BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019743
(336 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VPE|A Chain A, Crystallographic Analysis Of Phosphoglycerate Kinase From
The Hyperthermophilic Bacterium Thermotoga Maritima
Length = 398
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
EKPY ++GG + +K + L + D ++ G M F + ALG V VE+ D
Sbjct: 185 EKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDKIDL 244
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHP--NQVEIFPSHGIPDGWEPVDIGPRSVEEIT 123
A +L++ A++K + I+ P D + P + + GIP+GW +DIGP ++E
Sbjct: 245 AKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFK 304
Query: 124 STITKCK 130
++ K
Sbjct: 305 QKLSDAK 311
>pdb|1V6S|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Thermus
Thermophilus Hb8
pdb|1V6S|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From Thermus
Thermophilus Hb8
Length = 390
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 1/126 (0%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
E+PYA ++GG + +K + L R D L+ G M+F + ALG V LVE+ D
Sbjct: 183 ERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLDL 242
Query: 66 ASDLIQFARDKHITILYPKDFWCT-KIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
A DL+ A + + P+D +I + +FP+ IP + +DIGP++ E
Sbjct: 243 AKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFAR 302
Query: 125 TITKCK 130
+ +
Sbjct: 303 ALEGAR 308
>pdb|2IE8|A Chain A, Crystal Structure Of Thermus Caldophilus Phosphoglycerate
Kinase In The Open Conformation
Length = 390
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 1/126 (0%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
E+PYA ++GG + +K + L R D L+ G M+F + ALG V LVE+ D
Sbjct: 183 ERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLDL 242
Query: 66 ASDLIQFARDKHITILYPKDFWCT-KIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
A DL+ A + + P+D +I + +FP+ IP + +DIGP++ E
Sbjct: 243 AKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFAR 302
Query: 125 TITKCK 130
+ +
Sbjct: 303 ALEGAR 308
>pdb|13PK|A Chain A, Ternary Complex Of Phosphoglycerate Kinase From
Trypanosoma Brucei
pdb|13PK|B Chain B, Ternary Complex Of Phosphoglycerate Kinase From
Trypanosoma Brucei
pdb|13PK|C Chain C, Ternary Complex Of Phosphoglycerate Kinase From
Trypanosoma Brucei
pdb|13PK|D Chain D, Ternary Complex Of Phosphoglycerate Kinase From
Trypanosoma Brucei
pdb|16PK|A Chain A, Phosphoglycerate Kinase From Trypanosoma Brucei
Bisubstrate Analog
Length = 415
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Query: 7 KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAA 66
+P AI+GG + +K L + R D L+ G M++ + A G + E+ + A
Sbjct: 205 RPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMAYTFLKAQGYSIGKSKCEESKLEFA 264
Query: 67 SDLIQFARDKHITILYPKDFWC-TKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITST 125
L++ A D+ + ++ P D C T+ + I IP+G +DIGP+++E+ T
Sbjct: 265 RSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQT 324
Query: 126 ITKCKA 131
I KCK+
Sbjct: 325 IGKCKS 330
>pdb|3UWD|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Bacillus
Anthracis
Length = 394
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
E+P+AAIIGG + +K + L + D LI G +++ + ALG + L E +
Sbjct: 186 ERPFAAIIGGAKVKDKIGLIRHLLDKVDNLIIGGGLAYTFVKALGHEIGLSLCEDDKIEL 245
Query: 66 ASDLIQFARDKHITILYPKDFWCT-KIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
A + Q A++K + P D T + +I IP WE VDIGP++ E
Sbjct: 246 AKEFXQLAKEKGVNFYXPVDVVITEEFSETATTKIVGIDSIPSNWEGVDIGPKTREIYAD 305
Query: 125 TITKCK 130
I K
Sbjct: 306 VIKNSK 311
>pdb|1PHP|A Chain A, Structure Of The Adp Complex Of The 3-Phosphoglycerate
Kinase From Bacillus Stearothermophilus At 1.65
Angstroms
Length = 394
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
++P+ AIIGG + +K + L + D LI G +++ + ALG V L+E+ +
