Query 019740
Match_columns 336
No_of_seqs 332 out of 1309
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 06:24:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019740.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019740hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xjy_A Rhombotin-2; oncoprotei 99.9 1.5E-22 5.2E-27 169.6 4.7 102 1-114 21-126 (131)
2 2rgt_A Fusion of LIM/homeobox 99.9 1.2E-22 4E-27 178.1 3.9 104 1-116 25-128 (169)
3 2xqn_T Testin, TESS; metal-bin 99.9 2.8E-22 9.6E-27 167.1 5.5 100 1-113 22-123 (126)
4 2jtn_A LIM domain-binding prot 99.8 5.3E-22 1.8E-26 175.8 6.3 102 1-114 79-180 (182)
5 1b8t_A Protein (CRP1); LIM dom 99.8 9.1E-22 3.1E-26 175.8 4.9 111 1-127 26-184 (192)
6 1rut_X Flinc4, fusion protein 99.8 1.1E-21 3.9E-26 174.7 2.8 102 1-114 24-129 (188)
7 2cup_A Skeletal muscle LIM-pro 99.7 1.1E-18 3.7E-23 139.7 4.4 77 1-88 25-101 (101)
8 2cuq_A Four and A half LIM dom 99.6 2.6E-15 8.7E-20 115.1 6.3 78 28-122 1-78 (80)
9 1x3h_A Leupaxin; paxillin fami 99.6 3.2E-15 1.1E-19 114.6 6.3 78 28-122 1-78 (80)
10 1m3v_A FLIN4, fusion of the LI 99.6 1.5E-16 5E-21 132.3 -1.6 86 1-114 24-113 (122)
11 2ehe_A Four and A half LIM dom 99.6 2.3E-15 7.8E-20 116.1 5.0 80 28-122 1-80 (82)
12 2egq_A FHL1 protein; LIM domai 99.5 5E-15 1.7E-19 112.7 5.7 73 28-113 1-76 (77)
13 2dlo_A Thyroid receptor-intera 99.5 7.7E-15 2.6E-19 112.9 6.5 78 28-122 2-79 (81)
14 1x6a_A LIMK-2, LIM domain kina 99.5 5.4E-15 1.8E-19 113.7 5.1 74 28-114 1-74 (81)
15 1x63_A Skeletal muscle LIM-pro 99.5 2E-14 7E-19 110.6 6.4 80 28-122 1-80 (82)
16 1j2o_A FLIN2, fusion of rhombo 99.4 2.6E-14 9E-19 117.2 2.8 82 1-114 22-105 (114)
17 1v6g_A Actin binding LIM prote 99.4 1.5E-13 5.2E-18 105.6 6.3 72 29-114 2-73 (81)
18 2xqn_T Testin, TESS; metal-bin 99.3 6E-14 2.1E-18 116.4 -1.5 112 40-182 1-123 (126)
19 1iml_A CRIP, cysteine rich int 99.3 9.5E-13 3.3E-17 99.9 2.6 53 1-53 19-72 (76)
20 1x68_A FHL5 protein; four-and- 99.2 2.4E-12 8.2E-17 97.8 3.0 49 1-49 27-75 (76)
21 1a7i_A QCRP2 (LIM1); LIM domai 99.2 1.3E-12 4.3E-17 100.4 0.7 52 1-52 26-77 (81)
22 1m3v_A FLIN4, fusion of the LI 99.2 1.8E-12 6.1E-17 107.5 1.7 106 40-181 3-111 (122)
23 1x68_A FHL5 protein; four-and- 99.2 1.2E-11 4.1E-16 93.9 5.4 71 39-124 2-74 (76)
24 2jtn_A LIM domain-binding prot 99.2 3.9E-12 1.3E-16 112.2 1.8 122 28-181 43-178 (182)
25 2d8z_A Four and A half LIM dom 99.2 4.4E-12 1.5E-16 94.5 1.8 47 1-47 23-69 (70)
26 2dar_A PDZ and LIM domain prot 99.2 5.3E-12 1.8E-16 99.0 1.8 47 1-47 43-89 (90)
27 2cur_A Skeletal muscle LIM-pro 99.2 4.8E-12 1.6E-16 94.1 1.2 47 1-47 23-69 (69)
28 1wyh_A SLIM 2, skeletal muscle 99.2 7.1E-12 2.4E-16 93.8 2.0 47 1-47 25-71 (72)
29 2dar_A PDZ and LIM domain prot 99.2 4.8E-11 1.6E-15 93.5 6.8 75 31-122 14-88 (90)
30 2ehe_A Four and A half LIM dom 99.2 1.6E-11 5.6E-16 94.2 3.8 47 1-47 35-81 (82)
31 1x4l_A Skeletal muscle LIM-pro 99.1 1.2E-11 3.9E-16 92.8 2.6 46 1-46 27-72 (72)
32 1x4k_A Skeletal muscle LIM-pro 99.1 7.2E-12 2.5E-16 93.7 1.4 47 1-47 25-71 (72)
33 2dj7_A Actin-binding LIM prote 99.1 9.2E-12 3.2E-16 95.9 2.0 46 1-47 34-79 (80)
34 1x4k_A Skeletal muscle LIM-pro 99.1 5.5E-11 1.9E-15 88.9 5.9 69 39-122 2-70 (72)
35 2cur_A Skeletal muscle LIM-pro 99.1 4.8E-11 1.6E-15 88.7 5.5 66 40-122 3-68 (69)
36 2cu8_A Cysteine-rich protein 2 99.1 1.1E-11 3.9E-16 93.9 1.9 47 1-47 28-75 (76)
37 2cup_A Skeletal muscle LIM-pro 99.1 4E-11 1.4E-15 95.4 5.1 75 40-129 3-77 (101)
38 2d8z_A Four and A half LIM dom 99.1 5.1E-11 1.7E-15 88.7 5.3 67 39-122 2-68 (70)
39 1g47_A Pinch protein; LIM doma 99.1 7.8E-12 2.7E-16 94.7 0.7 46 1-46 31-76 (77)
40 1wig_A KIAA1808 protein; LIM d 99.1 4.4E-11 1.5E-15 90.3 4.4 62 39-114 2-63 (73)
41 1nyp_A Pinch protein; LIM doma 99.1 1.7E-11 5.9E-16 90.3 1.7 44 1-44 23-66 (66)
42 2d8y_A Eplin protein; LIM doma 99.1 3.1E-11 1.1E-15 94.8 2.9 52 1-52 34-85 (91)
43 2cuq_A Four and A half LIM dom 99.1 2.5E-11 8.6E-16 92.7 2.1 47 1-47 33-79 (80)
44 2xjy_A Rhombotin-2; oncoprotei 99.1 2.2E-11 7.7E-16 101.3 1.8 112 42-183 2-126 (131)
45 1x3h_A Leupaxin; paxillin fami 99.1 2.1E-11 7.3E-16 93.1 1.4 47 1-47 33-79 (80)
46 1wyh_A SLIM 2, skeletal muscle 99.1 8.3E-11 2.8E-15 87.9 4.4 69 39-122 2-70 (72)
47 2dlo_A Thyroid receptor-intera 99.1 2.8E-11 9.7E-16 92.8 1.8 47 1-47 33-80 (81)
48 1rut_X Flinc4, fusion protein 99.1 4.9E-12 1.7E-16 112.2 -3.0 117 40-186 3-132 (188)
49 2cu8_A Cysteine-rich protein 2 99.1 2.2E-10 7.4E-15 86.8 6.6 68 39-122 6-74 (76)
50 1x64_A Alpha-actinin-2 associa 99.1 3.4E-11 1.1E-15 94.2 2.0 46 1-46 43-88 (89)
51 1x4l_A Skeletal muscle LIM-pro 99.1 1.5E-10 5.2E-15 86.6 5.4 68 40-121 3-71 (72)
52 1iml_A CRIP, cysteine rich int 99.0 2E-10 6.7E-15 87.0 5.0 68 43-126 1-69 (76)
53 2d8x_A Protein pinch; LIM doma 99.0 4.7E-11 1.6E-15 88.9 1.2 46 1-46 23-68 (70)
54 1x63_A Skeletal muscle LIM-pro 99.0 6.2E-11 2.1E-15 90.9 1.8 46 1-46 35-80 (82)
55 1g47_A Pinch protein; LIM doma 99.0 2.3E-10 8E-15 86.5 5.0 68 40-122 9-76 (77)
56 2iyb_E Testin, TESS, TES; LIM 99.0 2E-10 6.8E-15 84.6 4.3 61 41-114 1-64 (65)
57 2cor_A Pinch protein; LIM doma 99.0 1E-10 3.4E-15 89.7 2.7 45 1-46 33-77 (79)
58 1x62_A C-terminal LIM domain p 99.0 2.5E-11 8.5E-16 92.9 -0.8 46 1-46 33-78 (79)
59 1nyp_A Pinch protein; LIM doma 99.0 1.3E-10 4.4E-15 85.5 3.1 60 39-113 2-61 (66)
60 1a7i_A QCRP2 (LIM1); LIM domai 99.0 1.8E-10 6.3E-15 88.2 4.1 70 41-126 6-75 (81)
61 1x61_A Thyroid receptor intera 99.0 3.4E-10 1.2E-14 84.6 5.3 63 40-115 3-65 (72)
62 2l3k_A Rhombotin-2, linker, LI 99.0 1.2E-10 4.2E-15 96.4 2.9 72 37-122 1-74 (123)
63 1j2o_A FLIN2, fusion of rhombo 99.0 3.8E-10 1.3E-14 92.3 5.2 100 42-181 3-103 (114)
64 3f6q_B LIM and senescent cell 99.0 3.4E-10 1.2E-14 84.0 4.6 64 37-113 6-69 (72)
65 2d8x_A Protein pinch; LIM doma 99.0 5.4E-10 1.8E-14 83.1 5.3 60 40-114 3-62 (70)
66 1b8t_A Protein (CRP1); LIM dom 99.0 4.4E-11 1.5E-15 106.3 -0.8 59 42-114 7-65 (192)
67 1x61_A Thyroid receptor intera 99.0 1.3E-10 4.3E-15 87.0 1.4 47 1-48 25-71 (72)
68 2l3k_A Rhombotin-2, linker, LI 98.9 2E-10 6.9E-15 95.2 2.3 56 1-56 28-84 (123)
69 1wig_A KIAA1808 protein; LIM d 98.9 2.6E-10 9E-15 86.0 2.7 44 1-44 23-67 (73)
70 2dj7_A Actin-binding LIM prote 98.9 1E-09 3.6E-14 84.3 5.8 65 41-122 14-78 (80)
71 2cor_A Pinch protein; LIM doma 98.9 9.2E-10 3.1E-14 84.3 4.8 64 40-121 13-76 (79)
72 2co8_A NEDD9 interacting prote 98.9 6.6E-10 2.3E-14 85.7 4.0 45 1-45 34-80 (82)
73 1x64_A Alpha-actinin-2 associa 98.9 1.1E-09 3.7E-14 85.5 5.0 65 40-121 23-87 (89)
74 2d8y_A Eplin protein; LIM doma 98.9 1.2E-09 4E-14 85.6 4.5 67 40-122 13-79 (91)
75 1x62_A C-terminal LIM domain p 98.9 6E-10 2.1E-14 85.1 2.2 59 41-114 14-72 (79)
76 3f6q_B LIM and senescent cell 98.9 3.2E-10 1.1E-14 84.2 0.2 42 1-42 31-72 (72)
77 2l4z_A DNA endonuclease RBBP8, 98.8 1.5E-09 5E-14 90.4 4.2 62 39-113 58-120 (123)
78 1x6a_A LIMK-2, LIM domain kina 98.8 8.4E-10 2.9E-14 84.4 1.8 46 1-46 33-80 (81)
79 2l4z_A DNA endonuclease RBBP8, 98.8 6.9E-10 2.4E-14 92.3 0.5 42 1-42 80-123 (123)
80 2rgt_A Fusion of LIM/homeobox 98.8 2E-09 6.7E-14 93.7 3.3 112 41-184 5-127 (169)
81 2co8_A NEDD9 interacting prote 98.8 4.6E-09 1.6E-13 80.9 4.5 61 41-114 14-75 (82)
82 2egq_A FHL1 protein; LIM domai 98.8 1.1E-09 3.8E-14 82.8 0.9 40 1-40 38-77 (77)
83 2iyb_E Testin, TESS, TES; LIM 98.8 1.5E-09 5E-14 79.9 1.4 40 1-40 22-64 (65)
84 1v6g_A Actin binding LIM prote 98.5 3.8E-08 1.3E-12 75.1 1.6 42 1-42 33-75 (81)
85 1zfo_A LAsp-1; LIM domain, zin 89.7 0.045 1.5E-06 34.1 -0.7 29 42-82 3-31 (31)
86 4ap4_A E3 ubiquitin ligase RNF 87.0 0.17 5.9E-06 40.4 0.9 105 8-127 6-122 (133)
87 1zfo_A LAsp-1; LIM domain, zin 79.9 0.88 3E-05 28.0 1.8 27 11-37 5-31 (31)
88 3vk6_A E3 ubiquitin-protein li 74.5 2.7 9.3E-05 33.3 3.7 44 11-54 3-49 (101)
89 1jm7_B BARD1, BRCA1-associated 73.5 2.6 9E-05 33.3 3.5 44 10-54 23-67 (117)
90 2jny_A Uncharacterized BCR; st 73.4 0.56 1.9E-05 34.5 -0.5 40 82-149 11-50 (67)
91 1bor_A Transcription factor PM 72.5 3.9 0.00013 28.0 3.8 44 10-55 7-50 (56)
92 2ysl_A Tripartite motif-contai 69.9 2 6.9E-05 30.6 1.9 47 8-55 19-70 (73)
93 2djb_A Polycomb group ring fin 69.2 1.7 5.8E-05 31.2 1.3 47 9-55 15-63 (72)
94 2ecy_A TNF receptor-associated 68.2 1.6 5.6E-05 30.7 1.0 47 8-55 14-63 (66)
95 1t1h_A Gspef-atpub14, armadill 65.8 2.6 9E-05 30.5 1.8 48 7-55 6-56 (78)
96 2hf1_A Tetraacyldisaccharide-1 65.6 1.3 4.5E-05 32.6 0.0 40 82-149 9-48 (68)
97 1z5h_A Tricorn protease intera 64.7 2.5 8.7E-05 44.5 2.1 41 226-266 259-301 (780)
98 2jr6_A UPF0434 protein NMA0874 64.6 1.5 5E-05 32.3 0.2 41 81-149 8-48 (68)
99 3oue_A Cytochrome C family pro 62.4 2.1 7.2E-05 36.5 0.8 108 11-126 29-157 (158)
100 2egp_A Tripartite motif-contai 62.3 4.1 0.00014 29.3 2.3 45 9-54 12-65 (79)
101 3cia_A Cold-active aminopeptid 62.3 2.8 9.7E-05 42.7 1.8 40 227-266 295-336 (605)
102 2ecv_A Tripartite motif-contai 61.8 3.5 0.00012 29.8 1.9 46 9-55 19-72 (85)
103 3cqb_A Probable protease HTPX 60.6 4.3 0.00015 31.8 2.3 20 221-240 78-97 (107)
104 4fke_A Aminopeptidase N; zinc 58.9 2.7 9.4E-05 45.0 1.1 40 227-266 317-358 (909)
105 3l11_A E3 ubiquitin-protein li 58.8 4.9 0.00017 31.4 2.3 30 10-40 16-45 (115)
106 2y43_A E3 ubiquitin-protein li 56.5 3 0.0001 31.7 0.7 45 10-54 23-69 (99)
107 2xq0_A LTA-4 hydrolase, leukot 56.2 3.4 0.00012 42.4 1.2 40 227-266 296-337 (632)
108 2d8t_A Dactylidin, ring finger 56.2 5.8 0.0002 28.1 2.2 46 8-54 14-61 (71)
109 4fgm_A Aminopeptidase N family 55.6 4.7 0.00016 41.3 2.1 42 225-266 266-320 (597)
110 4ayc_A E3 ubiquitin-protein li 55.4 5.8 0.0002 32.2 2.3 44 10-54 54-99 (138)
111 2ecm_A Ring finger and CHY zin 55.2 4.6 0.00016 26.8 1.4 46 9-54 5-55 (55)
112 2ysm_A Myeloid/lymphoid or mix 55.2 9.5 0.00032 29.9 3.5 11 102-112 93-103 (111)
113 2yur_A Retinoblastoma-binding 53.5 5.3 0.00018 28.7 1.6 45 9-54 15-64 (74)
114 2jne_A Hypothetical protein YF 53.2 7.6 0.00026 30.5 2.5 60 7-92 31-92 (101)
115 1jm7_A BRCA1, breast cancer ty 52.0 4.6 0.00016 31.1 1.1 43 10-53 22-69 (112)
116 2ecw_A Tripartite motif-contai 51.9 3.9 0.00014 29.6 0.6 46 9-55 19-72 (85)
117 1chc_A Equine herpes virus-1 r 51.8 6.7 0.00023 27.3 1.9 45 10-54 6-52 (68)
118 2csy_A Zinc finger protein 183 51.6 4.4 0.00015 29.6 0.9 45 9-54 15-61 (81)
119 2w15_A Zinc metalloproteinase 51.6 8.9 0.0003 33.2 3.0 25 214-238 124-148 (202)
120 2ect_A Ring finger protein 126 51.5 9.7 0.00033 27.3 2.7 46 82-127 16-61 (78)
121 2js4_A UPF0434 protein BB2007; 51.0 7.4 0.00025 28.6 2.0 41 81-149 8-48 (70)
122 1jjd_A Metallothionein, SMTA; 50.8 5.5 0.00019 28.1 1.2 29 11-39 9-38 (55)
123 1atl_A Atrolysin C; metalloend 50.4 9.4 0.00032 33.0 3.0 25 214-238 124-148 (202)
124 2ect_A Ring finger protein 126 49.5 12 0.00041 26.8 3.0 47 9-55 15-65 (78)
125 4ic3_A E3 ubiquitin-protein li 49.3 10 0.00035 27.3 2.6 42 10-54 25-67 (74)
126 2kre_A Ubiquitin conjugation f 49.1 8 0.00027 29.9 2.1 47 7-54 27-75 (100)
127 1qua_A Acutolysin-C, hemorrhag 48.5 11 0.00036 32.5 3.0 25 214-238 123-147 (197)
128 2ecn_A Ring finger protein 141 48.4 3.9 0.00013 28.9 0.1 45 9-55 15-61 (70)
129 2ckl_B Ubiquitin ligase protei 48.1 4.7 0.00016 33.7 0.6 44 10-53 55-101 (165)
130 2ckl_A Polycomb group ring fin 48.1 5.2 0.00018 30.9 0.8 45 9-54 15-62 (108)
131 2pk7_A Uncharacterized protein 48.0 8 0.00027 28.4 1.8 40 82-149 9-48 (69)
132 3c37_A Peptidase, M48 family; 47.9 6.1 0.00021 35.7 1.3 26 214-239 83-113 (253)
133 1iym_A EL5; ring-H2 finger, ub 47.3 18 0.00063 23.8 3.5 45 82-126 6-51 (55)
134 1bud_A Protein (acutolysin A); 47.3 11 0.00039 32.3 3.0 25 214-238 121-145 (197)
135 1kuf_A Atrolysin E, metallopro 47.1 11 0.00039 32.6 3.0 25 214-238 126-150 (203)
136 2gtq_A Aminopeptidase N; alani 46.9 4.8 0.00016 43.1 0.5 41 227-267 288-330 (867)
137 3u9w_A Leukotriene A-4 hydrola 46.7 4.5 0.00016 41.2 0.3 40 227-266 288-329 (608)
138 1wgm_A Ubiquitin conjugation f 46.3 8.7 0.0003 29.6 1.9 47 7-54 20-69 (98)
139 1yp1_A FII; FII hydrolase; 1.9 46.3 12 0.00041 32.4 3.0 25 214-238 123-147 (202)
140 3se6_A Endoplasmic reticulum a 46.3 5.8 0.0002 43.0 1.1 40 227-266 365-406 (967)
141 2ct2_A Tripartite motif protei 46.0 6 0.00021 28.9 0.8 47 9-55 15-69 (88)
142 1g25_A CDK-activating kinase a 46.0 4.9 0.00017 27.9 0.3 47 10-56 4-57 (65)
143 2i47_A ADAM 17; TACE-inhibitor 45.8 11 0.00039 34.4 2.9 20 219-238 179-200 (288)
144 1e4u_A Transcriptional repress 45.6 8.4 0.00029 28.5 1.6 47 9-55 11-63 (78)
145 2c2l_A CHIP, carboxy terminus 45.3 10 0.00035 33.7 2.4 48 7-55 206-256 (281)
146 3b34_A Aminopeptidase N; prote 45.2 6.3 0.00021 42.3 1.1 41 227-267 313-355 (891)
147 4dd8_A Disintegrin and metallo 44.8 13 0.00043 32.4 2.9 25 214-238 121-145 (208)
148 2kwj_A Zinc finger protein DPF 44.7 16 0.00055 28.9 3.3 11 102-112 97-107 (114)
149 2jsd_A Matrix metalloproteinas 44.1 8.1 0.00028 32.1 1.5 16 225-241 107-122 (160)
150 2kr4_A Ubiquitin conjugation f 44.0 8.9 0.0003 28.6 1.5 47 7-54 12-60 (85)
151 3dwb_A ECE-1, endothelin-conve 43.0 6.3 0.00022 40.7 0.7 15 225-239 500-514 (670)
152 3fl2_A E3 ubiquitin-protein li 41.8 7.1 0.00024 30.9 0.7 44 10-54 53-99 (124)
153 2e6s_A E3 ubiquitin-protein li 41.7 35 0.0012 25.2 4.5 63 28-111 8-75 (77)
154 3lrq_A E3 ubiquitin-protein li 41.5 6 0.00021 30.3 0.2 46 10-55 23-71 (100)
155 3ztg_A E3 ubiquitin-protein li 41.4 5.4 0.00019 29.7 -0.1 44 8-52 12-60 (92)
156 2xdt_A Endoplasmic reticulum a 41.3 6.9 0.00024 41.9 0.7 42 226-267 302-345 (897)
157 2ecg_A Baculoviral IAP repeat- 39.8 12 0.00041 26.9 1.6 43 10-55 26-69 (75)
158 2ovx_A Matrix metalloproteinas 38.7 11 0.00038 31.5 1.5 12 227-238 112-123 (159)
159 3zuk_A Endopeptidase, peptidas 38.5 8.2 0.00028 40.3 0.7 15 225-239 522-536 (699)
160 1z6u_A NP95-like ring finger p 38.4 9 0.00031 31.8 0.8 45 10-55 79-126 (150)
161 3dte_A IRRE protein; radiotole 38.3 21 0.0007 33.4 3.4 51 214-264 84-144 (301)
162 1rmd_A RAG1; V(D)J recombinati 38.1 10 0.00036 29.5 1.2 45 10-55 24-71 (116)
163 2ddf_A ADAM 17; hydrolase; HET 37.9 12 0.0004 33.6 1.6 20 219-238 173-194 (257)
164 3hcs_A TNF receptor-associated 37.8 11 0.00037 31.5 1.2 46 9-55 18-66 (170)
165 1r1h_A Neprilysin; enkephalina 37.8 8 0.00027 40.0 0.5 15 225-239 523-537 (696)
166 2ea6_A Ring finger protein 4; 37.8 5.4 0.00019 27.7 -0.5 47 8-54 14-68 (69)
167 2xeu_A Ring finger protein 4; 37.7 5.6 0.00019 27.1 -0.5 46 10-55 4-57 (64)
168 2dw0_A Catrocollastatin; apopt 37.3 18 0.00062 35.2 3.0 25 214-238 125-149 (419)
169 2ero_A VAP-1, vascular apoptos 37.0 18 0.00062 35.2 2.9 25 214-238 134-158 (427)
170 3ebh_A PFA-M1, M1 family amino 36.5 9 0.00031 41.2 0.6 41 227-267 296-338 (889)
171 3hct_A TNF receptor-associated 36.4 10 0.00034 29.8 0.8 46 9-55 18-66 (118)
172 2kiz_A E3 ubiquitin-protein li 36.1 14 0.00048 25.7 1.5 45 82-126 15-59 (69)
173 2ep4_A Ring finger protein 24; 35.6 13 0.00046 26.2 1.3 46 82-127 16-61 (74)
174 2xs4_A Karilysin protease; hyd 34.6 14 0.00048 30.9 1.5 15 226-241 115-129 (167)
175 3ov0_A Cytochrome C family pro 34.6 11 0.00039 35.3 1.0 108 10-125 188-316 (318)
176 3edh_A Bone morphogenetic prot 34.6 14 0.00047 32.4 1.5 13 226-238 87-99 (201)
177 1cge_A Fibroblast collagenase; 34.6 14 0.00048 31.1 1.5 15 226-241 111-125 (168)
178 2jrp_A Putative cytoplasmic pr 34.3 41 0.0014 25.4 3.8 58 10-92 3-62 (81)
179 3b4r_A Putative zinc metallopr 34.2 16 0.00055 32.5 1.9 22 224-245 46-68 (224)
180 1hy7_A Stromelysin-1, MMP-3; m 34.0 14 0.00049 31.1 1.5 15 226-241 113-127 (173)
181 2e3x_A Coagulation factor X-ac 33.6 24 0.00081 34.4 3.1 25 214-238 127-151 (427)
182 2ecj_A Tripartite motif-contai 33.3 15 0.00051 24.4 1.2 31 9-40 15-45 (58)
183 1t1h_A Gspef-atpub14, armadill 33.1 19 0.00066 25.6 1.8 46 80-128 7-53 (78)
184 2gvi_A Conserved hypothetical 32.7 12 0.00041 32.9 0.7 30 82-113 173-202 (204)
185 3ng2_A RNF4, snurf, ring finge 32.5 6.8 0.00023 27.4 -0.8 47 9-55 10-64 (71)
186 3knv_A TNF receptor-associated 32.4 5.3 0.00018 32.9 -1.6 45 9-54 31-78 (141)
187 1r55_A ADAM 33; metalloproteas 31.7 28 0.00096 30.3 3.0 15 224-238 134-148 (214)
188 2kpi_A Uncharacterized protein 31.5 18 0.00062 25.2 1.4 39 81-149 10-50 (56)
189 3lqb_A Hatching enzyme, LOC792 31.2 22 0.00074 31.2 2.2 15 224-238 91-105 (199)
190 4ger_A Gentlyase metalloprotea 31.2 18 0.00062 33.9 1.7 41 222-262 125-168 (304)
191 2rjp_A Adamts-4; metalloprotea 31.1 25 0.00084 32.6 2.7 15 224-238 141-155 (316)
192 2v4b_A Adamts-1; zymogen, prot 30.9 16 0.00055 33.5 1.3 15 224-238 141-155 (300)
193 2y43_A E3 ubiquitin-protein li 30.6 21 0.00071 26.8 1.7 45 82-128 23-67 (99)
194 3gor_A Putative metal-dependen 30.6 27 0.00094 27.6 2.6 31 224-254 122-157 (157)
195 2ckl_A Polycomb group ring fin 30.3 25 0.00087 26.8 2.2 45 82-128 16-60 (108)
196 1hv5_A Stromelysin 3; inhibiti 29.9 19 0.00064 30.2 1.5 13 226-238 113-125 (165)
197 1bqb_A Protein (aureolysin); h 29.9 20 0.00067 33.6 1.7 39 224-262 136-177 (301)
198 2l0b_A E3 ubiquitin-protein li 29.6 21 0.00071 26.6 1.5 45 82-126 41-85 (91)
199 2dmi_A Teashirt homolog 3; zin 28.5 20 0.00067 27.0 1.3 13 9-21 19-31 (115)
200 3b8z_A Protein adamts-5; alpha 28.4 29 0.00099 30.1 2.5 15 224-238 139-153 (217)
201 1i76_A MMP-8;, neutrophil coll 28.3 22 0.00074 29.8 1.6 13 226-238 112-124 (163)
202 2rjq_A Adamts-5; metalloprotea 28.2 29 0.001 32.9 2.7 15 224-238 141-155 (378)
203 3lq0_A Proastacin; metallopept 28.2 20 0.0007 32.2 1.5 14 225-238 119-132 (235)
204 2f42_A STIP1 homology and U-bo 27.4 18 0.00063 31.2 1.0 48 7-55 104-154 (179)
205 2ecn_A Ring finger protein 141 26.6 36 0.0012 23.5 2.3 44 81-128 15-58 (70)
206 1x4j_A Ring finger protein 38; 26.6 17 0.00058 25.8 0.5 46 80-125 22-67 (75)
207 2ct2_A Tripartite motif protei 26.5 23 0.0008 25.6 1.3 34 82-115 16-50 (88)
208 3ayu_A 72 kDa type IV collagen 26.3 24 0.00081 29.7 1.5 12 227-238 115-126 (167)
209 1u4g_A Elastase, pseudolysin; 26.3 23 0.00079 33.1 1.5 39 224-262 132-173 (301)
210 1slm_A Stromelysin-1; hydrolas 26.2 23 0.00079 32.1 1.5 13 226-238 195-207 (255)
211 4ayc_A E3 ubiquitin-protein li 26.1 32 0.0011 27.6 2.2 44 82-128 54-97 (138)
212 1weo_A Cellulose synthase, cat 25.7 7.9 0.00027 30.0 -1.5 16 39-54 13-28 (93)
213 1y93_A Macrophage metalloelast 25.4 25 0.00086 29.3 1.5 12 226-237 108-119 (159)
214 3k7n_A K-like; SVMP, hydrolase 25.3 41 0.0014 32.4 3.1 15 224-238 137-151 (397)
215 2ysj_A Tripartite motif-contai 24.6 15 0.0005 25.1 -0.1 31 9-40 20-50 (63)
216 3k7l_A Atragin; SVMP, metallop 24.5 40 0.0014 32.8 2.9 16 223-238 141-156 (422)
217 4aw6_A CAAX prenyl protease 1 24.4 30 0.001 34.5 2.0 21 219-239 322-342 (482)
218 3nxq_A Angiotensin-converting 24.2 43 0.0015 34.5 3.2 36 228-263 357-399 (629)
219 2yho_A E3 ubiquitin-protein li 23.9 33 0.0011 25.0 1.7 41 11-54 20-61 (79)
220 2eqg_A Tumor necrosis factor, 23.7 24 0.00084 23.6 0.8 21 94-114 18-38 (49)
221 2ea5_A Cell growth regulator w 23.4 38 0.0013 24.0 1.9 42 10-54 16-58 (68)
222 2d8v_A Zinc finger FYVE domain 23.0 19 0.00066 26.2 0.2 29 11-40 10-38 (67)
223 2y6d_A Matrilysin; hydrolase; 22.7 30 0.001 29.2 1.5 15 226-241 115-129 (174)
224 2qr4_A Peptidase M3B, oligoend 22.5 44 0.0015 33.6 2.8 34 226-259 363-399 (587)
225 2ko5_A Ring finger protein Z; 22.3 52 0.0018 25.7 2.6 47 78-128 25-71 (99)
226 3dnz_A Thermolysin; hydrolase, 22.1 42 0.0014 31.6 2.4 41 222-262 132-175 (316)
227 2vqx_A Metalloproteinase; ther 21.7 34 0.0012 32.5 1.7 40 224-263 154-196 (341)
228 3nqx_A MCP-02, secreted metall 21.1 36 0.0012 31.9 1.7 39 224-262 133-174 (306)
229 3ce2_A Putative peptidase; str 20.6 31 0.0011 35.0 1.3 14 225-238 395-408 (618)
230 2ckl_B Ubiquitin ligase protei 20.2 34 0.0012 28.2 1.3 45 82-128 55-100 (165)
231 2yu4_A E3 SUMO-protein ligase 20.1 24 0.00083 26.6 0.2 44 7-51 5-59 (94)
232 1rm8_A MMP-16, matrix metallop 20.1 37 0.0013 28.3 1.5 13 226-238 117-129 (169)
No 1
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.86 E-value=1.5e-22 Score=169.60 Aligned_cols=102 Identities=15% Similarity=0.418 Sum_probs=91.3
Q ss_pred CCCcccCCCeeecCCCCCCCC--CceeecCCccccccccccccCC--cCcccCCcccCCCCceEEEeeecccccccCCCC
Q 019740 1 MEAFWHPECFRCHSCNLPITD--VEFSMSGNRPYHKHCYKEQHHP--KCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSH 76 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~--~~F~~~dg~~yC~~CY~~~~~p--kC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H 76 (336)
+|+.||++||+|..|+++|.+ ..|+.+||++||+.||.++|++ +|..|+++|.+.+ .++.+.++.|
T Consensus 21 ~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e-~~~~a~~~~~--------- 90 (131)
T 2xjy_A 21 IDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYE-MTMRVKDKVY--------- 90 (131)
T ss_dssp TTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTS-EEEEETTEEE---------
T ss_pred CCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccc-eeEeeCCceE---------
Confidence 588999999999999999963 6899999999999999999999 9999999998752 4678888874
Q ss_pred cCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhc
Q 019740 77 ERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 114 (336)
Q Consensus 77 ~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~ 114 (336)
|+.||+|..|+++|+.+..|+.. ||++||..|+.++
T Consensus 91 -H~~CF~C~~C~~~L~~g~~f~~~-~~~~~C~~c~~~~ 126 (131)
T 2xjy_A 91 -HLECFKCAACQKHFCVGDRYLLI-NSDIVCEQDIYEW 126 (131)
T ss_dssp -EGGGCBCTTTCCBCCTTCEEEEE-TTEEEEGGGHHHH
T ss_pred -CccCcccCCCCCCCCCCCEEEEE-CCEEEcHHHHHHH
Confidence 99999999999999668888876 8999999999874
No 2
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.85 E-value=1.2e-22 Score=178.07 Aligned_cols=104 Identities=22% Similarity=0.558 Sum_probs=91.2
Q ss_pred CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCC
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDG 80 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~ 80 (336)
+|+.||++||+|..|+++|.+..| .+||++||+.||.++|+++|.+|+++|.+.+ .++.+.+..| |..
