----------CCcEEEEE
Confidence 334444332 35899999986544433332 12235555554 6665544444443321 13578888
Q ss_pred ccCCC
Q 019738 185 ADIRE 189 (336)
Q Consensus 185 ~DL~d 189 (336)
.|..+
T Consensus 131 ~d~~~ 135 (205)
T PRK13944 131 GDGKR 135 (205)
T ss_pred CCccc
Confidence 88865
No 112
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=41.99 E-value=27 Score=33.37 Aligned_cols=35 Identities=6% Similarity=0.082 Sum_probs=30.6
Q ss_pred EEEEeeccccccChHHHHHHHHHHHHhCCCceEEE
Q 019738 207 TVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVL 241 (336)
Q Consensus 207 tl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l 241 (336)
=++++.-|++|++++.-.++++.+.+...+|+.++
T Consensus 225 D~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~ 259 (287)
T PRK10611 225 DAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLF 259 (287)
T ss_pred ceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 37888889999999999999999999998877533
No 113
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=40.84 E-value=3.2e+02 Score=25.78 Aligned_cols=74 Identities=18% Similarity=0.163 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhcCCCccEEEEeCCCCcchhhhhcc-CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcE
Q 019738 103 WFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNC-LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSL 180 (336)
Q Consensus 103 ~iD~~v~~fl~~~~~g~~QVV~LGaGlDTr~~RL~~-~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y 180 (336)
.++..+..++... +...|+.+|||.=.....+.. .++.+++-+|. |+.++.=++-+...+- ..++
T Consensus 108 lv~~~l~~~~~~~--~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~-----------~~~i 174 (284)
T TIGR03533 108 LIEDGFAPWLEPE--PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL-----------EDRV 174 (284)
T ss_pred HHHHHHHHHhccC--CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcE
Confidence 3444444444321 245799999999887766654 23456666665 5665554444443321 1356
Q ss_pred EEEeccCCC
Q 019738 181 TTVAADIRE 189 (336)
Q Consensus 181 ~~i~~DL~d 189 (336)
.++..|+.+
T Consensus 175 ~~~~~D~~~ 183 (284)
T TIGR03533 175 TLIQSDLFA 183 (284)
T ss_pred EEEECchhh
Confidence 778888753
No 114
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=40.74 E-value=30 Score=31.14 Aligned_cols=55 Identities=7% Similarity=0.004 Sum_probs=34.9
Q ss_pred CcEEEEeccCCCChhhHHhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEE
Q 019738 178 KSLTTVAADIRENDWLEKLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVL 241 (336)
Q Consensus 178 ~~y~~i~~DL~d~~~~~~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l 241 (336)
+++++-..||.+. .. ....=-++++=-||+|++++...++++.+.+.+.+|+.++
T Consensus 118 ~~V~F~~~NL~~~-~~--------~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~ 172 (196)
T PF01739_consen 118 KMVRFRRHNLLDP-DP--------PFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLF 172 (196)
T ss_dssp TTEEEEE--TT-S---------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEE
T ss_pred CceEEEecccCCC-Cc--------ccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEE
Confidence 3456666666651 10 0122358889999999999999999999999998877533
No 115
>PRK01581 speE spermidine synthase; Validated
Probab=39.86 E-value=4e+02 Score=26.63 Aligned_cols=52 Identities=12% Similarity=0.257 Sum_probs=31.3
Q ss_pred HHHHHHHHhhcCCCccEEEEeCCCCcchhhhhc-cC--CCceEEEcchHHHHHHHHH
Q 019738 105 DSQIEAALNSFNSREAQVVLLGAGMDTRAYRLN-CL--KESDVFEVDFSQVLQVKTA 158 (336)
Q Consensus 105 D~~v~~fl~~~~~g~~QVV~LGaGlDTr~~RL~-~~--~~~~~~EvD~P~vi~~K~~ 158 (336)
+-++.-.+..++ ..+.|+.||||-=.....+. .+ ..+..+|+| |+|++.=++
T Consensus 138 E~Lvhp~m~~h~-~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEID-peVIelAr~ 192 (374)
T PRK01581 138 EALVHPIMSKVI-DPKRVLILGGGDGLALREVLKYETVLHVDLVDLD-GSMINMARN 192 (374)
T ss_pred HHHHHHHHHhCC-CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCC-HHHHHHHHh
Confidence 333444445555 45789999998433222222 22 468888999 777776554
No 116
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=39.75 E-value=2.3e+02 Score=25.98 Aligned_cols=123 Identities=16% Similarity=0.104 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC--ccEEEEeCCCCcchhhhhccCCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCC
Q 019738 97 LAIRTLWFDSQIEAALNSFNSR--EAQVVLLGAGMDTRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHP 173 (336)
Q Consensus 97 ~~~Rt~~iD~~v~~fl~~~~~g--~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~ 173 (336)
++.+...=-..+.+++..||.- .+.|+.+|+|.+--+-=-...+-..|+..|. |..++.-+--.+.+
T Consensus 56 fwa~~WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~an---------- 125 (218)
T COG3897 56 FWAFAWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAAN---------- 125 (218)
T ss_pred HHHHHHhhhHHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhc----------
Confidence 4555555556677888887632 3589999999886532211112234455554 44433222111111
Q ss_pred ccCCCcEEEEeccCCCChhhHHhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEecc
Q 019738 174 RMTAKSLTTVAADIRENDWLEKLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFM 246 (336)
Q Consensus 174 ~l~s~~y~~i~~DL~d~~~~~~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~ 246 (336)
.-+..++..|+-. ++.. .=+|.-|=+.| +....++|+.|+...-..|..++++|--
T Consensus 126 ---gv~i~~~~~d~~g------------~~~~-~Dl~LagDlfy-~~~~a~~l~~~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 126 ---GVSILFTHADLIG------------SPPA-FDLLLAGDLFY-NHTEADRLIPWKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred ---cceeEEeeccccC------------CCcc-eeEEEeeceec-CchHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 1245556655542 1111 11233333334 6777889999998888888877777653
No 117
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=39.48 E-value=3.1e+02 Score=25.31 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=22.7
Q ss_pred ccEEEEeCCCCcchhhhhcc-CC--CceEEEcchHHHHHH
Q 019738 119 EAQVVLLGAGMDTRAYRLNC-LK--ESDVFEVDFSQVLQV 155 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~-~~--~~~~~EvD~P~vi~~ 155 (336)
...|+.||||.=+...-+.. .+ .+.-+|+| |+.++.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis-~~al~~ 125 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADID-PAAVRC 125 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECC-HHHHHH
Confidence 34799999999877766543 12 35555665 444443
No 118
