Query 019743
Match_columns 336
No_of_seqs 422 out of 3126
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 04:11:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019743.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019743hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00318 Phosphoglycerate_kinas 100.0 4.8E-34 1E-38 267.3 12.6 159 2-167 184-343 (397)
2 PRK00073 pgk phosphoglycerate 100.0 7.8E-34 1.7E-38 265.2 13.5 166 2-175 180-345 (389)
3 COG0126 Pgk 3-phosphoglycerate 100.0 3.9E-34 8.4E-39 262.4 11.1 162 2-175 186-348 (395)
4 PF02390 Methyltransf_4: Putat 100.0 2.1E-32 4.7E-37 237.0 18.5 187 135-332 7-195 (195)
5 PLN03034 phosphoglycerate kina 100.0 1.7E-33 3.7E-38 266.4 12.5 158 2-166 262-420 (481)
6 PLN02282 phosphoglycerate kina 100.0 1.6E-33 3.4E-38 263.7 11.9 168 2-176 187-357 (401)
7 PF00162 PGK: Phosphoglycerate 100.0 4.3E-33 9.4E-38 260.9 10.7 166 2-175 184-350 (384)
8 PTZ00005 phosphoglycerate kina 100.0 2.8E-32 6.1E-37 256.5 13.1 168 2-176 201-373 (417)
9 COG0220 Predicted S-adenosylme 100.0 6.6E-31 1.4E-35 231.1 20.5 189 136-333 38-226 (227)
10 PRK13962 bifunctional phosphog 100.0 8.9E-32 1.9E-36 266.1 14.3 139 2-144 183-322 (645)
11 TIGR00091 tRNA (guanine-N(7)-) 100.0 1.2E-29 2.7E-34 220.4 20.6 183 136-332 7-193 (194)
12 KOG1367 3-phosphoglycerate kin 100.0 4.8E-31 1E-35 233.0 8.4 159 2-167 199-360 (416)
13 COG2890 HemK Methylase of poly 100.0 1.6E-28 3.6E-33 224.0 16.1 205 58-290 48-264 (280)
14 PRK14121 tRNA (guanine-N(7)-)- 100.0 2.7E-27 5.9E-32 222.0 22.1 169 146-333 122-290 (390)
15 PRK14966 unknown domain/N5-glu 100.0 4.8E-27 1E-31 221.5 18.8 201 59-290 191-406 (423)
16 PRK01544 bifunctional N5-gluta 99.9 1.5E-26 3.3E-31 227.4 17.3 218 59-290 52-294 (506)
17 TIGR00536 hemK_fam HemK family 99.9 3.4E-26 7.3E-31 210.2 16.8 205 60-290 52-270 (284)
18 TIGR03533 L3_gln_methyl protei 99.9 4E-25 8.6E-30 202.7 17.8 202 58-285 56-270 (284)
19 PRK11805 N5-glutamine S-adenos 99.9 2.6E-24 5.5E-29 199.2 16.7 200 62-287 72-284 (307)
20 PRK01544 bifunctional N5-gluta 99.9 4.3E-24 9.3E-29 210.0 18.2 168 135-317 337-505 (506)
21 PRK00121 trmB tRNA (guanine-N( 99.9 1.7E-23 3.7E-28 182.9 18.7 172 135-319 30-201 (202)
22 TIGR03704 PrmC_rel_meth putati 99.9 1.3E-23 2.9E-28 189.3 15.7 197 63-288 27-239 (251)
23 KOG2904 Predicted methyltransf 99.9 2E-23 4.3E-28 182.6 14.2 167 81-266 100-287 (328)
24 PRK09328 N5-glutamine S-adenos 99.9 2.2E-22 4.9E-27 184.1 16.0 201 62-290 49-263 (275)
25 TIGR03534 RF_mod_PrmC protein- 99.9 4.7E-21 1E-25 172.9 16.3 202 60-290 27-242 (251)
26 PLN02672 methionine S-methyltr 99.9 3E-21 6.5E-26 200.6 15.8 181 88-289 79-303 (1082)
27 COG4123 Predicted O-methyltran 99.8 7.8E-18 1.7E-22 148.8 12.0 138 147-286 45-191 (248)
28 PF05175 MTS: Methyltransferas 99.7 1.3E-17 2.8E-22 141.9 9.0 105 147-265 32-141 (170)
29 KOG3115 Methyltransferase-like 99.7 1.7E-16 3.8E-21 133.4 9.5 188 135-335 44-247 (249)
30 PRK07402 precorrin-6B methylas 99.7 3.5E-15 7.7E-20 129.8 17.9 120 147-282 41-160 (196)
31 TIGR00537 hemK_rel_arch HemK-r 99.7 8.8E-16 1.9E-20 131.7 13.7 137 147-287 20-163 (179)
32 COG2226 UbiE Methylase involve 99.7 6.9E-16 1.5E-20 136.4 11.5 103 147-262 52-154 (238)
33 PRK08287 cobalt-precorrin-6Y C 99.7 4.2E-15 9.2E-20 128.4 15.8 123 147-287 32-154 (187)
34 COG2242 CobL Precorrin-6B meth 99.6 1.7E-14 3.8E-19 121.4 17.7 121 146-283 34-154 (187)
35 PRK15001 SAM-dependent 23S rib 99.6 1.4E-15 3.1E-20 143.7 10.8 115 148-276 230-353 (378)
36 PRK00107 gidB 16S rRNA methylt 99.6 8.7E-15 1.9E-19 126.0 14.7 122 147-287 46-167 (187)
37 COG2813 RsmC 16S RNA G1207 met 99.6 2.3E-15 5E-20 135.8 11.0 117 147-277 159-280 (300)
38 PF12847 Methyltransf_18: Meth 99.6 5.1E-15 1.1E-19 116.6 10.4 108 147-264 2-111 (112)
39 PRK14967 putative methyltransf 99.6 3.4E-14 7.3E-19 126.2 15.7 136 147-285 37-180 (223)
40 TIGR00138 gidB 16S rRNA methyl 99.6 2.3E-14 5.1E-19 122.9 13.9 120 147-285 43-165 (181)
41 PF01209 Ubie_methyltran: ubiE 99.6 9.4E-15 2E-19 130.1 10.1 103 147-262 48-151 (233)
42 COG2519 GCD14 tRNA(1-methylade 99.6 6.3E-14 1.4E-18 123.1 14.3 124 146-288 94-219 (256)
43 PF13847 Methyltransf_31: Meth 99.6 6.2E-14 1.3E-18 116.9 13.4 109 146-266 3-112 (152)
44 PRK00377 cbiT cobalt-precorrin 99.5 2.5E-13 5.3E-18 118.4 16.5 122 147-283 41-164 (198)
45 PRK14968 putative methyltransf 99.5 5.6E-14 1.2E-18 121.0 12.2 139 147-288 24-172 (188)
46 PLN02336 phosphoethanolamine N 99.5 1.1E-13 2.3E-18 136.4 15.7 137 84-264 228-369 (475)
47 TIGR02752 MenG_heptapren 2-hep 99.5 1.6E-13 3.5E-18 122.3 14.4 105 147-264 46-151 (231)
48 PLN02233 ubiquinone biosynthes 99.5 3.2E-13 6.9E-18 122.7 15.3 104 147-263 74-181 (261)
49 PF13659 Methyltransf_26: Meth 99.5 1.8E-13 3.9E-18 108.7 11.9 114 148-265 2-116 (117)
50 PRK00517 prmA ribosomal protei 99.5 2E-13 4.3E-18 123.3 13.5 118 147-289 120-238 (250)
51 TIGR02469 CbiT precorrin-6Y C5 99.5 1.9E-13 4.2E-18 109.2 12.0 103 147-264 20-122 (124)
52 PF08704 GCD14: tRNA methyltra 99.5 2.8E-13 6E-18 120.9 13.7 126 146-287 40-169 (247)
53 PRK10909 rsmD 16S rRNA m(2)G96 99.5 3.2E-13 6.9E-18 117.3 13.5 146 86-266 14-161 (199)
54 PRK09489 rsmC 16S ribosomal RN 99.5 1.4E-13 3E-18 129.3 10.7 115 147-276 197-316 (342)
55 PRK04266 fibrillarin; Provisio 99.5 6.4E-13 1.4E-17 117.8 13.4 129 146-288 72-209 (226)
56 PRK15451 tRNA cmo(5)U34 methyl 99.5 7.4E-13 1.6E-17 119.4 13.4 104 147-263 57-163 (247)
57 PLN02244 tocopherol O-methyltr 99.5 9.3E-13 2E-17 124.1 14.5 105 146-264 118-223 (340)
58 KOG1540 Ubiquinone biosynthesi 99.5 8.5E-13 1.8E-17 115.3 12.9 164 146-326 100-278 (296)
59 PRK11036 putative S-adenosyl-L 99.5 9.7E-13 2.1E-17 119.2 13.9 104 147-264 45-149 (255)
60 PLN02490 MPBQ/MSBQ methyltrans 99.5 3.5E-12 7.7E-17 119.1 17.0 147 113-287 92-254 (340)
61 TIGR01177 conserved hypothetic 99.4 2.5E-13 5.4E-18 127.5 8.8 125 147-287 183-313 (329)
62 COG2264 PrmA Ribosomal protein 99.4 1.4E-12 3.1E-17 118.4 13.2 126 146-289 162-288 (300)
63 TIGR00406 prmA ribosomal prote 99.4 4.3E-12 9.3E-17 116.9 16.5 122 147-288 160-282 (288)
64 PRK14103 trans-aconitate 2-met 99.4 1.9E-12 4.2E-17 117.2 14.0 98 146-264 29-126 (255)
65 PRK11873 arsM arsenite S-adeno 99.4 7.8E-12 1.7E-16 114.3 18.0 130 146-288 77-229 (272)
66 PF08241 Methyltransf_11: Meth 99.4 2.2E-13 4.9E-18 103.3 6.5 95 151-262 1-95 (95)
67 PRK13168 rumA 23S rRNA m(5)U19 99.4 2.4E-12 5.1E-17 125.6 15.0 125 147-288 298-423 (443)
68 KOG3191 Predicted N6-DNA-methy 99.4 1.5E-12 3.3E-17 108.1 11.6 164 112-287 19-191 (209)
69 TIGR00740 methyltransferase, p 99.4 1.4E-12 3.1E-17 116.9 11.9 104 147-263 54-160 (239)
70 COG2227 UbiG 2-polyprenyl-3-me 99.4 1.1E-12 2.3E-17 114.5 10.6 109 147-276 60-173 (243)
71 PLN02781 Probable caffeoyl-CoA 99.4 3.9E-12 8.5E-17 113.6 14.3 105 147-262 69-176 (234)
72 PLN02396 hexaprenyldihydroxybe 99.4 2.7E-12 5.8E-17 119.4 13.7 155 147-327 132-287 (322)
73 PHA03411 putative methyltransf 99.4 2.6E-12 5.7E-17 115.4 12.9 130 147-283 65-208 (279)
74 PRK11207 tellurite resistance 99.4 2.9E-12 6.2E-17 111.6 12.2 102 147-262 31-132 (197)
75 COG2230 Cfa Cyclopropane fatty 99.4 2.8E-12 6.1E-17 115.6 11.8 104 146-264 72-176 (283)
76 TIGR00080 pimt protein-L-isoas 99.4 2.9E-12 6.4E-17 113.1 11.8 100 147-265 78-178 (215)
77 PRK01683 trans-aconitate 2-met 99.4 9.8E-12 2.1E-16 112.7 15.5 99 147-264 32-130 (258)
78 PHA03412 putative methyltransf 99.4 3.8E-13 8.3E-18 118.2 6.0 103 147-262 50-160 (241)
79 PF06325 PrmA: Ribosomal prote 99.4 2.3E-12 4.9E-17 118.1 11.3 121 147-289 162-283 (295)
80 PF02353 CMAS: Mycolic acid cy 99.4 6.7E-12 1.5E-16 114.3 14.0 104 146-264 62-166 (273)
81 PRK11783 rlmL 23S rRNA m(2)G24 99.4 4.2E-12 9.2E-17 130.1 12.8 132 147-288 539-679 (702)
82 PF08242 Methyltransf_12: Meth 99.4 1.2E-13 2.6E-18 106.5 1.0 99 151-260 1-99 (99)
83 KOG1271 Methyltransferases [Ge 99.4 3.2E-12 7E-17 106.2 8.6 126 147-284 68-200 (227)
84 COG4106 Tam Trans-aconitate me 99.4 4.8E-12 1E-16 108.1 9.8 143 147-324 31-181 (257)
85 PF13649 Methyltransf_25: Meth 99.4 2.2E-12 4.7E-17 99.9 7.2 98 150-258 1-101 (101)
86 TIGR00477 tehB tellurite resis 99.3 1.1E-11 2.4E-16 107.7 12.5 101 147-262 31-131 (195)
87 PTZ00098 phosphoethanolamine N 99.3 4E-11 8.6E-16 109.1 16.3 103 147-263 53-155 (263)
88 PRK14902 16S rRNA methyltransf 99.3 6.9E-12 1.5E-16 122.4 12.1 138 147-284 251-403 (444)
89 PF01596 Methyltransf_3: O-met 99.3 2E-11 4.4E-16 106.4 13.3 125 111-262 26-153 (205)
90 PRK11727 23S rRNA mA1618 methy 99.3 7.7E-12 1.7E-16 115.8 11.1 75 146-220 114-201 (321)
91 PRK13942 protein-L-isoaspartat 99.3 2.4E-11 5.1E-16 107.0 13.4 100 147-265 77-177 (212)
92 PRK10901 16S rRNA methyltransf 99.3 1.3E-11 2.9E-16 119.7 12.9 135 146-281 244-392 (427)
93 smart00828 PKS_MT Methyltransf 99.3 1.8E-11 4E-16 108.5 12.4 125 149-287 2-142 (224)
94 PRK13944 protein-L-isoaspartat 99.3 1.8E-11 3.9E-16 107.2 11.7 100 147-265 73-174 (205)
95 TIGR00446 nop2p NOL1/NOP2/sun 99.3 1.7E-11 3.7E-16 111.6 11.7 118 147-266 72-201 (264)
96 PLN02476 O-methyltransferase 99.3 8.1E-11 1.8E-15 106.7 14.5 105 147-262 119-226 (278)
97 COG4122 Predicted O-methyltran 99.3 8E-11 1.7E-15 102.8 13.9 117 116-262 45-164 (219)
98 PRK06922 hypothetical protein; 99.3 2.3E-11 5.1E-16 120.6 11.6 113 147-263 419-536 (677)
99 TIGR00452 methyltransferase, p 99.3 3.7E-11 8.1E-16 111.3 12.2 128 146-288 121-272 (314)
100 TIGR02716 C20_methyl_CrtF C-20 99.3 1.1E-10 2.4E-15 108.6 15.1 103 147-263 150-253 (306)
101 PRK04457 spermidine synthase; 99.3 9.3E-11 2E-15 106.5 14.2 109 147-263 67-176 (262)
102 PRK12335 tellurite resistance 99.3 3.5E-11 7.6E-16 110.9 11.4 101 147-262 121-221 (287)
103 TIGR02072 BioC biotin biosynth 99.3 5.4E-11 1.2E-15 106.0 11.8 101 147-264 35-135 (240)
104 TIGR02085 meth_trns_rumB 23S r 99.3 8.2E-11 1.8E-15 112.3 13.7 121 147-287 234-354 (374)
105 PRK14903 16S rRNA methyltransf 99.3 4.2E-11 9.1E-16 116.2 11.7 135 147-281 238-386 (431)
106 PRK11088 rrmA 23S rRNA methylt 99.3 3.3E-11 7.2E-16 110.2 10.4 104 147-275 86-192 (272)
107 PRK14901 16S rRNA methyltransf 99.3 5.7E-11 1.2E-15 115.6 12.6 135 146-281 252-404 (434)
108 PRK10258 biotin biosynthesis p 99.2 5.9E-11 1.3E-15 107.2 11.8 98 147-264 43-140 (251)
109 PRK08317 hypothetical protein; 99.2 4.3E-10 9.4E-15 100.1 16.5 103 147-263 20-123 (241)
110 PRK14904 16S rRNA methyltransf 99.2 7.4E-11 1.6E-15 115.2 12.3 129 147-281 251-397 (445)
111 PRK00811 spermidine synthase; 99.2 1.9E-10 4.1E-15 105.7 14.2 112 146-265 76-192 (283)
112 PRK15068 tRNA mo(5)U34 methylt 99.2 1.7E-10 3.8E-15 107.7 14.0 128 146-288 122-273 (322)
113 PTZ00146 fibrillarin; Provisio 99.2 1.9E-10 4.1E-15 104.6 13.8 129 146-288 132-270 (293)
114 PRK15128 23S rRNA m(5)C1962 me 99.2 4.8E-10 1E-14 107.3 17.2 133 147-283 221-363 (396)
115 PRK01581 speE spermidine synth 99.2 3.4E-10 7.3E-15 105.6 15.1 133 146-285 150-293 (374)
116 COG2263 Predicted RNA methylas 99.2 1.5E-10 3.4E-15 97.3 11.2 119 146-287 45-166 (198)
117 KOG1270 Methyltransferases [Co 99.2 7.3E-12 1.6E-16 110.1 3.1 104 147-268 90-199 (282)
118 PF03848 TehB: Tellurite resis 99.2 2.7E-10 5.8E-15 97.9 12.5 103 147-264 31-133 (192)
119 TIGR00563 rsmB ribosomal RNA s 99.2 1.5E-10 3.2E-15 112.5 12.1 135 147-281 239-388 (426)
120 TIGR03438 probable methyltrans 99.2 2.5E-10 5.5E-15 105.9 13.0 112 147-265 64-178 (301)
121 PRK00216 ubiE ubiquinone/menaq 99.2 3.3E-10 7.2E-15 101.0 13.3 103 147-262 52-156 (239)
122 PLN02589 caffeoyl-CoA O-methyl 99.2 6.1E-10 1.3E-14 99.7 14.6 124 112-262 61-188 (247)
123 PRK00312 pcm protein-L-isoaspa 99.2 3.5E-10 7.5E-15 99.6 12.9 98 147-265 79-176 (212)
124 PRK03522 rumB 23S rRNA methylu 99.2 4.5E-10 9.7E-15 104.9 14.3 122 147-288 174-295 (315)
125 TIGR00479 rumA 23S rRNA (uraci 99.2 1E-09 2.3E-14 106.8 17.0 126 147-287 293-418 (431)
126 PLN03075 nicotianamine synthas 99.2 3.1E-10 6.7E-15 103.6 12.3 107 147-265 124-234 (296)
127 TIGR03840 TMPT_Se_Te thiopurin 99.2 9.5E-11 2.1E-15 103.1 8.5 103 147-264 35-152 (213)
128 TIGR00438 rrmJ cell division p 99.2 3.3E-10 7.2E-15 97.9 11.8 132 147-290 33-171 (188)
129 PRK13943 protein-L-isoaspartat 99.2 4E-10 8.8E-15 104.8 12.8 100 147-265 81-181 (322)
130 PRK05031 tRNA (uracil-5-)-meth 99.1 1.7E-09 3.6E-14 102.8 16.8 123 148-287 208-341 (362)
131 PRK11188 rrmJ 23S rRNA methylt 99.1 6E-10 1.3E-14 97.9 12.4 131 147-290 52-190 (209)
132 TIGR01934 MenG_MenH_UbiE ubiqu 99.1 1E-09 2.3E-14 96.7 13.9 102 147-263 40-142 (223)
133 COG2518 Pcm Protein-L-isoaspar 99.1 9.4E-10 2E-14 94.9 13.0 98 147-265 73-170 (209)
134 PRK03612 spermidine synthase; 99.1 9.3E-10 2E-14 109.3 14.5 130 146-282 297-437 (521)
135 TIGR02021 BchM-ChlM magnesium 99.1 1.2E-09 2.6E-14 96.6 13.1 150 147-329 56-206 (219)
136 PF05401 NodS: Nodulation prot 99.1 6.2E-10 1.3E-14 94.8 10.7 119 147-280 44-171 (201)
137 smart00650 rADc Ribosomal RNA 99.1 3.7E-10 8E-15 95.9 8.9 68 147-218 14-87 (169)
138 PRK11705 cyclopropane fatty ac 99.1 6.3E-10 1.4E-14 106.3 11.1 100 147-264 168-267 (383)
139 PF01135 PCMT: Protein-L-isoas 99.1 7.5E-10 1.6E-14 96.9 10.6 101 146-265 72-173 (209)
140 KOG1541 Predicted protein carb 99.1 7.5E-10 1.6E-14 95.0 10.2 124 147-283 51-181 (270)
141 PLN02366 spermidine synthase 99.1 3.3E-09 7.2E-14 98.2 15.3 113 146-265 91-207 (308)
142 TIGR00095 RNA methyltransferas 99.1 8.1E-09 1.8E-13 89.2 16.8 109 147-266 50-161 (189)
143 TIGR02143 trmA_only tRNA (urac 99.1 2.8E-09 6.1E-14 100.9 15.2 123 148-287 199-332 (353)
144 TIGR01983 UbiG ubiquinone bios 99.1 3.6E-09 7.8E-14 93.7 14.8 105 147-265 46-150 (224)
145 smart00138 MeTrc Methyltransfe 99.1 2.8E-10 6.1E-15 103.5 7.8 107 147-264 100-242 (264)
146 cd02440 AdoMet_MTases S-adenos 99.1 2E-09 4.3E-14 81.8 11.3 103 149-263 1-103 (107)
147 PLN02585 magnesium protoporphy 99.1 6.7E-09 1.4E-13 96.5 16.8 85 111-207 119-208 (315)
148 PRK05785 hypothetical protein; 99.1 1.7E-09 3.6E-14 96.2 12.0 89 147-257 52-140 (226)
149 KOG4300 Predicted methyltransf 99.1 7.6E-10 1.7E-14 94.0 9.1 102 146-262 76-180 (252)
150 TIGR00417 speE spermidine synt 99.1 3.8E-09 8.2E-14 96.5 14.4 111 147-265 73-187 (270)
151 PRK13255 thiopurine S-methyltr 99.0 5.1E-10 1.1E-14 98.8 7.3 100 147-262 38-153 (218)
152 PLN02336 phosphoethanolamine N 99.0 2.3E-09 4.9E-14 105.8 11.4 103 147-262 38-140 (475)
153 TIGR03587 Pse_Me-ase pseudamin 99.0 2.6E-09 5.7E-14 93.4 10.2 97 147-262 44-140 (204)
154 PRK05134 bifunctional 3-demeth 99.0 1.1E-08 2.3E-13 91.4 14.3 104 147-265 49-152 (233)
155 PF01170 UPF0020: Putative RNA 99.0 5.5E-09 1.2E-13 89.5 11.6 128 147-284 29-166 (179)
156 PRK07580 Mg-protoporphyrin IX 99.0 1.4E-08 3E-13 90.3 14.3 150 147-329 64-214 (230)
157 PF13489 Methyltransf_23: Meth 99.0 3E-09 6.5E-14 88.7 9.0 138 146-325 22-159 (161)
158 KOG2915 tRNA(1-methyladenosine 99.0 2.7E-08 5.9E-13 88.0 15.0 186 82-292 46-238 (314)
159 KOG2187 tRNA uracil-5-methyltr 99.0 5.3E-09 1.2E-13 100.1 11.4 121 147-278 384-504 (534)
160 PRK06202 hypothetical protein; 98.9 8.2E-09 1.8E-13 92.1 11.1 100 147-262 61-164 (232)
161 PF07021 MetW: Methionine bios 98.9 4.9E-08 1.1E-12 83.1 15.0 153 147-330 14-168 (193)
162 PRK00274 ksgA 16S ribosomal RN 98.9 1.5E-09 3.1E-14 99.3 6.0 69 147-220 43-117 (272)
163 PTZ00338 dimethyladenosine tra 98.9 2.5E-09 5.5E-14 98.5 7.5 73 147-221 37-114 (294)
164 KOG2899 Predicted methyltransf 98.9 4.7E-09 1E-13 91.4 8.5 45 147-191 59-103 (288)
165 PRK14896 ksgA 16S ribosomal RN 98.9 3.8E-09 8.2E-14 95.9 7.4 70 147-220 30-103 (258)
166 PF03602 Cons_hypoth95: Conser 98.9 3.4E-08 7.4E-13 84.8 12.1 111 147-267 43-156 (183)
167 PRK04338 N(2),N(2)-dimethylgua 98.8 2.8E-08 6.1E-13 94.8 12.2 99 148-263 59-157 (382)
168 PF02475 Met_10: Met-10+ like- 98.8 1.5E-08 3.2E-13 88.0 9.2 98 147-262 102-200 (200)
169 COG2265 TrmA SAM-dependent met 98.8 5.6E-08 1.2E-12 93.9 14.0 122 147-284 294-415 (432)
170 PLN02823 spermine synthase 98.8 1.1E-07 2.4E-12 89.0 14.6 112 147-264 104-220 (336)
171 KOG2361 Predicted methyltransf 98.8 1E-08 2.2E-13 89.4 6.6 107 149-263 74-182 (264)
172 PF05958 tRNA_U5-meth_tr: tRNA 98.8 8.1E-08 1.8E-12 90.9 12.3 122 149-287 199-331 (352)
173 KOG3010 Methyltransferase [Gen 98.7 8.4E-09 1.8E-13 89.9 4.1 95 149-262 36-135 (261)
174 COG1092 Predicted SAM-dependen 98.7 1.3E-07 2.9E-12 89.7 12.6 116 147-266 218-338 (393)
175 PRK11933 yebU rRNA (cytosine-C 98.7 2.4E-07 5.2E-12 90.5 14.7 132 146-281 113-262 (470)
176 PRK11783 rlmL 23S rRNA m(2)G24 98.7 7.7E-08 1.7E-12 99.0 11.8 112 147-270 191-353 (702)
177 PF08003 Methyltransf_9: Prote 98.7 1.2E-07 2.7E-12 86.0 11.4 130 146-290 115-268 (315)
178 KOG1663 O-methyltransferase [S 98.7 4.7E-07 1E-11 78.7 14.2 126 110-262 53-181 (237)
179 COG2521 Predicted archaeal met 98.7 5.2E-08 1.1E-12 84.5 8.2 134 146-288 134-276 (287)
180 PF10672 Methyltrans_SAM: S-ad 98.7 5.1E-07 1.1E-11 82.5 15.0 114 147-265 124-239 (286)
181 PF02527 GidB: rRNA small subu 98.7 4.6E-07 1E-11 77.7 13.5 100 149-266 51-150 (184)
182 TIGR02081 metW methionine bios 98.7 4.7E-07 1E-11 78.5 13.7 153 147-330 14-168 (194)
183 COG0742 N6-adenine-specific me 98.7 1.7E-06 3.7E-11 73.6 16.3 109 146-267 43-157 (187)
184 PF12147 Methyltransf_20: Puta 98.7 4.2E-07 9.1E-12 81.8 13.0 121 147-280 136-266 (311)
185 COG4976 Predicted methyltransf 98.7 1.2E-08 2.6E-13 88.1 2.9 123 148-288 127-264 (287)
186 PRK13256 thiopurine S-methyltr 98.6 7.5E-08 1.6E-12 85.0 7.6 105 147-264 44-163 (226)
187 TIGR00755 ksgA dimethyladenosi 98.6 6.3E-08 1.4E-12 87.6 7.3 68 147-218 30-104 (253)
188 PF03291 Pox_MCEL: mRNA cappin 98.6 2E-07 4.3E-12 87.2 10.3 126 146-279 62-198 (331)
189 PF10294 Methyltransf_16: Puta 98.6 2.1E-07 4.6E-12 79.2 9.6 108 146-264 45-156 (173)
190 COG1041 Predicted DNA modifica 98.6 4E-07 8.7E-12 84.2 11.5 126 147-289 198-330 (347)
191 KOG1499 Protein arginine N-met 98.6 1.9E-07 4E-12 86.0 8.7 100 147-262 61-165 (346)
192 PF02384 N6_Mtase: N-6 DNA Met 98.6 3.3E-08 7.2E-13 92.1 3.7 136 147-282 47-206 (311)
193 TIGR00308 TRM1 tRNA(guanine-26 98.6 6.5E-07 1.4E-11 85.1 12.3 100 148-263 46-146 (374)
194 PF00891 Methyltransf_2: O-met 98.6 3.9E-07 8.4E-12 81.8 10.3 95 147-262 101-197 (241)
195 PF01564 Spermine_synth: Sperm 98.5 1.4E-06 3E-11 78.4 12.9 127 146-280 76-211 (246)
196 TIGR02987 met_A_Alw26 type II 98.5 1.6E-07 3.4E-12 93.8 7.2 73 147-219 32-123 (524)
197 KOG3420 Predicted RNA methylas 98.5 4.4E-08 9.6E-13 78.8 2.5 75 145-226 47-121 (185)
198 PF06080 DUF938: Protein of un 98.5 4.5E-07 9.8E-12 78.2 8.5 105 149-262 28-139 (204)
199 KOG0820 Ribosomal RNA adenine 98.5 3E-07 6.5E-12 81.6 7.1 117 147-267 59-180 (315)
200 COG2520 Predicted methyltransf 98.5 2.4E-06 5.3E-11 79.5 13.0 100 147-264 189-289 (341)
201 COG0421 SpeE Spermidine syntha 98.5 2.4E-06 5.2E-11 78.0 12.6 112 147-266 77-192 (282)
202 PF05724 TPMT: Thiopurine S-me 98.4 1.9E-07 4E-12 82.4 4.6 101 147-262 38-153 (218)
203 PF04816 DUF633: Family of unk 98.4 3.8E-06 8.2E-11 73.3 12.6 118 150-285 1-120 (205)
204 PF09445 Methyltransf_15: RNA 98.4 7E-07 1.5E-11 74.7 7.5 58 149-208 2-60 (163)
205 PF05185 PRMT5: PRMT5 arginine 98.4 8.3E-07 1.8E-11 86.4 8.2 103 147-261 187-294 (448)
206 TIGR01444 fkbM_fam methyltrans 98.4 1.2E-06 2.5E-11 71.9 7.5 59 149-207 1-59 (143)
207 COG0144 Sun tRNA and rRNA cyto 98.4 2.3E-06 5.1E-11 81.0 10.4 136 146-281 156-308 (355)
208 COG0030 KsgA Dimethyladenosine 98.3 7.9E-07 1.7E-11 79.7 6.0 71 147-221 31-108 (259)
209 KOG1975 mRNA cap methyltransfe 98.3 3.6E-06 7.7E-11 76.5 9.7 126 147-280 118-250 (389)
210 PLN02232 ubiquinone biosynthes 98.3 2E-06 4.4E-11 72.3 7.6 77 174-263 1-80 (160)
211 TIGR00478 tly hemolysin TlyA f 98.3 1.6E-06 3.6E-11 76.8 6.4 143 147-334 76-222 (228)
212 PRK04148 hypothetical protein; 98.3 5.2E-06 1.1E-10 67.0 8.6 52 147-207 17-69 (134)
213 KOG1500 Protein arginine N-met 98.2 6.1E-06 1.3E-10 75.3 8.4 99 147-262 178-280 (517)
214 COG0116 Predicted N6-adenine-s 98.2 4.2E-05 9.1E-10 71.9 14.1 107 148-265 193-345 (381)
215 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.2 3.3E-05 7.1E-10 71.0 13.2 131 147-280 86-238 (283)
216 COG0357 GidB Predicted S-adeno 98.2 1.8E-05 3.9E-10 69.2 10.8 124 147-287 68-193 (215)
217 KOG1661 Protein-L-isoaspartate 98.2 1.3E-05 2.9E-10 68.7 9.4 100 147-265 83-194 (237)
218 PF05971 Methyltransf_10: Prot 98.2 1.9E-06 4.1E-11 78.9 4.6 72 147-218 103-187 (299)
219 PRK00050 16S rRNA m(4)C1402 me 98.2 1E-05 2.2E-10 74.3 9.3 60 147-208 20-80 (296)
220 PF05219 DREV: DREV methyltran 98.1 9.9E-05 2.1E-09 65.8 14.5 121 147-292 95-243 (265)
221 COG3963 Phospholipid N-methylt 98.1 8.8E-05 1.9E-09 61.5 12.9 106 147-264 49-156 (194)
222 TIGR03439 methyl_EasF probable 98.1 3.9E-05 8.4E-10 71.4 11.9 113 147-265 77-198 (319)
223 PF01739 CheR: CheR methyltran 97.9 2.8E-05 6.1E-10 67.4 6.7 106 147-263 32-174 (196)
224 PF05148 Methyltransf_8: Hypot 97.9 3.4E-05 7.3E-10 66.6 6.7 109 146-286 72-182 (219)
225 PRK10611 chemotaxis methyltran 97.8 3.8E-05 8.1E-10 70.5 6.4 107 147-264 116-262 (287)
226 PF13578 Methyltransf_24: Meth 97.8 3.3E-05 7.2E-10 59.9 5.3 99 151-262 1-103 (106)
227 PF13679 Methyltransf_32: Meth 97.8 4.8E-05 1E-09 62.5 6.5 60 147-206 26-92 (141)
228 KOG2730 Methylase [General fun 97.8 4.8E-05 1E-09 65.8 6.6 61 147-209 95-156 (263)
229 PF00398 RrnaAD: Ribosomal RNA 97.8 3.4E-05 7.4E-10 70.2 6.1 57 147-207 31-87 (262)
230 PF08123 DOT1: Histone methyla 97.8 9.8E-05 2.1E-09 64.5 8.2 103 147-262 43-156 (205)
231 PF01269 Fibrillarin: Fibrilla 97.8 0.00076 1.6E-08 58.9 13.2 126 146-287 73-210 (229)
232 KOG3045 Predicted RNA methylas 97.7 0.00012 2.6E-09 64.9 7.5 126 124-285 158-287 (325)
233 COG1352 CheR Methylase of chem 97.7 5.5E-05 1.2E-09 68.6 5.4 42 147-188 97-147 (268)
234 COG4076 Predicted RNA methylas 97.7 6.2E-05 1.3E-09 63.5 5.2 60 147-208 33-92 (252)
235 PF01728 FtsJ: FtsJ-like methy 97.7 9.6E-05 2.1E-09 63.2 6.6 107 146-264 23-139 (181)
236 PF05891 Methyltransf_PK: AdoM 97.6 0.00017 3.6E-09 62.9 7.0 104 147-263 56-160 (218)
237 PRK00536 speE spermidine synth 97.5 0.0011 2.4E-08 60.0 11.4 117 145-285 71-195 (262)
238 COG4262 Predicted spermidine s 97.5 0.0016 3.4E-08 60.6 12.3 130 147-284 290-431 (508)
239 PF01861 DUF43: Protein of unk 97.5 0.00064 1.4E-08 60.1 9.3 122 147-290 45-179 (243)
240 KOG3178 Hydroxyindole-O-methyl 97.5 0.00089 1.9E-08 62.1 10.6 154 147-330 178-331 (342)
241 COG0500 SmtA SAM-dependent met 97.5 0.0017 3.6E-08 52.1 11.2 102 150-265 52-156 (257)
242 KOG1709 Guanidinoacetate methy 97.5 0.00073 1.6E-08 58.4 8.9 105 146-263 101-205 (271)
243 COG1889 NOP1 Fibrillarin-like 97.5 0.0042 9E-08 53.3 13.2 127 146-288 76-213 (231)
244 COG0286 HsdM Type I restrictio 97.4 0.00032 7E-09 69.3 7.1 117 147-263 187-325 (489)
245 KOG1122 tRNA and rRNA cytosine 97.4 0.0012 2.6E-08 62.4 10.2 117 146-265 241-372 (460)
246 COG2384 Predicted SAM-dependen 97.4 0.0021 4.6E-08 55.9 10.9 121 148-285 18-139 (226)
247 COG0275 Predicted S-adenosylme 97.3 0.0085 1.8E-07 54.7 14.4 60 147-207 24-84 (314)
248 COG0293 FtsJ 23S rRNA methylas 97.3 0.0024 5.1E-08 55.4 10.4 108 146-264 45-159 (205)
249 COG1867 TRM1 N2,N2-dimethylgua 97.3 0.0022 4.7E-08 59.9 10.5 99 147-262 53-152 (380)
250 PRK10742 putative methyltransf 97.3 0.0021 4.6E-08 57.3 10.0 79 147-231 89-176 (250)
251 PF02005 TRM: N2,N2-dimethylgu 97.3 0.0014 3.1E-08 62.5 9.5 104 147-266 50-157 (377)
252 TIGR00006 S-adenosyl-methyltra 97.2 0.0029 6.2E-08 58.5 10.3 61 147-208 21-81 (305)
253 COG3897 Predicted methyltransf 97.2 0.00083 1.8E-08 57.3 6.0 57 147-205 80-136 (218)
254 PF03141 Methyltransf_29: Puta 97.1 0.00052 1.1E-08 66.5 4.4 119 148-286 119-250 (506)
255 PF06962 rRNA_methylase: Putat 97.1 0.013 2.7E-07 47.8 11.7 108 172-282 1-115 (140)
256 PF04672 Methyltransf_19: S-ad 97.0 0.0015 3.2E-08 58.9 6.4 128 148-281 70-211 (267)
257 KOG2940 Predicted methyltransf 97.0 0.0017 3.6E-08 56.8 6.3 100 147-262 73-172 (325)
258 COG1189 Predicted rRNA methyla 96.8 0.011 2.4E-07 52.1 9.9 150 146-335 79-230 (245)
259 KOG3987 Uncharacterized conser 96.8 0.0019 4.2E-08 55.5 4.8 41 146-188 112-152 (288)
260 KOG3201 Uncharacterized conser 96.8 0.0011 2.4E-08 54.8 3.0 127 147-284 30-161 (201)
261 PF03059 NAS: Nicotianamine sy 96.7 0.013 2.8E-07 53.4 9.7 106 148-265 122-231 (276)
262 KOG4058 Uncharacterized conser 96.7 0.011 2.5E-07 48.1 8.1 91 115-224 54-145 (199)
263 COG3129 Predicted SAM-dependen 96.5 0.0049 1.1E-07 53.9 5.2 55 146-200 78-134 (292)
264 PF01795 Methyltransf_5: MraW 96.5 0.008 1.7E-07 55.6 6.8 77 147-224 21-98 (310)
265 PRK11760 putative 23S rRNA C24 96.3 0.036 7.8E-07 51.8 10.2 86 146-257 211-296 (357)
266 PF11599 AviRa: RRNA methyltra 96.2 0.0078 1.7E-07 52.2 4.7 44 147-190 52-97 (246)
267 KOG2912 Predicted DNA methylas 96.2 0.007 1.5E-07 55.3 4.6 69 150-218 106-188 (419)
268 PF04989 CmcI: Cephalosporin h 96.2 0.0084 1.8E-07 52.1 4.9 121 115-263 17-146 (206)
269 PF09243 Rsm22: Mitochondrial 96.2 0.043 9.3E-07 50.2 9.9 127 147-285 34-164 (274)
270 PRK01747 mnmC bifunctional tRN 96.1 0.066 1.4E-06 55.3 12.3 126 147-285 58-223 (662)
271 KOG4589 Cell division protein 96.1 0.079 1.7E-06 45.1 10.2 107 147-264 70-184 (232)
272 PF07091 FmrO: Ribosomal RNA m 96.0 0.03 6.5E-07 50.0 7.7 59 147-206 106-164 (251)
273 KOG2671 Putative RNA methylase 95.9 0.004 8.8E-08 57.5 2.0 116 146-263 208-353 (421)
274 PF07757 AdoMet_MTase: Predict 95.8 0.0069 1.5E-07 46.7 2.6 41 138-180 50-90 (112)
275 KOG1269 SAM-dependent methyltr 95.7 0.017 3.7E-07 54.8 5.2 97 147-262 111-213 (364)
276 COG1568 Predicted methyltransf 95.7 0.056 1.2E-06 48.7 7.9 120 147-287 153-286 (354)
277 PF10354 DUF2431: Domain of un 95.6 0.057 1.2E-06 45.6 7.7 134 153-287 3-150 (166)
278 PF07942 N2227: N2227-like pro 95.6 0.34 7.3E-06 44.1 13.1 40 146-187 56-95 (270)
279 KOG1331 Predicted methyltransf 95.4 0.0083 1.8E-07 54.2 2.0 95 147-262 46-141 (293)
280 PF01234 NNMT_PNMT_TEMT: NNMT/ 95.4 0.048 1.1E-06 49.2 6.8 135 147-287 57-237 (256)
281 KOG1562 Spermidine synthase [A 95.3 0.16 3.5E-06 46.3 9.8 120 145-271 120-243 (337)
282 PRK11524 putative methyltransf 95.2 0.071 1.5E-06 49.0 7.5 44 146-191 208-251 (284)
283 KOG1501 Arginine N-methyltrans 95.1 0.041 9E-07 52.5 5.5 54 147-201 67-121 (636)
284 PF01555 N6_N4_Mtase: DNA meth 95.1 0.066 1.4E-06 46.8 6.7 58 115-188 174-231 (231)
285 KOG1596 Fibrillarin and relate 95.0 0.16 3.4E-06 45.0 8.6 101 147-263 157-260 (317)
286 COG4798 Predicted methyltransf 95.0 0.22 4.8E-06 42.7 9.2 138 135-284 40-200 (238)
287 KOG2352 Predicted spermine/spe 94.6 0.14 3.1E-06 49.8 8.0 130 147-277 296-431 (482)
288 PRK13699 putative methylase; P 94.6 0.16 3.5E-06 45.1 7.8 46 146-193 163-208 (227)
289 KOG1253 tRNA methyltransferase 94.5 0.057 1.2E-06 52.4 5.1 101 147-262 110-214 (525)
290 PRK11524 putative methyltransf 94.4 0.1 2.2E-06 48.0 6.4 82 197-283 8-97 (284)
291 PHA01634 hypothetical protein 94.2 0.13 2.7E-06 41.1 5.4 49 146-195 28-76 (156)
292 cd00315 Cyt_C5_DNA_methylase C 94.0 0.56 1.2E-05 42.9 10.3 127 149-287 2-141 (275)
293 TIGR00497 hsdM type I restrict 93.9 0.16 3.5E-06 50.6 7.0 115 148-262 219-353 (501)
294 PF05711 TylF: Macrocin-O-meth 93.8 0.38 8.2E-06 43.3 8.6 125 147-285 75-234 (248)
295 KOG2793 Putative N2,N2-dimethy 93.5 0.92 2E-05 40.7 10.5 107 147-266 87-201 (248)
296 KOG2198 tRNA cytosine-5-methyl 93.4 0.57 1.2E-05 44.1 9.2 119 146-265 155-297 (375)
297 PLN02668 indole-3-acetate carb 93.3 0.38 8.2E-06 46.1 8.0 22 243-264 216-237 (386)
298 COG4301 Uncharacterized conser 93.1 1.4 3E-05 39.5 10.5 113 147-267 79-196 (321)
299 cd08283 FDH_like_1 Glutathione 93.1 0.67 1.5E-05 44.4 9.7 43 147-189 185-228 (386)
300 KOG2078 tRNA modification enzy 92.9 0.076 1.6E-06 50.6 2.8 61 147-209 250-312 (495)
301 COG1064 AdhP Zn-dependent alco 92.7 0.4 8.6E-06 45.0 7.2 87 147-262 167-257 (339)
302 PF00107 ADH_zinc_N: Zinc-bind 92.6 0.61 1.3E-05 36.9 7.4 88 156-264 1-89 (130)
303 PRK13699 putative methylase; P 92.4 0.74 1.6E-05 40.9 8.3 42 243-285 51-92 (227)
304 PF00145 DNA_methylase: C-5 cy 92.4 2.1 4.6E-05 39.5 11.9 127 149-288 2-141 (335)
305 PF02254 TrkA_N: TrkA-N domain 92.3 2.6 5.6E-05 32.6 10.5 106 155-283 4-111 (116)
306 PF07279 DUF1442: Protein of u 92.2 3.4 7.3E-05 36.2 11.7 61 147-207 42-107 (218)
307 PF11968 DUF3321: Putative met 91.7 0.33 7.2E-06 42.4 5.0 111 147-288 52-180 (219)
308 PF03141 Methyltransf_29: Puta 91.4 0.54 1.2E-05 46.0 6.7 119 148-285 367-487 (506)
309 KOG0024 Sorbitol dehydrogenase 90.7 0.96 2.1E-05 42.0 7.2 95 146-262 169-271 (354)
310 PF03492 Methyltransf_7: SAM d 90.5 1.8 4E-05 40.7 9.2 20 147-166 17-36 (334)
311 KOG2352 Predicted spermine/spe 89.9 0.83 1.8E-05 44.6 6.4 102 149-264 51-161 (482)
312 COG1063 Tdh Threonine dehydrog 89.0 2.7 5.9E-05 39.8 9.2 96 148-262 170-267 (350)
313 PF02636 Methyltransf_28: Puta 87.7 0.49 1.1E-05 42.6 3.1 45 148-192 20-72 (252)
314 KOG2798 Putative trehalase [Ca 87.5 6.5 0.00014 36.5 10.0 38 147-186 151-188 (369)
315 KOG0822 Protein kinase inhibit 87.0 2 4.2E-05 42.5 6.8 96 148-260 369-474 (649)
316 PF04445 SAM_MT: Putative SAM- 86.3 1.9 4.2E-05 38.3 6.0 74 147-226 76-158 (234)
317 KOG2651 rRNA adenine N-6-methy 86.0 1.3 2.7E-05 42.0 4.8 41 147-188 154-194 (476)
318 cd08254 hydroxyacyl_CoA_DH 6-h 85.8 7.8 0.00017 35.7 10.3 95 147-263 166-262 (338)
319 KOG1099 SAM-dependent methyltr 85.7 2.2 4.7E-05 37.8 5.8 101 148-263 43-162 (294)
320 PF05050 Methyltransf_21: Meth 85.5 2.4 5.2E-05 34.8 6.0 42 152-193 1-48 (167)
321 PF05430 Methyltransf_30: S-ad 85.1 3.3 7.2E-05 33.0 6.3 76 197-285 32-107 (124)
322 COG0270 Dcm Site-specific DNA 83.1 11 0.00024 35.3 9.9 126 147-283 3-141 (328)
323 PF07669 Eco57I: Eco57I restri 83.1 1.2 2.6E-05 34.5 2.8 65 209-280 3-72 (106)
324 PRK09424 pntA NAD(P) transhydr 82.4 15 0.00032 36.7 10.9 41 147-188 165-206 (509)
325 PF05206 TRM13: Methyltransfer 82.0 2.1 4.5E-05 38.8 4.4 60 147-207 19-84 (259)
326 PRK03659 glutathione-regulated 81.9 14 0.00029 37.9 10.8 95 155-268 406-502 (601)
327 COG0677 WecC UDP-N-acetyl-D-ma 81.6 9.4 0.0002 36.6 8.6 122 148-279 10-144 (436)
328 COG3510 CmcI Cephalosporin hyd 81.6 15 0.00032 31.7 9.0 117 116-264 55-180 (237)
329 COG1565 Uncharacterized conser 80.3 4.3 9.3E-05 38.4 5.9 47 147-193 78-132 (370)
330 PF04378 RsmJ: Ribosomal RNA s 79.3 21 0.00046 32.0 9.8 120 151-284 62-186 (245)
331 KOG1227 Putative methyltransfe 77.8 0.83 1.8E-05 41.9 0.4 73 147-226 195-269 (351)
332 COG4121 Uncharacterized conser 76.9 15 0.00033 33.1 8.1 130 147-286 59-226 (252)
333 PRK03562 glutathione-regulated 76.5 24 0.00053 36.2 10.7 52 148-208 401-454 (621)
334 PF01555 N6_N4_Mtase: DNA meth 76.3 0.57 1.2E-05 40.8 -1.1 42 243-284 35-78 (231)
335 cd05188 MDR Medium chain reduc 76.0 22 0.00048 31.2 9.2 95 147-263 135-231 (271)
336 PRK09880 L-idonate 5-dehydroge 75.7 17 0.00037 33.9 8.8 94 147-262 170-264 (343)
337 TIGR03201 dearomat_had 6-hydro 75.2 27 0.00059 32.6 10.0 41 147-188 167-208 (349)
338 COG5459 Predicted rRNA methyla 75.1 8.5 0.00019 36.3 6.2 39 147-185 114-153 (484)
339 KOG0023 Alcohol dehydrogenase, 74.8 16 0.00034 34.2 7.7 93 147-262 182-277 (360)
340 KOG2920 Predicted methyltransf 74.7 2.3 5.1E-05 38.7 2.4 37 147-184 117-153 (282)
341 PRK10669 putative cation:proto 73.9 37 0.00081 34.3 11.2 105 155-284 423-531 (558)
342 PRK07102 short chain dehydroge 72.2 15 0.00033 32.2 7.1 58 149-207 3-62 (243)
343 TIGR03451 mycoS_dep_FDH mycoth 71.1 40 0.00087 31.6 10.1 95 147-262 177-274 (358)
344 cd08281 liver_ADH_like1 Zinc-d 70.6 44 0.00096 31.5 10.4 94 147-262 192-288 (371)
345 PTZ00357 methyltransferase; Pr 70.1 9.8 0.00021 39.1 5.7 102 148-259 702-830 (1072)
346 TIGR02822 adh_fam_2 zinc-bindi 69.4 45 0.00098 31.0 10.0 41 147-188 166-207 (329)
347 cd08230 glucose_DH Glucose deh 68.8 33 0.00073 32.1 9.1 40 147-187 173-216 (355)
348 cd05278 FDH_like Formaldehyde 68.7 45 0.00098 30.8 9.9 96 147-262 168-265 (347)
349 COG2961 ComJ Protein involved 68.2 93 0.002 28.1 11.0 118 151-282 93-215 (279)
350 PLN03154 putative allyl alcoho 67.8 73 0.0016 29.8 11.1 94 147-262 159-256 (348)
351 PRK09496 trkA potassium transp 67.4 58 0.0013 31.6 10.7 53 148-207 232-286 (453)
352 PF06859 Bin3: Bicoid-interact 67.4 1.7 3.7E-05 33.8 -0.1 21 244-264 24-44 (110)
353 PF10237 N6-adenineMlase: Prob 66.3 12 0.00027 31.3 4.9 125 116-277 9-135 (162)
354 TIGR03366 HpnZ_proposed putati 65.9 63 0.0014 29.1 10.0 95 147-263 121-217 (280)
355 PRK07326 short chain dehydroge 65.3 24 0.00052 30.6 6.9 58 147-207 6-65 (237)
356 KOG1209 1-Acyl dihydroxyaceton 65.2 35 0.00076 30.1 7.4 73 147-225 7-87 (289)
357 PRK08945 putative oxoacyl-(acy 64.2 28 0.00061 30.5 7.2 58 147-205 12-71 (247)
358 PRK07904 short chain dehydroge 64.2 32 0.00068 30.6 7.5 60 147-207 8-71 (253)
359 TIGR01202 bchC 2-desacetyl-2-h 64.1 30 0.00066 31.8 7.6 41 147-187 145-186 (308)
360 KOG2360 Proliferation-associat 63.9 9.6 0.00021 36.3 4.1 62 146-207 213-275 (413)
361 PF11899 DUF3419: Protein of u 63.9 11 0.00024 36.2 4.6 44 147-192 36-79 (380)
362 PF03269 DUF268: Caenorhabditi 63.9 23 0.0005 29.7 5.8 21 244-264 91-111 (177)
363 KOG1201 Hydroxysteroid 17-beta 63.8 22 0.00049 32.7 6.3 58 146-207 37-97 (300)
364 PRK15001 SAM-dependent 23S rib 63.2 64 0.0014 31.0 9.7 93 149-263 47-141 (378)
365 PRK08703 short chain dehydroge 63.0 27 0.00058 30.5 6.8 58 147-205 6-65 (239)
366 PRK10309 galactitol-1-phosphat 62.8 84 0.0018 29.2 10.5 97 147-263 161-259 (347)
367 KOG1098 Putative SAM-dependent 62.6 7.5 0.00016 39.3 3.3 35 147-181 45-80 (780)
368 cd08261 Zn_ADH7 Alcohol dehydr 62.1 63 0.0014 29.8 9.4 95 147-262 160-256 (337)
369 PRK10834 vancomycin high tempe 61.4 18 0.00038 32.4 5.2 37 4-40 42-90 (239)
370 PLN02740 Alcohol dehydrogenase 60.9 81 0.0018 29.9 10.1 42 147-188 199-241 (381)
371 PLN02827 Alcohol dehydrogenase 60.8 91 0.002 29.6 10.4 41 147-187 194-235 (378)
372 PRK06124 gluconate 5-dehydroge 60.7 37 0.00081 29.9 7.3 59 147-207 11-71 (256)
373 cd08239 THR_DH_like L-threonin 59.6 91 0.002 28.8 10.1 40 147-187 164-205 (339)
374 PRK15057 UDP-glucose 6-dehydro 59.6 1.4E+02 0.0031 28.7 11.5 33 156-188 7-40 (388)
375 COG1062 AdhC Zn-dependent alco 59.5 43 0.00093 31.6 7.4 92 147-262 186-283 (366)
376 PF13561 adh_short_C2: Enoyl-( 58.8 49 0.0011 28.9 7.7 109 154-264 1-133 (241)
377 TIGR02825 B4_12hDH leukotriene 58.8 1.5E+02 0.0032 27.2 11.4 93 147-262 139-235 (325)
378 PRK07454 short chain dehydroge 58.7 44 0.00096 29.0 7.4 58 148-207 7-66 (241)
379 PRK09496 trkA potassium transp 58.6 1E+02 0.0022 30.0 10.5 47 155-207 6-54 (453)
380 PF11899 DUF3419: Protein of u 58.5 39 0.00085 32.4 7.4 65 192-265 271-335 (380)
381 KOG2782 Putative SAM dependent 58.5 13 0.00029 32.7 3.7 45 147-191 44-88 (303)
382 PF03721 UDPG_MGDP_dh_N: UDP-g 58.1 72 0.0016 27.1 8.3 116 156-281 7-139 (185)
383 PRK00299 sulfur transfer prote 57.7 29 0.00064 25.2 5.0 59 216-287 8-66 (81)
384 TIGR00675 dcm DNA-methyltransf 57.7 19 0.00041 33.5 5.0 122 150-286 1-137 (315)
385 PRK08339 short chain dehydroge 57.3 51 0.0011 29.4 7.7 60 147-207 8-69 (263)
386 cd08234 threonine_DH_like L-th 56.8 93 0.002 28.5 9.6 94 147-262 160-255 (334)
387 PF03686 UPF0146: Uncharacteri 56.8 73 0.0016 25.5 7.4 68 147-231 14-82 (127)
388 PF03446 NAD_binding_2: NAD bi 56.8 1.1E+02 0.0023 25.2 9.0 103 153-283 7-114 (163)
389 PRK07666 fabG 3-ketoacyl-(acyl 56.4 57 0.0012 28.3 7.7 59 147-207 7-67 (239)
390 KOG0821 Predicted ribosomal RN 56.0 19 0.00041 31.8 4.2 59 147-207 51-109 (326)
391 COG0863 DNA modification methy 55.5 53 0.0012 29.8 7.6 46 146-193 222-267 (302)
392 KOG2811 Uncharacterized conser 55.1 24 0.00052 33.5 5.1 59 148-207 184-245 (420)
393 PRK06172 short chain dehydroge 54.9 52 0.0011 28.8 7.3 59 147-207 7-67 (253)
394 PRK08213 gluconate 5-dehydroge 54.8 52 0.0011 29.0 7.3 59 147-207 12-72 (259)
395 PRK06949 short chain dehydroge 54.7 77 0.0017 27.8 8.3 59 147-207 9-69 (258)
396 TIGR00027 mthyl_TIGR00027 meth 54.5 1.4E+02 0.0031 26.9 10.1 109 148-264 83-197 (260)
397 cd08294 leukotriene_B4_DH_like 54.4 1.7E+02 0.0037 26.6 11.0 93 147-262 144-239 (329)
398 PF12692 Methyltransf_17: S-ad 53.5 21 0.00045 29.5 3.8 103 147-261 29-131 (160)
399 PRK07523 gluconate 5-dehydroge 53.5 54 0.0012 28.8 7.2 59 147-207 10-70 (255)
400 PF02153 PDH: Prephenate dehyd 53.3 23 0.00049 31.9 4.6 79 160-264 1-79 (258)
401 cd08285 NADP_ADH NADP(H)-depen 52.8 1.5E+02 0.0033 27.4 10.4 96 147-262 167-264 (351)
402 PRK11064 wecC UDP-N-acetyl-D-m 52.8 1.6E+02 0.0035 28.6 10.7 122 149-280 5-136 (415)
403 PRK07677 short chain dehydroge 52.7 59 0.0013 28.5 7.3 56 149-206 3-60 (252)
404 PRK07576 short chain dehydroge 52.5 69 0.0015 28.5 7.7 58 147-206 9-68 (264)
405 PRK06125 short chain dehydroge 52.2 68 0.0015 28.3 7.6 60 147-207 7-68 (259)
406 PRK05786 fabG 3-ketoacyl-(acyl 51.6 63 0.0014 27.9 7.2 58 147-207 5-64 (238)
407 cd08295 double_bond_reductase_ 51.6 2E+02 0.0043 26.5 11.1 94 147-262 152-249 (338)
408 PRK12384 sorbitol-6-phosphate 51.6 71 0.0015 28.1 7.6 58 149-207 4-64 (259)
409 TIGR02818 adh_III_F_hyde S-(hy 51.5 1.5E+02 0.0033 27.8 10.3 42 147-188 186-228 (368)
410 cd08293 PTGR2 Prostaglandin re 51.4 1.7E+02 0.0037 26.9 10.5 93 148-262 156-252 (345)
411 PRK07814 short chain dehydroge 50.7 73 0.0016 28.2 7.6 59 147-207 10-70 (263)
412 cd06259 YdcF-like YdcF-like. Y 50.0 70 0.0015 25.7 6.7 69 9-77 2-94 (150)
413 PRK05867 short chain dehydroge 50.0 68 0.0015 28.1 7.2 59 147-207 9-69 (253)
414 PRK08217 fabG 3-ketoacyl-(acyl 49.1 82 0.0018 27.3 7.6 58 147-206 5-64 (253)
415 PRK07819 3-hydroxybutyryl-CoA 49.0 32 0.0007 31.5 5.0 41 149-191 7-49 (286)
416 cd08237 ribitol-5-phosphate_DH 49.0 37 0.0008 31.7 5.5 42 147-188 164-207 (341)
417 PRK08251 short chain dehydroge 48.6 86 0.0019 27.3 7.6 59 148-207 3-64 (248)
418 PRK06940 short chain dehydroge 47.5 53 0.0011 29.6 6.1 55 150-207 5-60 (275)
419 COG1255 Uncharacterized protei 47.5 47 0.001 26.2 4.8 48 147-207 14-62 (129)
420 PRK12826 3-ketoacyl-(acyl-carr 46.7 73 0.0016 27.6 6.9 59 147-207 6-66 (251)
421 PRK12429 3-hydroxybutyrate deh 46.6 53 0.0011 28.7 5.9 57 149-207 6-64 (258)
422 PRK11018 hypothetical protein; 46.0 60 0.0013 23.4 5.0 41 248-288 26-66 (78)
423 PRK15182 Vi polysaccharide bio 45.9 1.1E+02 0.0025 29.7 8.5 38 148-187 7-45 (425)
424 PRK09260 3-hydroxybutyryl-CoA 45.5 86 0.0019 28.5 7.3 39 150-190 4-44 (288)
425 cd08277 liver_alcohol_DH_like 44.8 2.3E+02 0.0049 26.6 10.3 41 147-187 185-226 (365)
426 cd08301 alcohol_DH_plants Plan 44.8 2.2E+02 0.0048 26.6 10.2 41 147-187 188-229 (369)
427 cd08300 alcohol_DH_class_III c 44.2 2.7E+02 0.0059 26.1 10.7 40 147-187 187-228 (368)
428 TIGR01500 sepiapter_red sepiap 44.1 87 0.0019 27.6 7.0 58 149-207 2-66 (256)
429 PRK07024 short chain dehydroge 43.9 41 0.00089 29.7 4.8 56 149-207 4-61 (257)
430 PRK10537 voltage-gated potassi 43.8 2E+02 0.0042 27.9 9.6 104 155-284 246-352 (393)
431 TIGR00006 S-adenosyl-methyltra 43.7 42 0.00091 31.2 4.8 37 243-280 219-256 (305)
432 cd05285 sorbitol_DH Sorbitol d 43.6 2.6E+02 0.0056 25.8 10.4 40 147-187 163-204 (343)
433 PLN02702 L-idonate 5-dehydroge 43.5 2.5E+02 0.0055 26.1 10.4 98 147-262 182-283 (364)
434 cd03420 SirA_RHOD_Pry_redox Si 43.4 84 0.0018 21.9 5.4 42 247-288 16-57 (69)
435 PRK06914 short chain dehydroge 43.3 1.1E+02 0.0024 27.3 7.6 59 148-207 4-65 (280)
436 PRK06113 7-alpha-hydroxysteroi 43.0 1E+02 0.0022 27.0 7.3 59 147-207 11-71 (255)
437 cd08278 benzyl_alcohol_DH Benz 42.9 2.7E+02 0.0059 26.0 10.5 41 147-187 187-228 (365)
438 TIGR03206 benzo_BadH 2-hydroxy 42.9 1.1E+02 0.0025 26.4 7.5 58 148-207 4-63 (250)
439 PF02719 Polysacc_synt_2: Poly 42.6 83 0.0018 29.1 6.5 59 156-214 6-74 (293)
440 PRK08340 glucose-1-dehydrogena 42.6 58 0.0013 28.8 5.6 56 149-207 2-59 (259)
441 COG4627 Uncharacterized protei 42.4 40 0.00087 28.2 3.9 21 244-264 66-86 (185)
442 cd08236 sugar_DH NAD(P)-depend 42.3 2.7E+02 0.0059 25.5 10.4 95 147-262 160-256 (343)
443 PRK05808 3-hydroxybutyryl-CoA 42.2 44 0.00096 30.3 4.8 39 149-189 5-45 (282)
444 PRK08643 acetoin reductase; Va 41.8 67 0.0015 28.2 5.9 57 149-207 4-62 (256)
445 cd00291 SirA_YedF_YeeD SirA, Y 41.8 85 0.0018 21.5 5.2 40 249-288 18-57 (69)
446 COG0604 Qor NADPH:quinone redu 41.6 1.8E+02 0.0038 27.2 8.8 95 147-263 143-240 (326)
447 cd08291 ETR_like_1 2-enoyl thi 41.6 1.5E+02 0.0032 27.2 8.3 34 154-188 152-186 (324)
448 PRK06194 hypothetical protein; 41.5 74 0.0016 28.5 6.2 58 148-207 7-66 (287)
449 cd03422 YedF YedF is a bacteri 41.5 1E+02 0.0022 21.5 5.6 42 247-288 16-57 (69)
450 PRK00050 16S rRNA m(4)C1402 me 41.4 48 0.001 30.7 4.8 37 243-280 215-252 (296)
451 PRK06181 short chain dehydroge 40.8 74 0.0016 28.0 6.0 57 149-207 3-61 (263)
452 PRK07062 short chain dehydroge 40.6 1.3E+02 0.0027 26.6 7.5 60 147-207 8-70 (265)
453 PRK07774 short chain dehydroge 40.5 1.3E+02 0.0027 26.2 7.4 59 147-207 6-66 (250)
454 PRK09135 pteridine reductase; 40.4 1.2E+02 0.0026 26.2 7.2 60 147-207 6-68 (249)
455 PRK07890 short chain dehydroge 39.7 81 0.0018 27.6 6.0 58 148-207 6-65 (258)
456 PRK05875 short chain dehydroge 39.3 1.3E+02 0.0028 26.8 7.3 60 147-207 7-69 (276)
457 cd08238 sorbose_phosphate_red 38.9 2.6E+02 0.0057 26.8 9.8 43 147-189 176-222 (410)
458 PRK08862 short chain dehydroge 38.7 1.3E+02 0.0028 26.2 7.1 58 147-206 5-64 (227)
459 PRK10458 DNA cytosine methylas 38.6 63 0.0014 32.0 5.4 43 147-190 88-130 (467)
460 COG2949 SanA Uncharacterized m 38.2 45 0.00098 29.1 3.8 38 3-40 53-102 (235)
461 TIGR02819 fdhA_non_GSH formald 38.0 3.7E+02 0.0079 25.7 11.2 104 148-262 187-297 (393)
462 PRK07035 short chain dehydroge 38.0 96 0.0021 27.1 6.2 59 147-207 8-68 (252)
463 PRK07063 short chain dehydroge 37.9 1.5E+02 0.0033 26.0 7.5 60 147-207 7-69 (260)
464 KOG0022 Alcohol dehydrogenase, 37.8 84 0.0018 29.5 5.7 42 147-188 193-235 (375)
465 PRK07478 short chain dehydroge 37.7 95 0.0021 27.2 6.1 58 148-207 7-66 (254)
466 PRK13394 3-hydroxybutyrate deh 37.3 1.3E+02 0.0029 26.2 7.1 58 148-207 8-67 (262)
467 PRK05599 hypothetical protein; 37.2 1.5E+02 0.0033 25.9 7.4 57 150-207 3-60 (246)
468 PRK05650 short chain dehydroge 37.1 93 0.002 27.6 6.1 57 149-207 2-60 (270)
469 PF06557 DUF1122: Protein of u 36.9 1.3E+02 0.0029 25.1 6.2 23 244-266 66-88 (170)
470 PF07101 DUF1363: Protein of u 36.8 12 0.00027 28.1 0.2 14 150-163 6-19 (124)
471 PLN02780 ketoreductase/ oxidor 36.8 1.4E+02 0.003 27.7 7.3 59 147-206 53-114 (320)
472 PF01206 TusA: Sulfurtransfera 36.8 94 0.002 21.4 4.8 43 246-288 16-58 (70)
473 PRK05866 short chain dehydroge 36.7 1.6E+02 0.0034 26.8 7.6 59 147-207 40-100 (293)
474 PRK05876 short chain dehydroge 36.6 1.5E+02 0.0033 26.5 7.4 59 147-207 6-66 (275)
475 PRK07231 fabG 3-ketoacyl-(acyl 36.5 79 0.0017 27.4 5.4 57 148-207 6-64 (251)
476 PF00106 adh_short: short chai 36.3 1.5E+02 0.0033 23.7 6.8 56 150-207 3-63 (167)
477 PRK07832 short chain dehydroge 36.1 95 0.002 27.6 5.9 55 151-206 4-60 (272)
478 PLN02586 probable cinnamyl alc 36.1 2.6E+02 0.0057 26.2 9.2 36 147-183 184-220 (360)
479 PLN02178 cinnamyl-alcohol dehy 35.8 2.5E+02 0.0054 26.6 9.0 35 147-182 179-214 (375)
480 PF01795 Methyltransf_5: MraW 35.7 46 0.001 31.0 3.8 37 243-280 220-257 (310)
481 PRK08277 D-mannonate oxidoredu 35.5 96 0.0021 27.6 5.9 59 147-207 10-70 (278)
482 PRK11908 NAD-dependent epimera 35.3 2.5E+02 0.0055 26.0 8.9 57 156-218 9-71 (347)
483 KOG3924 Putative protein methy 35.3 49 0.0011 31.8 3.9 61 147-207 193-262 (419)
484 PRK08303 short chain dehydroge 34.7 1.4E+02 0.003 27.4 6.9 59 147-207 8-78 (305)
485 PRK15062 hydrogenase isoenzyme 34.7 1.5E+02 0.0033 28.2 7.0 63 160-222 120-188 (364)
486 PRK08267 short chain dehydroge 34.6 80 0.0017 27.8 5.2 55 149-207 3-59 (260)
487 cd03423 SirA SirA (also known 34.5 1.3E+02 0.0028 20.9 5.2 42 247-288 16-57 (69)
488 COG1748 LYS9 Saccharopine dehy 34.3 87 0.0019 30.2 5.5 54 148-207 2-58 (389)
489 cd08286 FDH_like_ADH2 formalde 34.3 3.7E+02 0.008 24.6 10.7 95 148-262 168-264 (345)
490 PRK07097 gluconate 5-dehydroge 34.2 1.8E+02 0.0039 25.7 7.4 59 147-207 10-70 (265)
491 PRK09242 tropinone reductase; 34.0 1.7E+02 0.0037 25.5 7.2 60 147-207 9-71 (257)
492 PLN02353 probable UDP-glucose 33.8 4.8E+02 0.01 25.9 10.9 122 149-279 3-143 (473)
493 PRK12939 short chain dehydroge 33.5 1.8E+02 0.0039 25.1 7.2 59 147-207 7-67 (250)
494 PRK09186 flagellin modificatio 33.4 98 0.0021 27.0 5.5 60 147-207 4-66 (256)
495 PRK07109 short chain dehydroge 33.4 1.1E+02 0.0024 28.5 6.1 59 147-207 8-68 (334)
496 PRK08085 gluconate 5-dehydroge 33.0 1.9E+02 0.0042 25.2 7.4 59 147-207 9-69 (254)
497 PRK06139 short chain dehydroge 32.8 1.7E+02 0.0037 27.2 7.3 59 147-207 7-67 (330)
498 PLN02253 xanthoxin dehydrogena 32.8 1.6E+02 0.0035 26.2 6.9 58 147-207 18-77 (280)
499 PF14740 DUF4471: Domain of un 32.4 99 0.0021 28.5 5.3 37 248-284 238-284 (289)
500 TIGR01963 PHB_DH 3-hydroxybuty 32.3 1.2E+02 0.0026 26.3 5.9 56 150-207 4-61 (255)
No 1
>cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients.