T Consensus 25 ~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~-~v~~a~~~~~----------H~~ 92 (169)
T 2rgt_A 25 LDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPPTQ-VVRRAQDFVY----------HLH 92 (169)
T ss_dssp SSCEECTTTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHSCBCTTTCCBCCTTS-EEEEETTEEE----------EGG
T ss_pred CCcEEccccCccCCCCCcCCCCCc-ccCCeeeecccccccccccccccccccCCCc-EEEEcCCceE----------eeC
Confidence 588999999999999999998765 7999999999999999999999999999753 3456777664 999
Q ss_pred CCccCCCCccCCCCCceEEcCCCceeccchhhhccc
Q 019740 81 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIM 116 (336)
Q Consensus 81 CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~ 116 (336)
||+|..|+++|..+..|+...||++||..|+.++..
T Consensus 93 CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~ 128 (169)
T 2rgt_A 93 CFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQ 128 (169)
T ss_dssp GCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHH
T ss_pred CCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhh
Confidence 999999999997677887777999999999988643
No 3
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.85 E-value=2.8e-22 Score=167.05 Aligned_cols=100 Identities=21% Similarity=0.522 Sum_probs=89.9
Q ss_pred CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcC--
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHER-- 78 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H-- 78 (336)
+|+.||++||+|..|+++|.+..|+++||++||+.||.++|+++|.+|+++|.+. +.+|++.++.| |
T Consensus 22 ~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~-~~~~~a~~~~~----------H~~ 90 (126)
T 2xqn_T 22 ENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPE-VQRVTYNNFSW----------HAS 90 (126)
T ss_dssp TTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTT-SCEEEETTEEE----------ESS
T ss_pred CCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcC-ceEEECCCCEe----------eCC
Confidence 5889999999999999999998999999999999999999999999999999974 24788888874 8
Q ss_pred CCCCccCCCCccCCCCCceEEcCCCceeccchhhh
Q 019740 79 DGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDS 113 (336)
Q Consensus 79 ~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~ 113 (336)
+.||+|..|+++|. +..|+.. ||++||..++.+
T Consensus 91 ~~CF~C~~C~~~l~-~~~f~~~-~~~~yC~~~~~~ 123 (126)
T 2xqn_T 91 TECFLCSCCSKCLI-GQKFMPV-EGMVFCSVECKK 123 (126)
T ss_dssp TTTSBCTTTCCBCT-TSEEEEE-TTEEESSHHHHH
T ss_pred CCCcCcCCCCCccC-CCeeEeE-CCEEcchHHhhh
Confidence 99999999999996 7888765 999999966655
No 4
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.85 E-value=5.3e-22 Score=175.84 Aligned_cols=102 Identities=23% Similarity=0.579 Sum_probs=89.8
Q ss_pred CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCC
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDG 80 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~ 80 (336)
+|+.||++||+|..|+++|.+..| .+||++||+.||.++|+++|..|+++|.+.+ .++.+.+..| |+.
T Consensus 79 ~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~-~v~~a~~~~~----------H~~ 146 (182)
T 2jtn_A 79 LDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPPTQ-VVRRAQDFVY----------HLH 146 (182)
T ss_dssp TTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTSCCCTTTCCCCCSSC-CCCEETTEEC----------CTT
T ss_pred cCCeEccccCccCCCCCccCCCce-eECCEeeecCccccccccccccCCCccCCCc-eEEecCCCCE----------EeC
Confidence 588999999999999999998765 7899999999999999999999999998753 3456777653 999
Q ss_pred CCccCCCCccCCCCCceEEcCCCceeccchhhhc
Q 019740 81 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 114 (336)
Q Consensus 81 CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~ 114 (336)
||+|..|+++|..+..|+...||++||..||.++
T Consensus 147 CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~ 180 (182)
T 2jtn_A 147 CFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 180 (182)
T ss_dssp TCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHH
T ss_pred CCcCCCCCCCCCCCCceEEccCCEEECHHHHHHh
Confidence 9999999999976778877779999999999874
No 5
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.84 E-value=9.1e-22 Score=175.76 Aligned_cols=111 Identities=20% Similarity=0.424 Sum_probs=97.3
Q ss_pred CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCc------------------------------------
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPK------------------------------------ 44 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pk------------------------------------ 44 (336)
+|+.||++||+|..|+++|.+..|+.+||++||+.||.++|+|+
T Consensus 26 ~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~ 105 (192)
T 1b8t_A 26 EGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNA 105 (192)
T ss_dssp TTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_pred CCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCCCcccccccccccccCCCCcCc
Confidence 58899999999999999999989999999999999999999886
Q ss_pred ------------CcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhh
Q 019740 45 ------------CDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLD 112 (336)
Q Consensus 45 ------------C~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~ 112 (336)
|..|+++|.+.. .|.+.++.| |..||+|..|+++|. +..|+.. ||++||..|+.
T Consensus 106 ~~~~~~~~~~~~C~~C~~~I~~~~--~v~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~g~~yC~~cy~ 171 (192)
T 1b8t_A 106 SRMAQKVGGSDGCPRCGQAVYAAE--KVIGAGKSW----------HKSCFRCAKCGKSLE-STTLADK-DGEIYCKGCYA 171 (192)
T ss_dssp CCCCCCCCCCEECTTTSCEECSSS--CEEETTEEE----------CTTTCBCTTTCCBCC-SSSEEEE-TTEEEEHHHHH
T ss_pred cccccccCCCCcCCCCCCEecCcE--EEecCCCcc----------chhcCCccccCCCCC-CCccccc-CCEEeCHHHHH
Confidence 778999998643 577888764 999999999999996 5678755 99999999999
Q ss_pred hcccCCCCCCchhhH
Q 019740 113 SAIMDTHECQPLYLE 127 (336)
Q Consensus 113 ~~v~~~~~C~~c~~~ 127 (336)
+ .+.++|..|.++
T Consensus 172 ~--~f~~kc~~C~~~ 184 (192)
T 1b8t_A 172 K--NFGPKGFGFGQG 184 (192)
T ss_dssp H--HTCCCCCCCCCC
T ss_pred H--hcCCcCCCCCCc
Confidence 8 678899888654
No 6
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.82 E-value=1.1e-21 Score=174.66 Aligned_cols=102 Identities=18% Similarity=0.470 Sum_probs=91.1
Q ss_pred CCCcccCCCeeecCCCCCCCC--CceeecCCccccccccccccCC--cCcccCCcccCCCCceEEEeeecccccccCCCC
Q 019740 1 MEAFWHPECFRCHSCNLPITD--VEFSMSGNRPYHKHCYKEQHHP--KCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSH 76 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~--~~F~~~dg~~yC~~CY~~~~~p--kC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H 76 (336)
+|+.||++||+|..|+++|.+ ..|+.+||++||+.||.++|++ +|..|+++|.+.+ .++.+.++.|
T Consensus 24 ~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e-~~i~a~~~~~--------- 93 (188)
T 1rut_X 24 MDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASE-LVMRAQGNVY--------- 93 (188)
T ss_dssp TTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTS-EEEEETTEEE---------
T ss_pred cCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCc-EEEEcCCCEE---------
Confidence 578999999999999999985 6899999999999999999999 7999999998752 4678888774
Q ss_pred cCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhc
Q 019740 77 ERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 114 (336)
Q Consensus 77 ~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~ 114 (336)
|+.||+|..|+++|..+..|+.. +|++||..|+.++
T Consensus 94 -H~~CF~C~~C~~~L~~g~~f~~~-~g~~yC~~c~~~~ 129 (188)
T 1rut_X 94 -HLKCFTCSTCRNRLVPGDRFHYI-NGSLFCEHDRPTA 129 (188)
T ss_dssp -CGGGCBCTTTCCBCCTTCEEEEE-TTEEEEGGGCCTT
T ss_pred -eCCCCeECCCCCCCCCCCeEEEE-CCeEECHHHHHHH
Confidence 99999999999999767788766 8999999999874
No 7
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.73 E-value=1.1e-18 Score=139.70 Aligned_cols=77 Identities=26% Similarity=0.592 Sum_probs=69.9
Q ss_pred CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCC
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDG 80 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~ 80 (336)
+|+.||++||+|..|+++|.+..|+.+||++||+.||.++|+++|..|+++|.+. +.+|.+.++.| |+.
T Consensus 25 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~-~~~~~a~~~~~----------H~~ 93 (101)
T 2cup_A 25 KNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAG-DQNVEYKGTVW----------HKD 93 (101)
T ss_dssp TTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCSS-SCEEESSSCEE----------ETT
T ss_pred CccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccccC-CeEEEeCCcch----------HHh
Confidence 5789999999999999999988899999999999999999999999999999853 23788888774 999
Q ss_pred CCccCCCC
Q 019740 81 TPRCCSCE 88 (336)
Q Consensus 81 CF~C~~C~ 88 (336)
||+|..|+
T Consensus 94 CF~C~~C~ 101 (101)
T 2cup_A 94 CFSGPSSG 101 (101)
T ss_dssp TCCCTTCC
T ss_pred CCCCCCCC
Confidence 99999996
No 8
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=2.6e-15 Score=115.14 Aligned_cols=78 Identities=19% Similarity=0.532 Sum_probs=68.1
Q ss_pred CCccccccccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceec
Q 019740 28 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC 107 (336)
Q Consensus 28 dg~~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC 107 (336)
+|++||++||.++++++|..|+++|.++ .|.+.++.| |..||+|..|+++|. +..|+.. ||++||
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~~I~~~---~v~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~~~~yC 65 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSKTLTQG---GVTYRDQPW----------HRECLVCTGCQTPLA-GQQFTSR-DEDPYC 65 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCCCCCSC---CEESSSSEE----------CTTTCBCSSSCCBCT-TCCEEEC-SSSEEE
T ss_pred CCcEEcHHHHccccCCcCCCCCCEecCc---EEEECCchh----------hhhhCCcccCCCcCC-CCeeEeE-CCEEEC
Confidence 5899999999999999999999999875 577777763 999999999999996 6778765 999999
Q ss_pred cchhhhcccCCCCCC
Q 019740 108 LECLDSAIMDTHECQ 122 (336)
Q Consensus 108 ~~C~~~~v~~~~~C~ 122 (336)
..|+.+ .+.+.|.
T Consensus 66 ~~cy~~--~f~~~c~ 78 (80)
T 2cuq_A 66 VACFGE--LFASGPS 78 (80)
T ss_dssp HHHHHH--HTTCSTT
T ss_pred HHHHHH--HcCCCCC
Confidence 999988 5777775
No 9
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=3.2e-15 Score=114.61 Aligned_cols=78 Identities=17% Similarity=0.279 Sum_probs=68.3
Q ss_pred CCccccccccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceec
Q 019740 28 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC 107 (336)
Q Consensus 28 dg~~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC 107 (336)
+|++||++||.++++++|..|+++|.++ .|.+.+..| |+.||+|..|+++|. +..|+.. ||++||
T Consensus 1 gg~~yC~~~y~~~~~~~C~~C~~~I~~~---~v~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~~~~yC 65 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSPKCGGCNRPVLEN---YLSAMDTVW----------HPECFVCGDCFTSFS-TGSFFEL-DGRPFC 65 (80)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSS---CEEETTEEE----------CTTTCBCSSSCCBSC-SSCCEES-SSCEEC
T ss_pred CCCccchhHHhhhcCCccccCCCeecce---eEEECCCeE----------ecCcCChhhCCCCCC-CCcEEeE-CCEEEC
Confidence 5789999999999999999999999975 688888764 999999999999996 5567765 999999
Q ss_pred cchhhhcccCCCCCC
Q 019740 108 LECLDSAIMDTHECQ 122 (336)
Q Consensus 108 ~~C~~~~v~~~~~C~ 122 (336)
..|+.+ .+.++|.
T Consensus 66 ~~~y~~--~f~~~C~ 78 (80)
T 1x3h_A 66 ELHYHH--RRGSGPS 78 (80)
T ss_dssp HHHHHH--HHSSSCC
T ss_pred HHHHHH--HcCCCCC
Confidence 999988 5677775
No 10
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=1.5e-16 Score=132.26 Aligned_cols=86 Identities=13% Similarity=0.204 Sum_probs=71.3
Q ss_pred CCCcccCCCeeecCCCCCCC--CCceeecCCccccccccccccCC--cCcccCCcccCCCCceEEEeeecccccccCCCC
Q 019740 1 MEAFWHPECFRCHSCNLPIT--DVEFSMSGNRPYHKHCYKEQHHP--KCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSH 76 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~--~~~F~~~dg~~yC~~CY~~~~~p--kC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H 76 (336)
+|+.||++||+|..|+++|. +..|+.+||++||+.||.++|++ +|..|+++|.+.. +++.+
T Consensus 24 ~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~---~~~~g------------ 88 (122)
T 1m3v_A 24 MDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGD---VMVVG------------ 88 (122)
T ss_dssp TTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEE---SSSSS------------
T ss_pred CCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchh---eEEcC------------
Confidence 57899999999999999997 36799999999999999999999 9999999999742 22222
Q ss_pred cCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhc
Q 019740 77 ERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 114 (336)
Q Consensus 77 ~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~ 114 (336)
...| .+++|+.. |+++||..|+.+.
T Consensus 89 -----------~~~l-~g~~f~~~-~~~~yC~~~~~~~ 113 (122)
T 1m3v_A 89 -----------EPTL-MGGEFGDE-DERLITRLENTQF 113 (122)
T ss_dssp -----------SSSC-CSCTTCCT-TCCCCEECTTTTT
T ss_pred -----------CcCC-CCCccEec-CCEeEccCcchhc
Confidence 1234 48888765 8999999999874
No 11
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.3e-15 Score=116.07 Aligned_cols=80 Identities=26% Similarity=0.569 Sum_probs=67.7
Q ss_pred CCccccccccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceec
Q 019740 28 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC 107 (336)
Q Consensus 28 dg~~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC 107 (336)
||+|||++||.++|+++|..|+++|.+. +.++.+.++.| |+.||+|..|+++|. +..|+.. +|++||
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~~-~~~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~f~~~-~~~~~C 67 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIGHD-SRELFYEDRHF----------HEGCFRCCRCQRSLA-DEPFTCQ-DSELLC 67 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSS-CCBCCCSSCCC----------BTTTSBCTTTCCBCS-SCCEEEE-TTEEEE
T ss_pred CCceechhHhCcccCCcCccCCCccccC-cEEEEeCCccc----------cccCCeecCCCCccC-CCccEee-CCEEEC
Confidence 6899999999999999999999999942 23666777653 999999999999996 7778766 999999
Q ss_pred cchhhhcccCCCCCC
Q 019740 108 LECLDSAIMDTHECQ 122 (336)
Q Consensus 108 ~~C~~~~v~~~~~C~ 122 (336)
..|+.+ .+.++|.
T Consensus 68 ~~c~~~--~~~~~C~ 80 (82)
T 2ehe_A 68 NDCYCS--AFSSGPS 80 (82)
T ss_dssp TTTSSC--CGGGSSC
T ss_pred HHHHhh--hcCCCCC
Confidence 999988 5666775
No 12
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=5e-15 Score=112.71 Aligned_cols=73 Identities=21% Similarity=0.500 Sum_probs=63.7
Q ss_pred CCccccccccccccCCcCcccCCcccC---CCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCc
Q 019740 28 GNRPYHKHCYKEQHHPKCDVCQNFIPT---NSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGR 104 (336)
Q Consensus 28 dg~~yC~~CY~~~~~pkC~~C~~~I~~---~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~ 104 (336)
+++|||++||.++++++|..|+++|.+ . ..++.+.++.| |+.||+|..|+++|. +..|+.. +|+
T Consensus 1 g~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~-~~~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~f~~~-~~~ 67 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAKKCAGCKNPITGFGKG-SSVVAYEGQSW----------HDYCFHCKKCSVNLA-NKRFVFH-QEQ 67 (77)
T ss_dssp CCSSCCTTCCCSCCCCCCSSSCCCCCCCSSC-CCEEEETTEEE----------ETTTCBCSSSCCBCT-TSCCCEE-TTE
T ss_pred CCCeEchhHhchhhCccCcccCCcccCCCCC-ceeEEECccee----------CcccCEehhcCCCCC-CCccEeE-CCE
Confidence 578999999999999999999999996 2 23788888764 999999999999996 6778765 999
Q ss_pred eeccchhhh
Q 019740 105 KLCLECLDS 113 (336)
Q Consensus 105 ~yC~~C~~~ 113 (336)
+||..|+.+
T Consensus 68 ~yC~~cy~~ 76 (77)
T 2egq_A 68 VYCPDCAKK 76 (77)
T ss_dssp ECCHHHHHH
T ss_pred EEChHHhcc
Confidence 999999875
No 13
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=7.7e-15 Score=112.93 Aligned_cols=78 Identities=15% Similarity=0.303 Sum_probs=67.7
Q ss_pred CCccccccccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceec
Q 019740 28 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC 107 (336)
Q Consensus 28 dg~~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC 107 (336)
||++||++||. ++.++|..|+++|.+. +|.+.++.| |+.||+|..|+++|. +..|+...||++||
T Consensus 2 ~g~~yC~~~y~-~~~~~C~~C~~~I~~~---~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~f~~~~~g~~yC 66 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEKCATCSQPILDR---ILRAMGKAY----------HPGCFTCVVCHRGLD-GIPFTVDATSQIHC 66 (81)
T ss_dssp CCCCCCCCCCC-SSCCBCTTTCCBCCSC---CEEETTEEE----------CTTTCBCSSSCCBCT-TSCEECCTTCCCEE
T ss_pred cCCEECHHHhh-cCCCccccCCCeecce---eEEECCccc----------cHHhcCcccCCCccC-CCeeEECCCCEEEC
Confidence 68999999999 7999999999999964 688888764 999999999999996 67776544789999
Q ss_pred cchhhhcccCCCCCC
Q 019740 108 LECLDSAIMDTHECQ 122 (336)
Q Consensus 108 ~~C~~~~v~~~~~C~ 122 (336)
..||.+ .+.++|.
T Consensus 67 ~~cy~~--~f~~~C~ 79 (81)
T 2dlo_A 67 IEDFHR--KFASGPS 79 (81)
T ss_dssp HHHHHH--HTTSSSC
T ss_pred HHHHHH--HhcCcCC
Confidence 999988 6778886
No 14
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=5.4e-15 Score=113.71 Aligned_cols=74 Identities=14% Similarity=0.298 Sum_probs=63.4
Q ss_pred CCccccccccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceec
Q 019740 28 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC 107 (336)
Q Consensus 28 dg~~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC 107 (336)
++.+||+.||.++|+++|..|+++|.+. .|.+.++.| |+.||+|..|+++|..+..|+...+|++||
T Consensus 1 g~~~yC~~~y~~~~~~~C~~C~~~I~~~---~~~a~~~~~----------H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C 67 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFGEFCHGCSLLMTGP---FMVAGEFKY----------HPECFACMSCKVIIEDGDAYALVQHATLYC 67 (81)
T ss_dssp CCCCCCCCCSSCCSSCBCTTTCCBCCSC---CBCCTTCCB----------CTTSCBCTTTCCBCCTTSCEEECSSSCEEE
T ss_pred CCCccchhHHhhhcCCcCccCCCCcCce---EEEECCcee----------ccccCCccCCCCccCCCCcEEEeeCCEEEC
Confidence 4689999999999999999999999954 577777663 999999999999996567775335999999
Q ss_pred cchhhhc
Q 019740 108 LECLDSA 114 (336)
Q Consensus 108 ~~C~~~~ 114 (336)
..|+.++
T Consensus 68 ~~c~~~~ 74 (81)
T 1x6a_A 68 GKCHNEV 74 (81)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999873
No 15
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=2e-14 Score=110.57 Aligned_cols=80 Identities=16% Similarity=0.416 Sum_probs=67.0
Q ss_pred CCccccccccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceec
Q 019740 28 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC 107 (336)
Q Consensus 28 dg~~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC 107 (336)
++.+||++||.++++++|..|+++|.+.+ .+|.+.++.| |+.||+|..|+++|. +..|+.. +|++||
T Consensus 1 ~~~~yC~~cy~~~~~~~C~~C~~~I~~~~-~~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~~~~yC 67 (82)
T 1x63_A 1 GSSGSSGKCTTREDSPKCKGCFKAIVAGD-QNVEYKGTVW----------HKDCFTCSNCKQVIG-TGSFFPK-GEDFYC 67 (82)
T ss_dssp CCSCCCCCCCSCCCSCBCSSSCCBCCSSS-CEEECSSCEE----------ETTTCCCSSSCCCCT-TSCEEEE-TTEEEE
T ss_pred CCCcCchhHHccccCCcCccCCcccccCc-eEEEECcccc----------ccccCchhhCCCccC-CCccEee-CCEEEC
Confidence 47899999999999999999999998542 3677888763 999999999999996 5578765 999999
Q ss_pred cchhhhcccCCCCCC
Q 019740 108 LECLDSAIMDTHECQ 122 (336)
Q Consensus 108 ~~C~~~~v~~~~~C~ 122 (336)
..|+.+ .+.++|.
T Consensus 68 ~~cy~~--~f~~~~~ 80 (82)
T 1x63_A 68 VTCHET--KFASGPS 80 (82)
T ss_dssp HHHHHH--HTSCCCS
T ss_pred HHHHHH--HhCCCCC
Confidence 999988 4555553
No 16
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.44 E-value=2.6e-14 Score=117.20 Aligned_cols=82 Identities=11% Similarity=0.234 Sum_probs=66.8
Q ss_pred CCCcccCCCeeecCCCCCCCC--CceeecCCccccccccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcC
Q 019740 1 MEAFWHPECFRCHSCNLPITD--VEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHER 78 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~--~~F~~~dg~~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H 78 (336)
+|+.||++||+|..|+++|.+ ..|+.+||++||+.||.++|+++|..|.. +. +| +
T Consensus 22 ~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~~---~~---~~-----------------~ 78 (114)
T 1j2o_A 22 IDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSG---GD---VM-----------------V 78 (114)
T ss_dssp SSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCBS---CS---CC-----------------C
T ss_pred CchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCCC---Cc---ee-----------------E
Confidence 588999999999999999985 68999999999999999999999998862 11 11 1
Q ss_pred CCCCccCCCCccCCCCCceEEcCCCceeccchhhhc
Q 019740 79 DGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 114 (336)
Q Consensus 79 ~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~ 114 (336)
|++.+..+++|+.. |+++||..|+.+.
T Consensus 79 --------~~~~~~~g~~f~~~-~~~~~C~~~~~~~ 105 (114)
T 1j2o_A 79 --------VGEPTLMGGEFGDE-DERLITRLENTQF 105 (114)
T ss_dssp --------SSCSSTTSSBCCCS-SSCCCEEEECTTC
T ss_pred --------cCCccCCCCeeEEc-CCEeecchhhhcc
Confidence 33444458888655 8999999998874
No 17
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=1.5e-13 Score=105.64 Aligned_cols=72 Identities=14% Similarity=0.329 Sum_probs=60.9
Q ss_pred CccccccccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceecc
Q 019740 29 NRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCL 108 (336)
Q Consensus 29 g~~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~ 108 (336)
+.+||+.||.++|+++|..|+++|.++ +|.+.++.| |+.||+|..|+++|.. ..++..+++.+||.
T Consensus 2 ~~~yC~~dy~~~~~~~C~~C~~~I~~~---~v~a~~~~w----------H~~CF~C~~C~~~L~~-~~~~~~~~~~~~C~ 67 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCFSCDQFIEGE---VVSALGKTY----------HPDCFVCAVCRLPFPP-GDRVTFNGKECMCQ 67 (81)
T ss_dssp CCCCCCSCGGGSCCCBCTTTCCBCCSC---CEEETTEEE----------CTTTSSCSSSCCCCCS-SSCEEEETTEEEEH
T ss_pred CCCcchHHHHhHhCCcCccccCEeccc---eEEECCcee----------CccCCccccCCCCCCC-CCEEEeCCCCEECh
Confidence 579999999999999999999999964 688888874 9999999999999964 44556645557999
Q ss_pred chhhhc
Q 019740 109 ECLDSA 114 (336)
Q Consensus 109 ~C~~~~ 114 (336)
.|+.++
T Consensus 68 ~C~~~~ 73 (81)
T 1v6g_A 68 KCSLPV 73 (81)
T ss_dssp HHHSCC
T ss_pred hhhccc
Confidence 999875
No 18
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.33 E-value=6e-14 Score=116.41 Aligned_cols=112 Identities=16% Similarity=0.276 Sum_probs=83.2
Q ss_pred ccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhcccCCC
Q 019740 40 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH 119 (336)
Q Consensus 40 ~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~ 119 (336)
+++++|..|+++|.+.. ++.+.++.| |+.||+|..|+++|. +..|+.. ||++||..||.+ .+.+
T Consensus 1 ~~~~~C~~C~~~I~~~~--~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~f~~~-~g~~yC~~cy~~--~~~~ 64 (126)
T 2xqn_T 1 SEKPRCAGCDELIFSNE--YTQAENQNW----------HLKHFCCFDCDSILA-GEIYVMV-NDKPVCKPCYVK--NHAV 64 (126)
T ss_dssp -CCCBBTTTSSBCCSSC--EEEETTEEE----------CGGGSBCTTTCCBCT-TSEEEEE-TTEEEEHHHHHH--HSCC
T ss_pred CcCCCCccCCCEeCCce--EEeeCCCCc----------cCCCCCcCCCCCCCC-cCEEEeE-CCEEechHHhCc--CcCc
Confidence 36899999999999643 788888874 999999999999996 7788765 999999999998 6889
Q ss_pred CCCchhhHHHHHHhhccceeccccccchhcHHHHHHhhc--CcC---------CCCCCCCCcCCccccccceec
Q 019740 120 ECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAME--GEK---------NGHHHLPETRGLCLSEEQTVT 182 (336)
Q Consensus 120 ~C~~c~~~I~~f~~glg~~i~~~~p~~lV~~~ALn~a~~--~e~---------~g~~h~~~~rGl~~~E~~~~~ 182 (336)
+|..|.++|.. .... +.|+++.|| .+- ..+..+...+|..||+.++..
T Consensus 65 ~C~~C~~~I~~---------~~~~------~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~ 123 (126)
T 2xqn_T 65 VCQGCHNAIDP---------EVQR------VTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKK 123 (126)
T ss_dssp BCTTTCSBCCT---------TSCE------EEETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHHH
T ss_pred cCcccCCcCCc---------CceE------EECCCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHhhh
Confidence 99999887741 0111 336677777 321 123334567888888776653
No 19
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.28 E-value=9.5e-13 Score=99.91 Aligned_cols=53 Identities=23% Similarity=0.511 Sum_probs=49.6
Q ss_pred CCCcccCCCeeecCCCCCCCCCceeecCCccccc-cccccccCCcCcccCCccc
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHK-HCYKEQHHPKCDVCQNFIP 53 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~-~CY~~~~~pkC~~C~~~I~ 53 (336)
+|+.||++||+|..|+++|.+..|+.+||++||+ .||.++|+++|..|++.+.
T Consensus 19 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 19 LGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAES 72 (76)
T ss_dssp TTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSSS
T ss_pred CCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCcee
Confidence 5789999999999999999988999999999999 6999999999999997765
No 20
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.24 E-value=2.4e-12 Score=97.78 Aligned_cols=49 Identities=18% Similarity=0.542 Sum_probs=46.5
Q ss_pred CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcccC
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQ 49 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~C~ 49 (336)
+|+.||++||+|..|+++|.+..|+.+|+++||+.||.++|+++|..+.
T Consensus 27 ~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 27 QDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp TTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSC
T ss_pred CCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCC
Confidence 5789999999999999999998999999999999999999999999875
No 21
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.22 E-value=1.3e-12 Score=100.41 Aligned_cols=52 Identities=21% Similarity=0.390 Sum_probs=40.3
Q ss_pred CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcccCCcc
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFI 52 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~C~~~I 52 (336)
+|+.||++||+|..|+++|.+..|+.+++++||+.||.++|+++|..|++..
T Consensus 26 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g~ 77 (81)
T 1a7i_A 26 DGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGA 77 (81)
T ss_dssp TTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC----------
T ss_pred CCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCCcc
Confidence 5789999999999999999998899999999999999999999999998764
No 22
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.22 E-value=1.8e-12 Score=107.46 Aligned_cols=106 Identities=10% Similarity=0.040 Sum_probs=80.5
Q ss_pred ccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCC-CCCceEEcCCCceeccchhhhcccCC
Q 019740 40 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEP-RDTKYLSLDDGRKLCLECLDSAIMDT 118 (336)
Q Consensus 40 ~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~-~~~~f~~~~dG~~yC~~C~~~~v~~~ 118 (336)
++.++|..|+++|.+.. ++.+.++.| |+.||+|..|+++|. .+..|+.. ||++||..||.+ .+.
T Consensus 3 ~~~~~C~~C~~~I~~~~--~~~a~~~~w----------H~~CF~C~~C~~~L~~~~~~~~~~-~g~~yC~~cy~~--~f~ 67 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRF--LLYAMDSYW----------HSRCLKCSSCQAQLGDIGTSSYTK-SGMILCRNDYIR--LFG 67 (122)
T ss_dssp SCCCCBSSSSSCCCSSC--CEEETTEEE----------CHHHHCCSSSCCCTTTSEECCEEE-TTEEECHHHHHH--HHC
T ss_pred CCCCCCcccCCEeCCcE--EEEECCcee----------HhhCCCcCCCCCcccccCCeEEEE-CCeeecHHHHHH--HcC
Confidence 57899999999999763 578888763 999999999999995 24568766 999999999998 456
Q ss_pred C--CCCchhhHHHHHHhhccceeccccccchhcHHHHHHhhcCcCCCCCCCCCcCCcccccccee
Q 019740 119 H--ECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTV 181 (336)
Q Consensus 119 ~--~C~~c~~~I~~f~~glg~~i~~~~p~~lV~~~ALn~a~~~e~~g~~h~~~~rGl~~~E~~~~ 181 (336)
+ .|..|.++|.. .. +.+++ .....+..|...+|.+||..++.