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=38.72 E-value=98 Score=31.08 Aligned_cols=126 Identities=17% Similarity=0.220 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhhcCCCccEEEEeCCCCcchhhhh-cc-C--CCceEEEcchHHHHHHHH--HHHHhhhccC---C----
Q 019738 102 LWFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRL-NC-L--KESDVFEVDFSQVLQVKT--ALIQTAMEFG---D---- 168 (336)
Q Consensus 102 ~~iD~~v~~fl~~~~~g~~QVV~LGaGlDTr~~RL-~~-~--~~~~~~EvD~P~vi~~K~--~~l~~~~~~~---~---- 168 (336)
|+-+.+|--.+++.+ |...|+.||+| |-.+-|= .. | ..++-+|+| |.|++.-+ ..+++..... |
T Consensus 274 RYhEsLV~pals~~~-~a~~vLvlGGG-DGLAlRellkyP~~~qI~lVdLD-P~miela~~~~vlr~~N~~sf~dpRv~V 350 (508)
T COG4262 274 RYHESLVYPALSSVR-GARSVLVLGGG-DGLALRELLKYPQVEQITLVDLD-PRMIELASHATVLRALNQGSFSDPRVTV 350 (508)
T ss_pred hhhheeeeccccccc-ccceEEEEcCC-chHHHHHHHhCCCcceEEEEecC-HHHHHHhhhhhHhhhhccCCccCCeeEE
Confidence 444444444444333 66789999988 6666553 22 3 356777777 88888766 5665543211 1
Q ss_pred --CCCC--CccCCCcEEEEeccCCCChhh--------H--HhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHH
Q 019738 169 --EQQH--PRMTAKSLTTVAADIRENDWL--------E--KLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIAD 232 (336)
Q Consensus 169 --~~~~--~~l~s~~y~~i~~DL~d~~~~--------~--~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~ 232 (336)
+... ..-..+.|..+-+||.|++-. + .|...-+ ..--++|.+.-..|.+|+..-.+++.+.+
T Consensus 351 v~dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l--~e~Gl~VvQags~y~tp~vfw~i~aTik~ 426 (508)
T COG4262 351 VNDDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHL--AETGLMVVQAGSPYFTPRVFWRIDATIKS 426 (508)
T ss_pred EeccHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhc--CcCceEEEecCCCccCCceeeeehhHHHh
Confidence 0000 000124566777777776411 1 1222112 12236777777888888887777777765
No 119
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=37.84 E-value=4.2e+02 Score=26.36 Aligned_cols=101 Identities=11% Similarity=0.027 Sum_probs=55.0
Q ss_pred cEEEEeCCCCcchhhhhcc--C-CCceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHh
Q 019738 120 AQVVLLGAGMDTRAYRLNC--L-KESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKL 196 (336)
Q Consensus 120 ~QVV~LGaGlDTr~~RL~~--~-~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L 196 (336)
..|+.||||.=.....+.. + ..+..+|++...+-..|+. ++..... ...+..++..|..+. +
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N-~~~n~~~---------~~~~v~~~~~D~l~~-----~ 294 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLN-VETNMPE---------ALDRCEFMINNALSG-----V 294 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCcc---------cCceEEEEEcccccc-----C
Confidence 4899999999887766643 2 2466666665444444433 3332110 002456666665321 1
Q ss_pred hhcCCCCCCcEEEEeecc---ccccChHHHHHHHHHHHHhCCCceEE
Q 019738 197 QLSGYKPEKNTVWVLEGI---IYYLLDIHAMQVLKLIADKCNLVHTV 240 (336)
Q Consensus 197 ~~~g~d~~~Ptl~i~EGv---l~YL~~~~~~~Ll~~l~~~~~~gs~~ 240 (336)
....|| ++++--- ..+++.+.+.++|+.+.+.+.+|+.+
T Consensus 295 ~~~~fD-----lIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L 336 (378)
T PRK15001 295 EPFRFN-----AVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGEL 336 (378)
T ss_pred CCCCEE-----EEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEE
Confidence 111122 3333211 13456677889999999888776653
No 120
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=37.24 E-value=2.3e+02 Score=26.73 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=40.3
Q ss_pred ccEEEEeCCCCcchhhhhcc-CCCceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhh
Q 019738 119 EAQVVLLGAGMDTRAYRLNC-LKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWL 193 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~-~~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~ 193 (336)
...||.+|+|.=..=-.|.. ...+..||+|.-=+-..++. +.. .++...|-.|....++.
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~-~~~--------------~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKER-FAP--------------YDNLTVINGDALKFDFP 91 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHh-ccc--------------ccceEEEeCchhcCcch
Confidence 46899999999988777765 35689999994322222222 211 25788888888776554
No 121
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=37.22 E-value=2.4e+02 Score=28.35 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=35.5
Q ss_pred ccEEEEeCCCCcchhhhhcc-CCCceEEEcc--hHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCC
Q 019738 119 EAQVVLLGAGMDTRAYRLNC-LKESDVFEVD--FSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRE 189 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~-~~~~~~~EvD--~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d 189 (336)
...+|.+|||.=.....+.. .++..++-|| .+.+....+++ ...+ -.|+.++.+|...
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka-~~~g------------L~NV~~i~~DA~~ 183 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQI-ELLN------------LKNLLIINYDARL 183 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHH-HHcC------------CCcEEEEECCHHH
Confidence 34899999998777666654 2345555555 45554444443 3221 1478889888763
No 122
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=37.15 E-value=90 Score=28.94 Aligned_cols=58 Identities=17% Similarity=0.136 Sum_probs=37.5
Q ss_pred ccEEEEeCCCCcchhhhhccC-CCceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCCh
Q 019738 119 EAQVVLLGAGMDTRAYRLNCL-KESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIREND 191 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~~-~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~ 191 (336)
...|+.+|||.=+....+... ..+.-+|+|-. +++.=++.+... .++.++..|+.+.+
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~-~~~~l~~~~~~~--------------~~v~ii~~D~~~~~ 88 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRAKKVYAIELDPR-LAEFLRDDEIAA--------------GNVEIIEGDALKVD 88 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhCCEEEEEECCHH-HHHHHHHHhccC--------------CCEEEEEeccccCC
Confidence 468999999999887777652 35667788743 333322222211 46788888887644
No 123
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=36.39 E-value=3.2e+02 Score=24.58 Aligned_cols=110 Identities=11% Similarity=0.092 Sum_probs=60.5
Q ss_pred CccEEEEeCCC--CcchhhhhccCCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhH
Q 019738 118 REAQVVLLGAG--MDTRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLE 194 (336)
Q Consensus 118 g~~QVV~LGaG--lDTr~~RL~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~ 194 (336)
+.+.|+.+|+| +.|..+-..-+++.+++-||. |+..+.-++.++..+- .++++++-.|.. +.+.