Probab=100.00 E-value=4.8e-34 Score=267.26 Aligned_cols=159 Identities=28% Similarity=0.499 Sum_probs=138.8
Q ss_pred CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHHcCCCCCCccccCCchHHHHHHHHHHHhcCceEe
Q 019743 2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL 81 (336)
Q Consensus 2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a~g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i~ 81 (336)
+++|+||+++|||||||+|||++|+||+++||++|+||+||||||+|+|++||++++|++.++.|+++++++++++++|.
T Consensus 184 l~~p~rP~vaIlGGaKvsdKi~vl~~Ll~kvD~liigG~ma~tFL~A~G~~iG~sl~e~~~i~~a~~il~~a~~~~~~I~ 263 (397)
T cd00318 184 LENPERPFVAILGGAKVSDKIQVIENLLDKVDYLIIGGGMAFTFLKAQGMDIGKSLFEEDGIELAKSLLEKAKAKGVKIV 263 (397)
T ss_pred HcCCCCCeEEEEcCccHHhHHHHHHHHHHhcCEEEECcHHHHHHHHHcCCCcCccccChhhHHHHHHHHHHhHhcCCEEE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeeccCC-CCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHH
Q 019743 82 YPKDFWCTKIHH-PNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLF 160 (336)
Q Consensus 82 ~Pvd~~~~~~~~-~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~ 160 (336)
+|+|+++++.|. +.+.++.+...||.+||++||||+|.+.|.+.+.+++ ||+||||++--+.+ -.-.||=.+
T Consensus 264 lPvD~~v~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~ak----tI~wNGP~GvfE~~---~F~~GT~~l 336 (397)
T cd00318 264 LPVDVVVADKFKADANTKVVTDDGIPDGWMGLDIGPKTIELFAEVIRKAK----TIVWNGPMGVFEFP---AFAKGTKAI 336 (397)
T ss_pred CCceEEEeeccCCCCceEEEecccCCCCCEEEeeCHHHHHHHHHHHhhCC----EEEEECCCcCccCC---cccHHHHHH
Confidence 999999996642 3344566788999999999999999999999999999 99999997542222 223455556
Q ss_pred HHHHHHh
Q 019743 161 LLGMARK 167 (336)
Q Consensus 161 ~~~la~~ 167 (336)
+.++|+.
T Consensus 337 ~~aia~~ 343 (397)
T cd00318 337 ADAIAAA 343 (397)
T ss_pred HHHHHHh
Confidence 6667764
No 2
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=100.00 E-value=7.8e-34 Score=265.21 Aligned_cols=166 Identities=27% Similarity=0.458 Sum_probs=143.9
Q ss_pred CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHHcCCCCCCccccCCchHHHHHHHHHHHhcCceEe
Q 019743 2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL 81 (336)
Q Consensus 2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a~g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i~ 81 (336)
+++|+||+++|||||||+|||.+|+|++++||++|+||+||||||+|+|++||++++|++.++.|+++++++++++++|.
T Consensus 180 l~~p~rP~vaIlGGaKvsdKi~vi~~Ll~~~D~liigG~ma~tFl~A~G~~ig~sl~e~~~i~~a~~il~~a~~~~~~i~ 259 (389)
T PRK00073 180 LENPERPFVAILGGAKVSDKIGVLENLLEKVDKLIIGGGMANTFLKAQGYNVGKSLVEEDLIDTAKELLEKAKEKGVKIP 259 (389)
T ss_pred hcCCCCCeEEEEcCccHHhHHHHHHHHHHhhhhheeChHHHHHHHHHcCCCcChhhcchhhHHHHHHHHHHHHhcCCEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeeccCCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHH
Q 019743 82 YPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFL 161 (336)
Q Consensus 82 ~Pvd~~~~~~~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~ 161 (336)
+|+|+++.++|.+....+.+...||.+|+++||||+|.+.|.+.+.+++ ||+||||++--+.+ ....||=.++
T Consensus 260 lPvD~vv~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~ak----ti~wNGP~GvfE~~---~F~~GT~~l~ 332 (389)
T PRK00073 260 LPVDVVVAKEFSDAEATVVSVDEIPDDWMILDIGPKTIELFAEIIKDAK----TIVWNGPMGVFEFE---NFAKGTKAVA 332 (389)
T ss_pred CCCeeEEeeccCCCceEEeEcccCCCCCeeeecCHHHHHHHHHHHhhCC----EEEEECCCCccccc---cchHHHHHHH
Confidence 9999999876544445566788899999999999999999999999999 99999997543222 2345666666
Q ss_pred HHHHHhCCCCeEEE
Q 019743 162 LGMARKRKDLNFLG 175 (336)
Q Consensus 162 ~~la~~~p~~~v~g 175 (336)
.++|+.. ...++|
T Consensus 333 ~aia~~~-a~sivG 345 (389)
T PRK00073 333 KAIAEST-AFSIIG 345 (389)
T ss_pred HHHHhcC-CeEEEc
Confidence 6666643 455665
No 3
>COG0126 Pgk 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.9e-34 Score=262.38 Aligned_cols=162 Identities=27% Similarity=0.415 Sum_probs=136.7
Q ss_pred CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHHcCCCCCCccccCCchHHHHHHHHHHHhcCceEe
Q 019743 2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL 81 (336)
Q Consensus 2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a~g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i~ 81 (336)
+++|+||+|+|||||||+|||+||+||+++||++|+||+|+||||+|+|+++|++++|.+.++.|++|++++++ +|.
T Consensus 186 l~~p~rP~vaIlGGaKVsdki~vienLl~kaD~liigGgma~tFl~A~G~~vG~sl~E~~~~~~Ak~ll~k~~~---~I~ 262 (395)
T COG0126 186 LENPERPFVAILGGAKVSDKIGVIENLLKKADKLIIGGGMANTFLKAQGYDVGKSLVEFDLIDGAKELLEKAKD---KIV 262 (395)
T ss_pred hcCCCCceEEEeeccccchHHHHHHHHHHhcCeEEecchHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhCC---cEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999887654 899
Q ss_pred ccceeeeeccCC-CCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHH
Q 019743 82 YPKDFWCTKIHH-PNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLF 160 (336)
Q Consensus 82 ~Pvd~~~~~~~~-~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~ 160 (336)
+|+|+++++.|. +....+.+ .||.+||++||||+|.+.|++.++.++ ||+||||.+--+ +=....||=.+
T Consensus 263 lPvD~~v~~~f~~~~~~~~~~--~i~~~~~~lDIGp~Ti~~~~~~i~~Ak----tivwNGP~GVfE---~~~Fa~GT~~v 333 (395)
T COG0126 263 LPVDVVVAKEFSRDAPATVKL--EIPDDLMILDIGPKTIELFAEIIKGAK----TIVWNGPMGVFE---FENFAKGTEEV 333 (395)
T ss_pred CcceeEEcccccccccccccc--CCCCCccccccCHHHHHHHHHHHhhCC----EEEEeCCcccee---cchhhhhHHHH
Confidence 999999997753 33333433 899999999999999999999999999 999999975321 22345677777
Q ss_pred HHHHHHhCCCCeEEE
Q 019743 161 LLGMARKRKDLNFLG 175 (336)
Q Consensus 161 ~~~la~~~p~~~v~g 175 (336)
+.++|+......|+|
T Consensus 334 ~~aia~~~~a~SiiG 348 (395)
T COG0126 334 AKAIAKSSGAFSIIG 348 (395)
T ss_pred HHHHHhcCCCeEEEC
Confidence 777777522345554
No 4
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=100.00 E-value=2.1e-32 Score=236.99 Aligned_cols=187 Identities=27% Similarity=0.532 Sum_probs=153.4
Q ss_pred ccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhc
Q 019743 135 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA 214 (336)
Q Consensus 135 ~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivs 214 (336)
.+.|...|++ ..+.+||||||.|.+++.+|+++|+.+++|+|++...+..|.+++.+.+++|+.++++|+...++.++
T Consensus 7 ~~~~~~~f~~-~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~- 84 (195)
T PF02390_consen 7 PLDWQEIFGN-DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLF- 84 (195)
T ss_dssp TTCHHHHHTS-CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHS-
T ss_pred ccCHHHHcCC-CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcc-
Confidence 6778888876 36699999999999999999999999999999999999999999999999999999999998878777
Q ss_pred CCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHc--CCcceeeecccc
Q 019743 215 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY--GKGKLVLVQDEC 292 (336)
Q Consensus 215 npp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~--g~~~~~~~~d~~ 292 (336)
+|.+++.++++|||||++.+|+++|++.+.|++.+.++|+|||.+++.||+..|++++.+.+.++ +|.......+ +
T Consensus 85 -~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~~~~~~-~ 162 (195)
T PF02390_consen 85 -PPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENIEESDD-L 162 (195)
T ss_dssp -TTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE-TESS-G
T ss_pred -cCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEcccCcc-c
Confidence 57899999999999999999999999999999999999999999999999999999999999995 4543322222 1
Q ss_pred ccccCCCCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEeC
Q 019743 293 DTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKP 332 (336)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~t~~e~~~~~~G~~i~~~~~~~~ 332 (336)
+. ..-....+.|+||++|.++|.+||+++|+|.
T Consensus 163 ----~~---~~~~~~~~~T~yE~k~~~~G~~i~~~~f~k~ 195 (195)
T PF02390_consen 163 ----HE---SPFDDDYIPTKYERKWLAEGKPIYRLIFKKV 195 (195)
T ss_dssp ----GC---SCCCTTCCSSHHHHHHHHTTSS-EEEEEEE-
T ss_pred ----cc---CCCCCCCCCCHHHHHHHHCCCCCEEEEEEEC
Confidence 10 0111257899999999999999999999984
No 5
>PLN03034 phosphoglycerate kinase; Provisional
Probab=100.00 E-value=1.7e-33 Score=266.39 Aligned_cols=158 Identities=28% Similarity=0.494 Sum_probs=138.5
Q ss_pred CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHHcCCCCCCccccCCchHHHHHHHHHHHhcCceEe
Q 019743 2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL 81 (336)
Q Consensus 2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a~g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i~ 81 (336)
+++|+||+++|+||+||+|||++|+||+++||++|+||+|+||||.|+|++||++++|++.++.|++|+++++++|++|.
T Consensus 262 ~~~p~rP~vaIlGGaKVsdKI~vi~~Ll~kvD~lliGG~ma~tFl~A~G~~IG~slvE~d~i~~A~~il~~a~~~gv~I~ 341 (481)
T PLN03034 262 VSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLELATSLLAKAKAKGVSLL 341 (481)
T ss_pred HcCCCCceEEEEcCccHHhHHHHHHHHHHhcCEEEECcHHHHHHHHHcCCCcchhhcChhhhHHHHHHHHHHHhcCCEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeeccCC-CCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHH
Q 019743 82 YPKDFWCTKIHH-PNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLF 160 (336)
Q Consensus 82 ~Pvd~~~~~~~~-~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~ 160 (336)
+|+|+++.+.|. +.+..+.+...||.+||++||||+|.+.|.+.+++++ ||+||||++--+.+ ...-||=.+
T Consensus 342 lPvD~v~a~~~~~~~~~~~~~~~~Ip~~~~~lDIGp~Ti~~~~~~i~~ak----TI~WNGPmGvFE~~---~Fa~GT~~l 414 (481)
T PLN03034 342 LPTDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSVKTFNEALDTTQ----TVIWNGPMGVFEFE---KFAVGTEAV 414 (481)
T ss_pred CCceEEEecccCCCCCeEEeehhcCCCCCEEEecCHHHHHHHHHHHhhCC----EEEEECCcccccCC---cchHHHHHH
Confidence 999999997642 3344555778899999999999999999999999999 99999997532211 234466566
Q ss_pred HHHHHH
Q 019743 161 LLGMAR 166 (336)
Q Consensus 161 ~~~la~ 166 (336)
+..+++
T Consensus 415 ~~aia~ 420 (481)
T PLN03034 415 AKKLAE 420 (481)
T ss_pred HHHHHH
Confidence 666666
No 6
>PLN02282 phosphoglycerate kinase
Probab=100.00 E-value=1.6e-33 Score=263.75 Aligned_cols=168 Identities=28% Similarity=0.461 Sum_probs=143.0
Q ss_pred CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHHcCCCCCCccccCCchHHHHHHHHHHHhcCceEe
Q 019743 2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL 81 (336)
Q Consensus 2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a~g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i~ 81 (336)
+++|+||+++|+|||||+|||.+|+|++++||++|+||+||||||+|+|++||++++|++.++.|++++++++++|++|.
T Consensus 187 l~~p~rP~vaIlGGaKvsdKi~vi~~Ll~kvD~lliGG~ma~tFl~A~G~~iG~sl~e~d~i~~a~~il~~a~~~g~~I~ 266 (401)
T PLN02282 187 VANPKKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGYSVGSSLVEEDKLDLATSLIEKAKAKGVSLL 266 (401)
T ss_pred hcCCCCCeEEEEcCCcHHhHHHHHHHHHHhhhhheeccHHHHHHHHHcCCCcChhhcChhhHHHHHHHHHHHHhcCCEEe
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeeccCC-CCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHH
Q 019743 82 YPKDFWCTKIHH-PNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLF 160 (336)
Q Consensus 82 ~Pvd~~~~~~~~-~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~ 160 (336)
+|+|+++.+.|. +.+..+.+...||.+|+++||||+|.+.|.+.+++++ ||+||||++--+.+ ..--||=.+
T Consensus 267 lPvD~v~~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~ak----tI~wNGP~GvfE~~---~F~~GT~~l 339 (401)
T PLN02282 267 LPTDVVIADKFAPDANSKVVPASAIPDGWMGLDIGPDSIKTFSEALDTTK----TIIWNGPMGVFEFE---KFAAGTEAI 339 (401)
T ss_pred CCceEEEecccCCCCCeEEeehhcCCCCCeeeccCHHHHHHHHHHHhhCC----EEEEECCcCCccCc---chhHHHHHH
Confidence 999999997652 2234555788899999999999999999999999999 99999997532211 234566677
Q ss_pred HHHHHHhC-C-CCeEEEE
Q 019743 161 LLGMARKR-K-DLNFLGL 176 (336)
Q Consensus 161 ~~~la~~~-p-~~~v~gi 176 (336)
+.++|+.. + ...++|=
T Consensus 340 ~~aia~~t~~~a~sivGG 357 (401)
T PLN02282 340 AKKLAELSGKGVTTIIGG 357 (401)
T ss_pred HHHHHHhhcCCCEEEEeC
Confidence 77777632 2 3345553
No 7
>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2.7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....
Probab=100.00 E-value=4.3e-33 Score=260.88 Aligned_cols=166 Identities=28% Similarity=0.522 Sum_probs=137.5
Q ss_pred CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHHcCCCCCCccccCCchHHHHHHHHHHHhcCceEe
Q 019743 2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL 81 (336)
Q Consensus 2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a~g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i~ 81 (336)
+++|+||+++|+|||||+|||++|+|++++||++|+||+||||||+|+|+++|+++++++.++.|++++++++++|++|.
T Consensus 184 ~~~~~rP~vaIlGGaKvsdKi~vl~~Ll~kvD~liigG~ma~tFl~A~G~~iG~s~~e~~~i~~a~~ll~~~~~~g~~i~ 263 (384)
T PF00162_consen 184 LENPKRPFVAILGGAKVSDKIGVLENLLDKVDKLIIGGGMANTFLKAQGYEIGKSLVEEDLIEEAKELLEKAKDRGVKIV 263 (384)
T ss_dssp HHS-SSSEEEEEESS-HHHHHHHHHHHTTTSSEEEEETTHHHHHHHHTTHBBTTSSCHGGGHHHHHHHHHHHHHTT-EEE
T ss_pred hcCCCCCeEEEEeCCchHhHHHHHHHHHHHHHHHeeChhHHHHHHHHcCCcccccchhhhhHHHHHHHHHHHHhcCceEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeeccC-CCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHH
Q 019743 82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLF 160 (336)
Q Consensus 82 ~Pvd~~~~~~~-~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~ 160 (336)
+|+|+++...| .+.+.++.+...||.+|+++||||+|.+.|.+.+..++ ||+||||++--+.+ ..--||=.+
T Consensus 264 lPvD~~v~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~ak----tv~wNGP~GvfE~~---~F~~GT~~l 336 (384)
T PF00162_consen 264 LPVDFVVADEFSDGARVEVVPADEIPDGWMILDIGPKTIELFSEIIKKAK----TVFWNGPMGVFEIE---NFAEGTRAL 336 (384)
T ss_dssp --SEEEEESSSSTTSCEEEEETTGBCTTSEEEEE-HHHHHHHHHHHHT-S----EEEEES-SS-TTSG---GGCHHHHHH
T ss_pred EEEEEeehhcccCCCCcEeccccccCCCCeeeccCHHHHHHHHHHHhCCC----eEEEECCcccCchh---hhhHHHHHH
Confidence 99999999774 45566777889999999999999999999999999999 99999997643222 224466667
Q ss_pred HHHHHHhCCCCeEEE
Q 019743 161 LLGMARKRKDLNFLG 175 (336)
Q Consensus 161 ~~~la~~~p~~~v~g 175 (336)
+.++|+. ....++|
T Consensus 337 ~~aia~~-~a~sivG 350 (384)
T PF00162_consen 337 AKAIAKS-GAFSIVG 350 (384)
T ss_dssp HHHHHHH-TSEEEEE
T ss_pred HHHHHhc-CCeEEEc
Confidence 7777777 3345665
No 8
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=99.98 E-value=2.8e-32 Score=256.49 Aligned_cols=168 Identities=26% Similarity=0.517 Sum_probs=140.6
Q ss_pred CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHH-cCCCCCCccccCCchHHHHHHHHHHHhcCceE
Q 019743 2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHA-LGLPVPPELVEKGANDAASDLIQFARDKHITI 80 (336)
Q Consensus 2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a-~g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i 80 (336)
+++|+||+++|+|||||+|||.+|+||+++||++|+||+|+|+||+| .|++||++++|++.++.|++++++++++|++|
T Consensus 201 ~~~p~rP~vaIlGGaKvsdKi~vl~~Ll~k~D~iligG~ma~tFL~A~~G~~iG~sl~E~~~i~~a~~il~~a~~~~~~I 280 (417)
T PTZ00005 201 LENPQRPFLAILGGAKVADKIQLIKNLLDKVDEMIIGGGMAFTFKKVLDNMPIGKSLFDEEGAKIVKEIMEKAKEKNVKI 280 (417)
T ss_pred hcCCCCceEEEEcCccHHhHHHHHHHHHHhcCEEEECcHHHHHHHHHhCCCccCccccChhhHHHHHHHHHHHHhcCCEE
Confidence 57899999999999999999999999999999999999999999999 68999999999999999999999999999999
Q ss_pred eccceeeeeccCC--CCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEecccc
Q 019743 81 LYPKDFWCTKIHH--PNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNG 158 (336)
Q Consensus 81 ~~Pvd~~~~~~~~--~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG 158 (336)
.+|+|+++.+.|. +....+.+...||.+||++||||+|.+.|.+.++.++ ||+||||++--+.+ ..--||=
T Consensus 281 ~lPvD~~v~~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~ak----TV~wNGP~GvFE~~---~F~~GT~ 353 (417)
T PTZ00005 281 HLPVDFVCADKFDNNANTKVVTDKEGIPDGWMGLDAGPKSIEEFAEAILRAK----TIVWNGPQGVFEMP---NFAKGSI 353 (417)
T ss_pred eCCceEEEecccCCCCCeEEecCccCCCCCCEEeccCHHHHHHHHHHHhhCC----EEEEECCCccccCC---cchHHHH
Confidence 9999999986542 3323333566799999999999999999999999999 99999998632222 2345666
Q ss_pred HHHHHHHHhC-C-CCeEEEE
Q 019743 159 LFLLGMARKR-K-DLNFLGL 176 (336)
Q Consensus 159 ~~~~~la~~~-p-~~~v~gi 176 (336)
.++.++|+.. . ...++|=
T Consensus 354 ~i~~aia~~t~~~a~sivGG 373 (417)
T PTZ00005 354 AMLDAVVKATEKGAITIVGG 373 (417)
T ss_pred HHHHHHHHhccCCCEEEEeC
Confidence 6666677632 2 2355553
No 9
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.98 E-value=6.6e-31 Score=231.08 Aligned_cols=189 Identities=26% Similarity=0.361 Sum_probs=162.0
Q ss_pred cccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcC
Q 019743 136 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS 215 (336)
Q Consensus 136 i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsn 215 (336)
..|...|+++..+.+||||||+|.+.+.+|+++|+.+++|||+....+..|.+.+.+.+++|+.+++.|+...++.++
T Consensus 38 ~~~~~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~-- 115 (227)
T COG0220 38 GDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLI-- 115 (227)
T ss_pred chHHHHhCCCCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcC--
Confidence 345566666556899999999999999999999999999999999999999999999999999999999999888876
Q ss_pred CCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeeccccccc
Q 019743 216 YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTK 295 (336)
Q Consensus 216 pp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~ 295 (336)
|+++++.|+++|||||+|.+|+++|++++.|++.+.+.|+|||.+++.||+.+|++++.....+..+.......|.+
T Consensus 116 ~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~~~~~~~~~~~~~--- 192 (227)
T COG0220 116 PDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEHPPFLKFESEDLH--- 192 (227)
T ss_pred CCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhcchhhhccccccc---
Confidence 56699999999999999999999999999999999999999999999999999999954444455444333333311
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEeCC
Q 019743 296 TNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPS 333 (336)
Q Consensus 296 ~~~~~~~~~~~~~~~t~~e~~~~~~G~~i~~~~~~~~~ 333 (336)
. |....+..+.|+||+++.+.|.+|+++.+++..
T Consensus 193 --~--~~~~~~~~~~T~yE~k~~~~g~~i~~l~~~~~~ 226 (227)
T COG0220 193 --Y--NLPPPDNNPVTEYEQKFRRLGHPVYDLEFIKKK 226 (227)
T ss_pred --c--ccccccCCCCcHHHHHHHhCCCceEEEEEEecC
Confidence 1 234445678899999999999999999999875
No 10
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=99.97 E-value=8.9e-32 Score=266.08 Aligned_cols=139 Identities=29% Similarity=0.527 Sum_probs=129.3
Q ss_pred CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHHcCCCCCCccccCCchHHHHHHHHHHHhcCceEe
Q 019743 2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITIL 81 (336)
Q Consensus 2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a~g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i~ 81 (336)
+++|+||+++|||||||+|||++|+||+++||++|+||+||||||+|+|++||++++|++.++.|+++++++++++++|.
T Consensus 183 l~~p~rP~vaIlGGaKvsdKi~vl~~ll~~~D~iligG~ma~tFl~a~G~~ig~sl~e~~~~~~a~~il~~a~~~~~~i~ 262 (645)
T PRK13962 183 LANPQRPFVAILGGAKVSDKIGVIENLLEKVDKLLIGGGMAYTFLKAKGYEVGKSLVEEDKLDLAKELLAKAEEKGVKLL 262 (645)
T ss_pred HcCCCCceEEEEcCccHHhHHHHHHHHHHhCCEEEECcHHHHHHHHHcCCCCChhhcChhhHHHHHHHHHHHHhcCCEEE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeeccC-CCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCC
Q 019743 82 YPKDFWCTKIH-HPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHD 144 (336)
Q Consensus 82 ~Pvd~~~~~~~-~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~ 144 (336)
+|+|+++.+.| .+.+..+.+...||.+||++||||+|.+.|.+.+.+++ ||+||||++-
T Consensus 263 lPvD~~~~~~~~~~~~~~~~~~~~ip~~~~~lDIGp~Ti~~~~~~i~~ak----ti~wNGP~Gv 322 (645)
T PRK13962 263 LPVDSVVAKEFKNDAEHKVVPSDAIPEDWMGLDIGPETIELFAKKIADAK----TIVWNGPMGV 322 (645)
T ss_pred CCcEEEeecccCCCCceEEEecccCCCCCEEEeeCHHHHHHHHHHHhhCC----EEEEECCCcc
Confidence 99999998764 23444555778899999999999999999999999998 9999999754
No 11
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.97 E-value=1.2e-29 Score=220.44 Aligned_cols=183 Identities=22% Similarity=0.389 Sum_probs=155.6
Q ss_pred cccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcC
Q 019743 136 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS 215 (336)
Q Consensus 136 i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsn 215 (336)
..|+..|++ +.+++||||||+|.++..+|+++|+.+++|+|+|+++++.|++++...++.|++++++|+.+..+..+
T Consensus 7 ~~~~~~f~~-~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~-- 83 (194)
T TIGR00091 7 PDFATVFGN-KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF-- 83 (194)
T ss_pred CCHHHHhCC-CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC--
Confidence 346666654 46899999999999999999999999999999999999999999999888999999999987644444
Q ss_pred CCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcC-Ccceeeecccccc
Q 019743 216 YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG-KGKLVLVQDECDT 294 (336)
Q Consensus 216 pp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g-~~~~~~~~d~~~~ 294 (336)
|+.+++.+++++|+||++.+|+++|+..+.+++++.++|||||.+++.++...+.+++.+.+.+++ |.......| +
T Consensus 84 ~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~~~~~~-~-- 160 (194)
T TIGR00091 84 PDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENTSKSTD-L-- 160 (194)
T ss_pred CCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEecccccc-c--
Confidence 455789999999999999888888899999999999999999999999999999999999998887 654433333 1
Q ss_pred ccCCCCCCCCCC---CCCCCHHHHHHHHcCCCeEEEEEEeC
Q 019743 295 KTNQGGWLGENS---FGVRSDWEQHVIDRGAPMYRLMLSKP 332 (336)
Q Consensus 295 ~~~~~~~~~~~~---~~~~t~~e~~~~~~G~~i~~~~~~~~ 332 (336)
...+ ..+.|+||++|.++|.+||+++|+|.
T Consensus 161 --------~~~~~~~~~~~T~~E~~~~~~g~~i~~~~~~~~ 193 (194)
T TIGR00091 161 --------NNSPLSRPRNMTEYEQRFERLGHPVFDLCFERL 193 (194)
T ss_pred --------CCCcccccCcCCHHHHHHHHCCCCeEEEEEEEC
Confidence 1222 23469999999999999999999986
No 12
>KOG1367 consensus 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=4.8e-31 Score=233.05 Aligned_cols=159 Identities=25% Similarity=0.485 Sum_probs=134.7
Q ss_pred CCCCCCcEEEEEcCCcccchHHHHHHHHhccceEEEehhHHHHHHHHc-CCCCCCccccCCchHHHHHHHHHHHhcCceE
Q 019743 2 AKLDEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGANDAASDLIQFARDKHITI 80 (336)
Q Consensus 2 ~~~~~~p~~~v~gG~k~~d~i~~~~~~l~~~D~~l~~G~v~~~fl~a~-g~~~g~~~~~~~~~~~a~~l~~~~~~~~~~i 80 (336)
+++|.|||.+||||+||+|||++|+|||+++|.+|+||+|++|||++. |+.||+|++|++..+.+++|++++++++.+|
T Consensus 199 lenp~rPFlaIlGGaKVadKIqlI~nLldkv~~liigGGMaftFlKvl~~~eiG~Sl~de~g~e~v~~l~~kak~~~v~i 278 (416)
T KOG1367|consen 199 LENPVRPFLAILGGAKVADKIQLIENLLDKVNELIIGGGMAFTFLKVLNGMEIGKSLFDEEGAEIVKDLMEKAKAKGVRI 278 (416)
T ss_pred HcCCCcchhhhhcCchhhhHHHHHHHHHhhcceEEEcCceeehHHHHhCCcchhhhhhhhhhHHHHHHHHHHHHHcCcEE
Confidence 579999999999999999999999999999999999999999999999 6999999999999999999999999999999
Q ss_pred eccceeeeeccC-CCCC-eeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEecccc
Q 019743 81 LYPKDFWCTKIH-HPNQ-VEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNG 158 (336)
Q Consensus 81 ~~Pvd~~~~~~~-~~~~-~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG 158 (336)
.+|+|+++++.| .+.. -.++....||++||.+|+||+|.+.++..+.+++ +|+||||.+--+.. -...||=
T Consensus 279 ~lPvDfv~adkf~~da~s~~~ta~~gIp~g~mgLD~GPes~k~fa~~v~~aK----tIvWNGP~GvfE~~---~Fa~GTe 351 (416)
T KOG1367|consen 279 LLPVDFVIADKFAEDANSKQVTAEEGIPDGWMGLDIGPESIKMFAEAVATAK----TIVWNGPPGVFEFE---KFAAGTE 351 (416)
T ss_pred EeeeeeeeeccccCccccceeccccCCCCCccccccChHHHHHHHHHHhhhh----EEEecCCCcccchh---hhhhhHH
Confidence 999999999775 2222 2344345799999999999999999999999999 99999985321111 1244565
Q ss_pred HHHHHHHHh
Q 019743 159 LFLLGMARK 167 (336)
Q Consensus 159 ~~~~~la~~ 167 (336)
.+.-.+.+.
T Consensus 352 al~d~~v~~ 360 (416)
T KOG1367|consen 352 ALMDALVKL 360 (416)
T ss_pred HHHHHHHHH
Confidence 565555554
No 13
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.6e-28 Score=223.98 Aligned_cols=205 Identities=14% Similarity=0.196 Sum_probs=161.2
Q ss_pred ccCCchHHHHHHHHHHHhcCceEeccceeeeecc-CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCccc
Q 019743 58 VEKGANDAASDLIQFARDKHITILYPKDFWCTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDI 136 (336)
Q Consensus 58 ~~~~~~~~a~~l~~~~~~~~~~i~~Pvd~~~~~~-~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i 136 (336)
++++..+...+++++. ..++ |++|+++.. |+|.++.+.+.+.|| +|+|+.+++.++.....
T Consensus 48 ~~~~~~~~~~~~~~rr-~~~~----P~~yi~g~~~f~gl~~~v~~~vliP--------r~dTe~Lve~~l~~~~~----- 109 (280)
T COG2890 48 LSEEELERLRELLERR-AEGE----PVAYILGSAEFGGLRFKVDEGVLIP--------RPDTELLVEAALALLLQ----- 109 (280)
T ss_pred cCHHHHHHHHHHHHHH-HCCC----CHhHhhccCeecceeeeeCCCceec--------CCchHHHHHHHHHhhhh-----
Confidence 4444566667777774 4454 999999988 999999999999999 69999999987632220
Q ss_pred ccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH----HHHhh
Q 019743 137 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS----TFRSI 212 (336)
Q Consensus 137 ~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~----~~d~i 212 (336)
...+|||||||||++++.+|++.|+++|+|+|+|+.|++.|++|+..+++.++.++++|++. .||.|
T Consensus 110 ---------~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlI 180 (280)
T COG2890 110 ---------LDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLI 180 (280)
T ss_pred ---------cCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEE
Confidence 11179999999999999999999999999999999999999999999998888888889876 48999
Q ss_pred hcCCCCeEEEEEeeCCCCCCCcch------hhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcC-Ccce
Q 019743 213 VASYPGKLILVSIQCPNPDFNRPE------HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG-KGKL 285 (336)
Q Consensus 213 vsnpp~~~d~i~~~~~dp~~~~~~------~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g-~~~~ 285 (336)
+|||||.........+......++ .....++++|+.++.++|+|||.+.+++++ ++.+.+.+++.+.+ |..+
T Consensus 181 VsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~-~q~~~v~~~~~~~~~~~~v 259 (280)
T COG2890 181 VSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL-TQGEAVKALFEDTGFFEIV 259 (280)
T ss_pred EeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC-CcHHHHHHHHHhcCCceEE
Confidence 999999765411111111001111 112346899999999999999999999986 56899999999999 5656
Q ss_pred eeecc
Q 019743 286 VLVQD 290 (336)
Q Consensus 286 ~~~~d 290 (336)
...+|
T Consensus 260 ~~~~d 264 (280)
T COG2890 260 ETLKD 264 (280)
T ss_pred EEEec
Confidence 66666
No 14
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.96 E-value=2.7e-27 Score=222.01 Aligned_cols=169 Identities=19% Similarity=0.318 Sum_probs=148.5
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
+++.+||||||+|.+++.+|+++|+.+++|+|+++.+++.|.+++..++++|+.++++|+...++ .+ |+.++|.+++
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~-~~--~~~s~D~I~l 198 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLE-LL--PSNSVEKIFV 198 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhh-hC--CCCceeEEEE
Confidence 46799999999999999999999999999999999999999999999999999999999976543 23 6788999999
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeeccccccccCCCCCCCCC
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGEN 305 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~~~~~~~~~ 305 (336)
+||+||++.+| +|++.+.+++++.++|+|||.+.+.||+.+|++++.+.+.+.+....... ...
T Consensus 199 nFPdPW~KkrH--RRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~~~~--------------~~~ 262 (390)
T PRK14121 199 HFPVPWDKKPH--RRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKIEIK--------------KNA 262 (390)
T ss_pred eCCCCccccch--hhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCceeecc--------------cCC
Confidence 99999998876 68889999999999999999999999999999999999988754322111 123
Q ss_pred CCCCCCHHHHHHHHcCCCeEEEEEEeCC
Q 019743 306 SFGVRSDWEQHVIDRGAPMYRLMLSKPS 333 (336)
Q Consensus 306 ~~~~~t~~e~~~~~~G~~i~~~~~~~~~ 333 (336)
+..+.|+||++|.++|.+||++.|++..
T Consensus 263 ~~~i~TkyE~r~~~~G~~Iy~l~~~~~~ 290 (390)
T PRK14121 263 QLEVSSKYEDRWKKQNKDIYDLRIYNLE 290 (390)
T ss_pred CCCCCCHHHHHHHHCCCCEEEEEEEeCC
Confidence 4477899999999999999999999875
No 15
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.95 E-value=4.8e-27 Score=221.55 Aligned_cols=201 Identities=16% Similarity=0.166 Sum_probs=159.6
Q ss_pred cCCchHHHHHHHHHHHhcCceEeccceeeeecc-CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccc
Q 019743 59 EKGANDAASDLIQFARDKHITILYPKDFWCTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDID 137 (336)
Q Consensus 59 ~~~~~~~a~~l~~~~~~~~~~i~~Pvd~~~~~~-~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~ 137 (336)
+++..+..++++++. ..|+ |++||+|.. |+|.++.+.+.+.+| +|+|+..++.++....
T Consensus 191 ~~~~~~~~~~~v~RR-~~ge----PlqYIlG~~~F~G~~f~V~p~vLIP--------RpeTE~LVe~aL~~l~------- 250 (423)
T PRK14966 191 PDEVRQRADRLAQRR-LNGE----PVAYILGVREFYGRRFAVNPNVLIP--------RPETEHLVEAVLARLP------- 250 (423)
T ss_pred CHHHHHHHHHHHHHH-HcCC----CceeEeeeeeecCcEEEeCCCccCC--------CccHHHHHHHhhhccC-------
Confidence 333456677777774 3454 999999998 999999999999998 5999999998876422
Q ss_pred cccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH-------HHH
Q 019743 138 WSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS-------TFR 210 (336)
Q Consensus 138 ~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~-------~~d 210 (336)
+..++||+|||||++++.+++..|+.+++|+|+|+.|++.|++|++.++. ++.++++|+.+ .||
T Consensus 251 --------~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~l~~~~~FD 321 (423)
T PRK14966 251 --------ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTDMPSEGKWD 321 (423)
T ss_pred --------CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhccccccCCCcc
Confidence 23589999999999999999999999999999999999999999988775 79999999843 389
Q ss_pred hhhcCCCCeEEEEEeeCCCCCCC-cch------hhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCc
Q 019743 211 SIVASYPGKLILVSIQCPNPDFN-RPE------HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 283 (336)
Q Consensus 211 ~ivsnpp~~~d~i~~~~~dp~~~-~~~------~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~ 283 (336)
.|+|||||...... ....+..+ .++ .....+++++++.+.+.|+|||.++++++. ++.+.+.+++.+.||.
T Consensus 322 LIVSNPPYI~~~e~-~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~-~Q~e~V~~ll~~~Gf~ 399 (423)
T PRK14966 322 IIVSNPPYIENGDK-HLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF-DQGAAVRGVLAENGFS 399 (423)
T ss_pred EEEECCCCCCcchh-hhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc-cHHHHHHHHHHHCCCc
Confidence 99999999643211 11111100 000 112245789999999999999999999987 6789999999999998
Q ss_pred ceeeecc
Q 019743 284 KLVLVQD 290 (336)
Q Consensus 284 ~~~~~~d 290 (336)
.+++.+|
T Consensus 400 ~v~v~kD 406 (423)
T PRK14966 400 GVETLPD 406 (423)
T ss_pred EEEEEEc
Confidence 8888877
No 16
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.94 E-value=1.5e-26 Score=227.36 Aligned_cols=218 Identities=14% Similarity=0.135 Sum_probs=163.2
Q ss_pred cCCchHHHHHHHHHHHhcCceEeccceeeeecc-CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCC---Cc
Q 019743 59 EKGANDAASDLIQFARDKHITILYPKDFWCTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAF---PF 134 (336)
Q Consensus 59 ~~~~~~~a~~l~~~~~~~~~~i~~Pvd~~~~~~-~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~---~~ 134 (336)
+++..+..++++++.. .|+ |++||+|+. |+|.+|.|.+.++|| +|||+.+++.+++..+.. +.
T Consensus 52 ~~~~~~~~~~~~~rr~-~~e----PlqYI~G~~~F~g~~f~V~~~VLIP--------RpeTE~Lve~~l~~~~~~~~~~~ 118 (506)
T PRK01544 52 NEAEIEAFEKLLERRL-KHE----PIAYITGVKEFYSREFIVNKHVLIP--------RSDTEVLVDVVFQCHSRESGNPE 118 (506)
T ss_pred CHHHHHHHHHHHHHHH-cCC----CHHHHhCcCEEcCcEEEeCCCcccC--------CCcHHHHHHHHHHHhhhcccccc
Confidence 3344667788888743 454 999999998 999999999999999 599999999888654310 00
Q ss_pred ----cccccc----ccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecch
Q 019743 135 ----DIDWSA----AYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNA 205 (336)
Q Consensus 135 ----~i~~~g----~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~ 205 (336)
....++ .....+..+|||+|||||++++.+++..|+++++|+|+|+.|++.|++|++.+++. ++.++++|+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~ 198 (506)
T PRK01544 119 KKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNW 198 (506)
T ss_pred ccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecch
Confidence 001110 00011235899999999999999999999999999999999999999999988874 699999998
Q ss_pred hH-----HHHhhhcCCCCeEEEEEeeC-C-----CCCCCc-chhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHH
Q 019743 206 TS-----TFRSIVASYPGKLILVSIQC-P-----NPDFNR-PEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRM 273 (336)
Q Consensus 206 ~~-----~~d~ivsnpp~~~d~i~~~~-~-----dp~~~~-~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 273 (336)
.+ .||.++|||||......... + +|.... .......+++++++.+.++|+|||.++++++. .+.+.+
T Consensus 199 ~~~~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~-~q~~~v 277 (506)
T PRK01544 199 FENIEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF-KQEEAV 277 (506)
T ss_pred hhhCcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC-chHHHH
Confidence 64 48999999999643211110 0 111000 00112345789999999999999999999986 578899
Q ss_pred HHHHHHcCCcceeeecc
Q 019743 274 KQQFLEYGKGKLVLVQD 290 (336)
Q Consensus 274 ~~~l~~~g~~~~~~~~d 290 (336)
.+++.+.||..+.+.+|
T Consensus 278 ~~~~~~~g~~~~~~~~D 294 (506)
T PRK01544 278 TQIFLDHGYNIESVYKD 294 (506)
T ss_pred HHHHHhcCCCceEEEec
Confidence 99999999988877777
No 17
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.94 E-value=3.4e-26 Score=210.25 Aligned_cols=205 Identities=14% Similarity=0.127 Sum_probs=158.5
Q ss_pred CCchHHHHHHHHHHHhcCceEeccceeeeecc-CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCccccc
Q 019743 60 KGANDAASDLIQFARDKHITILYPKDFWCTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDW 138 (336)
Q Consensus 60 ~~~~~~a~~l~~~~~~~~~~i~~Pvd~~~~~~-~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~ 138 (336)
++..+..++++++.. .| .|++|++|.. |+|.+|.+.+.+.|| +|+|+.++..++.....
T Consensus 52 ~~~~~~~~~~~~~r~-~~----~pl~yi~g~~~f~g~~f~v~~~vliP--------r~ete~lv~~~l~~~~~------- 111 (284)
T TIGR00536 52 PDEKERIFRLVLRRV-KG----VPVAYLLGSKEFYGLEFFVNEHVLIP--------RPETEELVEKALASLIS------- 111 (284)
T ss_pred HHHHHHHHHHHHHHH-cC----CCHHHHhCcceEcCeEEEECCCCcCC--------CCccHHHHHHHHHHhhh-------
Confidence 334556677777743 34 4999999988 999999999999999 59999999988764220
Q ss_pred ccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhH-----HHHhh
Q 019743 139 SAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATS-----TFRSI 212 (336)
Q Consensus 139 ~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~-----~~d~i 212 (336)
.....+|||+|||||++++.+++..|+.+++|+|+|+++++.|++|++.++..+ +.++++|+.+ .||.+
T Consensus 112 -----~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlI 186 (284)
T TIGR00536 112 -----QNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDII 186 (284)
T ss_pred -----cCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEE
Confidence 111258999999999999999999999999999999999999999999988864 9999999864 48999
Q ss_pred hcCCCCeEEEEEeeCCCCCCCcch------hhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHH-HcCCcce
Q 019743 213 VASYPGKLILVSIQCPNPDFNRPE------HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFL-EYGKGKL 285 (336)
Q Consensus 213 vsnpp~~~d~i~~~~~dp~~~~~~------~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~-~~g~~~~ 285 (336)
++||||.........+......++ .....+++++++++.++|+|||.+++++++ ++.+.+.+++. ..+|..+
T Consensus 187 vsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~-~q~~~~~~~~~~~~~~~~~ 265 (284)
T TIGR00536 187 VSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN-WQQKSLKELLRIKFTWYDV 265 (284)
T ss_pred EECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc-cHHHHHHHHHHhcCCCcee
Confidence 999999743221111111111111 112236889999999999999999999986 56788888887 4688877
Q ss_pred eeecc
Q 019743 286 VLVQD 290 (336)
Q Consensus 286 ~~~~d 290 (336)
.+.+|
T Consensus 266 ~~~~D 270 (284)
T TIGR00536 266 ENGRD 270 (284)
T ss_pred EEecC
Confidence 78877
No 18
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.93 E-value=4e-25 Score=202.75 Aligned_cols=202 Identities=12% Similarity=0.150 Sum_probs=153.6
Q ss_pred ccCCchHHHHHHHHHHHhcCceEeccceeeeecc-CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCccc
Q 019743 58 VEKGANDAASDLIQFARDKHITILYPKDFWCTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDI 136 (336)
Q Consensus 58 ~~~~~~~~a~~l~~~~~~~~~~i~~Pvd~~~~~~-~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i 136 (336)
++++..+..++++++....++ |++|++|+. |+|.++.|.+.+.|| +|+|+..+...+.....
T Consensus 56 ~~~~~~~~~~~~~~rr~~~~~----Pl~yi~g~~~f~g~~f~v~~~vlip--------r~~te~lv~~~l~~~~~----- 118 (284)
T TIGR03533 56 LTPSEKERILELIERRIEERI----PVAYLTNEAWFAGLEFYVDERVLIP--------RSPIAELIEDGFAPWLE----- 118 (284)
T ss_pred CCHHHHHHHHHHHHHHHhCCC----cHHHHcCCCeecCcEEEECCCCccC--------CCchHHHHHHHHHHHhc-----
Confidence 334445667777777543444 999999998 999999999999898 59999999887753210
Q ss_pred ccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhH-----HHH
Q 019743 137 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATS-----TFR 210 (336)
Q Consensus 137 ~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~-----~~d 210 (336)
.....+|||+|||||++++.+++..|+.+++|+|+|+.+++.|++|++.+++. ++.++++|+.+ .||
T Consensus 119 -------~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD 191 (284)
T TIGR03533 119 -------PEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYD 191 (284)
T ss_pred -------cCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCcc
Confidence 01245899999999999999999999999999999999999999999998874 69999999853 489
Q ss_pred hhhcCCCCeEEEEEeeCCCCCCCcch------hhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcc
Q 019743 211 SIVASYPGKLILVSIQCPNPDFNRPE------HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 284 (336)
Q Consensus 211 ~ivsnpp~~~d~i~~~~~dp~~~~~~------~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~ 284 (336)
.+++||||.........+......++ .....+++.+++.+.++|+|||+++++++. ++ +.+.+.+.+++|..
T Consensus 192 ~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~-~~-~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 192 LIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN-SM-EALEEAYPDVPFTW 269 (284)
T ss_pred EEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-CH-HHHHHHHHhCCCce
Confidence 99999999633211111111100111 011235789999999999999999999986 44 68889999888764
Q ss_pred e
Q 019743 285 L 285 (336)
Q Consensus 285 ~ 285 (336)
.
T Consensus 270 ~ 270 (284)
T TIGR03533 270 L 270 (284)
T ss_pred e
Confidence 3
No 19
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.92 E-value=2.6e-24 Score=199.19 Aligned_cols=200 Identities=14% Similarity=0.185 Sum_probs=149.7
Q ss_pred chHHHHHHHHHHHhcCceEeccceeeeecc-CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCccccccc
Q 019743 62 ANDAASDLIQFARDKHITILYPKDFWCTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSA 140 (336)
Q Consensus 62 ~~~~a~~l~~~~~~~~~~i~~Pvd~~~~~~-~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g 140 (336)
..+...+++++....|+ |++||+|+. |+|.++.|.+.+.|| +|+|++.+...+.....
T Consensus 72 ~~~~~~~~~~rr~~~~~----Pl~yi~g~~~F~g~~f~v~~~vlip--------r~~te~lv~~~l~~~~~--------- 130 (307)
T PRK11805 72 EKARILELIERRINERI----PAAYLTNEAWFCGLEFYVDERVLVP--------RSPIAELIEDGFAPWLE--------- 130 (307)
T ss_pred HHHHHHHHHHHHHHCCc----cHHHHcCcceEcCcEEEECCCCcCC--------CCchHHHHHHHHHHHhc---------
Confidence 35566677777432355 999999998 999999999999998 59999998887653210
Q ss_pred ccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhH-----HHHhhhc
Q 019743 141 AYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATS-----TFRSIVA 214 (336)
Q Consensus 141 ~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~-----~~d~ivs 214 (336)
.....+|||+|||||++++.+++..|+.+++|+|+|+.+++.|++|++.+++. +++++++|+.+ .||.+++
T Consensus 131 ---~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvs 207 (307)
T PRK11805 131 ---DPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVS 207 (307)
T ss_pred ---cCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEE
Confidence 00125799999999999999999999999999999999999999999998875 59999999854 4899999
Q ss_pred CCCCeEEEEEeeCC-----CCCCCc-chhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743 215 SYPGKLILVSIQCP-----NPDFNR-PEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 287 (336)
Q Consensus 215 npp~~~d~i~~~~~-----dp~~~~-~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 287 (336)
||||.........+ +|.... .......+++.+++.+.++|+|||+++++++.. + +.+.+.+...++.....
T Consensus 208 NPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~-~~~~~~~~~~~~~~~~~ 284 (307)
T PRK11805 208 NPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-R-VHLEEAYPDVPFTWLEF 284 (307)
T ss_pred CCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-H-HHHHHHHhhCCCEEEEe
Confidence 99996422111111 111000 001112457899999999999999999999864 3 35888888777654433
No 20
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.92 E-value=4.3e-24 Score=210.05 Aligned_cols=168 Identities=18% Similarity=0.238 Sum_probs=143.2
Q ss_pred ccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhc
Q 019743 135 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA 214 (336)
Q Consensus 135 ~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivs 214 (336)
.+.+.+.|+. +.+.+||||||.|.+++.+|+.+|+.+++|+|++...+..|.+.+...+++|+.+++.|+... ...+
T Consensus 337 ~i~~eklf~~-~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~-~~~~- 413 (506)
T PRK01544 337 LFSKEKLVNE-KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLI-LNDL- 413 (506)
T ss_pred CCCHHHhCCC-CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHhc-
Confidence 3445555654 578999999999999999999999999999999999999999999999999999999887554 3335
Q ss_pred CCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcC-Ccceeeeccccc
Q 019743 215 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG-KGKLVLVQDECD 293 (336)
Q Consensus 215 npp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g-~~~~~~~~d~~~ 293 (336)
|+.+++.++++|||||+|++|+++|++.+.|++.+.+.|+|||.+++.||+.+|++++.+.+.+++ |... ..+.
T Consensus 414 -~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~f~~~--~~~~-- 488 (506)
T PRK01544 414 -PNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNGNFEII--NKND-- 488 (506)
T ss_pred -CcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCCCeEec--cccc--
Confidence 678899999999999999999999999999999999999999999999999999999999999887 5432 1121
Q ss_pred cccCCCCCCCCCCCCCCCHHHHHH
Q 019743 294 TKTNQGGWLGENSFGVRSDWEQHV 317 (336)
Q Consensus 294 ~~~~~~~~~~~~~~~~~t~~e~~~ 317 (336)
|....+..+.|+||+|.