T Consensus 68 ~~~~C~~C~~~I~~-----------~~------~~~~g----~~~l~g~~f~~~~~~~yC~~~~~ 111 (122)
T 1m3v_A 68 NSGAGGSGGHMGSG-----------GD------VMVVG----EPTLMGGEFGDEDERLITRLENT 111 (122)
T ss_dssp CCCSSSCSSCCSCC-----------EE------SSSSS----SSSCCSCTTCCTTCCCCEECTTT
T ss_pred CCCccccCCCCcCc-----------hh------eEEcC----CcCCCCCccEecCCEeEccCcch
Confidence 6 99999887752 10 01222 12334556789999999988875
No 23
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.21 E-value=1.2e-11 Score=93.86 Aligned_cols=71 Identities=20% Similarity=0.400 Sum_probs=60.3
Q ss_pred cccCCcCcccCCcccC--CCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhccc
Q 019740 39 EQHHPKCDVCQNFIPT--NSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIM 116 (336)
Q Consensus 39 ~~~~pkC~~C~~~I~~--~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~ 116 (336)
++|+++|..|+++|.+ . ..+|.+.++.| |+.||+|..|+++|. +..|+.. ||++||..||.+ .
T Consensus 2 ~~~~~~C~~C~~~I~~~g~-~~~~~a~~~~w----------H~~CF~C~~C~~~L~-~~~f~~~-~g~~yC~~cy~~--~ 66 (76)
T 1x68_A 2 SSGSSGCVACSKPISGLTG-AKFICFQDSQW----------HSECFNCGKCSVSLV-GKGFLTQ-NKEIFCQKCGSG--M 66 (76)
T ss_dssp TTCCCCCTTTCCCCCTTTT-CCEEEETTEEE----------EGGGCBCTTTCCBCS-SSCEEEE-TTEEEETTTTCC--C
T ss_pred CccCCCCccCCCcccCCCC-ceeEEECCccc----------CcccCChhhCCCcCC-CCceEeE-CCEEECHHHhhh--h
Confidence 4689999999999996 2 23788888763 999999999999996 7778765 999999999998 6
Q ss_pred CCCCCCch
Q 019740 117 DTHECQPL 124 (336)
Q Consensus 117 ~~~~C~~c 124 (336)
+.++|.++
T Consensus 67 f~~~C~~~ 74 (76)
T 1x68_A 67 DTDISGPS 74 (76)
T ss_dssp CCCSSSSS
T ss_pred hCCcCCCC
Confidence 88888865
No 24
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.18 E-value=3.9e-12 Score=112.24 Aligned_cols=122 Identities=15% Similarity=0.203 Sum_probs=87.7
Q ss_pred CCccccccccc---cccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCc
Q 019740 28 GNRPYHKHCYK---EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGR 104 (336)
Q Consensus 28 dg~~yC~~CY~---~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~ 104 (336)
+++.||...+. ....++|..|+++|.+.. ++.+.++. | |+.||+|..|+++|. +..| .. ||+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~--~~~a~~~~-w---------H~~CF~C~~C~~~L~-~~~f-~~-~g~ 107 (182)
T 2jtn_A 43 DDEGGSGGHMGSGGTPEIPMCAGCDQHILDRF--ILKALDRH-W---------HSKCLKCSDCHVPLA-ERCF-SR-GES 107 (182)
T ss_dssp SSSCSSSSSCCCCCCCSCCBCBTSSSBCCCSE--EEEETTEE-E---------CSSTTSCTTTCCCCS-SCCE-EE-TTE
T ss_pred ccccccccccccCCCCCCCcCccCCCCccCce--eEEecCCe-E---------ccccCccCCCCCccC-CCce-eE-CCE
Confidence 45678887775 556789999999999752 57788876 3 999999999999996 5555 44 999
Q ss_pred eeccchhhhcccCCCCCCchhhHHHHHHhhccceeccccccchhcHHHHHHhhcCcC----------C-CCCCCCCcCCc
Q 019740 105 KLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEK----------N-GHHHLPETRGL 173 (336)
Q Consensus 105 ~yC~~C~~~~v~~~~~C~~c~~~I~~f~~glg~~i~~~~p~~lV~~~ALn~a~~~e~----------~-g~~h~~~~rGl 173 (336)
+||..||.+ .+.++|..|.++|.. .+. | +.|+++.||.+. . |...+...+|.
T Consensus 108 ~yC~~~y~~--~f~~kC~~C~~~I~~----------~~~----v-~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~ 170 (182)
T 2jtn_A 108 VYCKDDFFK--RFGTKCAACQLGIPP----------TQV----V-RRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSR 170 (182)
T ss_dssp EECHHHHHH--TTSCCCTTTCCCCCS----------SCC----C-CEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSC
T ss_pred eeecCcccc--ccccccccCCCccCC----------Cce----E-EecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCE
Confidence 999999998 688999999877631 010 0 236777776541 1 22223356788
Q ss_pred ccccccee
Q 019740 174 CLSEEQTV 181 (336)
Q Consensus 174 ~~~E~~~~ 181 (336)
.||+.+|.
T Consensus 171 ~yC~~cy~ 178 (182)
T 2jtn_A 171 LVCKADYE 178 (182)
T ss_dssp EECHHHHH
T ss_pred EECHHHHH
Confidence 88877664
No 25
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.18 E-value=4.4e-12 Score=94.49 Aligned_cols=47 Identities=23% Similarity=0.588 Sum_probs=44.4
Q ss_pred CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcc
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 47 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~ 47 (336)
+|+.||++||+|..|+++|.+..|+.+|+++||+.||.++|+|+|..
T Consensus 23 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 23 REQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp SSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCTT
T ss_pred CccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccCC
Confidence 57899999999999999999989999999999999999999999963
No 26
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.17 E-value=5.3e-12 Score=98.98 Aligned_cols=47 Identities=23% Similarity=0.549 Sum_probs=44.5
Q ss_pred CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcc
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 47 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~ 47 (336)
+|+.||++||+|..|+++|.+..|+.+++++||+.||.++|+|+|..
T Consensus 43 ~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~s 89 (90)
T 2dar_A 43 LGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPSS 89 (90)
T ss_dssp TTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCCC
T ss_pred CCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCCC
Confidence 57899999999999999999989999999999999999999999963
No 27
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.16 E-value=4.8e-12 Score=94.14 Aligned_cols=47 Identities=23% Similarity=0.610 Sum_probs=44.4
Q ss_pred CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcc
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 47 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~ 47 (336)
+|+.||++||+|..|+++|.+..|+++++++||+.||.++|+++|..
T Consensus 23 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 23 QDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp TTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCCC
T ss_pred CccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCCC
Confidence 57899999999999999999889999999999999999999999973
No 28
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.16 E-value=7.1e-12 Score=93.78 Aligned_cols=47 Identities=23% Similarity=0.591 Sum_probs=44.4
Q ss_pred CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcc
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 47 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~ 47 (336)
+|+.||++||+|..|+++|.+..|+.+++++||+.||.++|+|+|+.
T Consensus 25 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1wyh_A 25 GGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPSS 71 (72)
T ss_dssp TTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCCC
T ss_pred CccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCCC
Confidence 57899999999999999999989999999999999999999999963
No 29
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.16 E-value=4.8e-11 Score=93.50 Aligned_cols=75 Identities=13% Similarity=0.313 Sum_probs=62.3
Q ss_pred cccccccccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccch
Q 019740 31 PYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLEC 110 (336)
Q Consensus 31 ~yC~~CY~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C 110 (336)
+.+...+...+.++|..|+++|.++ .|.+.++.| |+.||+|..|+++|. +..|+.. +|++||..|
T Consensus 14 ~~~~~~~~~~~~~~C~~C~~~I~~~---~v~a~~~~~----------H~~CF~C~~C~~~L~-~~~f~~~-~g~~yC~~c 78 (90)
T 2dar_A 14 QRAEHIPAGKRTPMCAHCNQVIRGP---FLVALGKSW----------HPEEFNCAHCKNTMA-YIGFVEE-KGALYCELC 78 (90)
T ss_dssp BCCEEECTTTCCCBBSSSCCBCCSC---EEEETTEEE----------CTTTCBCSSSCCBCS-SSCBEES-SSCEECHHH
T ss_pred hhcccCCCCCCCCCCccCCCEecce---EEEECCccc----------cccCCccCCCCCCCC-CCEeEeE-CCEEECHHH
Confidence 4445557778999999999999764 688888774 999999999999996 6678754 999999999
Q ss_pred hhhcccCCCCCC
Q 019740 111 LDSAIMDTHECQ 122 (336)
Q Consensus 111 ~~~~v~~~~~C~ 122 (336)
|.+ .+.++|.
T Consensus 79 y~~--~f~~~c~ 88 (90)
T 2dar_A 79 YEK--FFASGPS 88 (90)
T ss_dssp HHH--HTSCCCC
T ss_pred HHH--HcCCCCC
Confidence 998 6777775
No 30
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.6e-11 Score=94.25 Aligned_cols=47 Identities=21% Similarity=0.542 Sum_probs=44.6
Q ss_pred CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcc
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 47 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~ 47 (336)
+|+.||++||+|..|+++|.+..|+.+++++||+.||.++|+++|.+
T Consensus 35 ~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~~ 81 (82)
T 2ehe_A 35 EDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPSS 81 (82)
T ss_dssp SSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSCC
T ss_pred CCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCCC
Confidence 57899999999999999999989999999999999999999999974
No 31
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.14 E-value=1.2e-11 Score=92.82 Aligned_cols=46 Identities=26% Similarity=0.634 Sum_probs=43.2
Q ss_pred CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCc
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD 46 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~ 46 (336)
+|+.||++||+|..|+++|.+..|+.+++++||+.||.++|+|++.
T Consensus 27 ~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~g 72 (72)
T 1x4l_A 27 EERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSSG 72 (72)
T ss_dssp SSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSCC
T ss_pred CCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCCC
Confidence 5789999999999999999999999999999999999999999863
No 32
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.14 E-value=7.2e-12 Score=93.74 Aligned_cols=47 Identities=32% Similarity=0.726 Sum_probs=44.4
Q ss_pred CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcc
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 47 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~ 47 (336)
+|+.||++||+|..|+++|.+..|+.+|+++||+.||.++|+|+|+.
T Consensus 25 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 25 KGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPSS 71 (72)
T ss_dssp TTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCCC
T ss_pred CcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCCC
Confidence 57899999999999999999989999999999999999999999973
No 33
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.14 E-value=9.2e-12 Score=95.90 Aligned_cols=46 Identities=26% Similarity=0.687 Sum_probs=42.9
Q ss_pred CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcc
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 47 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~ 47 (336)
+|+.||++||+|..|+++|.+ .|+.+|+++||+.||.++|+++|..
T Consensus 34 ~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 34 LDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp TTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCSTT
T ss_pred CCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCCC
Confidence 578999999999999999986 6999999999999999999999974
No 34
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.13 E-value=5.5e-11 Score=88.88 Aligned_cols=69 Identities=14% Similarity=0.456 Sum_probs=57.8
Q ss_pred cccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhcccCC
Q 019740 39 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDT 118 (336)
Q Consensus 39 ~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~ 118 (336)
++|+++|..|+++|.+.+ .+|.+.++.| |+.||+|..|+++|. +..|+.. ||++||..||.+ .+.
T Consensus 2 ~~~~~~C~~C~~~I~~~~-~~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~~~~yC~~cy~~--~f~ 66 (72)
T 1x4k_A 2 SSGSSGCQECKKTIMPGT-RKMEYKGSSW----------HETCFICHRCQQPIG-TKSFIPK-DNQNFCVPCYEK--QHA 66 (72)
T ss_dssp CSCCCCBSSSCCCCCSSS-CEEEETTEEE----------ETTTTCCSSSCCCCC-SSSEEEE-TTEEEEHHHHHH--HTS
T ss_pred CccCCCCccCCCcccCCc-eEEEECcCee----------cccCCcccccCCccC-CCccCcc-CCeEECHHHHhH--HhC
Confidence 468999999999999642 3788888764 999999999999996 5678765 999999999988 577
Q ss_pred CCCC
Q 019740 119 HECQ 122 (336)
Q Consensus 119 ~~C~ 122 (336)
+.|.
T Consensus 67 ~~C~ 70 (72)
T 1x4k_A 67 SGPS 70 (72)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7775
No 35
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.13 E-value=4.8e-11 Score=88.67 Aligned_cols=66 Identities=15% Similarity=0.502 Sum_probs=56.0
Q ss_pred ccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhcccCCC
Q 019740 40 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH 119 (336)
Q Consensus 40 ~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~ 119 (336)
+++++|..|+++|.++ .|.+.++.| |..||+|..|+++|. +..|+.. ||++||..||.+ .+.+
T Consensus 3 ~~~~~C~~C~~~I~~~---~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~~~~yC~~cy~~--~f~~ 65 (69)
T 2cur_A 3 SGSSGCVKCNKAITSG---GITYQDQPW----------HADCFVCVTCSKKLA-GQRFTAV-EDQYYCVDCYKN--FVSG 65 (69)
T ss_dssp CCCCCCSSSCCCCCTT---CEEETTEEE----------CTTTTBCTTTCCBCT-TSCEEEC-SSCEEEHHHHHH--HHTC
T ss_pred CCcCCCcccCCEeCcc---eEEECcccc----------ccCcCEECCCCCCCC-CCccEeE-CCEEECHHHhHH--HhcC
Confidence 5789999999999865 578888764 999999999999996 7778765 899999999988 5667
Q ss_pred CCC
Q 019740 120 ECQ 122 (336)
Q Consensus 120 ~C~ 122 (336)
.|.
T Consensus 66 ~C~ 68 (69)
T 2cur_A 66 PSS 68 (69)
T ss_dssp SCC
T ss_pred CCC
Confidence 765
No 36
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.13 E-value=1.1e-11 Score=93.88 Aligned_cols=47 Identities=19% Similarity=0.539 Sum_probs=44.1
Q ss_pred CCCcccCCCeeecCCCCCCCCCceeecCCccccc-cccccccCCcCcc
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHK-HCYKEQHHPKCDV 47 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~-~CY~~~~~pkC~~ 47 (336)
+|+.||++||+|..|+++|.+..|+.+|+++||+ .||.++|+|+|..
T Consensus 28 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 28 LGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp TTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCSC
T ss_pred CCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccCC
Confidence 5789999999999999999998899999999999 7999999999963
No 37
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.13 E-value=4e-11 Score=95.45 Aligned_cols=75 Identities=20% Similarity=0.487 Sum_probs=63.4
Q ss_pred ccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhcccCCC
Q 019740 40 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH 119 (336)
Q Consensus 40 ~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~ 119 (336)
++.++|..|+++|... +.++.+.++.| |..||+|..|+++|. +..|+.. ||++||..||.+ .+.+
T Consensus 3 ~~~~~C~~C~~~I~~~-~~~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~g~~yC~~cy~~--~~~~ 67 (101)
T 2cup_A 3 SGSSGCVECRKPIGAD-SKEVHYKNRFW----------HDTCFRCAKCLHPLA-NETFVAK-DNKILCNKCTTR--EDSP 67 (101)
T ss_dssp SCCCBCSSSCCBCCSS-SCEEEETTEEE----------ETTTCCCSSSCCCTT-SSCCEEE-TTEEECHHHHTT--CCCC
T ss_pred CCCCcCcccCCcccCC-ceEEEECccCh----------hhcCCcccccCCCCC-cCeeECc-CCEEEChhHhhh--hcCC
Confidence 5789999999999742 13788888764 999999999999995 7778766 999999999998 6889
Q ss_pred CCCchhhHHH
Q 019740 120 ECQPLYLEIQ 129 (336)
Q Consensus 120 ~C~~c~~~I~ 129 (336)
+|..|.++|.
T Consensus 68 ~C~~C~~~I~ 77 (101)
T 2cup_A 68 KCKGCFKAIV 77 (101)
T ss_dssp BCSSSCCBCC
T ss_pred ccccCCCccc
Confidence 9999987764
No 38
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.12 E-value=5.1e-11 Score=88.68 Aligned_cols=67 Identities=19% Similarity=0.467 Sum_probs=56.4
Q ss_pred cccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhcccCC
Q 019740 39 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDT 118 (336)
Q Consensus 39 ~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~ 118 (336)
++++++|..|+++|.++ .|.+.++.| |+.||+|..|+++|. +..|+.. ||++||..||.+ .+.
T Consensus 2 ~~~~~~C~~C~~~I~~~---~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~~~~yC~~cy~~--~f~ 64 (70)
T 2d8z_A 2 SSGSSGCVQCKKPITTG---GVTYREQPW----------HKECFVCTACRKQLS-GQRFTAR-DDFAYCLNCFCD--LYA 64 (70)
T ss_dssp CCCCCBCSSSCCBCCSS---EEESSSSEE----------ETTTSBCSSSCCBCT-TSCCEES-SSSEECHHHHHH--HTC
T ss_pred CCCCCCCcccCCeeccc---eEEECcccc----------CCCCCccCCCCCcCC-cCceEee-CCeEECHHHHHH--Hhc
Confidence 35789999999999864 577777763 999999999999996 6778765 999999999988 577
Q ss_pred CCCC
Q 019740 119 HECQ 122 (336)
Q Consensus 119 ~~C~ 122 (336)
++|.
T Consensus 65 ~~c~ 68 (70)
T 2d8z_A 65 SGPS 68 (70)
T ss_dssp CCCT
T ss_pred cccC
Confidence 7775
No 39
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.12 E-value=7.8e-12 Score=94.73 Aligned_cols=46 Identities=22% Similarity=0.426 Sum_probs=42.2
Q ss_pred CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCc
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD 46 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~ 46 (336)
+|+.||++||+|..|+++|.+..|+.+||++||+.||.++|+++|.
T Consensus 31 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 31 NGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp TTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred CccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 4789999999999999999988899999999999999999999996
No 40
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.11 E-value=4.4e-11 Score=90.33 Aligned_cols=62 Identities=16% Similarity=0.392 Sum_probs=52.6
Q ss_pred cccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhc
Q 019740 39 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 114 (336)
Q Consensus 39 ~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~ 114 (336)
.+|+++|..|+++|.+. +|.+.++.| |+.||+|..|+++|..+..|+.. +|++||..|+..+
T Consensus 2 s~~~~~C~~C~~~I~~~---~v~a~~~~w----------H~~CF~C~~C~~~L~~~~~f~~~-~~~~yC~~C~~~~ 63 (73)
T 1wig_A 2 SSGSSGCDSCEKYITGR---VLEAGEKHY----------HPSCALCVRCGQMFAEGEEMYLQ-GSSIWHPACRQAA 63 (73)
T ss_dssp CCSCCSCSSSCCCCSSC---CBCCSSCCB----------CTTTSCCSSSCCCCCSSCCCEEE-TTEEECTTHHHHT
T ss_pred CcCcCCcccCCCEecCe---eEEeCCCCC----------CCCcCEeCCCCCCCCCCCeeEee-CCEEEChHHChHh
Confidence 36899999999999985 577777653 99999999999999656777665 9999999999874
No 41
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.10 E-value=1.7e-11 Score=90.32 Aligned_cols=44 Identities=23% Similarity=0.434 Sum_probs=41.7
Q ss_pred CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCc
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPK 44 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pk 44 (336)
+|+.||++||+|..|+++|.+..|+.+||++||+.||.++|+|+
T Consensus 23 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 23 MGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp TTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred CccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 57899999999999999999989999999999999999999885
No 42
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.09 E-value=3.1e-11 Score=94.76 Aligned_cols=52 Identities=23% Similarity=0.447 Sum_probs=47.1
Q ss_pred CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcccCCcc
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFI 52 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~C~~~I 52 (336)
+|+.||++||+|..|+++|.+..|+.+|+++||+.||.++|+++|..+....
T Consensus 34 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~~g~g 85 (91)
T 2d8y_A 34 NQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFG 85 (91)
T ss_dssp SSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCCSCCC
T ss_pred CCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCccCCcC
Confidence 5789999999999999999988899999999999999999999998555443
No 43
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.08 E-value=2.5e-11 Score=92.68 Aligned_cols=47 Identities=26% Similarity=0.686 Sum_probs=44.3
Q ss_pred CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcc
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 47 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~ 47 (336)
+|+.||++||+|..|+++|.+..|+.+++++||+.||.++|+++|..
T Consensus 33 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~s 79 (80)
T 2cuq_A 33 RDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPSS 79 (80)
T ss_dssp SSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTTC
T ss_pred CCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCCC
Confidence 57899999999999999999889999999999999999999999963
No 44
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.08 E-value=2.2e-11 Score=101.34 Aligned_cols=112 Identities=14% Similarity=0.159 Sum_probs=80.6
Q ss_pred CCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCC-CCceEEcCCCceeccchhhhcccCCC-
Q 019740 42 HPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPR-DTKYLSLDDGRKLCLECLDSAIMDTH- 119 (336)
Q Consensus 42 ~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~-~~~f~~~~dG~~yC~~C~~~~v~~~~- 119 (336)
.++|..|+++|.+.. ++.+.++. | |+.||+|..|+++|.. +..|+.. ||++||..||.+ ...+
T Consensus 2 ~~~C~~C~~~I~~~~--~~~a~~~~-w---------H~~CF~C~~C~~~L~~~~~~~~~~-~g~~yC~~~y~~--~~~~~ 66 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRY--FLKAIDQY-W---------HEDCLSCDLCGCRLGEVGRRLYYK-LGRKLCRRDYLR--LFGQD 66 (131)
T ss_dssp CCBBTTTCCBCCSSE--EEEETTEE-E---------ETTTCBCTTTCCBCSSTTCCEEEE-TTEEECHHHHHH--HHCCC
T ss_pred cccCcCCCCEeCCcE--EEEECCCc-c---------cHHHcccCcCCCccccCCCeEEEE-CCEEeecCchhh--hCCCc
Confidence 478999999999752 57888876 4 9999999999999962 5678776 999999999998 4555
Q ss_pred -CCCchhhHHHHHHhhccceeccccccchhcHHHHHHhhcCcC----------CCCCCCCCcCCccccccceecc
Q 019740 120 -ECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEK----------NGHHHLPETRGLCLSEEQTVTT 183 (336)
Q Consensus 120 -~C~~c~~~I~~f~~glg~~i~~~~p~~lV~~~ALn~a~~~e~----------~g~~h~~~~rGl~~~E~~~~~s 183 (336)
.|..|.++|... ..+ +.|+++.||.+- ..+..+...+|..||+.++...
T Consensus 67 ~~C~~C~~~I~~~---------e~~------~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~ 126 (131)
T 2xjy_A 67 GLCASCDKRIRAY---------EMT------MRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEW 126 (131)
T ss_dssp EECTTTCCEECTT---------SEE------EEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHH
T ss_pred cChhhcCCccCcc---------cee------EeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHH
Confidence 899898776310 011 235666665431 1233355778889998887543
No 45
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.08 E-value=2.1e-11 Score=93.08 Aligned_cols=47 Identities=28% Similarity=0.660 Sum_probs=44.3
Q ss_pred CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCcc
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 47 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~ 47 (336)
+|+.||++||+|..|+++|.+..|+.+++++||+.||.++|+++|..
T Consensus 33 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 33 MDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPSS 79 (80)
T ss_dssp TTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCCC
T ss_pred CCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCCC
Confidence 57899999999999999999888999999999999999999999974
No 46
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.07 E-value=8.3e-11 Score=87.87 Aligned_cols=69 Identities=16% Similarity=0.412 Sum_probs=56.8
Q ss_pred cccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhcccCC
Q 019740 39 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDT 118 (336)
Q Consensus 39 ~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~ 118 (336)
++++++|..|+++|.+.+ .++.+.++.| |..||+|..|+++|. +..|+.. +|++||..||.+ .+.
T Consensus 2 ~~~~~~C~~C~~~I~~~~-~~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~~~~yC~~cy~~--~f~ 66 (72)
T 1wyh_A 2 SSGSSGCSACGETVMPGS-RKLEYGGQTW----------HEHCFLCSGCEQPLG-SRSFVPD-KGAHYCVPCYEN--KFA 66 (72)
T ss_dssp CCCCCBCSSSCCBCCSSS-CEECSTTCCE----------ETTTCBCTTTCCBTT-TSCEEEE-TTEEEEHHHHHH--HTS
T ss_pred CccCCCCccCCCccccCc-cEEEECcccc----------CcccCeECCCCCcCC-CCccCCc-CCeEECHHHHHH--Hcc
Confidence 468899999999999631 2677777653 999999999999996 5678765 999999999988 677
Q ss_pred CCCC
Q 019740 119 HECQ 122 (336)
Q Consensus 119 ~~C~ 122 (336)
++|.
T Consensus 67 ~~C~ 70 (72)
T 1wyh_A 67 SGPS 70 (72)
T ss_dssp CCCC
T ss_pred CcCC
Confidence 7775
No 47
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.07 E-value=2.8e-11 Score=92.80 Aligned_cols=47 Identities=17% Similarity=0.442 Sum_probs=43.2
Q ss_pred CCCcccCCCeeecCCCCCCCCCceeec-CCccccccccccccCCcCcc
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFSMS-GNRPYHKHCYKEQHHPKCDV 47 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~~~-dg~~yC~~CY~~~~~pkC~~ 47 (336)
+|+.||++||+|..|+++|.+..|+.. +|++||+.||.++|+|+|++
T Consensus 33 ~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~~ 80 (81)
T 2dlo_A 33 MGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPSS 80 (81)
T ss_dssp TTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSCC
T ss_pred CCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCCC
Confidence 578999999999999999998888875 79999999999999999974
No 48
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.06 E-value=4.9e-12 Score=112.22 Aligned_cols=117 Identities=16% Similarity=0.193 Sum_probs=83.9
Q ss_pred ccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCC-CCceEEcCCCceeccchhhhcccCC
Q 019740 40 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPR-DTKYLSLDDGRKLCLECLDSAIMDT 118 (336)
Q Consensus 40 ~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~-~~~f~~~~dG~~yC~~C~~~~v~~~ 118 (336)
++.++|..|+++|.+. .++.+.++. | |+.||+|..|+++|.. +..|+.. ||++||..||.++ +.
T Consensus 3 l~~~~C~~C~~~I~~~--~~~~a~~~~-w---------H~~CF~C~~C~~~L~~~g~~~~~~-~g~~yC~~cy~~~--~~ 67 (188)
T 1rut_X 3 LSWKRCAGCGGKIADR--FLLYAMDSY-W---------HSRCLKCSSCQAQLGDIGTSSYTK-SGMILCRNDYIRL--FG 67 (188)
T ss_dssp -CCCBBTTTCCBCCCS--EEEEETTEE-E---------CGGGCBCTTTCCBHHHHCSEEEEE-TTEEECHHHHHHH--HS
T ss_pred CCCCcCccCCCEeCCc--eeEEecCcE-e---------cccCcccCCCCcccccCCceEEEe-CCccccccccccc--cc
Confidence 5678999999999975 257788876 4 9999999999999963 4678776 9999999999984 44
Q ss_pred C--CCCchhhHHHHHHhhccceeccccccchhcHHHHHHhhcCc----------CCCCCCCCCcCCccccccceecceec
Q 019740 119 H--ECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGE----------KNGHHHLPETRGLCLSEEQTVTTVLR 186 (336)
Q Consensus 119 ~--~C~~c~~~I~~f~~glg~~i~~~~p~~lV~~~ALn~a~~~e----------~~g~~h~~~~rGl~~~E~~~~~s~~~ 186 (336)
+ .|..|.++|... ..+ +.|+++.||.+ ...+..+...+|..||+.+|...+..
T Consensus 68 ~~~~C~~C~~~I~~~---------e~~------i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~ 132 (188)
T 1rut_X 68 NSGACSACGQSIPAS---------ELV------MRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALIN 132 (188)
T ss_dssp CCEECTTTCCEECTT---------SEE------EEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC-
T ss_pred cCCccccCCCccccC---------cEE------EEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhcc
Confidence 5 799888776410 011 23556666543 11123456788999999998766653
No 49
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.06 E-value=2.2e-10 Score=86.76 Aligned_cols=68 Identities=13% Similarity=0.282 Sum_probs=57.1
Q ss_pred cccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceecc-chhhhcccC
Q 019740 39 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCL-ECLDSAIMD 117 (336)
Q Consensus 39 ~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~-~C~~~~v~~ 117 (336)
..+.++|..|+++|.+.+ .|.+.++.| |+.||+|..|+++|. +..|+.. ||++||. .||.+ .+
T Consensus 6 ~~~~~~C~~C~~~I~~~~--~v~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~g~~yC~~~cy~~--~f 69 (76)
T 2cu8_A 6 SGMASKCPKCDKTVYFAE--KVSSLGKDW----------HKFCLKCERCSKTLT-PGGHAEH-DGKPFCHKPCYAT--LF 69 (76)
T ss_dssp CCCCCBCTTTCCBCCTTT--EEEETTEEE----------ETTTCBCSSSCCBCC-TTSCEEE-TTEEECTTTHHHH--HS
T ss_pred CCCCCCCcCCCCEeECCe--EEEECCeEe----------eCCCCCCCCCCCccC-CCceEeE-CCEEecchHHHHH--hc
Confidence 457899999999999543 678888764 999999999999996 6678766 9999999 79988 57
Q ss_pred CCCCC
Q 019740 118 THECQ 122 (336)
Q Consensus 118 ~~~C~ 122 (336)
.++|.
T Consensus 70 ~~kc~ 74 (76)
T 2cu8_A 70 GSGPS 74 (76)
T ss_dssp CSSCS
T ss_pred ccccC
Confidence 77775
No 50
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.06 E-value=3.4e-11 Score=94.19 Aligned_cols=46 Identities=22% Similarity=0.546 Sum_probs=43.5
Q ss_pred CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCc
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD 46 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~ 46 (336)
+++.||++||+|..|+++|.+..|+.+|+++||+.||.++|+|+|.
T Consensus 43 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 43 RDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp SSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred CCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 5789999999999999999988899999999999999999999985
No 51
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.06 E-value=1.5e-10 Score=86.64 Aligned_cols=68 Identities=16% Similarity=0.352 Sum_probs=54.4
Q ss_pred ccCCcCcccCCcccCC-CCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhcccCC
Q 019740 40 QHHPKCDVCQNFIPTN-SAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDT 118 (336)
Q Consensus 40 ~~~pkC~~C~~~I~~~-~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~ 118 (336)
++.++|..|+++|.+. +..+|.+.++.| |+.||+|..|+++|. +..|+.. ||++||..|+.+ .+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~w----------H~~CF~C~~C~~~L~-~~~f~~~-~g~~yC~~c~~~--~~~ 68 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQW----------HNDCFNCKKCSLSLV-GRGFLTE-RDDILCPDCGKD--ISG 68 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEE----------CTTTCBCSSSCCBCT-TSCCEEC-SSSEECHHHHHT--CCC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCccc----------CcccCEeccCCCcCC-CCccEeE-CCEEEChhHcCc--ccC
Confidence 5789999999999961 123677877763 999999999999996 7777655 999999999987 455
Q ss_pred CCC
Q 019740 119 HEC 121 (336)
Q Consensus 119 ~~C 121 (336)
+.+
T Consensus 69 p~~ 71 (72)
T 1x4l_A 69 PSS 71 (72)
T ss_dssp SSC
T ss_pred CCC
Confidence 544
No 52
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.03 E-value=2e-10 Score=87.01 Aligned_cols=68 Identities=15% Similarity=0.259 Sum_probs=56.9
Q ss_pred CcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceecc-chhhhcccCCCCC
Q 019740 43 PKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCL-ECLDSAIMDTHEC 121 (336)
Q Consensus 43 pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~-~C~~~~v~~~~~C 121 (336)
|+|..|+++|.... .|.+.++.| |..||+|..|+++|. +..|+.. ||++||. .||.+ .+.++|
T Consensus 1 p~C~~C~~~I~~~~--~v~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~g~~yC~~~cy~~--~f~~~C 64 (76)
T 1iml_A 1 PKCPKCDKEVYFAE--RVTSLGKDW----------HRPCLKCEKCGKTLT-SGGHAEH-EGKPYCNHPCYSA--MFGPKG 64 (76)
T ss_dssp CBCTTTSSBCCGGG--EEEETTEEE----------ETTTCBCTTTCCBCC-TTTEEEE-TTEEEETTTHHHH--HSSCCC
T ss_pred CcCCCCCCEEECce--EEEECCccc----------cCCCCCccccCccCC-CCceECc-CCeEeeCHHHHHH--HhCccC
Confidence 68999999998532 678887764 999999999999996 5578765 9999999 69988 678899
Q ss_pred Cchhh
Q 019740 122 QPLYL 126 (336)
Q Consensus 122 ~~c~~ 126 (336)
..|..