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~-----------~~~I~~~~gda~--~~l~ 111 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL-----------DDRIEVIEGDAL--EVLP 111 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG-----------GGGEEEEES-HH--HHHH
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC-----------CCcEEEEEeccH--hhHH
Confidence 36789999865 555543332234455555554 7777777778877642 246778877765 4556
Q ss_pred HhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccC
Q 019738 195 KLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMN 247 (336)
Q Consensus 195 ~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~ 247 (336)
.|...+-...--.+||=- ....-...+..+.....+|+ ++++|=+-
T Consensus 112 ~l~~~~~~~~fD~VFiDa------~K~~y~~y~~~~~~ll~~gg-vii~DN~l 157 (205)
T PF01596_consen 112 ELANDGEEGQFDFVFIDA------DKRNYLEYFEKALPLLRPGG-VIIADNVL 157 (205)
T ss_dssp HHHHTTTTTSEEEEEEES------TGGGHHHHHHHHHHHEEEEE-EEEEETTT
T ss_pred HHHhccCCCceeEEEEcc------cccchhhHHHHHhhhccCCe-EEEEcccc
Confidence 665432111122344433 23444455666666776755 57777543
No 124
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=36.22 E-value=2.1e+02 Score=26.66 Aligned_cols=57 Identities=18% Similarity=0.254 Sum_probs=37.0
Q ss_pred ccEEEEeCCCCcchhhhhcc-CCCceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCCh
Q 019738 119 EAQVVLLGAGMDTRAYRLNC-LKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIREND 191 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~-~~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~ 191 (336)
...|+.+|||.=.....+.. ...+.-+|+| |++++.=++.+.. .+++++.+|+.+.+
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d-~~~~~~~~~~~~~---------------~~v~~i~~D~~~~~ 100 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAAKVTAVEID-RDLAPILAETFAE---------------DNLTIIEGDALKVD 100 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCCcEEEEECC-HHHHHHHHHhhcc---------------CceEEEEChhhcCC
Confidence 35899999998777666654 2467778888 4554433222211 36788888988653
No 125
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=34.19 E-value=90 Score=30.76 Aligned_cols=64 Identities=17% Similarity=0.267 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCccEEEEeCCCCcchhhhhccCCCceEEEcchHHHHHHHHHHHHhhh
Q 019738 99 IRTLWFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNCLKESDVFEVDFSQVLQVKTALIQTAM 164 (336)
Q Consensus 99 ~Rt~~iD~~v~~fl~~~~~g~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~P~vi~~K~~~l~~~~ 164 (336)
+||....+.+.+.=.-+ ..+.|+.+|||-.-...--...+-.++|-||.-++...+.+++..++
T Consensus 43 VRt~aYr~~i~~n~~lf--~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~ 106 (346)
T KOG1499|consen 43 VRTLAYRNAILQNKHLF--KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNG 106 (346)
T ss_pred hhHHHHHHHHhcchhhc--CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcC
Confidence 67777666665432223 25689999999554432222235689999999999999999998875
No 126
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=33.81 E-value=3e+02 Score=24.81 Aligned_cols=111 Identities=10% Similarity=0.104 Sum_probs=53.1
Q ss_pred ccEEEEeCCCCcchhhhhccC---CCceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHH
Q 019738 119 EAQVVLLGAGMDTRAYRLNCL---KESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEK 195 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~~---~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~ 195 (336)
...++.||||.=--.+..... ..+.=+|+. |+..+.-...++.-..... ........+.++..|+.+.++.+.
T Consensus 43 ~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~-~~~~~~a~~~~~~~~~~~~---~~g~~~~~v~l~~gdfl~~~~~~~ 118 (205)
T PF08123_consen 43 DDVFYDLGSGVGNVVFQAALQTGCKKSVGIEIL-PELHDLAEELLEELKKRMK---HYGKRPGKVELIHGDFLDPDFVKD 118 (205)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH--SEEEEEE-S-HHHHHHHHHHHHHHHHHHH---HCTB---EEEEECS-TTTHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHcCCcEEEEEEec-hHHHHHHHHHHHHHHHHHH---HhhcccccceeeccCccccHhHhh
Confidence 569999999998776555431 234556776 3343333333222111000 001123567888999998887765
Q ss_pred hhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEE
Q 019738 196 LQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLL 242 (336)
Q Consensus 196 L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~ 242 (336)
+.. ..|++.+-... ++++-..+| ..+...+++|+.+|.
T Consensus 119 ~~s------~AdvVf~Nn~~--F~~~l~~~L-~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 119 IWS------DADVVFVNNTC--FDPDLNLAL-AELLLELKPGARIIS 156 (205)
T ss_dssp HGH------C-SEEEE--TT--T-HHHHHHH-HHHHTTS-TT-EEEE
T ss_pred hhc------CCCEEEEeccc--cCHHHHHHH-HHHHhcCCCCCEEEE
Confidence 421 23455554432 466666666 444455678776553
No 127
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=32.92 E-value=1.7e+02 Score=25.45 Aligned_cols=88 Identities=14% Similarity=0.168 Sum_probs=49.0
Q ss_pred ccEEEEeCCCCcchhhhhccCCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHhh
Q 019738 119 EAQVVLLGAGMDTRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKLQ 197 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L~ 197 (336)
...|+.+|||.-.....+.......++-||. ++.++.-+ . .+..++..|+.+. +..+.
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~----~---------------~~~~~~~~d~~~~--l~~~~ 72 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACV----A---------------RGVNVIQGDLDEG--LEAFP 72 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHH----H---------------cCCeEEEEEhhhc--ccccC
Confidence 3589999999988766664323445566665 44432211 1 1234566676531 11111
Q ss_pred hcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhC
Q 019738 198 LSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKC 234 (336)
Q Consensus 198 ~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~ 234 (336)
.+.--++++-.++.+++. ...+++.+.+..