Sbjct: 186 DRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEEDKIEL 245
Query: 66 ASDLIQFARDKHITILYPKDFWCT-KIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
A ++ A++K + P D + + ++ P IP W +DIGP++ E
Sbjct: 246 AKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRD 305
Query: 125 TITKCK 130
I + K
Sbjct: 306 VIRESK 311
>pdb|3OZ7|A Chain A, Crystal Structure Of 3-Phosphopglycerate Kinase Of
Plasmodium Falciparum
pdb|3OZ7|B Chain B, Crystal Structure Of 3-Phosphopglycerate Kinase Of
Plasmodium Falciparum
Length = 417
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
++P AI+GG + +K + L + D +I G M++ L + + L ++ +
Sbjct: 206 QRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGMAYTFKKVLNNMKIGTSLFDEAGSK 265
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPS--HGIPDGWEPVDIGPRSVEEI 122
++++ A+ K++ I P DF N F + GIPD W +D GP+S+E
Sbjct: 266 IVGEIMEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWMGLDAGPKSIENY 325
Query: 123 TSTITKCKA 131
I K
Sbjct: 326 KDVILTSKT 334
>pdb|1FW8|A Chain A, Circularly Permuted Phosphoglycerate Kinase From Yeast:
Pgk P72
Length = 416
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 3/127 (2%)
Query: 7 KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGANDA 65
+P+ AI+GG + +K + L + D +I G M+F L + + +K +
Sbjct: 133 RPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEI 192
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHP--NQVEIFPSHGIPDGWEPVDIGPRSVEEIT 123
L++ A+ K + ++ P DF N + GIP GW+ +D GP S +
Sbjct: 193 VPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFA 252
Query: 124 STITKCK 130
+T+ K K
Sbjct: 253 ATVAKAK 259
>pdb|1QPG|A Chain A, 3-Phosphoglycerate Kinase, Mutation R65q
Length = 415
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 3/127 (2%)
Query: 7 KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGANDA 65
+P+ AI+GG + +K + L + D +I G M+F L + + +K +
Sbjct: 203 RPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAEI 262
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHP--NQVEIFPSHGIPDGWEPVDIGPRSVEEIT 123
L++ A+ K + ++ P DF N + GIP GW+ +D GP S +
Sbjct: 263 VPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLFA 322
Query: 124 STITKCK 130
+T+ K K
Sbjct: 323 ATVAKAK 329
>pdb|4DG5|A Chain A, Crystal Structure Of Staphylococcal Phosphoglycerate
Kinase
Length = 403
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 7 KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAA 66
KP AI+GG + +K + L + D +I G M++ + A G + L+E+ D A
Sbjct: 199 KPVVAILGGAKVSDKINVIKNLVNIADKIIIGGGMAYTFLKAQGKEIGISLLEEDKIDFA 258
Query: 67 SDLIQFARDKHITILYPKDFWCTK-IHHPNQVEIFPSHGIPDGWEPVDIGPRSVE 120
DL++ DK I+ P D K + ++ + PS IP E +DIGP +V+
Sbjct: 259 KDLLEKHGDK---IVLPVDTKVAKEFSNDAKITVVPSDSIPADQEGMDIGPNTVK 310
>pdb|3PGK|A Chain A, The Structure Of Yeast Phosphoglycerate Kinase At 0.25 Nm
Resolution
Length = 416
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 3/126 (2%)
Query: 7 KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGANDA 65
+P+ AI+GG + +K + L + D +I G M+F L + + +K
Sbjct: 204 RPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAVGPE 263
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHP--NQVEIFPSHGIPDGWEPVDIGPRSVEEIT 123
+ L++ A+ K + ++ P DF N + GIP GW+ +D GP S +
Sbjct: 264 IAKLMEKAKAKGVEVVLPVDFIIADAFSASANTKTVTDKEGIPAGWQGLDNGPESRKLFA 323
Query: 124 STITKC 129
+T+ K
Sbjct: 324 ATVAKA 329
>pdb|2XE6|A Chain A, The Complete Reaction Cycle Of Human Phosphoglycerate
Kinase: The Open Binary Complex With 3pg
pdb|2XE7|A Chain A, The Complete Reaction Cycle Of Human Phosphoglycerate
Kinase: The Open Ternary Complex With 3pg And Adp
pdb|2XE8|A Chain A, The Complete Reaction Cycle Of Human Phosphoglycerate
Kinase: The Open Ternary Complex With 3pg And Amp-Pnp
pdb|2YBE|A Chain A, The Structure Of The Fully Closed Conformation Of Human
Pgk In Complex With L-Adp, 3pg And The Tsa Aluminium