T Consensus 65 ~~C~~ 69 (76)
T 1iml_A 65 FGRGG 69 (76)
T ss_dssp SSCCC
T ss_pred CCcCC
Confidence 88863
No 53
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.02 E-value=4.7e-11 Score=88.94 Aligned_cols=46 Identities=30% Similarity=0.750 Sum_probs=42.6
Q ss_pred CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCc
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD 46 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~ 46 (336)
+|+.||++||+|..|+++|.+..|+.+++++||+.||.++|+++..
T Consensus 23 ~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~ 68 (70)
T 2d8x_A 23 MNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGPS 68 (70)
T ss_dssp TTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCSC
T ss_pred CcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCCC
Confidence 5789999999999999999998999999999999999999988753
No 54
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.02 E-value=6.2e-11 Score=90.88 Aligned_cols=46 Identities=24% Similarity=0.562 Sum_probs=43.6
Q ss_pred CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCc
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD 46 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~ 46 (336)
+|+.||++||+|..|+++|.+..|+.+++++||+.||.++|+|+|.
T Consensus 35 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~ 80 (82)
T 1x63_A 35 KGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPS 80 (82)
T ss_dssp SSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCS
T ss_pred CccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCC
Confidence 5789999999999999999998999999999999999999999985
No 55
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.01 E-value=2.3e-10 Score=86.49 Aligned_cols=68 Identities=13% Similarity=0.346 Sum_probs=54.7
Q ss_pred ccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhcccCCC
Q 019740 40 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH 119 (336)
Q Consensus 40 ~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~ 119 (336)
.+.++|..|+++|.+. +.++.+.++.| |..||+|..|+++|. +..|+.. ||++||..||.+ .+.+
T Consensus 9 ~~~~~C~~C~~~I~~~-~~~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~g~~yC~~~y~~--~f~~ 73 (77)
T 1g47_A 9 LASATCERCKGGFAPA-EKIVNSNGELY----------HEQCFVCAQCFQQFP-EGLFYEF-EGRKYCEHDFQM--LFAP 73 (77)
T ss_dssp CCCCBCSSSCCBCCST-TTCEEETTEEE----------CTTTCCCTTTCCCCG-GGCSEEE-TTEEECHHHHHH--HCCC
T ss_pred CCCCCchhcCCccCCC-ceEEEeCccEe----------ccccCeECCCCCCCC-CCCeEeE-CCeEeCHHHHHH--Hhhc
Confidence 5788999999999853 23677888764 999999999999996 5567766 999999999988 5677
Q ss_pred CCC
Q 019740 120 ECQ 122 (336)
Q Consensus 120 ~C~ 122 (336)
.|.
T Consensus 74 ~C~ 76 (77)
T 1g47_A 74 CWI 76 (77)
T ss_dssp C--
T ss_pred ccC
Confidence 764
No 56
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.01 E-value=2e-10 Score=84.65 Aligned_cols=61 Identities=21% Similarity=0.554 Sum_probs=50.7
Q ss_pred cCCcCcccCCcccCCCCceEEEeeecccccccCCCCcC--CCCCccCCCCccCCCCCceEEcCCCceec-cchhhhc
Q 019740 41 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHER--DGTPRCCSCERMEPRDTKYLSLDDGRKLC-LECLDSA 114 (336)
Q Consensus 41 ~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H--~~CF~C~~C~~~l~~~~~f~~~~dG~~yC-~~C~~~~ 114 (336)
|+++|..|+++|.+. +..|.+.++.| | +.||+|..|+++|. +..|+.. ||++|| ..|+.++
T Consensus 1 fa~~C~~C~~~I~~~-~~~v~a~~~~w----------H~~~~CF~C~~C~~~L~-~~~f~~~-~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 1 HAVVCQGCHNAIDPE-VQRVTYNNFSW----------HASTECFLCSCCSKCLI-GQKFMPV-EGMVFCSVECKKRM 64 (65)
T ss_dssp -CEECTTTSSEECTT-SCEEEETTEEE----------ETTTTTSBCTTTCCBCT-TSCCEEE-TTEEESSHHHHHTT
T ss_pred CcCCCcCCCCeeccC-ceEEEECCCcc----------CCCCCCEECCCCCCcCC-CCceEEE-CCEEecCHHHhhhh
Confidence 578999999999953 13788888764 9 99999999999996 7788766 899999 8998763
No 57
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.01 E-value=1e-10 Score=89.68 Aligned_cols=45 Identities=18% Similarity=0.331 Sum_probs=41.1
Q ss_pred CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCc
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD 46 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~ 46 (336)
+|+.||++||+|..|+++|.+.. +.+||++||+.||.++|+|++.
T Consensus 33 ~~~~~H~~CF~C~~C~~~L~~~~-f~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 33 KNDPYHPDHFNCANCGKELTADA-RELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp SSSCCCTTTSBCSSSCCBCCTTC-EEETTEEECHHHHHTTSCCSSC
T ss_pred CcceeCCCCCEeCCCCCccCCCC-EeECCEEeCHHHHHHhCCCCCC
Confidence 58899999999999999999874 5899999999999999999764
No 58
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.01 E-value=2.5e-11 Score=92.87 Aligned_cols=46 Identities=17% Similarity=0.436 Sum_probs=43.1
Q ss_pred CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCc
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD 46 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~ 46 (336)
+++.||++||+|..|+++|.+..|+.+|+++||+.||.++|+|++.
T Consensus 33 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 33 RDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp SSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred CcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 5789999999999999999888899999999999999999999875
No 59
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.01 E-value=1.3e-10 Score=85.54 Aligned_cols=60 Identities=15% Similarity=0.314 Sum_probs=51.2
Q ss_pred cccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhh
Q 019740 39 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDS 113 (336)
Q Consensus 39 ~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~ 113 (336)
+++.++|..|+++|.++ .|.+.++.| |+.||+|..|+++|. +..|+.. ||++||..||.+
T Consensus 2 ~~~~~~C~~C~~~I~~~---~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~g~~yC~~~y~~ 61 (66)
T 1nyp_A 2 SMGVPICGACRRPIEGR---VVNAMGKQW----------HVEHFVCAKCEKPFL-GHRHYER-KGLAYCETHYNQ 61 (66)
T ss_dssp CCCCCEETTTTEECCSC---EECCTTSBE----------ETTTCBCTTTCCBCS-SSCCEEE-TTEEECHHHHHH
T ss_pred CcCCCCCcccCCEecce---EEEECcccc----------ccCcCEECCCCCCCC-CCceEeE-CCcEECHHHHHH
Confidence 46889999999999953 677777653 999999999999996 6778765 999999999987
No 60
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.01 E-value=1.8e-10 Score=88.21 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=51.5
Q ss_pred cCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhcccCCCC
Q 019740 41 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE 120 (336)
Q Consensus 41 ~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~~ 120 (336)
..++|..|+++|.... .+.+.++.| |+.||+|..|+++|. +..|+.. ||++||..||.+ .+.++
T Consensus 6 ~~~~C~~C~~~I~~~~--~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~~~~yC~~cy~~--~f~~~ 69 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAE--EVQCDGRSF----------HRCCFLCMVCRKNLD-STTVAIH-DAEVYCKSCYGK--KYGPK 69 (81)
T ss_dssp --CBCSSSCCBCSSTT--EEEETTEEE----------ESSSEECSSSCCEEC-SSCCEEE-TTEEECSHHHHH--HCC--
T ss_pred CCCcCcCcCccccCce--eEEeCCccc----------ccccCccCCCCCCCC-CCCeEee-CCEEECHHHHHH--HhCCc
Confidence 5689999999997543 678888764 999999999999996 5667766 999999999998 68888
Q ss_pred CCchhh
Q 019740 121 CQPLYL 126 (336)
Q Consensus 121 C~~c~~ 126 (336)
|.+|..
T Consensus 70 c~gcg~ 75 (81)
T 1a7i_A 70 GYGYGQ 75 (81)
T ss_dssp ------
T ss_pred ccccCC
Confidence 887753
No 61
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.00 E-value=3.4e-10 Score=84.60 Aligned_cols=63 Identities=14% Similarity=0.359 Sum_probs=52.7
Q ss_pred ccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhcc
Q 019740 40 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAI 115 (336)
Q Consensus 40 ~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v 115 (336)
+++++|..|+++|.+.+ .+|.+.++.| |..||+|..|+++|. +..|+.. ||++||..||.++.
T Consensus 3 ~~~~~C~~C~~~I~~~~-~~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~~~~yC~~cy~~~~ 65 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDG-AGVVALDRVF----------HVGCFVCSTCRAQLR-GQHFYAV-ERRAYCEGCYVATL 65 (72)
T ss_dssp SCCCCCSSSCSCCCSSS-CCEECSSSEE----------CTTTCBCSSSCCBCT-TSCEEES-SSCEEEHHHHHHHH
T ss_pred CCCCCCccCCCccCCCc-eEEEECCCeE----------cccCCcccccCCcCC-cCcCEee-CCeEECHHHHHHHH
Confidence 57899999999998631 3677887763 999999999999995 7788766 89999999998753
No 62
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=98.99 E-value=1.2e-10 Score=96.45 Aligned_cols=72 Identities=13% Similarity=0.279 Sum_probs=57.4
Q ss_pred cccccCC--cCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhc
Q 019740 37 YKEQHHP--KCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 114 (336)
Q Consensus 37 Y~~~~~p--kC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~ 114 (336)
|.++|++ +|..|+++|.+.+ .++.+.++.| |..||+|..|+++|..+..|+.. +|++||..||.++
T Consensus 1 Y~r~fg~~~~C~~C~~~I~~~e-~~~~a~~~~~----------H~~CF~C~~C~~~L~~g~~f~~~-~g~~yC~~cy~~~ 68 (123)
T 2l3k_A 1 YLRLFGQDGLCASCDKRIRAYE-MTMRVKDKVY----------HLECFKCAACQKHFSVGDRYLLI-NSDIVCEQDIYEW 68 (123)
T ss_dssp CCSSSSSSCCCSSSSCCCCTTC-CCCCCSSCCC----------CTTTCBCTTTCCBCCTTCEEEEC-SSSEEEGGGHHHH
T ss_pred ChhhhCCCCcccCCCCeecCCc-eEEEECCccc----------ccccCccccCCCCCCCCCcEEee-CCEEEcHHHhHHH
Confidence 6778998 9999999999642 3566777653 99999999999999657788766 8999999999873
Q ss_pred ccCCCCCC
Q 019740 115 IMDTHECQ 122 (336)
Q Consensus 115 v~~~~~C~ 122 (336)
+.++|.
T Consensus 69 --~~~~~~ 74 (123)
T 2l3k_A 69 --TKINGG 74 (123)
T ss_dssp --HHHHTC
T ss_pred --hccccC
Confidence 334443
No 63
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.98 E-value=3.8e-10 Score=92.27 Aligned_cols=100 Identities=13% Similarity=0.119 Sum_probs=73.2
Q ss_pred CCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCC-CCceEEcCCCceeccchhhhcccCCCC
Q 019740 42 HPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPR-DTKYLSLDDGRKLCLECLDSAIMDTHE 120 (336)
Q Consensus 42 ~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~-~~~f~~~~dG~~yC~~C~~~~v~~~~~ 120 (336)
.++|..|+++|.+.. ++.+.++. | |+.||+|..|+++|.. +..|+.. ||++||..||.+ .+.++
T Consensus 3 ~~~C~~C~~~I~~~~--~~~a~~~~-w---------H~~CF~C~~C~~~L~~~g~~~~~~-~g~~yC~~~y~~--~f~~~ 67 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRY--FLKAIDQY-W---------HEDCLSCDLCGCRLGEVGRRLYYK-LGRKLCRRDYLR--LGGSG 67 (114)
T ss_dssp CBCBSSSCSCBCSSE--EEECSSSE-E---------CTTTCCCSSSCSCCCCSSSCCCCB-TTBCCCHHHHHH--HHTSC
T ss_pred CCCCcCCCCeeCCcE--EEEECchh-H---------HHhcCcccccCCchhcCCCeeEEE-CCeeechHHHHH--HhCcc
Confidence 478999999999752 67777766 3 9999999999999963 4578765 999999999998 57778
Q ss_pred CCchhhHHHHHHhhccceeccccccchhcHHHHHHhhcCcCCCCCCCCCcCCcccccccee
Q 019740 121 CQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTV 181 (336)
Q Consensus 121 C~~c~~~I~~f~~glg~~i~~~~p~~lV~~~ALn~a~~~e~~g~~h~~~~rGl~~~E~~~~ 181 (336)
|..|.. + ..+. + ......+..|...+|.+||..++.
T Consensus 68 c~~c~~-------~--~~~~-----------~-----~~~~~~g~~f~~~~~~~~C~~~~~ 103 (114)
T 1j2o_A 68 GHMGSG-------G--DVMV-----------V-----GEPTLMGGEFGDEDERLITRLENT 103 (114)
T ss_dssp CSSCBS-------C--SCCC-----------S-----SCSSTTSSBCCCSSSCCCEEEECT
T ss_pred cCcCCC-------C--ceeE-----------c-----CCccCCCCeeEEcCCEeecchhhh
Confidence 776641 1 1110 0 122233446779999999988765
No 64
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=98.98 E-value=3.4e-10 Score=84.04 Aligned_cols=64 Identities=14% Similarity=0.450 Sum_probs=52.8
Q ss_pred cccccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhh
Q 019740 37 YKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDS 113 (336)
Q Consensus 37 Y~~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~ 113 (336)
|..++.++|..|+++|.+.+ .++.+.++.| |..||+|..|+++|. +..|+.. ||++||..|+.+
T Consensus 6 y~~~~~~~C~~C~~~i~~~e-~~~~~~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~g~~yC~~~y~~ 69 (72)
T 3f6q_B 6 FQGSASATCERCKGGFAPAE-KIVNSNGELY----------HEQCFVCAQCFQQFP-EGLFYEF-EGRKYCEHDFQM 69 (72)
T ss_dssp CCCCTTCBCTTTCCBCCTTC-EEEEETTEEE----------ETTTSSCTTTCCCCG-GGCCEEE-TTEEECHHHHHH
T ss_pred ccCcCCccchhcCccccCCc-eEEEeCcCee----------CcCCCcccCCCCCCC-CCCeEeE-CCeEeCHHHHHH
Confidence 44578899999999999753 3567888764 999999999999996 4467766 899999999976
No 65
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.97 E-value=5.4e-10 Score=83.13 Aligned_cols=60 Identities=23% Similarity=0.538 Sum_probs=50.9
Q ss_pred ccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhc
Q 019740 40 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 114 (336)
Q Consensus 40 ~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~ 114 (336)
.+.++|..|+++|.++ +|.+.++.| |+.||+|..|+++|. +..|+.. ||++||..||.++
T Consensus 3 ~~~~~C~~C~~~I~~~---~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~f~~~-~g~~yC~~c~~~~ 62 (70)
T 2d8x_A 3 SGSSGCHQCGEFIIGR---VIKAMNNSW----------HPECFRCDLCQEVLA-DIGFVKN-AGRHLCRPCHNRE 62 (70)
T ss_dssp CCSSBCSSSCCBCCSC---CEEETTEEE----------CTTTSBCSSSCCBCS-SSCCEEE-TTEEECHHHHHHH
T ss_pred CCCCcCccCCCEecce---EEEECcccc----------cccCCEeCCCCCcCC-CCccEeE-CCeEECHHHhhhh
Confidence 3578999999999964 688888764 999999999999996 5567654 9999999999874
No 66
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=98.97 E-value=4.4e-11 Score=106.33 Aligned_cols=59 Identities=19% Similarity=0.384 Sum_probs=49.6
Q ss_pred CCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhc
Q 019740 42 HPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 114 (336)
Q Consensus 42 ~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~ 114 (336)
.++|..|+++|.... .+.+.++.| |+.||+|..|+++|. +..|+.. ||++||..||.++
T Consensus 7 ~~~C~~C~~~I~~~~--~v~a~g~~w----------H~~CF~C~~C~~~L~-~~~~~~~-~g~~yC~~cy~~~ 65 (192)
T 1b8t_A 7 GKKCGVCQKAVYFAE--EVQCEGSSF----------HKSCFLCMVCKKNLD-STTVAVH-GDEIYCKSCYGKK 65 (192)
T ss_dssp CEECTTTCCEECSSC--CEEETTEEE----------CTTTCBCTTTCCBCC-SSSEEEE-TTEEEEHHHHHHH
T ss_pred CCcCccCCCeeccee--EEEeCCcee----------cCCCCcCcccCCcCC-CCeeEec-CCEeeChhhhHhh
Confidence 579999999997543 577888763 999999999999996 5678766 9999999999874
No 67
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.96 E-value=1.3e-10 Score=86.96 Aligned_cols=47 Identities=21% Similarity=0.569 Sum_probs=41.4
Q ss_pred CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccCCcCccc
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVC 48 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~C 48 (336)
+|+.||++||+|..|+++|.+..|+.+++++||+.||.++|. +|..+
T Consensus 25 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~-~~~~~ 71 (72)
T 1x61_A 25 LDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE-SGPSS 71 (72)
T ss_dssp SSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH-TCSSC
T ss_pred CCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc-cCCCC
Confidence 578999999999999999998889999999999999998774 45443
No 68
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=98.94 E-value=2e-10 Score=95.16 Aligned_cols=56 Identities=13% Similarity=0.206 Sum_probs=50.6
Q ss_pred CCCcccCCCeeecCCCCCC-CCCceeecCCccccccccccccCCcCcccCCcccCCC
Q 019740 1 MEAFWHPECFRCHSCNLPI-TDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNS 56 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L-~~~~F~~~dg~~yC~~CY~~~~~pkC~~C~~~I~~~~ 56 (336)
+++.||++||+|..|+++| .+..|+.+++++||+.||.++++++|..|...+.+.+
T Consensus 28 ~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~~ 84 (123)
T 2l3k_A 28 KDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGGSGGD 84 (123)
T ss_dssp SSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCCSCCSC
T ss_pred CCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCCCccCC
Confidence 5789999999999999999 4567999999999999999999999999988877653
No 69
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.94 E-value=2.6e-10 Score=86.04 Aligned_cols=44 Identities=23% Similarity=0.550 Sum_probs=40.1
Q ss_pred CCCcccCCCeeecCCCCCCC-CCceeecCCccccccccccccCCc
Q 019740 1 MEAFWHPECFRCHSCNLPIT-DVEFSMSGNRPYHKHCYKEQHHPK 44 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~-~~~F~~~dg~~yC~~CY~~~~~pk 44 (336)
+|+.||++||+|..|+++|. +..|+.+++++||+.||.+++...
T Consensus 23 ~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~ 67 (73)
T 1wig_A 23 GEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTED 67 (73)
T ss_dssp SSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSS
T ss_pred CCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhccc
Confidence 58899999999999999998 778999999999999999877653
No 70
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.93 E-value=1e-09 Score=84.28 Aligned_cols=65 Identities=15% Similarity=0.265 Sum_probs=53.7
Q ss_pred cCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhcccCCCC
Q 019740 41 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE 120 (336)
Q Consensus 41 ~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~~ 120 (336)
..++|..|+++|.... +|.+.++.| |+.||+|..|+++|. + .|+.. ||++||..||.+ .+.+.
T Consensus 14 ~~~~C~~C~~~I~~~~--~v~a~~~~w----------H~~CF~C~~C~~~L~-~-~~~~~-~g~~yC~~~y~~--~fg~~ 76 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQ--SLLALDKQW----------HVSCFKCQTCSVILT-G-EYISK-DGVPYCESDYHA--QFGSG 76 (80)
T ss_dssp SCSCCTTTCCCCSSSC--CEEETTEEE----------CTTTCBCSSSCCBCS-S-CCEEE-TTEEECTTHHHH--HTTCC
T ss_pred CCCCCcCcCCeeCCCe--EEEECCccc----------ccccCCcCcCCCCcC-C-CeEEE-CCEEECHHHHHH--HcCCC
Confidence 3578999999998543 678888763 999999999999996 5 57765 999999999988 57777
Q ss_pred CC
Q 019740 121 CQ 122 (336)
Q Consensus 121 C~ 122 (336)
|.
T Consensus 77 C~ 78 (80)
T 2dj7_A 77 PS 78 (80)
T ss_dssp ST
T ss_pred CC
Confidence 75
No 71
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.91 E-value=9.2e-10 Score=84.27 Aligned_cols=64 Identities=20% Similarity=0.485 Sum_probs=51.9
Q ss_pred ccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhcccCCC
Q 019740 40 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH 119 (336)
Q Consensus 40 ~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~ 119 (336)
.+.++|..|+++|.+. .|.+.++.| |+.||+|..|+++|. +.. +.. ||++||..||.+ .+++
T Consensus 13 ~~~~~C~~C~~~I~~~---~v~a~~~~~----------H~~CF~C~~C~~~L~-~~~-f~~-~g~~yC~~cy~~--~f~p 74 (79)
T 2cor_A 13 LGKYICQKCHAIIDEQ---PLIFKNDPY----------HPDHFNCANCGKELT-ADA-REL-KGELYCLPCHDK--MGVS 74 (79)
T ss_dssp CCCCBCTTTCCBCCSC---CCCCSSSCC----------CTTTSBCSSSCCBCC-TTC-EEE-TTEEECHHHHHT--TSCC
T ss_pred cCCCCCccCCCEecce---EEEECccee----------CCCCCEeCCCCCccC-CCC-EeE-CCEEeCHHHHHH--hCCC
Confidence 5678999999999964 577777663 999999999999996 444 455 999999999988 5555
Q ss_pred CC
Q 019740 120 EC 121 (336)
Q Consensus 120 ~C 121 (336)
.+
T Consensus 75 ~~ 76 (79)
T 2cor_A 75 GP 76 (79)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 72
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.91 E-value=6.6e-10 Score=85.66 Aligned_cols=45 Identities=20% Similarity=0.476 Sum_probs=40.5
Q ss_pred CCCcccCCCeeecCCCCCCCCCcee--ecCCccccccccccccCCcC
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFS--MSGNRPYHKHCYKEQHHPKC 45 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~--~~dg~~yC~~CY~~~~~pkC 45 (336)
+|+.||++||+|..|+++|.+..|+ ++||++||+.||.++|++-+
T Consensus 34 ~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~ 80 (82)
T 2co8_A 34 NGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPS 80 (82)
T ss_dssp TTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCC
T ss_pred CCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCC
Confidence 5789999999999999999998888 47999999999999987654
No 73
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.90 E-value=1.1e-09 Score=85.54 Aligned_cols=65 Identities=18% Similarity=0.323 Sum_probs=53.4
Q ss_pred ccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhcccCCC
Q 019740 40 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH 119 (336)
Q Consensus 40 ~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~ 119 (336)
...++|..|+++|.+. +|.+.++.| |..||+|..|++.|. +..|+.. ||++||..||.+ .+.+
T Consensus 23 ~~~~~C~~C~~~I~~~---~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~g~~yC~~~y~~--~f~p 85 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGA---VVKARDKYR----------HPECFVCADCNLNLK-QKGYFFV-EGELYCETHARA--RTSG 85 (89)
T ss_dssp CSCCBCTTTCCBCCSC---CEESSSCEE----------CTTTCCCSSSCCCTT-TSCCEEE-TTEEECHHHHHH--HSSS
T ss_pred CcCCCcccCCCEeccc---EEEECCceE----------CccCCEecCCCCCCC-CCCeEeE-CCEEECHHHHHH--HhCC
Confidence 3568999999999974 577777653 999999999999996 5577776 999999999988 4555
Q ss_pred CC
Q 019740 120 EC 121 (336)
Q Consensus 120 ~C 121 (336)
++
T Consensus 86 ~~ 87 (89)
T 1x64_A 86 PS 87 (89)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 74
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.88 E-value=1.2e-09 Score=85.64 Aligned_cols=67 Identities=19% Similarity=0.313 Sum_probs=55.0
Q ss_pred ccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhcccCCC
Q 019740 40 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH 119 (336)
Q Consensus 40 ~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~ 119 (336)
...++|..|+++|.+.+ .|.+.+..| |..||+|..|+++|. +..|+.. ||++||..||.+ .+.+
T Consensus 13 ~~~~~C~~C~~~I~~~~--~v~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~g~~yC~~~y~~--~f~~ 76 (91)
T 2d8y_A 13 PARETCVECQKTVYPME--RLLANQQVF----------HISCFRCSYCNNKLS-LGTYASL-HGRIYCKPHFNQ--LFKS 76 (91)
T ss_dssp SSSCBCTTTCCBCCTTS--EEECSSSEE----------ETTTCBCTTTCCBCC-TTTCCCS-SSCCCCHHHHHH--HSCC
T ss_pred CCCCcCccCCCccCCce--eEEECCCEE----------CCCCCeeCCCCCCCC-CCCcEeE-CCEEECHHHHHH--HhCC
Confidence 45789999999998753 677777653 999999999999996 5557655 999999999988 5777
Q ss_pred CCC
Q 019740 120 ECQ 122 (336)
Q Consensus 120 ~C~ 122 (336)
+|.
T Consensus 77 kc~ 79 (91)
T 2d8y_A 77 KGN 79 (91)
T ss_dssp CSC
T ss_pred CcC
Confidence 775
No 75
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.86 E-value=6e-10 Score=85.08 Aligned_cols=59 Identities=15% Similarity=0.276 Sum_probs=50.3
Q ss_pred cCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhc
Q 019740 41 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 114 (336)
Q Consensus 41 ~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~ 114 (336)
..++|..|+++|.++ +|.+.++.| |..||+|..|+++|. +..|+.. |+++||..||.++
T Consensus 14 ~~~~C~~C~~~I~~~---~~~a~~~~~----------H~~CF~C~~C~~~L~-~~~~~~~-~g~~yC~~cy~~~ 72 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV---FVKLRDRHR----------HPECYVCTDCGTNLK-QKGHFFV-EDQIYCEKHARER 72 (79)
T ss_dssp CCCCCSSSCCCCCSS---CEECSSCEE----------CTTTTSCSSSCCCHH-HHCCEES-SSCEECHHHHHHH
T ss_pred CCCccccCCCCccCc---EEEECccee----------CcCcCeeCCCCCCCC-CCCeEeE-CCEEECHHHHHHH
Confidence 468999999999975 688888764 999999999999995 6667765 9999999999873
No 76
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=98.85 E-value=3.2e-10 Score=84.24 Aligned_cols=42 Identities=21% Similarity=0.466 Sum_probs=38.9
Q ss_pred CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccccC
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHH 42 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~ 42 (336)
+|+.||++||+|..|+++|.+..|+.+||++||+.||.++|+
T Consensus 31 ~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 31 NGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp TTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred CcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 478999999999999999998889999999999999998874
No 77
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=98.85 E-value=1.5e-09 Score=90.35 Aligned_cols=62 Identities=18% Similarity=0.245 Sum_probs=51.8
Q ss_pred cccCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCC-CCCceEEcCCCceeccchhhh
Q 019740 39 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEP-RDTKYLSLDDGRKLCLECLDS 113 (336)
Q Consensus 39 ~~~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~-~~~~f~~~~dG~~yC~~C~~~ 113 (336)
..+.++|..|+++|.+.. ++.+.++.| |+.||+|..|+++|. .+..|+.. ||++||..||.+
T Consensus 58 ~~~~~~C~~C~~~I~~~~--~v~a~~~~w----------H~~CF~C~~C~~~L~~~g~~f~~~-dg~~yC~~cy~~ 120 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADRF--LLYAMDSYW----------HSRCLKCSSCQAQLGDIGTSSYTK-SGMILCRNDYIR 120 (123)
T ss_dssp CSSCSBBSSSSSBCCSSS--EEEETTEEE----------ETTTSBCTTTCCBGGGTTCCCBCS-SSCCBCHHHHHH
T ss_pred CccCCcCcCCCCCcCCcE--EEEeCCcEE----------cccccCcCcCCCcccccCCceEEE-CCEEeCHHHhhh
Confidence 356789999999999753 688888763 999999999999995 25678765 999999999986
No 78
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.82 E-value=8.4e-10 Score=84.38 Aligned_cols=46 Identities=30% Similarity=0.591 Sum_probs=41.2
Q ss_pred CCCcccCCCeeecCCCCCCCC-Ccee-ecCCccccccccccccCCcCc
Q 019740 1 MEAFWHPECFRCHSCNLPITD-VEFS-MSGNRPYHKHCYKEQHHPKCD 46 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~-~~F~-~~dg~~yC~~CY~~~~~pkC~ 46 (336)
+|+.||++||+|..|+++|.+ ..|. ++++++||+.||.++|++.|.
T Consensus 33 ~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~s 80 (81)
T 1x6a_A 33 GEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSS 80 (81)
T ss_dssp TTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTSC
T ss_pred CCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCCC
Confidence 578999999999999999974 6777 589999999999999998875
No 79
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=98.79 E-value=6.9e-10 Score=92.30 Aligned_cols=42 Identities=19% Similarity=0.559 Sum_probs=38.4
Q ss_pred CCCcccCCCeeecCCCCCCC--CCceeecCCccccccccccccC
Q 019740 1 MEAFWHPECFRCHSCNLPIT--DVEFSMSGNRPYHKHCYKEQHH 42 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~--~~~F~~~dg~~yC~~CY~~~~~ 42 (336)
+|+.||++||+|..|+++|. +..|+.++|++||+.||.++|+
T Consensus 80 ~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 80 MDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp TTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 57899999999999999997 4689999999999999998875
No 80
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=98.79 E-value=2e-09 Score=93.73 Aligned_cols=112 Identities=16% Similarity=0.234 Sum_probs=79.3
Q ss_pred cCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCCceeccchhhhcccCCCC
Q 019740 41 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE 120 (336)
Q Consensus 41 ~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~~ 120 (336)
..++|..|+++|.+.. ++.+.++. | |+.||+|..|+++|. +..| .. ||++||..||.+ .+.+.
T Consensus 5 ~~~~C~~C~~~I~~~~--~~~a~~~~-w---------H~~CF~C~~C~~~L~-~~~f-~~-~g~~yC~~~y~~--~f~~~ 67 (169)
T 2rgt_A 5 EIPMCAGCDQHILDRF--ILKALDRH-W---------HSKCLKCSDCHVPLA-ERCF-SR-GESVYCKDDFFK--RFGTK 67 (169)
T ss_dssp --CBBSSSSSBCCSSS--CEECSSCE-E---------CTTTSBCTTTCCBCC-SCCE-ES-SSCEECHHHHHH--HHSCB
T ss_pred CCCccccCCCccCCcE--EEEECCcE-E---------ccccCccCCCCCcCC-CCCc-cc-CCeeeecccccc--ccccc
Confidence 3579999999999753 57777776 3 999999999999996 4445 54 999999999998 67889
Q ss_pred CCchhhHHHHHHhhccceeccccccchhcHHHHHHhhcCcC----------C-CCCCCCCcCCccccccceecce
Q 019740 121 CQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEK----------N-GHHHLPETRGLCLSEEQTVTTV 184 (336)
Q Consensus 121 C~~c~~~I~~f~~glg~~i~~~~p~~lV~~~ALn~a~~~e~----------~-g~~h~~~~rGl~~~E~~~~~s~ 184 (336)
|..|.++|.. .+. -+.|+++.||.+- . |...+...+|..||+.+|...+
T Consensus 68 C~~C~~~I~~----------~~~-----v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~ 127 (169)
T 2rgt_A 68 CAACQLGIPP----------TQV-----VRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAK 127 (169)
T ss_dssp CTTTCCBCCT----------TSE-----EEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHH
T ss_pred ccccccccCC----------CcE-----EEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHh
Confidence 9999877641 000 0236666776431 1 2222345689999988876443
No 81
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.77 E-value=4.6e-09 Score=80.89 Aligned_cols=61 Identities=23% Similarity=0.385 Sum_probs=48.7
Q ss_pred cCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEE-cCCCceeccchhhhc
Q 019740 41 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLS-LDDGRKLCLECLDSA 114 (336)
Q Consensus 41 ~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~-~~dG~~yC~~C~~~~ 114 (336)
..++|..|+++|...+ .+.+.++.| |..||+|..|++.|. +..|+. ..||++||..||.++
T Consensus 14 ~~~~C~~C~~~I~~~e--~v~a~~~~w----------H~~CF~C~~C~~~L~-~~~~~~~~~~g~~yC~~~y~~~ 75 (82)
T 2co8_A 14 AGDLCALCGEHLYVLE--RLCVNGHFF----------HRSCFRCHTCEATLW-PGGYEQHPGDGHFYCLQHLPQT 75 (82)
T ss_dssp SSCBCSSSCCBCCTTT--BCCBTTBCC----------BTTTCBCSSSCCBCC-TTSEECCTTTCCCEETTTCCCC
T ss_pred CCCCCcccCCCcccce--EEEECCCee----------CCCcCEEcCCCCCcC-CCceeEeCcCCEEEChHHHHhh
Confidence 3579999999997543 566777653 999999999999996 666653 359999999999873
No 82
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=1.1e-09 Score=82.79 Aligned_cols=40 Identities=25% Similarity=0.711 Sum_probs=36.9
Q ss_pred CCCcccCCCeeecCCCCCCCCCceeecCCccccccccccc
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQ 40 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~ 40 (336)
+|+.||++||+|..|+++|.+..|+.++|++||+.||.++
T Consensus 38 ~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~l 77 (77)
T 2egq_A 38 EGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKKL 77 (77)
T ss_dssp TTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHHC
T ss_pred CcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhccC
Confidence 5789999999999999999998999999999999999753
No 83
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=98.76 E-value=1.5e-09 Score=79.92 Aligned_cols=40 Identities=25% Similarity=0.561 Sum_probs=37.2
Q ss_pred CCCccc--CCCeeecCCCCCCCCCceeecCCcccc-ccccccc
Q 019740 1 MEAFWH--PECFRCHSCNLPITDVEFSMSGNRPYH-KHCYKEQ 40 (336)
Q Consensus 1 lg~~wH--~~CF~C~~C~~~L~~~~F~~~dg~~yC-~~CY~~~ 40 (336)
+|+.|| ++||+|..|+++|.+..|+.+||++|| ++||.++
T Consensus 22 ~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 22 NNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp TTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred CCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 578999 999999999999999999999999999 8999764
No 84
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.46 E-value=3.8e-08 Score=75.12 Aligned_cols=42 Identities=21% Similarity=0.524 Sum_probs=35.0
Q ss_pred CCCcccCCCeeecCCCCCCCCCceeecCCc-cccccccccccC
Q 019740 1 MEAFWHPECFRCHSCNLPITDVEFSMSGNR-PYHKHCYKEQHH 42 (336)
Q Consensus 1 lg~~wH~~CF~C~~C~~~L~~~~F~~~dg~-~yC~~CY~~~~~ 42 (336)
+|+.||++||+|..|+++|.+..|+..++. +||+.||.+++.