T Consensus 73 -----~~sfD~Vi~~~~l~~~~d--~~~~l~e~~r~~ 102 (194)
T TIGR02081 73 -----DKSFDYVILSQTLQATRN--PEEILDEMLRVG 102 (194)
T ss_pred -----CCCcCEEEEhhHhHcCcC--HHHHHHHHHHhC
Confidence 122336777778888853 455677776653
No 128
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=32.22 E-value=2e+02 Score=25.67 Aligned_cols=59 Identities=12% Similarity=0.139 Sum_probs=37.1
Q ss_pred ccEEEEeCCCCcchhhhhcc--CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCC
Q 019738 119 EAQVVLLGAGMDTRAYRLNC--LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRE 189 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~--~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d 189 (336)
...|+.+|||.=.....+.. ..+.+++-||. |++++.=++.+++.+. ++.+++..|..+
T Consensus 78 ~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~------------~~v~~~~~d~~~ 139 (215)
T TIGR00080 78 GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL------------DNVIVIVGDGTQ 139 (215)
T ss_pred cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC------------CCeEEEECCccc
Confidence 45899999997665554443 22345666664 7777665555555421 467888888764
No 129
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=31.94 E-value=2.1e+02 Score=26.59 Aligned_cols=38 Identities=13% Similarity=0.207 Sum_probs=24.3
Q ss_pred ccEEEEeCCCCcchhhhhcc--C--CCceEEEcch-HHHHHHH
Q 019738 119 EAQVVLLGAGMDTRAYRLNC--L--KESDVFEVDF-SQVLQVK 156 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~--~--~~~~~~EvD~-P~vi~~K 156 (336)
...|+.+|||-=.....+.. + ....++-+|. +++++.-
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A 128 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYA 128 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHH
Confidence 45799999997765555432 1 1246788887 5555443
No 130
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=31.14 E-value=1.3e+02 Score=28.59 Aligned_cols=132 Identities=10% Similarity=0.114 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCccEEEEeCCCCcchhhhhcc------C----CCceEE--EcchHHHHHHHHHHHHhh
Q 019738 96 ILAIRTLWFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNC------L----KESDVF--EVDFSQVLQVKTALIQTA 163 (336)
Q Consensus 96 ~~~~Rt~~iD~~v~~fl~~~~~g~~QVV~LGaGlDTr~~RL~~------~----~~~~~~--EvD~P~vi~~K~~~l~~~ 163 (336)
+-.+|...+..++..-- ++.-.|-+.||+.==-+|-+.- + ..+.++ |||.-.+.+.|+-+.+..
T Consensus 78 f~~l~~~v~p~l~~~~~----~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~ 153 (268)
T COG1352 78 FEELRDEVLPELVKRKK----GRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSR 153 (268)
T ss_pred HHHHHHHHHHHHHhhcc----CCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChh
Confidence 34556665555543211 1256788999988777777652 1 246665 555555555555555522
Q ss_pred hc--cCC----------CCCC-CccC---CCcEEEEeccCCCChhhHHhhhcCCCCCCcEEEEeeccccccChHHHHHHH
Q 019738 164 ME--FGD----------EQQH-PRMT---AKSLTTVAADIRENDWLEKLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVL 227 (336)
Q Consensus 164 ~~--~~~----------~~~~-~~l~---s~~y~~i~~DL~d~~~~~~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll 227 (336)
.. ..+ ..++ +.+. .+.+.+-..||.++.| ...+|| ++.+==||+||+.+.-.+++
T Consensus 154 ~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~----~~~~fD-----~IfCRNVLIYFd~~~q~~il 224 (268)
T COG1352 154 ELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP----FLGKFD-----LIFCRNVLIYFDEETQERIL 224 (268)
T ss_pred HhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc----ccCCCC-----EEEEcceEEeeCHHHHHHHH
Confidence 11 111 0011 1111 1334555556665444 122344 78899999999999999999
Q ss_pred HHHHHhCCCceEE
Q 019738 228 KLIADKCNLVHTV 240 (336)
Q Consensus 228 ~~l~~~~~~gs~~ 240 (336)
..+...+.+|+.+
T Consensus 225 ~~f~~~L~~gG~L 237 (268)
T COG1352 225 RRFADSLKPGGLL 237 (268)
T ss_pred HHHHHHhCCCCEE
Confidence 9999999887743
No 131
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=30.96 E-value=3.2e+02 Score=23.15 Aligned_cols=58 Identities=9% Similarity=0.050 Sum_probs=38.8
Q ss_pred cEEEEeccCCCChhhHHhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccC
Q 019738 179 SLTTVAADIRENDWLEKLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMN 247 (336)
Q Consensus 179 ~y~~i~~DL~d~~~~~~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~ 247 (336)
+..++..|..+... ..+.--++++-.++.+++ +..+.++.+.+.+.+|+.+++.|+..
T Consensus 27 ~i~~~~~d~~~lp~---------~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~ 84 (160)
T PLN02232 27 CIEWIEGDAIDLPF---------DDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPGSRVSILDFNK 84 (160)
T ss_pred ceEEEEechhhCCC---------CCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 56778888765321 111222445556667764 55688899999998988888888864
No 132
>PRK14968 putative methyltransferase; Provisional
Probab=30.63 E-value=3.3e+02 Score=22.96 Aligned_cols=60 Identities=15% Similarity=0.147 Sum_probs=36.8
Q ss_pred ccEEEEeCCCCcchhhhhccCCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCC
Q 019738 119 EAQVVLLGAGMDTRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRE 189 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d 189 (336)
...|+.+|||--.....+... +.+++-+|. |++++.-++.+..... ...+..++.+|+.+
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~----------~~~~~~~~~~d~~~ 84 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNI----------RNNGVEVIRSDLFE 84 (188)
T ss_pred CCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCC----------CCcceEEEeccccc
Confidence 357999999988877777653 455565665 6676655555543321 01125677777654
No 133
>COG3580 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.53 E-value=40 Score=32.70 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=27.2
Q ss_pred HHHHHhhcCC-CccEEEEeCCCCcchhhhhc-----cCCCc-eEEEcch
Q 019738 108 IEAALNSFNS-REAQVVLLGAGMDTRAYRLN-----CLKES-DVFEVDF 149 (336)
Q Consensus 108 v~~fl~~~~~-g~~QVV~LGaGlDTr~~RL~-----~~~~~-~~~EvD~ 149 (336)
..+|.++|++ .-.|+++.|||+|.--.-+- ..+.+ ++.++|-
T Consensus 264 AA~fvak~~nlegV~l~SFgCG~Davttd~i~eIl~~~nk~ytvlkIDE 312 (351)
T COG3580 264 AAKFVAKHPNLEGVQLVSFGCGLDAVTTDLIEEILEGHNKIYTVLKIDE 312 (351)
T ss_pred HHHHHhcCCCeeeEEEeecccCcchhHHHHHHHHHHhCCCeeEEEEecC
Confidence 4578888862 12599999999998654332 11223 6777774
No 134
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=29.12 E-value=1.3e+02 Score=28.74 Aligned_cols=60 Identities=22% Similarity=0.242 Sum_probs=38.5
Q ss_pred ccEEEEeCCCCcchhhhhcc-CCCceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCC
Q 019738 119 EAQVVLLGAGMDTRAYRLNC-LKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIREN 190 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~-~~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~ 190 (336)
...|+.+|||.=..-..+.. ...+.-+|+|..-+-..|+. +...+. ..++.++..|+.+.