Tetrafluoride At 2.0 A Resolution
Length = 417
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
E+P+ AI+GG + +K ++ + + + +I G M+F + L + + L ++
Sbjct: 205 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 264
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
DL+ A + I P DF N + + GIP GW +D GP S ++
Sbjct: 265 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 324
Query: 123 TSTITKCK 130
+T+ K
Sbjct: 325 AEAVTRAK 332
>pdb|2Y3I|A Chain A, The Structure Of The Fully Closed Conformation Of Human
Pgk In Complex With L-Adp, 3pg And The Tsa Aluminium
Tetrafluoride
pdb|2Y3I|D Chain D, The Structure Of The Fully Closed Conformation Of Human
Pgk In Complex With L-Adp, 3pg And The Tsa Aluminium
Tetrafluoride
Length = 416
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
E+P+ AI+GG + +K ++ + + + +I G M+F + L + + L ++
Sbjct: 205 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 264
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
DL+ A + I P DF N + + GIP GW +D GP S ++
Sbjct: 265 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 324
Query: 123 TSTITKCK 130
+T+ K
Sbjct: 325 AEAVTRAK 332
>pdb|2ZGV|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To D-Adp
pdb|3C39|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate
pdb|3C39|B Chain B, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate
pdb|3C3A|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate And L-Adp
pdb|3C3A|B Chain B, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate And L-Adp
pdb|3C3B|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To D-Cdp
pdb|3C3B|B Chain B, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To D-Cdp
pdb|3C3C|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate And L-Cdp
pdb|3C3C|B Chain B, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate And L-Cdp
Length = 420
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
E+P+ AI+GG + +K ++ + + + +I G M+F + L + + L ++
Sbjct: 208 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 267
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
DL+ A + I P DF N + + GIP GW +D GP S ++
Sbjct: 268 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 327
Query: 123 TSTITKCK 130
+T+ K
Sbjct: 328 AEAVTRAK 335
>pdb|2WZB|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase In Complex With Adp, 3pg
And Magnesium Trifluoride
pdb|2WZC|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase In Complex With Adp, 3pg
And Aluminium Tetrafluoride
pdb|2X13|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase In Complex With Adp And
3phosphoglycerate
pdb|2X15|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase In Complex With Adp And
1,3- Bisphosphoglycerate
Length = 416
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
E+P+ AI+GG + +K ++ + + + +I G M+F + L + + L ++
Sbjct: 204 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 263
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
DL+ A + I P DF N + + GIP GW +D GP S ++
Sbjct: 264 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 323
Query: 123 TSTITKCK 130
+T+ K
Sbjct: 324 AEAVTRAK 331
>pdb|1VJC|A Chain A, Structure Of Pig Muscle Pgk Complexed With Mgatp
pdb|1VJD|A Chain A, Structure Of Pig Muscle Pgk Complexed With Atp
Length = 416
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 3/128 (2%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
E+P+ AI+GG + +K ++ + + + +I G M+F + L + + L ++ +
Sbjct: 204 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGSK 263
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
DL+ A + I P DF N + + GIP GW +D GP S ++
Sbjct: 264 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 323
Query: 123 TSTITKCK 130
+ + + K
Sbjct: 324 SEAVARAK 331
>pdb|3Q3V|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From
Campylobacter Jejuni.