T Consensus 489 -------~~~~~~~~~~T~yE~k~ 505 (506)
T PRK01544 489 -------YLKPHDNYVITKYHQKA 505 (506)
T ss_pred -------ccCCCCCCCCchhccCc
Confidence 23334678889999874
No 21
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.92 E-value=1.7e-23 Score=182.89 Aligned_cols=172 Identities=22% Similarity=0.392 Sum_probs=145.1
Q ss_pred ccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhc
Q 019743 135 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA 214 (336)
Q Consensus 135 ~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivs 214 (336)
++.|...|.. +..+|||+|||+|.++..+++..|..+++|+|+|++|++.|++++..++..|+.++++|+.+.++..+
T Consensus 30 ~~~~~~~~~~-~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~- 107 (202)
T PRK00121 30 PLDWAELFGN-DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMF- 107 (202)
T ss_pred CCCHHHHcCC-CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHc-
Confidence 5566666665 46899999999999999999999999999999999999999999998888899999999944334323
Q ss_pred CCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeecccccc
Q 019743 215 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDT 294 (336)
Q Consensus 215 npp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~ 294 (336)
++..+|.+++.+++||.+..++..+..++.+++++.++|+|||.+++.+++..+..++.+.+.++|+... .
T Consensus 108 -~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~--~------ 178 (202)
T PRK00121 108 -PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV--S------ 178 (202)
T ss_pred -CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc--c------
Confidence 5667899999999998776666666677899999999999999999999999999999999999998643 1
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHH
Q 019743 295 KTNQGGWLGENSFGVRSDWEQHVID 319 (336)
Q Consensus 295 ~~~~~~~~~~~~~~~~t~~e~~~~~ 319 (336)
..++|...++..+.|+||++|..
T Consensus 179 --~~~~~~~~~~~~~~~~~~~~~~~ 201 (202)
T PRK00121 179 --EAGDYVPRPEGRPMTEYERKGLR 201 (202)
T ss_pred --cchhhcccCccCCCcHHHHHhhc
Confidence 12457788899999999999974
No 22
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.91 E-value=1.3e-23 Score=189.33 Aligned_cols=197 Identities=14% Similarity=0.125 Sum_probs=148.1
Q ss_pred hHHHHHHHHHHHhcCceEeccceeeeecc-CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccc
Q 019743 63 NDAASDLIQFARDKHITILYPKDFWCTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAA 141 (336)
Q Consensus 63 ~~~a~~l~~~~~~~~~~i~~Pvd~~~~~~-~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~ 141 (336)
.+..++++++. ..++ |++||+|.. |+|.++.+.+.+.+| +++|+.+++.++.....
T Consensus 27 ~~~~~~~~~rr-~~~~----Pl~yi~g~~~f~g~~~~v~~~vf~p--------r~~Te~Lv~~~l~~~~~---------- 83 (251)
T TIGR03704 27 PGELAAMVDRR-VAGL----PLEHVLGWAEFCGLRIAVDPGVFVP--------RRRTEFLVDEAAALARP---------- 83 (251)
T ss_pred HHHHHHHHHHH-HcCC----CHHHhcccCeEcCeEEEECCCCcCC--------CccHHHHHHHHHHhhcc----------
Confidence 45667777773 3444 999999988 999999999988888 59999999888753221
Q ss_pred cCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH--------HHHhhh
Q 019743 142 YHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS--------TFRSIV 213 (336)
Q Consensus 142 ~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~--------~~d~iv 213 (336)
.....++||+|||||.+++.+++..|..+++|+|+|+.|++.|++|++.++ ++++++|+.+ .||.++
T Consensus 84 --~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~~~~~~fDlVv 158 (251)
T TIGR03704 84 --RSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPTALRGRVDILA 158 (251)
T ss_pred --cCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcchhcCCCEeEEE
Confidence 011358999999999999999999888999999999999999999998765 4678888753 378999
Q ss_pred cCCCCeEEEEEee-CCCCCCCcchh------hhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCccee
Q 019743 214 ASYPGKLILVSIQ-CPNPDFNRPEH------RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV 286 (336)
Q Consensus 214 snpp~~~d~i~~~-~~dp~~~~~~~------~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 286 (336)
+||||........ .++......+. ....+++++++.+.++|+|||+++++++. ++...+.+.+.++||....
T Consensus 159 ~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~-~~~~~v~~~l~~~g~~~~~ 237 (251)
T TIGR03704 159 ANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE-RQAPLAVEAFARAGLIARV 237 (251)
T ss_pred ECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-chHHHHHHHHHHCCCCcee
Confidence 9999964321111 11110000000 11234789999999999999999999986 4578899999999987654
Q ss_pred ee
Q 019743 287 LV 288 (336)
Q Consensus 287 ~~ 288 (336)
..
T Consensus 238 ~~ 239 (251)
T TIGR03704 238 AS 239 (251)
T ss_pred eE
Confidence 44
No 23
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.90 E-value=2e-23 Score=182.63 Aligned_cols=167 Identities=14% Similarity=0.128 Sum_probs=130.6
Q ss_pred eccceeeeecc-CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccH
Q 019743 81 LYPKDFWCTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGL 159 (336)
Q Consensus 81 ~~Pvd~~~~~~-~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~ 159 (336)
.+|+|||+|.. |.+......|++.|| +|||++.++.++...... . ..+...+||+|||||+
T Consensus 100 r~PlQYIlg~~~F~~l~l~~~pgVlIP--------RpETEE~V~~Vid~~~~~--------~--~~~~~~ildlgtGSGa 161 (328)
T KOG2904|consen 100 RMPLQYILGSQPFGDLDLVCKPGVLIP--------RPETEEWVEAVIDALNNS--------E--HSKHTHILDLGTGSGA 161 (328)
T ss_pred cCChhheeccCccCCceEEecCCeeec--------CccHHHHHHHHHHHHhhh--------h--hcccceEEEecCCccH
Confidence 57999999988 999999999999999 599999998887653310 0 0124579999999999
Q ss_pred HHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEE----ecchhH-------HHHhhhcCCCCeEEEEEeeC
Q 019743 160 FLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFI----ATNATS-------TFRSIVASYPGKLILVSIQC 227 (336)
Q Consensus 160 ~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~----~~d~~~-------~~d~ivsnpp~~~d~i~~~~ 227 (336)
+++.++...|+++++|+|.|+.|+..|.+|++++++.+ +.++ .+|+.. .+|.++|||||..+.- +.+
T Consensus 162 Islsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD-~~~ 240 (328)
T KOG2904|consen 162 ISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDD-NRQ 240 (328)
T ss_pred HHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCCCcccccc-hhh
Confidence 99999999999999999999999999999999998765 5554 334432 4789999999986543 333
Q ss_pred CCCCCCcchhhhhc--------chHHHHHHHHhcCcCCcEEEEEeCc
Q 019743 228 PNPDFNRPEHRWRM--------VQRSLVEAVSDLLVHDGKVFLQSDI 266 (336)
Q Consensus 228 ~dp~~~~~~~~~~l--------~~~~~l~~~~~~LkpgG~l~~~~~~ 266 (336)
..|.....+++.++ ++..++.-+.|.|+|||.+.++.+.
T Consensus 241 l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~ 287 (328)
T KOG2904|consen 241 LKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE 287 (328)
T ss_pred cCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecc
Confidence 44444333333232 3578899999999999999998873
No 24
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.89 E-value=2.2e-22 Score=184.09 Aligned_cols=201 Identities=15% Similarity=0.154 Sum_probs=153.6
Q ss_pred chHHHHHHHHHHHhcCceEeccceeeeecc-CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCccccccc
Q 019743 62 ANDAASDLIQFARDKHITILYPKDFWCTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSA 140 (336)
Q Consensus 62 ~~~~a~~l~~~~~~~~~~i~~Pvd~~~~~~-~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g 140 (336)
..+..++++++. ..+ .|++|++|.. |++..+.+.+.+.+| +|+|+..++.++....
T Consensus 49 ~~~~~~~~~~~~-~~~----~p~~~i~g~~~f~~~~~~~~~~~lip--------r~~te~l~~~~~~~~~---------- 105 (275)
T PRK09328 49 ELERFRALVARR-AAG----EPLQYILGEAEFWGLDFKVSPGVLIP--------RPETEELVEWALEALL---------- 105 (275)
T ss_pred HHHHHHHHHHHH-HcC----CCHHHHceeceEcCcEEEECCCceeC--------CCCcHHHHHHHHHhcc----------
Confidence 346667777774 334 4999999988 999999998888888 5999999887774321
Q ss_pred ccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH-----HHHhhhcC
Q 019743 141 AYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS-----TFRSIVAS 215 (336)
Q Consensus 141 ~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~-----~~d~ivsn 215 (336)
..+..+|||+|||+|++++.++...|..+++|+|+|+.+++.|++|+......++.++++|+.. .||.+++|
T Consensus 106 ---~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~n 182 (275)
T PRK09328 106 ---LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSN 182 (275)
T ss_pred ---ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEEC
Confidence 1125689999999999999999999999999999999999999999873334579999999864 48999999
Q ss_pred CCCeEEEEEeeCCCCCCCcchh--------hhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743 216 YPGKLILVSIQCPNPDFNRPEH--------RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 287 (336)
Q Consensus 216 pp~~~d~i~~~~~dp~~~~~~~--------~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 287 (336)
|||........ ..+......+ ....+++++++++.++|+|||.+++++++ .+.+.+.+++.+.||..+..
T Consensus 183 pPy~~~~~~~~-~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~-~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 183 PPYIPEADIHL-LQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY-DQGEAVRALLAAAGFADVET 260 (275)
T ss_pred CCcCCcchhhh-CCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc-hHHHHHHHHHHhCCCceeEE
Confidence 99963321110 1111110011 11234689999999999999999999987 56788999999999987777
Q ss_pred ecc
Q 019743 288 VQD 290 (336)
Q Consensus 288 ~~d 290 (336)
..|
T Consensus 261 ~~d 263 (275)
T PRK09328 261 RKD 263 (275)
T ss_pred ecC
Confidence 666
No 25
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.87 E-value=4.7e-21 Score=172.88 Aligned_cols=202 Identities=17% Similarity=0.203 Sum_probs=152.8
Q ss_pred CCchHHHHHHHHHHHhcCceEeccceeeeecc-CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCccccc
Q 019743 60 KGANDAASDLIQFARDKHITILYPKDFWCTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDW 138 (336)
Q Consensus 60 ~~~~~~a~~l~~~~~~~~~~i~~Pvd~~~~~~-~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~ 138 (336)
.+..+...+.+++..+ ..|++++.+.. |++.++.+.+.+.+| +|+|...+..++....
T Consensus 27 ~~~~~~~~~~~~~~~~-----~~pl~~~~~~~~~~~~~~~~~~~~~~p--------~~~~~~l~~~~l~~~~-------- 85 (251)
T TIGR03534 27 PEELARFEALLARRAK-----GEPVAYILGEREFYGLDFKVSPGVLIP--------RPDTEELVEAALERLK-------- 85 (251)
T ss_pred HHHHHHHHHHHHHHHc-----CCCHHHHcccceEeceEEEECCCcccC--------CCChHHHHHHHHHhcc--------
Confidence 3345666666666432 34999999987 999988887777677 5999988887776432
Q ss_pred ccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH-----HHHhhh
Q 019743 139 SAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS-----TFRSIV 213 (336)
Q Consensus 139 ~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~-----~~d~iv 213 (336)
.+..+|||+|||+|.++..+++..|..+++|+|+|+.+++.|++|+..+++.++.++++|+.+ .||.++
T Consensus 86 ------~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi 159 (251)
T TIGR03534 86 ------KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIV 159 (251)
T ss_pred ------cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEE
Confidence 124589999999999999999999999999999999999999999998888889999999854 378888
Q ss_pred cCCCCeEEEEEeeCCCCCCCcchh--------hhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcce
Q 019743 214 ASYPGKLILVSIQCPNPDFNRPEH--------RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 285 (336)
Q Consensus 214 snpp~~~d~i~~~~~dp~~~~~~~--------~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~ 285 (336)
+||||......... .+......+ .....+..+++.+.++|+|||.+++++++ .+.+.+.+.+.++||..+
T Consensus 160 ~npPy~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~-~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 160 SNPPYIPEADIHLL-DPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY-DQGEAVRALFEAAGFADV 237 (251)
T ss_pred ECCCCCchhhhhhc-ChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc-cHHHHHHHHHHhCCCCce
Confidence 99998532110000 000000000 01123578999999999999999999876 457888999999999988
Q ss_pred eeecc
Q 019743 286 VLVQD 290 (336)
Q Consensus 286 ~~~~d 290 (336)
.+.+|
T Consensus 238 ~~~~d 242 (251)
T TIGR03534 238 ETRKD 242 (251)
T ss_pred EEEeC
Confidence 88777
No 26
>PLN02672 methionine S-methyltransferase
Probab=99.86 E-value=3e-21 Score=200.64 Aligned_cols=181 Identities=17% Similarity=0.109 Sum_probs=140.0
Q ss_pred eecc-CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHH
Q 019743 88 CTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMAR 166 (336)
Q Consensus 88 ~~~~-~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~ 166 (336)
.|.. |+|.++.|.|.+.|| +|+|+.+++. +...+. ..+ ++.+|||+|||||++++.+++
T Consensus 79 ~G~~~F~~l~~~V~p~VLIP--------RpeTE~lve~-L~~~~~--------~~~---~~~~VLDlG~GSG~Iai~La~ 138 (1082)
T PLN02672 79 EGFRNRKKLTMMEIPSIFIP--------EDWSFTFYEG-LNRHPD--------SIF---RDKTVAELGCGNGWISIAIAE 138 (1082)
T ss_pred CCeEEecCCceeeCCCcccC--------chhHHHHHHH-HHhccc--------ccC---CCCEEEEEecchHHHHHHHHH
Confidence 4777 999999999999999 5999999987 543221 001 135799999999999999999
Q ss_pred hCCCCeEEEEecChHHHHHHHHHHHHhCC----------------CcEEEEecchhH-------HHHhhhcCCCCeEEEE
Q 019743 167 KRKDLNFLGLEVNGKLVTHCRDSLQLSGI----------------TNGYFIATNATS-------TFRSIVASYPGKLILV 223 (336)
Q Consensus 167 ~~p~~~v~giDis~~~l~~a~~n~~~~~~----------------~nv~~~~~d~~~-------~~d~ivsnpp~~~d~i 223 (336)
++|..+++|+|+|+.|++.|++|++.+++ .+++|+++|+.+ .||.|+|||||.....
T Consensus 139 ~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e 218 (1082)
T PLN02672 139 KWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPN 218 (1082)
T ss_pred HCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcc
Confidence 99989999999999999999999988643 369999999865 2799999999975421
Q ss_pred E-eeCC-----CCC-------CCcch------hhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHH-HHHHHcCCc
Q 019743 224 S-IQCP-----NPD-------FNRPE------HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMK-QQFLEYGKG 283 (336)
Q Consensus 224 ~-~~~~-----dp~-------~~~~~------~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~l~~~g~~ 283 (336)
. ...+ +|. +.... .....++++++.++.++|+|||++++|++. ++.+.+. +++++.||.
T Consensus 219 ~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~-~q~~~v~~~l~~~~gf~ 297 (1082)
T PLN02672 219 PEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGG-RPGQAVCERLFERRGFR 297 (1082)
T ss_pred hhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc-cHHHHHHHHHHHHCCCC
Confidence 1 1111 110 01111 223346899999999999999999999986 5688998 699999988
Q ss_pred ceeeec
Q 019743 284 KLVLVQ 289 (336)
Q Consensus 284 ~~~~~~ 289 (336)
....++
T Consensus 298 ~~~~~~ 303 (1082)
T PLN02672 298 ITKLWQ 303 (1082)
T ss_pred eeEEee
Confidence 766543
No 27
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.75 E-value=7.8e-18 Score=148.81 Aligned_cols=138 Identities=17% Similarity=0.244 Sum_probs=115.3
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhH--------HHHhhhcCCC
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATS--------TFRSIVASYP 217 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~--------~~d~ivsnpp 217 (336)
..+|||||||+|.+++.+|++.++++++|||++++|.+.|++|++.++++ ++++++.|+.+ .||.|++|||
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence 57899999999999999999988899999999999999999999998875 79999999975 2889999999
Q ss_pred CeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCccee
Q 019743 218 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLV 286 (336)
Q Consensus 218 ~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 286 (336)
|--.... ..+++.....+|...+..+.+++.+.++|||||.+++.... +...++.+.+.+++|....
T Consensus 125 yf~~~~~-~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~-erl~ei~~~l~~~~~~~k~ 191 (248)
T COG4123 125 YFKQGSR-LNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP-ERLAEIIELLKSYNLEPKR 191 (248)
T ss_pred CCCCccc-cCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH-HHHHHHHHHHHhcCCCceE
Confidence 9533222 34666655666666677899999999999999999997764 4566788888888876543
No 28
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.73 E-value=1.3e-17 Score=141.92 Aligned_cols=105 Identities=20% Similarity=0.344 Sum_probs=84.1
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH-----HHhhhcCCCCeEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST-----FRSIVASYPGKLI 221 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~-----~d~ivsnpp~~~d 221 (336)
..++||+|||+|.+++.+++..|+.+++++|+|+.+++.|++|++.+++++++++++|+.+. ||.|++|||.
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~--- 108 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPF--- 108 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---S---
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccch---
Confidence 56899999999999999999999999999999999999999999999988899999998652 5555555552
Q ss_pred EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743 222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 265 (336)
Q Consensus 222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~ 265 (336)
...........+++++++.++|+|||.+++...
T Consensus 109 -----------~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 109 -----------HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp -----------BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -----------hcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 111111223568999999999999999987553
No 29
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=99.68 E-value=1.7e-16 Score=133.40 Aligned_cols=188 Identities=22% Similarity=0.373 Sum_probs=147.3
Q ss_pred ccccccccCC-----CCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC-------CCcEEEEe
Q 019743 135 DIDWSAAYHD-----PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-------ITNGYFIA 202 (336)
Q Consensus 135 ~i~~~g~~~~-----~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~-------~~nv~~~~ 202 (336)
-++|+..|+. ++..-+.|||||-|.+.+.|+..+|+..++|.||....-+..+++++..+ ..|+.+++
T Consensus 44 ~mDWS~~yp~f~~~~~~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr 123 (249)
T KOG3115|consen 44 EMDWSKYYPDFRRALNKKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLR 123 (249)
T ss_pred hCcHHHhhhhhhhhccccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeee
Confidence 4555554432 12467999999999999999999999999999999999999988887665 57889999
Q ss_pred cchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCC
Q 019743 203 TNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGK 282 (336)
Q Consensus 203 ~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~ 282 (336)
.++...+..+++ -+.++.+++.||||+++.+.|+.|++...++.+..-+|++||.++..+|+....+++...+++++.
T Consensus 124 ~namk~lpn~f~--kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e~hpl 201 (249)
T KOG3115|consen 124 TNAMKFLPNFFE--KGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLEEHPL 201 (249)
T ss_pred ccchhhccchhh--hcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHHhCcH
Confidence 999887666663 566778889999999999999999999999999999999999999999999999999999999985
Q ss_pred ccee----eeccccccccCCCCCCCCCCCCCCCHHHHHHHHcCCCeEEEEEEeCCCC
Q 019743 283 GKLV----LVQDECDTKTNQGGWLGENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCV 335 (336)
Q Consensus 283 ~~~~----~~~d~~~~~~~~~~~~~~~~~~~~t~~e~~~~~~G~~i~~~~~~~~~~~ 335 (336)
.... +..|.+ . ......|+.-.+...+|...+..+|+++...
T Consensus 202 fe~lt~ee~~~d~~----------v-~~~~~~teeg~kv~r~~g~~f~a~f~r~~~~ 247 (249)
T KOG3115|consen 202 FERLTEEEEENDPC----------V-ELLSNATEEGKKVARNGGKKFVAVFRRIPNP 247 (249)
T ss_pred hhhcchhhhcCCcc----------h-hhhhhhhhhcccccccCCceeeeeeeeccCC
Confidence 5321 122211 0 0112234555566667777788888887654
No 30
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.67 E-value=3.5e-15 Score=129.82 Aligned_cols=120 Identities=16% Similarity=0.205 Sum_probs=93.3
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
+.+|||+|||+|.+++.+++..|+.+++|+|+|+.+++.|++|+++++..+++++.+|+.+.++.+.+++ +.+++.
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~----d~v~~~ 116 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP----DRVCIE 116 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC----CEEEEE
Confidence 5789999999999999999888889999999999999999999999888889999999876544433222 333332
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCC
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGK 282 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~ 282 (336)
... ....+++++.+.|+|||++++.+...+......+.+.+.+.
T Consensus 117 ~~~------------~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~ 160 (196)
T PRK07402 117 GGR------------PIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQA 160 (196)
T ss_pred CCc------------CHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCC
Confidence 111 23588999999999999999977655555556666665543
No 31
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.67 E-value=8.8e-16 Score=131.67 Aligned_cols=137 Identities=18% Similarity=0.201 Sum_probs=100.0
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH----HHHhhhcCCCCeEEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS----TFRSIVASYPGKLIL 222 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~----~~d~ivsnpp~~~d~ 222 (336)
..+|||+|||+|.++..+++..+ +++|+|+|+.|++.|++|++.++. +++++++|+.+ .||.+++|||+....
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGVRGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEcccccccCCcccEEEECCCCCCCc
Confidence 46799999999999999998865 899999999999999999988775 68899999753 478888888873110
Q ss_pred EEeeCCCCCCCcch---hhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743 223 VSIQCPNPDFNRPE---HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 287 (336)
Q Consensus 223 i~~~~~dp~~~~~~---~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 287 (336)
.... .+++..... ...+..++++++++.++|+|||.+++..........+.+.+.+.||....+
T Consensus 97 ~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 97 DDLR-RGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred chhc-ccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEE
Confidence 0000 011100000 011234678999999999999999986655444678888999999875543
No 32
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.66 E-value=6.9e-16 Score=136.44 Aligned_cols=103 Identities=17% Similarity=0.277 Sum_probs=88.4
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
+.+|||+|||||.+++.+++..+.++++|+|+|+.|++.|++++...+..+++|+++|+.++ +.|+.++|.+.+.
T Consensus 52 g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L-----Pf~D~sFD~vt~~ 126 (238)
T COG2226 52 GDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL-----PFPDNSFDAVTIS 126 (238)
T ss_pred CCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC-----CCCCCccCEEEee
Confidence 67999999999999999999998999999999999999999999988877899999999875 3378889988776
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
|.--... ..++.+++++|+|||||++.+
T Consensus 127 fglrnv~--------d~~~aL~E~~RVlKpgG~~~v 154 (238)
T COG2226 127 FGLRNVT--------DIDKALKEMYRVLKPGGRLLV 154 (238)
T ss_pred ehhhcCC--------CHHHHHHHHHHhhcCCeEEEE
Confidence 5322211 235899999999999998887
No 33
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.65 E-value=4.2e-15 Score=128.35 Aligned_cols=123 Identities=19% Similarity=0.192 Sum_probs=98.1
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
..+|||+|||+|.+++.+++.+|+.+++++|+|+.+++.|++|++.+++.+++++.+|+... + +..+|.+++.
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~----~---~~~~D~v~~~ 104 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE----L---PGKADAIFIG 104 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh----c---CcCCCEEEEC
Confidence 56899999999999999999999999999999999999999999988888899999987432 1 2345666654
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 287 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 287 (336)
.... ....+++.+.+.|+|||++++..-.......+.+.+++.||..++.
T Consensus 105 ~~~~-----------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 105 GSGG-----------NLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred CCcc-----------CHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceE
Confidence 2211 2357889999999999999986533455677888999999976554
No 34
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.64 E-value=1.7e-14 Score=121.40 Aligned_cols=121 Identities=15% Similarity=0.159 Sum_probs=103.4
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
++.+++|||||||.+++.+|...|..+++++|.++++++..++|+++.+.+|+.++.+++.+.+ ++.| .+|.+++
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L----~~~~-~~daiFI 108 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEAL----PDLP-SPDAIFI 108 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhh----cCCC-CCCEEEE
Confidence 4679999999999999999988999999999999999999999999999999999999998754 3334 6788887
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCc
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 283 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~ 283 (336)
.-. .-.+.+++.+...|+|||++++..-..+......+.+++.|+.
T Consensus 109 GGg------------~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ 154 (187)
T COG2242 109 GGG------------GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR 154 (187)
T ss_pred CCC------------CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc
Confidence 632 1346999999999999999999665556666778888999983
No 35
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.63 E-value=1.4e-15 Score=143.66 Aligned_cols=115 Identities=17% Similarity=0.256 Sum_probs=89.0
Q ss_pred CeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC---CcEEEEecchhH-----HHHhhhcCCCCe
Q 019743 148 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI---TNGYFIATNATS-----TFRSIVASYPGK 219 (336)
Q Consensus 148 ~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~---~nv~~~~~d~~~-----~~d~ivsnpp~~ 219 (336)
.+|||+|||+|.+++.+++++|+.+++++|+|+.|++.|++|++.++. .+++++.+|... .||.|++||||.
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsNPPfh 309 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPFH 309 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEECcCcc
Confidence 589999999999999999999999999999999999999999988764 368999888753 478888888874
Q ss_pred EEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc-HHHHHHHHHH
Q 019743 220 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQ 276 (336)
Q Consensus 220 ~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~~ 276 (336)
.... + . .....++++.++++|+|||.+++.... .+|...+.+.
T Consensus 310 ~~~~-~--~-----------~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~ 353 (378)
T PRK15001 310 QQHA-L--T-----------DNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKI 353 (378)
T ss_pred cCcc-C--C-----------HHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHH
Confidence 2110 0 0 012358999999999999999997532 3444444443
No 36
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.63 E-value=8.7e-15 Score=125.97 Aligned_cols=122 Identities=20% Similarity=0.181 Sum_probs=99.0
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
+.+|||+|||+|.+++.+|+..|.++|+|+|+|+.|++.|+++++.++.++++++++|+.+. . ++..+|.++..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~-~-----~~~~fDlV~~~ 119 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEF-G-----QEEKFDVVTSR 119 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhC-C-----CCCCccEEEEc
Confidence 57899999999999999999899999999999999999999999999988899999998763 1 12345666654
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 287 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 287 (336)
.- ...+.+++.+++.|+|||.+++.... .+...+.+..+.+|+....+
T Consensus 120 ~~------------~~~~~~l~~~~~~LkpGG~lv~~~~~-~~~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 120 AV------------ASLSDLVELCLPLLKPGGRFLALKGR-DPEEEIAELPKALGGKVEEV 167 (187)
T ss_pred cc------------cCHHHHHHHHHHhcCCCeEEEEEeCC-ChHHHHHHHHHhcCceEeee
Confidence 21 12358999999999999999997654 55677778888889875443
No 37
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=2.3e-15 Score=135.81 Aligned_cols=117 Identities=21% Similarity=0.330 Sum_probs=92.6
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH----HHHhhhcCCCCeEEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS----TFRSIVASYPGKLIL 222 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~----~~d~ivsnpp~~~d~ 222 (336)
..+|||+|||.|.+++.+|+..|+.+++.+|+|..+++.|++|+..|+.++..++.+|..+ .||.|+||||..-..
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd~IisNPPfh~G~ 238 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFDLIISNPPFHAGK 238 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccccEEEeCCCccCCc
Confidence 3589999999999999999999999999999999999999999999999887677777654 589999999973111
Q ss_pred EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC-cHHHHHHHHHHH
Q 019743 223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-IEEVMLRMKQQF 277 (336)
Q Consensus 223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~l 277 (336)
-.. .-...++++.+.++|++||.+++... ...|...+.+.|
T Consensus 239 ~v~--------------~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~F 280 (300)
T COG2813 239 AVV--------------HSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELF 280 (300)
T ss_pred chh--------------HHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhc
Confidence 000 01335999999999999999999553 344555555544
No 38
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.61 E-value=5.1e-15 Score=116.62 Aligned_cols=108 Identities=18% Similarity=0.287 Sum_probs=82.0
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
+.+|||||||+|.+++.+++.+|..+++|+|+|+.+++.|++++...+. .+++++++|+ .. +. + .+..+|.++.
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~-~~--~-~~~~~D~v~~ 76 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EF-DP--D-FLEPFDLVIC 76 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HG-GT--T-TSSCEEEEEE
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-cc-Cc--c-cCCCCCEEEE
Confidence 5789999999999999999988899999999999999999999966554 6899999999 21 11 1 1233677666
Q ss_pred eC-CCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743 226 QC-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 226 ~~-~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~ 264 (336)
.. ...+. .+. ...+++++.+.+.|+|||++++.+
T Consensus 77 ~~~~~~~~--~~~---~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHFL--LPL---DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp CSGSGGGC--CHH---HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccc--cch---hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 53 11110 000 123578999999999999999864
No 39
>PRK14967 putative methyltransferase; Provisional
Probab=99.59 E-value=3.4e-14 Score=126.17 Aligned_cols=136 Identities=18% Similarity=0.169 Sum_probs=95.4
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH-----HHHhhhcCCCCeEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS-----TFRSIVASYPGKLI 221 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~-----~~d~ivsnpp~~~d 221 (336)
+.+|||+|||+|.+++.+++.. ..+++|+|+|+.+++.|++|+..++. ++.++++|+.. .||.+++||||...
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~~~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARAVEFRPFDVVVSNPPYVPA 114 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhhccCCCeeEEEECCCCCCC
Confidence 5689999999999999999863 45899999999999999999988776 58888888854 36777777777422
Q ss_pred EEEeeCCCCCCC---cchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcce
Q 019743 222 LVSIQCPNPDFN---RPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 285 (336)
Q Consensus 222 ~i~~~~~dp~~~---~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~ 285 (336)
.... .++..+. ............+++++.++|+|||++++..........+.+.+.+.+|...
T Consensus 115 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~ 180 (223)
T PRK14967 115 PPDA-PPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAE 180 (223)
T ss_pred Cccc-ccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeE
Confidence 1000 0000000 0001112235789999999999999999855433335567778888888643
No 40
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.59 E-value=2.3e-14 Score=122.92 Aligned_cols=120 Identities=22% Similarity=0.211 Sum_probs=92.8
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
+.+|||+|||+|.+++.+|...|+.+|+|+|+|+.|++.+++++++++.+|++++++|+.+. . +...+|.++..
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~----~--~~~~fD~I~s~ 116 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF----Q--HEEQFDVITSR 116 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc----c--ccCCccEEEeh
Confidence 56899999999999999998888999999999999999999999999888899999998763 1 23356766554
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHH---cCCcce
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE---YGKGKL 285 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~---~g~~~~ 285 (336)
. . ...+.+++.+.++|+|||.+++..+... ...+....+. .|+..+
T Consensus 117 ~---~---------~~~~~~~~~~~~~LkpgG~lvi~~~~~~-~~~~~~~~e~~~~~~~~~~ 165 (181)
T TIGR00138 117 A---L---------ASLNVLLELTLNLLKVGGYFLAYKGKKY-LDEIEEAKRKCQVLGVEPL 165 (181)
T ss_pred h---h---------hCHHHHHHHHHHhcCCCCEEEEEcCCCc-HHHHHHHHHhhhhcCceEe
Confidence 2 1 1235788899999999999999776433 3444444443 677654
No 41
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.57 E-value=9.4e-15 Score=130.13 Aligned_cols=103 Identities=17% Similarity=0.265 Sum_probs=75.2
Q ss_pred CCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 147 QPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
+.+|||+|||||.++..+++. .|+.+++|+|+|++|++.|++++...+..|++++++|+.+. +-|+.++|.+.+
T Consensus 48 g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~l-----p~~d~sfD~v~~ 122 (233)
T PF01209_consen 48 GDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDL-----PFPDNSFDAVTC 122 (233)
T ss_dssp --EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB-------S-TT-EEEEEE
T ss_pred CCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHh-----cCCCCceeEEEH
Confidence 569999999999999999987 46789999999999999999999988888999999999764 226778998887
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
.|.-... ....+.+++++|+|||||++.+
T Consensus 123 ~fglrn~--------~d~~~~l~E~~RVLkPGG~l~i 151 (233)
T PF01209_consen 123 SFGLRNF--------PDRERALREMYRVLKPGGRLVI 151 (233)
T ss_dssp ES-GGG---------SSHHHHHHHHHHHEEEEEEEEE
T ss_pred HhhHHhh--------CCHHHHHHHHHHHcCCCeEEEE
Confidence 6532111 1235889999999999999887
No 42
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=6.3e-14 Score=123.09 Aligned_cols=124 Identities=21% Similarity=0.248 Sum_probs=110.4
Q ss_pred CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCCCeEEEE
Q 019743 146 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILV 223 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp~~~d~i 223 (336)
.+.+|+|.|+|||.++..||.. .|..+++..|+.++.++.|++|++..++.| +.+..+|+.+. +. +..+|.+
T Consensus 94 pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~---~~---~~~vDav 167 (256)
T COG2519 94 PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREG---ID---EEDVDAV 167 (256)
T ss_pred CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccc---cc---ccccCEE
Confidence 3689999999999999999975 688999999999999999999999999876 99999998764 22 2267999
Q ss_pred EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeee
Q 019743 224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLV 288 (336)
Q Consensus 224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 288 (336)
++.+|+|| ..++.+.+.|+|||.+.+-+..-+|.+...+.+++.||..+++.
T Consensus 168 ~LDmp~PW-------------~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~~ 219 (256)
T COG2519 168 FLDLPDPW-------------NVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEAV 219 (256)
T ss_pred EEcCCChH-------------HHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhhh
Confidence 99999999 89999999999999999988888999999999999999877654
No 43
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.56 E-value=6.2e-14 Score=116.93 Aligned_cols=109 Identities=15% Similarity=0.294 Sum_probs=85.6
Q ss_pred CCCeEEEEeccccHHHHHHH-HhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743 146 AQPLVVDIGSGNGLFLLGMA-RKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la-~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
++.+|||+|||+|.++..++ +.+|..+++|+|+|++|++.|++++++.+.+|++|.++|+.+ ++..+ +..+|.++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~---~~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQEL---EEKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCS---STTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhc-ccccc---CCCeeEEE
Confidence 36789999999999999999 557899999999999999999999999999999999999977 33211 14678776
Q ss_pred eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743 225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 266 (336)
Q Consensus 225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~ 266 (336)
......+. -....+++.+.+.|+++|.+++....
T Consensus 79 ~~~~l~~~--------~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHHF--------PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGGT--------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhhc--------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 65322111 11247899999999999999985543
No 44
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.55 E-value=2.5e-13 Score=118.42 Aligned_cols=122 Identities=14% Similarity=0.203 Sum_probs=96.8
Q ss_pred CCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhC-CCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~-~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
+.+|||+|||+|.+++.+|+.. +..+++++|+++.+++.|++|++.++ ..++.++.+|+.+.++. .+..+|.++
T Consensus 41 ~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~----~~~~~D~V~ 116 (198)
T PRK00377 41 GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT----INEKFDRIF 116 (198)
T ss_pred cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh----cCCCCCEEE
Confidence 5789999999999999998864 66899999999999999999999988 46899999998764322 123467766
Q ss_pred eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCc
Q 019743 225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 283 (336)
Q Consensus 225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~ 283 (336)
+..... ....+++.+.+.|+|||++++.....+....+.+.+++.||.
T Consensus 117 ~~~~~~-----------~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~ 164 (198)
T PRK00377 117 IGGGSE-----------KLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFN 164 (198)
T ss_pred ECCCcc-----------cHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCC
Confidence 642111 235889999999999999998665556677888889899984
No 45
>PRK14968 putative methyltransferase; Provisional
Probab=99.55 E-value=5.6e-14 Score=120.97 Aligned_cols=139 Identities=17% Similarity=0.194 Sum_probs=98.3
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc--EEEEecchhH-----HHHhhhcCCCCe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN--GYFIATNATS-----TFRSIVASYPGK 219 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n--v~~~~~d~~~-----~~d~ivsnpp~~ 219 (336)
+.++||+|||+|.++..++++ ..+++|+|+|+.+++.+++++..++..+ +.++++|+.+ .||.+++||||.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~~ 101 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPYL 101 (188)
T ss_pred CCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCcC
Confidence 568999999999999999988 6899999999999999999998888765 8888988755 256666666653
Q ss_pred EEEEEeeCCCCCCCcch---hhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeee
Q 019743 220 LILVSIQCPNPDFNRPE---HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLV 288 (336)
Q Consensus 220 ~d~i~~~~~dp~~~~~~---~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 288 (336)
...-...+ .++..... .........+++++.++|+|||.+++........+.+.+.+.+.||......
T Consensus 102 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 102 PTEEEEEW-DDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred CCCchhhh-hhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeee
Confidence 21000000 00000000 0012235689999999999999998865543345678889999999765443
No 46
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.54 E-value=1.1e-13 Score=136.42 Aligned_cols=137 Identities=12% Similarity=0.080 Sum_probs=99.1
Q ss_pred cee----eeecc-CCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEecccc
Q 019743 84 KDF----WCTKI-HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNG 158 (336)
Q Consensus 84 vd~----~~~~~-~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG 158 (336)
++| +++.+ |+|..+.+.+.+ .+|+..++...- .++.+|||||||+|
T Consensus 228 ~~y~~~~i~~~~~f~g~~~~v~~~v------------~~te~l~~~~~~-----------------~~~~~vLDiGcG~G 278 (475)
T PLN02336 228 VQYKSSGILRYERVFGEGFVSTGGL------------ETTKEFVDKLDL-----------------KPGQKVLDVGCGIG 278 (475)
T ss_pred hccccccHHHHHHHhCCCCCCCchH------------HHHHHHHHhcCC-----------------CCCCEEEEEeccCC
Confidence 677 89988 999988776443 245555443210 12568999999999
Q ss_pred HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhh
Q 019743 159 LFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHR 238 (336)
Q Consensus 159 ~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~ 238 (336)
++++.+++.. +++++|+|+|+.|++.|++|+...+ .++.|.++|+... .+ |+..+|.++....-.+..
T Consensus 279 ~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~---~~--~~~~fD~I~s~~~l~h~~----- 346 (475)
T PLN02336 279 GGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKK---TY--PDNSFDVIYSRDTILHIQ----- 346 (475)
T ss_pred HHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccC---CC--CCCCEEEEEECCcccccC-----
Confidence 9999999876 7899999999999999998875332 4699999998652 12 445678766532211110
Q ss_pred hhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743 239 WRMVQRSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 239 ~~l~~~~~l~~~~~~LkpgG~l~~~~ 264 (336)
...+++++++++|+|||++++..
T Consensus 347 ---d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 347 ---DKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred ---CHHHHHHHHHHHcCCCeEEEEEE
Confidence 12489999999999999999853
No 47
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.53 E-value=1.6e-13 Score=122.27 Aligned_cols=105 Identities=14% Similarity=0.186 Sum_probs=83.7
Q ss_pred CCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
+.+|||+|||+|.++..+++.. |..+++|+|+|+.+++.|+++....+.+++.++++|+... ..|+..+|.+++
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~V~~ 120 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL-----PFDDNSFDYVTI 120 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC-----CCCCCCccEEEE
Confidence 5789999999999999999885 6789999999999999999999887788899999998653 114456777766
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~ 264 (336)
.+.-.+. ....++++++.++|+|||++++..
T Consensus 121 ~~~l~~~--------~~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 121 GFGLRNV--------PDYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred ecccccC--------CCHHHHHHHHHHHcCcCeEEEEEE
Confidence 5432221 123488999999999999998744
No 48
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.52 E-value=3.2e-13 Score=122.68 Aligned_cols=104 Identities=15% Similarity=0.150 Sum_probs=80.6
Q ss_pred CCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHH---hCCCcEEEEecchhHHHHhhhcCCCCeEEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQL---SGITNGYFIATNATSTFRSIVASYPGKLIL 222 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~---~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~ 222 (336)
+.+|||+|||+|.++..+++.. |..+++|+|+|++|++.|+++... ....+++++++|+.+. +.|+.++|.
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-----p~~~~sfD~ 148 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-----PFDDCYFDA 148 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-----CCCCCCEeE
Confidence 5689999999999999999874 678999999999999999887542 2346899999998653 225567888
Q ss_pred EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743 223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 263 (336)
Q Consensus 223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~ 263 (336)
+++.+.-.+.. ...++++++.++|||||++++.
T Consensus 149 V~~~~~l~~~~--------d~~~~l~ei~rvLkpGG~l~i~ 181 (261)
T PLN02233 149 ITMGYGLRNVV--------DRLKAMQEMYRVLKPGSRVSIL 181 (261)
T ss_pred EEEecccccCC--------CHHHHHHHHHHHcCcCcEEEEE
Confidence 77654322211 1248999999999999999884
No 49
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.52 E-value=1.8e-13 Score=108.65 Aligned_cols=114 Identities=23% Similarity=0.308 Sum_probs=83.1
Q ss_pred CeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 148 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 148 ~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
.+|||+|||+|.+++.+++.. ..+++|+|+++.+++.|++|+...+. .+++++++|+.+... .+ ++..+|.++.+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-~~--~~~~~D~Iv~n 77 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE-PL--PDGKFDLIVTN 77 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH-TC--TTT-EEEEEE-
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh-hc--cCceeEEEEEC
Confidence 479999999999999999997 79999999999999999999999887 579999999876411 11 33445555444
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 265 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~ 265 (336)
.|..............+..+++.+.+.|+|||.+++.+.
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 322211111111223567999999999999999998653
No 50
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.51 E-value=2e-13 Score=123.33 Aligned_cols=118 Identities=20% Similarity=0.307 Sum_probs=88.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
+.+|||+|||+|.+++.+++..+ .+++|+|+|+.|++.|++|++.+++ .++.+..+|. .||.++ .
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~--~fD~Vv-----------a 185 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL--KADVIV-----------A 185 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC--CcCEEE-----------E
Confidence 57899999999999998877643 4699999999999999999998887 3455544432 233333 3
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeec
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQ 289 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 289 (336)
+... .....+++++.++|+|||.+++..-.....+.+.+.+.++||.......
T Consensus 186 ni~~-----------~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 186 NILA-----------NPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred cCcH-----------HHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEE
Confidence 2110 1235788999999999999999654556677888999999998765543
No 51
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.51 E-value=1.9e-13 Score=109.24 Aligned_cols=103 Identities=18% Similarity=0.225 Sum_probs=82.8
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
..++||+|||+|.++..++++.|+.+++|+|+|+.+++.|+++++.++..++.++.+|+....+. .+..+|.+++.
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~D~v~~~ 95 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED----SLPEPDRVFIG 95 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh----hcCCCCEEEEC
Confidence 46899999999999999999998899999999999999999999988888899999887642111 12346766654
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~ 264 (336)
.+.. ...++++.+.+.|+|||++++..
T Consensus 96 ~~~~-----------~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 96 GSGG-----------LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred Ccch-----------hHHHHHHHHHHHcCCCCEEEEEe
Confidence 3211 23589999999999999999853
No 52
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.51 E-value=2.8e-13 Score=120.93 Aligned_cols=126 Identities=16% Similarity=0.201 Sum_probs=105.6
Q ss_pred CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhH-HHHhhhcCCCCeEEE
Q 019743 146 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATS-TFRSIVASYPGKLIL 222 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~-~~d~ivsnpp~~~d~ 222 (336)
.+.+|||-|+|||.++.+||+. .|..+|+..|+.++.++.|++|++.+++. |+.+.+.|+.+ -|+.-+ ...+|.
T Consensus 40 pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~---~~~~Da 116 (247)
T PF08704_consen 40 PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL---ESDFDA 116 (247)
T ss_dssp TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT----TTSEEE
T ss_pred CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc---cCcccE
Confidence 3789999999999999999986 68999999999999999999999999985 79999999853 342211 346899
Q ss_pred EEeeCCCCCCCcchhhhhcchHHHHHHHHhcC-cCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743 223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLL-VHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 287 (336)
Q Consensus 223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~L-kpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 287 (336)
+++..|+|| ..+..+.+.| ++||++.+-+..-+|...+.+.|.++||..+++
T Consensus 117 vfLDlp~Pw-------------~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~~ 169 (247)
T PF08704_consen 117 VFLDLPDPW-------------EAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIET 169 (247)
T ss_dssp EEEESSSGG-------------GGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEEE
T ss_pred EEEeCCCHH-------------HHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeEE
Confidence 999999999 7788899999 899999999988899999999999999987654
No 53
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.50 E-value=3.2e-13 Score=117.28 Aligned_cols=146 Identities=13% Similarity=0.094 Sum_probs=98.4
Q ss_pred eeeeccCCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHH
Q 019743 86 FWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMA 165 (336)
Q Consensus 86 ~~~~~~~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la 165 (336)
+|++-.|+|.++.+.+.. ..+|.|...++.++..... ..++.+|||+|||||.+++.++
T Consensus 14 rIi~g~~~g~~l~~~~~~---------~~Rp~~d~v~e~l~~~l~~------------~~~~~~vLDl~~GsG~l~l~~l 72 (199)
T PRK10909 14 RIIGGQWRGRKLPVPDSP---------GLRPTTDRVRETLFNWLAP------------VIVDARCLDCFAGSGALGLEAL 72 (199)
T ss_pred EEEeeccCCCEeCCCCCC---------CcCcCCHHHHHHHHHHHhh------------hcCCCEEEEcCCCccHHHHHHH
Confidence 567645888877653211 1268888877666553210 0124689999999999999765
Q ss_pred HhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHH
Q 019743 166 RKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRS 245 (336)
Q Consensus 166 ~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~ 245 (336)
.+. ..+++++|+++.+++.|++|++.++.+++.++++|+.+.+.. +...+|.++++-| + .. -..+.
T Consensus 73 sr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~----~~~~fDlV~~DPP--y-~~------g~~~~ 138 (199)
T PRK10909 73 SRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ----PGTPHNVVFVDPP--F-RK------GLLEE 138 (199)
T ss_pred HcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh----cCCCceEEEECCC--C-CC------ChHHH
Confidence 554 468999999999999999999999988999999998763211 1223454443321 1 11 12345
Q ss_pred HHHHHHh--cCcCCcEEEEEeCc
Q 019743 246 LVEAVSD--LLVHDGKVFLQSDI 266 (336)
Q Consensus 246 ~l~~~~~--~LkpgG~l~~~~~~ 266 (336)
.++.+.. +|+|+|.+++++..
T Consensus 139 ~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 139 TINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred HHHHHHHCCCcCCCcEEEEEecC
Confidence 5555554 48999999998754
No 54
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.49 E-value=1.4e-13 Score=129.27 Aligned_cols=115 Identities=18% Similarity=0.241 Sum_probs=86.7
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH----HHHhhhcCCCCeEEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS----TFRSIVASYPGKLIL 222 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~----~~d~ivsnpp~~~d~ 222 (336)
..+|||+|||+|.+++.++++.|+.+++++|+|+.|++.|++|++.+++. .+++.+|... .||.|++|||+.-.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~~~~~~~fDlIvsNPPFH~g- 274 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE-GEVFASNVFSDIKGRFDMIISNPPFHDG- 274 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEcccccccCCCccEEEECCCccCC-
Confidence 35799999999999999999999999999999999999999999988864 4667777643 47777777776210
Q ss_pred EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC-cHHHHHHHHHH
Q 019743 223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-IEEVMLRMKQQ 276 (336)
Q Consensus 223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~ 276 (336)
.+ ......+++++++.++|+|||.+++... ...|...+.+.
T Consensus 275 -----~~--------~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~ 316 (342)
T PRK09489 275 -----IQ--------TSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDET 316 (342)
T ss_pred -----cc--------ccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHH
Confidence 00 0011346899999999999999988553 23444444433
No 55
>PRK04266 fibrillarin; Provisional
Probab=99.48 E-value=6.4e-13 Score=117.80 Aligned_cols=129 Identities=14% Similarity=0.134 Sum_probs=94.2
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
++.+|||+|||+|.++..+++..+..+|+|+|+++.|++.+.++++.. .|+.++.+|+.... .... .+..+|.++.
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~-~~~~-l~~~~D~i~~ 147 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPE-RYAH-VVEKVDVIYQ 147 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcc-hhhh-ccccCCEEEE
Confidence 357999999999999999999887779999999999999888887643 68999999986420 0000 1234787776
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE-----eCc----HHHHHHHHHHHHHcCCcceeee
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ-----SDI----EEVMLRMKQQFLEYGKGKLVLV 288 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~-----~~~----~~~~~~~~~~l~~~g~~~~~~~ 288 (336)
.+++|+ ....+++++.++|||||++++. .++ ....+...+.+++.||......
T Consensus 148 d~~~p~----------~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~ 209 (226)
T PRK04266 148 DVAQPN----------QAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVV 209 (226)
T ss_pred CCCChh----------HHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 666654 1235689999999999999983 222 1223345688888999876443
No 56
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.47 E-value=7.4e-13 Score=119.40 Aligned_cols=104 Identities=13% Similarity=0.223 Sum_probs=78.4
Q ss_pred CCeEEEEeccccHHHHHHHHh--CCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILV 223 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~--~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i 223 (336)
+.+|||||||+|..+..+++. .|+.+++|+|+|+.|++.|++++..++.. ++.++++|+.+. .+ ++ .|.+
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~---~~--~~--~D~v 129 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI---AI--EN--ASMV 129 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC---CC--CC--CCEE
Confidence 578999999999999999884 58999999999999999999999887654 799999998653 11 22 3444
Q ss_pred EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743 224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 263 (336)
Q Consensus 224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~ 263 (336)
+..+.-.+.. ......+++++++.|||||.+++.
T Consensus 130 v~~~~l~~l~------~~~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 130 VLNFTLQFLE------PSERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred ehhhHHHhCC------HHHHHHHHHHHHHhcCCCCEEEEE
Confidence 4332211110 011358999999999999999884
No 57
>PLN02244 tocopherol O-methyltransferase
Probab=99.47 E-value=9.3e-13 Score=124.12 Aligned_cols=105 Identities=18% Similarity=0.233 Sum_probs=83.1
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
...+|||||||+|.++..+++.+ +++++|+|+|+.|++.|+++++..+. .+++|+++|+.+. ..++..+|.++
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-----~~~~~~FD~V~ 191 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-----PFEDGQFDLVW 191 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-----CCCCCCccEEE
Confidence 35689999999999999999987 78999999999999999999988876 4699999998653 12456678776
Q ss_pred eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743 225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~ 264 (336)
......+.. ...++++++.++|||||++++.+
T Consensus 192 s~~~~~h~~--------d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 192 SMESGEHMP--------DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred ECCchhccC--------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 543222211 12489999999999999999843
No 58
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.46 E-value=8.5e-13 Score=115.27 Aligned_cols=164 Identities=12% Similarity=0.116 Sum_probs=105.5
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCC------CeEEEEecChHHHHHHHHHHHHhCCC---cEEEEecchhHHHHhhhcCC
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKD------LNFLGLEVNGKLVTHCRDSLQLSGIT---NGYFIATNATSTFRSIVASY 216 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~------~~v~giDis~~~l~~a~~n~~~~~~~---nv~~~~~d~~~~~d~ivsnp 216 (336)
+..++||++||||-++..+.+..+. .+|+.+|||++|++.+++++.+.++. .+.|+.+|+.++ +.|
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-----pFd 174 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-----PFD 174 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-----CCC
Confidence 4689999999999999999887655 89999999999999999999876653 389999999874 236
Q ss_pred CCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee----ecccc
Q 019743 217 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL----VQDEC 292 (336)
Q Consensus 217 p~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~----~~d~~ 292 (336)
+.++|...+.|.--.. -...+.+++++|+|||||+|++---....-+.+..+...+-|..+-+ ..+++
T Consensus 175 d~s~D~yTiafGIRN~--------th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~ 246 (296)
T KOG1540|consen 175 DDSFDAYTIAFGIRNV--------THIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDR 246 (296)
T ss_pred CCcceeEEEecceecC--------CCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhH
Confidence 6777876655421100 01248899999999999999872211111123333333333333211 11111
Q ss_pred ccccCCCCCCCCCC--CCCCCHHHHHHHHcCCCeEE
Q 019743 293 DTKTNQGGWLGENS--FGVRSDWEQHVIDRGAPMYR 326 (336)
Q Consensus 293 ~~~~~~~~~~~~~~--~~~~t~~e~~~~~~G~~i~~ 326 (336)
..-..+.+.. ..+..+|..+-...|++...
T Consensus 247 ----~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 247 ----KSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred ----hhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 0001122221 22345788888899987654
No 59
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.46 E-value=9.7e-13 Score=119.20 Aligned_cols=104 Identities=15% Similarity=0.215 Sum_probs=80.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
+.+|||+|||+|.++..+++. ..+|+|+|+|++|++.|++++...++ .+++++++|+.+..+ .++..+|.++.
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~----~~~~~fD~V~~ 118 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ----HLETPVDLILF 118 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh----hcCCCCCEEEe
Confidence 568999999999999999987 57899999999999999999988876 479999999876421 13456677665
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~ 264 (336)
...-.+.. ....+++++.++|||||.+++..
T Consensus 119 ~~vl~~~~--------~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 119 HAVLEWVA--------DPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred hhHHHhhC--------CHHHHHHHHHHHcCCCeEEEEEE
Confidence 42211110 11478999999999999998743
No 60
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.45 E-value=3.5e-12 Score=119.08 Aligned_cols=147 Identities=14% Similarity=0.114 Sum_probs=100.7
Q ss_pred ccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHH
Q 019743 113 DIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL 192 (336)
Q Consensus 113 digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~ 192 (336)
+.++.++......++... + . ....+|||||||+|.++..+++..+..+++++|+|+.|++.|+++..
T Consensus 92 ~~~~~~e~~r~~~l~~~~-------l----~-~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~- 158 (340)
T PLN02490 92 NPGHWTEDMRDDALEPAD-------L----S-DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP- 158 (340)
T ss_pred ecCcchHHHHHHHHhhcc-------c----C-CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-
Confidence 345666666555554322 1 0 12568999999999999999998888899999999999999998764
Q ss_pred hCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH-----
Q 019743 193 SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----- 267 (336)
Q Consensus 193 ~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~----- 267 (336)
..++.++++|+.+. +-++..+|.++....-.+.. ...++++++.+.|+|||++++.....
T Consensus 159 --~~~i~~i~gD~e~l-----p~~~~sFDvVIs~~~L~~~~--------d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~ 223 (340)
T PLN02490 159 --LKECKIIEGDAEDL-----PFPTDYADRYVSAGSIEYWP--------DPQRGIKEAYRVLKIGGKACLIGPVHPTFWL 223 (340)
T ss_pred --ccCCeEEeccHHhC-----CCCCCceeEEEEcChhhhCC--------CHHHHHHHHHHhcCCCcEEEEEEecCcchhH
Confidence 34688999998653 11345577665532111110 12378999999999999988732110
Q ss_pred -----------HHHHHHHHHHHHcCCcceee
Q 019743 268 -----------EVMLRMKQQFLEYGKGKLVL 287 (336)
Q Consensus 268 -----------~~~~~~~~~l~~~g~~~~~~ 287 (336)
...+++.+.+++.||..+++
T Consensus 224 ~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 224 SRFFADVWMLFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred HHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence 01356677888888886654
No 61
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.44 E-value=2.5e-13 Score=127.51 Aligned_cols=125 Identities=16% Similarity=0.185 Sum_probs=94.9
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH------HHHhhhcCCCCeE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS------TFRSIVASYPGKL 220 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~------~~d~ivsnpp~~~ 220 (336)
+.+|||+|||||.+++.++.. ..+++|+|+++.|++.|++|++.++..++.++++|+.+ .+|.+++||||..
T Consensus 183 g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~ 260 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGR 260 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcC
Confidence 568999999999999987765 68899999999999999999999998888899999864 3677788888743
Q ss_pred EEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743 221 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 287 (336)
Q Consensus 221 d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 287 (336)
.... . .+.....+.++++++.+.|+|||++++.+... ..+.+.+++.|| ....
T Consensus 261 ~~~~-----~-----~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~---~~~~~~~~~~g~-i~~~ 313 (329)
T TIGR01177 261 STTA-----A-----GDGLESLYERSLEEFHEVLKSEGWIVYAVPTR---IDLESLAEDAFR-VVKR 313 (329)
T ss_pred cccc-----c-----CCchHHHHHHHHHHHHHHccCCcEEEEEEcCC---CCHHHHHhhcCc-chhe
Confidence 2100 0 00111246799999999999999998866432 234556788888 5433
No 62
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=1.4e-12 Score=118.41 Aligned_cols=126 Identities=16% Similarity=0.276 Sum_probs=93.7
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
++.++||+|||||.++++.++.. ...++|+|++|-+++.|++|++.|++.. ++.-..+... ...| ..+|.|+
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~----~~~~--~~~DvIV 234 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLE----VPEN--GPFDVIV 234 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchh----hccc--CcccEEE
Confidence 36789999999999999999885 4569999999999999999999998764 2222222211 1111 2345555
Q ss_pred eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeec
Q 019743 225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQ 289 (336)
Q Consensus 225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 289 (336)
.+.. +....++...+.+.|||||++++.--..++.+.+.+.+.+.||.......
T Consensus 235 ANIL-----------A~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~ 288 (300)
T COG2264 235 ANIL-----------AEVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLE 288 (300)
T ss_pred ehhh-----------HHHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEe
Confidence 5421 11235889999999999999999766678889999999999998776543
No 63
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.44 E-value=4.3e-12 Score=116.95 Aligned_cols=122 Identities=15% Similarity=0.207 Sum_probs=91.3
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
+.+|||+|||||.+++.+++.. ..+++|+|+|+.|++.|++|+..+++.+ +.+...+.... ++..+|.++.
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-------~~~~fDlVva 231 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-------IEGKADVIVA 231 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-------cCCCceEEEE
Confidence 5789999999999999888753 4689999999999999999999888753 66666553211 2335676665
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeee
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLV 288 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 288 (336)
+..- .....++.++.+.|+|||++++..-...+...+.+.+++. |......
T Consensus 232 n~~~-----------~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~~ 282 (288)
T TIGR00406 232 NILA-----------EVIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEIR 282 (288)
T ss_pred ecCH-----------HHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeEe
Confidence 5311 1235789999999999999999654556677888888776 7765544
No 64
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.44 E-value=1.9e-12 Score=117.22 Aligned_cols=98 Identities=16% Similarity=0.081 Sum_probs=77.2
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
.+.+|||||||+|.++..+++..|+.+++|+|+|+.|++.|+++ ++.++++|+.+. . +...+|.++.
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~----~--~~~~fD~v~~ 95 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDW----K--PKPDTDVVVS 95 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhC----C--CCCCceEEEE
Confidence 35789999999999999999999999999999999999998652 477899998643 1 2345787776
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~ 264 (336)
...-.|.. ....+++++++.|||||.+++..
T Consensus 96 ~~~l~~~~--------d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 96 NAALQWVP--------EHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred ehhhhhCC--------CHHHHHHHHHHhCCCCcEEEEEc
Confidence 54333321 12488999999999999999864
No 65
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.44 E-value=7.8e-12 Score=114.32 Aligned_cols=130 Identities=15% Similarity=0.181 Sum_probs=95.2
Q ss_pred CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743 146 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
.+.+|||||||+|..++.+++. .+..+++|+|+|+.|++.|+++....+..++.++++|+... +.++..+|.++
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l-----~~~~~~fD~Vi 151 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL-----PVADNSVDVII 151 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhC-----CCCCCceeEEE
Confidence 3679999999999988877776 46678999999999999999999888888999999997652 22445677766
Q ss_pred eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc------H----------------HHHHHHHHHHHHcCC
Q 019743 225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI------E----------------EVMLRMKQQFLEYGK 282 (336)
Q Consensus 225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~------~----------------~~~~~~~~~l~~~g~ 282 (336)
.+..-.+. ...+++++++.++|||||++++..-. . .....+.+++.+.||
T Consensus 152 ~~~v~~~~--------~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf 223 (272)
T PRK11873 152 SNCVINLS--------PDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGF 223 (272)
T ss_pred EcCcccCC--------CCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCC
Confidence 54321110 01247899999999999999983210 0 012356677888888
Q ss_pred cceeee
Q 019743 283 GKLVLV 288 (336)
Q Consensus 283 ~~~~~~ 288 (336)
..+.+.