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~-~~~~~~-----------~~~v~ii~~Dal~~ 97 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKR-FQNSPL-----------ASKLEVIEGDALKT 97 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHH-HHhcCC-----------CCcEEEEECCHhhh
Confidence 45899999998887666654 24578889995554444433 332210 14678888887653
No 135
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=27.79 E-value=2.6e+02 Score=26.81 Aligned_cols=96 Identities=13% Similarity=0.084 Sum_probs=48.3
Q ss_pred HHHhhcCCCccEEEEeCCCCcchhhhhccCCCceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCC
Q 019738 110 AALNSFNSREAQVVLLGAGMDTRAYRLNCLKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRE 189 (336)
Q Consensus 110 ~fl~~~~~g~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d 189 (336)
+.|...+ +...|-.+|||=--.+.+.. -.++-.|+-. .+-+.++||+++
T Consensus 173 ~~ik~r~-~~~vIaD~GCGEakiA~~~~----~kV~SfDL~a--------------------------~~~~V~~cDm~~ 221 (325)
T KOG3045|consen 173 RKIKRRP-KNIVIADFGCGEAKIASSER----HKVHSFDLVA--------------------------VNERVIACDMRN 221 (325)
T ss_pred HHHHhCc-CceEEEecccchhhhhhccc----cceeeeeeec--------------------------CCCceeeccccC
Confidence 3345444 34456699999665554332 2334444321 233567888877
Q ss_pred ChhhHHhhhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEEeccCc
Q 019738 190 NDWLEKLQLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLADFMNQ 248 (336)
Q Consensus 190 ~~~~~~L~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~D~~~~ 248 (336)
....+ -++=|+-++|.-|. ......|.-+.+.+.+|+.+.+++.-+.
T Consensus 222 vPl~d-----------~svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~SR 268 (325)
T KOG3045|consen 222 VPLED-----------ESVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKSR 268 (325)
T ss_pred CcCcc-----------CcccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhhh
Confidence 43211 11222223333333 2344555556666666666666666543
No 136
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=27.47 E-value=1.4e+02 Score=27.01 Aligned_cols=57 Identities=18% Similarity=0.140 Sum_probs=38.2
Q ss_pred cEEEEeCCCCcchhhhhcc--CCCceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCC
Q 019738 120 AQVVLLGAGMDTRAYRLNC--LKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIREN 190 (336)
Q Consensus 120 ~QVV~LGaGlDTr~~RL~~--~~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~ 190 (336)
+.|+.||||---.++=... +..+.-+|+|-..+-..|+..-+ . ..+..++.+|+++.
T Consensus 47 ~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~-l-------------~g~v~f~~~dv~~~ 105 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE-L-------------LGDVEFVVADVSDF 105 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh-h-------------CCceEEEEcchhhc
Confidence 4799999999888766654 34677778885555444443322 1 14678888898864
No 137
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=27.03 E-value=2e+02 Score=23.85 Aligned_cols=32 Identities=28% Similarity=0.263 Sum_probs=23.4
Q ss_pred CccEEEEeCCCCcchhhhhcc-----CCCceEEEcch
Q 019738 118 REAQVVLLGAGMDTRAYRLNC-----LKESDVFEVDF 149 (336)
Q Consensus 118 g~~QVV~LGaGlDTr~~RL~~-----~~~~~~~EvD~ 149 (336)
+..+||.+|||.==..+-|.. ..+..++-||.
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~ 61 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDC 61 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEEC
Confidence 467999999998877655554 35677777775
No 138
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=26.01 E-value=2.7e+02 Score=26.71 Aligned_cols=59 Identities=19% Similarity=0.212 Sum_probs=37.4
Q ss_pred cEEEEeCCCCcchhhhhcc-CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCC
Q 019738 120 AQVVLLGAGMDTRAYRLNC-LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRE 189 (336)
Q Consensus 120 ~QVV~LGaGlDTr~~RL~~-~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d 189 (336)
..|+.+|||.=.....+.. .++.+++-+|. |+.++.=++-++..+- ..++.++..|+.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l-----------~~~i~~~~~D~~~ 195 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL-----------EDRVTLIESDLFA 195 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----------CCcEEEEECchhh
Confidence 5799999999887766654 23456666665 6666655555444321 1356778778753
No 139
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=25.69 E-value=3.5e+02 Score=24.10 Aligned_cols=59 Identities=12% Similarity=0.119 Sum_probs=36.7
Q ss_pred ccEEEEeCCCCcchhhhhcc--CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCC
Q 019738 119 EAQVVLLGAGMDTRAYRLNC--LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRE 189 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~--~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d 189 (336)
...|+.+|||.=.....+.. ..+.+++-+|. |++++.-++.+++.+. +++.++..|...
T Consensus 77 g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~------------~~v~~~~gd~~~ 138 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY------------DNVEVIVGDGTL 138 (212)
T ss_pred cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CCeEEEECCccc
Confidence 45899999986555443332 12345555554 6777766666665421 467888888764
No 140
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=25.51 E-value=2.1e+02 Score=26.95 Aligned_cols=99 Identities=8% Similarity=0.053 Sum_probs=59.1
Q ss_pred CccEEEEeCCCCcchhhhhccCCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHh
Q 019738 118 REAQVVLLGAGMDTRAYRLNCLKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKL 196 (336)
Q Consensus 118 g~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L 196 (336)
+.+-++.+|||-=-.+.-+... --.++-+|. +.+++ ++.+.+ ..+|+..+.-+.+.+..+ |
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~----~a~k~~------------~~~y~~t~~~ms~~~~v~-L 94 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLK----VAKKHP------------PVTYCHTPSTMSSDEMVD-L 94 (261)
T ss_pred CcceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHH----HhhcCC------------CcccccCCcccccccccc-c
Confidence 4558999999988444444432 345677786 44443 333332 146777777776644333 3
Q ss_pred hhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceE
Q 019738 197 QLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHT 239 (336)
Q Consensus 197 ~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~ 239 (336)
. |.+.+.-.+..+||+ .|++-+..-+.+..+-+ ++|..