pdb|3Q3V|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From
Campylobacter Jejuni
Length = 403
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 1/127 (0%)
Query: 7 KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAA 66
+P+ A++GG + K AL L + D LI G +F + ALG + L+E+ + A
Sbjct: 194 RPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGXAFTFLKALGYDIGNSLLEEELLEEA 253
Query: 67 SDLIQFARDKHITILYPKDFWCTKIHHPNQVEIF-PSHGIPDGWEPVDIGPRSVEEITST 125
+ ++ ++ + I P D + F P+ IP+GW +DIGP SV
Sbjct: 254 NKILTKGKNLGVKIYLPVDVVAAPACSQDVPXKFVPAQEIPNGWXGLDIGPASVRLFKEV 313
Query: 126 ITKCKAF 132
I+ +
Sbjct: 314 ISDAQTI 320
>pdb|3CKK|A Chain A, Crystal Structure Of Human Methyltransferase-Like Protein
1
Length = 235
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 8/151 (5%)
Query: 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL------SGITNGY 199
AQ DIG G G L+ ++ D LGLE+ K+ + +D ++ G N
Sbjct: 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIA 105
Query: 200 FIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGK 259
+ +NA + Y G+L + P+P F R +H+WR++ +L+ + +L G
Sbjct: 106 CLRSNAMKHLPNFF--YKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGL 163
Query: 260 VFLQSDIEEVMLRMKQQFLEYGKGKLVLVQD 290
V+ +D+ E+ M F E+ + V ++D
Sbjct: 164 VYTITDVLELHDWMCTHFEEHPLFERVPLED 194
>pdb|1KF0|A Chain A, Crystal Structure Of Pig Muscle Phosphoglycerate Kinase
Ternary Complex With Amp-Pcp And 3pg
Length = 416
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
E+P+ AI+GG + +K ++ + + + +I G M+F + L + + L ++
Sbjct: 204 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 263
Query: 65 AASDLIQFARDKHITILYPKDFWCTKI--HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
+L+ A + I P DF H + + GIP GW +D GP S ++
Sbjct: 264 IVKNLMSKAEKNGVKITLPVDFVTADKFDEHAKTGQATVASGIPAGWMGLDCGPESSKKY 323
Query: 123 TSTITKCK 130
+ + + K
Sbjct: 324 SEAVARAK 331
>pdb|2X14|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase K219a Mutant In Complex
With Amp-Pcp And 3pg
Length = 416
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 3/128 (2%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
E+P+ AI+GG + + ++ + + + +I G M+F + L + + L ++
Sbjct: 204 ERPFLAILGGAKVADAIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 263
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
DL+ A + I P DF N + + GIP GW +D GP S ++
Sbjct: 264 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 323
Query: 123 TSTITKCK 130
+T+ K
Sbjct: 324 AEAVTRAK 331
>pdb|2WZD|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase K219a Mutant In Complex
With Adp, 3pg And Aluminium Trifluoride
Length = 417
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 3/128 (2%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
E+P+ AI+GG + + ++ + + + +I G M+F + L + + L ++
Sbjct: 205 ERPFLAILGGAKVADAIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 264
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIHHPNQV--EIFPSHGIPDGWEPVDIGPRSVEEI 122
DL+ A + I P DF N + + GIP GW +D GP S ++
Sbjct: 265 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 324
Query: 123 TSTITKCK 130
+T+ K
Sbjct: 325 AEAVTRAK 332
>pdb|3OZA|A Chain A, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
pdb|3OZA|B Chain B, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
pdb|3OZA|C Chain C, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
Length = 424
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 3/129 (2%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