T Consensus 224 ~~v~i~ 229 (272)
T PRK11873 224 VDITIQ 229 (272)
T ss_pred CceEEE
Confidence 876554
No 66
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.43 E-value=2.2e-13 Score=103.34 Aligned_cols=95 Identities=16% Similarity=0.282 Sum_probs=72.9
Q ss_pred EEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCC
Q 019743 151 VDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 230 (336)
Q Consensus 151 LDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp 230 (336)
||+|||+|..+..+++. +..+++|+|+|+++++.++++... .++.+.++|+... ..|+.++|.++....-.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~---~~~~~~~~d~~~l-----~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN---EGVSFRQGDAEDL-----PFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT---STEEEEESBTTSS-----SS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc---cCchheeehHHhC-----cccccccccccccccee
Confidence 79999999999999998 789999999999999999987753 3466899997653 33678899887653222
Q ss_pred CCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 231 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 231 ~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
+. ....++++++.|+|||||++++
T Consensus 72 ~~--------~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HL--------EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GS--------SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ec--------cCHHHHHHHHHHHcCcCeEEeC
Confidence 21 1345899999999999999986
No 67
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.43 E-value=2.4e-12 Score=125.62 Aligned_cols=125 Identities=20% Similarity=0.214 Sum_probs=92.0
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHh-hhcCCCCeEEEEEe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRS-IVASYPGKLILVSI 225 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~-ivsnpp~~~d~i~~ 225 (336)
+.+|||+|||+|.+++.+|+.. .+++|+|+|+.|++.|++|++.++++|++++++|+.+.+.. .+ ++..+|.+++
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~--~~~~fD~Vi~ 373 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPW--ALGGFDKVLL 373 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhh--hcCCCCEEEE
Confidence 4689999999999999999884 68999999999999999999999988999999999754211 11 1233565554
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeee
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLV 288 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 288 (336)
+ |... -....++.+.+ ++|++.+|+.++...++..+..+ .+.||....+.
T Consensus 374 d---PPr~--------g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L-~~~gY~l~~i~ 423 (443)
T PRK13168 374 D---PPRA--------GAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVL-VEAGYRLKRAG 423 (443)
T ss_pred C---cCCc--------ChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHH-hhCCcEEEEEE
Confidence 3 2110 01245555554 69999999999887877776655 46688765543
No 68
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=1.5e-12 Score=108.08 Aligned_cols=164 Identities=13% Similarity=0.128 Sum_probs=116.2
Q ss_pred cccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHH
Q 019743 112 VDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSL 190 (336)
Q Consensus 112 ~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~ 190 (336)
+.+..+|..+.+..-+.+. .+.+. ....++|||||||+.+..|++. .|+..+.++||++.|++...+.+
T Consensus 19 YEPaEDTFlLlDaLekd~~------eL~~~----~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA 88 (209)
T KOG3191|consen 19 YEPAEDTFLLLDALEKDAA------ELKGH----NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETA 88 (209)
T ss_pred cCccchhhHHHHHHHHHHH------HHhhc----CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHH
Confidence 4456778777765544332 11111 2467999999999999999987 58899999999999999999998
Q ss_pred HHhCCCcEEEEecchhH-----HHHhhhcCCCCeEEEEEeeCCCCCCCc---chhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 191 QLSGITNGYFIATNATS-----TFRSIVASYPGKLILVSIQCPNPDFNR---PEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 191 ~~~~~~nv~~~~~d~~~-----~~d~ivsnpp~~~d~i~~~~~dp~~~~---~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
+.|+. ++..++.|+.. ..|.++-||||.+....- .++.+... .....|.+..+++.++...|.|.|.+|+
T Consensus 89 ~~n~~-~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt~~~~-i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Yl 166 (209)
T KOG3191|consen 89 RCNRV-HIDVVRTDLLSGLRNESVDVLVFNPPYVPTSDEE-IGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYL 166 (209)
T ss_pred HhcCC-ccceeehhHHhhhccCCccEEEECCCcCcCCccc-chhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEe
Confidence 87764 47888998865 367788899996432100 00011000 0112355678999999999999999999
Q ss_pred EeCcHHHHHHHHHHHHHcCCcceee
Q 019743 263 QSDIEEVMLRMKQQFLEYGKGKLVL 287 (336)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~g~~~~~~ 287 (336)
-.-..+..+++.+.++..||.....
T Consensus 167 v~~~~N~p~ei~k~l~~~g~~~~~~ 191 (209)
T KOG3191|consen 167 VALRANKPKEILKILEKKGYGVRIA 191 (209)
T ss_pred eehhhcCHHHHHHHHhhcccceeEE
Confidence 6655556778888999999876543
No 69
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.42 E-value=1.4e-12 Score=116.92 Aligned_cols=104 Identities=14% Similarity=0.222 Sum_probs=78.9
Q ss_pred CCeEEEEeccccHHHHHHHHh--CCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILV 223 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~--~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i 223 (336)
..+|||||||+|.++..+++. .|+++++|+|+|+.|++.|++++...+. .+++++++|+... ..++ +|.+
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~--~d~v 126 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV-----EIKN--ASMV 126 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhC-----CCCC--CCEE
Confidence 568999999999999999987 4789999999999999999999877653 4799999998653 1122 3444
Q ss_pred EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743 224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 263 (336)
Q Consensus 224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~ 263 (336)
++.+...+... .....+++++++.|+|||.+++.
T Consensus 127 ~~~~~l~~~~~------~~~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 127 ILNFTLQFLPP------EDRIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred eeecchhhCCH------HHHHHHHHHHHHhcCCCeEEEEe
Confidence 44433222110 11348999999999999999984
No 70
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.42 E-value=1.1e-12 Score=114.54 Aligned_cols=109 Identities=19% Similarity=0.301 Sum_probs=84.6
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe-
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI- 225 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~- 225 (336)
+.+|||+|||-|.++..+|+. +++|+|+|+|+++++.|+..+.+.++. +.+.+..+++. .- ....||.|..
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~edl---~~--~~~~FDvV~cm 131 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDL---AS--AGGQFDVVTCM 131 (243)
T ss_pred CCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhcccc-ccchhhhHHHH---Hh--cCCCccEEEEh
Confidence 678999999999999999999 599999999999999999999888764 66766666553 11 2244565433
Q ss_pred ----eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHH
Q 019743 226 ----QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQ 276 (336)
Q Consensus 226 ----~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 276 (336)
+.|+|. .|+..+.+.+||||.+++.|-++....+....
T Consensus 132 EVlEHv~dp~-------------~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i 173 (243)
T COG2227 132 EVLEHVPDPE-------------SFLRACAKLVKPGGILFLSTINRTLKAYLLAI 173 (243)
T ss_pred hHHHccCCHH-------------HHHHHHHHHcCCCcEEEEeccccCHHHHHHHH
Confidence 345553 79999999999999999988776655554443
No 71
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.42 E-value=3.9e-12 Score=113.61 Aligned_cols=105 Identities=15% Similarity=0.199 Sum_probs=87.5
Q ss_pred CCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCC-CeEEEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYP-GKLILV 223 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp-~~~d~i 223 (336)
..+|||+|||+|..++++|... ++.+++++|+++++++.|++|++++++. +++++.+|+.+.++.+.++++ ..+|.+
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 5689999999999999999875 4789999999999999999999999985 699999999988777766543 457877
Q ss_pred EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
++.... -.|..+++.+.+.|+|||.+++
T Consensus 149 fiDa~k-----------~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 149 FVDADK-----------PNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred EECCCH-----------HHHHHHHHHHHHhcCCCeEEEE
Confidence 765221 1356888999999999999887
No 72
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.42 E-value=2.7e-12 Score=119.43 Aligned_cols=155 Identities=16% Similarity=0.122 Sum_probs=99.8
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
+.+|||||||+|.++..+|+. +.+|+|+|+|++|++.|++++...+. .++.++++|+.+. .. ++..+|.++.
T Consensus 132 g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l---~~--~~~~FD~Vi~ 204 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL---AD--EGRKFDAVLS 204 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh---hh--ccCCCCEEEE
Confidence 458999999999999999864 78999999999999999988765543 4799999998653 11 3445676654
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeeccccccccCCCCCCCCC
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGEN 305 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~~~~~~~~~ 305 (336)
...-.+. .....+++++.++|||||.+++.+.+............. .+....+. + .+| .| .
T Consensus 205 ~~vLeHv--------~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~-eyi~~~lp-~----gth--~~---~ 265 (322)
T PLN02396 205 LEVIEHV--------ANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGA-EYILRWLP-K----GTH--QW---S 265 (322)
T ss_pred hhHHHhc--------CCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhH-HHHHhcCC-C----CCc--Cc---c
Confidence 3211110 012489999999999999999977554322221111100 00000000 0 001 12 1
Q ss_pred CCCCCCHHHHHHHHcCCCeEEE
Q 019743 306 SFGVRSDWEQHVIDRGAPMYRL 327 (336)
Q Consensus 306 ~~~~~t~~e~~~~~~G~~i~~~ 327 (336)
....+.+++..+.+.|..+...
T Consensus 266 ~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 266 SFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred CCCCHHHHHHHHHHcCCeEEEE
Confidence 1356788888888888877554
No 73
>PHA03411 putative methyltransferase; Provisional
Probab=99.41 E-value=2.6e-12 Score=115.44 Aligned_cols=130 Identities=15% Similarity=0.114 Sum_probs=92.3
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH-----HHHhhhcCCCCeEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS-----TFRSIVASYPGKLI 221 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~-----~~d~ivsnpp~~~d 221 (336)
..+|||+|||+|.+++.++++.+..+++|+|+|+.|++.|+++. .++.++++|+.+ .||.|++||||...
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFESNEKFDVVISNPPFGKI 139 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcccCCCcEEEEcCCcccc
Confidence 45899999999999999988877789999999999999998763 468899999875 37889999998421
Q ss_pred EEEeeCCCCCCCcch---hhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHH------HHHHHHHHHHcCCc
Q 019743 222 LVSIQCPNPDFNRPE---HRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV------MLRMKQQFLEYGKG 283 (336)
Q Consensus 222 ~i~~~~~dp~~~~~~---~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~------~~~~~~~l~~~g~~ 283 (336)
.. .. ...+..... ....+...+++.....+|+|+|.+.+..+..++ ..+..+++.++||.
T Consensus 140 ~~-~d-~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 140 NT-TD-TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLV 208 (279)
T ss_pred Cc-hh-hhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcE
Confidence 10 00 000000000 001122478999999999999988885443333 34667888899986
No 74
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.40 E-value=2.9e-12 Score=111.59 Aligned_cols=102 Identities=12% Similarity=0.092 Sum_probs=78.3
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
..+|||+|||+|..+..+|++ ..+|+|+|+|+.|++.|++++...++.++++...|+.+. + ++..+|.++..
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~-~-----~~~~fD~I~~~ 102 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL-T-----FDGEYDFILST 102 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC-C-----cCCCcCEEEEe
Confidence 468999999999999999987 579999999999999999999888888899999887542 1 12346666544
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
+.-.+. .....+.+++++.++|+|||.+++
T Consensus 103 ~~~~~~------~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 103 VVLMFL------EAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred cchhhC------CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 321110 111235899999999999999655
No 75
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.39 E-value=2.8e-12 Score=115.60 Aligned_cols=104 Identities=16% Similarity=0.178 Sum_probs=82.5
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
++.++||||||.|.+++.+|+++ +.+|+|+++|+++.+.++++++..|++ +++++..|+.+. ...+|.|+
T Consensus 72 ~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~--------~e~fDrIv 142 (283)
T COG2230 72 PGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF--------EEPFDRIV 142 (283)
T ss_pred CCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc--------ccccceee
Confidence 47899999999999999999999 899999999999999999999999997 899999888653 11144443
Q ss_pred eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743 225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~ 264 (336)
..- ..+|-...-++.||+.+.++|+|||.+.+.+
T Consensus 143 Svg------mfEhvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 143 SVG------MFEHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred ehh------hHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 210 0111112246799999999999999999954
No 76
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.39 E-value=2.9e-12 Score=113.09 Aligned_cols=100 Identities=20% Similarity=0.239 Sum_probs=79.1
Q ss_pred CCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
+.+|||||||+|.++..+|+..+ +.+|+++|+++++++.|++|+++++++|++++++|+...+. +...+|.+++
T Consensus 78 ~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~-----~~~~fD~Ii~ 152 (215)
T TIGR00080 78 GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE-----PLAPYDRIYV 152 (215)
T ss_pred cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc-----ccCCCCEEEE
Confidence 57999999999999999999853 57899999999999999999999999999999999865311 1224677666
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 265 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~ 265 (336)
..+.+ .+.+.+.+.|+|||++++...
T Consensus 153 ~~~~~--------------~~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 153 TAAGP--------------KIPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred cCCcc--------------cccHHHHHhcCcCcEEEEEEc
Confidence 53322 334567788999999998654
No 77
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.39 E-value=9.8e-12 Score=112.73 Aligned_cols=99 Identities=19% Similarity=0.238 Sum_probs=79.1
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
..+|||||||+|.++..+++.+|..+++|+|+|+.|++.|+++. .++.++.+|+... . ++..+|.++..
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~----~--~~~~fD~v~~~ 100 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASW----Q--PPQALDLIFAN 100 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhcc----C--CCCCccEEEEc
Confidence 57899999999999999999999999999999999999998763 5688999997642 1 33467777665
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~ 264 (336)
+.-.|.. ....+++++.+.|+|||.+++.+
T Consensus 101 ~~l~~~~--------d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 101 ASLQWLP--------DHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred cChhhCC--------CHHHHHHHHHHhcCCCcEEEEEC
Confidence 4433321 13589999999999999999965
No 78
>PHA03412 putative methyltransferase; Provisional
Probab=99.39 E-value=3.8e-13 Score=118.17 Aligned_cols=103 Identities=16% Similarity=0.178 Sum_probs=77.5
Q ss_pred CCeEEEEeccccHHHHHHHHhC---CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH-----HHHhhhcCCCC
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR---KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS-----TFRSIVASYPG 218 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~---p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~-----~~d~ivsnpp~ 218 (336)
..+|||+|||||.+++.++++. +..+++|+|+++.|++.|++|. .++.++++|+.. .||.|++||||
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~~~~FDlIIsNPPY 124 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEFDTLFDMAISNPPF 124 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccccCCccEEEECCCC
Confidence 4689999999999999999874 4679999999999999999875 347788888853 48999999999
Q ss_pred eEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 219 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 219 ~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
.... ..+. ...+...++..++++.+.+++++|+ +++
T Consensus 125 ~~~~----~~d~---~ar~~g~~~~~~li~~A~~Ll~~G~-~IL 160 (241)
T PHA03412 125 GKIK----TSDF---KGKYTGAEFEYKVIERASQIARQGT-FII 160 (241)
T ss_pred CCcc----cccc---CCcccccHHHHHHHHHHHHHcCCCE-EEe
Confidence 6421 1111 1223344567789999998665555 555
No 79
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.39 E-value=2.3e-12 Score=118.09 Aligned_cols=121 Identities=19% Similarity=0.271 Sum_probs=87.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
+.+|||+|||||.+++..++.. ..+|+|+|+++.+++.|++|++.|++.+ +.+ . ...+. +...+|.+..
T Consensus 162 g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v-~-~~~~~-------~~~~~dlvvA 231 (295)
T PF06325_consen 162 GKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNGVEDRIEV-S-LSEDL-------VEGKFDLVVA 231 (295)
T ss_dssp TSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE-S-CTSCT-------CCS-EEEEEE
T ss_pred CCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE-E-Eeccc-------ccccCCEEEE
Confidence 5699999999999999999885 3579999999999999999999999875 322 2 11111 2345676666
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeec
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQ 289 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 289 (336)
+.-. -....++..+.++|+|||++++.--...+.+.+.+.+.+ ||...+...
T Consensus 232 NI~~-----------~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~ 283 (295)
T PF06325_consen 232 NILA-----------DVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEERE 283 (295)
T ss_dssp ES-H-----------HHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEE
T ss_pred CCCH-----------HHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEE
Confidence 5211 123478888899999999999955445667888888876 988765543
No 80
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.39 E-value=6.7e-12 Score=114.34 Aligned_cols=104 Identities=21% Similarity=0.255 Sum_probs=75.8
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
++.+|||||||.|.+++.+|+++ +++|+|+.+|++..+.|++++++.|+. ++.+...|..+. +..+|.|+
T Consensus 62 ~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~--------~~~fD~Iv 132 (273)
T PF02353_consen 62 PGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL--------PGKFDRIV 132 (273)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----------S-SEEE
T ss_pred CCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc--------CCCCCEEE
Confidence 46899999999999999999998 899999999999999999999998886 589999987653 11445543
Q ss_pred eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743 225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~ 264 (336)
..-. ..|-....++.+++.+.++|+|||++++.+
T Consensus 133 Si~~------~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 133 SIEM------FEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp EESE------GGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred EEec------hhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 3211 112222356799999999999999999854
No 81
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.37 E-value=4.2e-12 Score=130.14 Aligned_cols=132 Identities=10% Similarity=0.110 Sum_probs=97.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC--cEEEEecchhHH-------HHhhhcCCC
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATST-------FRSIVASYP 217 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~--nv~~~~~d~~~~-------~d~ivsnpp 217 (336)
+.+|||+|||||.+++.+|+.. ..+|+++|+|+.+++.|++|++.++++ +++++++|+++. ||.|+.|||
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 4689999999999999999863 447999999999999999999999885 799999998653 566666666
Q ss_pred CeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeee
Q 019743 218 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLV 288 (336)
Q Consensus 218 ~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 288 (336)
+.... .. . .........+..++..+.+.|+|||.+++.+.... .....+.+.+.|+....+.
T Consensus 618 ~f~~~-----~~--~-~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~-~~~~~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 618 TFSNS-----KR--M-EDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG-FKMDEEGLAKLGLKAEEIT 679 (702)
T ss_pred CCCCC-----Cc--c-chhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc-CChhHHHHHhCCCeEEEEe
Confidence 52110 00 0 00011122467899999999999999999886543 4455777788888765444
No 82
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.37 E-value=1.2e-13 Score=106.54 Aligned_cols=99 Identities=19% Similarity=0.262 Sum_probs=62.8
Q ss_pred EEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCC
Q 019743 151 VDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 230 (336)
Q Consensus 151 LDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp 230 (336)
||||||+|.++..++.++|..+++|+|+|+.|++.|+++....+..+...+..+..+.++.. ++..+|.++....-.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYD---PPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CC---C----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcc---cccccceehhhhhHh
Confidence 79999999999999999999999999999999999999988876555555554443321110 124677776654433
Q ss_pred CCCcchhhhhcchHHHHHHHHhcCcCCcEE
Q 019743 231 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKV 260 (336)
Q Consensus 231 ~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l 260 (336)
|. ...+.+++.+++.|+|||+|
T Consensus 78 ~l--------~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HL--------EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ----------S-HHHHHHHHTTT-TSS-EE
T ss_pred hh--------hhHHHHHHHHHHHcCCCCCC
Confidence 32 12358999999999999986
No 83
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.35 E-value=3.2e-12 Score=106.21 Aligned_cols=126 Identities=21% Similarity=0.318 Sum_probs=94.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhH------HHHhhhcCCCCe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATS------TFRSIVASYPGK 219 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~------~~d~ivsnpp~~ 219 (336)
.++|||+|||.|.+...|++..-....+|+|.|+++++.|+..+++.+.+| ++|.+.|+.+ .||.+. ..+.
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvl--DKGT 145 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVL--DKGT 145 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEe--ecCc
Confidence 459999999999999999998545569999999999999998888888888 9999999875 356555 2445
Q ss_pred EEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcc
Q 019743 220 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 284 (336)
Q Consensus 220 ~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~ 284 (336)
+|.+.+. |+-. ..|+ ...+..+.+.|+|||.+.+.+.+ .-.+++.+.+...+|..
T Consensus 146 ~DAisLs-~d~~------~~r~--~~Y~d~v~~ll~~~gifvItSCN-~T~dELv~~f~~~~f~~ 200 (227)
T KOG1271|consen 146 LDAISLS-PDGP------VGRL--VVYLDSVEKLLSPGGIFVITSCN-FTKDELVEEFENFNFEY 200 (227)
T ss_pred eeeeecC-CCCc------ccce--eeehhhHhhccCCCcEEEEEecC-ccHHHHHHHHhcCCeEE
Confidence 5655543 3321 1111 14556677889999999996544 44778888888888764
No 84
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.35 E-value=4.8e-12 Score=108.08 Aligned_cols=143 Identities=14% Similarity=0.127 Sum_probs=96.3
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH-----HHhhhcCCCCeEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST-----FRSIVASYPGKLI 221 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~-----~d~ivsnpp~~~d 221 (336)
..+|.|||||+|..+..|++++|++.++|+|-|++|++.|+++ +.|++|.++|+... .|++++|.-..
T Consensus 31 ~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r-----lp~~~f~~aDl~~w~p~~~~dllfaNAvlq-- 103 (257)
T COG4106 31 PRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR-----LPDATFEEADLRTWKPEQPTDLLFANAVLQ-- 103 (257)
T ss_pred cceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh-----CCCCceecccHhhcCCCCccchhhhhhhhh--
Confidence 4689999999999999999999999999999999999999553 57899999998753 44455443221
Q ss_pred EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc-H--HHHHHHHHHHHHcCCcceeeeccccccccCC
Q 019743 222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-E--EVMLRMKQQFLEYGKGKLVLVQDECDTKTNQ 298 (336)
Q Consensus 222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~-~--~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~~ 298 (336)
..||. .+++..+...|.|||.+.+.... . .....|.+...+..|... ..+
T Consensus 104 ----WlpdH-------------~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~--l~~-------- 156 (257)
T COG4106 104 ----WLPDH-------------PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQE--LGG-------- 156 (257)
T ss_pred ----hcccc-------------HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhh--hCc--------
Confidence 11222 37888889999999999997642 1 122345555544444421 111
Q ss_pred CCCCCCCCCCCCCHHHHHHHHcCCCe
Q 019743 299 GGWLGENSFGVRSDWEQHVIDRGAPM 324 (336)
Q Consensus 299 ~~~~~~~~~~~~t~~e~~~~~~G~~i 324 (336)
.+- ...+......|.+.+...+-++
T Consensus 157 ~~~-~r~~v~s~a~Yy~lLa~~~~rv 181 (257)
T COG4106 157 RGL-TRAPLPSPAAYYELLAPLACRV 181 (257)
T ss_pred ccc-ccCCCCCHHHHHHHhCccccee
Confidence 000 1233445567777777666543
No 85
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.35 E-value=2.2e-12 Score=99.93 Aligned_cols=98 Identities=19% Similarity=0.332 Sum_probs=71.0
Q ss_pred EEEEeccccHHHHHHHHhC---CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 150 VVDIGSGNGLFLLGMARKR---KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 150 vLDiGcGsG~~~~~la~~~---p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
|||+|||+|..+..+++.+ |..+++|+|+|++|++.|+++....+. ++++++.|+.+. + .. ...+|.++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l-~--~~--~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDL-P--FS--DGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCH-H--HH--SSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHC-c--cc--CCCeeEEEEc
Confidence 7999999999999999886 568999999999999999999987665 799999999763 3 22 3356766653
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCc
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG 258 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG 258 (336)
...- ++-.....+++++++.++|+|||
T Consensus 75 ~~~~-----~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 75 GLSL-----HHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp TTGG-----GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCcc-----CCCCHHHHHHHHHHHHHHhCCCC
Confidence 2211 11112234699999999999998
No 86
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.35 E-value=1.1e-11 Score=107.72 Aligned_cols=101 Identities=9% Similarity=-0.003 Sum_probs=74.2
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
..+|||+|||+|.+++.+|++ +.+|+|+|+|+.|++.+++++..++++ +.+...|+... + + +..+|.++..
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~-~--~---~~~fD~I~~~ 101 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLP-LRTDAYDINAA-A--L---NEDYDFIFST 101 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhc-c--c---cCCCCEEEEe
Confidence 468999999999999999986 579999999999999999998877764 77777776431 1 1 2235655543
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
+.-.+. .......+++++.+.|+|||++++
T Consensus 102 ~~~~~~------~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 102 VVFMFL------QAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred cccccC------CHHHHHHHHHHHHHHhCCCcEEEE
Confidence 221111 011235899999999999998665
No 87
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.34 E-value=4e-11 Score=109.09 Aligned_cols=103 Identities=17% Similarity=0.110 Sum_probs=77.6
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
..+|||||||+|..+..+++.+ .++++|+|+|+.|++.|+++... ..++.+.++|+... +-|+.++|.++..
T Consensus 53 ~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~-----~~~~~~FD~V~s~ 124 (263)
T PTZ00098 53 NSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKK-----DFPENTFDMIYSR 124 (263)
T ss_pred CCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccC-----CCCCCCeEEEEEh
Confidence 5789999999999999998765 67999999999999999987653 35799999997642 1245678877653
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 263 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~ 263 (336)
..-.+. .......++++++++|||||++++.
T Consensus 125 ~~l~h~------~~~d~~~~l~~i~r~LkPGG~lvi~ 155 (263)
T PTZ00098 125 DAILHL------SYADKKKLFEKCYKWLKPNGILLIT 155 (263)
T ss_pred hhHHhC------CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 211110 0012358999999999999999984
No 88
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.34 E-value=6.9e-12 Score=122.44 Aligned_cols=138 Identities=17% Similarity=0.118 Sum_probs=95.4
Q ss_pred CCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH-------HHHhhhcCCCC
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS-------TFRSIVASYPG 218 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~-------~~d~ivsnpp~ 218 (336)
+.+|||+|||+|..++.+++.. +..+++|+|+++.+++.+++|++++|++++.++++|+.. .||.++.|||.
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pc 330 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAPC 330 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCCC
Confidence 5689999999999999999875 678999999999999999999999999889999999854 25666666665
Q ss_pred eEEEEEeeCCCC-CCCcchh--hhhcchHHHHHHHHhcCcCCcEEEEEeCc---HHHHHHHHHHHHHcC-Ccc
Q 019743 219 KLILVSIQCPNP-DFNRPEH--RWRMVQRSLVEAVSDLLVHDGKVFLQSDI---EEVMLRMKQQFLEYG-KGK 284 (336)
Q Consensus 219 ~~d~i~~~~~dp-~~~~~~~--~~~l~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~~l~~~g-~~~ 284 (336)
+-....-..|+. |...... .-...+..+++.+.+.|||||+++..|.. .+....+...+++++ |..
T Consensus 331 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~ 403 (444)
T PRK14902 331 SGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFEL 403 (444)
T ss_pred CCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEE
Confidence 422221112221 1110000 00113568999999999999999975432 222334455566654 443
No 89
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.34 E-value=2e-11 Score=106.41 Aligned_cols=125 Identities=17% Similarity=0.217 Sum_probs=99.0
Q ss_pred ccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHH
Q 019743 111 PVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDS 189 (336)
Q Consensus 111 ~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n 189 (336)
.+-++|++...+...++... ..+||||||++|..++.+|+..| +.+++.+|++++..+.|+++
T Consensus 26 ~~~i~~~~g~lL~~l~~~~~----------------~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~ 89 (205)
T PF01596_consen 26 QMSISPETGQLLQMLVRLTR----------------PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIAREN 89 (205)
T ss_dssp GGSHHHHHHHHHHHHHHHHT-----------------SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHhcC----------------CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHH
Confidence 34456878777765554322 56899999999999999999875 68999999999999999999
Q ss_pred HHHhCCC-cEEEEecchhHHHHhhhcCC-CCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 190 LQLSGIT-NGYFIATNATSTFRSIVASY-PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 190 ~~~~~~~-nv~~~~~d~~~~~d~ivsnp-p~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
+++.|+. +++++.+|+.+.++.+..+- +..+|.+++.-. ...|..+++.+.+.|+|||.+++
T Consensus 90 ~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~-----------K~~y~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 90 FRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD-----------KRNYLEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp HHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST-----------GGGHHHHHHHHHHHEEEEEEEEE
T ss_pred HHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc-----------ccchhhHHHHHhhhccCCeEEEE
Confidence 9999875 69999999998777666432 356898887621 12467888899999999999998
No 90
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.33 E-value=7.7e-12 Score=115.83 Aligned_cols=75 Identities=15% Similarity=0.244 Sum_probs=62.6
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh-CCC-cEEEEe-cch---h-------HHHHhh
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS-GIT-NGYFIA-TNA---T-------STFRSI 212 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~-~~~-nv~~~~-~d~---~-------~~~d~i 212 (336)
...++||||||+|++...++.+.++++++|+||++.+++.|++|++.+ ++. ++.+.+ .|. . +.||.+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 357899999999999999999888999999999999999999999998 675 577653 222 2 248999
Q ss_pred hcCCCCeE
Q 019743 213 VASYPGKL 220 (336)
Q Consensus 213 vsnpp~~~ 220 (336)
++||||..
T Consensus 194 vcNPPf~~ 201 (321)
T PRK11727 194 LCNPPFHA 201 (321)
T ss_pred EeCCCCcC
Confidence 99999853
No 91
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.33 E-value=2.4e-11 Score=107.03 Aligned_cols=100 Identities=17% Similarity=0.223 Sum_probs=78.4
Q ss_pred CCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
+.+|||||||||.++..+++.. ++.+++++|+++++++.|++|++..+..|+.++++|+...+ . +...+|.+++
T Consensus 77 g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~---~--~~~~fD~I~~ 151 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY---E--ENAPYDRIYV 151 (212)
T ss_pred cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC---C--cCCCcCEEEE
Confidence 5789999999999999999874 45799999999999999999999999889999999986531 1 1234577766
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 265 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~ 265 (336)
...-+ .+.+.+.+.|||||++++..+
T Consensus 152 ~~~~~--------------~~~~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 152 TAAGP--------------DIPKPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred CCCcc--------------cchHHHHHhhCCCcEEEEEEc
Confidence 43221 233456678999999999654
No 92
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.33 E-value=1.3e-11 Score=119.74 Aligned_cols=135 Identities=19% Similarity=0.235 Sum_probs=94.2
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH--------HHHhhhcCCC
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS--------TFRSIVASYP 217 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~--------~~d~ivsnpp 217 (336)
++.+|||+|||+|..++.+++..++.+++|+|+|+.+++.+++|+++++.. ++++++|+.. .||.++.|||
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchhhcccCCCCEEEECCC
Confidence 357899999999999999999887789999999999999999999998875 6889998853 2667777777
Q ss_pred CeEEEEEeeCCCC-CCCcchh--hhhcchHHHHHHHHhcCcCCcEEEEEeCc---HHHHHHHHHHHHHcC
Q 019743 218 GKLILVSIQCPNP-DFNRPEH--RWRMVQRSLVEAVSDLLVHDGKVFLQSDI---EEVMLRMKQQFLEYG 281 (336)
Q Consensus 218 ~~~d~i~~~~~dp-~~~~~~~--~~~l~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~~l~~~g 281 (336)
++-....-..|+. |...... .....+++++..+.+.|||||++++.|.. .+..+.+...+++++
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~ 392 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHP 392 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCC
Confidence 6532222111221 1111000 01124578999999999999999986631 222234555666553
No 93
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.32 E-value=1.8e-11 Score=108.50 Aligned_cols=125 Identities=16% Similarity=0.148 Sum_probs=91.5
Q ss_pred eEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEEeeC
Q 019743 149 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQC 227 (336)
Q Consensus 149 ~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~ 227 (336)
+|||||||+|.++..+++.+|+.+++|+|+|+.+++.|++++...++. ++.++..|+... .+ +..+|.++...
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~---~~---~~~fD~I~~~~ 75 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD---PF---PDTYDLVFGFE 75 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC---CC---CCCCCEeehHH
Confidence 699999999999999999998899999999999999999999887764 689999887442 11 23456554321
Q ss_pred CCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH---------------HHHHHHHHHHHHcCCcceee
Q 019743 228 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE---------------EVMLRMKQQFLEYGKGKLVL 287 (336)
Q Consensus 228 ~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~---------------~~~~~~~~~l~~~g~~~~~~ 287 (336)
.-.+. -....+++++.++|+|||++++..-.. .....+.+.+.+.||.....
T Consensus 76 ~l~~~--------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 76 VIHHI--------KDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred HHHhC--------CCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEe
Confidence 11110 013589999999999999999843110 01245677888899987644
No 94
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.31 E-value=1.8e-11 Score=107.25 Aligned_cols=100 Identities=10% Similarity=0.124 Sum_probs=77.6
Q ss_pred CCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
+.+|||+|||||.++..+++..+ ..+++++|+++++++.|++|+..++.. +++++++|+.+.+. +...+|.++
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~-----~~~~fD~Ii 147 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE-----KHAPFDAII 147 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc-----cCCCccEEE
Confidence 57899999999999999998753 679999999999999999999988875 59999999865311 123467766
Q ss_pred eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743 225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 265 (336)
Q Consensus 225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~ 265 (336)
+...-+ .+.+++.+.|+|||++++...
T Consensus 148 ~~~~~~--------------~~~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 148 VTAAAS--------------TIPSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred EccCcc--------------hhhHHHHHhcCcCcEEEEEEc
Confidence 653322 333567789999999988553
No 95
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.31 E-value=1.7e-11 Score=111.56 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=85.9
Q ss_pred CCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH------HHhhhcCCCCe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST------FRSIVASYPGK 219 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~------~d~ivsnpp~~ 219 (336)
+.+|||+|||+|..++.+|+... ...++++|+++.+++.+++|++++++.|+.+++.|+... ||.++.+||.+
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcs 151 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCS 151 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCC
Confidence 57899999999999999998753 468999999999999999999999988999999997642 45555555543
Q ss_pred EEEEEeeCCCCCCCcchhhh-----hcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743 220 LILVSIQCPNPDFNRPEHRW-----RMVQRSLVEAVSDLLVHDGKVFLQSDI 266 (336)
Q Consensus 220 ~d~i~~~~~dp~~~~~~~~~-----~l~~~~~l~~~~~~LkpgG~l~~~~~~ 266 (336)
-..+.- .+|..+...... ...+.++++.+.+.|||||+++..|..
T Consensus 152 g~G~~~--~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 152 GEGVIR--KDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred CCcccc--cChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 221111 122211111111 123578999999999999999887643
No 96
>PLN02476 O-methyltransferase
Probab=99.28 E-value=8.1e-11 Score=106.73 Aligned_cols=105 Identities=12% Similarity=0.178 Sum_probs=86.2
Q ss_pred CCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCC-CCeEEEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASY-PGKLILV 223 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnp-p~~~d~i 223 (336)
..+|||||||+|..++++|+..| +.+++++|+++++.+.|++|+++.|+. +++++.+|+.+.++....+. +..+|.+
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 56899999999999999998764 678999999999999999999999986 79999999998776544322 2356777
Q ss_pred EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
++. .+ ..-|..+++.+.+.|+|||.+++
T Consensus 199 FID---a~--------K~~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 199 FVD---AD--------KRMYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred EEC---CC--------HHHHHHHHHHHHHhcCCCcEEEE
Confidence 665 22 12467899999999999999887
No 97
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.28 E-value=8e-11 Score=102.83 Aligned_cols=117 Identities=18% Similarity=0.206 Sum_probs=96.2
Q ss_pred cccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHhC
Q 019743 116 PRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSG 194 (336)
Q Consensus 116 peT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~~ 194 (336)
|+|-..+...++... ..+||||||+.|..++.+|...| +.+++.+|+++++.+.|++|+++.|
T Consensus 45 ~e~g~~L~~L~~~~~----------------~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag 108 (219)
T COG4122 45 PETGALLRLLARLSG----------------PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG 108 (219)
T ss_pred hhHHHHHHHHHHhcC----------------CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC
Confidence 888888776665432 56899999999999999999988 8999999999999999999999999
Q ss_pred CCc-EEEEe-cchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 195 ITN-GYFIA-TNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 195 ~~n-v~~~~-~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
+.+ +.++. +|+.+.+.. . ...++|.+++.. + ...|+.+++.+.+.|+|||.+++
T Consensus 109 ~~~~i~~~~~gdal~~l~~-~--~~~~fDliFIDa-d----------K~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 109 VDDRIELLLGGDALDVLSR-L--LDGSFDLVFIDA-D----------KADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred CcceEEEEecCcHHHHHHh-c--cCCCccEEEEeC-C----------hhhCHHHHHHHHHHhCCCcEEEE
Confidence 876 78888 598876544 2 345568777752 1 13568999999999999999998
No 98
>PRK06922 hypothetical protein; Provisional
Probab=99.28 E-value=2.3e-11 Score=120.56 Aligned_cols=113 Identities=14% Similarity=0.232 Sum_probs=83.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
+.+|||+|||+|..+..+++.+|+.+++|+|+|+.|++.|+++....+ .++.++++|+.+. +..+ ++.++|.++..
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g-~~ie~I~gDa~dL-p~~f--edeSFDvVVsn 494 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG-RSWNVIKGDAINL-SSSF--EKESVDTIVYS 494 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-CCeEEEEcchHhC-cccc--CCCCEEEEEEc
Confidence 579999999999999999999999999999999999999998876554 4688899998653 2222 56678877654
Q ss_pred CCCCCCC-----cchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743 227 CPNPDFN-----RPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 263 (336)
Q Consensus 227 ~~dp~~~-----~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~ 263 (336)
++-.+.. ....-......+++++++++|||||.+++.
T Consensus 495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 3221100 000000123468999999999999999994
No 99
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.28 E-value=3.7e-11 Score=111.34 Aligned_cols=128 Identities=11% Similarity=0.087 Sum_probs=85.4
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC-CCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~-~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
++.+|||+|||+|.++..++...+ ..|+|+|.|+.|+.+++...+..+ ..++.+...++.+. . +...+|.++
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l-----p-~~~~FD~V~ 193 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL-----H-ELYAFDTVF 193 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC-----C-CCCCcCEEE
Confidence 357899999999999999988764 379999999999987654332222 24678888887553 1 123467665
Q ss_pred eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC---c---------HHH-----------HHHHHHHHHHcC
Q 019743 225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD---I---------EEV-----------MLRMKQQFLEYG 281 (336)
Q Consensus 225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~---~---------~~~-----------~~~~~~~l~~~g 281 (336)
....-.+. -....+++++++.|+|||.+++++- . ..+ ...+.+.+++.|
T Consensus 194 s~gvL~H~--------~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aG 265 (314)
T TIGR00452 194 SMGVLYHR--------KSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVG 265 (314)
T ss_pred Ecchhhcc--------CCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCC
Confidence 43211110 1123789999999999999998531 0 011 234566778888
Q ss_pred Ccceeee
Q 019743 282 KGKLVLV 288 (336)
Q Consensus 282 ~~~~~~~ 288 (336)
|..+++.
T Consensus 266 F~~V~i~ 272 (314)
T TIGR00452 266 FENFRIL 272 (314)
T ss_pred CeEEEEE
Confidence 8877554
No 100
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.27 E-value=1.1e-10 Score=108.61 Aligned_cols=103 Identities=13% Similarity=0.088 Sum_probs=78.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
..++||||||+|.+++.+++++|+.+++++|. +.+++.|++|+.+.++. +++++.+|+++. + + |++ |.+++
T Consensus 150 ~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~-~--~--~~~--D~v~~ 221 (306)
T TIGR02716 150 VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE-S--Y--PEA--DAVLF 221 (306)
T ss_pred CCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC-C--C--CCC--CEEEe
Confidence 56899999999999999999999999999997 79999999999988875 699999998642 1 2 333 54433
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 263 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~ 263 (336)
...-. ........++++++++.|+|||++++.
T Consensus 222 ~~~lh------~~~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 222 CRILY------SANEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred Ehhhh------cCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 32110 000012247899999999999999883
No 101
>PRK04457 spermidine synthase; Provisional
Probab=99.27 E-value=9.3e-11 Score=106.48 Aligned_cols=109 Identities=12% Similarity=0.143 Sum_probs=83.7
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
..+|||||||+|.++..+++..|+.+++++|+++++++.|+++....+. ++++++.+|+.+.+.. .+..+|.|++
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~----~~~~yD~I~~ 142 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV----HRHSTDVILV 142 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh----CCCCCCEEEE
Confidence 4679999999999999999999999999999999999999998765443 6799999999775432 2334576665
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 263 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~ 263 (336)
...+.. .....+....+++.+.+.|+|||.+++.
T Consensus 143 D~~~~~----~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 143 DGFDGE----GIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred eCCCCC----CCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 422211 0011234579999999999999999983
No 102
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.27 E-value=3.5e-11 Score=110.88 Aligned_cols=101 Identities=11% Similarity=0.086 Sum_probs=76.4
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
..+|||+|||+|..++.+|+. +.+|+|+|+|+.|++.++++++.+++ ++++...|+... + .+..+|.++..
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~-~-----~~~~fD~I~~~ 191 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSA-S-----IQEEYDFILST 191 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcc-c-----ccCCccEEEEc
Confidence 358999999999999999986 68999999999999999999988887 788888887542 1 13445665543
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
+.-.+. .......+++++.++|+|||++++
T Consensus 192 ~vl~~l------~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 192 VVLMFL------NRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred chhhhC------CHHHHHHHHHHHHHhcCCCcEEEE
Confidence 211110 111235899999999999999665
No 103
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.26 E-value=5.4e-11 Score=106.04 Aligned_cols=101 Identities=16% Similarity=0.272 Sum_probs=79.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
..+|||+|||+|.++..+++..|..+++++|+|+.+++.++++.. .++.++.+|+... ..++..+|.++..
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~-----~~~~~~fD~vi~~ 105 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKL-----PLEDSSFDLIVSN 105 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhC-----CCCCCceeEEEEh
Confidence 468999999999999999999999999999999999999987653 4788999998653 1245567877665
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~ 264 (336)
..-.+.. ....++.++.+.|+|||.+++.+
T Consensus 106 ~~l~~~~--------~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 106 LALQWCD--------DLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred hhhhhcc--------CHHHHHHHHHHHcCCCcEEEEEe
Confidence 4332211 12479999999999999999854
No 104
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.26 E-value=8.2e-11 Score=112.28 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=90.7
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
..+|||+|||+|.+++.+|.. ..+++|+|+|+.+++.|++|++.++++|++|+++|+.+.... . ...+|.++++
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~-~---~~~~D~vi~D 307 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA-Q---MSAPELVLVN 307 (374)
T ss_pred CCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh-c---CCCCCEEEEC
Confidence 458999999999999999965 578999999999999999999999988999999999764221 1 1124554443
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 287 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 287 (336)
|... -..+.+++.+. .++|++.+|++++...++..+..+ .||....+
T Consensus 308 ---PPr~-------G~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~~~ 354 (374)
T TIGR02085 308 ---PPRR-------GIGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL---SGYQIERV 354 (374)
T ss_pred ---CCCC-------CCcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh---cCceEEEE
Confidence 3211 12245666664 479999999999888888887766 57776544
No 105
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.25 E-value=4.2e-11 Score=116.19 Aligned_cols=135 Identities=14% Similarity=0.079 Sum_probs=91.6
Q ss_pred CCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH-------HHhhhcCCCC
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST-------FRSIVASYPG 218 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~-------~d~ivsnpp~ 218 (336)
+.+|||+|||+|..+..+|... +..+++|+|+|+.+++.+++|+++.|+++++++++|+... ||.++.+||.
T Consensus 238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPC 317 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPC 317 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCC
Confidence 5689999999999999999875 5689999999999999999999999998899999998642 4555555554
Q ss_pred eEEEEEeeCCCCCCC-cchhhh--hcchHHHHHHHHhcCcCCcEEEEEeCcH---HHHHHHHHHHHHcC
Q 019743 219 KLILVSIQCPNPDFN-RPEHRW--RMVQRSLVEAVSDLLVHDGKVFLQSDIE---EVMLRMKQQFLEYG 281 (336)
Q Consensus 219 ~~d~i~~~~~dp~~~-~~~~~~--~l~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~~~l~~~g 281 (336)
+-....-..|+.... ...... ...+.+++..+.+.|||||.++..|... +.-+.+.+.+..++
T Consensus 318 sg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~ 386 (431)
T PRK14903 318 TSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQK 386 (431)
T ss_pred CCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCC
Confidence 321111111111000 000000 1246789999999999999999977432 22223445555553
No 106
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.25 E-value=3.3e-11 Score=110.19 Aligned_cols=104 Identities=14% Similarity=0.242 Sum_probs=76.8
Q ss_pred CCeEEEEeccccHHHHHHHHhCCC---CeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKD---LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILV 223 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~---~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i 223 (336)
..+|||+|||+|.++..+++..|. ..++|+|+|+.|++.|+++ ..++.+..+|+.+. +.++.++|.+
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~~~l-----p~~~~sfD~I 155 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASSHRL-----PFADQSLDAI 155 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeecccC-----CCcCCceeEE
Confidence 468999999999999999988764 3799999999999999764 25688999987652 1245667877
Q ss_pred EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHH
Q 019743 224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQ 275 (336)
Q Consensus 224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 275 (336)
+..+. | ..++++.++|||||.+++.+.......++.+
T Consensus 156 ~~~~~-~--------------~~~~e~~rvLkpgG~li~~~p~~~~l~el~~ 192 (272)
T PRK11088 156 IRIYA-P--------------CKAEELARVVKPGGIVITVTPGPRHLFELKG 192 (272)
T ss_pred EEecC-C--------------CCHHHHHhhccCCCEEEEEeCCCcchHHHHH
Confidence 65432 2 3357889999999999997654433333333
No 107
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.25 E-value=5.7e-11 Score=115.59 Aligned_cols=135 Identities=13% Similarity=0.187 Sum_probs=91.9
Q ss_pred CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
++.+|||+|||+|..+..+|+.. +..+++|+|+++.+++.+++|++++|++|+.++++|+....+ ....++..+|.++
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~-~~~~~~~~fD~Vl 330 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLE-LKPQWRGYFDRIL 330 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccc-ccccccccCCEEE
Confidence 35789999999999999999875 457999999999999999999999999999999999865310 0000123455555
Q ss_pred eeCCCC----CCCcchhh--------h--hcchHHHHHHHHhcCcCCcEEEEEeCc---HHHHHHHHHHHHHcC
Q 019743 225 IQCPNP----DFNRPEHR--------W--RMVQRSLVEAVSDLLVHDGKVFLQSDI---EEVMLRMKQQFLEYG 281 (336)
Q Consensus 225 ~~~~dp----~~~~~~~~--------~--~l~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~~l~~~g 281 (336)
+.-|-. ..+.+..+ . ...+.+++.++.+.|||||+++..|.. .+..+.+...+++++
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~ 404 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHP 404 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCC
Confidence 432210 00000000 0 112579999999999999999876532 233345556666663
No 108
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.25 E-value=5.9e-11 Score=107.18 Aligned_cols=98 Identities=12% Similarity=0.118 Sum_probs=74.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
..+|||+|||+|.++..+++. ..+++|+|+|+.|++.|+++.. ...++++|+... ..++.++|.++.+
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~-----~~~~~~fD~V~s~ 110 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESL-----PLATATFDLAWSN 110 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccC-----cCCCCcEEEEEEC
Confidence 468999999999999988875 5799999999999999987642 246788887552 1245568877765
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~ 264 (336)
+.-.|.. ....++.++.++|+|||.+++.+
T Consensus 111 ~~l~~~~--------d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 111 LAVQWCG--------NLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred chhhhcC--------CHHHHHHHHHHHcCCCeEEEEEe
Confidence 4333311 23588999999999999999965
No 109
>PRK08317 hypothetical protein; Provisional
Probab=99.24 E-value=4.3e-10 Score=100.08 Aligned_cols=103 Identities=16% Similarity=0.190 Sum_probs=77.8
Q ss_pred CCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
+.+|||+|||+|.++..+++.. |..+++|+|+|+.+++.|+++.. ....++.+...|+... ..++..+|.++.
T Consensus 20 ~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~-~~~~~~~~~~~d~~~~-----~~~~~~~D~v~~ 93 (241)
T PRK08317 20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA-GLGPNVEFVRGDADGL-----PFPDGSFDAVRS 93 (241)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh-CCCCceEEEecccccC-----CCCCCCceEEEE
Confidence 5689999999999999999987 78899999999999999998833 2335789999887542 113455676665
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 263 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~ 263 (336)
...-.+.. ....+++++.+.|+|||.+++.
T Consensus 94 ~~~~~~~~--------~~~~~l~~~~~~L~~gG~l~~~ 123 (241)
T PRK08317 94 DRVLQHLE--------DPARALAEIARVLRPGGRVVVL 123 (241)
T ss_pred echhhccC--------CHHHHHHHHHHHhcCCcEEEEE
Confidence 42211110 1247899999999999999874
No 110
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.23 E-value=7.4e-11 Score=115.19 Aligned_cols=129 Identities=17% Similarity=0.057 Sum_probs=89.8
Q ss_pred CCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
+.+|||+|||+|..+..+++.. +..+++|+|+|+.+++.+++|+++.|++++.++++|+.... ++..+|.+++
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~------~~~~fD~Vl~ 324 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS------PEEQPDAILL 324 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc------cCCCCCEEEE
Confidence 5689999999999999998864 45799999999999999999999999989999999986531 2233455444
Q ss_pred eCC-----------CC-CCCcchhh--hhcchHHHHHHHHhcCcCCcEEEEEeCcH---HHHHHHHHHHHHcC
Q 019743 226 QCP-----------NP-DFNRPEHR--WRMVQRSLVEAVSDLLVHDGKVFLQSDIE---EVMLRMKQQFLEYG 281 (336)
Q Consensus 226 ~~~-----------dp-~~~~~~~~--~~l~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~~~l~~~g 281 (336)
..| +. |......- -...+.+++..+.+.|+|||++++.|... +..+.+...++.++
T Consensus 325 D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~ 397 (445)
T PRK14904 325 DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHP 397 (445)
T ss_pred cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCC
Confidence 322 11 10000000 01135689999999999999999977432 22234455666653
No 111
>PRK00811 spermidine synthase; Provisional
Probab=99.23 E-value=1.9e-10 Score=105.68 Aligned_cols=112 Identities=16% Similarity=0.177 Sum_probs=88.2
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC-----CCcEEEEecchhHHHHhhhcCCCCeE
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-----ITNGYFIATNATSTFRSIVASYPGKL 220 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~-----~~nv~~~~~d~~~~~d~ivsnpp~~~ 220 (336)
+..+||+||||+|.++..+++..+..+++++|+++.+++.|+++....+ -.+++++.+|+...+. +++..+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~----~~~~~y 151 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA----ETENSF 151 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh----hCCCcc
Confidence 3568999999999999999876556799999999999999999876432 2469999999987532 245567
Q ss_pred EEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743 221 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 265 (336)
Q Consensus 221 d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~ 265 (336)
|.|++..++|+.. ...+..+.|++.+.+.|+|||.+++...
T Consensus 152 DvIi~D~~dp~~~----~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 152 DVIIVDSTDPVGP----AEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred cEEEECCCCCCCc----hhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 8888877777521 1235567999999999999999998643
No 112
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.23 E-value=1.7e-10 Score=107.74 Aligned_cols=128 Identities=16% Similarity=0.194 Sum_probs=87.5
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC-CCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~-~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
.+.+|||||||+|.++..++...+. .|+|+|.|+.++..++......+ ..++.++.+|+.+. + .+..+|.++
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-----p-~~~~FD~V~ 194 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-----P-ALKAFDTVF 194 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-----C-CcCCcCEEE
Confidence 3578999999999999999998654 59999999999876654433322 24799999988653 1 134467665
Q ss_pred eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc------------HHH-----------HHHHHHHHHHcC
Q 019743 225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI------------EEV-----------MLRMKQQFLEYG 281 (336)
Q Consensus 225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~------------~~~-----------~~~~~~~l~~~g 281 (336)
....-. |. .....+++++++.|+|||.+++++-. ..| ...+.+.+++.|
T Consensus 195 s~~vl~------H~--~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aG 266 (322)
T PRK15068 195 SMGVLY------HR--RSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAG 266 (322)
T ss_pred ECChhh------cc--CCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcC
Confidence 431111 10 12248899999999999999985310 011 234677788888
Q ss_pred Ccceeee
Q 019743 282 KGKLVLV 288 (336)
Q Consensus 282 ~~~~~~~ 288 (336)
|..+++.
T Consensus 267 F~~i~~~ 273 (322)
T PRK15068 267 FKDVRIV 273 (322)
T ss_pred CceEEEE
Confidence 8876554
No 113
>PTZ00146 fibrillarin; Provisional
Probab=99.23 E-value=1.9e-10 Score=104.60 Aligned_cols=129 Identities=12% Similarity=0.068 Sum_probs=87.8
Q ss_pred CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
+..+|||+|||+|.++..+|... +...|+++|+|+.|++...+.++. ..|+.++..|+..... ...+...+|.++
T Consensus 132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~--r~NI~~I~~Da~~p~~--y~~~~~~vDvV~ 207 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK--RPNIVPIIEDARYPQK--YRMLVPMVDVIF 207 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh--cCCCEEEECCccChhh--hhcccCCCCEEE
Confidence 35789999999999999999985 567999999999876555544432 2689999999854211 111233578877
Q ss_pred eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC-----c----HHHHHHHHHHHHHcCCcceeee
Q 019743 225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-----I----EEVMLRMKQQFLEYGKGKLVLV 288 (336)
Q Consensus 225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~-----~----~~~~~~~~~~l~~~g~~~~~~~ 288 (336)
+....|+ ..+.++.++.++|||||.+++... . ...+.+-.+.|++.+|...+..
T Consensus 208 ~Dva~pd----------q~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v 270 (293)
T PTZ00146 208 ADVAQPD----------QARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQL 270 (293)
T ss_pred EeCCCcc----------hHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 7665443 223566789999999999998421 1 1111122377888899866543
No 114
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.22 E-value=4.8e-10 Score=107.34 Aligned_cols=133 Identities=12% Similarity=0.124 Sum_probs=87.6
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC--cEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~--nv~~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
+.+|||+|||||.+++.++.. ...+++++|+|+.+++.|++|++.++++ +++++++|+.+.+..... ....+|.++
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~-~~~~fDlVi 298 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD-RGEKFDVIV 298 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHh-cCCCCCEEE
Confidence 568999999999999887754 3458999999999999999999999974 799999999764322110 112244444
Q ss_pred eeCCCCCCCcchh---hhhcchHHHHHHHHhcCcCCcEEEEEeCc-----HHHHHHHHHHHHHcCCc
Q 019743 225 IQCPNPDFNRPEH---RWRMVQRSLVEAVSDLLVHDGKVFLQSDI-----EEVMLRMKQQFLEYGKG 283 (336)
Q Consensus 225 ~~~~dp~~~~~~~---~~~l~~~~~l~~~~~~LkpgG~l~~~~~~-----~~~~~~~~~~l~~~g~~ 283 (336)
++.|- +..... .....+..++..+.++|+|||.+++.+.. ....+.+.+.....+..
T Consensus 299 lDPP~--f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~ 363 (396)
T PRK15128 299 MDPPK--FVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRD 363 (396)
T ss_pred ECCCC--CCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCe
Confidence 33211 111100 01123678889999999999999874432 22333444445555543
No 115
>PRK01581 speE spermidine synthase; Validated
Probab=99.21 E-value=3.4e-10 Score=105.63 Aligned_cols=133 Identities=17% Similarity=0.169 Sum_probs=97.3
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHH--H---Hh--CCCcEEEEecchhHHHHhhhcCCCC
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSL--Q---LS--GITNGYFIATNATSTFRSIVASYPG 218 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~--~---~~--~~~nv~~~~~d~~~~~d~ivsnpp~ 218 (336)
+..+||+||||+|..+..+++..+..+++++|+++++++.|++.. . +. .-++++++.+|+.+.+.. .+.
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~----~~~ 225 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS----PSS 225 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh----cCC
Confidence 356899999999998888887666789999999999999999621 1 11 235799999999875432 344
Q ss_pred eEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHH----HHHHHHHHHcCCcce
Q 019743 219 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM----LRMKQQFLEYGKGKL 285 (336)
Q Consensus 219 ~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~----~~~~~~l~~~g~~~~ 285 (336)
.+|.|++..++|... ...++....|++.+.+.|+|||.+++........ ..+.+.+.+.++...
T Consensus 226 ~YDVIIvDl~DP~~~---~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~ 293 (374)
T PRK01581 226 LYDVIIIDFPDPATE---LLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVK 293 (374)
T ss_pred CccEEEEcCCCcccc---chhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceE
Confidence 578888888887521 1234566899999999999999998865533222 345666777766543
No 116
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=1.5e-10 Score=97.33 Aligned_cols=119 Identities=13% Similarity=0.205 Sum_probs=83.5
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH---HHhhhcCCCCeEEE
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST---FRSIVASYPGKLIL 222 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~---~d~ivsnpp~~~d~ 222 (336)
++..|+|+|||||.+++..+...| .+|+|+|+++++++.+++|+.+ ...++.|+.+|+.+. +|.++-|||+-.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~~~~~dtvimNPPFG~-- 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDFRGKFDTVIMNPPFGS-- 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhcCCccceEEECCCCcc--
Confidence 356799999999999999988764 6899999999999999999988 456899999999763 555566666532
Q ss_pred EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743 223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 287 (336)
Q Consensus 223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 287 (336)
...|.++ .|+..+.+.- -.+|=.+ .....+.+.+...+.|+.....
T Consensus 121 -----------~~rhaDr----~Fl~~Ale~s---~vVYsiH-~a~~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 121 -----------QRRHADR----PFLLKALEIS---DVVYSIH-KAGSRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred -----------ccccCCH----HHHHHHHHhh---heEEEee-ccccHHHHHHHHHhcCCeEEEE
Confidence 1222333 4444443332 2333323 3345667788888899876544
No 117
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.20 E-value=7.3e-12 Score=110.13 Aligned_cols=104 Identities=17% Similarity=0.252 Sum_probs=73.3
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC------cEEEEecchhHHHHhhhcCCCCeE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT------NGYFIATNATSTFRSIVASYPGKL 220 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~------nv~~~~~d~~~~~d~ivsnpp~~~ 220 (336)
+.+|||+|||+|.++..||+. .++|+|||++++|++.|++.....-.. .+.+.+.|+...- +. +
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~------~~--f 159 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT------GK--F 159 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc------cc--c
Confidence 467999999999999999998 689999999999999999995433221 2556666665420 11 4
Q ss_pred EEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH
Q 019743 221 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE 268 (336)
Q Consensus 221 d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~ 268 (336)
|.+.... . .+|- ..-+.|+..+.+.|||||.+++.+-+..
T Consensus 160 DaVvcse--v----leHV--~dp~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 160 DAVVCSE--V----LEHV--KDPQEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred ceeeeHH--H----HHHH--hCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence 5443321 0 0000 0124899999999999999999775544
No 118
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.20 E-value=2.7e-10 Score=97.85 Aligned_cols=103 Identities=11% Similarity=0.155 Sum_probs=74.7
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
..++||||||.|..++.||++ +..|+++|+|+.+++.+++.+++.+++ ++....|+.+. + ++..+|.|+..