T Consensus 33 ~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~ 75 (81)
T 1v6g_A 33 LGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSV 75 (81)
T ss_dssp TTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSS
T ss_pred CCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCC
Confidence 578999999999999999987677766665 699999987543
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=89.68 E-value=0.045 Score=34.10 Aligned_cols=29 Identities=10% Similarity=0.329 Sum_probs=21.7
Q ss_pred CCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCC
Q 019740 42 HPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTP 82 (336)
Q Consensus 42 ~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF 82 (336)
.++|..|++.+...+ .+.+.++.| |..||
T Consensus 3 ~~~C~~C~k~Vy~~E--k~~~~g~~~----------Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTE--KVNCLDKFW----------HKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGG--CCCSSSSCC----------CGGGC
T ss_pred CCcCCccCCEEecce--eEEECCeEe----------cccCC
Confidence 468999999997653 456777664 88887
No 86
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=86.97 E-value=0.17 Score=40.43 Aligned_cols=105 Identities=16% Similarity=0.390 Sum_probs=67.1
Q ss_pred CCeeecCCCCCCCCC------ceeecCCccccccccccc--cCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCC
Q 019740 8 ECFRCHSCNLPITDV------EFSMSGNRPYHKHCYKEQ--HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERD 79 (336)
Q Consensus 8 ~CF~C~~C~~~L~~~------~F~~~dg~~yC~~CY~~~--~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~ 79 (336)
+=+.|..|...+.+. .....=|..||..|..+. ....|..|++.+.... +.. .|. ..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~--l~~----l~i---------~~ 70 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR--YHP----IYI---------GS 70 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC--EEE----CBC---------SS
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc--ccc----ccc---------CC
Confidence 346788897776542 144456899999999764 3568999999998763 221 111 33
Q ss_pred CCCccCCCCccCCC----CCceEEcCCCceeccchhhhcccCCCCCCchhhH
Q 019740 80 GTPRCCSCERMEPR----DTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLE 127 (336)
Q Consensus 80 ~CF~C~~C~~~l~~----~~~f~~~~dG~~yC~~C~~~~v~~~~~C~~c~~~ 127 (336)
.-..|..|...+.. +...+...=|..+|..|..+.......|--|..+
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~ 122 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKK 122 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCB
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCc
Confidence 44778889876631 1222345578899999987764444455555443
No 87
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=79.87 E-value=0.88 Score=28.04 Aligned_cols=27 Identities=22% Similarity=0.513 Sum_probs=21.9
Q ss_pred eecCCCCCCCCCceeecCCcccccccc
Q 019740 11 RCHSCNLPITDVEFSMSGNRPYHKHCY 37 (336)
Q Consensus 11 ~C~~C~~~L~~~~F~~~dg~~yC~~CY 37 (336)
+|..|++..-..+-...+|+.|++.||
T Consensus 5 ~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 5 NCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp BCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred cCCccCCEEecceeEEECCeEecccCC
Confidence 688999998765666678999999886
No 88
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=74.52 E-value=2.7 Score=33.28 Aligned_cols=44 Identities=18% Similarity=0.401 Sum_probs=34.2
Q ss_pred eecCCCCCCCCCceeecCCcccccccccc---ccCCcCcccCCcccC
Q 019740 11 RCHSCNLPITDVEFSMSGNRPYHKHCYKE---QHHPKCDVCQNFIPT 54 (336)
Q Consensus 11 ~C~~C~~~L~~~~F~~~dg~~yC~~CY~~---~~~pkC~~C~~~I~~ 54 (336)
-|..|+.|+....-..-=+..||-+|+.. .....|..|+.+|..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 38899999976444445577999999965 445689999999985
No 89
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=73.46 E-value=2.6 Score=33.27 Aligned_cols=44 Identities=16% Similarity=0.407 Sum_probs=31.0
Q ss_pred eeecCCCCCCCCCceee-cCCccccccccccccCCcCcccCCcccC
Q 019740 10 FRCHSCNLPITDVEFSM-SGNRPYHKHCYKEQHHPKCDVCQNFIPT 54 (336)
Q Consensus 10 F~C~~C~~~L~~~~F~~-~dg~~yC~~CY~~~~~pkC~~C~~~I~~ 54 (336)
+.|..|...+.+. ... .=|..||..|..+.....|..|+.++..
T Consensus 23 ~~C~IC~~~~~~p-v~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 23 LRCSRCTNILREP-VCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWI 67 (117)
T ss_dssp TSCSSSCSCCSSC-BCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSC
T ss_pred CCCCCCChHhhCc-cEeCCCCCHHHHHHHHHHhcCCCcCCCCcCcc
Confidence 5678887777553 333 5688888888877666778888777653
No 90
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=73.41 E-value=0.56 Score=34.49 Aligned_cols=40 Identities=10% Similarity=0.120 Sum_probs=28.4
Q ss_pred CccCCCCccCCCCCceEEcCCCceeccchhhhcccCCCCCCchhhHHHHHHhhccceeccccccchhc
Q 019740 82 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVE 149 (336)
Q Consensus 82 F~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~~C~~c~~~I~~f~~glg~~i~~~~p~~lV~ 149 (336)
..|-.|+.+|. +....|.++|..|... .||.+.+|++|.+
T Consensus 11 L~CP~ck~~L~-----~~~~~g~LvC~~c~~~-----------------------YPI~dGIPvmL~~ 50 (67)
T 2jny_A 11 LACPKDKGPLR-----YLESEQLLVNERLNLA-----------------------YRIDDGIPVLLID 50 (67)
T ss_dssp CBCTTTCCBCE-----EETTTTEEEETTTTEE-----------------------EEEETTEECCCSS
T ss_pred hCCCCCCCcCe-----EeCCCCEEEcCCCCcc-----------------------ccCCCCEeeeChh
Confidence 56777777763 2334678888877433 6888999999876
No 91
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=72.46 E-value=3.9 Score=27.97 Aligned_cols=44 Identities=18% Similarity=0.413 Sum_probs=32.9
Q ss_pred eeecCCCCCCCCCceeecCCccccccccccccCCcCcccCCcccCC
Q 019740 10 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTN 55 (336)
Q Consensus 10 F~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~pkC~~C~~~I~~~ 55 (336)
+.|..|...+.+- ....=|..||..|..+ ....|..|++.+...
T Consensus 7 ~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~-~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 7 LRCQQCQAEAKCP-KLLPCLHTLCSGCLEA-SGMQCPICQAPWPLG 50 (56)
T ss_dssp SSCSSSCSSCBCC-SCSTTSCCSBTTTCSS-SSSSCSSCCSSSSCC
T ss_pred CCceEeCCccCCe-EEcCCCCcccHHHHcc-CCCCCCcCCcEeecC
Confidence 5688887777653 3334678899999876 567899999988754
No 92
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.86 E-value=2 Score=30.55 Aligned_cols=47 Identities=17% Similarity=0.379 Sum_probs=33.8
Q ss_pred CCeeecCCCCCCCCCceeecCCcccccccccccc-----CCcCcccCCcccCC
Q 019740 8 ECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH-----HPKCDVCQNFIPTN 55 (336)
Q Consensus 8 ~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~-----~pkC~~C~~~I~~~ 55 (336)
+=+.|..|...+.+. ....=|..||..|..+.. ...|..|+++|..+
T Consensus 19 ~~~~C~IC~~~~~~~-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 19 EEVICPICLDILQKP-VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCBCTTTCSBCSSE-EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred cCCEeccCCcccCCe-EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 346788888877653 333668889999987654 34799998888754
No 93
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.24 E-value=1.7 Score=31.17 Aligned_cols=47 Identities=15% Similarity=0.362 Sum_probs=34.2
Q ss_pred CeeecCCCCCCCCCceeecCCcccccccccccc--CCcCcccCCcccCC
Q 019740 9 CFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--HPKCDVCQNFIPTN 55 (336)
Q Consensus 9 CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~--~pkC~~C~~~I~~~ 55 (336)
-+.|..|...+.+......=|..||..|..+.. ...|..|++.|...
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 15 YILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 467888888876633333568899999986543 56899999988764
No 94
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.17 E-value=1.6 Score=30.66 Aligned_cols=47 Identities=21% Similarity=0.578 Sum_probs=34.7
Q ss_pred CCeeecCCCCCCCCCceeecCCcccccccccccc---CCcCcccCCcccCC
Q 019740 8 ECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPTN 55 (336)
Q Consensus 8 ~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~---~pkC~~C~~~I~~~ 55 (336)
+=+.|..|...+.+. ....=|..||..|..+.. ...|..|++.|..+
T Consensus 14 ~~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSP-KQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCEECTTTCCEESSC-CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred cCCCCCCCChHhcCe-eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 457899998877653 334668899999987644 45799999988764
No 95
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=65.79 E-value=2.6 Score=30.46 Aligned_cols=48 Identities=23% Similarity=0.397 Sum_probs=36.0
Q ss_pred CCCeeecCCCCCCCCCceeecCCcccccccccccc---CCcCcccCCcccCC
Q 019740 7 PECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPTN 55 (336)
Q Consensus 7 ~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~---~pkC~~C~~~I~~~ 55 (336)
++-|.|..|...+.+ .....-|..||..|..+.+ ...|..|++++...
T Consensus 6 ~~~~~C~IC~~~~~~-Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELMKD-PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCCSS-EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred cccCCCCCccccccC-CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 456889999888865 3445689999999986543 45788888888754
No 96
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=65.57 E-value=1.3 Score=32.57 Aligned_cols=40 Identities=13% Similarity=0.280 Sum_probs=27.9
Q ss_pred CccCCCCccCCCCCceEEcCCCceeccchhhhcccCCCCCCchhhHHHHHHhhccceeccccccchhc
Q 019740 82 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVE 149 (336)
Q Consensus 82 F~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~~C~~c~~~I~~f~~glg~~i~~~~p~~lV~ 149 (336)
..|-.|+.+|. +...+|.++|..|... .||.+.+|.+|.+
T Consensus 9 L~CP~ck~~L~-----~~~~~~~LiC~~cg~~-----------------------YPI~dGIPvmL~~ 48 (68)
T 2hf1_A 9 LVCPLCKGPLV-----FDKSKDELICKGDRLA-----------------------FPIKDGIPMMLES 48 (68)
T ss_dssp CBCTTTCCBCE-----EETTTTEEEETTTTEE-----------------------EEEETTEECCCGG
T ss_pred eECCCCCCcCe-----EeCCCCEEEcCCCCcE-----------------------ecCCCCeeeeChh
Confidence 45777777763 2333677888877433 6888999999876
No 97
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=64.73 E-value=2.5 Score=44.50 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=29.3
Q ss_pred hhhhHHHHHHHHHHHhc-C-CCCCCcchhhhHHHHHHHHhhhc
Q 019740 226 TGSILAHEMMHAWLRLK-G-YPNLRPDVEEGICQVLAHMWLES 266 (336)
Q Consensus 226 ~~~~lahe~~ha~l~~~-g-~~~l~~~veeg~cq~~a~~wl~~ 266 (336)
...++|||++|-|.--. . -.--+..+-||+...+++++++.
T Consensus 259 ~~~viaHElaHqWfGnlVT~~~W~dlWLnEGfA~y~~~~~~~~ 301 (780)
T 1z5h_A 259 SANVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDT 301 (780)
T ss_dssp HHHHHHHHHHHTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccCCcccccccHHHHHHHHHHHHHH
Confidence 34899999999996320 0 00123678999999999998764
No 98
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=64.56 E-value=1.5 Score=32.28 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=28.6
Q ss_pred CCccCCCCccCCCCCceEEcCCCceeccchhhhcccCCCCCCchhhHHHHHHhhccceeccccccchhc
Q 019740 81 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVE 149 (336)
Q Consensus 81 CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~~C~~c~~~I~~f~~glg~~i~~~~p~~lV~ 149 (336)
=..|-.|+.+|. +....|.++|..|... .||.+.+|.+|.+
T Consensus 8 iL~CP~ck~~L~-----~~~~~~~LiC~~cg~~-----------------------YPI~dGIPvmL~~ 48 (68)
T 2jr6_A 8 ILVCPVTKGRLE-----YHQDKQELWSRQAKLA-----------------------YPIKDGIPYMLEN 48 (68)
T ss_dssp CCBCSSSCCBCE-----EETTTTEEEETTTTEE-----------------------EEEETTEECCCTT
T ss_pred heECCCCCCcCe-----EeCCCCEEEcCCCCcE-----------------------ecCCCCeeeeChh
Confidence 356777877773 2334677888877433 6888999999876
No 99
>3oue_A Cytochrome C family protein; multiheme cytochrome-C, electron transfer, Fe reduction, GEO sulfurreducens, cytochrome C7 (C3) fold; HET: HEM; 2.15A {Geobacter sulfurreducens}
Probab=62.37 E-value=2.1 Score=36.46 Aligned_cols=108 Identities=12% Similarity=0.296 Sum_probs=58.7
Q ss_pred eecCCCCCCCCCc-------eeecCCcccccccccc--ccCC--cCcccCCcccCCCCceEEEe---eecccccccCCCC
Q 019740 11 RCHSCNLPITDVE-------FSMSGNRPYHKHCYKE--QHHP--KCDVCQNFIPTNSAGLIEYR---AHPFWLQKYCPSH 76 (336)
Q Consensus 11 ~C~~C~~~L~~~~-------F~~~dg~~yC~~CY~~--~~~p--kC~~C~~~I~~~~~g~i~~~---~~~fW~qkyCp~H 76 (336)
.|..|...+.... +......-+|..|... .|.+ .|..|...+.+.+ |.+. +..++ ++.
T Consensus 29 ~C~~CH~~~~~~~~g~~~~t~a~~~~~~~C~~CH~g~~af~~~~~C~~CH~~~~~~~---i~~~~~~~~V~F-----~H~ 100 (158)
T 3oue_A 29 KCNECHTKLFAYKAGAKRFTMADMDKGKSCGACHNGKDAFSSASDCGKCHPGLKPAK---LTYKTSVGEAYF-----DHD 100 (158)
T ss_dssp CGGGTBTTTBCSSSCCCCCCHHHHHTTCGGGGTBSSSSBCCTTSCHHHHCGGGCCCC---EEEEETTEEEEE-----CHH
T ss_pred ChhhhccChhcccccccccccccCCCCCchhhhcCCcccCChhhhchhhhhcccccc---eEeecCCCCccC-----Chh
Confidence 6778877664432 2222344689999973 3544 6999988655442 4442 21211 111
Q ss_pred cCCCCCccCCCCccCCCC----CceEEcC-CCceeccchhhhcccCC--CCCCchhh
Q 019740 77 ERDGTPRCCSCERMEPRD----TKYLSLD-DGRKLCLECLDSAIMDT--HECQPLYL 126 (336)
Q Consensus 77 ~H~~CF~C~~C~~~l~~~----~~f~~~~-dG~~yC~~C~~~~v~~~--~~C~~c~~ 126 (336)
.|..=+.|..|...+-.. ..+.+.+ ..-.+|..|++-..-++ ..|..|++
T Consensus 101 ~H~~~~~C~~CH~~v~~~~~~~~~~tm~~~~~gk~Cg~CH~gk~Af~~~~~C~~CHk 157 (158)
T 3oue_A 101 IHLSMFKCADCHTKVFKYRKGSAPATMADMEKGKSCGVCHNGKDAFSVADDCVKCHN 157 (158)
T ss_dssp HHHTTCCGGGTBTTTBCSSTTSSCCCHHHHHTTCGGGGTBTTTSBCCSSSCGGGTEE
T ss_pred HhCCCCChhhhccchhhcccCCCCcchhhhhccChhHhhcCCCccCCCcccHHHHcc
Confidence 153348999999865211 1121100 11258999997433333 37887753
No 100
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=62.27 E-value=4.1 Score=29.30 Aligned_cols=45 Identities=18% Similarity=0.377 Sum_probs=30.7
Q ss_pred CeeecCCCCCCCCCceeecCCcccccccccccc---------CCcCcccCCcccC
Q 019740 9 CFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---------HPKCDVCQNFIPT 54 (336)
Q Consensus 9 CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~---------~pkC~~C~~~I~~ 54 (336)
=+.|..|...+.+. ....=|..||..|..+.. ...|..|+..+..
T Consensus 12 ~~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 12 EVTCPICLELLTEP-LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCEETTTTEECSSC-CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCCcCCCcccCCe-eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 47889998877652 233567889998887643 3467777777654
No 101
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea}
Probab=62.26 E-value=2.8 Score=42.72 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHHHhc-CCC-CCCcchhhhHHHHHHHHhhhc
Q 019740 227 GSILAHEMMHAWLRLK-GYP-NLRPDVEEGICQVLAHMWLES 266 (336)
Q Consensus 227 ~~~lahe~~ha~l~~~-g~~-~l~~~veeg~cq~~a~~wl~~ 266 (336)
..++|||++|-|.--. .-. --+..+-||+...++++|++.
T Consensus 295 ~~viaHElaHqWfGnlVT~~~W~dlWLnEGfAtY~e~~~~~~ 336 (605)
T 3cia_A 295 VNLIAHELAHSWSGNLVTNESWRDLWLNEGFTSYVENRIMEA 336 (605)
T ss_dssp THHHHHHHHHTTBTTTEEESSTTSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccCcchHhHHHHHHHHHHHHHHHHH
Confidence 3799999999996431 111 124789999999999999875
No 102
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.82 E-value=3.5 Score=29.84 Aligned_cols=46 Identities=20% Similarity=0.476 Sum_probs=32.3
Q ss_pred CeeecCCCCCCCCCceeecCCcccccccccccc--------CCcCcccCCcccCC
Q 019740 9 CFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--------HPKCDVCQNFIPTN 55 (336)
Q Consensus 9 CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~--------~pkC~~C~~~I~~~ 55 (336)
=+.|..|...+.+. ....=|..||..|..+.. ...|..|+..+..+
T Consensus 19 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 19 EVTCPICLELLTQP-LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCTTTCSCCSSC-BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred CCCCCCCCcccCCc-eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 46788888877653 333567889999986532 56788888887753
No 103
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=60.58 E-value=4.3 Score=31.84 Aligned_cols=20 Identities=30% Similarity=0.312 Sum_probs=16.0
Q ss_pred CChhhhhhhHHHHHHHHHHH
Q 019740 221 LPRLLTGSILAHEMMHAWLR 240 (336)
Q Consensus 221 lp~~~~~~~lahe~~ha~l~ 240 (336)
|..--..+|||||++|.-.+
T Consensus 78 l~~~El~aVlaHElgH~~~~ 97 (107)
T 3cqb_A 78 MTRDEAEAVLAHEVSHIANG 97 (107)
T ss_dssp SCHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHCC
Confidence 56667889999999997643
No 104
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=58.89 E-value=2.7 Score=45.02 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHHhc-CCCC-CCcchhhhHHHHHHHHhhhc
Q 019740 227 GSILAHEMMHAWLRLK-GYPN-LRPDVEEGICQVLAHMWLES 266 (336)
Q Consensus 227 ~~~lahe~~ha~l~~~-g~~~-l~~~veeg~cq~~a~~wl~~ 266 (336)
..++|||++|-|.--- .... =+..+-||+...++++|++.
T Consensus 317 ~~viaHElAHqWFGnlVT~~~W~dlWLnEGFAty~e~~~~~~ 358 (909)
T 4fke_A 317 VTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYLGADH 358 (909)
T ss_dssp HHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcCeecccccCcceeehHHHHHHHHHHHHh
Confidence 3589999999996320 0111 13568899999999999875
No 105
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=58.81 E-value=4.9 Score=31.41 Aligned_cols=30 Identities=17% Similarity=0.493 Sum_probs=17.0
Q ss_pred eeecCCCCCCCCCceeecCCccccccccccc
Q 019740 10 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQ 40 (336)
Q Consensus 10 F~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~ 40 (336)
|.|..|...+.. .....=|..||..|..+.
T Consensus 16 ~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~~~ 45 (115)
T 3l11_A 16 CQCGICMEILVE-PVTLPCNHTLCKPCFQST 45 (115)
T ss_dssp HBCTTTCSBCSS-CEECTTSCEECHHHHCCC
T ss_pred CCCccCCcccCc-eeEcCCCCHHhHHHHHHH
Confidence 567777666644 222344666777766543
No 106
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=56.51 E-value=3 Score=31.74 Aligned_cols=45 Identities=16% Similarity=0.332 Sum_probs=29.2
Q ss_pred eeecCCCCCCCCCceeecCCcccccccccccc--CCcCcccCCcccC
Q 019740 10 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--HPKCDVCQNFIPT 54 (336)
Q Consensus 10 F~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~--~pkC~~C~~~I~~ 54 (336)
+.|..|...+.+......=|..||..|..+.. ...|..|+..+..
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 23 LRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 56888877776532222567888888876532 3567777777764
No 107
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Probab=56.25 E-value=3.4 Score=42.41 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHHHHhc-CCC-CCCcchhhhHHHHHHHHhhhc
Q 019740 227 GSILAHEMMHAWLRLK-GYP-NLRPDVEEGICQVLAHMWLES 266 (336)
Q Consensus 227 ~~~lahe~~ha~l~~~-g~~-~l~~~veeg~cq~~a~~wl~~ 266 (336)
..++|||++|-|.--. .-. --+..+-||+...++++|++.
T Consensus 296 ~~viaHElAHqWfGnlVT~~~W~dlWLnEGfAtY~e~~~~~~ 337 (632)
T 2xq0_A 296 IDVIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYLERRIIGA 337 (632)
T ss_dssp THHHHHHHHHTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccCCcchhhHHHHHHHHHHHHHHHH
Confidence 4799999999996421 000 123678999999999999875
No 108
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.18 E-value=5.8 Score=28.13 Aligned_cols=46 Identities=20% Similarity=0.425 Sum_probs=33.4
Q ss_pred CCeeecCCCCCCCCCceeecCCccccccccccc--cCCcCcccCCcccC
Q 019740 8 ECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQ--HHPKCDVCQNFIPT 54 (336)
Q Consensus 8 ~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~--~~pkC~~C~~~I~~ 54 (336)
+-+.|..|...+.+. ....=|..||..|..+. ....|..|++.|..
T Consensus 14 ~~~~C~IC~~~~~~~-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCVHP-VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCSSE-EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCccCCcccCCC-EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 356788888877653 33356888999998753 34679999998864
No 109
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=55.62 E-value=4.7 Score=41.25 Aligned_cols=42 Identities=24% Similarity=0.322 Sum_probs=30.6
Q ss_pred hhhhhHHHHHHHHHHH--hc--CC--CC-------CCcchhhhHHHHHHHHhhhc
Q 019740 225 LTGSILAHEMMHAWLR--LK--GY--PN-------LRPDVEEGICQVLAHMWLES 266 (336)
Q Consensus 225 ~~~~~lahe~~ha~l~--~~--g~--~~-------l~~~veeg~cq~~a~~wl~~ 266 (336)
.+.+++|||+.|.|.- +. .. .+ -...+-||+-+.++.+|+..
T Consensus 266 ~~~~liaHE~~H~W~g~~i~p~~~~~~d~~~~~~~~~lWl~EG~t~Y~~~l~~~r 320 (597)
T 4fgm_A 266 TFLSLCCHEYFHSWNIKTLKPKAFLPYQLEKESYTEQLWFYEGMTSYFDDYLLHT 320 (597)
T ss_dssp HHHHHHHHHHHHTTBTTTBCBGGGSSCCCSSCCCCSTHHHHTHHHHHHHHHHHHH
T ss_pred chhhhHhhhhheeecccccccccccccccccccccccchhhhhHHHHHHHHHHHH
Confidence 3578999999999943 32 11 01 13577999999999999865
No 110
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=55.40 E-value=5.8 Score=32.25 Aligned_cols=44 Identities=16% Similarity=0.506 Sum_probs=29.7
Q ss_pred eeecCCCCCCCCCceeecCCccccccccccc--cCCcCcccCCcccC
Q 019740 10 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQ--HHPKCDVCQNFIPT 54 (336)
Q Consensus 10 F~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~--~~pkC~~C~~~I~~ 54 (336)
+.|..|...+.+ .....-|..||..|..+. ....|..|.++|..
T Consensus 54 ~~C~iC~~~~~~-~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYFIE-AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBCSS-EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CCCcccCcccCC-ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 568888877765 334456888888887542 34567777777754
No 111
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=55.17 E-value=4.6 Score=26.84 Aligned_cols=46 Identities=22% Similarity=0.421 Sum_probs=30.8
Q ss_pred CeeecCCCCCCCC--Cce-eecCCcccccccccccc--CCcCcccCCcccC
Q 019740 9 CFRCHSCNLPITD--VEF-SMSGNRPYHKHCYKEQH--HPKCDVCQNFIPT 54 (336)
Q Consensus 9 CF~C~~C~~~L~~--~~F-~~~dg~~yC~~CY~~~~--~pkC~~C~~~I~~ 54 (336)
-..|..|...+.+ ... ...=|..||..|..+.. ...|..|++.|.+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 3567888887754 122 23457889999986532 3678889888753
No 112
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=55.17 E-value=9.5 Score=29.91 Aligned_cols=11 Identities=18% Similarity=0.293 Sum_probs=6.2
Q ss_pred CCceeccchhh
Q 019740 102 DGRKLCLECLD 112 (336)
Q Consensus 102 dG~~yC~~C~~ 112 (336)
.|..+|..|..
T Consensus 93 ~g~W~C~~C~~ 103 (111)
T 2ysm_A 93 TNGWKCKNCRI 103 (111)
T ss_dssp SSCCCCHHHHC
T ss_pred CCCcCCcCCcC
Confidence 45566666643
No 113
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=53.55 E-value=5.3 Score=28.72 Aligned_cols=45 Identities=18% Similarity=0.400 Sum_probs=31.9
Q ss_pred CeeecCCCCCCCCCceeec-CCccccccccccccC----CcCcccCCcccC
Q 019740 9 CFRCHSCNLPITDVEFSMS-GNRPYHKHCYKEQHH----PKCDVCQNFIPT 54 (336)
Q Consensus 9 CF~C~~C~~~L~~~~F~~~-dg~~yC~~CY~~~~~----pkC~~C~~~I~~ 54 (336)
=+.|..|...+.+ ..... =|..||..|..+... ..|..|++++..
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 15 ELLCLICKDIMTD-AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGSCSSSCCCCTT-CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCcCCChHHhC-CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 3678888887765 33344 488999999876442 579999887554
No 114
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=53.23 E-value=7.6 Score=30.54 Aligned_cols=60 Identities=12% Similarity=0.270 Sum_probs=40.3
Q ss_pred CCCeeecCCCCCCCCCceeecCCccccccccccc-cCCcCcccCCcccCCCCceEEEee-ecccccccCCCCcCCCCCcc
Q 019740 7 PECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQ-HHPKCDVCQNFIPTNSAGLIEYRA-HPFWLQKYCPSHERDGTPRC 84 (336)
Q Consensus 7 ~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~-~~pkC~~C~~~I~~~~~g~i~~~~-~~fW~qkyCp~H~H~~CF~C 84 (336)
.+ ..|..|+.+|.. .++..+|..|.... ..+.|..|++++. ++.+=| .. |.|
T Consensus 31 M~-~~CP~Cq~eL~~-----~g~~~hC~~C~~~f~~~a~CPdC~q~Le-----vLkACGAvd---------------YFC 84 (101)
T 2jne_A 31 ME-LHCPQCQHVLDQ-----DNGHARCRSCGEFIEMKALCPDCHQPLQ-----VLKACGAVD---------------YFC 84 (101)
T ss_dssp CC-CBCSSSCSBEEE-----ETTEEEETTTCCEEEEEEECTTTCSBCE-----EEEETTEEE---------------EEE
T ss_pred cc-ccCccCCCccee-----cCCEEECccccchhhccccCcchhhHHH-----HHHHhcCcc---------------hhh
Confidence 44 678999888853 34555588877642 2457999999986 455654 33 358
Q ss_pred CCCCccCC
Q 019740 85 CSCERMEP 92 (336)
Q Consensus 85 ~~C~~~l~ 92 (336)
..|+..+.
T Consensus 85 ~~chgLiS 92 (101)
T 2jne_A 85 QHGHGLIS 92 (101)
T ss_dssp TTTTEEEC
T ss_pred ccCCceee
Confidence 88877664
No 115
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=52.03 E-value=4.6 Score=31.12 Aligned_cols=43 Identities=23% Similarity=0.507 Sum_probs=24.2
Q ss_pred eeecCCCCCCCCCceeecCCccccccccccccC-----CcCcccCCccc
Q 019740 10 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHH-----PKCDVCQNFIP 53 (336)
Q Consensus 10 F~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~-----pkC~~C~~~I~ 53 (336)
+.|..|...+.+. ....=|..||..|..+... ..|..|+.+|.
T Consensus 22 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 22 LECPICLELIKEP-VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp TSCSSSCCCCSSC-CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCcccChhhcCe-EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 4677777766542 2234567777777654322 24555555544
No 116
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=51.87 E-value=3.9 Score=29.57 Aligned_cols=46 Identities=20% Similarity=0.407 Sum_probs=31.8
Q ss_pred CeeecCCCCCCCCCceeecCCcccccccccccc--------CCcCcccCCcccCC
Q 019740 9 CFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--------HPKCDVCQNFIPTN 55 (336)
Q Consensus 9 CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~--------~pkC~~C~~~I~~~ 55 (336)
=+.|..|...+.+. ....=|..||..|..+.. ...|..|+..+..+
T Consensus 19 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 19 EVTCPICLELLKEP-VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTSCTTTCSCCSSC-EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CCCCcCCChhhCcc-eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 46788888877653 234567889998886521 45788888887654
No 117
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=51.85 E-value=6.7 Score=27.32 Aligned_cols=45 Identities=16% Similarity=0.434 Sum_probs=32.3
Q ss_pred eeecCCCCCCCCCceeecCCccccccccccc--cCCcCcccCCcccC
Q 019740 10 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQ--HHPKCDVCQNFIPT 54 (336)
Q Consensus 10 F~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~--~~pkC~~C~~~I~~ 54 (336)
..|..|...+.+......=|..||..|..+. ....|..|+..+..