++P AI+GG + +K + L + D I G ++ L + L ++ +
Sbjct: 212 QRPLLAILGGAKVSDKIQLIKNLLDKVDRXIIGGGXAYTFKKVLNNXKIGTSLFDEAGSK 271
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPS--HGIPDGWEPVDIGPRSVEEI 122
++ + A+ K++ I P DF N F + GIPD W +D GP+S+E
Sbjct: 272 IVGEIXEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWXGLDAGPKSIENY 331
Query: 123 TSTITKCKA 131
I K
Sbjct: 332 KDVILTSKT 340
>pdb|1LTK|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
pdb|1LTK|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
pdb|1LTK|C Chain C, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
Length = 425
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 3/129 (2%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALG-LPVPPELVEKGAND 64
++P AI+GG + +K + L + D I G ++ L + L ++ +
Sbjct: 213 QRPLLAILGGAKVSDKIQLIKNLLDKVDRXIIGGGXAYTFKKVLNNXKIGTSLFDEAGSK 272
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPS--HGIPDGWEPVDIGPRSVEEI 122
++ + A+ K++ I P DF N F + GIPD W +D GP+S+E
Sbjct: 273 IVGEIXEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWXGLDAGPKSIENY 332
Query: 123 TSTITKCKA 131
I K
Sbjct: 333 KDVILTSKT 341
>pdb|1HDI|A Chain A, Pig Muscle 3-Phosphoglycerate Kinase Complexed With 3-Pg
And Mgadp
Length = 413
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
E+P+ AI+GG + +K ++ + + + +I G M+F + L + + L ++
Sbjct: 201 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEAGKK 260
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIHHPNQVEI---FPSHGIPDGWEPVDIGPRSVEE 121
+L+ A + I P DF T Q +I + GIP GW +D GP+S +
Sbjct: 261 IVKNLMSKAAANGVKITLPVDF-VTADKFDEQAKIGQATVASGIPAGWMGLDCGPKSSAK 319
Query: 122 ITSTITKCK 130
+ + + K
Sbjct: 320 YSEAVARAK 328
>pdb|3DXX|A Chain A, Crystal Structure Of Ectrmb
pdb|3DXY|A Chain A, Crystal Structure Of Ectrmb In Complex With Sam
pdb|3DXZ|A Chain A, Crystal Structure Of Ectrmb In Complex With Sah
Length = 218
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 3/132 (2%)
Query: 136 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI 195
+D+ A + A P+ ++IG G G L+ MA+ R + +FLG+EV+ V C S G+
Sbjct: 25 LDFPALFGREA-PVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGL 83
Query: 196 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 255
+N + +A ++ L +V + P+P ++ R+VQ E V L
Sbjct: 84 SNLRVMCHDAVEVLHKMIPD--NSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQ 141
Query: 256 HDGKVFLQSDIE 267
G + +D E
Sbjct: 142 LGGVFHMATDWE 153
>pdb|1YZH|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein,
Methyltransferase From Streptococcus Pneumoniae Tigr4
pdb|1YZH|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein,
Methyltransferase From Streptococcus Pneumoniae Tigr4
Length = 214
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/184 (19%), Positives = 86/184 (46%), Gaps = 18/184 (9%)
Query: 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFI---AT 203
P+ V++GSG G F+ G A++ D+N++G+++ ++++ D + G+ N + +
Sbjct: 42 NPIHVEVGSGKGAFVSGXAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGS 101
Query: 204 NATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 263
+ T F G++ + + +P + + R+ ++ ++ +L +G++ +
Sbjct: 102 DLTDYFED------GEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 155
Query: 264 SDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAP 323
+D + F +YG KL V + +G V +++EQ ++G
Sbjct: 156 TDNRGLFEYSLVSFSQYGX-KLNGVWLDLHASDFEG--------NVXTEYEQKFSNKGQV 206
Query: 324 MYRL 327
+YR+
Sbjct: 207 IYRV 210
>pdb|2FCA|A Chain A, The Structure Of Bstrmb