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~-~-----~~~~yD~I~st 101 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDF-D-----FPEEYDFIVST 101 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCB-S------TTTEEEEEEE
T ss_pred CCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhc-c-----ccCCcCEEEEE
Confidence 578999999999999999999 789999999999999999988888876 88899987652 1 23344554321
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~ 264 (336)
.. .++-.+...+++++.+...++|||.+++.+
T Consensus 102 ~v------~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 102 VV------FMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp SS------GGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EE------eccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 10 011112345789999999999999988844
No 119
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.19 E-value=1.5e-10 Score=112.47 Aligned_cols=135 Identities=15% Similarity=0.176 Sum_probs=89.4
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhH--------HHHhhhcCCC
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATS--------TFRSIVASYP 217 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~--------~~d~ivsnpp 217 (336)
+.+|||+|||+|..+..+++..++.+++|+|+|+.+++.+++|+++.|++ ++.+..+|... .||.++.+||
T Consensus 239 g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaP 318 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAP 318 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcCC
Confidence 57899999999999999999887789999999999999999999998876 23446666532 1444554444
Q ss_pred CeEEEEEeeCCCC-CCCcchh--hhhcchHHHHHHHHhcCcCCcEEEEEeCcH---HHHHHHHHHHHHcC
Q 019743 218 GKLILVSIQCPNP-DFNRPEH--RWRMVQRSLVEAVSDLLVHDGKVFLQSDIE---EVMLRMKQQFLEYG 281 (336)
Q Consensus 218 ~~~d~i~~~~~dp-~~~~~~~--~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~~~l~~~g 281 (336)
.+-..+.-..|+. |....+. .-...+.+++..+.++|||||+++..|-.. +....+...+++++
T Consensus 319 cSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~ 388 (426)
T TIGR00563 319 CSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHP 388 (426)
T ss_pred CCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCC
Confidence 4322211122221 1111110 011235789999999999999999865332 22334555666654
No 120
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.19 E-value=2.5e-10 Score=105.85 Aligned_cols=112 Identities=11% Similarity=0.094 Sum_probs=76.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHhC-CCcEEEEecchhHHHHhhhcCCCC-eEEEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYFIATNATSTFRSIVASYPG-KLILV 223 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~~-~~nv~~~~~d~~~~~d~ivsnpp~-~~d~i 223 (336)
...|||+|||||..+..|++..+ ..+++|+|+|++|++.|++++.... .-++.++++|+.+.++.. .+... ....+
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~-~~~~~~~~~~~ 142 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP-PEPAAGRRLGF 142 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh-cccccCCeEEE
Confidence 46799999999999999998876 5899999999999999999986543 124778899987543221 11100 11112
Q ss_pred EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743 224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 265 (336)
Q Consensus 224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~ 265 (336)
+......++. ......+++++++.|+|||.+++-.+
T Consensus 143 ~~gs~~~~~~------~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 143 FPGSTIGNFT------PEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred EecccccCCC------HHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 2111111111 11235899999999999999998554
No 121
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.19 E-value=3.3e-10 Score=101.00 Aligned_cols=103 Identities=17% Similarity=0.234 Sum_probs=78.3
Q ss_pred CCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
..+|||+|||+|.++..+++..| +.+++++|+++.+++.|++++..++. .++.+..+|+.+. ..++..+|.++
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D~I~ 126 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL-----PFPDNSFDAVT 126 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC-----CCCCCCccEEE
Confidence 46899999999999999999887 78999999999999999999876544 4688999988653 11334566655
Q ss_pred eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
..+.-.+. .....+++.+.+.|+|||.+++
T Consensus 127 ~~~~l~~~--------~~~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 127 IAFGLRNV--------PDIDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred EecccccC--------CCHHHHHHHHHHhccCCcEEEE
Confidence 43211110 1135889999999999999877
No 122
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.18 E-value=6.1e-10 Score=99.73 Aligned_cols=124 Identities=15% Similarity=0.149 Sum_probs=97.3
Q ss_pred cccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHH
Q 019743 112 VDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSL 190 (336)
Q Consensus 112 ~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~ 190 (336)
+-++|++.......++... ..+||||||++|..++++|+.. ++.+++.+|++++..+.|++++
T Consensus 61 ~~~~~~~g~lL~~l~~~~~----------------ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~ 124 (247)
T PLN02589 61 MTTSADEGQFLNMLLKLIN----------------AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVI 124 (247)
T ss_pred CccCHHHHHHHHHHHHHhC----------------CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHH
Confidence 4557888777766655322 5689999999999999999875 5789999999999999999999
Q ss_pred HHhCC-CcEEEEecchhHHHHhhhcCC--CCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 191 QLSGI-TNGYFIATNATSTFRSIVASY--PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 191 ~~~~~-~nv~~~~~d~~~~~d~ivsnp--p~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
++.|+ .+++++.+|+.+.++....+. +..+|.+++. .+ ...|..+++.+.+.|+|||.+++
T Consensus 125 ~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiD---ad--------K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 125 QKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVD---AD--------KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred HHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEec---CC--------HHHhHHHHHHHHHhcCCCeEEEE
Confidence 99996 469999999998776654321 2357877665 21 12456888888999999999887
No 123
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.18 E-value=3.5e-10 Score=99.59 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=76.8
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
..+|||+|||+|.++..+++.. .+++++|+++++++.|+++++++++.++.+.++|..+.+ . +...+|.+++.
T Consensus 79 ~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----~-~~~~fD~I~~~ 151 (212)
T PRK00312 79 GDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW----P-AYAPFDRILVT 151 (212)
T ss_pred CCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC----C-cCCCcCEEEEc
Confidence 5789999999999999888874 479999999999999999999989889999999975421 1 12346776665
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 265 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~ 265 (336)
..-+ .+.+.+.+.|+|||.+++...
T Consensus 152 ~~~~--------------~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 152 AAAP--------------EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred cCch--------------hhhHHHHHhcCCCcEEEEEEc
Confidence 3221 334567789999999999765
No 124
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.18 E-value=4.5e-10 Score=104.89 Aligned_cols=122 Identities=16% Similarity=0.164 Sum_probs=89.1
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
..+|||+|||+|.+++.+|+. ..+++|+|+|+.|++.|++|++.++++|++|+++|+.+.... +...+|.++++
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~----~~~~~D~Vv~d 247 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA----QGEVPDLVLVN 247 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh----cCCCCeEEEEC
Confidence 468999999999999999985 579999999999999999999999998999999999764221 12345766655
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeee
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLV 288 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 288 (336)
-| . . -....+++.+ ..+.|++.+|+.++....++.+..+ .||....+.
T Consensus 248 PP--r-~-------G~~~~~~~~l-~~~~~~~ivyvsc~p~t~~rd~~~l---~~y~~~~~~ 295 (315)
T PRK03522 248 PP--R-R-------GIGKELCDYL-SQMAPRFILYSSCNAQTMAKDLAHL---PGYRIERVQ 295 (315)
T ss_pred CC--C-C-------CccHHHHHHH-HHcCCCeEEEEECCcccchhHHhhc---cCcEEEEEE
Confidence 22 1 0 1112343333 3478899999988877777776554 477655443
No 125
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.17 E-value=1e-09 Score=106.82 Aligned_cols=126 Identities=19% Similarity=0.259 Sum_probs=90.6
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
..+|||+|||+|.+++.+|+.. .+++|+|+++.|++.|++|++.+++.|++|+++|+.+.+.... .....+|.+++.
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~-~~~~~~D~vi~d 369 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQP-WAGQIPDVLLLD 369 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHH-hcCCCCCEEEEC
Confidence 4689999999999999999874 5899999999999999999999999999999999976433211 012235665544
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 287 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 287 (336)
.|-. -....+++.+.+ |+|++.+|+.++...+...+ +.|.+.||....+
T Consensus 370 PPr~----------G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~-~~l~~~gy~~~~~ 418 (431)
T TIGR00479 370 PPRK----------GCAAEVLRTIIE-LKPERIVYVSCNPATLARDL-EFLCKEGYGITWV 418 (431)
T ss_pred cCCC----------CCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHH-HHHHHCCeeEEEE
Confidence 2210 123466666554 89999999987765544444 4456677865443
No 126
>PLN03075 nicotianamine synthase; Provisional
Probab=99.17 E-value=3.1e-10 Score=103.56 Aligned_cols=107 Identities=10% Similarity=0.108 Sum_probs=78.0
Q ss_pred CCeEEEEeccccHH-HHHH-HHhCCCCeEEEEecChHHHHHHHHHHHH-hCCC-cEEEEecchhHHHHhhhcCCCCeEEE
Q 019743 147 QPLVVDIGSGNGLF-LLGM-ARKRKDLNFLGLEVNGKLVTHCRDSLQL-SGIT-NGYFIATNATSTFRSIVASYPGKLIL 222 (336)
Q Consensus 147 ~~~vLDiGcGsG~~-~~~l-a~~~p~~~v~giDis~~~l~~a~~n~~~-~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~ 222 (336)
..+|+|||||.|-+ ++.+ +...|+.+++|+|+++++++.|++++.. .++. +++|..+|+.+... +...+|.
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~-----~l~~FDl 198 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE-----SLKEYDV 198 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc-----ccCCcCE
Confidence 56899999997744 3333 4567999999999999999999999964 5664 59999999876310 1134676
Q ss_pred EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743 223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 265 (336)
Q Consensus 223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~ 265 (336)
+++...-.|. +....++++.+.+.|+|||.+++.+.
T Consensus 199 VF~~ALi~~d-------k~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 199 VFLAALVGMD-------KEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred EEEecccccc-------cccHHHHHHHHHHhcCCCcEEEEecc
Confidence 6655211110 01335899999999999999999763
No 127
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.17 E-value=9.5e-11 Score=103.09 Aligned_cols=103 Identities=16% Similarity=0.064 Sum_probs=69.9
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHH------------hCCCcEEEEecchhHHHHhhhc
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL------------SGITNGYFIATNATSTFRSIVA 214 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~------------~~~~nv~~~~~d~~~~~d~ivs 214 (336)
+.+|||+|||+|..++.||.+ +.+|+|+|+|+.+++.+.+.... ....+++++++|+++. +.-.
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~-~~~~- 110 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL-TAAD- 110 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCC-Cccc-
Confidence 569999999999999999987 78999999999999986442210 0123688999998663 1100
Q ss_pred CCCC--eEEEEEe-eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743 215 SYPG--KLILVSI-QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 215 npp~--~~d~i~~-~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~ 264 (336)
++++ .+|...+ .+| | ...+++++.+.+.|+|||++++.+
T Consensus 111 ~~~fD~i~D~~~~~~l~-~----------~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 111 LGPVDAVYDRAALIALP-E----------EMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred CCCcCEEEechhhccCC-H----------HHHHHHHHHHHHHcCCCCeEEEEE
Confidence 1222 2332211 111 1 134579999999999999876643
No 128
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.16 E-value=3.3e-10 Score=97.85 Aligned_cols=132 Identities=13% Similarity=0.084 Sum_probs=83.3
Q ss_pred CCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH--HHhhhc-CCCCeEEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST--FRSIVA-SYPGKLIL 222 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~--~d~ivs-npp~~~d~ 222 (336)
+.+|||+|||+|.++..++++. +..+++|+|+|+.+ ...++.++++|+.+. .+.+.. -++..+|.
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~ 101 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDV 101 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCccE
Confidence 6789999999999999998875 56789999999864 235678888887542 111111 13445677
Q ss_pred EEeeCCCCC---CCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeecc
Q 019743 223 VSIQCPNPD---FNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQD 290 (336)
Q Consensus 223 i~~~~~dp~---~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d 290 (336)
++...+.+. +...+.......+.++..+.++|+|||+++++.........+.+.+.. .|....+.+|
T Consensus 102 V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~-~~~~~~~~~~ 171 (188)
T TIGR00438 102 VMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK-LFEKVKVTKP 171 (188)
T ss_pred EEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh-hhceEEEeCC
Confidence 665432110 001111111224688999999999999999965433334445555444 3555555555
No 129
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.16 E-value=4e-10 Score=104.82 Aligned_cols=100 Identities=17% Similarity=0.185 Sum_probs=77.0
Q ss_pred CCeEEEEeccccHHHHHHHHhCCC-CeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~-~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
+.+|||||||+|.++..+|+..+. ..|+++|+++++++.|+++++.++.+|+.++++|+..... +...+|.+++
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~-----~~~~fD~Ii~ 155 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP-----EFAPYDVIFV 155 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc-----ccCCccEEEE
Confidence 578999999999999999998753 5799999999999999999999999899999999765311 1123576665
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 265 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~ 265 (336)
....+ .+...+.+.|+|||.+++..+
T Consensus 156 ~~g~~--------------~ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 156 TVGVD--------------EVPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred CCchH--------------HhHHHHHHhcCCCCEEEEEeC
Confidence 42211 233456678999999988653
No 130
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.15 E-value=1.7e-09 Score=102.81 Aligned_cols=123 Identities=15% Similarity=0.183 Sum_probs=91.1
Q ss_pred CeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCC-----------
Q 019743 148 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASY----------- 216 (336)
Q Consensus 148 ~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnp----------- 216 (336)
.++||++||+|.+++.+++.. .+|+|+|+|+.|++.|++|+..++++|++|+++|+.+.+.......
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 285 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK 285 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence 469999999999999999875 4899999999999999999999999999999999987654332111
Q ss_pred CCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743 217 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 287 (336)
Q Consensus 217 p~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 287 (336)
...+|.+++ ||... -..+++++.+.+ |++.+|++++...++..+..+. + ||....+
T Consensus 286 ~~~~D~v~l---DPPR~-------G~~~~~l~~l~~---~~~ivyvSC~p~tlarDl~~L~-~-gY~l~~v 341 (362)
T PRK05031 286 SYNFSTIFV---DPPRA-------GLDDETLKLVQA---YERILYISCNPETLCENLETLS-Q-THKVERF 341 (362)
T ss_pred CCCCCEEEE---CCCCC-------CCcHHHHHHHHc---cCCEEEEEeCHHHHHHHHHHHc-C-CcEEEEE
Confidence 112465544 44311 234566666654 7999999998877777777654 3 7775544
No 131
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.14 E-value=6e-10 Score=97.86 Aligned_cols=131 Identities=13% Similarity=0.142 Sum_probs=82.7
Q ss_pred CCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH--HHhhhc-CCCCeEEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST--FRSIVA-SYPGKLIL 222 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~--~d~ivs-npp~~~d~ 222 (336)
+.+|||||||+|.++..+++.. +..+|+|+|+++ | +...++.++++|+... ++.+.. .++..+|.
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~ 120 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQV 120 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCE
Confidence 5689999999999999999885 567999999998 1 1345799999998752 222211 13445676
Q ss_pred EEeeCCCCCCC-cc--hh-hhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeecc
Q 019743 223 VSIQCPNPDFN-RP--EH-RWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQD 290 (336)
Q Consensus 223 i~~~~~dp~~~-~~--~~-~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d 290 (336)
+..++ .|.+. .. .. ........+++.+.++|+|||.+++.+-.......+...+. ..|...++.+|
T Consensus 121 V~S~~-~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~-~~f~~v~~~Kp 190 (209)
T PRK11188 121 VMSDM-APNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIR-SLFTKVKVRKP 190 (209)
T ss_pred EecCC-CCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHH-hCceEEEEECC
Confidence 66543 12111 00 00 00111357899999999999999995422121222222222 36887777776
No 132
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.14 E-value=1e-09 Score=96.74 Aligned_cols=102 Identities=15% Similarity=0.208 Sum_probs=77.9
Q ss_pred CCeEEEEeccccHHHHHHHHhCCC-CeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~-~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
+.+|||+|||+|.++..+++..|. .+++++|+++.+++.++++.. ...++.+..+|+.+. . + ++..+|.++.
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~-~--~--~~~~~D~i~~ 112 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEAL-P--F--EDNSFDAVTI 112 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcC-C--C--CCCcEEEEEE
Confidence 578999999999999999999876 799999999999999998875 335788999998653 1 2 3345676655
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 263 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~ 263 (336)
.+...+. .....+++.+.+.|+|||++++.
T Consensus 113 ~~~~~~~--------~~~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 113 AFGLRNV--------TDIQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred eeeeCCc--------ccHHHHHHHHHHHcCCCcEEEEE
Confidence 4321111 12348899999999999999873
No 133
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=9.4e-10 Score=94.87 Aligned_cols=98 Identities=20% Similarity=0.278 Sum_probs=76.6
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
+.+|||||||||..+.-||+.. .+|+.+|+.++..+.|++|++..|..||.+.++|...-+.. -.|| |.|++.
T Consensus 73 g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~---~aPy--D~I~Vt 145 (209)
T COG2518 73 GDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPE---EAPY--DRIIVT 145 (209)
T ss_pred CCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCC---CCCc--CEEEEe
Confidence 6799999999999999999985 49999999999999999999999999999999998653211 1344 666554
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 265 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~ 265 (336)
-.-+. +=+.+.+.|++||++++..+
T Consensus 146 aaa~~--------------vP~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 146 AAAPE--------------VPEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred eccCC--------------CCHHHHHhcccCCEEEEEEc
Confidence 32221 11334467999999999776
No 134
>PRK03612 spermidine synthase; Provisional
Probab=99.13 E-value=9.3e-10 Score=109.32 Aligned_cols=130 Identities=15% Similarity=0.182 Sum_probs=96.7
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHH--HHh-----CCCcEEEEecchhHHHHhhhcCCCC
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSL--QLS-----GITNGYFIATNATSTFRSIVASYPG 218 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~--~~~-----~~~nv~~~~~d~~~~~d~ivsnpp~ 218 (336)
+..+|||||||+|..+..+++..+..+++++|+++++++.|+++. ... .-++++++.+|+.+.+.. .+.
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~----~~~ 372 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK----LAE 372 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh----CCC
Confidence 356899999999999999887533379999999999999999853 211 124699999999875332 244
Q ss_pred eEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC----cHHHHHHHHHHHHHcCC
Q 019743 219 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD----IEEVMLRMKQQFLEYGK 282 (336)
Q Consensus 219 ~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~----~~~~~~~~~~~l~~~g~ 282 (336)
.+|.|.+++++|+... ..++..+++++.+.+.|+|||.+++.+. .......+.+.+++.||
T Consensus 373 ~fDvIi~D~~~~~~~~---~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 373 KFDVIIVDLPDPSNPA---LGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred CCCEEEEeCCCCCCcc---hhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence 6788888877775211 1335678899999999999999998543 13334567778888888
No 135
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.11 E-value=1.2e-09 Score=96.62 Aligned_cols=150 Identities=15% Similarity=0.115 Sum_probs=94.8
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
..+|||+|||+|.++..+++. ..+++|+|+|++|++.|++++...+. .++.+.++|+... +..+|.++.
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--------~~~fD~ii~ 125 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL--------CGEFDIVVC 125 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC--------CCCcCEEEE
Confidence 578999999999999999876 56899999999999999999887765 4799999998653 234555443
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeeccccccccCCCCCCCCC
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGEN 305 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~~~~~~~~~ 305 (336)
...-.+.. ......+++.+.+.+++++.+.+.. ... .......+... +... .. ....
T Consensus 126 ~~~l~~~~------~~~~~~~l~~i~~~~~~~~~i~~~~-~~~-~~~~~~~~~~~-~~~~---~~-----------~~~~ 182 (219)
T TIGR02021 126 MDVLIHYP------ASDMAKALGHLASLTKERVIFTFAP-KTA-WLAFLKMIGEL-FPGS---SR-----------ATSA 182 (219)
T ss_pred hhHHHhCC------HHHHHHHHHHHHHHhCCCEEEEECC-Cch-HHHHHHHHHhh-CcCc---cc-----------ccce
Confidence 21111100 0112467888888888777666532 212 22222222221 1100 00 0001
Q ss_pred CCCCCCHHHHHHHHcCCCeEEEEE
Q 019743 306 SFGVRSDWEQHVIDRGAPMYRLML 329 (336)
Q Consensus 306 ~~~~~t~~e~~~~~~G~~i~~~~~ 329 (336)
-.....+++..+...|+.+.....
T Consensus 183 ~~~~~~~~~~~l~~~Gf~v~~~~~ 206 (219)
T TIGR02021 183 YLHPMTDLERALGELGWKIVREGL 206 (219)
T ss_pred EEecHHHHHHHHHHcCceeeeeec
Confidence 113457899999999998877653
No 136
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.11 E-value=6.2e-10 Score=94.79 Aligned_cols=119 Identities=12% Similarity=0.171 Sum_probs=81.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
-.++||+|||.|.++..||.++ .+++++|+|+.+++.|+++.. +.+||.|.+.|+.+. . |+..||.+++.
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~--~~~~V~~~~~dvp~~----~--P~~~FDLIV~S 113 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLA--GLPHVEWIQADVPEF----W--PEGRFDLIVLS 113 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTT--T-SSEEEEES-TTT---------SS-EEEEEEE
T ss_pred cceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcC--CCCCeEEEECcCCCC----C--CCCCeeEEEEe
Confidence 3579999999999999999996 579999999999999999876 457999999998663 1 67788887764
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH---------HHHHHHHHHHHHc
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE---------EVMLRMKQQFLEY 280 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~---------~~~~~~~~~l~~~ 280 (336)
----+.. .....+.++..+...|+|||.+++-+-.. .-++.+.++|.+.
T Consensus 114 EVlYYL~-----~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~ 171 (201)
T PF05401_consen 114 EVLYYLD-----DAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEH 171 (201)
T ss_dssp S-GGGSS-----SHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHH
T ss_pred hHhHcCC-----CHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHH
Confidence 1111100 01123578899999999999999965221 1245677777665
No 137
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.10 E-value=3.7e-10 Score=95.86 Aligned_cols=68 Identities=19% Similarity=0.290 Sum_probs=56.7
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH------HHhhhcCCCC
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST------FRSIVASYPG 218 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~------~d~ivsnpp~ 218 (336)
+.++||||||+|.++..++++ ..+++|+|+++.+++.+++++.. ..|++++++|+.+. +|.+++||||
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py 87 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQPYKVVGNLPY 87 (169)
T ss_pred cCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCCCEEEECCCc
Confidence 568999999999999999988 57899999999999999998753 45899999999753 4555566555
No 138
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.09 E-value=6.3e-10 Score=106.35 Aligned_cols=100 Identities=17% Similarity=0.149 Sum_probs=73.4
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
+.+|||||||+|.++..+|+.. +++|+|+|+|+++++.|++++. +. ++++...|.... +..+|.++..
T Consensus 168 g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l--------~~~fD~Ivs~ 235 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDL--------NGQFDRIVSV 235 (383)
T ss_pred CCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhc--------CCCCCEEEEe
Confidence 5789999999999999999876 6799999999999999999874 33 478888886542 2334554332
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~ 264 (336)
..-.+ -....++.+++++.++|||||.+++.+
T Consensus 236 ~~~eh------vg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 236 GMFEH------VGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred Cchhh------CChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 11011 011124589999999999999999843
No 139
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.09 E-value=7.5e-10 Score=96.88 Aligned_cols=101 Identities=19% Similarity=0.265 Sum_probs=76.0
Q ss_pred CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743 146 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
.+.+|||||||||..+..||+. .+...|+++|+++..++.|++|++..+..|+.++++|...-+. ...| +|.|+
T Consensus 72 pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~---~~ap--fD~I~ 146 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP---EEAP--FDRII 146 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG---GG-S--EEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc---cCCC--cCEEE
Confidence 3689999999999999999987 4566899999999999999999999999999999999865321 1123 58877
Q ss_pred eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743 225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 265 (336)
Q Consensus 225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~ 265 (336)
+...-+ ++-..+.+.|++||++++...
T Consensus 147 v~~a~~--------------~ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 147 VTAAVP--------------EIPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp ESSBBS--------------S--HHHHHTEEEEEEEEEEES
T ss_pred Eeeccc--------------hHHHHHHHhcCCCcEEEEEEc
Confidence 754322 122445567999999999765
No 140
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.09 E-value=7.5e-10 Score=94.96 Aligned_cols=124 Identities=18% Similarity=0.227 Sum_probs=84.8
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
...|||||||||..+..|... +..++|+|||+.|+++|.+.-- + -.++.+|+-+- +..+|+.||.+..-
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~----e-gdlil~DMG~G----lpfrpGtFDg~ISI 119 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVEREL----E-GDLILCDMGEG----LPFRPGTFDGVISI 119 (270)
T ss_pred CcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhh----h-cCeeeeecCCC----CCCCCCccceEEEe
Confidence 568999999999998888655 6889999999999999987321 1 24667777542 23367777754322
Q ss_pred CCCCCCCc-----chhhhhcchHHHHHHHHhcCcCCcEEEEEe--CcHHHHHHHHHHHHHcCCc
Q 019743 227 CPNPDFNR-----PEHRWRMVQRSLVEAVSDLLVHDGKVFLQS--DIEEVMLRMKQQFLEYGKG 283 (336)
Q Consensus 227 ~~dp~~~~-----~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~~~~~~l~~~g~~ 283 (336)
..-.|.-. -+++.|+ ..|+..++.+|++|++..++. .+..+.+.+.+.....||.
T Consensus 120 SAvQWLcnA~~s~~~P~~Rl--~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~ 181 (270)
T KOG1541|consen 120 SAVQWLCNADKSLHVPKKRL--LRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFG 181 (270)
T ss_pred eeeeeecccCccccChHHHH--HHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccC
Confidence 11122111 1123344 389999999999999999955 2345666777777777764
No 141
>PLN02366 spermidine synthase
Probab=99.09 E-value=3.3e-09 Score=98.22 Aligned_cols=113 Identities=14% Similarity=0.174 Sum_probs=88.0
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC--C--CcEEEEecchhHHHHhhhcCCCCeEE
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG--I--TNGYFIATNATSTFRSIVASYPGKLI 221 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~--~--~nv~~~~~d~~~~~d~ivsnpp~~~d 221 (336)
+..+||+||||.|.++..+++..+..+++.+|+++.+++.|++.....+ . ++++++.+|+...+.. .++..+|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~---~~~~~yD 167 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN---APEGTYD 167 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhh---ccCCCCC
Confidence 3578999999999999999876445789999999999999999875432 2 4699999999775432 1345578
Q ss_pred EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743 222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 265 (336)
Q Consensus 222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~ 265 (336)
.|++..++|+. +...+..+.|++.+.+.|+|||.+.....
T Consensus 168 vIi~D~~dp~~----~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 168 AIIVDSSDPVG----PAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred EEEEcCCCCCC----chhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 88887777752 22346678999999999999999987443
No 142
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.09 E-value=8.1e-09 Score=89.22 Aligned_cols=109 Identities=15% Similarity=0.123 Sum_probs=77.7
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
+.++||++||||.+++.++.+.. ..++++|+++.+++.+++|++.++.. +++++++|+...+..... ....+|.++
T Consensus 50 g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~-~~~~~dvv~- 126 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK-KPTFDNVIY- 126 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc-cCCCceEEE-
Confidence 56899999999999999999863 48999999999999999999999875 699999999765432221 111134332
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHH--HhcCcCCcEEEEEeCc
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAV--SDLLVHDGKVFLQSDI 266 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~--~~~LkpgG~l~~~~~~ 266 (336)
.||.+.. ..+..+++.+ ..+|+++|.+++|+..
T Consensus 127 --~DPPy~~------~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 127 --LDPPFFN------GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred --ECcCCCC------CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 2343221 1223444444 3479999999998754
No 143
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.08 E-value=2.8e-09 Score=100.88 Aligned_cols=123 Identities=14% Similarity=0.154 Sum_probs=90.2
Q ss_pred CeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcC--C---------
Q 019743 148 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS--Y--------- 216 (336)
Q Consensus 148 ~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsn--p--------- 216 (336)
.++||+|||+|.+++.+++.. ..|+|+|++++|++.|++|++.++++|++|+++|+.+.+...... .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 369999999999999999885 489999999999999999999999999999999998754421110 0
Q ss_pred CCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743 217 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 287 (336)
Q Consensus 217 p~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 287 (336)
...+|.+++ ||... -..+.+++.+.+ |++.+|++++...++..+..+.. +|....+
T Consensus 277 ~~~~d~v~l---DPPR~-------G~~~~~l~~l~~---~~~ivYvsC~p~tlaRDl~~L~~--~Y~l~~v 332 (353)
T TIGR02143 277 SYNCSTIFV---DPPRA-------GLDPDTCKLVQA---YERILYISCNPETLKANLEQLSE--THRVERF 332 (353)
T ss_pred cCCCCEEEE---CCCCC-------CCcHHHHHHHHc---CCcEEEEEcCHHHHHHHHHHHhc--CcEEEEE
Confidence 112455544 44211 233466666544 79999999998888888877653 3665444
No 144
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.08 E-value=3.6e-09 Score=93.69 Aligned_cols=105 Identities=16% Similarity=0.185 Sum_probs=78.6
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
..+|||+|||+|.++..+++.. ..++++|+|+.+++.+++++...+..++.+...|+.+.. ..++..+|.++..
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~~D~i~~~ 119 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLA----EKGAKSFDVVTCM 119 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh----cCCCCCccEEEeh
Confidence 5689999999999999998764 569999999999999999988777657899998876541 1123456766543
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 265 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~ 265 (336)
..-.+. .....+++++.+.|+|||.+++.+.
T Consensus 120 ~~l~~~--------~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 120 EVLEHV--------PDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred hHHHhC--------CCHHHHHHHHHHhcCCCcEEEEEec
Confidence 211110 1124789999999999999998653
No 145
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.08 E-value=2.8e-10 Score=103.48 Aligned_cols=107 Identities=18% Similarity=0.238 Sum_probs=72.3
Q ss_pred CCeEEEEeccccH----HHHHHHHhCC-----CCeEEEEecChHHHHHHHHHHHH----hCC------------------
Q 019743 147 QPLVVDIGSGNGL----FLLGMARKRK-----DLNFLGLEVNGKLVTHCRDSLQL----SGI------------------ 195 (336)
Q Consensus 147 ~~~vLDiGcGsG~----~~~~la~~~p-----~~~v~giDis~~~l~~a~~n~~~----~~~------------------ 195 (336)
..+|+|+|||||. +++.+++..+ +.+++|+|+|+.|++.|++.+-. .++
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 4689999999996 5666666544 57899999999999999885310 011
Q ss_pred -----CcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743 196 -----TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 196 -----~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~ 264 (336)
.+|+|.+.|+.+. .-|+..+|.|+....-.++. .....++++++++.|+|||++++..
T Consensus 180 ~~~ir~~V~F~~~dl~~~-----~~~~~~fD~I~crnvl~yf~------~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 180 KPELKERVRFAKHNLLAE-----SPPLGDFDLIFCRNVLIYFD------EPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred ChHHhCcCEEeeccCCCC-----CCccCCCCEEEechhHHhCC------HHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 2578888887652 10234567665532111110 0123589999999999999999843
No 146
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.07 E-value=2e-09 Score=81.77 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=77.3
Q ss_pred eEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCC
Q 019743 149 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 228 (336)
Q Consensus 149 ~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~ 228 (336)
+++|+|||+|.++..+++ .+..+++++|+++.++..++++.......++.+++.|+.+... .++..+|.++...+
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP----EADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc----ccCCceEEEEEccc
Confidence 489999999999999988 5678999999999999999865544555679999999876421 12345676665543
Q ss_pred CCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743 229 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 263 (336)
Q Consensus 229 dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~ 263 (336)
..+. ......+++.+.+.|+|||.+++.
T Consensus 76 ~~~~-------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHL-------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeeh-------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 2211 123468899999999999999874
No 147
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.07 E-value=6.7e-09 Score=96.48 Aligned_cols=85 Identities=15% Similarity=0.151 Sum_probs=62.6
Q ss_pred ccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHH
Q 019743 111 PVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSL 190 (336)
Q Consensus 111 ~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~ 190 (336)
.+|+++.+...+..+++.... .+ +.++.+|||+|||+|.+++.+++. +.+|+|+|+|+.|++.|++++
T Consensus 119 ~l~~~~~~~~~v~~~l~~l~~-------~~---~~~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~ 186 (315)
T PLN02585 119 QLDIRLGHAQTVEKVLLWLAE-------DG---SLAGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRA 186 (315)
T ss_pred eeecccChHHHHHHHHHHHHh-------cC---CCCCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHH
Confidence 356677776666655543221 00 112568999999999999999986 679999999999999999998
Q ss_pred HHhC-----CCcEEEEecchhH
Q 019743 191 QLSG-----ITNGYFIATNATS 207 (336)
Q Consensus 191 ~~~~-----~~nv~~~~~d~~~ 207 (336)
...+ ..++.|...|+..
T Consensus 187 ~~~~~~~~~~~~~~f~~~Dl~~ 208 (315)
T PLN02585 187 KEALAALPPEVLPKFEANDLES 208 (315)
T ss_pred HhcccccccccceEEEEcchhh
Confidence 7642 2468888888753
No 148
>PRK05785 hypothetical protein; Provisional
Probab=99.06 E-value=1.7e-09 Score=96.23 Aligned_cols=89 Identities=7% Similarity=0.005 Sum_probs=68.0
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
+.+|||+|||||.++..+++.. +.+++|+|+|++|++.|+++. .++++|+... +.++.++|.++..
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~--------~~~~~d~~~l-----p~~d~sfD~v~~~ 117 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD--------DKVVGSFEAL-----PFRDKSFDVVMSS 117 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc--------ceEEechhhC-----CCCCCCEEEEEec
Confidence 5689999999999999999886 579999999999999997631 3567787653 2256778988776
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCC
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD 257 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~Lkpg 257 (336)
+.-.+. ...++.++++.++|||.
T Consensus 118 ~~l~~~--------~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 118 FALHAS--------DNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred Chhhcc--------CCHHHHHHHHHHHhcCc
Confidence 532221 12358999999999994
No 149
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.06 E-value=7.6e-10 Score=94.03 Aligned_cols=102 Identities=15% Similarity=0.085 Sum_probs=76.2
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEE-EEecchhHHHHhhhcCCCCeEEEEE
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGY-FIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~-~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
....+||+|||||..-..+ ..-|..+|+++|.++.|-+.|.+.++++...++. |++++..+.-++ ++.++|.++
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy-~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l----~d~s~DtVV 150 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFY-PWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQL----ADGSYDTVV 150 (252)
T ss_pred CccceEEecccCCCCcccc-cCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCccc----ccCCeeeEE
Confidence 3456899999999864433 2337899999999999999999999988777776 899988775222 456667654
Q ss_pred eeC--CCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 225 IQC--PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 225 ~~~--~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
..+ ... ....+.++++.++|+|||+++|
T Consensus 151 ~TlvLCSv----------e~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 151 CTLVLCSV----------EDPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred EEEEEecc----------CCHHHHHHHHHHhcCCCcEEEE
Confidence 322 111 1124889999999999999988
No 150
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.06 E-value=3.8e-09 Score=96.52 Aligned_cols=111 Identities=14% Similarity=0.151 Sum_probs=84.8
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC----CCcEEEEecchhHHHHhhhcCCCCeEEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG----ITNGYFIATNATSTFRSIVASYPGKLIL 222 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~----~~nv~~~~~d~~~~~d~ivsnpp~~~d~ 222 (336)
..+||+||||+|.++..+++..+..+++++|+++++++.|+++....+ ..+++++.+|+...+.. .+..+|.
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~----~~~~yDv 148 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD----TENTFDV 148 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh----CCCCccE
Confidence 459999999999999998877667789999999999999999875432 24688899998765332 2345677
Q ss_pred EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743 223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 265 (336)
Q Consensus 223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~ 265 (336)
|++..++|.. ....+...++++.+.+.|+|||.+++.+.
T Consensus 149 Ii~D~~~~~~----~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 149 IIVDSTDPVG----PAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EEEeCCCCCC----cccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 7776665541 11224567999999999999999998644
No 151
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.03 E-value=5.1e-10 Score=98.84 Aligned_cols=100 Identities=16% Similarity=0.053 Sum_probs=68.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHH------------hCCCcEEEEecchhHHHHhhhc
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL------------SGITNGYFIATNATSTFRSIVA 214 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~------------~~~~nv~~~~~d~~~~~d~ivs 214 (336)
+.+|||+|||.|.-++.||.+ +.+|+|+|+|+.+++.+.+.... ....++++.++|+++.- +
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~----~ 111 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT----A 111 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCC----c
Confidence 569999999999999999987 78999999999999987432100 01235888999987531 1
Q ss_pred CCCCeEEEEEe----eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 215 SYPGKLILVSI----QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 215 npp~~~d~i~~----~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
+....+|.++- ....| ...+++++.+.++|+|||++++
T Consensus 112 ~~~~~fd~v~D~~~~~~l~~----------~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 112 ADLADVDAVYDRAALIALPE----------EMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred ccCCCeeEEEehHhHhhCCH----------HHHHHHHHHHHHHcCCCCeEEE
Confidence 11123444431 11111 1346899999999999997554
No 152
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.00 E-value=2.3e-09 Score=105.77 Aligned_cols=103 Identities=18% Similarity=0.222 Sum_probs=75.6
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
..+|||||||+|.++..+++.. .+++|+|+|+.|++.+++.. ....++.++++|+... + .+.|+.++|.++..
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~--~~~~~i~~~~~d~~~~-~--~~~~~~~fD~I~~~ 110 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESIN--GHYKNVKFMCADVTSP-D--LNISDGSVDLIFSN 110 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHh--ccCCceEEEEeccccc-c--cCCCCCCEEEEehh
Confidence 4689999999999999999874 58999999999998875532 2246899999998532 1 12245678877765
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
++-.+... ....++++++.++|||||.+++
T Consensus 111 ~~l~~l~~------~~~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 111 WLLMYLSD------KEVENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred hhHHhCCH------HHHHHHHHHHHHhcCCCeEEEE
Confidence 43222110 1135899999999999999988
No 153
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.99 E-value=2.6e-09 Score=93.42 Aligned_cols=97 Identities=13% Similarity=0.085 Sum_probs=69.8
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
..+|||+|||+|.++..+++..|..+++|+|+|++|++.|+++. .++.+.++|+.+. + ++.++|.++..
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~~----~--~~~sfD~V~~~ 112 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFDP----F--KDNFFDLVLTK 112 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccCC----C--CCCCEEEEEEC
Confidence 46799999999999999998888899999999999999998763 3567788887541 2 45667877654
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
..-.+. ......++++++.+++ ++.+++
T Consensus 113 ~vL~hl------~p~~~~~~l~el~r~~--~~~v~i 140 (204)
T TIGR03587 113 GVLIHI------NPDNLPTAYRELYRCS--NRYILI 140 (204)
T ss_pred ChhhhC------CHHHHHHHHHHHHhhc--CcEEEE
Confidence 221111 0112357888888887 445555
No 154
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.99 E-value=1.1e-08 Score=91.36 Aligned_cols=104 Identities=23% Similarity=0.279 Sum_probs=76.8
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
+.+|||||||+|.++..+++. ..+++++|+++.+++.|++++...+. ++.+...|+.+... .++..+|.++..
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~fD~Ii~~ 121 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAA----EHPGQFDVVTCM 121 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhh----hcCCCccEEEEh
Confidence 568999999999999999876 57899999999999999999877665 57888888765321 123456766543
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 265 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~ 265 (336)
..-.+. .....+++.+.+.|+|||.+++...
T Consensus 122 ~~l~~~--------~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 122 EMLEHV--------PDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred hHhhcc--------CCHHHHHHHHHHHcCCCcEEEEEec
Confidence 211110 0124788999999999999998653
No 155
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.99 E-value=5.5e-09 Score=89.51 Aligned_cols=128 Identities=20% Similarity=0.243 Sum_probs=84.0
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCe---------EEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCC
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLN---------FLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASY 216 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~---------v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnp 216 (336)
+..++|--||||.+.++.|...++.. ++|+|+++++++.|++|++..+.. .+.+.+.|+.+. . .+
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l-~----~~ 103 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDAREL-P----LP 103 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGG-G----GT
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhc-c----cc
Confidence 56899999999999999988766666 999999999999999999998876 488999898764 1 12
Q ss_pred CCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcc
Q 019743 217 PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 284 (336)
Q Consensus 217 p~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~ 284 (336)
++.+|.+..+.|.............+|+.+++++.++|++ ..+++.+..... .+.+...++..
T Consensus 104 ~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~~~----~~~~~~~~~~~ 166 (179)
T PF01170_consen 104 DGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNREL----EKALGLKGWRK 166 (179)
T ss_dssp TSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCCCH----HHHHTSTTSEE
T ss_pred cCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCHHH----HHHhcchhhce
Confidence 3445555554332221111122346789999999999999 555554554332 33444445443
No 156
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.98 E-value=1.4e-08 Score=90.27 Aligned_cols=150 Identities=12% Similarity=0.074 Sum_probs=89.7
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
..+|||+|||+|.++..+++.. ..++|+|+|+.|++.|+++....+. .++.+..+|+.. ++..+|.++.
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--------~~~~fD~v~~ 133 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--------LLGRFDTVVC 133 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh--------ccCCcCEEEE
Confidence 5689999999999999999874 5699999999999999999887766 478999988432 2334565544
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeeccccccccCCCCCCCCC
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGEN 305 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~~~~~~~~~ 305 (336)
...-.++.. .....+++.+.+.+++++.+.+ ..... .......+.. .|.. ..+ ....
T Consensus 134 ~~~l~~~~~------~~~~~~l~~l~~~~~~~~~i~~-~~~~~-~~~~~~~l~~-~~~~---~~~-----------~~~~ 190 (230)
T PRK07580 134 LDVLIHYPQ------EDAARMLAHLASLTRGSLIFTF-APYTP-LLALLHWIGG-LFPG---PSR-----------TTRI 190 (230)
T ss_pred cchhhcCCH------HHHHHHHHHHHhhcCCeEEEEE-CCccH-HHHHHHHhcc-ccCC---ccC-----------CCCc
Confidence 311111000 1124677777776654444433 22211 1111111111 1110 000 0111
Q ss_pred CCCCCCHHHHHHHHcCCCeEEEEE
Q 019743 306 SFGVRSDWEQHVIDRGAPMYRLML 329 (336)
Q Consensus 306 ~~~~~t~~e~~~~~~G~~i~~~~~ 329 (336)
......+++..+.+.|+.+.....
T Consensus 191 ~~~~~~~~~~~l~~~Gf~~~~~~~ 214 (230)
T PRK07580 191 YPHREKGIRRALAAAGFKVVRTER 214 (230)
T ss_pred cccCHHHHHHHHHHCCCceEeeee
Confidence 224567888888888888877554
No 157
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.96 E-value=3e-09 Score=88.72 Aligned_cols=138 Identities=17% Similarity=0.262 Sum_probs=85.6
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
+..+|||||||+|.++..+++.. .+++|+|+|+.+++. .++.....+.... ..|+..+|.++.
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~-----~~~~~~fD~i~~ 84 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK----------RNVVFDNFDAQDP-----PFPDGSFDLIIC 84 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH----------TTSEEEEEECHTH-----HCHSSSEEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh----------hhhhhhhhhhhhh-----hccccchhhHhh
Confidence 46799999999999999997773 499999999999987 1222222222211 114567787776
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeeccccccccCCCCCCCCC
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGEN 305 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~~~~~~~~~ 305 (336)
...-.+.. ....+++.+.++|||||.+++.+..... .....+..+.+.... .. + .
T Consensus 85 ~~~l~~~~--------d~~~~l~~l~~~LkpgG~l~~~~~~~~~--~~~~~~~~~~~~~~~--~~------~-------~ 139 (161)
T PF13489_consen 85 NDVLEHLP--------DPEEFLKELSRLLKPGGYLVISDPNRDD--PSPRSFLKWRYDRPY--GG------H-------V 139 (161)
T ss_dssp ESSGGGSS--------HHHHHHHHHHHCEEEEEEEEEEEEBTTS--HHHHHHHHCCGTCHH--TT------T-------T
T ss_pred HHHHhhcc--------cHHHHHHHHHHhcCCCCEEEEEEcCCcc--hhhhHHHhcCCcCcc--Cc------e-------e
Confidence 53222211 1358999999999999999997754321 122233333322110 00 0 0
Q ss_pred CCCCCCHHHHHHHHcCCCeE
Q 019743 306 SFGVRSDWEQHVIDRGAPMY 325 (336)
Q Consensus 306 ~~~~~t~~e~~~~~~G~~i~ 325 (336)
.......+...+.+.|..+.
T Consensus 140 ~~~~~~~~~~ll~~~G~~iv 159 (161)
T PF13489_consen 140 HFFSPDELRQLLEQAGFEIV 159 (161)
T ss_dssp EEBBHHHHHHHHHHTTEEEE
T ss_pred ccCCHHHHHHHHHHCCCEEE
Confidence 11334678888888887664
No 158
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=2.7e-08 Score=88.04 Aligned_cols=186 Identities=16% Similarity=0.135 Sum_probs=128.9
Q ss_pred ccceeeeeccCCCCCeeeecCCCCCCCCcccccCcccHHHHHHhhhhcCCCCcccccc---cccCCCCCCeEEEEecccc
Q 019743 82 YPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWS---AAYHDPAQPLVVDIGSGNG 158 (336)
Q Consensus 82 ~Pvd~~~~~~~~~~~~~v~~~~~ip~~~~~~digpeT~~~~~~~i~~~~~~~~~i~~~---g~~~~~~~~~vLDiGcGsG 158 (336)
+|..-++|+. +|..+.... +..++-..| |-+++...+.+.-..-++-+.+ -.+.-..+.+|+|-|+|||
T Consensus 46 ~~h~~iIGK~-~G~~v~ssk------G~~vylL~P-TpELWTl~LphRTQI~Yt~Dia~I~~~L~i~PGsvV~EsGTGSG 117 (314)
T KOG2915|consen 46 LPHSDIIGKP-YGSKVASSK------GKFVYLLQP-TPELWTLALPHRTQILYTPDIAMILSMLEIRPGSVVLESGTGSG 117 (314)
T ss_pred cchhheecCC-ccceeeecC------CcEEEEecC-ChHHhhhhccCcceEEecccHHHHHHHhcCCCCCEEEecCCCcc
Confidence 6888888854 777655432 222222233 4455665555432100000000 0011123679999999999
Q ss_pred HHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHH-HHhhhcCCCCeEEEEEeeCCCCCCCcc
Q 019743 159 LFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATST-FRSIVASYPGKLILVSIQCPNPDFNRP 235 (336)
Q Consensus 159 ~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~-~d~ivsnpp~~~d~i~~~~~dp~~~~~ 235 (336)
.++.++|+. .|..+++..|+.+...+.|.+..+.+++ +|+.+.+-|+... |+. .....|.+++..|.||
T Consensus 118 SlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~----ks~~aDaVFLDlPaPw---- 189 (314)
T KOG2915|consen 118 SLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI----KSLKADAVFLDLPAPW---- 189 (314)
T ss_pred hHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc----cccccceEEEcCCChh----
Confidence 999999998 5899999999999999999999999997 4799999888642 221 1345688899999999
Q ss_pred hhhhhcchHHHHHHHHhcCcCCc-EEEEEeCcHHHHHHHHHHHHHcCCcceeeecccc
Q 019743 236 EHRWRMVQRSLVEAVSDLLVHDG-KVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDEC 292 (336)
Q Consensus 236 ~~~~~l~~~~~l~~~~~~LkpgG-~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~ 292 (336)
..+..++..||.+| ++..-+..-+|.+...+.+.+.||..++...+.+
T Consensus 190 ---------~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i~~vEv~~ 238 (314)
T KOG2915|consen 190 ---------EAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEIETVEVLL 238 (314)
T ss_pred ---------hhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCceEEEEEeeh
Confidence 44555566888776 6666667778888889999999999888776644
No 159
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=5.3e-09 Score=100.09 Aligned_cols=121 Identities=20% Similarity=0.297 Sum_probs=90.7
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
...++|++||||.+++++|+. -.+|+|||+++.+++-|++|++.+|++|.+|+++-+++.+..++.++-..-+.+.+
T Consensus 384 ~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~~~v~i- 460 (534)
T KOG2187|consen 384 DKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDSETLVAI- 460 (534)
T ss_pred CcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcccCCCCCceEEE-
Confidence 478999999999999999987 57899999999999999999999999999999998888877777644222232222
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHH
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFL 278 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~ 278 (336)
.||..+ -....+++.+.+.-++--.+|+.......+..+..++.
T Consensus 461 -iDPpR~-------Glh~~~ik~l~~~~~~~rlvyvSCn~~t~ar~v~~lc~ 504 (534)
T KOG2187|consen 461 -IDPPRK-------GLHMKVIKALRAYKNPRRLVYVSCNPHTAARNVIDLCS 504 (534)
T ss_pred -ECCCcc-------cccHHHHHHHHhccCccceEEEEcCHHHhhhhHHHhhc
Confidence 244321 23457888887776688888887665544555555543
No 160
>PRK06202 hypothetical protein; Provisional
Probab=98.93 E-value=8.2e-09 Score=92.12 Aligned_cols=100 Identities=15% Similarity=0.150 Sum_probs=67.1
Q ss_pred CCeEEEEeccccHHHHHHHHh----CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARK----RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLIL 222 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~----~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~ 222 (336)
..+|||||||+|.++..|++. .|+.+++|+|+|++|++.|+++.... ++.+...+.... +.++.++|.
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l-----~~~~~~fD~ 132 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDEL-----VAEGERFDV 132 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEecccc-----cccCCCccE
Confidence 568999999999999988864 45679999999999999998875433 355555544322 114556777
Q ss_pred EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
++.++.-.+... .....+++++.++++ |.+++
T Consensus 133 V~~~~~lhh~~d------~~~~~~l~~~~r~~~--~~~~i 164 (232)
T PRK06202 133 VTSNHFLHHLDD------AEVVRLLADSAALAR--RLVLH 164 (232)
T ss_pred EEECCeeecCCh------HHHHHHHHHHHHhcC--eeEEE
Confidence 665532221110 012478999999997 44444
No 161
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.93 E-value=4.9e-08 Score=83.08 Aligned_cols=153 Identities=15% Similarity=0.179 Sum_probs=96.9
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
+.+|||||||.|.+...|.+. .++..+|+|++++.+..|.+ +| +.++++|+.+-+. ..|+.+||.+.+.
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~----rG---v~Viq~Dld~gL~---~f~d~sFD~VIls 82 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA----RG---VSVIQGDLDEGLA---DFPDQSFDYVILS 82 (193)
T ss_pred CCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH----cC---CCEEECCHHHhHh---hCCCCCccEEehH
Confidence 689999999999999888775 48999999999999887754 24 5689999987533 2378889987664
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeeccccccccCCCCCCCCCC
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENS 306 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~~~~~~~~~~ 306 (336)
-.-... . --+++++++ |+-|...++...+-.+...-.+++- .|---+ +.. ..-+|.....
T Consensus 83 qtLQ~~--~------~P~~vL~Em---lRVgr~~IVsFPNFg~W~~R~~l~~-~GrmPv--t~~------lPy~WYdTPN 142 (193)
T PF07021_consen 83 QTLQAV--R------RPDEVLEEM---LRVGRRAIVSFPNFGHWRNRLQLLL-RGRMPV--TKA------LPYEWYDTPN 142 (193)
T ss_pred hHHHhH--h------HHHHHHHHH---HHhcCeEEEEecChHHHHHHHHHHh-cCCCCC--CCC------CCCcccCCCC
Confidence 111100 0 013566666 4456677776655444433333332 232211 111 1123544443
Q ss_pred CCCCC--HHHHHHHHcCCCeEEEEEE
Q 019743 307 FGVRS--DWEQHVIDRGAPMYRLMLS 330 (336)
Q Consensus 307 ~~~~t--~~e~~~~~~G~~i~~~~~~ 330 (336)
.+..| .||....+.|..|.+-.+-
T Consensus 143 ih~~Ti~DFe~lc~~~~i~I~~~~~~ 168 (193)
T PF07021_consen 143 IHLCTIKDFEDLCRELGIRIEERVFL 168 (193)
T ss_pred cccccHHHHHHHHHHCCCEEEEEEEE
Confidence 44544 7999999999999776553
No 162
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.92 E-value=1.5e-09 Score=99.33 Aligned_cols=69 Identities=19% Similarity=0.283 Sum_probs=57.9
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH----H--HhhhcCCCCeE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST----F--RSIVASYPGKL 220 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~----~--d~ivsnpp~~~ 220 (336)
+.+|||||||+|.++..++++.+ +++|+|+++.|++.++++... .+++++++|+.+. + +.+++||||.+
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~~~~~~vv~NlPY~i 117 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSELQPLKVVANLPYNI 117 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHHcCcceEEEeCCccc
Confidence 56899999999999999999864 899999999999999887642 6899999998752 2 56788888853
No 163
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.92 E-value=2.5e-09 Score=98.46 Aligned_cols=73 Identities=21% Similarity=0.304 Sum_probs=63.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC-CCcEEEEecchhH----HHHhhhcCCCCeEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYFIATNATS----TFRSIVASYPGKLI 221 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~-~~nv~~~~~d~~~----~~d~ivsnpp~~~d 221 (336)
+.+|||||||+|.++..+++. ..+++|+|+++.+++.+++++..++ ..+++++++|+.+ .+|.+++|+||.+.
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPYFDVCVANVPYQIS 114 (294)
T ss_pred cCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccccCEEEecCCcccC
Confidence 568999999999999999987 4679999999999999999988766 4689999999975 26788999999654
No 164
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.92 E-value=4.7e-09 Score=91.36 Aligned_cols=45 Identities=22% Similarity=0.498 Sum_probs=41.7
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQ 191 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~ 191 (336)
...+|||||-+|.+++++|+.+-...++|+||++..++.|+++++
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r 103 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIR 103 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcc
Confidence 457999999999999999999877889999999999999999875
No 165
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.89 E-value=3.8e-09 Score=95.87 Aligned_cols=70 Identities=23% Similarity=0.373 Sum_probs=60.2
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH----HHHhhhcCCCCeE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS----TFRSIVASYPGKL 220 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~----~~d~ivsnpp~~~ 220 (336)
+.+|||||||+|.++..++++ ..+++|+|+++.+++.+++++.. ..|+.++++|+.+ .+|.+++|+||..
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~~~~d~Vv~NlPy~i 103 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDLPEFNKVVSNLPYQI 103 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCchhceEEEEcCCccc
Confidence 568999999999999999988 46899999999999999988754 4689999999865 2577889999854
No 166
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.86 E-value=3.4e-08 Score=84.78 Aligned_cols=111 Identities=18% Similarity=0.279 Sum_probs=79.6
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
+.++||+-||||.+++..+.+. -..++.||.++.+++..++|++..+..+ ++++..|+...+..... +...+|.+++
T Consensus 43 g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~-~~~~fDiIfl 120 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK-KGEKFDIIFL 120 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH-CTS-EEEEEE
T ss_pred CCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc-cCCCceEEEE
Confidence 6799999999999999988885 4689999999999999999999998775 99999998775543321 2455676655
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHH--hcCcCCcEEEEEeCcH
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVS--DLLVHDGKVFLQSDIE 267 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~--~~LkpgG~l~~~~~~~ 267 (336)
. |..... ..+.++++.+. .+|+++|.+++|++..
T Consensus 121 D---PPY~~~-----~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 D---PPYAKG-----LYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp -----STTSC-----HHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred C---CCcccc-----hHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 4 422211 11356777776 8999999999998653
No 167
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.85 E-value=2.8e-08 Score=94.80 Aligned_cols=99 Identities=17% Similarity=0.207 Sum_probs=79.1
Q ss_pred CeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeC
Q 019743 148 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 227 (336)
Q Consensus 148 ~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~ 227 (336)
.+|||++||+|.+++.+|.+.+...|+++|+++.+++.+++|++.++++++.+.++|+...+.. ...+|.+.++
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~-----~~~fD~V~lD- 132 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE-----ERKFDVVDID- 132 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh-----cCCCCEEEEC-
Confidence 5799999999999999999876668999999999999999999999998899999999765321 1235665553
Q ss_pred CCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743 228 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 263 (336)
Q Consensus 228 ~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~ 263 (336)
|. . .-..++..+.+.+++||.+++.
T Consensus 133 --P~-G--------s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 133 --PF-G--------SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred --CC-C--------CcHHHHHHHHHHhcCCCEEEEE
Confidence 32 1 1136778877889999999994
No 168
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.85 E-value=1.5e-08 Score=87.97 Aligned_cols=98 Identities=22% Similarity=0.327 Sum_probs=73.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
+..|+|+.||-|.+++.+|+..+...|+|+|++|.+++..++|++.|++++ +..+++|+.+.. +...+|.+.+
T Consensus 102 ~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~------~~~~~drvim 175 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL------PEGKFDRVIM 175 (200)
T ss_dssp T-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---------TT-EEEEEE
T ss_pred ceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc------CccccCEEEE
Confidence 679999999999999999997778899999999999999999999999875 889999987652 1456787776
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
+.|.. ...|+..+..++++||.+.+
T Consensus 176 ~lp~~------------~~~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 176 NLPES------------SLEFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp --TSS------------GGGGHHHHHHHEEEEEEEEE
T ss_pred CChHH------------HHHHHHHHHHHhcCCcEEEC
Confidence 64432 12688889999999998764
No 169
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=5.6e-08 Score=93.86 Aligned_cols=122 Identities=20% Similarity=0.216 Sum_probs=92.6
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
..+++|+=||.|.|++.||++ ..+|+|+|+++++++.|++|++.+++.|++|..+++.+.....- ..+.+|.+++.
T Consensus 294 ~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~--~~~~~d~VvvD 369 (432)
T COG2265 294 GERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW--EGYKPDVVVVD 369 (432)
T ss_pred CCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc--ccCCCCEEEEC
Confidence 568999999999999999976 67899999999999999999999999999999999987533321 13456766654
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcc
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 284 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~ 284 (336)
|.. +-..+.+++.+. .++|...+|+.++...++..+. .|.+.||..
T Consensus 370 ---PPR-------~G~~~~~lk~l~-~~~p~~IvYVSCNP~TlaRDl~-~L~~~gy~i 415 (432)
T COG2265 370 ---PPR-------AGADREVLKQLA-KLKPKRIVYVSCNPATLARDLA-ILASTGYEI 415 (432)
T ss_pred ---CCC-------CCCCHHHHHHHH-hcCCCcEEEEeCCHHHHHHHHH-HHHhCCeEE
Confidence 321 122346666665 4689999999887777666654 456667753
No 170
>PLN02823 spermine synthase
Probab=98.81 E-value=1.1e-07 Score=89.00 Aligned_cols=112 Identities=17% Similarity=0.216 Sum_probs=87.4
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC----CCcEEEEecchhHHHHhhhcCCCCeEEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG----ITNGYFIATNATSTFRSIVASYPGKLIL 222 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~----~~nv~~~~~d~~~~~d~ivsnpp~~~d~ 222 (336)
..+||.||+|.|..+..+++..+..+++.+|+++++++.|++.....+ -.+++++.+|+...+. +.+..+|.
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~----~~~~~yDv 179 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELE----KRDEKFDV 179 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHh----hCCCCccE
Confidence 468999999999999988887667899999999999999999875432 2579999999987643 23556788
Q ss_pred EEeeCCCCCCCcchhhhhcchHHHHH-HHHhcCcCCcEEEEEe
Q 019743 223 VSIQCPNPDFNRPEHRWRMVQRSLVE-AVSDLLVHDGKVFLQS 264 (336)
Q Consensus 223 i~~~~~dp~~~~~~~~~~l~~~~~l~-~~~~~LkpgG~l~~~~ 264 (336)
|++..+||.... +...++.+.|++ .+.+.|+|||.+++..
T Consensus 180 Ii~D~~dp~~~~--~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 180 IIGDLADPVEGG--PCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred EEecCCCccccC--cchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 888777764211 112366778998 8999999999998864
No 171
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.80 E-value=1e-08 Score=89.39 Aligned_cols=107 Identities=11% Similarity=0.198 Sum_probs=73.3
Q ss_pred eEEEEeccccHHHHHHHHhCCC--CeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 149 LVVDIGSGNGLFLLGMARKRKD--LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 149 ~vLDiGcGsG~~~~~la~~~p~--~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
+|||+|||.|.....+.+..|+ ..+++.|.|+.|++..+++..... +++.-...|+..- +..-+-++.++|.+.+-
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~-~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSP-SLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccch-hccCCCCcCccceEEEE
Confidence 7999999999999999998777 999999999999999988865432 4455555555431 11112134566655433
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 263 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~ 263 (336)
|--.... + .-....++++.++|||||.+++.