T Consensus 95 ~--g~e~SVDlI~~Aqa~-HWFdle~fy~~~~rvLR--k~Gg~ 132 (261)
T KOG3010|consen 95 L--GGEESVDLITAAQAV-HWFDLERFYKEAYRVLR--KDGGL 132 (261)
T ss_pred c--CCCcceeeehhhhhH-HhhchHHHHHHHHHHcC--CCCCE
Confidence 2 224555566667776 89998887777776655 34443
No 141
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=24.11 E-value=4.6e+02 Score=22.50 Aligned_cols=96 Identities=9% Similarity=0.076 Sum_probs=50.3
Q ss_pred ccEEEEeCCCCcchhhhhcc-CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHh
Q 019738 119 EAQVVLLGAGMDTRAYRLNC-LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKL 196 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~-~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L 196 (336)
...|+.+|||.=.....+.. .++.+++=+|. |+.++.=++.+.... ..+.+++..|... .+
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~------------~~~i~~~~~d~~~-----~~ 94 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG------------CGNIDIIPGEAPI-----EL 94 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC------------CCCeEEEecCchh-----hc
Confidence 45899999988766554432 23344544454 555544443333321 0245666666531 11
Q ss_pred hhcCCCCCCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEE
Q 019738 197 QLSGYKPEKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLL 242 (336)
Q Consensus 197 ~~~g~d~~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~ 242 (336)
. ..| -++++-+...+ ...+++++.+.+.+|+.+++
T Consensus 95 ~-~~~-----D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~ 129 (187)
T PRK08287 95 P-GKA-----DAIFIGGSGGN-----LTAIIDWSLAHLHPGGRLVL 129 (187)
T ss_pred C-cCC-----CEEEECCCccC-----HHHHHHHHHHhcCCCeEEEE
Confidence 1 112 23444444333 35678888888877765443
No 142
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=24.05 E-value=6.1e+02 Score=27.34 Aligned_cols=106 Identities=9% Similarity=0.008 Sum_probs=56.1
Q ss_pred ccEEEEeCCCCcchhhhhccCC--CceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHh
Q 019738 119 EAQVVLLGAGMDTRAYRLNCLK--ESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKL 196 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~~~--~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L 196 (336)
.+.|++||||.=....-+...+ .+.-+|++-..+-..|+.+ ..++. ...+.+++.+|..+ |++.+
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~-~~ng~----------~~~~v~~i~~D~~~--~l~~~ 605 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNF-ALNGL----------SGRQHRLIQADCLA--WLKEA 605 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH-HHhCC----------CccceEEEEccHHH--HHHHc
Confidence 3589999999988877776532 2555555544444444433 33321 11367889999863 55443
Q ss_pred hhcCCC---CCCcEEEEeec---cccccChHHHHHHHHHHHHhCCCceEE
Q 019738 197 QLSGYK---PEKNTVWVLEG---IIYYLLDIHAMQVLKLIADKCNLVHTV 240 (336)
Q Consensus 197 ~~~g~d---~~~Ptl~i~EG---vl~YL~~~~~~~Ll~~l~~~~~~gs~~ 240 (336)
...|| -+-|.+--.+. +.. ....-..++..+.+.+.+|+.+
T Consensus 606 -~~~fDlIilDPP~f~~~~~~~~~~~--~~~~y~~l~~~a~~lL~~gG~l 652 (702)
T PRK11783 606 -REQFDLIFIDPPTFSNSKRMEDSFD--VQRDHVALIKDAKRLLRPGGTL 652 (702)
T ss_pred -CCCcCEEEECCCCCCCCCccchhhh--HHHHHHHHHHHHHHHcCCCCEE
Confidence 11233 12222211111 100 0223456777877777776643
No 143
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=23.90 E-value=1.8e+02 Score=27.98 Aligned_cols=58 Identities=16% Similarity=0.156 Sum_probs=45.0
Q ss_pred CcEEEEeccCCCChhhHHhhhcCCCCCCcEEE-EeeccccccC-hHHHHHHHHHHHHhCC
Q 019738 178 KSLTTVAADIRENDWLEKLQLSGYKPEKNTVW-VLEGIIYYLL-DIHAMQVLKLIADKCN 235 (336)
Q Consensus 178 ~~y~~i~~DL~d~~~~~~L~~~g~d~~~Ptl~-i~EGvl~YL~-~~~~~~Ll~~l~~~~~ 235 (336)
.+|-.=+.+..+.+|+.++.++-=..+.|+++ +++|-.-|+. .+....++..+++..+
T Consensus 16 ~~yAvpAfN~~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~ 75 (286)
T COG0191 16 NGYAVPAFNINNLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYG 75 (286)
T ss_pred cCCceeeeeecCHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCC
Confidence 46766667999999998654433345678665 6799999999 7999999999998875
No 144
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=23.82 E-value=6.8e+02 Score=24.35 Aligned_cols=97 Identities=10% Similarity=0.021 Sum_probs=54.3
Q ss_pred cEEEEeCCCCcchhhhhcc-CC--CceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHh
Q 019738 120 AQVVLLGAGMDTRAYRLNC-LK--ESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKL 196 (336)
Q Consensus 120 ~QVV~LGaGlDTr~~RL~~-~~--~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L 196 (336)
..|+.||||.=.....+.. .+ .+.-+|++. ..++.-++.++..+ -...++..|+.+. +
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~-~Al~~A~~nl~~n~-------------l~~~~~~~D~~~~-----~ 258 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSA-AALESSRATLAANG-------------LEGEVFASNVFSD-----I 258 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCH-HHHHHHHHHHHHcC-------------CCCEEEEcccccc-----c
Confidence 4799999999888766654 13 345556653 44444343444331 1234566666431 1
Q ss_pred hhcCCCCCCcEEEEeeccccc---cChHHHHHHHHHHHHhCCCceEEE
Q 019738 197 QLSGYKPEKNTVWVLEGIIYY---LLDIHAMQVLKLIADKCNLVHTVL 241 (336)
Q Consensus 197 ~~~g~d~~~Ptl~i~EGvl~Y---L~~~~~~~Ll~~l~~~~~~gs~~l 241 (336)
...| -++|+--.+.+ ...+...++|+.+.+.+.+|+.++
T Consensus 259 -~~~f-----DlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~ 300 (342)
T PRK09489 259 -KGRF-----DMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELR 300 (342)
T ss_pred -CCCc-----cEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEE
Confidence 1112 24444322222 245678899999999987776544
No 145
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=22.83 E-value=2.4e+02 Score=20.25 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=24.5
Q ss_pred CCcEEEEeeccccccChHHHHHHHHHHHHhCCCceEEEEE
Q 019738 204 EKNTVWVLEGIIYYLLDIHAMQVLKLIADKCNLVHTVLLA 243 (336)
Q Consensus 204 ~~Ptl~i~EGvl~YL~~~~~~~Ll~~l~~~~~~gs~~l~~ 243 (336)
..-|+++...-+.+.+++++++|.+|+.+ |..+++.