T Consensus 6 ~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 3578888877653344456888999998652 34689999998864
No 118
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.58 E-value=4.4 Score=29.56 Aligned_cols=45 Identities=20% Similarity=0.521 Sum_probs=32.9
Q ss_pred CeeecCCCCCCCCCceeecCCcccccccccccc--CCcCcccCCcccC
Q 019740 9 CFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--HPKCDVCQNFIPT 54 (336)
Q Consensus 9 CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~--~pkC~~C~~~I~~ 54 (336)
=+.|..|...+.+ .....=|..||..|..+.+ ...|..|++++..
T Consensus 15 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 15 PFRCFICRQAFQN-PVVTKCRHYFCESCALEHFRATPRCYICDQPTGG 61 (81)
T ss_dssp CSBCSSSCSBCCS-EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred CCCCcCCCchhcC-eeEccCCCHhHHHHHHHHHHCCCcCCCcCccccc
Confidence 4678888888765 3345568899999986543 4679999998863
No 119
>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex, metal-binding, zinc-depending, metalloprotease, metalloproteinase/inhibitor complex; HET: WR2; 1.05A {Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A 3gbo_A
Probab=51.56 E-value=8.9 Score=33.17 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=18.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHH
Q 019740 214 AILILYGLPRLLTGSILAHEMMHAW 238 (336)
Q Consensus 214 ~ilvl~glp~~~~~~~lahe~~ha~ 238 (336)
+|...++-..+.+..++||||+|.+
T Consensus 124 gi~~~~~~~~~~~a~~~AHElGH~l 148 (202)
T 2w15_A 124 GVVRDHSKNNLWVAVTMAHELGHNL 148 (202)
T ss_dssp EEEECCCSSHHHHHHHHHHHHHHHT
T ss_pred eEEecCCCchhHHHHHHHHHHhhhc
Confidence 4555555445678899999999975
No 120
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=51.46 E-value=9.7 Score=27.30 Aligned_cols=46 Identities=11% Similarity=0.135 Sum_probs=27.6
Q ss_pred CccCCCCccCCCCCceEEcCCCceeccchhhhcccCCCCCCchhhH
Q 019740 82 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLE 127 (336)
Q Consensus 82 F~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~~C~~c~~~ 127 (336)
+.|..|...+........+.=|..||..|..+.+.....|--|..+
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~ 61 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKS 61 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCC
T ss_pred CCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCc
Confidence 5677776666433444444567778888877665444555555444
No 121
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=51.00 E-value=7.4 Score=28.63 Aligned_cols=41 Identities=17% Similarity=0.278 Sum_probs=28.7
Q ss_pred CCccCCCCccCCCCCceEEcCCCceeccchhhhcccCCCCCCchhhHHHHHHhhccceeccccccchhc
Q 019740 81 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVE 149 (336)
Q Consensus 81 CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~~C~~c~~~I~~f~~glg~~i~~~~p~~lV~ 149 (336)
=..|-.|+.+|. +...+|.++|..|... .||.+.+|.+|.+
T Consensus 8 iL~CP~ck~~L~-----~~~~~~~LiC~~cg~~-----------------------YPI~dGIPvmL~~ 48 (70)
T 2js4_A 8 ILVCPVCKGRLE-----FQRAQAELVCNADRLA-----------------------FPVRDGVPIMLEA 48 (70)
T ss_dssp CCBCTTTCCBEE-----EETTTTEEEETTTTEE-----------------------EEEETTEECCCGG
T ss_pred heECCCCCCcCE-----EeCCCCEEEcCCCCce-----------------------ecCCCCeeeeChh
Confidence 356777877773 2333677888877433 6888999999876
No 122
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=50.82 E-value=5.5 Score=28.05 Aligned_cols=29 Identities=14% Similarity=0.283 Sum_probs=23.8
Q ss_pred eecCCCCCCCCCceeecCCcccc-cccccc
Q 019740 11 RCHSCNLPITDVEFSMSGNRPYH-KHCYKE 39 (336)
Q Consensus 11 ~C~~C~~~L~~~~F~~~dg~~yC-~~CY~~ 39 (336)
.|..|+..+...+-+.+||+.|| +.|...
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACADG 38 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHHT
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHcc
Confidence 47889998887788889999999 677653
No 123
>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9 PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A
Probab=50.40 E-value=9.4 Score=33.05 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=17.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHH
Q 019740 214 AILILYGLPRLLTGSILAHEMMHAW 238 (336)
Q Consensus 214 ~ilvl~glp~~~~~~~lahe~~ha~ 238 (336)
+|...++-..+.+..++||||+|-+
T Consensus 124 gi~~~~~~~~~~~a~~~AHElGHnl 148 (202)
T 1atl_A 124 GIVQDHSPINLLMGVTMAHELGHNL 148 (202)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred ceEeccCCcceeeEEEehhhhcccc
Confidence 3444444445667889999999985
No 124
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=49.48 E-value=12 Score=26.77 Aligned_cols=47 Identities=21% Similarity=0.474 Sum_probs=32.1
Q ss_pred CeeecCCCCCCCCCc--eeecCCccccccccccc--cCCcCcccCCcccCC
Q 019740 9 CFRCHSCNLPITDVE--FSMSGNRPYHKHCYKEQ--HHPKCDVCQNFIPTN 55 (336)
Q Consensus 9 CF~C~~C~~~L~~~~--F~~~dg~~yC~~CY~~~--~~pkC~~C~~~I~~~ 55 (336)
-+.|..|...+.... ....=+..||..|..+. ....|..|++.|...
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 467888877776432 22345788999998653 346788898888764
No 125
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=49.31 E-value=10 Score=27.33 Aligned_cols=42 Identities=21% Similarity=0.396 Sum_probs=31.4
Q ss_pred eeecCCCCCCCCCceeecCCcc-ccccccccccCCcCcccCCcccC
Q 019740 10 FRCHSCNLPITDVEFSMSGNRP-YHKHCYKEQHHPKCDVCQNFIPT 54 (336)
Q Consensus 10 F~C~~C~~~L~~~~F~~~dg~~-yC~~CY~~~~~pkC~~C~~~I~~ 54 (336)
+.|..|...+.+..+ ..=|.. +|..|..+. .+|..|.++|..
T Consensus 25 ~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~--~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 25 KLCKICMDRNIAIVF-VPCGHLVTCKQCAEAV--DKCPMCYTVITF 67 (74)
T ss_dssp TBCTTTSSSBCCEEE-ETTCCBCCCHHHHTTC--SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCEEE-cCCCChhHHHHhhhcC--ccCCCcCcCccC
Confidence 457778776655333 355777 999998876 899999999975
No 126
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=49.13 E-value=8 Score=29.95 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=24.0
Q ss_pred CCCeeecCCCCCCCCCceeecCCcccccccccccc--CCcCcccCCcccC
Q 019740 7 PECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--HPKCDVCQNFIPT 54 (336)
Q Consensus 7 ~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~--~pkC~~C~~~I~~ 54 (336)
++-|.|..|...+.+ ......|..||+.|-.+.. ...|..|++++..
T Consensus 27 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD-PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSS-EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccC-CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 445666666665544 2333456666666543311 3445555555543
No 127
>1qua_A Acutolysin-C, hemorrhagin III; metalloprotease, hemorrhagic toxin, snake venom proteinase; 2.20A {Deinagkistrodon acutus} SCOP: d.92.1.9
Probab=48.53 E-value=11 Score=32.55 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=17.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHH
Q 019740 214 AILILYGLPRLLTGSILAHEMMHAW 238 (336)
Q Consensus 214 ~ilvl~glp~~~~~~~lahe~~ha~ 238 (336)
+|...++-..+.+..++||||+|.+
T Consensus 123 gi~~~~~~~~~~~a~~~AHElGH~l 147 (197)
T 1qua_A 123 GLIQDHSAIPLLMAVTMAHELGHNL 147 (197)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred ceEeccCCcchHHHHHHHHHHHHhc
Confidence 4444555445567899999999975
No 128
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.44 E-value=3.9 Score=28.85 Aligned_cols=45 Identities=16% Similarity=0.405 Sum_probs=32.7
Q ss_pred CeeecCCCCCCCCCceeecCCcccccccccccc--CCcCcccCCcccCC
Q 019740 9 CFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--HPKCDVCQNFIPTN 55 (336)
Q Consensus 9 CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~--~pkC~~C~~~I~~~ 55 (336)
-+.|..|...+.. ....=|..||..|..+.. ...|..|+++|...
T Consensus 15 ~~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 15 EEECCICMDGRAD--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCSSSCCSCCS--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCeeCCcCccC--cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 4678888777766 444567889999987543 46788888888754
No 129
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=48.11 E-value=4.7 Score=33.70 Aligned_cols=44 Identities=11% Similarity=0.314 Sum_probs=22.2
Q ss_pred eeecCCCCCCCCCceeecCCcccccccccccc---CCcCcccCCccc
Q 019740 10 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIP 53 (336)
Q Consensus 10 F~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~---~pkC~~C~~~I~ 53 (336)
+.|..|...+.+......=|..||..|..+.. ...|..|+.+|.
T Consensus 55 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 55 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 45666666655421112446666666665422 234555555553
No 130
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=48.10 E-value=5.2 Score=30.95 Aligned_cols=45 Identities=16% Similarity=0.351 Sum_probs=26.6
Q ss_pred CeeecCCCCCCCCCceee-cCCcccccccccccc--CCcCcccCCcccC
Q 019740 9 CFRCHSCNLPITDVEFSM-SGNRPYHKHCYKEQH--HPKCDVCQNFIPT 54 (336)
Q Consensus 9 CF~C~~C~~~L~~~~F~~-~dg~~yC~~CY~~~~--~pkC~~C~~~I~~ 54 (336)
-+.|..|...+.+ .... .=|..||..|..+.. ...|..|+..+..
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFID-ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCCccCChHHhC-cCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 3567777776655 3333 557777777765432 2456666665543
No 131
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=47.98 E-value=8 Score=28.35 Aligned_cols=40 Identities=18% Similarity=0.255 Sum_probs=27.5
Q ss_pred CccCCCCccCCCCCceEEcCCCceeccchhhhcccCCCCCCchhhHHHHHHhhccceeccccccchhc
Q 019740 82 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVE 149 (336)
Q Consensus 82 F~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~~C~~c~~~I~~f~~glg~~i~~~~p~~lV~ 149 (336)
..|-.|+.+|. +...+|.++|..|... .||.+.+|.+|.+
T Consensus 9 L~CP~ck~~L~-----~~~~~~~LiC~~cg~~-----------------------YPI~dGIPvmL~~ 48 (69)
T 2pk7_A 9 LACPICKGPLK-----LSADKTELISKGAGLA-----------------------YPIRDGIPVMLES 48 (69)
T ss_dssp CCCTTTCCCCE-----ECTTSSEEEETTTTEE-----------------------EEEETTEECCCGG
T ss_pred eeCCCCCCcCe-----EeCCCCEEEcCCCCcE-----------------------ecCcCCeeeeChh
Confidence 56777777763 2223577888777433 6888999999876
No 132
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}
Probab=47.85 E-value=6.1 Score=35.67 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=19.1
Q ss_pred EEEEecCCC-----hhhhhhhHHHHHHHHHH
Q 019740 214 AILILYGLP-----RLLTGSILAHEMMHAWL 239 (336)
Q Consensus 214 ~ilvl~glp-----~~~~~~~lahe~~ha~l 239 (336)
.|+|-.||= .--..+|||||++|.-.
T Consensus 83 ~I~v~~gLl~~l~~~~ELaaVLaHElgH~~~ 113 (253)
T 3c37_A 83 RVYVHTGLLKAADNETELAGVLAHEINHAVA 113 (253)
T ss_dssp EEEEEHHHHHHCSSHHHHHHHHHHHHHHHHT
T ss_pred eEEeeHHHHhhCCCHHHHHHHHHHHHHHHHC
Confidence 566777753 34477899999999853
No 133
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=47.30 E-value=18 Score=23.76 Aligned_cols=45 Identities=20% Similarity=0.278 Sum_probs=26.0
Q ss_pred CccCCCCccCCCCCceEEcC-CCceeccchhhhcccCCCCCCchhh
Q 019740 82 PRCCSCERMEPRDTKYLSLD-DGRKLCLECLDSAIMDTHECQPLYL 126 (336)
Q Consensus 82 F~C~~C~~~l~~~~~f~~~~-dG~~yC~~C~~~~v~~~~~C~~c~~ 126 (336)
..|..|...+..+.....+. =|..+|..|..+.+.....|--|..
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~ 51 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRL 51 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCC
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCC
Confidence 45666766665444334443 5677888887766544455554443
No 134
>1bud_A Protein (acutolysin A); metalloproteinase, snake venom, MMP, toxin; 1.90A {Deinagkistrodon acutus} SCOP: d.92.1.9 PDB: 1bsw_A
Probab=47.27 E-value=11 Score=32.32 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=17.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHH
Q 019740 214 AILILYGLPRLLTGSILAHEMMHAW 238 (336)
Q Consensus 214 ~ilvl~glp~~~~~~~lahe~~ha~ 238 (336)
+|.-.++-..+.+..++||||+|.+
T Consensus 121 gi~~~~~~~~~~~a~~~AHElGH~l 145 (197)
T 1bud_A 121 GVIQDHSSVNRLVAITLAHEMAHNL 145 (197)
T ss_dssp EEEECCCSSHHHHHHHHHHHHHHHT
T ss_pred ceEeecCCchhHHHHHHHHHHhhhc
Confidence 4444444334567899999999986
No 135
>1kuf_A Atrolysin E, metalloproteinase; alpha/beta protein, hydrolase; 1.35A {Protobothrops mucrosquamatus} SCOP: d.92.1.9 PDB: 1kui_A 1kuk_A 1kug_A 1wni_A
Probab=47.14 E-value=11 Score=32.59 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=17.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHH
Q 019740 214 AILILYGLPRLLTGSILAHEMMHAW 238 (336)
Q Consensus 214 ~ilvl~glp~~~~~~~lahe~~ha~ 238 (336)
+|...++-..+.+..++||||+|.+
T Consensus 126 gi~~~~~~~~~~~a~~~AHElGH~l 150 (203)
T 1kuf_A 126 AVVKDHSSKVFMVAVTMTHELGHNL 150 (203)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred eEEecCCCcchhhHHHHHHHhhhhc
Confidence 4444444434667899999999985
No 136
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis}
Probab=46.86 E-value=4.8 Score=43.06 Aligned_cols=41 Identities=17% Similarity=0.399 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHHhc-CCCC-CCcchhhhHHHHHHHHhhhcc
Q 019740 227 GSILAHEMMHAWLRLK-GYPN-LRPDVEEGICQVLAHMWLESE 267 (336)
Q Consensus 227 ~~~lahe~~ha~l~~~-g~~~-l~~~veeg~cq~~a~~wl~~~ 267 (336)
..++|||+.|-|.--. .-.. -...+-||+...+.++|++..
T Consensus 288 ~~vIaHElAHqWfGnlVT~~~W~dlWLnEGfAty~e~~~~~~~ 330 (867)
T 2gtq_A 288 ESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSGDR 330 (867)
T ss_dssp HHHHHHHHHTTTBTTTBEESSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcEEEecccccccchHHHHHHHHHHHHHHH
Confidence 4899999999994320 0011 135789999999988887653
No 137
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ...
Probab=46.75 E-value=4.5 Score=41.21 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=28.1
Q ss_pred hhhHHHHHHHHHHHhc-CCC-CCCcchhhhHHHHHHHHhhhc
Q 019740 227 GSILAHEMMHAWLRLK-GYP-NLRPDVEEGICQVLAHMWLES 266 (336)
Q Consensus 227 ~~~lahe~~ha~l~~~-g~~-~l~~~veeg~cq~~a~~wl~~ 266 (336)
..++|||++|-|.--. .-. --+..+-||+...+++++++.
T Consensus 288 ~~viaHElAHqWfGnlVT~~~W~d~WLnEGfAty~e~~~~~~ 329 (608)
T 3u9w_A 288 SNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGR 329 (608)
T ss_dssp THHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhcCcCccccccchhHHHhHHHHHHHHHHHH
Confidence 4689999999995321 001 113567899999999888764
No 138
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=46.34 E-value=8.7 Score=29.61 Aligned_cols=47 Identities=4% Similarity=-0.032 Sum_probs=28.5
Q ss_pred CCCeeecCCCCCCCCCceeecCC-cccccccccccc--CCcCcccCCcccC
Q 019740 7 PECFRCHSCNLPITDVEFSMSGN-RPYHKHCYKEQH--HPKCDVCQNFIPT 54 (336)
Q Consensus 7 ~~CF~C~~C~~~L~~~~F~~~dg-~~yC~~CY~~~~--~pkC~~C~~~I~~ 54 (336)
++-|.|..|...+.+ ......| ..||+.|-.+.. ...|..|++++..
T Consensus 20 p~~~~CpI~~~~m~d-PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD-PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccC-CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 456778878777655 3334556 777777754322 3456666666554
No 139
>1yp1_A FII; FII hydrolase; 1.90A {Deinagkistrodon acutus}
Probab=46.30 E-value=12 Score=32.38 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=17.8
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHH
Q 019740 214 AILILYGLPRLLTGSILAHEMMHAW 238 (336)
Q Consensus 214 ~ilvl~glp~~~~~~~lahe~~ha~ 238 (336)
+|...++-..+.+..++||||+|-+
T Consensus 123 gi~~~~~~~~~~~a~~~AHElGH~l 147 (202)
T 1yp1_A 123 GIIQDFSAIPLLMAVVMAHELGHNL 147 (202)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred ceEeecCCchhHHHHHHHHHHHHhc
Confidence 4444454334567899999999985
No 140
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=46.26 E-value=5.8 Score=42.96 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHHhc-CCC-CCCcchhhhHHHHHHHHhhhc
Q 019740 227 GSILAHEMMHAWLRLK-GYP-NLRPDVEEGICQVLAHMWLES 266 (336)
Q Consensus 227 ~~~lahe~~ha~l~~~-g~~-~l~~~veeg~cq~~a~~wl~~ 266 (336)
..++|||++|-|.--- .-. --+..+-||+...+++++++.
T Consensus 365 ~~vIaHElAHqWFGnlVT~~wW~dlWLnEGFAty~e~~~~~~ 406 (967)
T 3se6_A 365 TRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNA 406 (967)
T ss_dssp HHHHHHHHGGGTBTTTEEESSGGGTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccCCCccccHHHHHHHHHHHHHHHH
Confidence 5799999999996320 001 113578999999999998765
No 141
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.98 E-value=6 Score=28.94 Aligned_cols=47 Identities=13% Similarity=0.374 Sum_probs=33.0
Q ss_pred CeeecCCCCCCCCC---ceeecCCcccccccccccc-----CCcCcccCCcccCC
Q 019740 9 CFRCHSCNLPITDV---EFSMSGNRPYHKHCYKEQH-----HPKCDVCQNFIPTN 55 (336)
Q Consensus 9 CF~C~~C~~~L~~~---~F~~~dg~~yC~~CY~~~~-----~pkC~~C~~~I~~~ 55 (336)
=+.|..|...+.+. .....=|..||..|..+.. ...|..|++++...
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred CCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 46788998887652 2233458899999987643 25788998887654
No 142
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=45.96 E-value=4.9 Score=27.94 Aligned_cols=47 Identities=11% Similarity=0.259 Sum_probs=33.0
Q ss_pred eeecCCCC-CCCCCc---eeecCCccccccccccc---cCCcCcccCCcccCCC
Q 019740 10 FRCHSCNL-PITDVE---FSMSGNRPYHKHCYKEQ---HHPKCDVCQNFIPTNS 56 (336)
Q Consensus 10 F~C~~C~~-~L~~~~---F~~~dg~~yC~~CY~~~---~~pkC~~C~~~I~~~~ 56 (336)
+.|..|.. .+.+.. ....=|..||..|..+. ....|..|++++..+.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 56788877 444322 23456899999998765 3467999999998653
No 143
>2i47_A ADAM 17; TACE-inhibitor complex, hydrolase; HET: INN KGY; 1.90A {Homo sapiens} SCOP: d.92.1.10 PDB: 3g42_A*
Probab=45.80 E-value=11 Score=34.38 Aligned_cols=20 Identities=25% Similarity=0.484 Sum_probs=15.8
Q ss_pred cC--CChhhhhhhHHHHHHHHH
Q 019740 219 YG--LPRLLTGSILAHEMMHAW 238 (336)
Q Consensus 219 ~g--lp~~~~~~~lahe~~ha~ 238 (336)
|| +|...+..++||||+|-+
T Consensus 179 ~g~~~~~~~~a~~~AHElGHnl 200 (288)
T 2i47_A 179 YGKTILTKEADLVTTHELGHNF 200 (288)
T ss_dssp TTEECCHHHHHHHHHHHHHHHT
T ss_pred cCcccchhhHHHHHHHHHHhhc
Confidence 66 455557899999999986
No 144
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=45.61 E-value=8.4 Score=28.48 Aligned_cols=47 Identities=17% Similarity=0.467 Sum_probs=32.5
Q ss_pred CeeecCCCCCCCC--Cceee-cCCcccccccccccc---CCcCcccCCcccCC
Q 019740 9 CFRCHSCNLPITD--VEFSM-SGNRPYHKHCYKEQH---HPKCDVCQNFIPTN 55 (336)
Q Consensus 9 CF~C~~C~~~L~~--~~F~~-~dg~~yC~~CY~~~~---~pkC~~C~~~I~~~ 55 (336)
=+.|..|-.++.. ..|.. .=|..||..|+.+.. ...|..|.+++...
T Consensus 11 ~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred CCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 3678888777742 23322 258889999987653 46899999988764
No 145
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=45.33 E-value=10 Score=33.71 Aligned_cols=48 Identities=8% Similarity=0.052 Sum_probs=35.1
Q ss_pred CCCeeecCCCCCCCCCceeecCCccccccccccc---cCCcCcccCCcccCC
Q 019740 7 PECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQ---HHPKCDVCQNFIPTN 55 (336)
Q Consensus 7 ~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~---~~pkC~~C~~~I~~~ 55 (336)
+.-|.|..|...+.+ ......|..||+.|-.+. ....|..|++++...
T Consensus 206 ~~~~~c~i~~~~~~d-Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 206 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp CSTTBCTTTCSBCSS-EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred CcccCCcCcCCHhcC-CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 567899999888866 444568999999997642 233488888888653
No 146
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*
Probab=45.21 E-value=6.3 Score=42.33 Aligned_cols=41 Identities=15% Similarity=0.323 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHHHhc-CCC-CCCcchhhhHHHHHHHHhhhcc
Q 019740 227 GSILAHEMMHAWLRLK-GYP-NLRPDVEEGICQVLAHMWLESE 267 (336)
Q Consensus 227 ~~~lahe~~ha~l~~~-g~~-~l~~~veeg~cq~~a~~wl~~~ 267 (336)
..++|||+.|-|.--. ... --...+-||+...+..+|++..
T Consensus 313 ~~vIAHElAHqWFGNlVT~~~W~dlWLnEGFAtY~e~~~~~~~ 355 (891)
T 3b34_A 313 ERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDL 355 (891)
T ss_dssp HHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcccchhhceehHHHHHHHHHHHHHHH
Confidence 4899999999995210 000 0134689999999988887654
No 147
>4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat, inflammation, alpha/beta motif, metalloproteinas allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo sapiens}
Probab=44.81 E-value=13 Score=32.39 Aligned_cols=25 Identities=24% Similarity=0.121 Sum_probs=17.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHH
Q 019740 214 AILILYGLPRLLTGSILAHEMMHAW 238 (336)
Q Consensus 214 ~ilvl~glp~~~~~~~lahe~~ha~ 238 (336)
+|....+...+.+..++|||++|-+
T Consensus 121 ~v~~d~~~~~~~~a~~~AHElGH~l 145 (208)
T 4dd8_A 121 AVNQDHSKNPVGVACTMAHEMGHNL 145 (208)
T ss_dssp EEEECCCSSHHHHHHHHHHHHHHHT
T ss_pred eEEecCCCChhHHHHHHHHHHHHHc
Confidence 3444445455567789999999975
No 148
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=44.72 E-value=16 Score=28.92 Aligned_cols=11 Identities=27% Similarity=0.722 Sum_probs=6.7
Q ss_pred CCceeccchhh
Q 019740 102 DGRKLCLECLD 112 (336)
Q Consensus 102 dG~~yC~~C~~ 112 (336)
.|..+|..|..
T Consensus 97 ~g~W~C~~C~~ 107 (114)
T 2kwj_A 97 EGSWSCHLCWE 107 (114)
T ss_dssp SSCCCCHHHHH
T ss_pred CCCeECccccc
Confidence 45666766644
No 149
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics, structural proteomics in europe, spine, spine-2, spine2-complexes, hydrolase; HET: NGH; NMR {Homo sapiens}
Probab=44.10 E-value=8.1 Score=32.07 Aligned_cols=16 Identities=44% Similarity=0.405 Sum_probs=12.4
Q ss_pred hhhhhHHHHHHHHHHHh
Q 019740 225 LTGSILAHEMMHAWLRL 241 (336)
Q Consensus 225 ~~~~~lahe~~ha~l~~ 241 (336)
..-.+++||++|| |-|
T Consensus 107 ~~~~v~~HEiGHa-LGL 122 (160)
T 2jsd_A 107 NLFTVAAHEFGHA-LGL 122 (160)
T ss_dssp EHHHHHHHHHHHH-HTC
T ss_pred hhHHHHHHHhHhh-hcC
Confidence 3458999999999 444
No 150
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=43.96 E-value=8.9 Score=28.60 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=33.5
Q ss_pred CCCeeecCCCCCCCCCceeecCCcccccccccccc--CCcCcccCCcccC
Q 019740 7 PECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--HPKCDVCQNFIPT 54 (336)
Q Consensus 7 ~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~--~pkC~~C~~~I~~ 54 (336)
++-|.|..|...+.+ ......|..||+.|-.+.. ...|..|++++..
T Consensus 12 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD-PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcC-CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 567889999888866 3444578899988865422 4578888777764
No 151
>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation, glycoprotein, hirschsprung diseas hydrolase, membrane, metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens} SCOP: d.92.1.0
Probab=43.03 E-value=6.3 Score=40.71 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=13.1
Q ss_pred hhhhhHHHHHHHHHH
Q 019740 225 LTGSILAHEMMHAWL 239 (336)
Q Consensus 225 ~~~~~lahe~~ha~l 239 (336)
..|+|+||||+|+|=
T Consensus 500 ~iG~vigHEi~H~FD 514 (670)
T 3dwb_A 500 GIGVVVGHELTHAFD 514 (670)
T ss_dssp THHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhccC
Confidence 468999999999984
No 152
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=41.81 E-value=7.1 Score=30.91 Aligned_cols=44 Identities=16% Similarity=0.390 Sum_probs=30.2
Q ss_pred eeecCCCCCCCCCceeecCCcccccccccccc---CCcCcccCCcccC
Q 019740 10 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPT 54 (336)
Q Consensus 10 F~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~---~pkC~~C~~~I~~ 54 (336)
+.|..|...+.+ .....=|..||..|..+.. ...|..|+.+|..
T Consensus 53 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVFR-PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCSS-EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHcC-cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 578888777764 2334568888888886533 3378888888765
No 153
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.73 E-value=35 Score=25.19 Aligned_cols=63 Identities=16% Similarity=0.166 Sum_probs=34.5
Q ss_pred CCccccccccccc----cCCcCcccCCcccCCCCceEEEeeecccccccCCCCcCCCCCccCCCCccCCCCCceEEcCCC
Q 019740 28 GNRPYHKHCYKEQ----HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDG 103 (336)
Q Consensus 28 dg~~yC~~CY~~~----~~pkC~~C~~~I~~~~~g~i~~~~~~fW~qkyCp~H~H~~CF~C~~C~~~l~~~~~f~~~~dG 103 (336)
.+.+||+.|-... ..-.|.+|++.-.+. .+| .=+ .|+.-||..|.. -+|. .+..|
T Consensus 8 ~~~~~c~~C~~~~~w~C~~c~C~vC~~~~~~~--~ll-~CD-------~C~~~yH~~Cl~-----Ppl~------~~P~g 66 (77)
T 2e6s_A 8 RNDTECDLCGGDPEKKCHSCSCRVCGGKHEPN--MQL-LCD-------ECNVAYHIYCLN-----PPLD------KVPEE 66 (77)
T ss_dssp CCCCCCTTTCSCSSSCCSSSSCSSSCCCCCST--TEE-ECS-------SSCCEEETTSSS-----SCCS------SCCCS
T ss_pred cCCccChhhcCCCCeECCCCCCcCcCCcCCCC--CEE-EcC-------CCCccccccccC-----CCcc------CCCCC
Confidence 4577888876542 112577888754333 233 222 166666766653 2332 12356
Q ss_pred -ceeccchh
Q 019740 104 -RKLCLECL 111 (336)
Q Consensus 104 -~~yC~~C~ 111 (336)
..+|..|.
T Consensus 67 ~~W~C~~C~ 75 (77)
T 2e6s_A 67 EYWYCPSCK 75 (77)
T ss_dssp SCCCCTTTC
T ss_pred CCcCCcCcc
Confidence 78998884
No 154
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=41.53 E-value=6 Score=30.28 Aligned_cols=46 Identities=17% Similarity=0.436 Sum_probs=30.9
Q ss_pred eeecCCCCCCCCCceeecCCcccccccccccc--C-CcCcccCCcccCC
Q 019740 10 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--H-PKCDVCQNFIPTN 55 (336)
Q Consensus 10 F~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~--~-pkC~~C~~~I~~~ 55 (336)
+.|..|...+.+......=|..||..|..+.. . ..|..|..++...
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 23 FRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 56888888776532224558888988886532 2 5788888887653
No 155
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=41.38 E-value=5.4 Score=29.70 Aligned_cols=44 Identities=18% Similarity=0.450 Sum_probs=29.2
Q ss_pred CCeeecCCCCCCCCCceeec-CCcccccccccccc----CCcCcccCCcc
Q 019740 8 ECFRCHSCNLPITDVEFSMS-GNRPYHKHCYKEQH----HPKCDVCQNFI 52 (336)
Q Consensus 8 ~CF~C~~C~~~L~~~~F~~~-dg~~yC~~CY~~~~----~pkC~~C~~~I 52 (336)
+-|.|..|...+.+ ..... =|..||..|..+.+ ...|..|++.+
T Consensus 12 ~~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 12 DELLCLICKDIMTD-AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTTEETTTTEECSS-CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCCCCCCChhhcC-ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 45788888877765 33344 38888888876532 24677777765
No 156
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=41.28 E-value=6.9 Score=41.86 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=30.1
Q ss_pred hhhhHHHHHHHHHHHhc-CC-CCCCcchhhhHHHHHHHHhhhcc
Q 019740 226 TGSILAHEMMHAWLRLK-GY-PNLRPDVEEGICQVLAHMWLESE 267 (336)
Q Consensus 226 ~~~~lahe~~ha~l~~~-g~-~~l~~~veeg~cq~~a~~wl~~~ 267 (336)
...++|||++|-|.--- .- ---+..+-||+...+++++++..
T Consensus 302 ~~~viaHElAHqWFGnlVT~~~W~dlWLnEGfAty~e~~~~~~~ 345 (897)
T 2xdt_A 302 ITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVT 345 (897)
T ss_dssp HHHHHHHHHHTTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCEeccCCcchhhhhHHHHHHHHHHHHHHh
Confidence 35789999999996321 00 11236789999999999998753
No 157
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.83 E-value=12 Score=26.92 Aligned_cols=43 Identities=21% Similarity=0.393 Sum_probs=30.7
Q ss_pred eeecCCCCCCCCCceeecCCcc-ccccccccccCCcCcccCCcccCC
Q 019740 10 FRCHSCNLPITDVEFSMSGNRP-YHKHCYKEQHHPKCDVCQNFIPTN 55 (336)
Q Consensus 10 F~C~~C~~~L~~~~F~~~dg~~-yC~~CY~~~~~pkC~~C~~~I~~~ 55 (336)
+.|..|...+.+..+ ..=|.. ||..|..+. .+|..|.++|...