T Consensus 152 FvLSAi~---p---ek~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 152 FVLSAIH---P---EKMQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred EEEeccC---h---HHHHHHHHHHHHHhCCCcEEEEe
Confidence 2111000 0 12347899999999999999993
No 172
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.77 E-value=8.1e-08 Score=90.94 Aligned_cols=122 Identities=22% Similarity=0.302 Sum_probs=78.4
Q ss_pred eEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhh-----------hcCCC
Q 019743 149 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSI-----------VASYP 217 (336)
Q Consensus 149 ~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~i-----------vsnpp 217 (336)
.+||+-||+|.+++.||+.. .+|+|+|+++.|++.|++|++.++++|++|+++++.+..+.+ +....
T Consensus 199 ~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 276 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLKS 276 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGC
T ss_pred cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhhh
Confidence 79999999999999999884 689999999999999999999999999999998876531110 00112
Q ss_pred CeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743 218 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 287 (336)
Q Consensus 218 ~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 287 (336)
+.+|.+.+ ||... -..+.+++.+.+ +.=.+|+.++...++..+..+ .+ ||....+
T Consensus 277 ~~~d~vil---DPPR~-------G~~~~~~~~~~~---~~~ivYvSCnP~tlaRDl~~L-~~-~y~~~~v 331 (352)
T PF05958_consen 277 FKFDAVIL---DPPRA-------GLDEKVIELIKK---LKRIVYVSCNPATLARDLKIL-KE-GYKLEKV 331 (352)
T ss_dssp TTESEEEE------TT--------SCHHHHHHHHH---SSEEEEEES-HHHHHHHHHHH-HC-CEEEEEE
T ss_pred cCCCEEEE---cCCCC-------CchHHHHHHHhc---CCeEEEEECCHHHHHHHHHHH-hh-cCEEEEE
Confidence 34565544 34211 122455555543 356888888888887777665 33 7776544
No 173
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.74 E-value=8.4e-09 Score=89.91 Aligned_cols=95 Identities=15% Similarity=0.169 Sum_probs=64.9
Q ss_pred eEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecch-h---HHHHhhhcCCCCeEEEEE
Q 019743 149 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNA-T---STFRSIVASYPGKLILVS 224 (336)
Q Consensus 149 ~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~-~---~~~d~ivsnpp~~~d~i~ 224 (336)
.++|+|||+|.-++.+|..+ .+|+|+|+|++||+.|++.- +++..+... . +.++++- ++.++|.|.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~------~~~y~~t~~~ms~~~~v~L~g--~e~SVDlI~ 105 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHP------PVTYCHTPSTMSSDEMVDLLG--GEESVDLIT 105 (261)
T ss_pred eEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCC------CcccccCCccccccccccccC--CCcceeeeh
Confidence 78999999998888888775 46999999999999886542 222222111 0 1123322 477888776
Q ss_pred eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCc-EEEE
Q 019743 225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG-KVFL 262 (336)
Q Consensus 225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG-~l~~ 262 (336)
..-.-.| ...++|.++++++|++.| .+.+
T Consensus 106 ~Aqa~HW---------Fdle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 106 AAQAVHW---------FDLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred hhhhHHh---------hchHHHHHHHHHHcCCCCCEEEE
Confidence 5433333 235799999999999877 5555
No 174
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.73 E-value=1.3e-07 Score=89.71 Aligned_cols=116 Identities=19% Similarity=0.217 Sum_probs=83.3
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC--cEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~--nv~~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
+.+||++-|=||.+++..|... ..++++||+|..+++.|++|++.||++ ...|+++|+++.+...-. -...+|.|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~-~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAER-RGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHh-cCCcccEEE
Confidence 5689999999999999999873 238999999999999999999999974 488999999875332220 011344444
Q ss_pred eeCCCCCCCc-c--hhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743 225 IQCPNPDFNR-P--EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 266 (336)
Q Consensus 225 ~~~~dp~~~~-~--~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~ 266 (336)
+..| .+.. + .....-.|.+++..+.+.|+|||.+++.+..
T Consensus 296 lDPP--sF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 296 LDPP--SFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred ECCc--ccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 3311 1111 0 0111234789999999999999999997643
No 175
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.73 E-value=2.4e-07 Score=90.47 Aligned_cols=132 Identities=16% Similarity=0.134 Sum_probs=92.7
Q ss_pred CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
.+.+|||+|||.|.=+..+|... ....+++.|+++..++..++|+++.|+.|+.+...|.... ...+ +..+|.|.
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~-~~~~---~~~fD~IL 188 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVF-GAAL---PETFDAIL 188 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhh-hhhc---hhhcCeEE
Confidence 36799999999999999999875 3578999999999999999999999999999999987643 1111 33467666
Q ss_pred eeCCCC----CCCcchhh----------hhcchHHHHHHHHhcCcCCcEEEEEeCc---HHHHHHHHHHHHHcC
Q 019743 225 IQCPNP----DFNRPEHR----------WRMVQRSLVEAVSDLLVHDGKVFLQSDI---EEVMLRMKQQFLEYG 281 (336)
Q Consensus 225 ~~~~dp----~~~~~~~~----------~~l~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~~l~~~g 281 (336)
+..|-. +.+..... -...+++++..+.+.|||||+++-.|-. .+.-+-+...+++++
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~ 262 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYP 262 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCC
Confidence 553322 11111000 1123689999999999999999886643 222223444555553
No 176
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.73 E-value=7.7e-08 Score=98.98 Aligned_cols=112 Identities=13% Similarity=0.143 Sum_probs=81.0
Q ss_pred CCeEEEEeccccHHHHHHHHhC------------------------------------------CCCeEEEEecChHHHH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR------------------------------------------KDLNFLGLEVNGKLVT 184 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~------------------------------------------p~~~v~giDis~~~l~ 184 (336)
+..++|-+||||.+.+..|... ...+++|+|+++.|++
T Consensus 191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~ 270 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ 270 (702)
T ss_pred CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence 4689999999999999987631 1236999999999999
Q ss_pred HHHHHHHHhCCCc-EEEEecchhHH--------HHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCc
Q 019743 185 HCRDSLQLSGITN-GYFIATNATST--------FRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 255 (336)
Q Consensus 185 ~a~~n~~~~~~~n-v~~~~~d~~~~--------~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~Lk 255 (336)
.|++|+..+|+.+ +.+.++|+.+. +|.|++||||... ..+. .....+|+.+-+.+. ...
T Consensus 271 ~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r-----~~~~------~~l~~lY~~lg~~lk-~~~ 338 (702)
T PRK11783 271 AARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGER-----LGEE------PALIALYSQLGRRLK-QQF 338 (702)
T ss_pred HHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCc-----cCch------HHHHHHHHHHHHHHH-HhC
Confidence 9999999999864 89999998652 6788888888421 1110 111234555554443 334
Q ss_pred CCcEEEEEeCcHHHH
Q 019743 256 HDGKVFLQSDIEEVM 270 (336)
Q Consensus 256 pgG~l~~~~~~~~~~ 270 (336)
+|+.+++-++...+.
T Consensus 339 ~g~~~~llt~~~~l~ 353 (702)
T PRK11783 339 GGWNAALFSSSPELL 353 (702)
T ss_pred CCCeEEEEeCCHHHH
Confidence 999999988765543
No 177
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.72 E-value=1.2e-07 Score=86.00 Aligned_cols=130 Identities=15% Similarity=0.178 Sum_probs=81.7
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
++.+|||||||+|.++..++.+.+ ..|+|+|-++..+.+.+.-..-.+.++ +.++-.-+.+. ++ ...||.++
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~L-----p~-~~~FDtVF 187 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDL-----PN-LGAFDTVF 187 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhc-----cc-cCCcCEEE
Confidence 367999999999999999998864 469999998887766443323333333 33332222221 22 34466654
Q ss_pred eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH-----------------------HHHHHHHHHHHcC
Q 019743 225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE-----------------------VMLRMKQQFLEYG 281 (336)
Q Consensus 225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~-----------------------~~~~~~~~l~~~g 281 (336)
..- ...+.+++ -..+.++.+.|+|||.++++|-.-+ ....+...++..|
T Consensus 188 ~MG--VLYHrr~P------l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~g 259 (315)
T PF08003_consen 188 SMG--VLYHRRSP------LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAG 259 (315)
T ss_pred Eee--ehhccCCH------HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcC
Confidence 321 11011111 2788999999999999999762111 1345777888889
Q ss_pred Ccceeeecc
Q 019743 282 KGKLVLVQD 290 (336)
Q Consensus 282 ~~~~~~~~d 290 (336)
|..+++..-
T Consensus 260 F~~v~~v~~ 268 (315)
T PF08003_consen 260 FKDVRCVDV 268 (315)
T ss_pred CceEEEecC
Confidence 988876543
No 178
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.71 E-value=4.7e-07 Score=78.69 Aligned_cols=126 Identities=17% Similarity=0.226 Sum_probs=98.8
Q ss_pred cccccCcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHH
Q 019743 110 EPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRD 188 (336)
Q Consensus 110 ~~~digpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~ 188 (336)
..+.++|+-.......++... ..++||||.=||..++..|...| +.+++++|++++..+.+.+
T Consensus 53 ~~m~v~~d~g~fl~~li~~~~----------------ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~ 116 (237)
T KOG1663|consen 53 SEMLVGPDKGQFLQMLIRLLN----------------AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLE 116 (237)
T ss_pred cceecChHHHHHHHHHHHHhC----------------CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHH
Confidence 345556777666666665432 57899999999999999999865 6899999999999999999
Q ss_pred HHHHhCCC-cEEEEecchhHHHHhhhcC-CCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 189 SLQLSGIT-NGYFIATNATSTFRSIVAS-YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 189 n~~~~~~~-nv~~~~~d~~~~~d~ivsn-pp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
-.+..|.. .++++++++.+.+|.++.+ .+..+|.+++. .| ...|-.+.+++.++|++||.+++
T Consensus 117 ~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaFvD---ad--------K~nY~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 117 LVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAFVD---AD--------KDNYSNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred HHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEEEc---cc--------hHHHHHHHHHHHhhcccccEEEE
Confidence 99888875 4999999999988988865 34567766553 33 12334778888899999999998
No 179
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.71 E-value=5.2e-08 Score=84.48 Aligned_cols=134 Identities=10% Similarity=0.105 Sum_probs=98.7
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC--cEEEEecchhHHHHhhhcCCCCeEEEE
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILV 223 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~--nv~~~~~d~~~~~d~ivsnpp~~~d~i 223 (336)
.+.+|||-|+|-|..++..+++. ..+|+.+|.++..++.|.-|=-..++. +++++.+|+.+... +.++.++|.+
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~---~~~D~sfDaI 209 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVK---DFDDESFDAI 209 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHh---cCCccccceE
Confidence 36799999999999999998883 339999999999999998775444432 57999999976422 2356677765
Q ss_pred EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH-------HHHHHHHHHHHHcCCcceeee
Q 019743 224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE-------EVMLRMKQQFLEYGKGKLVLV 288 (336)
Q Consensus 224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~-------~~~~~~~~~l~~~g~~~~~~~ 288 (336)
... .|.+ .....+..++|-++++|+|||||+++--++.. +....+.+.|.+.||..+...
T Consensus 210 iHD--PPRf---S~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~ 276 (287)
T COG2521 210 IHD--PPRF---SLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKV 276 (287)
T ss_pred eeC--CCcc---chhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeee
Confidence 432 1221 12335667899999999999999999865432 345678889999999865443
No 180
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.71 E-value=5.1e-07 Score=82.51 Aligned_cols=114 Identities=16% Similarity=0.250 Sum_probs=80.7
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC--cEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~--nv~~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
+.+|||+-|=||.+++..+... ..+++.||.|..+++.|++|++.|+++ +++|++.|+++.+..+-. ...+|.|+
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~--~~~fD~II 200 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK--GGRFDLII 200 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH--TT-EEEEE
T ss_pred CCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc--CCCCCEEE
Confidence 5799999999999999877653 457999999999999999999999864 799999999886554322 23567766
Q ss_pred eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743 225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 265 (336)
Q Consensus 225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~ 265 (336)
+..| .+.+....-.-.|.+++..+.++|+|||.+++.+.
T Consensus 201 lDPP--sF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 201 LDPP--SFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp E--S--SEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred ECCC--CCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 5522 12222111123478899999999999999888654
No 181
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.69 E-value=4.6e-07 Score=77.69 Aligned_cols=100 Identities=27% Similarity=0.352 Sum_probs=81.2
Q ss_pred eEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCC
Q 019743 149 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 228 (336)
Q Consensus 149 ~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~ 228 (336)
+++|||||.|.=++.+|-.+|+.+++.+|.+.+-+...+.-+...+++|++++++.+.+ ...+..+|.++..--
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~------~~~~~~fd~v~aRAv 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE------PEYRESFDVVTARAV 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH------TTTTT-EEEEEEESS
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc------cccCCCccEEEeehh
Confidence 79999999999999999999999999999999999999999999999999999999877 124566777665422
Q ss_pred CCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743 229 NPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 266 (336)
Q Consensus 229 dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~ 266 (336)
.+ ...+++-+.+.|++||.+++.-+.
T Consensus 125 ~~------------l~~l~~~~~~~l~~~G~~l~~KG~ 150 (184)
T PF02527_consen 125 AP------------LDKLLELARPLLKPGGRLLAYKGP 150 (184)
T ss_dssp SS------------HHHHHHHHGGGEEEEEEEEEEESS
T ss_pred cC------------HHHHHHHHHHhcCCCCEEEEEcCC
Confidence 11 248889999999999999997654
No 182
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.69 E-value=4.7e-07 Score=78.53 Aligned_cols=153 Identities=12% Similarity=0.104 Sum_probs=87.6
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
+.+|||+|||+|.++..+++.. ...++|+|+|+++++.|++ .++.++++|+.+.+. ..++.++|.++..
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~-------~~~~~~~~d~~~~l~---~~~~~sfD~Vi~~ 82 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA-------RGVNVIQGDLDEGLE---AFPDKSFDYVILS 82 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH-------cCCeEEEEEhhhccc---ccCCCCcCEEEEh
Confidence 4689999999999999888764 5688999999999998854 246788888754211 1245567776654
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeeccccccccCCCCCCCCCC
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENS 306 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~~~~~~~~~~ 306 (336)
..-.+.. ....+++++.+.++ ..++......+.......+. .+.... . .. + .-.|.....
T Consensus 83 ~~l~~~~--------d~~~~l~e~~r~~~---~~ii~~p~~~~~~~~~~~~~-~~~~~~-~-~~-~-----~~~~~~~~~ 142 (194)
T TIGR02081 83 QTLQATR--------NPEEILDEMLRVGR---HAIVSFPNFGYWRVRWSILT-KGRMPV-T-GE-L-----PYDWYNTPN 142 (194)
T ss_pred hHhHcCc--------CHHHHHHHHHHhCC---eEEEEcCChhHHHHHHHHHh-CCcccc-C-CC-C-----CccccCCCC
Confidence 3221110 12367777776654 44444433332222222221 121110 0 00 0 001222111
Q ss_pred --CCCCCHHHHHHHHcCCCeEEEEEE
Q 019743 307 --FGVRSDWEQHVIDRGAPMYRLMLS 330 (336)
Q Consensus 307 --~~~~t~~e~~~~~~G~~i~~~~~~ 330 (336)
.....++.+.+.+.|+.+....+.
T Consensus 143 ~~~~s~~~~~~ll~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 143 IHFCTIADFEDLCGELNLRILDRAAF 168 (194)
T ss_pred cccCcHHHHHHHHHHCCCEEEEEEEe
Confidence 233457889999999999876654
No 183
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.67 E-value=1.7e-06 Score=73.60 Aligned_cols=109 Identities=15% Similarity=0.240 Sum_probs=78.3
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCC--eEEE
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPG--KLIL 222 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~--~~d~ 222 (336)
.+.++||+-+|||.+++..+.+. ...++.||.+..++...++|++..+. .+++++..|+...+.. +.. .+|.
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~----~~~~~~FDl 117 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQ----LGTREPFDL 117 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHh----cCCCCcccE
Confidence 36899999999999999999886 56899999999999999999998884 4789999999853222 222 2565
Q ss_pred EEeeCCCCCCCcchhhhhcch-HHHHH--HHHhcCcCCcEEEEEeCcH
Q 019743 223 VSIQCPNPDFNRPEHRWRMVQ-RSLVE--AVSDLLVHDGKVFLQSDIE 267 (336)
Q Consensus 223 i~~~~~dp~~~~~~~~~~l~~-~~~l~--~~~~~LkpgG~l~~~~~~~ 267 (336)
+++ ||.+... +.. ..-+. .-..+|+|+|.+++|++..
T Consensus 118 Vfl---DPPy~~~-----l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 118 VFL---DPPYAKG-----LLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred EEe---CCCCccc-----hhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 544 3432211 110 11111 2457899999999999753
No 184
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.67 E-value=4.2e-07 Score=81.77 Aligned_cols=121 Identities=14% Similarity=0.163 Sum_probs=93.1
Q ss_pred CCeEEEEeccccHHHHHHHHhCCC--CeEEEEecChHHHHHHHHHHHHhCCCcE-EEEecchhHH--HHhhhcCCCCe--
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKD--LNFLGLEVNGKLVTHCRDSLQLSGITNG-YFIATNATST--FRSIVASYPGK-- 219 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~--~~v~giDis~~~l~~a~~n~~~~~~~nv-~~~~~d~~~~--~d~ivsnpp~~-- 219 (336)
..+||||.||.|...+.....+|. ..+...|.|+..++..++-+++.|++++ +|.++|+++. +..+- |...
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~--p~P~l~ 213 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALD--PAPTLA 213 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccC--CCCCEE
Confidence 568999999999999998888886 7899999999999999999999999986 9999999874 22222 2211
Q ss_pred -EEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC--cHHHHHHHHHHHHHc
Q 019743 220 -LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD--IEEVMLRMKQQFLEY 280 (336)
Q Consensus 220 -~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~--~~~~~~~~~~~l~~~ 280 (336)
++.++-.|+|-. .....+..+++.|.|||.++. |+ |.++.+.+...|.++
T Consensus 214 iVsGL~ElF~Dn~----------lv~~sl~gl~~al~pgG~lIy-TgQPwHPQle~IAr~LtsH 266 (311)
T PF12147_consen 214 IVSGLYELFPDND----------LVRRSLAGLARALEPGGYLIY-TGQPWHPQLEMIARVLTSH 266 (311)
T ss_pred EEecchhhCCcHH----------HHHHHHHHHHHHhCCCcEEEE-cCCCCCcchHHHHHHHhcc
Confidence 222333455431 235678899999999999888 44 677777777777665
No 185
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.66 E-value=1.2e-08 Score=88.13 Aligned_cols=123 Identities=11% Similarity=0.114 Sum_probs=76.7
Q ss_pred CeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeC
Q 019743 148 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQC 227 (336)
Q Consensus 148 ~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~ 227 (336)
.++||+|||||-.+..|-.. -.+.+|+|||++|++.|.++-- .+ ++.+.|+..+.+ +|.+..+|.|..
T Consensus 127 ~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg~---YD--~L~~Aea~~Fl~---~~~~er~DLi~A-- 194 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKGL---YD--TLYVAEAVLFLE---DLTQERFDLIVA-- 194 (287)
T ss_pred ceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhccc---hH--HHHHHHHHHHhh---hccCCcccchhh--
Confidence 57999999999999998766 4579999999999999976521 11 123333332211 122333443321
Q ss_pred CCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC----cH--------HH---HHHHHHHHHHcCCcceeee
Q 019743 228 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD----IE--------EV---MLRMKQQFLEYGKGKLVLV 288 (336)
Q Consensus 228 ~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~----~~--------~~---~~~~~~~l~~~g~~~~~~~ 288 (336)
.|..+.. -..+.++..+...|+|||.|.|.+. +. .| ...+...+...|+..+.+.
T Consensus 195 aDVl~Yl------G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~ 264 (287)
T COG4976 195 ADVLPYL------GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIE 264 (287)
T ss_pred hhHHHhh------cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEee
Confidence 1111000 0135888999999999999999441 11 11 2257778888888876554
No 186
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.65 E-value=7.5e-08 Score=85.02 Aligned_cols=105 Identities=10% Similarity=0.080 Sum_probs=71.7
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHH------------HhCCCcEEEEecchhHHHHhhhc
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQ------------LSGITNGYFIATNATSTFRSIVA 214 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~------------~~~~~nv~~~~~d~~~~~d~ivs 214 (336)
+.+||..|||.|.-+..||.+ +.+|+|+|+|+.+++.+.+... .....+++++++|+++. +. -+
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l-~~-~~ 119 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNL-PK-IA 119 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCC-Cc-cc
Confidence 579999999999999999988 6789999999999999866210 01124689999998763 10 00
Q ss_pred CCCCeEEEEEee---CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743 215 SYPGKLILVSIQ---CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 215 npp~~~d~i~~~---~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~ 264 (336)
..-..+|.|+-. ..-|. ....+.++.+.+.|+|||.+++.+
T Consensus 120 ~~~~~fD~VyDra~~~Alpp---------~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPN---------DLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred cccCCcCeeeeehhHhcCCH---------HHHHHHHHHHHHHhCCCcEEEEEE
Confidence 001234443321 00110 134589999999999999988844
No 187
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.65 E-value=6.3e-08 Score=87.61 Aligned_cols=68 Identities=24% Similarity=0.371 Sum_probs=55.2
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH----HH---hhhcCCCC
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST----FR---SIVASYPG 218 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~----~d---~ivsnpp~ 218 (336)
..+|||||||+|.++..++++.+ .++++|+++.+++.++++... ..++.++++|+... +| .+++|+||
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~~~d~~~~vvsNlPy 104 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLPDFPKQLKVVSNLPY 104 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChhHcCCcceEEEcCCh
Confidence 57899999999999999999874 599999999999999887643 46899999998752 33 45555555
No 188
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.63 E-value=2e-07 Score=87.22 Aligned_cols=126 Identities=18% Similarity=0.192 Sum_probs=79.4
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC-------C---CcEEEEecchhH-HHHhhhc
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-------I---TNGYFIATNATS-TFRSIVA 214 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~-------~---~nv~~~~~d~~~-~~d~ivs 214 (336)
.+..|||||||-|.=+.-..... -..++|+||+...++.|+++.+... . -...|+.+|.+. .+...+.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 36799999999777555555443 4689999999999999999984321 1 136778888764 2344443
Q ss_pred CCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHH
Q 019743 215 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLE 279 (336)
Q Consensus 215 npp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~ 279 (336)
.+...+|.+.+.|.-.+. .....-.+.++..+...|+|||.|+..+.. ...+.+.+.+
T Consensus 141 ~~~~~FDvVScQFalHY~----Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d---~~~i~~~l~~ 198 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYA----FESEEKARQFLKNVSSLLKPGGYFIGTTPD---SDEIVKRLRE 198 (331)
T ss_dssp STTS-EEEEEEES-GGGG----GSSHHHHHHHHHHHHHTEEEEEEEEEEEE----HHHHHCCHHC
T ss_pred ccCCCcceeehHHHHHHh----cCCHHHHHHHHHHHHHhcCCCCEEEEEecC---HHHHHHHHHh
Confidence 233478888877644321 011122468999999999999999997754 3344444444
No 189
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.63 E-value=2.1e-07 Score=79.25 Aligned_cols=108 Identities=18% Similarity=0.243 Sum_probs=69.1
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC---CCcEEEEecchhHHH-HhhhcCCCCeEE
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG---ITNGYFIATNATSTF-RSIVASYPGKLI 221 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~---~~nv~~~~~d~~~~~-d~ivsnpp~~~d 221 (336)
.+.+|||||||+|..++.+|+..+..+|+..|.++ .++.++.|++.++ ..++.+...||.+.. .... .+..+|
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~--~~~~~D 121 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL--EPHSFD 121 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH--S-SSBS
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc--ccccCC
Confidence 36799999999999999999987788999999998 9999999998876 356888888885522 2222 234456
Q ss_pred EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743 222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~ 264 (336)
.|... |.... ...++.+++.+.+.|+++|.+++..
T Consensus 122 ~Ilas--Dv~Y~------~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 122 VILAS--DVLYD------EELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp EEEEE--S--S-------GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred EEEEe--cccch------HHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 54432 32211 1245799999999999999987754
No 190
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.61 E-value=4e-07 Score=84.22 Aligned_cols=126 Identities=17% Similarity=0.227 Sum_probs=91.4
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEec-chhHH------HHhhhcCCCCe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT-NATST------FRSIVASYPGK 219 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~-d~~~~------~d~ivsnpp~~ 219 (336)
+..+||==||||.+++..... +++++|+|++..|++-|+.|++..+++...++.. |+... +|.|+..|||-
T Consensus 198 G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYG 275 (347)
T COG1041 198 GELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYG 275 (347)
T ss_pred CCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCCCC
Confidence 568999999999999999877 8999999999999999999999998888777666 87652 34444444442
Q ss_pred EEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeec
Q 019743 220 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQ 289 (336)
Q Consensus 220 ~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 289 (336)
...-. ....-...+.++++.++++|++||++.|..+..+ ...+.+.+|.......
T Consensus 276 rst~~----------~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~-----~~~~~~~~f~v~~~~~ 330 (347)
T COG1041 276 RSTKI----------KGEGLDELYEEALESASEVLKPGGRIVFAAPRDP-----RHELEELGFKVLGRFT 330 (347)
T ss_pred ccccc----------ccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcc-----hhhHhhcCceEEEEEE
Confidence 21100 0000113578999999999999999999876322 2234567888765543
No 191
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.59 E-value=1.9e-07 Score=86.01 Aligned_cols=100 Identities=15% Similarity=0.200 Sum_probs=73.2
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
...|||+|||||.+++..|+.. ..+|+|+|-|.-+ +.|.+.+..|++++ ++++++.+.+. .+ |...+|.+..
T Consensus 61 dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi---~L--P~eKVDiIvS 133 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI---EL--PVEKVDIIVS 133 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE---ec--CccceeEEee
Confidence 5789999999999999999997 6789999987665 99999999999987 89999988764 23 5455665543
Q ss_pred eCCCCCCCcchhhhhcchH----HHHHHHHhcCcCCcEEEE
Q 019743 226 QCPNPDFNRPEHRWRMVQR----SLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~----~~l~~~~~~LkpgG~l~~ 262 (336)
.+---+ ++++ ..+-.=-++|+|||.++=
T Consensus 134 EWMGy~---------Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 134 EWMGYF---------LLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred hhhhHH---------HHHhhhhhhhhhhhhhccCCCceEcc
Confidence 211111 2222 333444578999998753
No 192
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.58 E-value=3.3e-08 Score=92.13 Aligned_cols=136 Identities=21% Similarity=0.226 Sum_probs=84.5
Q ss_pred CCeEEEEeccccHHHHHHHHh-------CCCCeEEEEecChHHHHHHHHHHHHhCCC--cEEEEecchh--------HHH
Q 019743 147 QPLVVDIGSGNGLFLLGMARK-------RKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNAT--------STF 209 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~-------~p~~~v~giDis~~~l~~a~~n~~~~~~~--nv~~~~~d~~--------~~~ 209 (336)
..+|+|-+||+|.+.+++.+. .+..+++|+|+++.++..|+-|+..++.. +..+.++|.+ ..|
T Consensus 47 ~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 126 (311)
T PF02384_consen 47 GDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQKF 126 (311)
T ss_dssp TEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--E
T ss_pred cceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence 568999999999999988774 36889999999999999999998776643 3467888874 258
Q ss_pred HhhhcCCCCeEEEEEe--eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH-----HHHHHHHHHHHcCC
Q 019743 210 RSIVASYPGKLILVSI--QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE-----VMLRMKQQFLEYGK 282 (336)
Q Consensus 210 d~ivsnpp~~~d~i~~--~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~-----~~~~~~~~l~~~g~ 282 (336)
|.+++||||......- ...+..+........-..-.|+..+.+.|++||++.+.....- ....+++.+.+.++
T Consensus 127 D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll~~~~ 206 (311)
T PF02384_consen 127 DVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYLLENGY 206 (311)
T ss_dssp EEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHHHHHEE
T ss_pred ccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHHHhhch
Confidence 8999999986431100 0011101100001111123588999999999999877543221 23456666665544
No 193
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.58 E-value=6.5e-07 Score=85.11 Aligned_cols=100 Identities=15% Similarity=0.219 Sum_probs=80.4
Q ss_pred CeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 148 PLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 148 ~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
.+|||+.||||..++.++++.+ -..|+++|+++.+++.+++|++.++..++.+++.|+...+.. ....+|.|.+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~----~~~~fDvIdl- 120 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRY----RNRKFHVIDI- 120 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHH----hCCCCCEEEe-
Confidence 5899999999999999999853 368999999999999999999999988899999999876432 1233565554
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 263 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~ 263 (336)
||. . ....+++.+.+.++++|.+++.
T Consensus 121 --DPf-G--------s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 121 --DPF-G--------TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred --CCC-C--------CcHHHHHHHHHhcccCCEEEEE
Confidence 442 1 1127889999999999999994
No 194
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.58 E-value=3.9e-07 Score=81.76 Aligned_cols=95 Identities=14% Similarity=0.215 Sum_probs=70.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
..+|+|||.|+|.++..+++++|+.+++..|. |..++.+++ .++++++.+|.++. + |. .|.+++.
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~~----~--P~--~D~~~l~ 165 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFDP----L--PV--ADVYLLR 165 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTTC----C--SS--ESEEEEE
T ss_pred ccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHHhh----h--cc--ccceeee
Confidence 46899999999999999999999999999997 888888877 46899999998632 1 33 5655543
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCC--cEEEE
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD--GKVFL 262 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~Lkpg--G~l~~ 262 (336)
.-- |.-.......+++++++.|+|| |++++
T Consensus 166 ~vL------h~~~d~~~~~iL~~~~~al~pg~~g~llI 197 (241)
T PF00891_consen 166 HVL------HDWSDEDCVKILRNAAAALKPGKDGRLLI 197 (241)
T ss_dssp SSG------GGS-HHHHHHHHHHHHHHSEECTTEEEEE
T ss_pred hhh------hhcchHHHHHHHHHHHHHhCCCCCCeEEE
Confidence 211 1001112358999999999999 99998
No 195
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.54 E-value=1.4e-06 Score=78.43 Aligned_cols=127 Identities=16% Similarity=0.188 Sum_probs=93.2
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC----CCcEEEEecchhHHHHhhhcCCCC-eE
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG----ITNGYFIATNATSTFRSIVASYPG-KL 220 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~----~~nv~~~~~d~~~~~d~ivsnpp~-~~ 220 (336)
+..+||=||-|.|..+..+.+..+..+++.+|+++..++.|++...... -++++++..|+...+.. -+. .+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~----~~~~~y 151 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKE----TQEEKY 151 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHT----SSST-E
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHh----ccCCcc
Confidence 4678999999999999999877667899999999999999999876532 25799999999876443 233 67
Q ss_pred EEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc----HHHHHHHHHHHHHc
Q 019743 221 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI----EEVMLRMKQQFLEY 280 (336)
Q Consensus 221 d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~~~l~~~ 280 (336)
|.|.+...+|..... .++.+.|++.+.+.|+|+|.+++.... ......+.+.+.+.
T Consensus 152 DvIi~D~~dp~~~~~----~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~ 211 (246)
T PF01564_consen 152 DVIIVDLTDPDGPAP----NLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSV 211 (246)
T ss_dssp EEEEEESSSTTSCGG----GGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTT
T ss_pred cEEEEeCCCCCCCcc----cccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHh
Confidence 888888777642211 277899999999999999999986422 23334455555544
No 196
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.53 E-value=1.6e-07 Score=93.84 Aligned_cols=73 Identities=16% Similarity=0.290 Sum_probs=55.9
Q ss_pred CCeEEEEeccccHHHHHHHHhCC--------CCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecch-----------hH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRK--------DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNA-----------TS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p--------~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~-----------~~ 207 (336)
..+|||.|||+|.++++++.+.+ +.+++|+|+++.++..|+.|+...+.-...+...|. ..
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 46899999999999999987653 267999999999999999998776521223332221 12
Q ss_pred HHHhhhcCCCCe
Q 019743 208 TFRSIVASYPGK 219 (336)
Q Consensus 208 ~~d~ivsnpp~~ 219 (336)
.||.|+.||||.
T Consensus 112 ~fD~IIgNPPy~ 123 (524)
T TIGR02987 112 LFDIVITNPPYG 123 (524)
T ss_pred cccEEEeCCCcc
Confidence 589999999996
No 197
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=4.4e-08 Score=78.76 Aligned_cols=75 Identities=12% Similarity=0.202 Sum_probs=57.5
Q ss_pred CCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743 145 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 145 ~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
-++..++|+|||.|.++++.+ ......++|+||++++++.+.+|+.+..++ +.++++|+.+. ..++ ..+|...
T Consensus 47 iEgkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfEvq-idlLqcdildl---e~~~--g~fDtav 119 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFEVQ-IDLLQCDILDL---ELKG--GIFDTAV 119 (185)
T ss_pred ccCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhhhh-hheeeeeccch---hccC--CeEeeEE
Confidence 357889999999999996554 334567999999999999999999987754 68899987643 3433 4567666
Q ss_pred ee
Q 019743 225 IQ 226 (336)
Q Consensus 225 ~~ 226 (336)
++
T Consensus 120 iN 121 (185)
T KOG3420|consen 120 IN 121 (185)
T ss_pred ec
Confidence 65
No 198
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.51 E-value=4.5e-07 Score=78.24 Aligned_cols=105 Identities=19% Similarity=0.222 Sum_probs=74.9
Q ss_pred eEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEE-EEecchhHH-HHhh--hcCCCCeEEEEE
Q 019743 149 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGY-FIATNATST-FRSI--VASYPGKLILVS 224 (336)
Q Consensus 149 ~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~-~~~~d~~~~-~d~i--vsnpp~~~d~i~ 224 (336)
+|||||||||..+..+|+.+|+.++.-.|.++..+...+..+...+++|+. -+..|+... .+.- ..+.+..+|.++
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 599999999999999999999999999999999988888888888877743 234444331 0100 001233455544
Q ss_pred e-eC--CCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 225 I-QC--PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 225 ~-~~--~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
. ++ -.|| .....+|+.+.+.|++||.+++
T Consensus 108 ~~N~lHI~p~---------~~~~~lf~~a~~~L~~gG~L~~ 139 (204)
T PF06080_consen 108 CINMLHISPW---------SAVEGLFAGAARLLKPGGLLFL 139 (204)
T ss_pred ehhHHHhcCH---------HHHHHHHHHHHHhCCCCCEEEE
Confidence 2 11 1122 2346899999999999999998
No 199
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.50 E-value=3e-07 Score=81.57 Aligned_cols=117 Identities=12% Similarity=0.150 Sum_probs=82.3
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhH----HHHhhhcCCCCeEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATS----TFRSIVASYPGKLI 221 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~----~~d~ivsnpp~~~d 221 (336)
...|||+|.|||.++..|.+. ..+|+|+|+++.|+...+++.+....+ .++++++|.+. .||.+++|-||.++
T Consensus 59 tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~fd~cVsNlPyqIS 136 (315)
T KOG0820|consen 59 TDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRFDGCVSNLPYQIS 136 (315)
T ss_pred CCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcccceeeccCCcccc
Confidence 578999999999999999988 789999999999999999887643332 48999999975 48999999999765
Q ss_pred EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH
Q 019743 222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE 267 (336)
Q Consensus 222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~ 267 (336)
.-.+.-.-++....+...-++.+.+.-.+ +-+||-.+|+..+..
T Consensus 137 Sp~vfKLL~~~~~fr~AvlmfQ~Efa~RL--va~pgd~~Ycrlsin 180 (315)
T KOG0820|consen 137 SPLVFKLLLHRPVFRCAVLMFQREFALRL--VARPGDSLYCRLSIN 180 (315)
T ss_pred CHHHHHhcCCCCCcceeeeehhhhhhhhh--ccCCCCchhceeehh
Confidence 42211000110001112224456665554 567888899866543
No 200
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.48 E-value=2.4e-06 Score=79.55 Aligned_cols=100 Identities=17% Similarity=0.256 Sum_probs=81.6
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
+.+|+|+=+|-|.+++.+|+...- .|+++|++|.+++..++|++.|++.+ +..+++|+.+.... ...+|.+.+
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~-----~~~aDrIim 262 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPE-----LGVADRIIM 262 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhc-----cccCCEEEe
Confidence 679999999999999999998533 39999999999999999999999987 89999999774211 144677776
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~ 264 (336)
+.|.. ..+|+..+.+.+++||.+.+..
T Consensus 263 ~~p~~------------a~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 263 GLPKS------------AHEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred CCCCc------------chhhHHHHHHHhhcCcEEEEEe
Confidence 65432 1378888999999999999844
No 201
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.47 E-value=2.4e-06 Score=78.04 Aligned_cols=112 Identities=16% Similarity=0.172 Sum_probs=92.1
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC----CCcEEEEecchhHHHHhhhcCCCCeEEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG----ITNGYFIATNATSTFRSIVASYPGKLIL 222 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~----~~nv~~~~~d~~~~~d~ivsnpp~~~d~ 222 (336)
..+||=||-|.|..+..+++..+-.+++.+||++..++.|++...... -++++++..|..+.+.. .+..+|.
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~----~~~~fDv 152 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRD----CEEKFDV 152 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHh----CCCcCCE
Confidence 459999999999999999999888999999999999999999876543 35799999999876432 2336788
Q ss_pred EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743 223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 266 (336)
Q Consensus 223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~ 266 (336)
|.+...||. .+...++...|++.+++.|+++|.+...++.
T Consensus 153 Ii~D~tdp~----gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 153 IIVDSTDPV----GPAEALFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred EEEcCCCCC----CcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 888777772 2344578899999999999999999997544
No 202
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.45 E-value=1.9e-07 Score=82.45 Aligned_cols=101 Identities=16% Similarity=0.179 Sum_probs=68.8
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHH------------hCCCcEEEEecchhHHHHhhhc
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL------------SGITNGYFIATNATSTFRSIVA 214 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~------------~~~~nv~~~~~d~~~~~d~ivs 214 (336)
..+||..|||.|.-+..||.+ +.+|+|+|+|+.+++.|.+.... ....+++++++|.++.-..
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~--- 112 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE--- 112 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS---
T ss_pred CCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh---
Confidence 568999999999999999988 68999999999999998443211 0123578999998763100
Q ss_pred CCCCeEEEEEee--C-CCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 215 SYPGKLILVSIQ--C-PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 215 npp~~~d~i~~~--~-~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
..+.+|.++=. + .-| + ...+++.+.+.++|+|||.+++
T Consensus 113 -~~g~fD~iyDr~~l~Alp------p---~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 113 -DVGKFDLIYDRTFLCALP------P---EMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp -CHHSEEEEEECSSTTTS-------G---GGHHHHHHHHHHCEEEEEEEEE
T ss_pred -hcCCceEEEEecccccCC------H---HHHHHHHHHHHHHhCCCCcEEE
Confidence 11236665421 1 111 1 2346899999999999999554
No 203
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.44 E-value=3.8e-06 Score=73.33 Aligned_cols=118 Identities=15% Similarity=0.242 Sum_probs=87.5
Q ss_pred EEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCe-EEEEEeeC
Q 019743 150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGK-LILVSIQC 227 (336)
Q Consensus 150 vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~-~d~i~~~~ 227 (336)
|.||||-.|.+.+.|.++..-.+++++|+++..++.|+++++.+++. ++.+..+|-++.+ +|.. +|.+.+.-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l------~~~e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVL------KPGEDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--------GGG---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccccc------CCCCCCCEEEEec
Confidence 68999999999999999987778999999999999999999999975 5999999987642 2443 56655531
Q ss_pred CCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcce
Q 019743 228 PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 285 (336)
Q Consensus 228 ~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~ 285 (336)
-......++++.....++..-.|++.... ....+++.|.++||...
T Consensus 75 ----------MGG~lI~~ILe~~~~~~~~~~~lILqP~~--~~~~LR~~L~~~gf~I~ 120 (205)
T PF04816_consen 75 ----------MGGELIIEILEAGPEKLSSAKRLILQPNT--HAYELRRWLYENGFEII 120 (205)
T ss_dssp ----------E-HHHHHHHHHHTGGGGTT--EEEEEESS---HHHHHHHHHHTTEEEE
T ss_pred ----------CCHHHHHHHHHhhHHHhccCCeEEEeCCC--ChHHHHHHHHHCCCEEE
Confidence 11234568888888888877788886643 46789999999999765
No 204
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.43 E-value=7e-07 Score=74.67 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=49.5
Q ss_pred eEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHH
Q 019743 149 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATST 208 (336)
Q Consensus 149 ~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~ 208 (336)
.|+|+.||.|.-++++|+.+ .+|+|+|+++..++.|+.|++-.|. +++.++++|+.+.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~ 60 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFEL 60 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHH
T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHH
Confidence 58999999999999999995 5799999999999999999999996 4899999999875
No 205
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.40 E-value=8.3e-07 Score=86.36 Aligned_cols=103 Identities=16% Similarity=0.217 Sum_probs=70.1
Q ss_pred CCeEEEEeccccHHHHHHHHh----CCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARK----RKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLI 221 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~----~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d 221 (336)
...|+|+|||+|.++...++. ....+|+|||.|+.|+...++.++.+++ ++|+++++|+.+. + +|..+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v-~-----lpekvD 260 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREV-E-----LPEKVD 260 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTS-C-----HSS-EE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCC-C-----CCCcee
Confidence 468999999999998766554 2457999999999999888888778887 5699999999764 1 244556
Q ss_pred EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEE
Q 019743 222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF 261 (336)
Q Consensus 222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~ 261 (336)
.++....... -.....++.+..+.+.|||+|.++
T Consensus 261 IIVSElLGsf------g~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 261 IIVSELLGSF------GDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEE---BTT------BTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEEeccCCc------cccccCHHHHHHHHhhcCCCCEEe
Confidence 5543211110 001244678889999999998653
No 206
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.38 E-value=1.2e-06 Score=71.90 Aligned_cols=59 Identities=19% Similarity=0.256 Sum_probs=53.6
Q ss_pred eEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 149 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 149 ~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+++|+|||.|.++..+++..|..+++++|.++.+++.+++|++.++..++.+++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 48999999999999999999989999999999999999999999888888888876543
No 207
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=2.3e-06 Score=81.04 Aligned_cols=136 Identities=17% Similarity=0.172 Sum_probs=91.8
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCC--CeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH---------HHhhhc
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKD--LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST---------FRSIVA 214 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~--~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~---------~d~ivs 214 (336)
.+.+|||+|++.|.=+..+|+..++ ..|+++|+|+..++..++|+++.|..|+...+.|.... ||.|+-
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLl 235 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILL 235 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEEE
Confidence 3689999999999999999988654 56799999999999999999999999988888887532 333333
Q ss_pred CCCCeEEEEEeeCCCCCCCcchh---hhhcchHHHHHHHHhcCcCCcEEEEEeCcH---HHHHHHHHHHHHcC
Q 019743 215 SYPGKLILVSIQCPNPDFNRPEH---RWRMVQRSLVEAVSDLLVHDGKVFLQSDIE---EVMLRMKQQFLEYG 281 (336)
Q Consensus 215 npp~~~d~i~~~~~dp~~~~~~~---~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~~~l~~~g 281 (336)
.+|-+-..++-..|+-+...... .-..++.+++..+.+.|||||.+...|-.. +.-+-+...++++.
T Consensus 236 DaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~ 308 (355)
T COG0144 236 DAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHP 308 (355)
T ss_pred CCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCC
Confidence 33332222221223321111111 112346899999999999999999876432 22224555666653
No 208
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=7.9e-07 Score=79.68 Aligned_cols=71 Identities=18% Similarity=0.246 Sum_probs=59.7
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH-------HHhhhcCCCCe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST-------FRSIVASYPGK 219 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~-------~d~ivsnpp~~ 219 (336)
+..|||||+|.|.++..|+++ ..+|+++|+++.+++..++... ...|++++++|+... ...+++|-||.
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY~ 106 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPSLAQPYKVVANLPYN 106 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchhhcCCCEEEEcCCCc
Confidence 578999999999999999999 4679999999999999988765 347899999999752 35578888886
Q ss_pred EE
Q 019743 220 LI 221 (336)
Q Consensus 220 ~d 221 (336)
+.
T Consensus 107 Is 108 (259)
T COG0030 107 IS 108 (259)
T ss_pred cc
Confidence 54
No 209
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.32 E-value=3.6e-06 Score=76.53 Aligned_cols=126 Identities=15% Similarity=0.101 Sum_probs=83.6
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC-CC-----cEEEEecchhH-HHHhhhcCCCCe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-IT-----NGYFIATNATS-TFRSIVASYPGK 219 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~-~~-----nv~~~~~d~~~-~~d~ivsnpp~~ 219 (336)
...++|+|||.|.=++-.-+.. -..++|+||.+-.+++|+++.+... .. .+.|+.+|.+. .+...+.++.-.
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred ccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 5679999999998777665553 3579999999999999999876542 11 37889999865 344455443333
Q ss_pred EEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHc
Q 019743 220 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEY 280 (336)
Q Consensus 220 ~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~ 280 (336)
+|.+...|.-.+.- ....-.+.++.++.+.|+|||.++-.+.. ...+...+.+.
T Consensus 197 fDivScQF~~HYaF----etee~ar~~l~Nva~~LkpGG~FIgTiPd---sd~Ii~rlr~~ 250 (389)
T KOG1975|consen 197 FDIVSCQFAFHYAF----ETEESARIALRNVAKCLKPGGVFIGTIPD---SDVIIKRLRAG 250 (389)
T ss_pred cceeeeeeeEeeee----ccHHHHHHHHHHHHhhcCCCcEEEEecCc---HHHHHHHHHhc
Confidence 67665555432200 00112357889999999999999886654 33444444443
No 210
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.31 E-value=2e-06 Score=72.26 Aligned_cols=77 Identities=10% Similarity=0.073 Sum_probs=55.7
Q ss_pred EEEecChHHHHHHHHHHHHhC---CCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHH
Q 019743 174 LGLEVNGKLVTHCRDSLQLSG---ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAV 250 (336)
Q Consensus 174 ~giDis~~~l~~a~~n~~~~~---~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~ 250 (336)
+|+|+|++|++.|+++....+ ..+++++++|+.+. +-++.++|.+++.+.-.+.. ...++++++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-----p~~~~~fD~v~~~~~l~~~~--------d~~~~l~ei 67 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-----PFDDCEFDAVTMGYGLRNVV--------DRLRAMKEM 67 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-----CCCCCCeeEEEecchhhcCC--------CHHHHHHHH
Confidence 489999999999988765322 35799999998763 22455678776654322211 224889999
Q ss_pred HhcCcCCcEEEEE
Q 019743 251 SDLLVHDGKVFLQ 263 (336)
Q Consensus 251 ~~~LkpgG~l~~~ 263 (336)
+++|||||.+++.
T Consensus 68 ~rvLkpGG~l~i~ 80 (160)
T PLN02232 68 YRVLKPGSRVSIL 80 (160)
T ss_pred HHHcCcCeEEEEE
Confidence 9999999999873
No 211
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.27 E-value=1.6e-06 Score=76.81 Aligned_cols=143 Identities=15% Similarity=0.065 Sum_probs=78.8
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHH-HHHHHH--HhCCCcEEEEecchhHHHHhhhcCCCC-eEEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTH-CRDSLQ--LSGITNGYFIATNATSTFRSIVASYPG-KLIL 222 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~-a~~n~~--~~~~~nv~~~~~d~~~~~d~ivsnpp~-~~d~ 222 (336)
+.++||+|||||.++..+++. +..+++|+|+++.|+.. .+++.+ ..+..|++ +.++.+. . ++. .+|.
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~--~~~~~~~----~--~d~~~~Dv 146 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIR--YVTPADI----F--PDFATFDV 146 (228)
T ss_pred CCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcc--cCCHhHc----C--CCceeeeE
Confidence 568999999999999999987 35689999999988875 222211 01222333 1122221 1 222 2343
Q ss_pred EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeeccccccccCCCCCC
Q 019743 223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWL 302 (336)
Q Consensus 223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~~~~~~ 302 (336)
.++. ...++..+.+.|+| |.+++-. .+|++.-.+.....|. .+|. +.|
T Consensus 147 sfiS----------------~~~~l~~i~~~l~~-~~~~~L~--KPqFE~~~~~~~~~gi-----v~~~---~~~----- 194 (228)
T TIGR00478 147 SFIS----------------LISILPELDLLLNP-NDLTLLF--KPQFEAGREKKNKKGV-----VRDK---EAI----- 194 (228)
T ss_pred EEee----------------hHhHHHHHHHHhCc-CeEEEEc--ChHhhhcHhhcCcCCe-----ecCH---HHH-----
Confidence 3332 12467888899999 8776644 3455543332222222 1220 001
Q ss_pred CCCCCCCCCHHHHHHHHcCCCeEEEEEEeCCC
Q 019743 303 GENSFGVRSDWEQHVIDRGAPMYRLMLSKPSC 334 (336)
Q Consensus 303 ~~~~~~~~t~~e~~~~~~G~~i~~~~~~~~~~ 334 (336)
.....+....+.+.|+.+..++.-+++|
T Consensus 195 ----~~~~~~~~~~~~~~~~~~~~~~~s~i~G 222 (228)
T TIGR00478 195 ----ALALHKVIDKGESPDFQEKKIIFSLTKG 222 (228)
T ss_pred ----HHHHHHHHHHHHcCCCeEeeEEECCCCC
Confidence 0223344555556677777666665544
No 212
>PRK04148 hypothetical protein; Provisional
Probab=98.27 E-value=5.2e-06 Score=67.05 Aligned_cols=52 Identities=13% Similarity=0.240 Sum_probs=43.3
Q ss_pred CCeEEEEeccccH-HHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGL-FLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~-~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+.+++|||||+|. ++..|++. +..|+|+|+++.+++.|+++ + +.++++|+++
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~----~---~~~v~dDlf~ 69 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL----G---LNAFVDDLFN 69 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh----C---CeEEECcCCC
Confidence 4689999999995 88888876 68999999999998888654 2 5788888865
No 213
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.20 E-value=6.1e-06 Score=75.30 Aligned_cols=99 Identities=18% Similarity=0.313 Sum_probs=67.6
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
+..|||+|||||.++...|+.. ..+|+++|-| +|.+.|++-++.+++. ++.++.+-+++. + -|..+|.+.
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdi-----e-LPEk~DviI- 248 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAG-AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDI-----E-LPEKVDVII- 248 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhC-cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccc-----c-CchhccEEE-
Confidence 5689999999999999888875 5789999975 6889999988877664 688888877653 1 133344332
Q ss_pred eCCCCCCCcchhhhhcchHHHHH---HHHhcCcCCcEEEE
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVE---AVSDLLVHDGKVFL 262 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~---~~~~~LkpgG~l~~ 262 (336)
.-|... .++.++.++ .++++|+|.|.++=
T Consensus 249 SEPMG~--------mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 249 SEPMGY--------MLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred eccchh--------hhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 112111 123333333 35689999998764
No 214
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.19 E-value=4.2e-05 Score=71.94 Aligned_cols=107 Identities=13% Similarity=0.182 Sum_probs=84.1
Q ss_pred CeEEEEeccccHHHHHHHHhCCC--------------------------------C-------eEEEEecChHHHHHHHH
Q 019743 148 PLVVDIGSGNGLFLLGMARKRKD--------------------------------L-------NFLGLEVNGKLVTHCRD 188 (336)
Q Consensus 148 ~~vLDiGcGsG~~~~~la~~~p~--------------------------------~-------~v~giDis~~~l~~a~~ 188 (336)
..++|-=||||.+++..|...++ + .++|+|+++.+++.|+.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~ 272 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA 272 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence 46899999999999999987642 2 27799999999999999
Q ss_pred HHHHhCCCc-EEEEecchhH------HHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEE
Q 019743 189 SLQLSGITN-GYFIATNATS------TFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF 261 (336)
Q Consensus 189 n~~~~~~~n-v~~~~~d~~~------~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~ 261 (336)
|+++.|+.. +.|.+.|+.. .++.++|||||-.- ..+. .....+|+.|.+.+.+.++--+..+
T Consensus 273 NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeR-----lg~~------~~v~~LY~~fg~~lk~~~~~ws~~v 341 (381)
T COG0116 273 NARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGER-----LGSE------ALVAKLYREFGRTLKRLLAGWSRYV 341 (381)
T ss_pred HHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchh-----cCCh------hhHHHHHHHHHHHHHHHhcCCceEE
Confidence 999999864 9999999864 36778899998532 1111 1122368899999999998888888
Q ss_pred EEeC
Q 019743 262 LQSD 265 (336)
Q Consensus 262 ~~~~ 265 (336)
|.++
T Consensus 342 ~tt~ 345 (381)
T COG0116 342 FTTS 345 (381)
T ss_pred EEcc
Confidence 8664
No 215
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.18 E-value=3.3e-05 Score=71.03 Aligned_cols=131 Identities=15% Similarity=0.145 Sum_probs=93.3
Q ss_pred CCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
+..|||+|+|.|.=+..+|...+ ...+++.|+++..+...++|+++.|..++.....|......... ...+|.+.+
T Consensus 86 ~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~---~~~fd~Vlv 162 (283)
T PF01189_consen 86 GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKP---ESKFDRVLV 162 (283)
T ss_dssp TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHH---TTTEEEEEE
T ss_pred cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccc---ccccchhhc
Confidence 57899999999999999998865 78999999999999999999999999999999888876533222 334777776
Q ss_pred eCCCCC----CCcchhh----------hhcchHHHHHHHHhcC----cCCcEEEEEeCcHH---HHHHHHHHHHHc
Q 019743 226 QCPNPD----FNRPEHR----------WRMVQRSLVEAVSDLL----VHDGKVFLQSDIEE---VMLRMKQQFLEY 280 (336)
Q Consensus 226 ~~~dp~----~~~~~~~----------~~l~~~~~l~~~~~~L----kpgG~l~~~~~~~~---~~~~~~~~l~~~ 280 (336)
.-|-.. .+.+..+ -...+.++++.+.+.+ ||||+++..|-... .-+-+...++++
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~ 238 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRH 238 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHS
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhC
Confidence 543321 1111100 0123689999999999 99999999774321 122344455555
No 216
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.18 E-value=1.8e-05 Score=69.24 Aligned_cols=124 Identities=21% Similarity=0.168 Sum_probs=90.1
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
..+++|||+|.|.=++.||-.+|+.+++-+|...+.+...+.-..+.+++|++++++.+++.-. .+++ +|.+...
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~----~~~~-~D~vtsR 142 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ----EKKQ-YDVVTSR 142 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc----cccc-CcEEEee
Confidence 4689999999999999999999999999999999999999998999999999999999887411 0222 4544432
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE--eCcHHHHHHHHHHHHHcCCcceee
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ--SDIEEVMLRMKQQFLEYGKGKLVL 287 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~--~~~~~~~~~~~~~l~~~g~~~~~~ 287 (336)
--. -...+++-+..+|++||.+.+. ....++..+..+.....++....+
T Consensus 143 Ava------------~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~ 193 (215)
T COG0357 143 AVA------------SLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKV 193 (215)
T ss_pred hcc------------chHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEE
Confidence 100 1237778888999999987431 122344555666666666665433
No 217
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1.3e-05 Score=68.69 Aligned_cols=100 Identities=18% Similarity=0.247 Sum_probs=73.0
Q ss_pred CCeEEEEeccccHHHHHHHHh--CCCCeEEEEecChHHHHHHHHHHHHhC----------CCcEEEEecchhHHHHhhhc
Q 019743 147 QPLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSG----------ITNGYFIATNATSTFRSIVA 214 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~--~p~~~v~giDis~~~l~~a~~n~~~~~----------~~nv~~~~~d~~~~~d~ivs 214 (336)
+...||+|+|||.++..+|.. .+....+|||.-++.++.+++|+.+.- ..++.++.+|....+..
T Consensus 83 G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e--- 159 (237)
T KOG1661|consen 83 GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE--- 159 (237)
T ss_pred CcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc---
Confidence 678999999999999998865 355556999999999999999987643 13477788887654211
Q ss_pred CCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743 215 SYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 265 (336)
Q Consensus 215 npp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~ 265 (336)
+.|| |.|++.-..+ ++-+++-..|++||++++...
T Consensus 160 ~a~Y--DaIhvGAaa~--------------~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 160 QAPY--DAIHVGAAAS--------------ELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred cCCc--ceEEEccCcc--------------ccHHHHHHhhccCCeEEEeec
Confidence 1233 7777653222 445666778999999999654
No 218
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.17 E-value=1.9e-06 Score=78.88 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=44.3
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh-CCC-cEEEEecch----h-------HHHHhhh
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS-GIT-NGYFIATNA----T-------STFRSIV 213 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~-~~~-nv~~~~~d~----~-------~~~d~iv 213 (336)
..++||||||.-||=-.|+.+..+++++|+||++.+++.|++|++++ +++ ++++++..- + +.||..+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 46899999999887544443334899999999999999999999999 775 577765422 1 1366667
Q ss_pred cCCCC
Q 019743 214 ASYPG 218 (336)
Q Consensus 214 snpp~ 218 (336)
+|||+
T Consensus 183 CNPPF 187 (299)
T PF05971_consen 183 CNPPF 187 (299)
T ss_dssp E----
T ss_pred cCCcc
Confidence 77775
No 219
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.16 E-value=1e-05 Score=74.34 Aligned_cols=60 Identities=12% Similarity=0.140 Sum_probs=53.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST 208 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~ 208 (336)
+..++|.+||.|..+..+++..| +.+|+|+|+++.|++.|++++.. .++++++++|..+.
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l 80 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNL 80 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHH
Confidence 56899999999999999999985 78999999999999999988765 46899999998764
No 220
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.13 E-value=9.9e-05 Score=65.82 Aligned_cols=121 Identities=16% Similarity=0.129 Sum_probs=79.4
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
..++||||.|.|..+..++..+. +|++.|.|+.|....+ +.|.+ ++..+-. .+-+..+|.|...