T Consensus 34 ~~~tll~i~~~~~~~~~~~~~~l~~~v~~----G~~lvl~ 69 (70)
T PF14258_consen 34 DDGTLLVIGPDLRLSEPEEAEALLEWVEA----GNTLVLA 69 (70)
T ss_pred CCCEEEEEeCCCCCCchHHHHHHHHHHHc----CCEEEEe
Confidence 45577777777554446999999999973 3455543
No 146
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=22.64 E-value=4e+02 Score=25.38 Aligned_cols=77 Identities=8% Similarity=0.022 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccEEEEeCCCCcchhhhhccC-CCceEEEcchHHHHHHHHHHHHhhhccCCCCCCCcc
Q 019738 97 LAIRTLWFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNCL-KESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRM 175 (336)
Q Consensus 97 ~~~Rt~~iD~~v~~fl~~~~~g~~QVV~LGaGlDTr~~RL~~~-~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l 175 (336)
..+...+++.+ .+++...+ ...|+.||||.=+....+... ..+.-+|++ |+.++.=++-++..+
T Consensus 155 ~~~~~~l~~~v-~~~l~~~~--~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s-~~av~~A~~n~~~~~----------- 219 (315)
T PRK03522 155 PAVAAQLYATA-RDWVRELP--PRSMWDLFCGVGGFGLHCATPGMQLTGIEIS-AEAIACAKQSAAELG----------- 219 (315)
T ss_pred HHHHHHHHHHH-HHHHHhcC--CCEEEEccCCCCHHHHHHHhcCCEEEEEeCC-HHHHHHHHHHHHHcC-----------
Confidence 34445555433 45555332 368999999998887777653 234444555 444444333333331
Q ss_pred CCCcEEEEeccCCC
Q 019738 176 TAKSLTTVAADIRE 189 (336)
Q Consensus 176 ~s~~y~~i~~DL~d 189 (336)
-++.+++..|+.+
T Consensus 220 -l~~v~~~~~D~~~ 232 (315)
T PRK03522 220 -LTNVQFQALDSTQ 232 (315)
T ss_pred -CCceEEEEcCHHH
Confidence 1367888888853
No 147
>PRK05785 hypothetical protein; Provisional
Probab=22.62 E-value=2.6e+02 Score=25.32 Aligned_cols=39 Identities=18% Similarity=0.328 Sum_probs=28.8
Q ss_pred ccEEEEeCCCCcchhhhhccCCCceEEEcch-HHHHHHHH
Q 019738 119 EAQVVLLGAGMDTRAYRLNCLKESDVFEVDF-SQVLQVKT 157 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~~~~~~~~EvD~-P~vi~~K~ 157 (336)
...|+.||||-=.....+....+..++-||+ +++++.-+
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~ 91 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNL 91 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHH
Confidence 4589999999998777776422468889998 77766543
No 148
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=22.47 E-value=2.1e+02 Score=27.64 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=35.0
Q ss_pred cEEEEeCCCCcchhhhhcc-C--CCceEEEcchHHHHHHHHHHHHhh
Q 019738 120 AQVVLLGAGMDTRAYRLNC-L--KESDVFEVDFSQVLQVKTALIQTA 163 (336)
Q Consensus 120 ~QVV~LGaGlDTr~~RL~~-~--~~~~~~EvD~P~vi~~K~~~l~~~ 163 (336)
..|+.||||+=...-.+.. . ..++.+|+|+..+-..|+.+-.+.
T Consensus 160 ~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~ 206 (300)
T COG2813 160 GKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG 206 (300)
T ss_pred CcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcC
Confidence 3799999999999888765 2 478999999999977777665443
No 149
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=22.40 E-value=2.7e+02 Score=24.72 Aligned_cols=97 Identities=15% Similarity=0.173 Sum_probs=54.8
Q ss_pred ccEEEEeCCCCcchhhhhcc-CCCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhhHHh
Q 019738 119 EAQVVLLGAGMDTRAYRLNC-LKESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWLEKL 196 (336)
Q Consensus 119 ~~QVV~LGaGlDTr~~RL~~-~~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~~~L 196 (336)
...+|.+|||.=.....+.. .++..|+=||. ...+..=.+.+...+ -.|++++.+|... .++.+
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~------------l~Nv~~~~~da~~--~l~~~ 83 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG------------LKNVRFLRGDARE--LLRRL 83 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT------------TSSEEEEES-CTT--HHHHH
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc------------ccceEEEEccHHH--HHhhc
Confidence 34899999999887766654 35777777765 333333333333321 2689999999875 34444
Q ss_pred hhcCCCCCCcEEEEeeccccccChHH-----------HHHHHHHHHHhCCCce
Q 019738 197 QLSGYKPEKNTVWVLEGIIYYLLDIH-----------AMQVLKLIADKCNLVH 238 (336)
Q Consensus 197 ~~~g~d~~~Ptl~i~EGvl~YL~~~~-----------~~~Ll~~l~~~~~~gs 238 (336)
.. ++. .+.+..+++..- ...++..+++.+.+|+
T Consensus 84 ~~----~~~-----v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG 127 (195)
T PF02390_consen 84 FP----PGS-----VDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGG 127 (195)
T ss_dssp ST----TTS-----EEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEE
T ss_pred cc----CCc-----hheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCC
Confidence 22 121 333444444221 4578888888887665
No 150
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=22.03 E-value=2.3e+02 Score=27.32 Aligned_cols=85 Identities=19% Similarity=0.181 Sum_probs=59.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcCCCccEEEEeCCCCcchhhhhcc-CCCceEEEcchHHHHHHHHHHHHhhhccCCCCCC
Q 019738 94 GVILAIRTLWFDSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNC-LKESDVFEVDFSQVLQVKTALIQTAMEFGDEQQH 172 (336)
Q Consensus 94 ~~~~~~Rt~~iD~~v~~fl~~~~~g~~QVV~LGaGlDTr~~RL~~-~~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~ 172 (336)
+..+.-+.-.+|.++.+.--+ ....|+.+|-|-=..--+|-. ...+.-+|+| |-+++.=.++.+.++.
T Consensus 37 GQHilkNp~v~~~I~~ka~~k---~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~D-prmvael~krv~gtp~------- 105 (315)
T KOG0820|consen 37 GQHILKNPLVIDQIVEKADLK---PTDVVLEVGPGTGNLTVKLLEAGKKVVAVEID-PRMVAELEKRVQGTPK------- 105 (315)
T ss_pred chhhhcCHHHHHHHHhccCCC---CCCEEEEeCCCCCHHHHHHHHhcCeEEEEecC-cHHHHHHHHHhcCCCc-------
Confidence 456777888888888765332 256899999999888888876 3578889999 5555555555555532
Q ss_pred CccCCCcEEEEeccCCCChhh
Q 019738 173 PRMTAKSLTTVAADIRENDWL 193 (336)
Q Consensus 173 ~~l~s~~y~~i~~DL~d~~~~ 193 (336)
+...+.+.+|+...+|.