T Consensus 26 ~~C~IC~~~~~~~~~-~pCgH~~~C~~C~~~~--~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 26 KLCKICMDRNIAIVF-VPCGHLVTCKQCAEAV--DKCPMCYTVITFK 69 (75)
T ss_dssp HSCSSSCSSCCCBCC-SSSCCCCBCHHHHHHC--SBCTTTCCBCCCC
T ss_pred CCCCcCCCCCCCEEE-ecCCCHHHHHHHhhCC--CCCccCCceecCc
Confidence 357777666655333 345677 999999753 7899999999763
No 158
>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) type IV collagenase) (92 kDa gelatinase)...; S1-prime pocket, hydrolase-hydrola inhibitor complex; HET: 4MR; 2.00A {Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A* 2ow0_A* 2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A*
Probab=38.68 E-value=11 Score=31.49 Aligned_cols=12 Identities=33% Similarity=0.293 Sum_probs=10.3
Q ss_pred hhhHHHHHHHHH
Q 019740 227 GSILAHEMMHAW 238 (336)
Q Consensus 227 ~~~lahe~~ha~ 238 (336)
-.|++||++||-
T Consensus 112 ~~va~HEiGHaL 123 (159)
T 2ovx_A 112 FLVAAHQFGHAL 123 (159)
T ss_dssp HHHHHHHHHHHT
T ss_pred hhhhhhhhhhhh
Confidence 479999999983
No 159
>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex, pathogenicity, phagosome matura; HET: RDF 211 PGE PG4; 2.60A {Mycobacterium tuberculosis}
Probab=38.46 E-value=8.2 Score=40.27 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=13.2
Q ss_pred hhhhhHHHHHHHHHH
Q 019740 225 LTGSILAHEMMHAWL 239 (336)
Q Consensus 225 ~~~~~lahe~~ha~l 239 (336)
..|+|+||||+|+|=
T Consensus 522 ~iG~vIgHEi~HgFD 536 (699)
T 3zuk_A 522 GIGAVIGHEIGHGFD 536 (699)
T ss_dssp THHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhh
Confidence 469999999999994
No 160
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=38.36 E-value=9 Score=31.81 Aligned_cols=45 Identities=18% Similarity=0.401 Sum_probs=30.4
Q ss_pred eeecCCCCCCCCCceeecCCcccccccccccc---CCcCcccCCcccCC
Q 019740 10 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPTN 55 (336)
Q Consensus 10 F~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~---~pkC~~C~~~I~~~ 55 (336)
+.|..|...+.+ .....-|..||..|..+.. ...|..|..+|...
T Consensus 79 ~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 79 FMCVCCQELVYQ-PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp TBCTTTSSBCSS-EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CEeecCChhhcC-CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 578888777755 3334567888888876533 23688888877653
No 161
>3dte_A IRRE protein; radiotolerance, gene regulation, metallopeptidase; 2.60A {Deinococcus deserti} PDB: 3dti_A 3dtk_A
Probab=38.33 E-value=21 Score=33.42 Aligned_cols=51 Identities=31% Similarity=0.265 Sum_probs=34.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHHHhcCC--C----CCC----cchhhhHHHHHHHHhh
Q 019740 214 AILILYGLPRLLTGSILAHEMMHAWLRLKGY--P----NLR----PDVEEGICQVLAHMWL 264 (336)
Q Consensus 214 ~ilvl~glp~~~~~~~lahe~~ha~l~~~g~--~----~l~----~~veeg~cq~~a~~wl 264 (336)
.|+|=..++.-..--.||||++|.+|.-... . .++ ....|-.|+.+|...|
T Consensus 84 ~I~LN~~~~~~rqrFTLAHELGHllLh~~~~~~~d~~~~~~~~~~~~~~E~eAN~FAa~LL 144 (301)
T 3dte_A 84 VILINSQVRPERQRFTLAHEISHALLLGDDDLLSDLHDEYEGDRLEQVIETLCNVGAAALL 144 (301)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCChhhHHHHHHHHHHHHHhccccccccchhhhccccchhhHHHHHHHHHHHHHh
Confidence 4666667888888899999999999875320 0 011 1345778888876665
No 162
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=38.13 E-value=10 Score=29.47 Aligned_cols=45 Identities=16% Similarity=0.338 Sum_probs=32.6
Q ss_pred eeecCCCCCCCCCceeecCCcccccccccccc---CCcCcccCCcccCC
Q 019740 10 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPTN 55 (336)
Q Consensus 10 F~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~---~pkC~~C~~~I~~~ 55 (336)
+.|..|...+.+ .....-|..||..|..+.. ...|..|+.+|...
T Consensus 24 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 24 ISCQICEHILAD-PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp TBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCcHhcC-cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 578888887765 3334678899999986532 45799999888754
No 163
>2ddf_A ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapiens} PDB: 2fv5_A* 3l0v_A* 3kme_A* 3l0t_A* 3kmc_A* 3le9_A* 3lea_A* 3lgp_A* 3o64_A* 3ewj_A* 3edz_A* 3e8r_A* 2fv9_A* 1zxc_A* 2oi0_A* 3b92_A* 2a8h_A* 1bkc_A* 3cki_A 1bkc_I* ...
Probab=37.90 E-value=12 Score=33.56 Aligned_cols=20 Identities=25% Similarity=0.484 Sum_probs=15.3
Q ss_pred cC--CChhhhhhhHHHHHHHHH
Q 019740 219 YG--LPRLLTGSILAHEMMHAW 238 (336)
Q Consensus 219 ~g--lp~~~~~~~lahe~~ha~ 238 (336)
|| +|...+..++||||+|-+
T Consensus 173 ~g~~~~~~~~a~~~AHElGHnl 194 (257)
T 2ddf_A 173 YGKTILTKEADLVTTHELGHNF 194 (257)
T ss_dssp TTEECCHHHHHHHHHHHHHHHT
T ss_pred cCcccccceeeeeeeeehhhhc
Confidence 66 444457889999999976
No 164
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=37.80 E-value=11 Score=31.55 Aligned_cols=46 Identities=17% Similarity=0.429 Sum_probs=36.3
Q ss_pred CeeecCCCCCCCCCceeecCCcccccccccccc---CCcCcccCCcccCC
Q 019740 9 CFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPTN 55 (336)
Q Consensus 9 CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~---~pkC~~C~~~I~~~ 55 (336)
=|.|..|...+.+- ....-|..||..|..+.. ..+|..|..+|..+
T Consensus 18 ~~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 18 KYECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp GGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCChhhcCc-EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 47899999888763 445679999999998754 34999999998764
No 165
>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease, hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP: d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A* 2yb9_A*
Probab=37.78 E-value=8 Score=40.03 Aligned_cols=15 Identities=27% Similarity=0.539 Sum_probs=13.2
Q ss_pred hhhhhHHHHHHHHHH
Q 019740 225 LTGSILAHEMMHAWL 239 (336)
Q Consensus 225 ~~~~~lahe~~ha~l 239 (336)
..|+|+||||+|+|-
T Consensus 523 ~iG~vigHEi~H~FD 537 (696)
T 1r1h_A 523 GIGMVIGHEITHGFD 537 (696)
T ss_dssp THHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHhh
Confidence 479999999999983
No 166
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.75 E-value=5.4 Score=27.66 Aligned_cols=47 Identities=15% Similarity=0.403 Sum_probs=31.9
Q ss_pred CCeeecCCCCCCCCC-----c-eeecCCcccccccccccc--CCcCcccCCcccC
Q 019740 8 ECFRCHSCNLPITDV-----E-FSMSGNRPYHKHCYKEQH--HPKCDVCQNFIPT 54 (336)
Q Consensus 8 ~CF~C~~C~~~L~~~-----~-F~~~dg~~yC~~CY~~~~--~pkC~~C~~~I~~ 54 (336)
+=+.|..|...+.+. . ....=|..||..|..+.+ ...|..|++.|..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 446788887776532 1 334558899999987542 4679999888753
No 167
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=37.70 E-value=5.6 Score=27.15 Aligned_cols=46 Identities=15% Similarity=0.426 Sum_probs=33.4
Q ss_pred eeecCCCCCCCCC-----c-eeecCCcccccccccccc--CCcCcccCCcccCC
Q 019740 10 FRCHSCNLPITDV-----E-FSMSGNRPYHKHCYKEQH--HPKCDVCQNFIPTN 55 (336)
Q Consensus 10 F~C~~C~~~L~~~-----~-F~~~dg~~yC~~CY~~~~--~pkC~~C~~~I~~~ 55 (336)
+.|..|...+.+. . ....=|..||..|..+.. ...|..|+.++..+
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 5788887776542 1 334568899999987532 56899999999875
No 168
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase, apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*
Probab=37.31 E-value=18 Score=35.16 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=18.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHH
Q 019740 214 AILILYGLPRLLTGSILAHEMMHAW 238 (336)
Q Consensus 214 ~ilvl~glp~~~~~~~lahe~~ha~ 238 (336)
+|..-++--.+.+..++||||+|-+
T Consensus 125 gi~~d~~~~~~~~a~t~AHElGHnl 149 (419)
T 2dw0_A 125 GIIQDYSEINLVVAVIMAHEMGHNL 149 (419)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred EEEecCCCcchhhhhhHHHHHHHHc
Confidence 4544555445777899999999976
No 169
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease, disintegrin, calcium-binding, ADAM, SVMP, M protein, toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A* 2erq_A*
Probab=37.04 E-value=18 Score=35.23 Aligned_cols=25 Identities=28% Similarity=0.203 Sum_probs=18.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHH
Q 019740 214 AILILYGLPRLLTGSILAHEMMHAW 238 (336)
Q Consensus 214 ~ilvl~glp~~~~~~~lahe~~ha~ 238 (336)
+|...++--.+.+..++||||+|-+
T Consensus 134 gi~~d~~~~~~~~a~t~AHElGHnl 158 (427)
T 2ero_A 134 GIVQDHSKIHHLVAIAMAHEMGHNL 158 (427)
T ss_dssp EEEECCBSSHHHHHHHHHHHHHHHT
T ss_pred EEEecCCCchhHHHHHHHHHHHHhc
Confidence 4444444345678899999999986
No 170
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A*
Probab=36.48 E-value=9 Score=41.16 Aligned_cols=41 Identities=15% Similarity=0.321 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHHHHhc-CCCC-CCcchhhhHHHHHHHHhhhcc
Q 019740 227 GSILAHEMMHAWLRLK-GYPN-LRPDVEEGICQVLAHMWLESE 267 (336)
Q Consensus 227 ~~~lahe~~ha~l~~~-g~~~-l~~~veeg~cq~~a~~wl~~~ 267 (336)
..++|||++|-|.--. .... -+..+-||+...+.++|.+..
T Consensus 296 ~~vIAHElAHQWFGNlVT~~~W~dlWLnEGFAtY~e~~~~~~~ 338 (889)
T 3ebh_A 296 LTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEM 338 (889)
T ss_dssp HHHHHHHHHTTTBTTTBEESSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCeeeecccccceeeHHHHHHHHHHHHHHh
Confidence 4799999999995320 0011 125689999999988877643
No 171
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=36.38 E-value=10 Score=29.84 Aligned_cols=46 Identities=17% Similarity=0.429 Sum_probs=33.6
Q ss_pred CeeecCCCCCCCCCceeecCCcccccccccccc---CCcCcccCCcccCC
Q 019740 9 CFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPTN 55 (336)
Q Consensus 9 CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~---~pkC~~C~~~I~~~ 55 (336)
=|.|..|...+.+. ....=|..||..|..+.. ...|..|+.+|...
T Consensus 18 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 18 KYECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp GGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCcCChhhcCe-EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 36888998887653 444568899999986532 24899999988764
No 172
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=36.09 E-value=14 Score=25.69 Aligned_cols=45 Identities=13% Similarity=0.284 Sum_probs=26.9
Q ss_pred CccCCCCccCCCCCceEEcCCCceeccchhhhcccCCCCCCchhh
Q 019740 82 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYL 126 (336)
Q Consensus 82 F~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~~C~~c~~ 126 (336)
..|..|...+..+.....+.=|..+|..|....+.....|--|..
T Consensus 15 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~ 59 (69)
T 2kiz_A 15 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 59 (69)
T ss_dssp CSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCS
T ss_pred CCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCc
Confidence 567777766643444445556778888888765443444544443
No 173
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.64 E-value=13 Score=26.20 Aligned_cols=46 Identities=11% Similarity=0.075 Sum_probs=27.5
Q ss_pred CccCCCCccCCCCCceEEcCCCceeccchhhhcccCCCCCCchhhH
Q 019740 82 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLE 127 (336)
Q Consensus 82 F~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~~C~~c~~~ 127 (336)
..|..|-..+........+.=|..+|..|....+.....|--|..+
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~ 61 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMP 61 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCB
T ss_pred CCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcc
Confidence 4677777766544444444567788888887654444455555443
No 174
>2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor, metalloprotease, dependent, peptidase; 1.70A {Tannerella forsythia} PDB: 2xs3_A
Probab=34.64 E-value=14 Score=30.94 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=11.9
Q ss_pred hhhhHHHHHHHHHHHh
Q 019740 226 TGSILAHEMMHAWLRL 241 (336)
Q Consensus 226 ~~~~lahe~~ha~l~~ 241 (336)
.-.+++||++|| |-|
T Consensus 115 ~~~v~~HEiGHa-LGL 129 (167)
T 2xs4_A 115 LITVAAHEIGHL-LGI 129 (167)
T ss_dssp HHHHHHHHHHHH-HTB
T ss_pred hhhhHHHHHHHh-hcC
Confidence 348999999999 444
No 175
>3ov0_A Cytochrome C family protein; multiheme cytochrome C, electron transfer, Fe reduction, GEO sulfurreducens; HET: HEM; 3.20A {Geobacter sulfurreducens}
Probab=34.64 E-value=11 Score=35.25 Aligned_cols=108 Identities=11% Similarity=0.319 Sum_probs=58.7
Q ss_pred eeecCCCCCCCCCc-------eeecCCccccccccccc--cC--CcCcccCCcccCCCCceEEE---eeecccccccCCC
Q 019740 10 FRCHSCNLPITDVE-------FSMSGNRPYHKHCYKEQ--HH--PKCDVCQNFIPTNSAGLIEY---RAHPFWLQKYCPS 75 (336)
Q Consensus 10 F~C~~C~~~L~~~~-------F~~~dg~~yC~~CY~~~--~~--pkC~~C~~~I~~~~~g~i~~---~~~~fW~qkyCp~ 75 (336)
+.|..|...+.... +........|..|.... +. ..|..|.....+.. |.+ .+..+|.-..
T Consensus 188 ~~C~~CH~~~~~~~~g~~~~t~~~~~~~~~C~~CH~~~~~~~~~~~C~~CH~~~~~~~---l~~~~~~g~v~f~H~~--- 261 (318)
T 3ov0_A 188 YKCNECHTKLFAYKAGAKRFTMADMDKGKSCGACHNGKDAFSSASDCGKCHPGLKPAK---LTYKTSVGEAYFDHDI--- 261 (318)
T ss_dssp CCGGGSTTTSCCSSSCSCCCCHHHHTTTCGGGGTBTTTSBSCSSSCTTTTSSSCCCCC---CCEEETTEEECCCHHH---
T ss_pred eecccccceeeeecccccccchhhhhCCCccccccCCchhccccCChhhhcCCCCCCc---eeEeccCCceEecccc---
Confidence 67889988875322 22234556899998742 32 37999998654332 223 2333443332
Q ss_pred CcCCCCCccCCCCccCCCC---CceEEcC--CCceeccchhhhcccCC--CCCCchh
Q 019740 76 HERDGTPRCCSCERMEPRD---TKYLSLD--DGRKLCLECLDSAIMDT--HECQPLY 125 (336)
Q Consensus 76 H~H~~CF~C~~C~~~l~~~---~~f~~~~--dG~~yC~~C~~~~v~~~--~~C~~c~ 125 (336)
|..=..|..|....... .....+. ....+|..|+.....+. ..|..|.
T Consensus 262 --H~~~~~C~~CH~~~~~~~~~~~~~~m~~~~~~~~C~~CH~~~~af~~~~~C~~CH 316 (318)
T 3ov0_A 262 --HLSMFKCADCHTKVFKYRKGSAPATMADMEKGKSCGVCHNGKDAFSVADDCVKCH 316 (318)
T ss_dssp --HTTTCCTTTSTTTSCCSSSCCCCCCTTHHHHTCGGGGTCSSSSSCCSSSCHHHHE
T ss_pred --ceeeeeeccccccccccccCCCccchhhhhcCCccccccCCcccccccCCHHHhh
Confidence 44447899998876421 1111110 12257999997543333 2565554
No 176
>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative splicing, calcium, chondrogenesis, cleavage on PAIR of basic residues, cytokine; 1.25A {Homo sapiens} SCOP: d.92.1.0 PDB: 3edg_A 3edi_A
Probab=34.62 E-value=14 Score=32.41 Aligned_cols=13 Identities=31% Similarity=0.350 Sum_probs=11.0
Q ss_pred hhhhHHHHHHHHH
Q 019740 226 TGSILAHEMMHAW 238 (336)
Q Consensus 226 ~~~~lahe~~ha~ 238 (336)
.-.++.||||||-
T Consensus 87 ~~g~i~HEl~Hal 99 (201)
T 3edh_A 87 KFGIVVHELGHVV 99 (201)
T ss_dssp SHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHh
Confidence 4579999999995
No 177
>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A* 2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A* 3shi_A
Probab=34.58 E-value=14 Score=31.10 Aligned_cols=15 Identities=40% Similarity=0.543 Sum_probs=11.9
Q ss_pred hhhhHHHHHHHHHHHh
Q 019740 226 TGSILAHEMMHAWLRL 241 (336)
Q Consensus 226 ~~~~lahe~~ha~l~~ 241 (336)
.-.+++||++|| |-|
T Consensus 111 ~~~v~~HEiGHa-LGL 125 (168)
T 1cge_A 111 LHRVAAHELGHS-LGL 125 (168)
T ss_dssp HHHHHHHHHHHH-TTC
T ss_pred hhhhhhhHhHhh-hcC
Confidence 458999999999 444
No 178
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=34.32 E-value=41 Score=25.40 Aligned_cols=58 Identities=14% Similarity=0.340 Sum_probs=36.6
Q ss_pred eeecCCCCCCCCCceeecCCcccccccccccc-CCcCcccCCcccCCCCceEEEee-ecccccccCCCCcCCCCCccCCC
Q 019740 10 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH-HPKCDVCQNFIPTNSAGLIEYRA-HPFWLQKYCPSHERDGTPRCCSC 87 (336)
Q Consensus 10 F~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~-~pkC~~C~~~I~~~~~g~i~~~~-~~fW~qkyCp~H~H~~CF~C~~C 87 (336)
..|..|+.+|... ++..+|..|-.... ...|..|++++.. +.+=| .. |.|..|
T Consensus 3 ~~CP~C~~~l~~~-----~~~~~C~~C~~~~~~~afCPeCgq~Le~-----lkACGA~~---------------yFC~~C 57 (81)
T 2jrp_A 3 ITCPVCHHALERN-----GDTAHCETCAKDFSLQALCPDCRQPLQV-----LKACGAVD---------------YFCQNG 57 (81)
T ss_dssp CCCSSSCSCCEEC-----SSEEECTTTCCEEEEEEECSSSCSCCCE-----EEETTEEE---------------ECCTTT
T ss_pred CCCCCCCCccccC-----CCceECccccccCCCcccCcchhhHHHH-----HHhcCCcC---------------eeeccC
Confidence 4688899988642 33445777765421 2389999998863 43433 23 348888
Q ss_pred CccCC
Q 019740 88 ERMEP 92 (336)
Q Consensus 88 ~~~l~ 92 (336)
+..+.
T Consensus 58 ~~LiS 62 (81)
T 2jrp_A 58 HGLIS 62 (81)
T ss_dssp TCCCC
T ss_pred CCEee
Confidence 88775
No 179
>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}
Probab=34.19 E-value=16 Score=32.50 Aligned_cols=22 Identities=36% Similarity=0.541 Sum_probs=16.8
Q ss_pred hhhhhhHHHHHHHHHHHhc-CCC
Q 019740 224 LLTGSILAHEMMHAWLRLK-GYP 245 (336)
Q Consensus 224 ~~~~~~lahe~~ha~l~~~-g~~ 245 (336)
.++.+++.||++|+|..-. |.+
T Consensus 46 ~l~~~v~~HElgH~~~A~~~G~~ 68 (224)
T 3b4r_A 46 LLFVSVVLHELGHSYVAKKYGVK 68 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCc
Confidence 3567889999999996553 654
No 180
>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease, inhibited, hydrol; HET: MBS; 1.50A {Homo sapiens} SCOP: d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A 1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A* 1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 3oho_A* 1ciz_A* ...
Probab=34.05 E-value=14 Score=31.13 Aligned_cols=15 Identities=40% Similarity=0.410 Sum_probs=11.8
Q ss_pred hhhhHHHHHHHHHHHh
Q 019740 226 TGSILAHEMMHAWLRL 241 (336)
Q Consensus 226 ~~~~lahe~~ha~l~~ 241 (336)
.-.+++||++|| |-|
T Consensus 113 ~~~v~~HEiGHa-LGL 127 (173)
T 1hy7_A 113 LFLVAAHEIGHS-LGL 127 (173)
T ss_dssp HHHHHHHHHHHH-HTB
T ss_pred hhhhHHHHHHHh-hcC
Confidence 358999999999 444
No 181
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin, metalloproteinase, C-type lectin, hydrolase, BL clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia russellii siamensis}
Probab=33.60 E-value=24 Score=34.41 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=17.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHH
Q 019740 214 AILILYGLPRLLTGSILAHEMMHAW 238 (336)
Q Consensus 214 ~ilvl~glp~~~~~~~lahe~~ha~ 238 (336)
+|..-++--.+.+..++||||+|.+
T Consensus 127 gi~~d~~~~~~~~a~t~AHElGHnl 151 (427)
T 2e3x_A 127 GIVQEQGNRNFKTAVIMAHELSHNL 151 (427)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred EEEEeCCCccceeeeehHHHHHHhh
Confidence 4444455445677899999999975
No 182
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.25 E-value=15 Score=24.41 Aligned_cols=31 Identities=13% Similarity=0.271 Sum_probs=19.4
Q ss_pred CeeecCCCCCCCCCceeecCCccccccccccc
Q 019740 9 CFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQ 40 (336)
Q Consensus 9 CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~ 40 (336)
=+.|..|...+.+. ....=|..||..|..+.
T Consensus 15 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 15 EASCSVCLEYLKEP-VIIECGHNFCKACITRW 45 (58)
T ss_dssp CCBCSSSCCBCSSC-CCCSSCCCCCHHHHHHH
T ss_pred CCCCccCCcccCcc-EeCCCCCccCHHHHHHH
Confidence 35677777776552 23345777787777653
No 183
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=33.12 E-value=19 Score=25.62 Aligned_cols=46 Identities=9% Similarity=0.106 Sum_probs=31.4
Q ss_pred CCCccCCCCccCCCCCceEEcCCCceeccchhhhcccC-CCCCCchhhHH
Q 019740 80 GTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMD-THECQPLYLEI 128 (336)
Q Consensus 80 ~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~-~~~C~~c~~~I 128 (336)
.-|.|..|...+. +. +...-|..||..|....+.. ...|--|..++
T Consensus 7 ~~~~C~IC~~~~~--~P-v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~ 53 (78)
T 1t1h_A 7 EYFRCPISLELMK--DP-VIVSTGQTYERSSIQKWLDAGHKTCPKSQETL 53 (78)
T ss_dssp SSSSCTTTSCCCS--SE-EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBC
T ss_pred ccCCCCCcccccc--CC-EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCC
Confidence 3488999998873 34 34568999999999876543 44565555443
No 184
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=32.72 E-value=12 Score=32.91 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=21.9
Q ss_pred CccCCCCccCCCCCceEEcCCCceeccchhhh
Q 019740 82 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDS 113 (336)
Q Consensus 82 F~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~ 113 (336)
..|..|+.... ..+- .+.||+.+|..|+..
T Consensus 173 ~~C~~CGE~~~-~~~~-~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYTY-EADA-KLLNGKPVCKPDYYG 202 (204)
T ss_dssp EECTTTCCEEE-GGGC-EEETTEEECHHHHHC
T ss_pred eECCCCCCchh-hcce-eeeCCcEEChhhhcc
Confidence 45999998875 3332 234899999999865
No 185
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=32.54 E-value=6.8 Score=27.42 Aligned_cols=47 Identities=15% Similarity=0.458 Sum_probs=33.0
Q ss_pred CeeecCCCCCCCCC----c--eeecCCccccccccccc--cCCcCcccCCcccCC
Q 019740 9 CFRCHSCNLPITDV----E--FSMSGNRPYHKHCYKEQ--HHPKCDVCQNFIPTN 55 (336)
Q Consensus 9 CF~C~~C~~~L~~~----~--F~~~dg~~yC~~CY~~~--~~pkC~~C~~~I~~~ 55 (336)
=+.|..|...+.+. . ....=|..||..|..+. ....|..|.+.+...
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 46788887776442 1 33355889999998653 346899999998764
No 186
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=32.39 E-value=5.3 Score=32.94 Aligned_cols=45 Identities=16% Similarity=0.372 Sum_probs=31.8
Q ss_pred CeeecCCCCCCCCCceeecCCccccccccccccC---CcCcccCCcccC
Q 019740 9 CFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHH---PKCDVCQNFIPT 54 (336)
Q Consensus 9 CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~~~---pkC~~C~~~I~~ 54 (336)
=|.|..|...+.+ .....-|..||..|..+... ..|..|..+|..
T Consensus 31 ~~~C~IC~~~~~~-pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 31 KYLCSACRNVLRR-PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp GGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CcCCCCCChhhcC-cEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 4678888887765 34456688899988876432 478888887643
No 187
>1r55_A ADAM 33; metalloprotease, inhibitor, asthma, hydrolase; HET: NAG MAN 097; 1.58A {Homo sapiens} SCOP: d.92.1.9 PDB: 1r54_A*
Probab=31.71 E-value=28 Score=30.27 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=12.7
Q ss_pred hhhhhhHHHHHHHHH
Q 019740 224 LLTGSILAHEMMHAW 238 (336)
Q Consensus 224 ~~~~~~lahe~~ha~ 238 (336)
+.+..++||||+|-+
T Consensus 134 ~~~a~~~AHElGHnl 148 (214)
T 1r55_A 134 IGAAATMAHEIGHSL 148 (214)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhc
Confidence 456899999999976
No 188
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=31.53 E-value=18 Score=25.23 Aligned_cols=39 Identities=26% Similarity=0.525 Sum_probs=25.7
Q ss_pred CCccCCCCccCCCCCceEEcCCCceecc--chhhhcccCCCCCCchhhHHHHHHhhccceeccccccchhc
Q 019740 81 TPRCCSCERMEPRDTKYLSLDDGRKLCL--ECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVE 149 (336)
Q Consensus 81 CF~C~~C~~~l~~~~~f~~~~dG~~yC~--~C~~~~v~~~~~C~~c~~~I~~f~~glg~~i~~~~p~~lV~ 149 (336)
=..|-.|+..|. +.+|.++|. .|... .||.+.+|.+|.+
T Consensus 10 iL~CP~c~~~L~-------~~~~~L~C~~~~c~~~-----------------------YPI~dGIPvlL~~ 50 (56)
T 2kpi_A 10 ILACPACHAPLE-------ERDAELICTGQDCGLA-----------------------YPVRDGIPVLLVD 50 (56)
T ss_dssp SCCCSSSCSCEE-------EETTEEEECSSSCCCE-----------------------EEEETTEECCCTT
T ss_pred heeCCCCCCcce-------ecCCEEEcCCcCCCcE-----------------------EeeECCEeeeCHH
Confidence 367777877663 224777777 66332 5888889888754
No 189
>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease, astacin, metal- protease; 1.10A {Danio rerio}
Probab=31.22 E-value=22 Score=31.16 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=11.9
Q ss_pred hhhhhhHHHHHHHHH
Q 019740 224 LLTGSILAHEMMHAW 238 (336)
Q Consensus 224 ~~~~~~lahe~~ha~ 238 (336)
-..-.++.||+|||-
T Consensus 91 C~~~g~i~HEl~HaL 105 (199)
T 3lqb_A 91 CVYSGIAQHELNHAL 105 (199)
T ss_dssp CCSHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHh
Confidence 345579999999994
No 190
>4ger_A Gentlyase metalloprotease; metalloproteinase, tissue disaggregation, thermoly protease, hydrolase; HET: LYS; 1.59A {Paenibacillus polymyxa}
Probab=31.18 E-value=18 Score=33.94 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=29.8
Q ss_pred ChhhhhhhHHHHHHHHHHHhc-C--CCCCCcchhhhHHHHHHHH
Q 019740 222 PRLLTGSILAHEMMHAWLRLK-G--YPNLRPDVEEGICQVLAHM 262 (336)
Q Consensus 222 p~~~~~~~lahe~~ha~l~~~-g--~~~l~~~veeg~cq~~a~~ 262 (336)
|-...--|+||||+|+..--. | |.+=+=.+-|+|--+++.+
T Consensus 125 ~~~~slDVvaHEltHGVt~~ta~L~Y~~qsGaLNEs~SDifG~~ 168 (304)
T 4ger_A 125 AFSGDPDVVGHELTHGVTEYTSNLEYYGESGALNEAFSDVIGND 168 (304)
T ss_dssp CGGGSHHHHHHHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhccccccccccCCccccCCccchhHHHHHHHHHH
Confidence 433467899999999998764 2 3333445788898888776
No 191
>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of basic residues, extracellular matrix, glycoprotein, hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens} PDB: 3b2z_A
Probab=31.15 E-value=25 Score=32.55 Aligned_cols=15 Identities=27% Similarity=0.421 Sum_probs=13.1
Q ss_pred hhhhhhHHHHHHHHH
Q 019740 224 LLTGSILAHEMMHAW 238 (336)
Q Consensus 224 ~~~~~~lahe~~ha~ 238 (336)
+.+..++||||+|-+
T Consensus 141 ~~~a~t~AHElGHnl 155 (316)
T 2rjp_A 141 LQSAFTAAHQLGHVF 155 (316)
T ss_dssp TTHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhhc
Confidence 578899999999965
No 192
>2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease, heparin-binding, metalloproteinase, metzincin, glycoprotein metal-binding; 2.00A {Homo sapiens} PDB: 2jih_A 3q2g_A* 3q2h_A*
Probab=30.94 E-value=16 Score=33.54 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=12.9
Q ss_pred hhhhhhHHHHHHHHH
Q 019740 224 LLTGSILAHEMMHAW 238 (336)
Q Consensus 224 ~~~~~~lahe~~ha~ 238 (336)
+.+..++||||+|-+
T Consensus 141 ~~~a~t~AHElGHnl 155 (300)
T 2v4b_A 141 LQAAFTTAHELGHVF 155 (300)
T ss_dssp TTHHHHHHHHHHHHT
T ss_pred ccceehhhhhhhhhc
Confidence 467899999999975
No 193
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=30.62 E-value=21 Score=26.84 Aligned_cols=45 Identities=13% Similarity=0.318 Sum_probs=30.8
Q ss_pred CccCCCCccCCCCCceEEcCCCceeccchhhhcccCCCCCCchhhHH
Q 019740 82 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 128 (336)
Q Consensus 82 F~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~~C~~c~~~I 128 (336)
+.|..|...+. .......=|..||..|..........|--|..++
T Consensus 23 ~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 67 (99)
T 2y43_A 23 LRCGICFEYFN--IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67 (99)
T ss_dssp TBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCcccCChhhC--CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcC
Confidence 67888888774 3332225789999999987765555666665544
No 194
>3gor_A Putative metal-dependent hydrolase; structural genomics, DINB superfamily, PSI-2, protein structure initiative; 2.51A {Geobacillus stearothermophilus}
Probab=30.57 E-value=27 Score=27.56 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=24.4
Q ss_pred hhhhhhHHHHHHH-----HHHHhcCCCCCCcchhhh
Q 019740 224 LLTGSILAHEMMH-----AWLRLKGYPNLRPDVEEG 254 (336)
Q Consensus 224 ~~~~~~lahe~~h-----a~l~~~g~~~l~~~veeg 254 (336)
.+...++.|+.-| +|||+.|+..||--|+.|
T Consensus 122 ~~l~~~~~H~~hHrGQi~~~lR~lG~~~~p~~~~rg 157 (157)
T 3gor_A 122 QFLQLAMDHEIHHKGQLFVYVRGMGHTDLPLFVKRG 157 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccccCC
Confidence 3455677888877 699999998898877766
No 195
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=30.28 E-value=25 Score=26.84 Aligned_cols=45 Identities=11% Similarity=0.247 Sum_probs=31.0
Q ss_pred CccCCCCccCCCCCceEEcCCCceeccchhhhcccCCCCCCchhhHH
Q 019740 82 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 128 (336)
Q Consensus 82 F~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~~C~~c~~~I 128 (336)
+.|..|...+. .......=|..||..|....+.....|--|..++
T Consensus 16 ~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (108)
T 2ckl_A 16 LMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPICDVQV 60 (108)
T ss_dssp TBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBS
T ss_pred CCCccCChHHh--CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccc
Confidence 67888988773 3433336799999999987755555666665443
No 196
>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET: CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11
Probab=29.93 E-value=19 Score=30.17 Aligned_cols=13 Identities=31% Similarity=0.307 Sum_probs=11.1
Q ss_pred hhhhHHHHHHHHH
Q 019740 226 TGSILAHEMMHAW 238 (336)
Q Consensus 226 ~~~~lahe~~ha~ 238 (336)
...+++||++||-
T Consensus 113 ~~~v~~HEiGHaL 125 (165)
T 1hv5_A 113 LLQVAAHEFGHVL 125 (165)
T ss_dssp HHHHHHHHHHHHT
T ss_pred hhhhHHHHhHhhh
Confidence 4689999999984
No 197
>1bqb_A Protein (aureolysin); hydrolase, metalloproteinase; 1.72A {Staphylococcus aureus} SCOP: d.92.1.2
Probab=29.89 E-value=20 Score=33.62 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=29.0
Q ss_pred hhhhhhHHHHHHHHHHHhc-C--CCCCCcchhhhHHHHHHHH
Q 019740 224 LLTGSILAHEMMHAWLRLK-G--YPNLRPDVEEGICQVLAHM 262 (336)
Q Consensus 224 ~~~~~~lahe~~ha~l~~~-g--~~~l~~~veeg~cq~~a~~ 262 (336)
...--|+||||+|+..--. | |.+=+=.+-|++--+++.+
T Consensus 136 ~~~lDVv~HE~tHGVt~~~agl~y~~eSGaLnEs~SDifg~~ 177 (301)
T 1bqb_A 136 SGANDVVAHEITHGVTQQTANLEYKDQSGALNESFSDVFGYF 177 (301)
T ss_dssp GGCHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred ccccceeeeecccceecccCCCcccCCcCchhHHHHHHHhHh
Confidence 3467899999999996553 3 3333456789999999986
No 198
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=29.59 E-value=21 Score=26.62 Aligned_cols=45 Identities=11% Similarity=0.093 Sum_probs=29.5
Q ss_pred CccCCCCccCCCCCceEEcCCCceeccchhhhcccCCCCCCchhh
Q 019740 82 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYL 126 (336)
Q Consensus 82 F~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~~C~~c~~ 126 (336)
..|..|-..+..+.....+.=|..||..|....+.....|--|..