pdb|2FCA|B Chain B, The Structure Of Bstrmb
Length = 213
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 82/181 (45%), Gaps = 14/181 (7%)
Query: 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNAT 206
P+ +++G+G G F+ GMA++ D+N++G+E+ ++ ++ S N + +A
Sbjct: 39 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDA- 97
Query: 207 STFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 266
T + PG++ V + +P + + R+ ++ +++ G + ++D
Sbjct: 98 DTLTDVFE--PGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN 155
Query: 267 EEVMLRMKQQFLEYGKGKLVLVQDECDT-KTNQGGWLGENSFGVRSDWEQHVIDRGAPMY 325
+ + F EYG L+L D +N G + +++E+ G P+Y
Sbjct: 156 RGLFEYSLKSFSEYG---LLLTYVSLDLHNSNLEG-------NIMTEYEEKFSALGQPIY 205
Query: 326 R 326
R
Sbjct: 206 R 206
>pdb|2P9Q|A Chain A, Crystal Structure Of Phosphoglycerate Kinase-2
pdb|2P9Q|B Chain B, Crystal Structure Of Phosphoglycerate Kinase-2
pdb|2P9T|A Chain A, Crystal Structure Of Phosphoglycerate Kinase-2 Bound To 3-
Phosphoglycerate
pdb|2PAA|A Chain A, Crystal Structure Of Phosphoglycerate Kinase-2 Bound To
Atp And 3pg
pdb|2PAA|B Chain B, Crystal Structure Of Phosphoglycerate Kinase-2 Bound To
Atp And 3pg
Length = 416
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
E+P+ AI+GG + +K + + + + +I G M++ + L + + L ++
Sbjct: 204 ERPFLAILGGAKVKDKIQLIKNMLDKVNFMIIGGGMAYTFLKELKNMQIGASLFDEEGAT 263
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIHHPN----QVEIFPSHGIPDGWEPVDIGPRSVE 120
++++ A + I++P DF N Q I GIP GW +D GP S++
Sbjct: 264 IVKEIMEKAEKNGVKIVFPVDFVTGDKFDENAKVGQATI--ESGIPSGWMGLDCGPESIK 321
Query: 121 EITSTITKCK 130
+ + K
Sbjct: 322 INAQIVAQAK 331
>pdb|4FEY|A Chain A, An X-Ray Structure Of A Putative Phosphogylcerate Kinase
With Bound Adp From Francisella Tularensis Subsp.
Tularensis Schu S4
Length = 395
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
+KP AAI+GG + K + L+ L + + LI G ++ + A G V L E+
Sbjct: 185 KKPMAAIVGGSKVSTKLSVLNNLLDKVEILIVGGGIANTFIKAEGFDVGNSLYEQDLVAE 244
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFP--SHGIPDGWEPVDIGPRS 118
A++++ A+ + I P D K N I S + D +DIGP S
Sbjct: 245 ATEILAKAKALGVNIPVPVDVRVAKEFSENAQAIIKKVSDVVADEM-ILDIGPES 298
>pdb|4EHJ|A Chain A, An X-Ray Structure Of A Putative Phosphogylcerate Kinase
From Francisella Tularensis Subsp. Tularensis Schu S4
pdb|4EHJ|B Chain B, An X-Ray Structure Of A Putative Phosphogylcerate Kinase
From Francisella Tularensis Subsp. Tularensis Schu S4
Length = 392
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
+KP AAI+GG + K + L+ L + + LI G ++ + A G V L E+
Sbjct: 182 KKPXAAIVGGSKVSTKLSVLNNLLDKVEILIVGGGIANTFIKAEGFDVGNSLYEQDLVAE 241
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRS 118
A++++ A+ + I P D K N Q I + +DIGP S
Sbjct: 242 ATEILAKAKALGVNIPVPVDVRVAKEFSENAQAIIKKVSDVVADEXILDIGPES 295
>pdb|2VDV|E Chain E, Structure Of Trm8, M7g Methylation Enzyme
pdb|2VDV|F Chain F, Structure Of Trm8, M7g Methylation Enzyme
Length = 246
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/165 (20%), Positives = 69/165 (41%), Gaps = 19/165 (11%)
Query: 133 PFDIDWSAAY---------HDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLV 183
P D+DWS Y + + DIG G G ++ ++ + LG+E+ ++
Sbjct: 27 PQDMDWSKLYPYYKNAENGQMTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVT 86
Query: 184 THCRDSL--------QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRP 235
+ D + G N + NA + G+L + P+P F +
Sbjct: 87 NYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK--GQLSKMFFCFPDPHFKQR 144