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~----~kg~~---vl~~~~w-------~~~~~~fDvIscL 158 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLS----KKGFT---VLDIDDW-------QQTDFKFDVISCL 158 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHH----hCCCe---EEehhhh-------hccCCceEEEeeh
Confidence 56899999999999999999874 5999999999966543 34432 3322211 1123445655432
Q ss_pred -CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE----------EeC-----------------cHHHHHHHHHHHH
Q 019743 227 -CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL----------QSD-----------------IEEVMLRMKQQFL 278 (336)
Q Consensus 227 -~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~----------~~~-----------------~~~~~~~~~~~l~ 278 (336)
..|-.. --..+++.+++.|+|+|++++ |.+ ++++...+.+.|+
T Consensus 159 NvLDRc~---------~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~ 229 (265)
T PF05219_consen 159 NVLDRCD---------RPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFE 229 (265)
T ss_pred hhhhccC---------CHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHH
Confidence 222110 013899999999999999988 222 1234444557788
Q ss_pred HcCCcceeeecccc
Q 019743 279 EYGKGKLVLVQDEC 292 (336)
Q Consensus 279 ~~g~~~~~~~~d~~ 292 (336)
..||+....++=+|
T Consensus 230 p~GF~v~~~tr~PY 243 (265)
T PF05219_consen 230 PAGFEVERWTRLPY 243 (265)
T ss_pred hcCCEEEEEeccCc
Confidence 88888777666555
No 221
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.12 E-value=8.8e-05 Score=61.49 Aligned_cols=106 Identities=15% Similarity=0.166 Sum_probs=72.7
Q ss_pred CCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhc-CCCCeEEEEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA-SYPGKLILVS 224 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivs-npp~~~d~i~ 224 (336)
+.-|||+|.|||.++-++.++ .++..++++|.|++.+....+. .+.++++.+|++.. +..++ .+...+|.++
T Consensus 49 glpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~-----~p~~~ii~gda~~l-~~~l~e~~gq~~D~vi 122 (194)
T COG3963 49 GLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL-----YPGVNIINGDAFDL-RTTLGEHKGQFFDSVI 122 (194)
T ss_pred CCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh-----CCCccccccchhhH-HHHHhhcCCCeeeeEE
Confidence 457999999999999998776 5788999999999998877553 24577999999764 21111 1233466655
Q ss_pred eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743 225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~ 264 (336)
...|--. .+- + ..-++++.+...|.+||.++.-+
T Consensus 123 S~lPll~--~P~-~---~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 123 SGLPLLN--FPM-H---RRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred ecccccc--CcH-H---HHHHHHHHHHHhcCCCCeEEEEE
Confidence 4322211 010 1 12388999999999999887744
No 222
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.10 E-value=3.9e-05 Score=71.42 Aligned_cols=113 Identities=11% Similarity=0.112 Sum_probs=72.5
Q ss_pred CCeEEEEeccccHHHHHHHHhC----CCCeEEEEecChHHHHHHHHHHHHhCCCcEEE--EecchhHHHHhhhcCC--CC
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR----KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYF--IATNATSTFRSIVASY--PG 218 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~----p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~--~~~d~~~~~d~ivsnp--p~ 218 (336)
...++|+|||+|.=+..|.... ...+++++|||.++++.+.+++.....+++.+ +++|..+.++. +++| +.
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~-l~~~~~~~ 155 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAW-LKRPENRS 155 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhh-cccccccC
Confidence 4579999999998766554432 35789999999999999999987445566555 88887665433 2222 11
Q ss_pred eEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHh-cCcCCcEEEEEeC
Q 019743 219 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD-LLVHDGKVFLQSD 265 (336)
Q Consensus 219 ~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~-~LkpgG~l~~~~~ 265 (336)
....++ |+-.......+ .-...|++.+.+ .|+|||.+++-.|
T Consensus 156 ~~r~~~--flGSsiGNf~~---~ea~~fL~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 156 RPTTIL--WLGSSIGNFSR---PEAAAFLAGFLATALSPSDSFLIGLD 198 (319)
T ss_pred CccEEE--EeCccccCCCH---HHHHHHHHHHHHhhCCCCCEEEEecC
Confidence 112211 11111111111 122489999999 9999999999544
No 223
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.90 E-value=2.8e-05 Score=67.43 Aligned_cols=106 Identities=15% Similarity=0.166 Sum_probs=59.8
Q ss_pred CCeEEEEeccccH----HHHHHHHh----CC-CCeEEEEecChHHHHHHHHHH--------------HHh-----C----
Q 019743 147 QPLVVDIGSGNGL----FLLGMARK----RK-DLNFLGLEVNGKLVTHCRDSL--------------QLS-----G---- 194 (336)
Q Consensus 147 ~~~vLDiGcGsG~----~~~~la~~----~p-~~~v~giDis~~~l~~a~~n~--------------~~~-----~---- 194 (336)
..+|+..||+||. +++.+... .+ +.+++|+|||+.+++.|++-. ++. +
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 4689999999996 33334441 12 479999999999999997621 000 0
Q ss_pred -----CCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743 195 -----ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 263 (336)
Q Consensus 195 -----~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~ 263 (336)
..+|+|.+.|+.+. ..++..+|.|+...---++. .....++++.+++.|+|||.+++-
T Consensus 112 v~~~lr~~V~F~~~NL~~~-----~~~~~~fD~I~CRNVlIYF~------~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLDP-----DPPFGRFDLIFCRNVLIYFD------PETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp E-HHHHTTEEEEE--TT-S-----------EEEEEE-SSGGGS-------HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred EChHHcCceEEEecccCCC-----CcccCCccEEEecCEEEEeC------HHHHHHHHHHHHHHcCCCCEEEEe
Confidence 02366666665541 11334577765532111111 113468999999999999999983
No 224
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.88 E-value=3.4e-05 Score=66.59 Aligned_cols=109 Identities=7% Similarity=0.059 Sum_probs=61.4
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
+...|.|+|||.+.++.++. ...+|+..|+-.. + + .+..+|+... +-++.++|.++.
T Consensus 72 ~~~viaD~GCGdA~la~~~~---~~~~V~SfDLva~------------n-~--~Vtacdia~v-----PL~~~svDv~Vf 128 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVP---NKHKVHSFDLVAP------------N-P--RVTACDIANV-----PLEDESVDVAVF 128 (219)
T ss_dssp TTS-EEEES-TT-HHHHH-----S---EEEEESS-S------------S-T--TEEES-TTS------S--TT-EEEEEE
T ss_pred CCEEEEECCCchHHHHHhcc---cCceEEEeeccCC------------C-C--CEEEecCccC-----cCCCCceeEEEE
Confidence 35689999999999986653 2357999997532 1 2 2556777442 225667776543
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe-Cc-HHHHHHHHHHHHHcCCccee
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS-DI-EEVMLRMKQQFLEYGKGKLV 286 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~-~~-~~~~~~~~~~l~~~g~~~~~ 286 (336)
...-- .-.+..++.++.|+|||||.+.+.- -. -.-.+...+.+...||....
T Consensus 129 cLSLM---------GTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~ 182 (219)
T PF05148_consen 129 CLSLM---------GTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKS 182 (219)
T ss_dssp ES------------SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEE
T ss_pred Ehhhh---------CCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEe
Confidence 21110 0135699999999999999999932 11 11234566778888998653
No 225
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.82 E-value=3.8e-05 Score=70.46 Aligned_cols=107 Identities=14% Similarity=0.180 Sum_probs=63.6
Q ss_pred CCeEEEEeccccH----HHHHHHHhCC----CCeEEEEecChHHHHHHHHHHHH----hCC-------------------
Q 019743 147 QPLVVDIGSGNGL----FLLGMARKRK----DLNFLGLEVNGKLVTHCRDSLQL----SGI------------------- 195 (336)
Q Consensus 147 ~~~vLDiGcGsG~----~~~~la~~~p----~~~v~giDis~~~l~~a~~n~~~----~~~------------------- 195 (336)
.-+|+..||+||. +++.++...+ +.+++|+|||+.+++.|++-.-. .++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 3689999999996 3343444322 46899999999999999874200 000
Q ss_pred --------CcEEEEecchhHHHHhhhcCC-CCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743 196 --------TNGYFIATNATSTFRSIVASY-PGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 196 --------~nv~~~~~d~~~~~d~ivsnp-p~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~ 264 (336)
..|+|.+.|+.+. +.| +..+|.|+....-.++. .....++++.+++.|+|||++++-+
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~-----~~~~~~~fD~I~cRNvliyF~------~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAK-----QWAVPGPFDAIFCRNVMIYFD------KTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCC-----CCccCCCcceeeHhhHHhcCC------HHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 1244444444320 001 23466554421111110 1134689999999999999988843
No 226
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.82 E-value=3.3e-05 Score=59.95 Aligned_cols=99 Identities=17% Similarity=0.221 Sum_probs=42.1
Q ss_pred EEEeccccHHHHHHHHhCCCC---eEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 151 VDIGSGNGLFLLGMARKRKDL---NFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 151 LDiGcGsG~~~~~la~~~p~~---~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
|||||..|..++.+++..+.. +++++|..+. .+.+++.+++.++ .++++++++..+.+..+- ...+|.+++.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~---~~~~dli~iD 76 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP---DGPIDLIFID 76 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH---H--EEEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC---CCCEEEEEEC
Confidence 699999999999998875443 6999999986 4444455554454 469999999987655432 3456777765
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
.. |. ......-++.+.+.|+|||.+++
T Consensus 77 g~--------H~-~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 77 GD--------HS-YEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp S------------HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CC--------CC-HHHHHHHHHHHHHHcCCCeEEEE
Confidence 21 11 01234667888999999999887
No 227
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.82 E-value=4.8e-05 Score=62.48 Aligned_cols=60 Identities=30% Similarity=0.443 Sum_probs=49.6
Q ss_pred CCeEEEEeccccHHHHHHHHh----CCCCeEEEEecChHHHHHHHHHHHHhC--C-CcEEEEecchh
Q 019743 147 QPLVVDIGSGNGLFLLGMARK----RKDLNFLGLEVNGKLVTHCRDSLQLSG--I-TNGYFIATNAT 206 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~----~p~~~v~giDis~~~l~~a~~n~~~~~--~-~nv~~~~~d~~ 206 (336)
...|+|+|||.|.++..|+.. .++.+|+|+|.++..++.|.++.++.+ . .++.+..++..
T Consensus 26 ~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 92 (141)
T PF13679_consen 26 CITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIA 92 (141)
T ss_pred CCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchh
Confidence 568999999999999999981 278999999999999999999988776 3 45666665543
No 228
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.82 E-value=4.8e-05 Score=65.76 Aligned_cols=61 Identities=15% Similarity=0.202 Sum_probs=54.9
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTF 209 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~ 209 (336)
.++|+|.-||.|.-++..|.++ ..|++||++|.-+..|+.|++-.|++ ++.|+++|+++.+
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~--~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~ 156 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQG--PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLA 156 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhC--CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHH
Confidence 5789999999999999999885 57999999999999999999999985 6999999998753
No 229
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.82 E-value=3.4e-05 Score=70.15 Aligned_cols=57 Identities=18% Similarity=0.320 Sum_probs=49.7
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+..|+|||+|.|.++..|++.. .+++++|+++.+++..+++.. ..+|++++++|+..
T Consensus 31 ~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~ 87 (262)
T PF00398_consen 31 GDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLK 87 (262)
T ss_dssp TSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTT
T ss_pred CCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh--hcccceeeecchhc
Confidence 5789999999999999999886 899999999999999887665 34689999999976
No 230
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.79 E-value=9.8e-05 Score=64.48 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=58.7
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHH-------hC--CCcEEEEecchhH--HHHhhhcC
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL-------SG--ITNGYFIATNATS--TFRSIVAS 215 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~-------~~--~~nv~~~~~d~~~--~~d~ivsn 215 (336)
...++|||||.|...+..|...+-.+.+|||+.+...+.|+...+. .+ ...+.+.++|..+ ..+.+++.
T Consensus 43 ~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~ 122 (205)
T PF08123_consen 43 DDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWSD 122 (205)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGHC
T ss_pred CCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhhcC
Confidence 5789999999999999988877555699999999998888765432 23 2458889999864 23444442
Q ss_pred CCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 216 YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 216 pp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
.+.++++.- .+. . ....++ .+....||+|-+++-
T Consensus 123 ----AdvVf~Nn~--~F~---~---~l~~~L-~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 123 ----ADVVFVNNT--CFD---P---DLNLAL-AELLLELKPGARIIS 156 (205)
T ss_dssp -----SEEEE--T--TT----H---HHHHHH-HHHHTTS-TT-EEEE
T ss_pred ----CCEEEEecc--ccC---H---HHHHHH-HHHHhcCCCCCEEEE
Confidence 244444311 000 0 112233 455567888877664
No 231
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.77 E-value=0.00076 Score=58.91 Aligned_cols=126 Identities=17% Similarity=0.172 Sum_probs=86.3
Q ss_pred CCCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH--HHHhhhcCCCCeEEE
Q 019743 146 AQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS--TFRSIVASYPGKLIL 222 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~--~~d~ivsnpp~~~d~ 222 (336)
.+.+||-+|..||.....++.- .|+..|+|+|.|+...+..-.-+++ .+|+--+..|+.. .+..++ ..+|.
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~--R~NIiPIl~DAr~P~~Y~~lv----~~VDv 146 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK--RPNIIPILEDARHPEKYRMLV----EMVDV 146 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH--STTEEEEES-TTSGGGGTTTS------EEE
T ss_pred CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc--CCceeeeeccCCChHHhhccc----ccccE
Confidence 3679999999999999999887 4689999999999876666544443 3789999999964 244333 25677
Q ss_pred EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe---------CcHHHHHHHHHHHHHcCCcceee
Q 019743 223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---------DIEEVMLRMKQQFLEYGKGKLVL 287 (336)
Q Consensus 223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~---------~~~~~~~~~~~~l~~~g~~~~~~ 287 (336)
++.....|. -.+-++.++...||+||.+++.. +....+....+.|++.+|...+.
T Consensus 147 I~~DVaQp~----------Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~ 210 (229)
T PF01269_consen 147 IFQDVAQPD----------QARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQ 210 (229)
T ss_dssp EEEE-SSTT----------HHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred EEecCCChH----------HHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheE
Confidence 766544332 22456778888999999998843 22233445566677778887544
No 232
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.72 E-value=0.00012 Score=64.87 Aligned_cols=126 Identities=11% Similarity=0.164 Sum_probs=75.2
Q ss_pred HhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEec
Q 019743 124 STITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT 203 (336)
Q Consensus 124 ~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~ 203 (336)
..++..+..|.-++....-.++++.+|.|+|||-+.++.. . ...|+..|+-+. |-+++.+
T Consensus 158 ~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~~---~--~~kV~SfDL~a~---------------~~~V~~c 217 (325)
T KOG3045|consen 158 SQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIASS---E--RHKVHSFDLVAV---------------NERVIAC 217 (325)
T ss_pred HHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhhc---c--ccceeeeeeecC---------------CCceeec
Confidence 3444445444444333333344577899999999998762 2 346888886421 2345666
Q ss_pred chhHHHHhhhcCCCCeEEEEEee-CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe---CcHHHHHHHHHHHHH
Q 019743 204 NATSTFRSIVASYPGKLILVSIQ-CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---DIEEVMLRMKQQFLE 279 (336)
Q Consensus 204 d~~~~~d~ivsnpp~~~d~i~~~-~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~---~~~~~~~~~~~~l~~ 279 (336)
|+... +-++.++|.++.. .... .....|+.++.|+|++||.+++.- -..+ ...+.+.+..
T Consensus 218 Dm~~v-----Pl~d~svDvaV~CLSLMg----------tn~~df~kEa~RiLk~gG~l~IAEv~SRf~d-v~~f~r~l~~ 281 (325)
T KOG3045|consen 218 DMRNV-----PLEDESVDVAVFCLSLMG----------TNLADFIKEANRILKPGGLLYIAEVKSRFSD-VKGFVRALTK 281 (325)
T ss_pred cccCC-----cCccCcccEEEeeHhhhc----------ccHHHHHHHHHHHhccCceEEEEehhhhccc-HHHHHHHHHH
Confidence 76542 2245566643321 1000 124689999999999999999932 1222 2236667788
Q ss_pred cCCcce
Q 019743 280 YGKGKL 285 (336)
Q Consensus 280 ~g~~~~ 285 (336)
.||...
T Consensus 282 lGF~~~ 287 (325)
T KOG3045|consen 282 LGFDVK 287 (325)
T ss_pred cCCeee
Confidence 899854
No 233
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.70 E-value=5.5e-05 Score=68.56 Aligned_cols=42 Identities=7% Similarity=0.139 Sum_probs=34.7
Q ss_pred CCeEEEEeccccH----HHHHHHHhCC-----CCeEEEEecChHHHHHHHH
Q 019743 147 QPLVVDIGSGNGL----FLLGMARKRK-----DLNFLGLEVNGKLVTHCRD 188 (336)
Q Consensus 147 ~~~vLDiGcGsG~----~~~~la~~~p-----~~~v~giDis~~~l~~a~~ 188 (336)
.-+|.-.||+||. +++.|.+..| ..+++|+|||..+++.|++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 4689999999995 5666666664 5899999999999999975
No 234
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.69 E-value=6.2e-05 Score=63.49 Aligned_cols=60 Identities=18% Similarity=0.303 Sum_probs=53.6
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST 208 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~ 208 (336)
...+.|+|+|||.++...|+. .-+|++||.+|...+.|.+|+.-.|..|+.++.+|+...
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y 92 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDY 92 (252)
T ss_pred hhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccc
Confidence 367899999999999888877 578999999999999999999888888999999999763
No 235
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.69 E-value=9.6e-05 Score=63.19 Aligned_cols=107 Identities=17% Similarity=0.185 Sum_probs=63.5
Q ss_pred CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH-----HHhhhcCCCCe
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST-----FRSIVASYPGK 219 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~-----~d~ivsnpp~~ 219 (336)
+..++||+||+.|.++..++++. +..+|+|+|+.+. ....++.++++|..+. +...+......
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhccccccC
Confidence 35789999999999999999886 6799999999876 2346778888887531 12222111235
Q ss_pred EEEEEeeCCCCCCCcc---hhh-hhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743 220 LILVSIQCPNPDFNRP---EHR-WRMVQRSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 220 ~d~i~~~~~dp~~~~~---~~~-~~l~~~~~l~~~~~~LkpgG~l~~~~ 264 (336)
+|.+.....-...... +.. .++. ...+..+...|+|||.+++..
T Consensus 92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~-~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDRNIDEFISIRLI-LSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp ESEEEE-------SSHHSSHHHHHHHH-HHHHHHHHHHHCTTEEEEEEE
T ss_pred cceeccccccCCCCchhhHHHHHHHHH-HHHHHHHHhhhcCCCEEEEEe
Confidence 6665544311110000 111 1222 233446678899999888855
No 236
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.62 E-value=0.00017 Score=62.86 Aligned_cols=104 Identities=16% Similarity=0.110 Sum_probs=68.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCC-CeEEEEEe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYP-GKLILVSI 225 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp-~~~d~i~~ 225 (336)
..+.||.|+|-|.++..+.... -.+|-.+|..+..++.|++........-..+.+..+.+. . |+ ..+|.|++
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f----~--P~~~~YDlIW~ 128 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDF----T--PEEGKYDLIWI 128 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----------TT-EEEEEE
T ss_pred cceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhc----c--CCCCcEeEEEe
Confidence 5689999999999998775443 357999999999999998765442222356666666543 1 43 57899988
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 263 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~ 263 (336)
...-.+... . ..-+|++.+...|+|+|.+++.
T Consensus 129 QW~lghLTD----~--dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 129 QWCLGHLTD----E--DLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp ES-GGGS-H----H--HHHHHHHHHHHHEEEEEEEEEE
T ss_pred hHhhccCCH----H--HHHHHHHHHHHhCcCCcEEEEE
Confidence 754333111 1 1238999999999999999993
No 237
>PRK00536 speE spermidine synthase; Provisional
Probab=97.54 E-value=0.0011 Score=60.01 Aligned_cols=117 Identities=8% Similarity=-0.075 Sum_probs=79.4
Q ss_pred CCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh--CC--CcEEEEecchhHHHHhhhcCCCCeE
Q 019743 145 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS--GI--TNGYFIATNATSTFRSIVASYPGKL 220 (336)
Q Consensus 145 ~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~--~~--~nv~~~~~d~~~~~d~ivsnpp~~~ 220 (336)
++..+||=||-|-|..+..+.+. |. +++-+||++++++.|++..... +. ++++++.. +..+....+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~--------~~~~~~~~f 140 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ--------LLDLDIKKY 140 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh--------hhhccCCcC
Confidence 35679999999999999999876 44 9999999999999999854332 12 35666541 112223456
Q ss_pred EEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH----HHHHHHHHHHHHcCCcce
Q 019743 221 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEYGKGKL 285 (336)
Q Consensus 221 d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~l~~~g~~~~ 285 (336)
|.|.+.... .+.|.+.+++.|+|||.+..++... +....+.+.+.+ .|..+
T Consensus 141 DVIIvDs~~-------------~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~-~F~~v 195 (262)
T PRK00536 141 DLIICLQEP-------------DIHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGD-FFSIA 195 (262)
T ss_pred CEEEEcCCC-------------ChHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHh-hCCce
Confidence 766665322 2478899999999999999965432 233345555554 46543
No 238
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.53 E-value=0.0016 Score=60.59 Aligned_cols=130 Identities=15% Similarity=0.203 Sum_probs=94.4
Q ss_pred CCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHh---C--C--CcEEEEecchhHHHHhhhcCCCC
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLS---G--I--TNGYFIATNATSTFRSIVASYPG 218 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~---~--~--~nv~~~~~d~~~~~d~ivsnpp~ 218 (336)
..++|=+|-|.|--+..+.+ +| -.+++-+|.+|+|++.++.+.... + . ++++++..|+++.+.. ...
T Consensus 290 a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~----a~~ 364 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT----AAD 364 (508)
T ss_pred cceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh----hcc
Confidence 56899999999988887765 45 678999999999999999654321 1 2 3599999999876433 223
Q ss_pred eEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH----HHHHHHHHHHHcCCcc
Q 019743 219 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE----VMLRMKQQFLEYGKGK 284 (336)
Q Consensus 219 ~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~----~~~~~~~~l~~~g~~~ 284 (336)
.+|.+.+.+|||... ...|+...+|-..+.+.|+++|.+.++.+..- .+-.+...+++.||..
T Consensus 365 ~fD~vIVDl~DP~tp---s~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~ 431 (508)
T COG4262 365 MFDVVIVDLPDPSTP---SIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRV 431 (508)
T ss_pred cccEEEEeCCCCCCc---chhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCccee
Confidence 568888889998622 12356677999999999999999999765321 1224556677777653
No 239
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.52 E-value=0.00064 Score=60.10 Aligned_cols=122 Identities=13% Similarity=0.143 Sum_probs=72.7
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH--------HHhhhcCCCC
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST--------FRSIVASYPG 218 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~--------~d~ivsnpp~ 218 (336)
+.+||=+|=.- ..++++|...+..+++.+||++..++..++.+++.|++ ++.++.|+... ||.++.+|||
T Consensus 45 gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~~~~~fD~f~TDPPy 122 (243)
T PF01861_consen 45 GKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEELRGKFDVFFTDPPY 122 (243)
T ss_dssp T-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTTSS-BSEEEE---S
T ss_pred CCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHHHhcCCCEEEeCCCC
Confidence 56788887333 46677777777789999999999999999999999987 99999998653 4444444444
Q ss_pred eEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCc-EEEEEeCcHH----HHHHHHHHHHHcCCcceeeecc
Q 019743 219 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG-KVFLQSDIEE----VMLRMKQQFLEYGKGKLVLVQD 290 (336)
Q Consensus 219 ~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG-~l~~~~~~~~----~~~~~~~~l~~~g~~~~~~~~d 290 (336)
.++ -..-|+......||..| ..++.....+ ....+++.+.+.|+....+..|
T Consensus 123 T~~--------------------G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~dii~~ 179 (243)
T PF01861_consen 123 TPE--------------------GLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITDIIPD 179 (243)
T ss_dssp SHH--------------------HHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEEEEEE
T ss_pred CHH--------------------HHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHHHHhh
Confidence 221 12467788888898766 6666443322 2346888899999877666544
No 240
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.51 E-value=0.00089 Score=62.11 Aligned_cols=154 Identities=14% Similarity=0.136 Sum_probs=89.3
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
-...+|+|.|.|.++-.+...+|. +-+++.+...+-.++.+.. .| |..+.+|.++. + |.. |.|++.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~-~g---V~~v~gdmfq~----~--P~~--daI~mk 243 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA-PG---VEHVAGDMFQD----T--PKG--DAIWMK 243 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc-CC---cceeccccccc----C--CCc--CeEEEE
Confidence 467899999999999999998887 6677777777776666553 33 66778887542 3 555 344443
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeeccccccccCCCCCCCCCC
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENS 306 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~~~~~~~~~~ 306 (336)
..-.+... ..--+|++++++.|+|+|.+++.-...+. +.... .-...+....|.+.. .+ ....-
T Consensus 244 WiLhdwtD------edcvkiLknC~~sL~~~GkIiv~E~V~p~-e~~~d----d~~s~v~~~~d~lm~-~~----~~~Gk 307 (342)
T KOG3178|consen 244 WILHDWTD------EDCVKILKNCKKSLPPGGKIIVVENVTPE-EDKFD----DIDSSVTRDMDLLML-TQ----TSGGK 307 (342)
T ss_pred eecccCCh------HHHHHHHHHHHHhCCCCCEEEEEeccCCC-CCCcc----ccccceeehhHHHHH-HH----hccce
Confidence 22111110 11248999999999999999983221110 00000 000000011110000 00 00011
Q ss_pred CCCCCHHHHHHHHcCCCeEEEEEE
Q 019743 307 FGVRSDWEQHVIDRGAPMYRLMLS 330 (336)
Q Consensus 307 ~~~~t~~e~~~~~~G~~i~~~~~~ 330 (336)
.....+||..+.+.|++.+...++
T Consensus 308 ert~~e~q~l~~~~gF~~~~~~~~ 331 (342)
T KOG3178|consen 308 ERTLKEFQALLPEEGFPVCMVALT 331 (342)
T ss_pred eccHHHHHhcchhhcCceeEEEec
Confidence 245578999999999999987654
No 241
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.50 E-value=0.0017 Score=52.15 Aligned_cols=102 Identities=18% Similarity=0.222 Sum_probs=64.4
Q ss_pred EEEEeccccHHHHHHHHhCCC-CeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCC-CeEEEEEee
Q 019743 150 VVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYP-GKLILVSIQ 226 (336)
Q Consensus 150 vLDiGcGsG~~~~~la~~~p~-~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp-~~~d~i~~~ 226 (336)
++|+|||+|... .++...+. ..++|+|+++.++..++..... ...+ +.+...|.... ....+. ..+|.+ ..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~-~~ 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGG---VLPFEDSASFDLV-IS 125 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccC---CCCCCCCCceeEE-ee
Confidence 999999999977 44444433 4899999999999985555433 2222 67777776541 111122 245554 32
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 265 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~ 265 (336)
....+. . .....+..+.+.|+|+|.+.+...
T Consensus 126 ~~~~~~-----~---~~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 126 LLVLHL-----L---PPAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred eeehhc-----C---CHHHHHHHHHHhcCCCcEEEEEec
Confidence 211110 0 035888999999999999988543
No 242
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.48 E-value=0.00073 Score=58.39 Aligned_cols=105 Identities=13% Similarity=0.041 Sum_probs=76.5
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
++.+||++|.|-|.+...+-.+.|.. .+-||..++.++..+.+.-.. -.||..+.+-|.+.++.+ |+..||.|+.
T Consensus 101 kggrvLnVGFGMgIidT~iQe~~p~~-H~IiE~hp~V~krmr~~gw~e-k~nViil~g~WeDvl~~L---~d~~FDGI~y 175 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEAPPDE-HWIIEAHPDVLKRMRDWGWRE-KENVIILEGRWEDVLNTL---PDKHFDGIYY 175 (271)
T ss_pred CCceEEEeccchHHHHHHHhhcCCcc-eEEEecCHHHHHHHHhccccc-ccceEEEecchHhhhccc---cccCcceeEe
Confidence 47899999999999988887666655 456799999998887765332 368999999988765443 4666887765
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 263 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~ 263 (336)
.--.+. -...+.+.+.+.++|||+|.+.+-
T Consensus 176 DTy~e~--------yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 176 DTYSEL--------YEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred echhhH--------HHHHHHHHHHHhhhcCCCceEEEe
Confidence 311111 023357888999999999999883
No 243
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.0042 Score=53.34 Aligned_cols=127 Identities=19% Similarity=0.200 Sum_probs=89.6
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH--HHHhhhcCCCCeEEEE
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS--TFRSIVASYPGKLILV 223 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~--~~d~ivsnpp~~~d~i 223 (336)
++.+||=||..||....+++.-.++..++|+|.|+......-.-+++ ..|+--+..|+.. .+..++ ..+|.+
T Consensus 76 ~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~--R~Ni~PIL~DA~~P~~Y~~~V----e~VDvi 149 (231)
T COG1889 76 EGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK--RPNIIPILEDARKPEKYRHLV----EKVDVI 149 (231)
T ss_pred CCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh--CCCceeeecccCCcHHhhhhc----ccccEE
Confidence 57899999999999999999988889999999999987776665554 3688888899864 344444 135666
Q ss_pred EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe---------CcHHHHHHHHHHHHHcCCcceeee
Q 019743 224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---------DIEEVMLRMKQQFLEYGKGKLVLV 288 (336)
Q Consensus 224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~---------~~~~~~~~~~~~l~~~g~~~~~~~ 288 (336)
+.....|. -.+-+..++...||+||.+++.. +....+..-.+.|++.+|...+..
T Consensus 150 y~DVAQp~----------Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~ 213 (231)
T COG1889 150 YQDVAQPN----------QAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVV 213 (231)
T ss_pred EEecCCch----------HHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEe
Confidence 55433332 12356778889999999666621 333445545566777888766543
No 244
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.43 E-value=0.00032 Score=69.35 Aligned_cols=117 Identities=17% Similarity=0.153 Sum_probs=77.4
Q ss_pred CCeEEEEeccccHHHHHHHHhCC----CCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchh-----------HHHH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRK----DLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNAT-----------STFR 210 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p----~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~-----------~~~d 210 (336)
..+|.|-.||||.+.+..++... +..++|.|+++.....|+-|.-.++.. ++...++|.. ..||
T Consensus 187 ~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D 266 (489)
T COG0286 187 RNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFD 266 (489)
T ss_pred CCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCcccee
Confidence 44899999999999888776542 377999999999999999999988876 3455555432 1377
Q ss_pred hhhcCCCCeEEEEE-eeCCCCCCCc----chhh-hhcchHHHHHHHHhcCcCCcEEEEE
Q 019743 211 SIVASYPGKLILVS-IQCPNPDFNR----PEHR-WRMVQRSLVEAVSDLLVHDGKVFLQ 263 (336)
Q Consensus 211 ~ivsnpp~~~d~i~-~~~~dp~~~~----~~~~-~~l~~~~~l~~~~~~LkpgG~l~~~ 263 (336)
.+++|||++.+... ......+... .... .---...+++.+...|+|||+..+.
T Consensus 267 ~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 267 FVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred EEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 88999999632111 1000000000 0000 0011258999999999999877663
No 245
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.42 E-value=0.0012 Score=62.45 Aligned_cols=117 Identities=14% Similarity=0.116 Sum_probs=86.4
Q ss_pred CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
++.+|||+|+-.|.=+..+|... ....++|.|.+...+.....|+.++|.+|......|..++-..++ |+ +||.|.
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~--~~-~fDRVL 317 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEF--PG-SFDRVL 317 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccccccc--Cc-ccceee
Confidence 47899999999998887777663 357899999999999999999999999998888888865312233 45 788877
Q ss_pred eeCCCC---------CCCcchhh-----hhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743 225 IQCPNP---------DFNRPEHR-----WRMVQRSLVEAVSDLLVHDGKVFLQSD 265 (336)
Q Consensus 225 ~~~~dp---------~~~~~~~~-----~~l~~~~~l~~~~~~LkpgG~l~~~~~ 265 (336)
+.-|-. ..+..... ....+++++..+.+.+++||.+.-.|-
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC 372 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC 372 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence 653321 11111100 112468999999999999999988663
No 246
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.40 E-value=0.0021 Score=55.92 Aligned_cols=121 Identities=10% Similarity=0.079 Sum_probs=92.0
Q ss_pred CeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 148 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 148 ~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
..+.||||-.|.+.+.|.+.++...+++.|+++..++.|.+|+.++++. .+....+|.+..+ - +...+|.+++.
T Consensus 18 ~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l---~--~~d~~d~ivIA 92 (226)
T COG2384 18 ARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVL---E--LEDEIDVIVIA 92 (226)
T ss_pred CceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcccc---C--ccCCcCEEEEe
Confidence 4499999999999999999999999999999999999999999998864 5777777765421 1 23345555543
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcce
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 285 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~ 285 (336)
-. .......++++-.+.|+.-=++++... ....++++.+..++|...
T Consensus 93 GM----------GG~lI~~ILee~~~~l~~~~rlILQPn--~~~~~LR~~L~~~~~~I~ 139 (226)
T COG2384 93 GM----------GGTLIREILEEGKEKLKGVERLILQPN--IHTYELREWLSANSYEIK 139 (226)
T ss_pred CC----------cHHHHHHHHHHhhhhhcCcceEEECCC--CCHHHHHHHHHhCCceee
Confidence 11 123457899999998876667777543 346788899999998764
No 247
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.34 E-value=0.0085 Score=54.67 Aligned_cols=60 Identities=13% Similarity=0.177 Sum_probs=52.1
Q ss_pred CCeEEEEeccccHHHHHHHHhCCC-CeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKD-LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~-~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
....+|.=-|-|.++..+.+.+|. .+++|+|.++.+++.|++.....+ .++.+++++...
T Consensus 24 ~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~ 84 (314)
T COG0275 24 DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFAN 84 (314)
T ss_pred CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHH
Confidence 478999989999999999999875 559999999999999999987765 689999987654
No 248
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.0024 Score=55.37 Aligned_cols=108 Identities=18% Similarity=0.216 Sum_probs=66.9
Q ss_pred CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH--HHHhhhcCCCCe-EE
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS--TFRSIVASYPGK-LI 221 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~--~~d~ivsnpp~~-~d 221 (336)
++.+|+|||+-.|.++..+++.. +...|+|+|+.|-. ...+|.++++|+.. .++.+...-+.. +|
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~D 113 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PIPGVIFLQGDITDEDTLEKLLEALGGAPVD 113 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cCCCceEEeeeccCccHHHHHHHHcCCCCcc
Confidence 36899999999999999998884 45669999998742 24579999999864 222222211222 24
Q ss_pred EEEeeC-CCCC-CCcchhh-hhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743 222 LVSIQC-PNPD-FNRPEHR-WRMVQRSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 222 ~i~~~~-~dp~-~~~~~~~-~~l~~~~~l~~~~~~LkpgG~l~~~~ 264 (336)
.+...+ |+.. ....+|. ....-...++-+..+|+|||.+.+..
T Consensus 114 vV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 114 VVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred eEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 433221 2111 0011111 11223566777888999999999844
No 249
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.0022 Score=59.92 Aligned_cols=99 Identities=14% Similarity=0.181 Sum_probs=78.3
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
..+|+|-=+|||.=++.+|.+.+...++.-|+||++++.+++|++.|...+...+..|+...+. +|. ..+|.|.+.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~---~~~-~~fd~IDiD 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLH---ELH-RAFDVIDID 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHH---hcC-CCccEEecC
Confidence 4579999999999999999998777999999999999999999998855677777788876532 222 345655442
Q ss_pred -CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 227 -CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 227 -~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
|-.|- .|++.+.+.++.+|.+.+
T Consensus 129 PFGSPa-------------PFlDaA~~s~~~~G~l~v 152 (380)
T COG1867 129 PFGSPA-------------PFLDAALRSVRRGGLLCV 152 (380)
T ss_pred CCCCCc-------------hHHHHHHHHhhcCCEEEE
Confidence 22232 788999999999999998
No 250
>PRK10742 putative methyltransferase; Provisional
Probab=97.30 E-value=0.0021 Score=57.35 Aligned_cols=79 Identities=20% Similarity=0.137 Sum_probs=62.7
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh------CC---CcEEEEecchhHHHHhhhcCCC
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS------GI---TNGYFIATNATSTFRSIVASYP 217 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~------~~---~nv~~~~~d~~~~~d~ivsnpp 217 (336)
.++|||+-+|+|..++.+|.+ +++|+++|.++.+....+.++++. +. .+++++++|..+.+.. .+
T Consensus 89 ~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~----~~ 162 (250)
T PRK10742 89 LPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD----IT 162 (250)
T ss_pred CCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh----CC
Confidence 468999999999999999988 788999999999999999998874 22 5799999999887543 12
Q ss_pred CeEEEEEeeCCCCC
Q 019743 218 GKLILVSIQCPNPD 231 (336)
Q Consensus 218 ~~~d~i~~~~~dp~ 231 (336)
..+|.|++.-+-|+
T Consensus 163 ~~fDVVYlDPMfp~ 176 (250)
T PRK10742 163 PRPQVVYLDPMFPH 176 (250)
T ss_pred CCCcEEEECCCCCC
Confidence 35787776533333
No 251
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.29 E-value=0.0014 Score=62.50 Aligned_cols=104 Identities=13% Similarity=0.153 Sum_probs=75.2
Q ss_pred CCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHhCCCc--EEEEecchhHHHHhhhcCCCCeEEEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITN--GYFIATNATSTFRSIVASYPGKLILV 223 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~~~~n--v~~~~~d~~~~~d~ivsnpp~~~d~i 223 (336)
..++||-=+|||.=++.++++.+ ...|++-|+|+++++..++|++.|+++. +++.+.|+...+- .....+|.|
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~----~~~~~fD~I 125 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY----SRQERFDVI 125 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC----HSTT-EEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh----hccccCCEE
Confidence 35899999999999999999954 4689999999999999999999999875 8888999977542 124456766
Q ss_pred EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE-EeCc
Q 019743 224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL-QSDI 266 (336)
Q Consensus 224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~-~~~~ 266 (336)
.+. |+- ---.|++.+.+.++.||.+++ .||.
T Consensus 126 DlD---PfG---------Sp~pfldsA~~~v~~gGll~vTaTD~ 157 (377)
T PF02005_consen 126 DLD---PFG---------SPAPFLDSALQAVKDGGLLCVTATDT 157 (377)
T ss_dssp EE-----SS-----------HHHHHHHHHHEEEEEEEEEEE--H
T ss_pred EeC---CCC---------CccHhHHHHHHHhhcCCEEEEecccc
Confidence 553 321 012899999999999999999 3443
No 252
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.22 E-value=0.0029 Score=58.50 Aligned_cols=61 Identities=11% Similarity=0.137 Sum_probs=53.6
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST 208 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~ 208 (336)
+..++|.=||.|..+..+++..|+.+++|+|.++.+++.|+++....+ .++++++++..+.
T Consensus 21 ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l 81 (305)
T TIGR00006 21 DGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANF 81 (305)
T ss_pred CCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHH
Confidence 568999999999999999998877999999999999999999886543 5799999987664
No 253
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.20 E-value=0.00083 Score=57.28 Aligned_cols=57 Identities=21% Similarity=0.345 Sum_probs=49.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecch
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNA 205 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~ 205 (336)
+.+|||+|+|||..++..|+.. ...|++.|+.+...+.++.|++.|+. ++.+.+.|.
T Consensus 80 gkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~ 136 (218)
T COG3897 80 GKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADL 136 (218)
T ss_pred cceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccc
Confidence 5689999999999999998875 56799999999999999999998884 588888765
No 254
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.10 E-value=0.00052 Score=66.45 Aligned_cols=119 Identities=16% Similarity=0.134 Sum_probs=67.2
Q ss_pred CeEEEEeccccHHHHHHHHhCCCCeEEEE---ecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743 148 PLVVDIGSGNGLFLLGMARKRKDLNFLGL---EVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 148 ~~vLDiGcGsG~~~~~la~~~p~~~v~gi---Dis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
..+||+|||+|.++..|..+ +.....+ |..+..++.|.++ |+.-+ .+-+.. .-+..|..+||.++
T Consensus 119 R~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfaleR----Gvpa~---~~~~~s---~rLPfp~~~fDmvH 186 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALER----GVPAM---IGVLGS---QRLPFPSNAFDMVH 186 (506)
T ss_pred EEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhhc----Ccchh---hhhhcc---ccccCCccchhhhh
Confidence 46899999999999999877 3333332 3444556665432 43311 111100 11233677788765
Q ss_pred ee-CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc---------HHHHHHHHHHHHHcCCccee
Q 019743 225 IQ-CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI---------EEVMLRMKQQFLEYGKGKLV 286 (336)
Q Consensus 225 ~~-~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~---------~~~~~~~~~~l~~~g~~~~~ 286 (336)
.. ...||.... ..++-++-|+|+|||++++.... ......+.++.+..-|+.+.
T Consensus 187 csrc~i~W~~~~--------g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va 250 (506)
T PF03141_consen 187 CSRCLIPWHPND--------GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVA 250 (506)
T ss_pred cccccccchhcc--------cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHhe
Confidence 43 334552211 24677899999999999984321 12233455555555565543
No 255
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.10 E-value=0.013 Score=47.81 Aligned_cols=108 Identities=11% Similarity=0.140 Sum_probs=62.7
Q ss_pred eEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEEeeCC-CCCCCcchhhhhcchHHHHHH
Q 019743 172 NFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVSIQCP-NPDFNRPEHRWRMVQRSLVEA 249 (336)
Q Consensus 172 ~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~-dp~~~~~~~~~~l~~~~~l~~ 249 (336)
+|+|+||-+.|++.+++++++.++. ++++++.+=.. ++..+ |+..++.+..+.- -|--.+.-.......-..++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~-l~~~i--~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~ 77 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHEN-LDEYI--PEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEA 77 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGG-GGGT----S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHH-HHhhC--ccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHH
Confidence 5899999999999999999998875 59888866444 45555 2335666655421 121000001112223477889
Q ss_pred HHhcCcCCcEEEEEe--CcH---HHHHHHHHHHHHcCC
Q 019743 250 VSDLLVHDGKVFLQS--DIE---EVMLRMKQQFLEYGK 282 (336)
Q Consensus 250 ~~~~LkpgG~l~~~~--~~~---~~~~~~~~~l~~~g~ 282 (336)
+.+.|+|||.+.+.. +.. .-.+.+.+.+....-
T Consensus 78 al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~ 115 (140)
T PF06962_consen 78 ALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQ 115 (140)
T ss_dssp HHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-T
T ss_pred HHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCc
Confidence 999999999999844 222 223455566655543
No 256
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.04 E-value=0.0015 Score=58.92 Aligned_cols=128 Identities=14% Similarity=0.113 Sum_probs=67.6
Q ss_pred CeEEEEeccc--cHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCC--eEE-
Q 019743 148 PLVVDIGSGN--GLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPG--KLI- 221 (336)
Q Consensus 148 ~~vLDiGcGs--G~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~--~~d- 221 (336)
..+||||||- -...-.+|++ .|+++|+-+|++|-.+..++.-+..+......++++|+.+. +.|+.+|.- .+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p-~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDP-EAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-H-HHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCH-HHHhcCHHHHhcCCC
Confidence 4699999993 2344556665 79999999999999999998876544322389999999763 223322111 011
Q ss_pred ----EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH----HHHHHHHHHHHHcC
Q 019743 222 ----LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE----EVMLRMKQQFLEYG 281 (336)
Q Consensus 222 ----~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~l~~~g 281 (336)
.+.+...-++.. ....-..+++.+.+.|.||.++.+.+... ...+.+.+.+.+.+
T Consensus 149 ~rPVavll~~vLh~v~-----D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~ 211 (267)
T PF04672_consen 149 DRPVAVLLVAVLHFVP-----DDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAG 211 (267)
T ss_dssp TS--EEEECT-GGGS------CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCC
T ss_pred CCCeeeeeeeeeccCC-----CccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCC
Confidence 111110000000 00123589999999999999999955322 22344555555544
No 257
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.03 E-value=0.0017 Score=56.78 Aligned_cols=100 Identities=14% Similarity=0.119 Sum_probs=63.7
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
.+.++|||||-|.+...|..+. --+++-+|-|..|++.++.-- ..++. +..+.+|-+. +| | ...++|.+...
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~q-dp~i~-~~~~v~DEE~-Ld--f--~ens~DLiisS 144 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQ-DPSIE-TSYFVGDEEF-LD--F--KENSVDLIISS 144 (325)
T ss_pred CcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccC-CCceE-EEEEecchhc-cc--c--cccchhhhhhh
Confidence 4679999999999999998775 457899999999999886421 12222 3444555332 22 1 23344433322
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
..-.|.. ..+..+.++...|||+|.|+-
T Consensus 145 lslHW~N--------dLPg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 145 LSLHWTN--------DLPGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred hhhhhhc--------cCchHHHHHHHhcCCCccchh
Confidence 2222311 124777888899999998765
No 258
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.83 E-value=0.011 Score=52.09 Aligned_cols=150 Identities=17% Similarity=0.087 Sum_probs=90.6
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcE-EEEecchhHHHHhhh-cCCCCeEEEE
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNG-YFIATNATSTFRSIV-ASYPGKLILV 223 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv-~~~~~d~~~~~d~iv-snpp~~~d~i 223 (336)
++.++||||+.||.|+..+.++. ..+|+|+|..-..+..--++ -.++ .+...|+....+..+ ..|+..+.
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~-----d~rV~~~E~tN~r~l~~~~~~~~~d~~v~-- 150 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRN-----DPRVIVLERTNVRYLTPEDFTEKPDLIVI-- 150 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhc-----CCcEEEEecCChhhCCHHHcccCCCeEEE--
Confidence 46789999999999999888774 57899999998776653221 1233 334455543322222 11111111
Q ss_pred EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeeeccccccccCCCCCCC
Q 019743 224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLG 303 (336)
Q Consensus 224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~d~~~~~~~~~~~~~ 303 (336)
.+.| .-...++..+...|+|+|.+.+-. .+|++.-++.....|. .+|..
T Consensus 151 DvSF-------------ISL~~iLp~l~~l~~~~~~~v~Lv--KPQFEagr~~v~kkGv-----v~d~~----------- 199 (245)
T COG1189 151 DVSF-------------ISLKLILPALLLLLKDGGDLVLLV--KPQFEAGREQVGKKGV-----VRDPK----------- 199 (245)
T ss_pred Eeeh-------------hhHHHHHHHHHHhcCCCceEEEEe--cchhhhhhhhcCcCce-----ecCcc-----------
Confidence 1111 113478889999999999888755 3567776666543332 22211
Q ss_pred CCCCCCCCHHHHHHHHcCCCeEEEEEEeCCCC
Q 019743 304 ENSFGVRSDWEQHVIDRGAPMYRLMLSKPSCV 335 (336)
Q Consensus 304 ~~~~~~~t~~e~~~~~~G~~i~~~~~~~~~~~ 335 (336)
.......+.+....+.|+.+..+.+.++.+.
T Consensus 200 -~~~~v~~~i~~~~~~~g~~~~gl~~Spi~G~ 230 (245)
T COG1189 200 -LHAEVLSKIENFAKELGFQVKGLIKSPIKGG 230 (245)
T ss_pred -hHHHHHHHHHHHHhhcCcEEeeeEccCccCC
Confidence 1113445667777777888887777776553
No 259
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.81 E-value=0.0019 Score=55.50 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=34.9
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHH
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRD 188 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~ 188 (336)
...++||+|.|.|.++..++..+ .+|++.|.|..|..+.++
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~k 152 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKK 152 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhh
Confidence 45789999999999999998775 359999999999887654
No 260
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.0011 Score=54.77 Aligned_cols=127 Identities=17% Similarity=0.140 Sum_probs=77.6
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh---CCCcEEEEecchhHHHHhhhcCCCCeEEE
Q 019743 147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS---GITNGYFIATNATSTFRSIVASYPGKLIL 222 (336)
Q Consensus 147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~---~~~nv~~~~~d~~~~~d~ivsnpp~~~d~ 222 (336)
+.+|||+|-| +|-.++.+|...|...|...|-++++++..++-...+ +.+.+..+.-++...-. +-....||.
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqs---q~eq~tFDi 106 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQS---QQEQHTFDI 106 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHH---HHhhCcccE
Confidence 4679999999 6777788899999999999999999998887665444 23444444433322100 001122343
Q ss_pred EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH-HHHHHHHHHHHHcCCcc
Q 019743 223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE-EVMLRMKQQFLEYGKGK 284 (336)
Q Consensus 223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~~l~~~g~~~ 284 (336)
|.. .|-.+-. .....+++.+..+|+|.|...+.+.-+ +..+.+.......||..
T Consensus 107 Ila--ADClFfd------E~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v 161 (201)
T KOG3201|consen 107 ILA--ADCLFFD------EHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTV 161 (201)
T ss_pred EEe--ccchhHH------HHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEE
Confidence 221 1111101 123588999999999999977755432 22334555556667764
No 261
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.70 E-value=0.013 Score=53.38 Aligned_cols=106 Identities=13% Similarity=0.122 Sum_probs=61.9
Q ss_pred CeEEEEecccc-HHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHH-HhCC-CcEEEEecchhHHHHhhhcCCCCeEEEE
Q 019743 148 PLVVDIGSGNG-LFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQ-LSGI-TNGYFIATNATSTFRSIVASYPGKLILV 223 (336)
Q Consensus 148 ~~vLDiGcGsG-~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~-~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d~i 223 (336)
.+|+=||||.= ..++.++++ .++..|+++|+++++++.|++-++ ..++ .++.|+.+|..+.-.. -..+|.+
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d-----l~~~DvV 196 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD-----LKEYDVV 196 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG---------SEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc-----cccCCEE
Confidence 48999999954 445667765 468899999999999999998776 3344 4699999998653111 1124555
Q ss_pred EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743 224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 265 (336)
Q Consensus 224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~ 265 (336)
++.-.-.. .+.--.+++..+.+.++||..+.+.+.
T Consensus 197 ~lAalVg~-------~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 197 FLAALVGM-------DAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp EE-TT-S-----------SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred EEhhhccc-------ccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 54321110 001124899999999999999999764
No 262
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.011 Score=48.09 Aligned_cols=91 Identities=21% Similarity=0.252 Sum_probs=68.9
Q ss_pred CcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC
Q 019743 115 GPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG 194 (336)
Q Consensus 115 gpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~ 194 (336)
-|.|.++++.+++-... ++....+|||+|.|.+.++.|+.. -..-+|+|+++-.+..++-.+-+++
T Consensus 54 VpAtteQv~nVLSll~~-------------n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g 119 (199)
T KOG4058|consen 54 VPATTEQVENVLSLLRG-------------NPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAG 119 (199)
T ss_pred cCccHHHHHHHHHHccC-------------CCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHh
Confidence 37788888888775442 235789999999999999998875 4567899999999999999988888
Q ss_pred CC-cEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743 195 IT-NGYFIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 195 ~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
+. ..+|..-|+... |+ -||....++
T Consensus 120 ~~k~trf~RkdlwK~-dl----~dy~~vviF 145 (199)
T KOG4058|consen 120 CAKSTRFRRKDLWKV-DL----RDYRNVVIF 145 (199)
T ss_pred cccchhhhhhhhhhc-cc----cccceEEEe
Confidence 64 578888887653 32 466544433
No 263
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.49 E-value=0.0049 Score=53.94 Aligned_cols=55 Identities=15% Similarity=0.292 Sum_probs=43.5
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh-CCCc-EEE
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS-GITN-GYF 200 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~-~~~n-v~~ 200 (336)
++.++||||+|.-||=-.+..+.-+.+++|.||++-+++.|+.++..| ++++ +++
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~l 134 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRL 134 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeE
Confidence 367899999999998655554433789999999999999999999877 4543 444
No 264
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.47 E-value=0.008 Score=55.59 Aligned_cols=77 Identities=14% Similarity=0.084 Sum_probs=55.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcC-CCCeEEEEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVAS-YPGKLILVS 224 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsn-pp~~~d~i~ 224 (336)
+..++|.=.|.|.++.++.+..|+++++|+|.++.+++.|++++... -+++.+++++..+..+.+-.+ ....+|.+.
T Consensus 21 ~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~l~~~~~~~~~dgiL 98 (310)
T PF01795_consen 21 GGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEYLKELNGINKVDGIL 98 (310)
T ss_dssp T-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHHHHHTTTTS-EEEEE
T ss_pred CceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHHHHHccCCCccCEEE
Confidence 56899988999999999999998999999999999999998876543 357999999877654444443 344567664
No 265
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.31 E-value=0.036 Score=51.81 Aligned_cols=86 Identities=12% Similarity=0.102 Sum_probs=57.3
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
.+.++|||||++|.++..++++ +.+|+|||..+-. .++ ....+|..++.|.+.... ++..+|.++.
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~-----~~L--~~~~~V~h~~~d~fr~~p-----~~~~vDwvVc 276 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMA-----QSL--MDTGQVEHLRADGFKFRP-----PRKNVDWLVC 276 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcC-----Hhh--hCCCCEEEEeccCcccCC-----CCCCCCEEEE
Confidence 3679999999999999999988 6799999965421 111 234579999988765411 1344566555
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCC
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD 257 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~Lkpg 257 (336)
.+.+.. .+..+.+.++|..|
T Consensus 277 Dmve~P------------~rva~lm~~Wl~~g 296 (357)
T PRK11760 277 DMVEKP------------ARVAELMAQWLVNG 296 (357)
T ss_pred ecccCH------------HHHHHHHHHHHhcC
Confidence 443221 25666677777655
No 266
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.18 E-value=0.0078 Score=52.20 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=36.1
Q ss_pred CCeEEEEeccccHHHHHHHHhCCC--CeEEEEecChHHHHHHHHHH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKD--LNFLGLEVNGKLVTHCRDSL 190 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~--~~v~giDis~~~l~~a~~n~ 190 (336)
.-.+.|=|||+|.+...+...+++ .+++|.||++++++.|++|+
T Consensus 52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL 97 (246)
T PF11599_consen 52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNL 97 (246)
T ss_dssp -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHH
T ss_pred CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhh
Confidence 457899999999999888877644 57999999999999999987
No 267
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=96.17 E-value=0.007 Score=55.34 Aligned_cols=69 Identities=12% Similarity=0.230 Sum_probs=53.3
Q ss_pred EEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhH-------------HHHhhhcC
Q 019743 150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATS-------------TFRSIVAS 215 (336)
Q Consensus 150 vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~-------------~~d~ivsn 215 (336)
=+|||+|.-|+=-.+..+.-+..++++|++...+..|+.|+.+++++ .+.+++.+... .||...+|
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 48999999988766655555789999999999999999999998875 45555543211 37778888
Q ss_pred CCC
Q 019743 216 YPG 218 (336)
Q Consensus 216 pp~ 218 (336)
||+
T Consensus 186 PPF 188 (419)
T KOG2912|consen 186 PPF 188 (419)
T ss_pred Cch
Confidence 886
No 268
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.16 E-value=0.0084 Score=52.06 Aligned_cols=121 Identities=17% Similarity=0.192 Sum_probs=59.3
Q ss_pred CcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHh---C-CCCeEEEEecChHHHHHHHHHH
Q 019743 115 GPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARK---R-KDLNFLGLEVNGKLVTHCRDSL 190 (336)
Q Consensus 115 gpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~---~-p~~~v~giDis~~~l~~a~~n~ 190 (336)
.|...-.|.+.+-+.+ ...|+|+|.-.|..++..|.. . ++.+|+|+||+..........
T Consensus 17 ~P~Dm~~~qeli~~~k----------------Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e- 79 (206)
T PF04989_consen 17 YPQDMVAYQELIWELK----------------PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIE- 79 (206)
T ss_dssp -HHHHHHHHHHHHHH------------------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGG-
T ss_pred CHHHHHHHHHHHHHhC----------------CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHh-
Confidence 3666667777766544 568999999999888877653 3 789999999965544332221
Q ss_pred HHhCC-CcEEEEecchhHH--HHhhh--cCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743 191 QLSGI-TNGYFIATNATST--FRSIV--ASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 263 (336)
Q Consensus 191 ~~~~~-~nv~~~~~d~~~~--~d~iv--snpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~ 263 (336)
.+.+ ++++++++|..+. ++.+- ..++. ...+ +. |.. |... ..-+-++.....+++|++++++
T Consensus 80 -~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~-~vlV-il--Ds~-----H~~~-hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 80 -SHPMSPRITFIQGDSIDPEIVDQVRELASPPH-PVLV-IL--DSS-----HTHE-HVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp -G----TTEEEEES-SSSTHHHHTSGSS----S-SEEE-EE--SS---------S-SHHHHHHHHHHT--TT-EEEET
T ss_pred -hccccCceEEEECCCCCHHHHHHHHHhhccCC-ceEE-EE--CCC-----ccHH-HHHHHHHHhCccCCCCCEEEEE
Confidence 1222 5799999998642 22211 11111 1111 11 221 1111 1125566688999999999883
No 269
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.16 E-value=0.043 Score=50.23 Aligned_cols=127 Identities=15% Similarity=0.124 Sum_probs=69.0
Q ss_pred CCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
..+|||+|||.|.-+.+....++ -.+++++|.|+.|++.++.-++............+.. ....+.++. |.+..
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~--DLvi~ 108 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLY---RDFLPFPPD--DLVIA 108 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhh---cccccCCCC--cEEEE
Confidence 46899999999987777766665 3579999999999999887654321111000011111 000111222 44433
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHH---HHHHHHHHcCCcce
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVML---RMKQQFLEYGKGKL 285 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~~~l~~~g~~~~ 285 (336)
.+.--.... . ....+++.+.+.+.+ =.+++|.+...-++ .+++.+.+.++...
T Consensus 109 s~~L~EL~~---~---~r~~lv~~LW~~~~~-~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~ 164 (274)
T PF09243_consen 109 SYVLNELPS---A---ARAELVRSLWNKTAP-VLVLVEPGTPAGFRRIAEARDQLLEKGAHVV 164 (274)
T ss_pred ehhhhcCCc---h---HHHHHHHHHHHhccC-cEEEEcCCChHHHHHHHHHHHHHhhCCCceE
Confidence 321111111 1 124778888777766 34444655443333 55666766666543
No 270
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.14 E-value=0.066 Score=55.26 Aligned_cols=126 Identities=13% Similarity=0.060 Sum_probs=78.8
Q ss_pred CCeEEEEeccccHHHHHHHHhC-------C-----CCeEEEEecCh---HHHHHHHHH-----------HHH-----hCC
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR-------K-----DLNFLGLEVNG---KLVTHCRDS-----------LQL-----SGI 195 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~-------p-----~~~v~giDis~---~~l~~a~~n-----------~~~-----~~~ 195 (336)
.-+|+|+|.|+|...+...+.+ | ..+++++|..| +.+..+.+. ... .|+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 4689999999998666655433 3 46899999654 333333221 111 121
Q ss_pred -------C--cEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743 196 -------T--NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 266 (336)
Q Consensus 196 -------~--nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~ 266 (336)
. +++++.+|+.+.+..+ +..+|.+++. +...... ..+-...+++.+.+.++|||++.--+
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~----~~~~d~~~lD---~FsP~~n--p~~W~~~~~~~l~~~~~~~~~~~t~t-- 206 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQL----DARADAWFLD---GFAPAKN--PDMWSPNLFNALARLARPGATLATFT-- 206 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhc----cccccEEEeC---CCCCccC--hhhccHHHHHHHHHHhCCCCEEEEee--
Confidence 1 3556778887754332 2346666543 2111111 12456799999999999999988543
Q ss_pred HHHHHHHHHHHHHcCCcce
Q 019743 267 EEVMLRMKQQFLEYGKGKL 285 (336)
Q Consensus 267 ~~~~~~~~~~l~~~g~~~~ 285 (336)
.+..+++-|.+.||...
T Consensus 207 --~a~~vr~~l~~~GF~v~ 223 (662)
T PRK01747 207 --SAGFVRRGLQEAGFTVR 223 (662)
T ss_pred --hHHHHHHHHHHcCCeee
Confidence 36678899999999753
No 271
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.10 E-value=0.079 Score=45.11 Aligned_cols=107 Identities=18% Similarity=0.195 Sum_probs=63.6
Q ss_pred CCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEec-chhHH--HHhhh-cCCCCeEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT-NATST--FRSIV-ASYPGKLI 221 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~-d~~~~--~d~iv-snpp~~~d 221 (336)
+.+|||+||..|.++.-.-++ .|+.-++|||+-.- .....+.++++ |+.+. ...|+ +.|...+|
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~Vd 138 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKIFEALPNRPVD 138 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHHHHhCCCCccc
Confidence 679999999999999887777 49999999998431 12344666666 55331 11111 22445566
Q ss_pred EEEeeC-CCCC-CCcchhhhh-cchHHHHHHHHhcCcCCcEEEEEe
Q 019743 222 LVSIQC-PNPD-FNRPEHRWR-MVQRSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 222 ~i~~~~-~dp~-~~~~~~~~~-l~~~~~l~~~~~~LkpgG~l~~~~ 264 (336)
.+...+ |++. .....|.+. ..-...+.-+...++|+|.+++..
