BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019741
         (336 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ST7|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
           Protein Capf From Staphylococcus Aureus
 pdb|3VHR|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
           Protein Capf From Staphylococcus Aureus In Space Group
           C2221
          Length = 369

 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 10/103 (9%)

Query: 237 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE-NVPAPAIAT-DYWRLPPNST 294
           +L YL S  F++ ++  +++    S+TEF+K  D+G +  N+  P I   ++W    N  
Sbjct: 239 YLSYLPSTDFSYPLLXNVDDRG--SFTEFIKTPDRGQVSVNISKPGITKGNHWHHTKNEK 296

Query: 295 LKDVV--LVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGY 335
              V    V+R    +  ++  Y    +  G +L     P+GY
Sbjct: 297 FLVVSGKGVIRFRHVNDDEIIEY----YVSGDKLEVVDIPVGY 335


>pdb|2ZKL|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling
           Protein Capf From Staphylococcus Aureus
          Length = 369

 Score = 30.4 bits (67), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 10/103 (9%)

Query: 237 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE-NVPAPAIAT-DYWRLPPNST 294
           +L YL S  F++ ++  +++    S+TEF+K  D+G +  N+  P I   ++W    N  
Sbjct: 239 YLSYLPSTDFSYPLLMNVDDRG--SFTEFIKTPDRGQVSVNISKPGITKGNHWHHTKNEK 296

Query: 295 LKDVV--LVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGY 335
              V    V+R    +  ++  Y    +  G +L     P+GY
Sbjct: 297 FLVVSGKGVIRFRHVNDDEIIEY----YVSGDKLEVVDIPVGY 335


>pdb|3AHX|A Chain A, Crystal Structure Of Beta-Glucosidase A From Bacterium
           Clostridium Cellulovorans
 pdb|3AHX|B Chain B, Crystal Structure Of Beta-Glucosidase A From Bacterium
           Clostridium Cellulovorans
 pdb|3AHX|C Chain C, Crystal Structure Of Beta-Glucosidase A From Bacterium
           Clostridium Cellulovorans
 pdb|3AHX|D Chain D, Crystal Structure Of Beta-Glucosidase A From Bacterium
           Clostridium Cellulovorans
          Length = 453

 Score = 29.3 bits (64), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 6/55 (10%)

Query: 244 PKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDV 298
           P+   +  G + ++ I  Y + + EL K +IE    PAI   +W LP    L+D+
Sbjct: 83  PRIFPKGFGEINQKGIQFYRDLIDELIKNDIE----PAITIYHWDLP--QKLQDI 131


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,844,660
Number of Sequences: 62578
Number of extensions: 394926
Number of successful extensions: 865
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 865
Number of HSP's gapped (non-prelim): 4
length of query: 336
length of database: 14,973,337
effective HSP length: 99
effective length of query: 237
effective length of database: 8,778,115
effective search space: 2080413255
effective search space used: 2080413255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)