Query: 236 EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY 280
+H+ R++ +L+ + +L G V+ +D++++ M + E+
Sbjct: 145 KHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEH 189
>pdb|2VDU|E Chain E, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|F Chain F, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 254
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/165 (20%), Positives = 69/165 (41%), Gaps = 19/165 (11%)
Query: 133 PFDIDWSAAY---------HDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLV 183
P D+DWS Y + + DIG G G ++ ++ + LG+E+ ++
Sbjct: 35 PQDMDWSKLYPYYKNAENGQMTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVT 94
Query: 184 THCRDSL--------QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRP 235
+ D + G N + NA + G+L + P+P F +
Sbjct: 95 NYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK--GQLSKMFFCFPDPHFKQR 152
Query: 236 EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY 280
+H+ R++ +L+ + +L G V+ +D++++ M + E+
Sbjct: 153 KHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEH 197
>pdb|1ZMR|A Chain A, Crystal Structure Of The E. Coli Phosphoglycerate Kinase
Length = 387
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 47/125 (37%), Gaps = 6/125 (4%)
Query: 7 KPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAA 66
+P AI+GG + K L L+ D LI G ++ + A G V L E D A
Sbjct: 183 RPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFIAAQGHDVGKSLYEADLVDEA 242
Query: 67 SDLIQFARDKHITILYPKDFW-CTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITST 125
L+ I P D T+ + + + + +DIG S +E+
Sbjct: 243 KRLLT-----TCNIPVPSDVRVATEFSETAPATLKSVNDVKADEQILDIGDASAQELAEI 297
Query: 126 ITKCK 130
+ K
Sbjct: 298 LKNAK 302
>pdb|2B3T|A Chain A, Molecular Basis For Bacterial Class 1 Release Factor
Methylation By Prmc
Length = 276
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 145 PAQPL-VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT 203
P QP ++D+G+G G L +A +R D + ++ V+ + + Q I N + + +
Sbjct: 107 PEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQS 166
Query: 204 N-----ATSTFRSIVASYP 217
+ A F IV++ P
Sbjct: 167 DWFSALAGQQFAMIVSNPP 185
>pdb|1T43|A Chain A, Crystal Structure Analysis Of E.Coli Protein
(N5)-Glutamine Methyltransferase (Hemk)
Length = 277
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 145 PAQPL-VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT 203
P QP ++D+G+G G L +A +R D + ++ V+ + + Q I N + + +
Sbjct: 107 PEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQS 166
Query: 204 N-----ATSTFRSIVASYP 217
+ A F IV++ P
Sbjct: 167 DWFSALAGQQFAMIVSNPP 185
>pdb|3EJG|A Chain A, Crystal Structure Of Hcov-229e X-Domain
Length = 193
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 228 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM 270
P D++ P Q ++ E ++ LVHD F Q D++ V+
Sbjct: 9 PMSDYDIPTTENLYFQGAMAEKLNAFLVHDNVAFYQGDVDTVV 51
>pdb|3PGV|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Kpn_04322) From Klebsiella Pneumoniae Subsp.
Pneumoniae Mgh 78578 At 2.39 A Resolution
pdb|3PGV|B Chain B, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Kpn_04322) From Klebsiella Pneumoniae Subsp.
Pneumoniae Mgh 78578 At 2.39 A Resolution
pdb|3PGV|C Chain C, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Kpn_04322) From Klebsiella Pneumoniae Subsp.
Pneumoniae Mgh 78578 At 2.39 A Resolution
pdb|3PGV|D Chain D, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Kpn_04322) From Klebsiella Pneumoniae Subsp.