T Consensus 106 ----~~kLqV~~gD~lK~d~P 122 (315)
T KOG0820|consen 106 ----SGKLQVLHGDFLKTDLP 122 (315)
T ss_pred ----cceeeEEecccccCCCc
Confidence 34678888898766543
No 151
>PLN02476 O-methyltransferase
Probab=21.91 E-value=6.9e+02 Score=23.73 Aligned_cols=102 Identities=13% Similarity=0.105 Sum_probs=60.7
Q ss_pred CccEEEEeCCCCcchhhhhcc--CCC--ceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhh
Q 019738 118 REAQVVLLGAGMDTRAYRLNC--LKE--SDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWL 193 (336)
Q Consensus 118 g~~QVV~LGaGlDTr~~RL~~--~~~--~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~ 193 (336)
+.+.|+.+|+|.=--...+.. +++ +.-+|.| |+..+.-++.+++.+- ..+.+++..|..+ .+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d-~e~~~~Ar~n~~~aGl-----------~~~I~li~GdA~e--~L 183 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERD-SNSLEVAKRYYELAGV-----------SHKVNVKHGLAAE--SL 183 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECC-HHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHH--HH
Confidence 357899999876655555543 223 4444555 5666777777776531 2467788877763 45
Q ss_pred HHhhhc----CCCCCCcEEEEeeccccccC--hHHHHHHHHHHHHhCCCceEEEEEecc
Q 019738 194 EKLQLS----GYKPEKNTVWVLEGIIYYLL--DIHAMQVLKLIADKCNLVHTVLLADFM 246 (336)
Q Consensus 194 ~~L~~~----g~d~~~Ptl~i~EGvl~YL~--~~~~~~Ll~~l~~~~~~gs~~l~~D~~ 246 (336)
..|... .|| +.|++ ...-...++.+.+...+|+ ++++|=+
T Consensus 184 ~~l~~~~~~~~FD------------~VFIDa~K~~Y~~y~e~~l~lL~~GG-vIV~DNv 229 (278)
T PLN02476 184 KSMIQNGEGSSYD------------FAFVDADKRMYQDYFELLLQLVRVGG-VIVMDNV 229 (278)
T ss_pred HHHHhcccCCCCC------------EEEECCCHHHHHHHHHHHHHhcCCCc-EEEEecC
Confidence 544321 233 22333 4455677788778887765 4666643
No 152
>PRK04148 hypothetical protein; Provisional
Probab=21.61 E-value=2.5e+02 Score=23.79 Aligned_cols=52 Identities=21% Similarity=0.243 Sum_probs=29.4
Q ss_pred cEEEEeCCCCcc-hhhhhccC-CCceEEEcchHHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCCh
Q 019738 120 AQVVLLGAGMDT-RAYRLNCL-KESDVFEVDFSQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIREND 191 (336)
Q Consensus 120 ~QVV~LGaGlDT-r~~RL~~~-~~~~~~EvD~P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~ 191 (336)
..|+.+|||+=. .+-.|... .++.-+|++-..+-..|.. ..+.+-.|+.+++
T Consensus 18 ~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~--------------------~~~~v~dDlf~p~ 71 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL--------------------GLNAFVDDLFNPN 71 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh--------------------CCeEEECcCCCCC
Confidence 569999999543 34455542 2455555554433222221 2367888998764
No 153
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=21.01 E-value=1.6e+02 Score=26.87 Aligned_cols=62 Identities=21% Similarity=0.378 Sum_probs=42.3
Q ss_pred EEEEeCCCCcchhhhhccCC-CceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEEEeccCCCChhh
Q 019738 121 QVVLLGAGMDTRAYRLNCLK-ESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTTVAADIRENDWL 193 (336)
Q Consensus 121 QVV~LGaGlDTr~~RL~~~~-~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~i~~DL~d~~~~ 193 (336)
.|+.||||-=..-++|...+ .-...-||+ +..++.-+.+-+..+ . +..+++-..|+.+++|.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~-~----------~n~I~f~q~DI~~~~~~ 133 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG-F----------SNEIRFQQLDITDPDFL 133 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC-C----------CcceeEEEeeccCCccc
Confidence 79999999999999998621 122567887 666666444333322 1 23478888999988776
No 154
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=20.75 E-value=2e+02 Score=27.52 Aligned_cols=57 Identities=5% Similarity=-0.021 Sum_probs=43.1
Q ss_pred CcEEEEeccCCCChhhHHhhhcCCCCCCcEEE-EeeccccccChHHHHHHHHHHHHhC
Q 019738 178 KSLTTVAADIRENDWLEKLQLSGYKPEKNTVW-VLEGIIYYLLDIHAMQVLKLIADKC 234 (336)
Q Consensus 178 ~~y~~i~~DL~d~~~~~~L~~~g~d~~~Ptl~-i~EGvl~YL~~~~~~~Ll~~l~~~~ 234 (336)
.+|-..+.+..+.++...+.++-=..+.|+++ ++++.+-|+..+....++..+++..
T Consensus 16 ~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~ 73 (286)
T PRK12738 16 NGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTY 73 (286)
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHC
Confidence 57888888999888876543322234678766 6799999999999999999998875
No 155
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=20.15 E-value=3.1e+02 Score=25.75 Aligned_cols=73 Identities=18% Similarity=0.301 Sum_probs=41.2
Q ss_pred HHHHHHHHhhcCCCccEEEEeCCCCcchhhhhccC-CCceEEEcch-HHHHHHHHHHHHhhhccCCCCCCCccCCCcEEE
Q 019738 105 DSQIEAALNSFNSREAQVVLLGAGMDTRAYRLNCL-KESDVFEVDF-SQVLQVKTALIQTAMEFGDEQQHPRMTAKSLTT 182 (336)
Q Consensus 105 D~~v~~fl~~~~~g~~QVV~LGaGlDTr~~RL~~~-~~~~~~EvD~-P~vi~~K~~~l~~~~~~~~~~~~~~l~s~~y~~ 182 (336)
|.++.......+ ..+.|+.||||-=..+.=+... +.+.+.-|+. ++..+.-++-++-++ -.++..+
T Consensus 32 DaiLL~~~~~~~-~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~-----------l~~ri~v 99 (248)
T COG4123 32 DAILLAAFAPVP-KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP-----------LEERIQV 99 (248)
T ss_pred HHHHHHhhcccc-cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc-----------chhceeE
Confidence 444443333332 4678999999999998887753 3355555554 333333333333221 1256777
Q ss_pred EeccCCC
Q 019738 183 VAADIRE 189 (336)
Q Consensus 183 i~~DL~d 189 (336)
+..|+.+
T Consensus 100 ~~~Di~~ 106 (248)
T COG4123 100 IEADIKE 106 (248)
T ss_pred ehhhHHH
Confidence 7778764
Done!