T Consensus 41 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~ 85 (91)
T 2l0b_A 41 MCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRC 85 (91)
T ss_dssp SEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCC
T ss_pred CCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCc
Confidence 568888777654555555556788888888776555555555543
No 199
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.53 E-value=20 Score=26.96 Aligned_cols=13 Identities=31% Similarity=0.828 Sum_probs=10.3
Q ss_pred CeeecCCCCCCCC
Q 019740 9 CFRCHSCNLPITD 21 (336)
Q Consensus 9 CF~C~~C~~~L~~ 21 (336)
=|.|..|++.+..
T Consensus 19 ~~~C~~C~k~f~~ 31 (115)
T 2dmi_A 19 KFRCKDCSAAYDT 31 (115)
T ss_dssp SEEBSSSSCEESS
T ss_pred CEECCccCchhcC
Confidence 4889999887765
No 200
>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A*
Probab=28.44 E-value=29 Score=30.13 Aligned_cols=15 Identities=33% Similarity=0.372 Sum_probs=12.6
Q ss_pred hhhhhhHHHHHHHHH
Q 019740 224 LLTGSILAHEMMHAW 238 (336)
Q Consensus 224 ~~~~~~lahe~~ha~ 238 (336)
+.+..++||||+|-+
T Consensus 139 ~~~a~~~AHElGHnl 153 (217)
T 3b8z_A 139 LHAAFTVAHEIGHLL 153 (217)
T ss_dssp SSHHHHHHHHHHHHT
T ss_pred cchhhhhHhhhhhhc
Confidence 466789999999975
No 201
>1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex (metalloprotease/inhibitor); HET: BSI; 1.20A {Homo sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A 1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A* 3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A 1a86_A* 1jh1_A* 1a85_A ...
Probab=28.33 E-value=22 Score=29.78 Aligned_cols=13 Identities=31% Similarity=0.253 Sum_probs=11.1
Q ss_pred hhhhHHHHHHHHH
Q 019740 226 TGSILAHEMMHAW 238 (336)
Q Consensus 226 ~~~~lahe~~ha~ 238 (336)
...+++||++||-
T Consensus 112 ~~~v~~HE~GHal 124 (163)
T 1i76_A 112 LFLVAAHEFGHSL 124 (163)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhhHHHhhhhh
Confidence 4689999999993
No 202
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of BAS residues, extracellular matrix, glycoprotein, hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo sapiens}
Probab=28.21 E-value=29 Score=32.87 Aligned_cols=15 Identities=33% Similarity=0.372 Sum_probs=12.8
Q ss_pred hhhhhhHHHHHHHHH
Q 019740 224 LLTGSILAHEMMHAW 238 (336)
Q Consensus 224 ~~~~~~lahe~~ha~ 238 (336)
+.+..++||||+|-+
T Consensus 141 ~~~a~~~AHElGHnl 155 (378)
T 2rjq_A 141 LHAAFTVAHEIGHLL 155 (378)
T ss_dssp TTHHHHHHHHHHHHT
T ss_pred cchhhhhhhhhhhhc
Confidence 467899999999975
No 203
>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme, protease, D bond, hydrolase, metal-binding, metalloprotease, zymogen; 1.45A {Astacus astacus} PDB: 1iab_A 1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A
Probab=28.17 E-value=20 Score=32.19 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=11.5
Q ss_pred hhhhhHHHHHHHHH
Q 019740 225 LTGSILAHEMMHAW 238 (336)
Q Consensus 225 ~~~~~lahe~~ha~ 238 (336)
..-.++.||+|||-
T Consensus 119 ~~~g~i~HEl~HaL 132 (235)
T 3lq0_A 119 VYHGTILHALMHAI 132 (235)
T ss_dssp CSHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHh
Confidence 34589999999995
No 204
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=27.38 E-value=18 Score=31.20 Aligned_cols=48 Identities=8% Similarity=0.051 Sum_probs=34.8
Q ss_pred CCCeeecCCCCCCCCCceeecCCccccccccccc---cCCcCcccCCcccCC
Q 019740 7 PECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQ---HHPKCDVCQNFIPTN 55 (336)
Q Consensus 7 ~~CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~---~~pkC~~C~~~I~~~ 55 (336)
|.-|.|..|...+.+ ......|..||+.|-.+. .+..|..|++++...
T Consensus 104 p~~f~CPI~~elm~D-PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cHhhcccCccccCCC-CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 567899999888876 455578899999886542 234588888887653
No 205
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.64 E-value=36 Score=23.54 Aligned_cols=44 Identities=25% Similarity=0.560 Sum_probs=31.2
Q ss_pred CCccCCCCccCCCCCceEEcCCCceeccchhhhcccCCCCCCchhhHH
Q 019740 81 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 128 (336)
Q Consensus 81 CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~~C~~c~~~I 128 (336)
-+.|..|...+. + +.+.=|..+|..|..+.+.....|--|..+|
T Consensus 15 ~~~C~IC~~~~~-~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 58 (70)
T 2ecn_A 15 EEECCICMDGRA-D---LILPCAHSFCQKCIDKWSDRHRNCPICRLQM 58 (70)
T ss_dssp CCCCSSSCCSCC-S---EEETTTEEECHHHHHHSSCCCSSCHHHHHCT
T ss_pred CCCCeeCCcCcc-C---cccCCCCcccHHHHHHHHHCcCcCCCcCCcc
Confidence 367888877764 3 4455788999999988766666776666554
No 206
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.61 E-value=17 Score=25.81 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=24.9
Q ss_pred CCCccCCCCccCCCCCceEEcCCCceeccchhhhcccCCCCCCchh
Q 019740 80 GTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLY 125 (336)
Q Consensus 80 ~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~~C~~c~ 125 (336)
.-..|..|-..+..+.....+.=|..+|..|..+.+.....|--|.
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr 67 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 67 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcC
Confidence 3356777766664344444444566777777766543334444443
No 207
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.52 E-value=23 Score=25.58 Aligned_cols=34 Identities=21% Similarity=0.445 Sum_probs=23.5
Q ss_pred CccCCCCccCCCCCc-eEEcCCCceeccchhhhcc
Q 019740 82 PRCCSCERMEPRDTK-YLSLDDGRKLCLECLDSAI 115 (336)
Q Consensus 82 F~C~~C~~~l~~~~~-f~~~~dG~~yC~~C~~~~v 115 (336)
+.|..|...+..+.. .+.+.=|..+|..|....+
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~ 50 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLL 50 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHH
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHHH
Confidence 678888877753221 3455578899999987764
No 208
>3ayu_A 72 kDa type IV collagenase; protease, hydrolase-hydrolase inhibitor complex; 2.00A {Homo sapiens} PDB: 1qib_A 1hov_A*
Probab=26.34 E-value=24 Score=29.74 Aligned_cols=12 Identities=33% Similarity=0.238 Sum_probs=10.5
Q ss_pred hhhHHHHHHHHH
Q 019740 227 GSILAHEMMHAW 238 (336)
Q Consensus 227 ~~~lahe~~ha~ 238 (336)
-.+++||++||-
T Consensus 115 ~~~~~HE~gH~l 126 (167)
T 3ayu_A 115 FLVAAHAFGHAM 126 (167)
T ss_dssp HHHHHHHHHHHT
T ss_pred eeehhhhhHHhc
Confidence 489999999984
No 209
>1u4g_A Elastase, pseudolysin; , inhibition, peptidase family M4, hydrolase; HET: HPI; 1.40A {Pseudomonas aeruginosa} SCOP: d.92.1.2 PDB: 1ezm_A* 3dbk_A*
Probab=26.33 E-value=23 Score=33.15 Aligned_cols=39 Identities=21% Similarity=0.392 Sum_probs=28.7
Q ss_pred hhhhhhHHHHHHHHHHHhc-C--CCCCCcchhhhHHHHHHHH
Q 019740 224 LLTGSILAHEMMHAWLRLK-G--YPNLRPDVEEGICQVLAHM 262 (336)
Q Consensus 224 ~~~~~~lahe~~ha~l~~~-g--~~~l~~~veeg~cq~~a~~ 262 (336)
+..--|+||||+|+..--. | |.+=+=.+-|++.-+++-+
T Consensus 132 ~~~lDVv~HE~tHGVt~~~agL~y~~eSGaLnEs~SDifG~~ 173 (301)
T 1u4g_A 132 LVSLDVAAHEVSHGFTEQNSGLIYRGQSGGMNEAFSDMAGEA 173 (301)
T ss_dssp SCCHHHHHHHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred ccccceeeeccccceeccccCccccCCccchhHHHHHHHHHH
Confidence 3577999999999996553 3 3333456789999999854
No 210
>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11
Probab=26.18 E-value=23 Score=32.10 Aligned_cols=13 Identities=31% Similarity=0.276 Sum_probs=11.0
Q ss_pred hhhhHHHHHHHHH
Q 019740 226 TGSILAHEMMHAW 238 (336)
Q Consensus 226 ~~~~lahe~~ha~ 238 (336)
.-.|++||++||-
T Consensus 195 l~~va~HEiGHaL 207 (255)
T 1slm_A 195 LFLVAAHEIGHSL 207 (255)
T ss_dssp HHHHHHHHHHHHT
T ss_pred ehhhhHHHHHHHh
Confidence 4589999999994
No 211
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=26.09 E-value=32 Score=27.61 Aligned_cols=44 Identities=18% Similarity=0.412 Sum_probs=31.2
Q ss_pred CccCCCCccCCCCCceEEcCCCceeccchhhhcccCCCCCCchhhHH
Q 019740 82 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 128 (336)
Q Consensus 82 F~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~~C~~c~~~I 128 (336)
+.|..|...+. .. +.+.=|..||..|..........|.-|..+|
T Consensus 54 ~~C~iC~~~~~--~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 97 (138)
T 4ayc_A 54 LQCIICSEYFI--EA-VTLNCAHSFCSYCINEWMKRKIECPICRKDI 97 (138)
T ss_dssp SBCTTTCSBCS--SE-EEETTSCEEEHHHHHHHTTTCSBCTTTCCBC
T ss_pred CCCcccCcccC--Cc-eECCCCCCccHHHHHHHHHcCCcCCCCCCcC
Confidence 56888887773 23 3456899999999887655556677666554
No 212
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=25.68 E-value=7.9 Score=29.99 Aligned_cols=16 Identities=19% Similarity=0.486 Sum_probs=11.2
Q ss_pred cccCCcCcccCCcccC
Q 019740 39 EQHHPKCDVCQNFIPT 54 (336)
Q Consensus 39 ~~~~pkC~~C~~~I~~ 54 (336)
.+..+.|..|+..|--
T Consensus 13 ~~~~qiCqiCGD~VG~ 28 (93)
T 1weo_A 13 NLDGQFCEICGDQIGL 28 (93)
T ss_dssp CCSSCBCSSSCCBCCB
T ss_pred ccCCCccccccCcccc
Confidence 3456788888887753
No 213
>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12, complex (elastase inhibitor), acetohydroxamic acid, hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB: 1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A 3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A* 3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ...
Probab=25.36 E-value=25 Score=29.26 Aligned_cols=12 Identities=25% Similarity=0.152 Sum_probs=10.6
Q ss_pred hhhhHHHHHHHH
Q 019740 226 TGSILAHEMMHA 237 (336)
Q Consensus 226 ~~~~lahe~~ha 237 (336)
.-.+++||++||
T Consensus 108 ~~~~~~HE~GH~ 119 (159)
T 1y93_A 108 LFLTAVHEIGHS 119 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhhhhhhhhh
Confidence 458999999999
No 214
>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}
Probab=25.28 E-value=41 Score=32.45 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=12.7
Q ss_pred hhhhhhHHHHHHHHH
Q 019740 224 LLTGSILAHEMMHAW 238 (336)
Q Consensus 224 ~~~~~~lahe~~ha~ 238 (336)
+.+..++||||+|-+
T Consensus 137 ~~~a~t~AHElGHnl 151 (397)
T 3k7n_A 137 SLVASTITHELGHNL 151 (397)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred chhhhhHHHHHHHHc
Confidence 567788999999985
No 215
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.61 E-value=15 Score=25.14 Aligned_cols=31 Identities=10% Similarity=0.243 Sum_probs=19.0
Q ss_pred CeeecCCCCCCCCCceeecCCccccccccccc
Q 019740 9 CFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQ 40 (336)
Q Consensus 9 CF~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~ 40 (336)
=+.|..|...+.+. ....=|..||..|..+.
T Consensus 20 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~ 50 (63)
T 2ysj_A 20 EVICPICLDILQKP-VTIDCGHNFCLKCITQI 50 (63)
T ss_dssp CCBCTTTCSBCSSC-EECTTSSEECHHHHHHH
T ss_pred CCCCCcCCchhCCe-EEeCCCCcchHHHHHHH
Confidence 46677777666542 22355677777776553
No 216
>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja atra}
Probab=24.54 E-value=40 Score=32.85 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=13.2
Q ss_pred hhhhhhhHHHHHHHHH
Q 019740 223 RLLTGSILAHEMMHAW 238 (336)
Q Consensus 223 ~~~~~~~lahe~~ha~ 238 (336)
.+.+..++||||+|-+
T Consensus 141 ~~~~a~t~AHElGHnl 156 (422)
T 3k7l_A 141 TRMVAITMAHEMGHNL 156 (422)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred chhhhHHHHHHHHHHc
Confidence 3567788999999975
No 217
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=24.36 E-value=30 Score=34.49 Aligned_cols=21 Identities=29% Similarity=0.218 Sum_probs=17.8
Q ss_pred cCCChhhhhhhHHHHHHHHHH
Q 019740 219 YGLPRLLTGSILAHEMMHAWL 239 (336)
Q Consensus 219 ~glp~~~~~~~lahe~~ha~l 239 (336)
.||.+--..+|||||++|.-.
T Consensus 322 ~~l~~~El~aVlaHElgH~~~ 342 (482)
T 4aw6_A 322 QGCKNEEVLAVLGHELGHWKL 342 (482)
T ss_dssp CCCCHHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHHc
Confidence 368888899999999999753
No 218
>3nxq_A Angiotensin-converting enzyme; dicarboxy zinc metallopeptidase, hydrolase, hydrolase-hydrol inhibitor complex; HET: RX4 NAG FUC BMA P6G PG4; 1.99A {Homo sapiens} PDB: 2xyd_A* 2c6n_A* 2c6f_A*
Probab=24.24 E-value=43 Score=34.53 Aligned_cols=36 Identities=33% Similarity=0.344 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHhc--C----CC-CCCcchhhhHHHHHHHHh
Q 019740 228 SILAHEMMHAWLRLK--G----YP-NLRPDVEEGICQVLAHMW 263 (336)
Q Consensus 228 ~~lahe~~ha~l~~~--g----~~-~l~~~veeg~cq~~a~~w 263 (336)
-++-|||+|+..-++ . || ...|..+|.||+++|..-
T Consensus 357 ~t~hHEmGH~qy~~~y~~~P~~~r~~anpgfhEAige~~slS~ 399 (629)
T 3nxq_A 357 STVHHEMGHIQYYLQYKDLPVSLRRGANPGFHEAIGDVLALSV 399 (629)
T ss_dssp HHHHHHHHHHHHHHHSTTSCGGGCSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCCchHHHHHHHHHHHHc
Confidence 578899999887653 2 23 234778999999997653
No 219
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=23.89 E-value=33 Score=25.01 Aligned_cols=41 Identities=17% Similarity=0.425 Sum_probs=30.0
Q ss_pred eecCCCCCCCCCceeecCCcc-ccccccccccCCcCcccCCcccC
Q 019740 11 RCHSCNLPITDVEFSMSGNRP-YHKHCYKEQHHPKCDVCQNFIPT 54 (336)
Q Consensus 11 ~C~~C~~~L~~~~F~~~dg~~-yC~~CY~~~~~pkC~~C~~~I~~ 54 (336)
.|..|...+.+..| ..=|.. +|..|..+. ..|..|..+|..
T Consensus 20 ~C~IC~~~~~~~v~-~pCgH~~~C~~C~~~~--~~CP~Cr~~i~~ 61 (79)
T 2yho_A 20 LCMVCCEEEINSTF-CPCGHTVCCESCAAQL--QSCPVCRSRVEH 61 (79)
T ss_dssp BCTTTSSSBCCEEE-ETTCBCCBCHHHHTTC--SBCTTTCCBCCE
T ss_pred EeEEeCcccCcEEE-ECCCCHHHHHHHHHhc--CcCCCCCchhhC
Confidence 56777666655333 345666 999999865 499999999985
No 220
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=23.70 E-value=24 Score=23.62 Aligned_cols=21 Identities=19% Similarity=0.513 Sum_probs=15.9
Q ss_pred CCceEEcCCCceeccchhhhc
Q 019740 94 DTKYLSLDDGRKLCLECLDSA 114 (336)
Q Consensus 94 ~~~f~~~~dG~~yC~~C~~~~ 114 (336)
+-.|++--+-+++|.+|+++.
T Consensus 18 nCpF~mSVnTQP~CHEC~err 38 (49)
T 2eqg_A 18 NCPFFMSVNTQPLCHECSERR 38 (49)
T ss_dssp TCCSBCCTTTTTSCHHHHHHH
T ss_pred CCCeEEEecCccchHHHHHHH
Confidence 344555558999999999874
No 221
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.43 E-value=38 Score=23.95 Aligned_cols=42 Identities=17% Similarity=0.474 Sum_probs=28.7
Q ss_pred eeecCCCCCCCCCceeecCCcc-ccccccccccCCcCcccCCcccC
Q 019740 10 FRCHSCNLPITDVEFSMSGNRP-YHKHCYKEQHHPKCDVCQNFIPT 54 (336)
Q Consensus 10 F~C~~C~~~L~~~~F~~~dg~~-yC~~CY~~~~~pkC~~C~~~I~~ 54 (336)
..|..|-....+..| ..=|.. +|..|... ..+|..|.++|..
T Consensus 16 ~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~~--~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 16 KDCVVCQNGTVNWVL-LPCRHTCLCDGCVKY--FQQCPMCRQFVQE 58 (68)
T ss_dssp SCCSSSSSSCCCCEE-TTTTBCCSCTTHHHH--CSSCTTTCCCCCC
T ss_pred CCCCCcCcCCCCEEE-ECCCChhhhHHHHhc--CCCCCCCCcchhc
Confidence 456666555544333 234556 99999885 4789999999985
No 222
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=23.05 E-value=19 Score=26.23 Aligned_cols=29 Identities=21% Similarity=0.516 Sum_probs=18.7
Q ss_pred eecCCCCCCCCCceeecCCccccccccccc
Q 019740 11 RCHSCNLPITDVEFSMSGNRPYHKHCYKEQ 40 (336)
Q Consensus 11 ~C~~C~~~L~~~~F~~~dg~~yC~~CY~~~ 40 (336)
-|..|+.- +...+.-=||.+||..||.+.
T Consensus 10 WC~ICneD-AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 10 WCCICNED-ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp SCTTTCSC-CCEEETTTTSEEECSSHHHHH
T ss_pred eeEEeCCC-CeEEecCCCCceehHHHHHHH
Confidence 35566554 333444456789999999873
No 223
>2y6d_A Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapiens} PDB: 2ddy_A* 1mmq_A* 1mmp_A* 1mmr_A* 2y6c_A*
Probab=22.65 E-value=30 Score=29.24 Aligned_cols=15 Identities=27% Similarity=0.266 Sum_probs=11.7
Q ss_pred hhhhHHHHHHHHHHHh
Q 019740 226 TGSILAHEMMHAWLRL 241 (336)
Q Consensus 226 ~~~~lahe~~ha~l~~ 241 (336)
.-.+++||++|| |-|
T Consensus 115 ~~~~~~HE~gH~-lGl 129 (174)
T 2y6d_A 115 FLYAATHELGHS-LGM 129 (174)
T ss_dssp HHHHHHHHHHHH-HTB
T ss_pred eeehhhHHhHhh-hcC
Confidence 347999999999 444
No 224
>2qr4_A Peptidase M3B, oligoendopeptidase F; structural genomics, PSI-2, protein ST initiative; 2.50A {Enterococcus faecium}
Probab=22.53 E-value=44 Score=33.63 Aligned_cols=34 Identities=21% Similarity=0.152 Sum_probs=16.3
Q ss_pred hhhhHHHHHHHHHHHh---cCCCCCCcchhhhHHHHH
Q 019740 226 TGSILAHEMMHAWLRL---KGYPNLRPDVEEGICQVL 259 (336)
Q Consensus 226 ~~~~lahe~~ha~l~~---~g~~~l~~~veeg~cq~~ 259 (336)
--..|+||++||+--+ .+.|-+.-.+.-+++++-
T Consensus 363 dv~TL~HE~GHalH~~ls~~~~~~~~~~~~~d~~E~~ 399 (587)
T 2qr4_A 363 QLFTLVHEMGHSVHSYFTRSNQPYVYGDYSIFLAEIA 399 (587)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CHHHHHH
T ss_pred hHHHHHHHhchHHHHHHhcCcCCccccCCchHHHHHH
Confidence 3467999999996422 123333335666777664
No 225
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=22.31 E-value=52 Score=25.67 Aligned_cols=47 Identities=21% Similarity=0.427 Sum_probs=33.6
Q ss_pred CCCCCccCCCCccCCCCCceEEcCCCceeccchhhhcccCCCCCCchhhHH
Q 019740 78 RDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 128 (336)
Q Consensus 78 H~~CF~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~~~~C~~c~~~I 128 (336)
+-+=+.|.+|--. +..-+.- .+.-+|+.|...+...+..|.-|++++
T Consensus 25 ~~G~~nCKsCWf~---~k~LV~C-~dHYLCl~CLtlmL~~SdrCpIC~~pL 71 (99)
T 2ko5_A 25 HLGPQFCKSCWFE---NKGLVEC-NNHYLCLNCLTLLLSVSNRCPICKMPL 71 (99)
T ss_dssp CSCCCCCCSSCSC---CSSEEEC-SSCEEEHHHHHHTCSSSSEETTTTEEC
T ss_pred ccCcccChhhccc---cCCeeee-cchhhHHHHHHHHHhhccCCcccCCcC
Confidence 3345778888753 3344444 678899999999988888888777553
No 226
>3dnz_A Thermolysin; hydrolase, metalloproteinase, calcium, metal-binding, metalloprotease, protease, secreted, zinc, zymogen; HET: LYS; 1.20A {Bacillus thermoproteolyticus} PDB: 1kjo_A* 1kjp_A* 1kkk_A* 1kl6_A* 1kr6_A* 1kro_A* 1ks7_A* 1kto_A* 1y3g_E* 2whz_A* 2wi0_A* 1kei_A* 3do0_A* 3do1_A* 3do2_A* 3fb0_A 3fbo_A 3fgd_A* 3flf_A* 3fv4_A* ...
Probab=22.11 E-value=42 Score=31.61 Aligned_cols=41 Identities=27% Similarity=0.420 Sum_probs=28.9
Q ss_pred ChhhhhhhHHHHHHHHHHHhc-C--CCCCCcchhhhHHHHHHHH
Q 019740 222 PRLLTGSILAHEMMHAWLRLK-G--YPNLRPDVEEGICQVLAHM 262 (336)
Q Consensus 222 p~~~~~~~lahe~~ha~l~~~-g--~~~l~~~veeg~cq~~a~~ 262 (336)
|....--|+||||+|+..--. | |.+=+=.+-|++--+++-+
T Consensus 132 ~~~~slDVv~HE~tHgvt~~~agL~y~~esGaLNEs~SDifG~~ 175 (316)
T 3dnz_A 132 PLSGGIDVVAHELTHAVTDYTAGLIYQNESGAINEAISDIFGTL 175 (316)
T ss_dssp CGGGCHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred cccccccceeeeeccccccccCCCcccCCccchhHHHHHHHHHH
Confidence 433467899999999997764 3 3333345788888888755
No 227
>2vqx_A Metalloproteinase; thermolysin-like structure, zinc, protease, hydrolase, metalloprotease; 1.82A {Serratia proteamaculans}
Probab=21.66 E-value=34 Score=32.55 Aligned_cols=40 Identities=15% Similarity=0.312 Sum_probs=28.2
Q ss_pred hhhhhhHHHHHHHHHHHhc-C--CCCCCcchhhhHHHHHHHHh
Q 019740 224 LLTGSILAHEMMHAWLRLK-G--YPNLRPDVEEGICQVLAHMW 263 (336)
Q Consensus 224 ~~~~~~lahe~~ha~l~~~-g--~~~l~~~veeg~cq~~a~~w 263 (336)
...--|+||||+|+..--. | |.+=+=.+-|++--+++.+.
T Consensus 154 ~~~lDVv~HEltHGVt~~~agL~Y~~eSGaLNEs~SDifG~~v 196 (341)
T 2vqx_A 154 TIAIDVVGHALAHGVTESEAGLIYFQQAGALNESLSDVFGSLV 196 (341)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhcccceecccCCccccCCCcchhhHHHHHHHHHH
Confidence 4566899999999996553 3 33333567788888887653
No 228
>3nqx_A MCP-02, secreted metalloprotease MCP02; zinc metalloprotease, alpha/beta protein, hydrolase; 1.70A {Pseudoalteromonas SP} PDB: 3nqy_B 3nqz_B
Probab=21.08 E-value=36 Score=31.95 Aligned_cols=39 Identities=21% Similarity=0.376 Sum_probs=28.0
Q ss_pred hhhhhhHHHHHHHHHHHhc-C--CCCCCcchhhhHHHHHHHH
Q 019740 224 LLTGSILAHEMMHAWLRLK-G--YPNLRPDVEEGICQVLAHM 262 (336)
Q Consensus 224 ~~~~~~lahe~~ha~l~~~-g--~~~l~~~veeg~cq~~a~~ 262 (336)
+..--|+||||+|+..--. | |..=+-.+-|++--+++-+
T Consensus 133 ~~slDVv~HE~tHGvt~~~a~l~y~~esGaLnEs~SDifg~~ 174 (306)
T 3nqx_A 133 LVSLDVSAHEVSHGFTEQNSGLIYNGKPGGLNEAFSDMAGEA 174 (306)
T ss_dssp SCCHHHHHHHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhccccccCCCCCccCCCCCcccchHHHHHHHH
Confidence 4577899999999997642 3 2222345789999999854
No 229
>3ce2_A Putative peptidase; structural genomics, unknown function, P protein structure initiative; 2.60A {Chlamydophila abortus}
Probab=20.64 E-value=31 Score=35.01 Aligned_cols=14 Identities=36% Similarity=0.380 Sum_probs=11.1
Q ss_pred hhhhhHHHHHHHHH
Q 019740 225 LTGSILAHEMMHAW 238 (336)
Q Consensus 225 ~~~~~lahe~~ha~ 238 (336)
---..|+||++||+
T Consensus 395 ~dv~TL~HE~GHal 408 (618)
T 3ce2_A 395 YDVSVIAHEGGHSM 408 (618)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhchHH
Confidence 33467999999995
No 230
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=20.22 E-value=34 Score=28.21 Aligned_cols=45 Identities=18% Similarity=0.405 Sum_probs=29.9
Q ss_pred CccCCCCccCCCCCceEEcCCCceeccchhhhcccC-CCCCCchhhHH
Q 019740 82 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMD-THECQPLYLEI 128 (336)
Q Consensus 82 F~C~~C~~~l~~~~~f~~~~dG~~yC~~C~~~~v~~-~~~C~~c~~~I 128 (336)
+.|..|...+. .......=|..||..|....+.. ...|--|..+|
T Consensus 55 ~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 55 LMCPICLDMLK--NTMTTKECLHRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp HBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCcccChHhh--CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 67888988774 33333357999999999887543 44565555443
No 231
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.09 E-value=24 Score=26.56 Aligned_cols=44 Identities=11% Similarity=0.256 Sum_probs=30.2
Q ss_pred CCCeeecCCCCCCCCCceee-cCCcccccccccccc--------CCcCcc--cCCc
Q 019740 7 PECFRCHSCNLPITDVEFSM-SGNRPYHKHCYKEQH--------HPKCDV--CQNF 51 (336)
Q Consensus 7 ~~CF~C~~C~~~L~~~~F~~-~dg~~yC~~CY~~~~--------~pkC~~--C~~~ 51 (336)
+.=|.|..|...+.+ .... ..|..||+.|-.+.+ ...|.. |.+.
T Consensus 5 ~~~~~CPI~~~~~~d-PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK-PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSS-EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcC-CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 345889999888876 4445 489999999875432 236766 6554
No 232
>1rm8_A MMP-16, matrix metalloproteinase-16, MT3-MMP; membrane type - matrix metalloproteinase, batimastat, hydroxamate inhibitor, protease, hydrolase; HET: BAT; 1.80A {Homo sapiens} SCOP: d.92.1.11
Probab=20.07 E-value=37 Score=28.34 Aligned_cols=13 Identities=31% Similarity=0.258 Sum_probs=10.8
Q ss_pred hhhhHHHHHHHHH
Q 019740 226 TGSILAHEMMHAW 238 (336)
Q Consensus 226 ~~~~lahe~~ha~ 238 (336)
.-.+++||++|+-
T Consensus 117 ~~~~~~he~gh~l 129 (169)
T 1rm8_A 117 LFLVAVHELGHAL 129 (169)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eeeehhhhhhhhc
Confidence 3479999999993
Done!