Pneumoniae Mgh 78578 At 2.39 A Resolution
Length = 285
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 64 DAASDLIQFARD--KHITILYPKDFWCTKIHHPNQVEIFPSHGIPDG-WEPVDIGPRSVE 120
D A+DL + R+ K +T +Y +D W H P + F +EP ++ P+ +
Sbjct: 105 DIAADLFEIVRNDPKIVTNVYREDEWYXNRHRPEEXRFFKEAVFNYKLYEPGELDPQGIS 164
Query: 121 EITST 125
++ T
Sbjct: 165 KVFFT 169
>pdb|2CH1|A Chain A, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH1|B Chain B, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH1|C Chain C, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH1|D Chain D, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH2|A Chain A, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
pdb|2CH2|B Chain B, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
pdb|2CH2|C Chain C, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
pdb|2CH2|D Chain D, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
Length = 396
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 104 GIPDGWEPVDIGPRSVEEITSTITKCKAFPFDI----DWSAAYHDPAQ 147
G P G P+ I P++++ I + TK K F +D+ ++ Y +P +
Sbjct: 208 GAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKR 255
>pdb|2JLA|A Chain A, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Semet Protein
pdb|2JLA|B Chain B, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Semet Protein
pdb|2JLA|C Chain C, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Semet Protein
pdb|2JLA|D Chain D, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Semet Protein
Length = 558
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 1 MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEK 60
+AK+ ++P A I+ G +A+ LI GL +++ L PPEL++
Sbjct: 67 LAKVSKQPVAVIVTSGTA---------VANLYPALIEAGLTGEKLI-LLTADRPPELIDC 116
Query: 61 GANDAASDLIQFARDKHITILYPK 84
GAN A FA +I P+
Sbjct: 117 GANQAIRQPGXFASHPTHSISLPR 140
>pdb|2JLC|A Chain A, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Native Protein
pdb|2JLC|B Chain B, Crystal Structure Of E.Coli Mend,
2-Succinyl-5-Enolpyruvyl-
6-Hydroxy-3-Cyclohexadiene-1-Carboxylate Synthase -
Native Protein
Length = 577
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 1 MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEK 60
+AK+ ++P A I+ G +A+ LI GL +++ L PPEL++
Sbjct: 86 LAKVSKQPVAVIVTSGTA---------VANLYPALIEAGLTGEKLI-LLTADRPPELIDC 135
Query: 61 GANDAASDLIQFARDKHITILYPK 84
GAN A FA +I P+
Sbjct: 136 GANQAIRQPGMFASHPTHSISLPR 159
>pdb|3FLM|A Chain A, Crystal Structure Of Mend From E.Coli
pdb|3FLM|B Chain B, Crystal Structure Of Mend From E.Coli
pdb|3HWW|A Chain A, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Oxoglutarate
pdb|3HWW|D Chain D, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Oxoglutarate
pdb|3HWX|A Chain A, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|B Chain B, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|I Chain I, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|J Chain J, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|R Chain R, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|S Chain S, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|Z Chain Z, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
pdb|3HWX|1 Chain 1, Crystal Structure Of Menaquinone Synthesis Protein Mend
From E. Coli In Complex With Thdp
Length = 556
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 1 MAKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEK 60
+AK+ ++P A I+ G +A+ LI GL +++ L PPEL++
Sbjct: 65 LAKVSKQPVAVIVTSGTA---------VANLYPALIEAGLTGEKLI-LLTADRPPELIDC 114
Query: 61 GANDAASDLIQFARDKHITILYPK 84
GAN A FA +I P+
Sbjct: 115 GANQAIRQPGMFASHPTHSISLPR 138
>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
pdb|3LST|B Chain B, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
Length = 348
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 145 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG---ITNGYFI 201
PA V D+G G G FLL + R+ L + L+ + H D+ ++G + G F+
Sbjct: 183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFL 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,525,034
Number of Sequences: 62578
Number of extensions: 440237
Number of successful extensions: 977
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 913
Number of HSP's gapped (non-prelim): 49
length of query: 336
length of database: 14,973,337
effective HSP length: 99
effective length of query: 237
effective length of database: 8,778,115
effective search space: 2080413255
effective search space used: 2080413255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)