T Consensus 139 vVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~ 184 (232)
T KOG4589|consen 139 VVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL 184 (232)
T ss_pred EEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 655443 3322 111222211 111334455567889999999965
No 272
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.99 E-value=0.03 Score=49.95 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=45.8
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchh
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNAT 206 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~ 206 (336)
..+|+|||||-=-+++......|+..++|+||+..+++...+-....+. +......|..
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~ 164 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLL 164 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TT
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeee
Confidence 5689999999999999888788889999999999999999988887774 3555555643
No 273
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=95.94 E-value=0.004 Score=57.49 Aligned_cols=116 Identities=16% Similarity=0.181 Sum_probs=79.7
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHH-------HHHHHHHHhCCCc--EEEEecchhH-------HH
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVT-------HCRDSLQLSGITN--GYFIATNATS-------TF 209 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~-------~a~~n~~~~~~~n--v~~~~~d~~~-------~~ 209 (336)
++..|.|==.|||.+.++.|.- ++.|+|.||+-.++. ..+.|.++.|... +.++.+|... .|
T Consensus 208 pGdivyDPFVGTGslLvsaa~F--Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~f 285 (421)
T KOG2671|consen 208 PGDIVYDPFVGTGSLLVSAAHF--GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKF 285 (421)
T ss_pred CCCEEecCccccCceeeehhhh--cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhccee
Confidence 3678999999999999988866 789999999998887 3466777777432 5566777643 48
Q ss_pred HhhhcCCCCeEEEE---E-----eeC------CCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743 210 RSIVASYPGKLILV---S-----IQC------PNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 263 (336)
Q Consensus 210 d~ivsnpp~~~d~i---~-----~~~------~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~ 263 (336)
|.|++.|||-+..- . ... .+..+...+.........++.-.++.|..||++.+-
T Consensus 286 DaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w 353 (421)
T KOG2671|consen 286 DAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFW 353 (421)
T ss_pred eEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEe
Confidence 99999999864321 0 000 011111111122234568889999999999999983
No 274
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.85 E-value=0.0069 Score=46.66 Aligned_cols=41 Identities=24% Similarity=0.494 Sum_probs=30.4
Q ss_pred cccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecCh
Q 019743 138 WSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNG 180 (336)
Q Consensus 138 ~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~ 180 (336)
|...+...+.+..+|||||+|.+.--|.++ +....|+|...
T Consensus 50 W~~~~~~~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~R~ 90 (112)
T PF07757_consen 50 WRDMYGEQKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDARR 90 (112)
T ss_pred HhcccCCCCCCceEEccCCchHHHHHHHhC--CCCcccccccc
Confidence 443333334567999999999998888877 67788999653
No 275
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=95.70 E-value=0.017 Score=54.84 Aligned_cols=97 Identities=16% Similarity=0.163 Sum_probs=67.7
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
...++|+|||.|.....++.- ..+.++|+|.++..+..+........+.| ..++.+|..+. ++ ++..+|.+..
T Consensus 111 ~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~---~f--edn~fd~v~~ 184 (364)
T KOG1269|consen 111 GSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKM---PF--EDNTFDGVRF 184 (364)
T ss_pred cccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcC---CC--CccccCcEEE
Confidence 347899999999998888754 47899999999999888887777666654 23344444332 12 2334443332
Q ss_pred e-----CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 226 Q-----CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 226 ~-----~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
. .|++ ...+++++++++|||.+..
T Consensus 185 ld~~~~~~~~-------------~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 185 LEVVCHAPDL-------------EKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred EeecccCCcH-------------HHHHHHHhcccCCCceEEe
Confidence 1 2222 3888999999999999988
No 276
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=95.65 E-value=0.056 Score=48.74 Aligned_cols=120 Identities=10% Similarity=0.094 Sum_probs=80.9
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH--------HHHhhhcCCCC
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS--------TFRSIVASYPG 218 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~--------~~d~ivsnpp~ 218 (336)
+..|+=+| ---..++++|...--.++..+||++..+....+-+++.|..|+..+..|+.+ .||.++..||+
T Consensus 153 gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPpe 231 (354)
T COG1568 153 GKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPPE 231 (354)
T ss_pred CCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCchh
Confidence 45688888 5555667776654456899999999999999999999999999988888765 24544444444
Q ss_pred eEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCC---cEEEEEeC--cHHHHHHHHH-HHHHcCCcceee
Q 019743 219 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHD---GKVFLQSD--IEEVMLRMKQ-QFLEYGKGKLVL 287 (336)
Q Consensus 219 ~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~Lkpg---G~l~~~~~--~~~~~~~~~~-~l~~~g~~~~~~ 287 (336)
.+. -.+.|+..-...||.- |++.+..- ..+-..++++ +..+.|+.....
T Consensus 232 Ti~--------------------alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~gvVITdi 286 (354)
T COG1568 232 TIK--------------------ALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEMGVVITDI 286 (354)
T ss_pred hHH--------------------HHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhcCeeeHhh
Confidence 321 1245666666678866 88888432 2233456777 555667654433
No 277
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=95.64 E-value=0.057 Score=45.55 Aligned_cols=134 Identities=16% Similarity=0.157 Sum_probs=76.9
Q ss_pred EeccccHHHHHHHHhCC-CCeEEEEecC--hHHHHH---HHHHHHHhCCCcEEEE-ecchhHHHHhhhcCCCCeEEEEEe
Q 019743 153 IGSGNGLFLLGMARKRK-DLNFLGLEVN--GKLVTH---CRDSLQLSGITNGYFI-ATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 153 iGcGsG~~~~~la~~~p-~~~v~giDis--~~~l~~---a~~n~~~~~~~nv~~~-~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
+|=|.=.++.+||+.+. ..++++.-.+ ++..+. +..|++.....++.++ -.|+... ..........+|.|..
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l-~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKL-HKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcc-cccccccCCcCCEEEE
Confidence 45555567777888866 6667666544 333322 3356655433344443 3455443 2212113455899999
Q ss_pred eCCCCCCCcch-----hhhhcchHHHHHHHHhcCcCCcEEEEEeCc-HHHHH-HHHHHHHHcCCcceee
Q 019743 226 QCPNPDFNRPE-----HRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVML-RMKQQFLEYGKGKLVL 287 (336)
Q Consensus 226 ~~~dp~~~~~~-----~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~-~~~~~l~~~g~~~~~~ 287 (336)
+||-.-....+ ...+.+...|++.+.++|+++|.+++.... .+|.. .+.++....|+.....
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~ 150 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLVRK 150 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEEEE
Confidence 98765311111 123455689999999999999999995422 22222 3456666778876543
No 278
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=95.63 E-value=0.34 Score=44.10 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=35.0
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHH
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCR 187 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~ 187 (336)
+..+||==|||-|.++..+|++ +..+.|.|.|--|+-..+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~ 95 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASN 95 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHH
Confidence 3578999999999999999998 789999999999875543
No 279
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=95.44 E-value=0.0083 Score=54.22 Aligned_cols=95 Identities=17% Similarity=0.153 Sum_probs=62.3
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
+..++|+|||.|..+.. +|.+.++|.|++...+..|++. +. .....+|+... .-+++++|.....
T Consensus 46 gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~----~~--~~~~~ad~l~~-----p~~~~s~d~~lsi 110 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRS----GG--DNVCRADALKL-----PFREESFDAALSI 110 (293)
T ss_pred cceeeecccCCcccCcC----CCcceeeecchhhhhccccccC----CC--ceeehhhhhcC-----CCCCCccccchhh
Confidence 56899999999976542 4888999999999988877531 21 15667777653 1134445532111
Q ss_pred CCCCCCCcchhh-hhcchHHHHHHHHhcCcCCcEEEE
Q 019743 227 CPNPDFNRPEHR-WRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 227 ~~dp~~~~~~~~-~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
...||- .+.-....+++..+.|+|||...+
T Consensus 111 ------avihhlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 111 ------AVIHHLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred ------hhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 011221 122345899999999999998776
No 280
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=95.38 E-value=0.048 Score=49.18 Aligned_cols=135 Identities=17% Similarity=0.076 Sum_probs=72.1
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc----------------------------E
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN----------------------------G 198 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n----------------------------v 198 (336)
+.++||||||.-.+-..-|..+ -.+++..|.++.-++..++.++..+.-+ |
T Consensus 57 g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 57 GETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 4689999999966543333332 3469999999999988877764332100 1
Q ss_pred -EEEecchhHH--HHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe---------Cc
Q 019743 199 -YFIATNATST--FRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS---------DI 266 (336)
Q Consensus 199 -~~~~~d~~~~--~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~---------~~ 266 (336)
.++.+|..+. ++..+.- |..+|.+...|.-. .-...+..|++.++++.++|||||.|++.. +.
T Consensus 136 k~Vv~cDV~~~~pl~~~~~~-p~~~D~v~s~fcLE----~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~ 210 (256)
T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVL-PPKFDCVISSFCLE----SACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGG 210 (256)
T ss_dssp EEEEE--TTSSSTTTTS-SS--SSEEEEEEESSHH----HH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETT
T ss_pred ceEEEeeccCCCCCCccccC-ccchhhhhhhHHHH----HHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECC
Confidence 1222333220 0000000 11244443332110 001122347899999999999999999822 10
Q ss_pred ------HHHHHHHHHHHHHcCCcceee
Q 019743 267 ------EEVMLRMKQQFLEYGKGKLVL 287 (336)
Q Consensus 267 ------~~~~~~~~~~l~~~g~~~~~~ 287 (336)
.--.+.+.+.+++.||.....
T Consensus 211 ~~F~~l~l~ee~v~~al~~aG~~i~~~ 237 (256)
T PF01234_consen 211 HKFPCLPLNEEFVREALEEAGFDIEDL 237 (256)
T ss_dssp EEEE---B-HHHHHHHHHHTTEEEEEE
T ss_pred EecccccCCHHHHHHHHHHcCCEEEec
Confidence 012557888899999976543
No 281
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=95.33 E-value=0.16 Score=46.33 Aligned_cols=120 Identities=18% Similarity=0.221 Sum_probs=88.9
Q ss_pred CCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh--CC--CcEEEEecchhHHHHhhhcCCCCeE
Q 019743 145 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS--GI--TNGYFIATNATSTFRSIVASYPGKL 220 (336)
Q Consensus 145 ~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~--~~--~nv~~~~~d~~~~~d~ivsnpp~~~ 220 (336)
++..++|=||=|-|......++.-.--+++-+||+...++..++-.... |. +.|.++-+|...++... +...+
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~---~~~~~ 196 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDL---KENPF 196 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHh---ccCCc
Confidence 3456899999999999888877733457889999999999888776543 22 46999999988765543 23445
Q ss_pred EEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHH
Q 019743 221 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVML 271 (336)
Q Consensus 221 d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 271 (336)
|.+.....||.- +...++.+.+++.+.+.||++|.+....+..++..
T Consensus 197 dVii~dssdpvg----pa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~ 243 (337)
T KOG1562|consen 197 DVIITDSSDPVG----PACALFQKPYFGLVLDALKGDGVVCTQGECMWLHL 243 (337)
T ss_pred eEEEEecCCccc----hHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHH
Confidence 777777777742 33456788999999999999999999666544433
No 282
>PRK11524 putative methyltransferase; Provisional
Probab=95.19 E-value=0.071 Score=49.02 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=39.3
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHH
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQ 191 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~ 191 (336)
++..|||--||||..+++..+. +-+++|+|++++.++.|++++.
T Consensus 208 ~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 208 PGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHH
Confidence 4789999999999998887766 6789999999999999999875
No 283
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=95.08 E-value=0.041 Score=52.54 Aligned_cols=54 Identities=26% Similarity=0.375 Sum_probs=44.9
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFI 201 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~ 201 (336)
...+||||+|||.++...++.. .-.++++|.-..|.+.|++-..++|.+ ++.++
T Consensus 67 kv~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vI 121 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKNGMSDKINVI 121 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcCCCccceeee
Confidence 3569999999999999888887 445999999999999999998888864 45543
No 284
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.07 E-value=0.066 Score=46.80 Aligned_cols=58 Identities=17% Similarity=0.298 Sum_probs=43.3
Q ss_pred CcccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHH
Q 019743 115 GPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRD 188 (336)
Q Consensus 115 gpeT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~ 188 (336)
.+.-.++++..++... .++..|||-=||||..+++..+. +.+++|+|+++..++.|++
T Consensus 174 ~~kP~~l~~~lI~~~t--------------~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 174 TQKPVELIERLIKAST--------------NPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp T-S-HHHHHHHHHHHS---------------TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred ecCCHHHHHHHHHhhh--------------ccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 5667778888886543 14689999999999998887776 6789999999999999864
No 285
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.04 E-value=0.16 Score=45.03 Aligned_cols=101 Identities=15% Similarity=0.161 Sum_probs=67.8
Q ss_pred CCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH--HHHhhhcCCCCeEEEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS--TFRSIVASYPGKLILV 223 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~--~~d~ivsnpp~~~d~i 223 (336)
..+||=||++||......+.- .|+.-|+++|.|+..=......++ ..+|+.-+..|+.. .+...+ + .+|.|
T Consensus 157 GsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAk--kRtNiiPIiEDArhP~KYRmlV---g-mVDvI 230 (317)
T KOG1596|consen 157 GSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAK--KRTNIIPIIEDARHPAKYRMLV---G-MVDVI 230 (317)
T ss_pred CceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhh--ccCCceeeeccCCCchheeeee---e-eEEEE
Confidence 678999999999988887766 589999999999765443332222 24788888888854 233333 1 45555
Q ss_pred EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743 224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 263 (336)
Q Consensus 224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~ 263 (336)
+...+.|. ..+-+.-++...||+||.+.+.
T Consensus 231 FaDvaqpd----------q~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 231 FADVAQPD----------QARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred eccCCCch----------hhhhhhhhhhhhhccCCeEEEE
Confidence 54433332 1234555778899999999883
No 286
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.03 E-value=0.22 Score=42.72 Aligned_cols=138 Identities=13% Similarity=0.015 Sum_probs=74.6
Q ss_pred ccccccccCCCCCCeEEEEeccccHHHHHHHHh-CCCCeEEEEecChH----HHHHHHHHH--HHhCCCcEEEEecchhH
Q 019743 135 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGK----LVTHCRDSL--QLSGITNGYFIATNATS 207 (336)
Q Consensus 135 ~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~-~p~~~v~giDis~~----~l~~a~~n~--~~~~~~nv~~~~~d~~~ 207 (336)
++.+.|.. .+..|+|+=.|+|.++.-++.. .|...|++.=-.+. .....+.+. ++....|++.+-.+...
T Consensus 40 ~L~FaGlk---pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A 116 (238)
T COG4798 40 VLAFAGLK---PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVA 116 (238)
T ss_pred eeEEeccC---CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccc
Confidence 55666654 3679999999999999999887 47778887643322 111111111 11223444444333322
Q ss_pred HHHhhhcCCCCeEEEEEee--CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH--------------HHH
Q 019743 208 TFRSIVASYPGKLILVSIQ--CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE--------------VML 271 (336)
Q Consensus 208 ~~d~ivsnpp~~~d~i~~~--~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------~~~ 271 (336)
. . ||..++.+... +-+-+.+.-|. -...++..++++.|||||.+.++..... -..
T Consensus 117 ~----~--~pq~~d~~~~~~~yhdmh~k~i~~---~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a 187 (238)
T COG4798 117 L----G--APQKLDLVPTAQNYHDMHNKNIHP---ATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPA 187 (238)
T ss_pred c----C--CCCcccccccchhhhhhhccccCc---chHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChH
Confidence 1 1 33334433221 11111111111 2346788899999999999988431100 122
Q ss_pred HHHHHHHHcCCcc
Q 019743 272 RMKQQFLEYGKGK 284 (336)
Q Consensus 272 ~~~~~l~~~g~~~ 284 (336)
.+.+..++.||..
T Consensus 188 ~V~a~veaaGFkl 200 (238)
T COG4798 188 VVIAEVEAAGFKL 200 (238)
T ss_pred HHHHHHHhhccee
Confidence 4566667788864
No 287
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=94.64 E-value=0.14 Score=49.78 Aligned_cols=130 Identities=6% Similarity=0.039 Sum_probs=81.8
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhh-cCCCC-eEEEEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIV-ASYPG-KLILVS 224 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~iv-snpp~-~~d~i~ 224 (336)
...+|=+|-|+|.+...+-...|...++++++.|.|++.|..+.....-.+.++.-.|....+.... +++.. .+|.+.
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~ 375 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLM 375 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEE
Confidence 4578899999999999988889999999999999999999998754332233344445444322222 22322 245443
Q ss_pred e--eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE--EeCcHHHHHHHHHHH
Q 019743 225 I--QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL--QSDIEEVMLRMKQQF 277 (336)
Q Consensus 225 ~--~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~--~~~~~~~~~~~~~~l 277 (336)
+ ..+|++ ...-+....+...++..+...|.|.|.+.+ .+.+..+...+..-|
T Consensus 376 ~dvds~d~~-g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l 431 (482)
T KOG2352|consen 376 VDVDSKDSH-GMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNL 431 (482)
T ss_pred EECCCCCcc-cCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhh
Confidence 3 333321 111122234567899999999999999988 333334444444433
No 288
>PRK13699 putative methylase; Provisional
Probab=94.55 E-value=0.16 Score=45.07 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=40.0
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS 193 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~ 193 (336)
++..|||-=||||..+++..+. +.+++|+|+++...+.|.++++..
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHH
Confidence 3678999999999998887766 678999999999999999887653
No 289
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.55 E-value=0.057 Score=52.43 Aligned_cols=101 Identities=14% Similarity=0.177 Sum_probs=78.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCC-eEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCC--CeEEE
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDL-NFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYP--GKLIL 222 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~-~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp--~~~d~ 222 (336)
..+|||.=|+||.-++..|++.|+. .+++-|.++.+++..++|++.++.++ +...+.|+... .+.++. ..||.
T Consensus 110 ~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~l---M~~~~~~~~~FDv 186 (525)
T KOG1253|consen 110 SLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVL---MYEHPMVAKFFDV 186 (525)
T ss_pred cchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHH---HHhccccccccce
Confidence 5689999999999999999998875 69999999999999999999887665 66777887653 233332 34565
Q ss_pred EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
|.+ ||+- .-..|++.+.+.+..||.+.+
T Consensus 187 IDL---DPyG---------s~s~FLDsAvqav~~gGLL~v 214 (525)
T KOG1253|consen 187 IDL---DPYG---------SPSPFLDSAVQAVRDGGLLCV 214 (525)
T ss_pred Eec---CCCC---------CccHHHHHHHHHhhcCCEEEE
Confidence 544 3431 113899999999999999999
No 290
>PRK11524 putative methyltransferase; Provisional
Probab=94.44 E-value=0.1 Score=48.04 Aligned_cols=82 Identities=12% Similarity=0.001 Sum_probs=46.0
Q ss_pred cEEEEecchhHH--------HHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH
Q 019743 197 NGYFIATNATST--------FRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE 268 (336)
Q Consensus 197 nv~~~~~d~~~~--------~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~ 268 (336)
+-+++++|..+. +|+++++|||-...-+....+.+. ..........++.++.++|||||.+++.++...
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~---~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~~ 84 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWK---EDLFIDWLYEWIDECHRVLKKQGTMYIMNSTEN 84 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCccccccccccccccc---HHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchh
Confidence 346777887652 677777788743110101111110 001112246899999999999999999776543
Q ss_pred HHHHHHHHHHHcCCc
Q 019743 269 VMLRMKQQFLEYGKG 283 (336)
Q Consensus 269 ~~~~~~~~l~~~g~~ 283 (336)
... ...+...+|.
T Consensus 85 -~~~-~~~~~~~~f~ 97 (284)
T PRK11524 85 -MPF-IDLYCRKLFT 97 (284)
T ss_pred -hhH-HHHHHhcCcc
Confidence 223 3334455654
No 291
>PHA01634 hypothetical protein
Probab=94.17 E-value=0.13 Score=41.08 Aligned_cols=49 Identities=16% Similarity=0.070 Sum_probs=42.6
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI 195 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~ 195 (336)
.+.+|+|||.+-|..++..+.+. ...|+++|.++...+..++|++.+.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHHHHHhhhhee
Confidence 35789999999999999998775 56799999999999999999876643
No 292
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.01 E-value=0.56 Score=42.91 Aligned_cols=127 Identities=13% Similarity=0.092 Sum_probs=72.3
Q ss_pred eEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCC
Q 019743 149 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 228 (336)
Q Consensus 149 ~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~ 228 (336)
+++|+.||.|.+...+.+.. -..+.++|+++.+++..+.|... . ++++|+.+.-..-+ ...+|.++..+|
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~~~-----~-~~~~Di~~~~~~~~---~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANFPN-----K-LIEGDITKIDEKDF---IPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhCCC-----C-CccCccccCchhhc---CCCCCEEEeCCC
Confidence 58999999999988887764 33578999999999998877531 1 45566654311000 123565555443
Q ss_pred CCCCCcchh------hhhcchHHHHHHHHhcCcCCcEEEEEe-------CcHHHHHHHHHHHHHcCCcceee
Q 019743 229 NPDFNRPEH------RWRMVQRSLVEAVSDLLVHDGKVFLQS-------DIEEVMLRMKQQFLEYGKGKLVL 287 (336)
Q Consensus 229 dp~~~~~~~------~~~l~~~~~l~~~~~~LkpgG~l~~~~-------~~~~~~~~~~~~l~~~g~~~~~~ 287 (336)
-..+..... .+......+++.+. .++|. .+++|. +.......+.+.|++.||.....
T Consensus 72 Cq~fS~ag~~~~~~d~r~~L~~~~~~~i~-~~~P~-~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~ 141 (275)
T cd00315 72 CQPFSIAGKRKGFEDTRGTLFFEIIRILK-EKKPK-YFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWK 141 (275)
T ss_pred ChhhhHHhhcCCCCCchHHHHHHHHHHHH-hcCCC-EEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEE
Confidence 322221111 11112234444433 44665 455533 11234667888888889876443
No 293
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=93.89 E-value=0.16 Score=50.63 Aligned_cols=115 Identities=19% Similarity=0.263 Sum_probs=70.5
Q ss_pred CeEEEEeccccHHHHHHHHhC----CCCeEEEEecChHHHHHHHHHHHHhCCC--cEEEEecchhH--------HHHhhh
Q 019743 148 PLVVDIGSGNGLFLLGMARKR----KDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATS--------TFRSIV 213 (336)
Q Consensus 148 ~~vLDiGcGsG~~~~~la~~~----p~~~v~giDis~~~l~~a~~n~~~~~~~--nv~~~~~d~~~--------~~d~iv 213 (336)
..+.|..||||.+.+...+.. ....++|-+..+.+...|..|...++.. .....++|.+. .||.++
T Consensus 219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~v~ 298 (501)
T TIGR00497 219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEVVV 298 (501)
T ss_pred CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCEEe
Confidence 479999999999988755432 2356999999999999999997666542 23333333321 378889
Q ss_pred cCCCCeEEEEEeeC----CCCCCCcch--hhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 214 ASYPGKLILVSIQC----PNPDFNRPE--HRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 214 snpp~~~d~i~~~~----~dp~~~~~~--~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
+|||+....-.-.. .+++....| +...-.-..++..+...|++||+..+
T Consensus 299 ~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~ai 353 (501)
T TIGR00497 299 SNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAI 353 (501)
T ss_pred ecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEE
Confidence 99998632100000 011100001 00001135788888999999998665
No 294
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=93.82 E-value=0.38 Score=43.25 Aligned_cols=125 Identities=14% Similarity=0.134 Sum_probs=68.2
Q ss_pred CCeEEEEeccccHHHHHHHH---h--CCCCeEEEEecC--------------------------hHHHHHHHHHHHHhCC
Q 019743 147 QPLVVDIGSGNGLFLLGMAR---K--RKDLNFLGLEVN--------------------------GKLVTHCRDSLQLSGI 195 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~---~--~p~~~v~giDis--------------------------~~~l~~a~~n~~~~~~ 195 (336)
...|+|.||=.|..++.++. . .++.++++.|-= ...++..++|+.+.++
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 45799999988876665433 2 256779998821 1134445555555554
Q ss_pred --CcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc--HHHHH
Q 019743 196 --TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI--EEVML 271 (336)
Q Consensus 196 --~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~ 271 (336)
.+++++.+...+.+. .+|+..+..+.+.. |-+ .-....++.++..|.|||.+++ .|+ .....
T Consensus 155 ~~~~v~~vkG~F~dTLp---~~p~~~IAll~lD~-DlY---------esT~~aLe~lyprl~~GGiIi~-DDY~~~gcr~ 220 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLP---DAPIERIALLHLDC-DLY---------ESTKDALEFLYPRLSPGGIIIF-DDYGHPGCRK 220 (248)
T ss_dssp SSTTEEEEES-HHHHCC---C-TT--EEEEEE----SH---------HHHHHHHHHHGGGEEEEEEEEE-SSTTTHHHHH
T ss_pred CcccEEEECCcchhhhc---cCCCccEEEEEEec-cch---------HHHHHHHHHHHhhcCCCeEEEE-eCCCChHHHH
Confidence 579999998876533 23444444444431 110 0124788899999999999998 332 22344
Q ss_pred HHHHHHHHcCCcce
Q 019743 272 RMKQQFLEYGKGKL 285 (336)
Q Consensus 272 ~~~~~l~~~g~~~~ 285 (336)
.+.+.+.++|....
T Consensus 221 AvdeF~~~~gi~~~ 234 (248)
T PF05711_consen 221 AVDEFRAEHGITDP 234 (248)
T ss_dssp HHHHHHHHTT--S-
T ss_pred HHHHHHHHcCCCCc
Confidence 56667777776544
No 295
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=93.54 E-value=0.92 Score=40.71 Aligned_cols=107 Identities=17% Similarity=0.170 Sum_probs=61.9
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC-----CC-cEEEEecchhHH--HHhhhcCCCC
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG-----IT-NGYFIATNATST--FRSIVASYPG 218 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~-----~~-nv~~~~~d~~~~--~d~ivsnpp~ 218 (336)
...|||+|+|+|.-++..|... ..++...|+. ..+.....|...++ .. ++.....+|... .+...+||
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~-~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~-- 162 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLL-GAEVVLTDLP-KVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNP-- 162 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHh-cceeccCCch-hhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCc--
Confidence 4579999999998888777754 6788888864 33333333332222 21 354544455442 23333322
Q ss_pred eEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc
Q 019743 219 KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 266 (336)
Q Consensus 219 ~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~ 266 (336)
+|.+.. .|++.... ..+.++..++..|..+|.+++.+.-
T Consensus 163 -~Dlila--sDvvy~~~------~~e~Lv~tla~ll~~~~~i~l~~~l 201 (248)
T KOG2793|consen 163 -FDLILA--SDVVYEEE------SFEGLVKTLAFLLAKDGTIFLAYPL 201 (248)
T ss_pred -ccEEEE--eeeeecCC------cchhHHHHHHHHHhcCCeEEEEEec
Confidence 343322 22221111 3357888888899999988887653
No 296
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=93.42 E-value=0.57 Score=44.14 Aligned_cols=119 Identities=15% Similarity=0.084 Sum_probs=74.0
Q ss_pred CCCeEEEEeccccHHHHHHHHhC-C---CCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhh---cC--C
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKR-K---DLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIV---AS--Y 216 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~-p---~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~iv---sn--p 216 (336)
++.+|||+|.-.|.=++.|.+.. + ...+++=|.++..+.............++.+...|+... +.+. +| .
T Consensus 155 p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~-p~~~~~~~~~~~ 233 (375)
T KOG2198|consen 155 PGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLF-PNIYLKDGNDKE 233 (375)
T ss_pred CCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceec-cccccccCchhh
Confidence 46799999999999887776653 2 237999999999988887776554445555555554321 2211 11 2
Q ss_pred CCeEEEEEeeCC---CCCCCc------c-hhhhh-----cchHHHHHHHHhcCcCCcEEEEEeC
Q 019743 217 PGKLILVSIQCP---NPDFNR------P-EHRWR-----MVQRSLVEAVSDLLVHDGKVFLQSD 265 (336)
Q Consensus 217 p~~~d~i~~~~~---dp~~~~------~-~~~~~-----l~~~~~l~~~~~~LkpgG~l~~~~~ 265 (336)
.+.+|.|.+..| |.+..+ . ....+ .++-.++....+.||+||+++-.|-
T Consensus 234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTC 297 (375)
T KOG2198|consen 234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTC 297 (375)
T ss_pred hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 234666654322 111111 0 00111 2346889999999999999998763
No 297
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=93.28 E-value=0.38 Score=46.07 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=17.6
Q ss_pred hHHHHHHHHhcCcCCcEEEEEe
Q 019743 243 QRSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 243 ~~~~l~~~~~~LkpgG~l~~~~ 264 (336)
...|++.=++-|.|||++++..
T Consensus 216 ~~~FL~~Ra~ELvpGG~mvl~~ 237 (386)
T PLN02668 216 LAGFLRARAQEMKRGGAMFLVC 237 (386)
T ss_pred HHHHHHHHHHHhccCcEEEEEE
Confidence 3567777788899999999954
No 298
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=93.09 E-value=1.4 Score=39.45 Aligned_cols=113 Identities=10% Similarity=0.076 Sum_probs=66.9
Q ss_pred CCeEEEEeccccHHHHHHHH----hCCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCCCeEE
Q 019743 147 QPLVVDIGSGNGLFLLGMAR----KRKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYPGKLI 221 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~----~~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp~~~d 221 (336)
.-..+|+|+|+-.=+..|.. +..-.+++.+|+|...++...+.+..... -.+.-+.+|....+. .+|..-.
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La----~~~~~~~ 154 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALA----ELPRGGR 154 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHh----cccCCCe
Confidence 45789999998765555444 33347899999999988766555543321 125556777654322 2343323
Q ss_pred EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcH
Q 019743 222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIE 267 (336)
Q Consensus 222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~ 267 (336)
.++.. +-...-...+. -...|+.++...|.||-.+.+-.|..
T Consensus 155 Rl~~f-lGStlGN~tp~---e~~~Fl~~l~~a~~pGd~~LlGvDl~ 196 (321)
T COG4301 155 RLFVF-LGSTLGNLTPG---ECAVFLTQLRGALRPGDYFLLGVDLR 196 (321)
T ss_pred EEEEE-ecccccCCChH---HHHHHHHHHHhcCCCcceEEEecccc
Confidence 33221 11110000010 12479999999999999999966543
No 299
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=93.08 E-value=0.67 Score=44.36 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=36.4
Q ss_pred CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEecChHHHHHHHHH
Q 019743 147 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDS 189 (336)
Q Consensus 147 ~~~vLDiGcGs-G~~~~~la~~~p~~~v~giDis~~~l~~a~~n 189 (336)
+.+||.+|||+ |.+++.+|+.....+++++|.+++.++.+++.
T Consensus 185 g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 185 GDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 56899999998 99999999987544699999999998888754
No 300
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=92.93 E-value=0.076 Score=50.64 Aligned_cols=61 Identities=18% Similarity=0.265 Sum_probs=53.6
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC--cEEEEecchhHHH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTF 209 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~--nv~~~~~d~~~~~ 209 (336)
+..|.|+.||-|-+++.+++. +++|++-|.++++++..+.|+..+.+. ++..+..|+..++
T Consensus 250 gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 250 GEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred cchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 578999999999999999988 599999999999999999999887764 4888888886643
No 301
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=92.71 E-value=0.4 Score=45.05 Aligned_cols=87 Identities=15% Similarity=0.222 Sum_probs=55.8
Q ss_pred CCeEEEEec-cccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEe---cchhHHHHhhhcCCCCeEEE
Q 019743 147 QPLVVDIGS-GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA---TNATSTFRSIVASYPGKLIL 222 (336)
Q Consensus 147 ~~~vLDiGc-GsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~---~d~~~~~d~ivsnpp~~~d~ 222 (336)
+.+|+=+|+ |.|.+++.+|+.. .++|+++|+|++-++.|++ .|.+. ++. .|..+.... .+|.
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~----lGAd~--~i~~~~~~~~~~~~~-------~~d~ 232 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKK----LGADH--VINSSDSDALEAVKE-------IADA 232 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHH----hCCcE--EEEcCCchhhHHhHh-------hCcE
Confidence 456655555 5788999999976 4999999999999888864 34332 222 222222111 1344
Q ss_pred EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
+....+ + .-+....+.|++||++.+
T Consensus 233 ii~tv~-~--------------~~~~~~l~~l~~~G~~v~ 257 (339)
T COG1064 233 IIDTVG-P--------------ATLEPSLKALRRGGTLVL 257 (339)
T ss_pred EEECCC-h--------------hhHHHHHHHHhcCCEEEE
Confidence 333322 2 456777788999999888
No 302
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=92.61 E-value=0.61 Score=36.88 Aligned_cols=88 Identities=11% Similarity=0.147 Sum_probs=56.7
Q ss_pred cccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEE-ecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCc
Q 019743 156 GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFI-ATNATSTFRSIVASYPGKLILVSIQCPNPDFNR 234 (336)
Q Consensus 156 GsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~-~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~ 234 (336)
|.|.+++.+|+... .+++++|.++..++.+++ .|.+.+... ..|+.+.+..+. +...+|.++-...
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~----~Ga~~~~~~~~~~~~~~i~~~~--~~~~~d~vid~~g------ 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE----LGADHVIDYSDDDFVEQIRELT--GGRGVDVVIDCVG------ 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH----TTESEEEETTTSSHHHHHHHHT--TTSSEEEEEESSS------
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh----hccccccccccccccccccccc--ccccceEEEEecC------
Confidence 56889999999985 999999999998888754 453332211 122333333333 2234555433211
Q ss_pred chhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743 235 PEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 235 ~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~ 264 (336)
....++.+.+.|+++|++.+..
T Consensus 68 --------~~~~~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 68 --------SGDTLQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp --------SHHHHHHHHHHEEEEEEEEEES
T ss_pred --------cHHHHHHHHHHhccCCEEEEEE
Confidence 1377888899999999999843
No 303
>PRK13699 putative methylase; Provisional
Probab=92.41 E-value=0.74 Score=40.85 Aligned_cols=42 Identities=10% Similarity=0.066 Sum_probs=31.5
Q ss_pred hHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcce
Q 019743 243 QRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 285 (336)
Q Consensus 243 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~ 285 (336)
...++.+++++|||||.+++-+++.. ...+...+.+.||...
T Consensus 51 ~~~~l~E~~RVLKpgg~l~if~~~~~-~~~~~~al~~~GF~l~ 92 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVSFYGWNR-VDRFMAAWKNAGFSVV 92 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEEEecccc-HHHHHHHHHHCCCEEe
Confidence 46888999999999999988666533 3445667788888643
No 304
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=92.39 E-value=2.1 Score=39.49 Aligned_cols=127 Identities=19% Similarity=0.153 Sum_probs=76.5
Q ss_pred eEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCC
Q 019743 149 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 228 (336)
Q Consensus 149 ~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~ 228 (336)
+++|+-||.|.+.+.+.+.. --.+.++|+++.+.+.-+.|.. ....+|+.+.-..-+ |+ .+|.+...+|
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l--~~-~~D~l~ggpP 70 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDL--PK-DVDLLIGGPP 70 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHH--HH-T-SEEEEE--
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhccc-------ccccccccccccccc--cc-cceEEEeccC
Confidence 58999999999999998775 2358899999999998888763 677888876422223 33 3676666655
Q ss_pred CCCCCcch-hh----hh-cchHHHHHHHHhcCcCCcEEEEEe-------CcHHHHHHHHHHHHHcCCcceeee
Q 019743 229 NPDFNRPE-HR----WR-MVQRSLVEAVSDLLVHDGKVFLQS-------DIEEVMLRMKQQFLEYGKGKLVLV 288 (336)
Q Consensus 229 dp~~~~~~-~~----~~-l~~~~~l~~~~~~LkpgG~l~~~~-------~~~~~~~~~~~~l~~~g~~~~~~~ 288 (336)
-..+.... .. .| ..+..+++.+ +.++|. .+++|- ........+.+.|.+.||......
T Consensus 71 CQ~fS~ag~~~~~~d~r~~L~~~~~~~v-~~~~Pk-~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~~v 141 (335)
T PF00145_consen 71 CQGFSIAGKRKGFDDPRNSLFFEFLRIV-KELKPK-YFLLENVPGLLSSKNGEVFKEILEELEELGYNVQWRV 141 (335)
T ss_dssp -TTTSTTSTHHCCCCHTTSHHHHHHHHH-HHHS-S-EEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEEEE
T ss_pred CceEeccccccccccccchhhHHHHHHH-hhccce-EEEecccceeeccccccccccccccccccceeehhcc
Confidence 43333222 11 11 1234555544 346774 455543 112346788888999998765443
No 305
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.30 E-value=2.6 Score=32.60 Aligned_cols=106 Identities=16% Similarity=0.146 Sum_probs=61.7
Q ss_pred ccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCC
Q 019743 155 SGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDF 232 (336)
Q Consensus 155 cGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~ 232 (336)
||.|.++..+++.. .+..++.+|.+++.++.+++ .+ +.++.+|..+. +.+-.-.-...+.+.+..++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~~---~~~i~gd~~~~-~~l~~a~i~~a~~vv~~~~~d~- 74 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----EG---VEVIYGDATDP-EVLERAGIEKADAVVILTDDDE- 74 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TT---SEEEES-TTSH-HHHHHTTGGCESEEEEESSSHH-
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----cc---cccccccchhh-hHHhhcCccccCEEEEccCCHH-
Confidence 77788888887753 23489999999998777643 23 67889998753 1111101223455555544321
Q ss_pred CcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCc
Q 019743 233 NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKG 283 (336)
Q Consensus 233 ~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~ 283 (336)
.-..+....+-+.|...++.......+. +.|...|..
T Consensus 75 ----------~n~~~~~~~r~~~~~~~ii~~~~~~~~~----~~l~~~g~d 111 (116)
T PF02254_consen 75 ----------ENLLIALLARELNPDIRIIARVNDPENA----ELLRQAGAD 111 (116)
T ss_dssp ----------HHHHHHHHHHHHTTTSEEEEEESSHHHH----HHHHHTT-S
T ss_pred ----------HHHHHHHHHHHHCCCCeEEEEECCHHHH----HHHHHCCcC
Confidence 1123344456677888999988765543 344555544
No 306
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=92.20 E-value=3.4 Score=36.18 Aligned_cols=61 Identities=16% Similarity=0.274 Sum_probs=45.8
Q ss_pred CCeEEEEecccc----HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhH
Q 019743 147 QPLVVDIGSGNG----LFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG----~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~ 207 (336)
...+++.+|+.| .++++.|.+..+.++++|-.++..+...++.+...++.+ ++|+.++..+
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e 107 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPE 107 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHH
Confidence 567999977654 344555666778999999999888888888877777655 6999988543
No 307
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=91.71 E-value=0.33 Score=42.45 Aligned_cols=111 Identities=11% Similarity=0.163 Sum_probs=67.2
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhh-cCCCCeEEEEE-
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIV-ASYPGKLILVS- 224 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~iv-snpp~~~d~i~- 224 (336)
..++|||||=|....+.- .+-..|+.||+++. . -.+.+.|.++. -+ .++...+|.|.
T Consensus 52 ~lrlLEVGals~~N~~s~---~~~fdvt~IDLns~----------~-----~~I~qqDFm~r---plp~~~~e~FdvIs~ 110 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACST---SGWFDVTRIDLNSQ----------H-----PGILQQDFMER---PLPKNESEKFDVISL 110 (219)
T ss_pred cceEEeecccCCCCcccc---cCceeeEEeecCCC----------C-----CCceeeccccC---CCCCCcccceeEEEE
Confidence 368999999766554443 44567999999862 1 12345555432 01 11223344432
Q ss_pred ---ee-CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcE-----EEEEeC-----cHHH--HHHHHHHHHHcCCcceeee
Q 019743 225 ---IQ-CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGK-----VFLQSD-----IEEV--MLRMKQQFLEYGKGKLVLV 288 (336)
Q Consensus 225 ---~~-~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~-----l~~~~~-----~~~~--~~~~~~~l~~~g~~~~~~~ 288 (336)
++ .|+|. -.-+.+..+.+.|+|+|. +++... +..| .+.+.++|...||..+...
T Consensus 111 SLVLNfVP~p~----------~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 111 SLVLNFVPDPK----------QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYK 180 (219)
T ss_pred EEEEeeCCCHH----------HHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEE
Confidence 33 35552 123788999999999999 887442 1122 3467788999999876543
No 308
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=91.43 E-value=0.54 Score=46.04 Aligned_cols=119 Identities=13% Similarity=0.122 Sum_probs=71.8
Q ss_pred CeEEEEeccccHHHHHHHHhCCCC--eEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 148 PLVVDIGSGNGLFLLGMARKRKDL--NFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 148 ~~vLDiGcGsG~~~~~la~~~p~~--~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
..|+|+.+|.|.|+.+|... |-. +|+-+ ..++.+...- ..|+ .=+..|+-+. ||.-|..+|.++.
T Consensus 367 RNVMDMnAg~GGFAAAL~~~-~VWVMNVVP~-~~~ntL~vIy----dRGL---IG~yhDWCE~----fsTYPRTYDLlHA 433 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD-PVWVMNVVPV-SGPNTLPVIY----DRGL---IGVYHDWCEA----FSTYPRTYDLLHA 433 (506)
T ss_pred eeeeeecccccHHHHHhccC-CceEEEeccc-CCCCcchhhh----hccc---chhccchhhc----cCCCCcchhheeh
Confidence 46999999999999999754 211 22222 1222222221 1222 1233456553 2334555665554
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcce
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKL 285 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~ 285 (336)
...- .....+.....++-++-|.|+|+|.+++.- ..+....++.++.+..|...
T Consensus 434 ~~lf-----s~~~~rC~~~~illEmDRILRP~G~~iiRD-~~~vl~~v~~i~~~lrW~~~ 487 (506)
T PF03141_consen 434 DGLF-----SLYKDRCEMEDILLEMDRILRPGGWVIIRD-TVDVLEKVKKIAKSLRWEVR 487 (506)
T ss_pred hhhh-----hhhcccccHHHHHHHhHhhcCCCceEEEec-cHHHHHHHHHHHHhCcceEE
Confidence 3110 011223445789999999999999999954 45778899999999888754
No 309
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.70 E-value=0.96 Score=41.99 Aligned_cols=95 Identities=13% Similarity=0.067 Sum_probs=62.5
Q ss_pred CCCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecch--hH---HHHhhh--cCCC
Q 019743 146 AQPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNA--TS---TFRSIV--ASYP 217 (336)
Q Consensus 146 ~~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~--~~---~~d~iv--snpp 217 (336)
.+.++|=+|+| .|..+...|+..-..+|+.+|+++..++.|++ .|.+.+....... .. ..+..+ .+|+
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d 244 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK----FGATVTDPSSHKSSPQELAELVEKALGKKQPD 244 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hCCeEEeeccccccHHHHHHHHHhhccccCCC
Confidence 36789999999 68888888999888899999999999999986 3554433332211 11 122222 1234
Q ss_pred CeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 218 GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 218 ~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
+.++.-- ...-++.+...+++||.+.+
T Consensus 245 ~~~dCsG------------------~~~~~~aai~a~r~gGt~vl 271 (354)
T KOG0024|consen 245 VTFDCSG------------------AEVTIRAAIKATRSGGTVVL 271 (354)
T ss_pred eEEEccC------------------chHHHHHHHHHhccCCEEEE
Confidence 4443211 12556667788999999766
No 310
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=90.50 E-value=1.8 Score=40.73 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=14.7
Q ss_pred CCeEEEEeccccHHHHHHHH
Q 019743 147 QPLVVDIGSGNGLFLLGMAR 166 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~ 166 (336)
.-+|+|+||.+|..++.+..
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~ 36 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVS 36 (334)
T ss_dssp EEEEEEES--SSHHHHHHHH
T ss_pred ceEEEecCCCCCccHHHHHH
Confidence 45899999999998887654
No 311
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=89.88 E-value=0.83 Score=44.57 Aligned_cols=102 Identities=10% Similarity=0.086 Sum_probs=67.8
Q ss_pred eEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe---
Q 019743 149 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI--- 225 (336)
Q Consensus 149 ~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~--- 225 (336)
+++-+|||.=.+...+-+.. ...++-+|+|+-+++.....-. ....-..+...|+... .+ ++.+++.+..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l---~f--edESFdiVIdkGt 123 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQL---VF--EDESFDIVIDKGT 123 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhc---cC--CCcceeEEEecCc
Confidence 79999999999888876653 4569999999999988765432 2223477888887653 22 4555554321
Q ss_pred ---eCCC---CCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743 226 ---QCPN---PDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 226 ---~~~d---p~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~ 264 (336)
.+.+ +|.. ......+.++.++|++||+....+
T Consensus 124 lDal~~de~a~~~~-------~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 124 LDALFEDEDALLNT-------AHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred cccccCCchhhhhh-------HHhhHHHhhHHHHhccCCEEEEEE
Confidence 1111 1111 123467889999999999976644
No 312
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=89.01 E-value=2.7 Score=39.80 Aligned_cols=96 Identities=14% Similarity=0.127 Sum_probs=61.2
Q ss_pred CeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEec-chhHHHHhhhcCCCCeEEEEEe
Q 019743 148 PLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 148 ~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~-d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
.+|+=+||| -|.+++.+|+.....+++++|+++..++.|++.. +.+.+..... +.......+ .+. .-+|.++-
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~---g~~~~~~~~~~~~~~~~~~~-t~g-~g~D~vie 244 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG---GADVVVNPSEDDAGAEILEL-TGG-RGADVVIE 244 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC---CCeEeecCccccHHHHHHHH-hCC-CCCCEEEE
Confidence 379999999 5888888999988899999999999999997632 2221212112 221111111 111 12444332
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
... ....+.++.+.++|+|.+.+
T Consensus 245 ~~G--------------~~~~~~~ai~~~r~gG~v~~ 267 (350)
T COG1063 245 AVG--------------SPPALDQALEALRPGGTVVV 267 (350)
T ss_pred CCC--------------CHHHHHHHHHHhcCCCEEEE
Confidence 211 12577888899999999998
No 313
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=87.70 E-value=0.49 Score=42.61 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=35.4
Q ss_pred CeEEEEeccccHHHHHHHHhC----C----CCeEEEEecChHHHHHHHHHHHH
Q 019743 148 PLVVDIGSGNGLFLLGMARKR----K----DLNFLGLEVNGKLVTHCRDSLQL 192 (336)
Q Consensus 148 ~~vLDiGcGsG~~~~~la~~~----p----~~~v~giDis~~~l~~a~~n~~~ 192 (336)
..|+|+|.|+|.++..+++.. | ..+++-||+|+.+.+.-++++..
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 689999999999998887642 2 36899999999998888777654
No 314
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=87.45 E-value=6.5 Score=36.46 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=30.1
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHC 186 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a 186 (336)
..+||==|||.|.++..||...+. +-|=|.|--|+-..
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~--~qGNEfSy~Mli~S 188 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFK--CQGNEFSYFMLICS 188 (369)
T ss_pred CceEEecCCCchhHHHHHHHhccc--ccccHHHHHHHHHH
Confidence 568999999999999999999654 44558887776443
No 315
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=87.01 E-value=2 Score=42.51 Aligned_cols=96 Identities=10% Similarity=0.210 Sum_probs=65.5
Q ss_pred CeEEEEeccccHHHHHHHH---h-CCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhHHHHhhhcCCC-CeEE
Q 019743 148 PLVVDIGSGNGLFLLGMAR---K-RKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATSTFRSIVASYP-GKLI 221 (336)
Q Consensus 148 ~~vLDiGcGsG~~~~~la~---~-~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~~~d~ivsnpp-~~~d 221 (336)
.+|+=+|.|-|-+.-...+ . ....+++++|.+|.|+-..+. ...... .+|+++.+|+... ||| +..|
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w------~ap~eq~D 441 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKW------NAPREQAD 441 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEecccccc------CCchhhcc
Confidence 4688999999987655433 2 346789999999999987755 222333 4599999998653 144 4444
Q ss_pred EEE----eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEE
Q 019743 222 LVS----IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKV 260 (336)
Q Consensus 222 ~i~----~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l 260 (336)
.++ -.|.|- ...++.+.-+.+.|||+|..
T Consensus 442 I~VSELLGSFGDN----------ELSPECLDG~q~fLkpdgIs 474 (649)
T KOG0822|consen 442 IIVSELLGSFGDN----------ELSPECLDGAQKFLKPDGIS 474 (649)
T ss_pred chHHHhhccccCc----------cCCHHHHHHHHhhcCCCceE
Confidence 332 123333 25678999999999999754
No 316
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=86.33 E-value=1.9 Score=38.33 Aligned_cols=74 Identities=19% Similarity=0.154 Sum_probs=45.1
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHH---HHHHHhCC------CcEEEEecchhHHHHhhhcCCC
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCR---DSLQLSGI------TNGYFIATNATSTFRSIVASYP 217 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~---~n~~~~~~------~nv~~~~~d~~~~~d~ivsnpp 217 (336)
.+.|||.=+|-|.=++.+|.. +++|+++|.||-.....+ +++....- .+++++++|..+.+. .++
T Consensus 76 ~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~----~~~ 149 (234)
T PF04445_consen 76 RPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR----QPD 149 (234)
T ss_dssp ---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC----CHS
T ss_pred CCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh----hcC
Confidence 468999999999999999876 689999999987655444 34333221 369999999887644 246
Q ss_pred CeEEEEEee
Q 019743 218 GKLILVSIQ 226 (336)
Q Consensus 218 ~~~d~i~~~ 226 (336)
.++|.|++.
T Consensus 150 ~s~DVVY~D 158 (234)
T PF04445_consen 150 NSFDVVYFD 158 (234)
T ss_dssp S--SEEEE-
T ss_pred CCCCEEEEC
Confidence 677877763
No 317
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=85.99 E-value=1.3 Score=42.05 Aligned_cols=41 Identities=24% Similarity=0.328 Sum_probs=34.6
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRD 188 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~ 188 (336)
-+.++|+|.|-|.++..++-.+ +..|.|||-|....+.|++
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence 4679999999999999998877 7899999999766666643
No 318
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=85.77 E-value=7.8 Score=35.69 Aligned_cols=95 Identities=12% Similarity=0.183 Sum_probs=56.8
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEec-chhHHHHhhhcCCCCeEEEEE
Q 019743 147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT-NATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~-d~~~~~d~ivsnpp~~~d~i~ 224 (336)
+.+||..|+| .|..++.+|+.. +.++++++.+++..+.+++ .+.+.+...+. +....+ ... +...+|.+
T Consensus 166 ~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~-~~~--~~~~~D~v- 236 (338)
T cd08254 166 GETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKK-AAG--LGGGFDVI- 236 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHH-HHh--cCCCceEE-
Confidence 4577778876 478888888876 5789999999988777643 34432221111 111111 111 22334543
Q ss_pred eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743 225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 263 (336)
Q Consensus 225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~ 263 (336)
+.+.. ....++++.+.|+++|+++..
T Consensus 237 id~~g-------------~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 237 FDFVG-------------TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred EECCC-------------CHHHHHHHHHHhhcCCEEEEE
Confidence 22211 125677888999999998863
No 319
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=85.69 E-value=2.2 Score=37.77 Aligned_cols=101 Identities=14% Similarity=0.111 Sum_probs=62.0
Q ss_pred CeEEEEeccccHHHHHHHHhC----C-C----CeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH--HHh---hh
Q 019743 148 PLVVDIGSGNGLFLLGMARKR----K-D----LNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST--FRS---IV 213 (336)
Q Consensus 148 ~~vLDiGcGsG~~~~~la~~~----p-~----~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~--~d~---iv 213 (336)
.+++|+|...|.++..|+++. | . ..+++||+.+-+ .++.|.-+++|+... ... .|
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCceEEeecccCCHhHHHHHHHHh
Confidence 579999999999999998862 1 1 139999986532 456788899998641 222 34
Q ss_pred cCCCCeEEEEEee-CCCCCCCcchhhh----hcchHHHHHHHHhcCcCCcEEEEE
Q 019743 214 ASYPGKLILVSIQ-CPNPDFNRPEHRW----RMVQRSLVEAVSDLLVHDGKVFLQ 263 (336)
Q Consensus 214 snpp~~~d~i~~~-~~dp~~~~~~~~~----~l~~~~~l~~~~~~LkpgG~l~~~ 263 (336)
.|.+. |.+... -||.. --|.-+ ..+.-..+.....+|+|||.|+-.
T Consensus 112 ggekA--dlVvcDGAPDvT--GlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 112 GGEKA--DLVVCDGAPDVT--GLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred CCCCc--cEEEeCCCCCcc--ccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 44443 322221 23321 122111 112235566778899999998873
No 320
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=85.48 E-value=2.4 Score=34.76 Aligned_cols=42 Identities=17% Similarity=0.152 Sum_probs=28.2
Q ss_pred EEecccc--HHHHHHH--HhCCCCeEEEEecChHHHHHHHHH--HHHh
Q 019743 152 DIGSGNG--LFLLGMA--RKRKDLNFLGLEVNGKLVTHCRDS--LQLS 193 (336)
Q Consensus 152 DiGcGsG--~~~~~la--~~~p~~~v~giDis~~~l~~a~~n--~~~~ 193 (336)
|||+..| .....++ ...|..+++++|.++..++..++| +..+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 8999999 5555443 457899999999999999999999 5554
No 321
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=85.07 E-value=3.3 Score=33.04 Aligned_cols=76 Identities=9% Similarity=0.028 Sum_probs=48.8
Q ss_pred cEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHH
Q 019743 197 NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQ 276 (336)
Q Consensus 197 nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 276 (336)
++++..+|+.+.+..+ +..+|.++..--.|. .. ..+-...+++.+++.++|||.+.--+ .+..+++.
T Consensus 32 ~L~L~~gDa~~~l~~l----~~~~Da~ylDgFsP~---~n--PelWs~e~~~~l~~~~~~~~~l~Tys----~a~~Vr~~ 98 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQL----DARFDAWYLDGFSPA---KN--PELWSEELFKKLARLSKPGGTLATYS----SAGAVRRA 98 (124)
T ss_dssp EEEEEES-HHHHHHHB-----T-EEEEEE-SS-TT---TS--GGGSSHHHHHHHHHHEEEEEEEEES------BHHHHHH
T ss_pred EEEEEEcHHHHHHHhC----cccCCEEEecCCCCc---CC--cccCCHHHHHHHHHHhCCCcEEEEee----chHHHHHH
Confidence 3677889987765443 356777766421111 11 12456799999999999999887633 24568899
Q ss_pred HHHcCCcce
Q 019743 277 FLEYGKGKL 285 (336)
Q Consensus 277 l~~~g~~~~ 285 (336)
|.+.||...
T Consensus 99 L~~aGF~v~ 107 (124)
T PF05430_consen 99 LQQAGFEVE 107 (124)
T ss_dssp HHHCTEEEE
T ss_pred HHHcCCEEE
Confidence 999999854
No 322
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=83.10 E-value=11 Score=35.33 Aligned_cols=126 Identities=16% Similarity=0.169 Sum_probs=72.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
..+++|+-||.|.+.+.+.... ---+.++|+++.+++.-+.|.. ...+++.|..+....-+ +.+.+|.+.-.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~~-----~~~~~~~di~~~~~~~~--~~~~~DvligG 74 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANFP-----HGDIILGDIKELDGEAL--RKSDVDVLIGG 74 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhCC-----CCceeechHhhcChhhc--cccCCCEEEeC
Confidence 4689999999999998887765 2347799999999998877653 24456667654322111 12234544444
Q ss_pred CCCCCCCcch-------hhhhcchHHHHHHHHhcCcCCcEEEEEeC------cHHHHHHHHHHHHHcCCc
Q 019743 227 CPNPDFNRPE-------HRWRMVQRSLVEAVSDLLVHDGKVFLQSD------IEEVMLRMKQQFLEYGKG 283 (336)
Q Consensus 227 ~~dp~~~~~~-------~~~~l~~~~~l~~~~~~LkpgG~l~~~~~------~~~~~~~~~~~l~~~g~~ 283 (336)
+|-..+.... .+..|+ -.+++ +...++| -.+++|-- .....+.+.+.|++.||.
T Consensus 75 pPCQ~FS~aG~r~~~~D~R~~L~-~~~~r-~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 75 PPCQDFSIAGKRRGYDDPRGSLF-LEFIR-LIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEELGYG 141 (328)
T ss_pred CCCcchhhcCcccCCcCccceee-HHHHH-HHHhhCC-CEEEEecCchHHhcCchHHHHHHHHHHHcCCc
Confidence 4332222111 112222 23333 3345677 45555321 112456788889999986
No 323
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=83.06 E-value=1.2 Score=34.47 Aligned_cols=65 Identities=12% Similarity=0.110 Sum_probs=37.2
Q ss_pred HHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHH-----HHHHHHHHHHc
Q 019743 209 FRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEV-----MLRMKQQFLEY 280 (336)
Q Consensus 209 ~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~-----~~~~~~~l~~~ 280 (336)
||.++.||||.-..-.. .... ......-.|..|++...+.| +|.+.+.+..... +..+++.+.+.
T Consensus 3 FD~VIGNPPY~~~~~~~---~~~~--~~~~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~l~~~ 72 (106)
T PF07669_consen 3 FDVVIGNPPYIKIKSLS---KKKK--KKKKKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKFLLNN 72 (106)
T ss_pred cCEEEECCCChhhcccc---chhh--cccccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHHHhcC
Confidence 78899999996321100 0000 00012245678899998888 9999776654332 34555555443
No 324
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=82.39 E-value=15 Score=36.73 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=35.1
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHH
Q 019743 147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRD 188 (336)
Q Consensus 147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~ 188 (336)
+.+|+=+||| -|..++..|+.. +++|+++|.+++.++.+++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH
Confidence 6789999999 577888888877 5689999999999988864
No 325
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=82.05 E-value=2.1 Score=38.83 Aligned_cols=60 Identities=10% Similarity=0.134 Sum_probs=40.9
Q ss_pred CCeEEEEeccccHHHHHHHHhC-----CCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR-----KDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~-----p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~ 207 (336)
...++|+|||.|.++..+++.. +...++.||...... .+-........ ..++=+..|+.+
T Consensus 19 ~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~d 84 (259)
T PF05206_consen 19 DSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKD 84 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeec
Confidence 5689999999999999999987 567999999865433 22233322221 235556667655
No 326
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=81.91 E-value=14 Score=37.89 Aligned_cols=95 Identities=18% Similarity=0.144 Sum_probs=54.8
Q ss_pred ccccHHHHHHHHh--CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCC
Q 019743 155 SGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDF 232 (336)
Q Consensus 155 cGsG~~~~~la~~--~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~ 232 (336)
||.|.++..+++. ..+..++.+|.+++.++.+++ .| ...+.+|+.+. +..-.-.-...+.+.+..+|+.
T Consensus 406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g---~~v~~GDat~~-~~L~~agi~~A~~vv~~~~d~~- 476 (601)
T PRK03659 406 VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----YG---YKVYYGDATQL-ELLRAAGAEKAEAIVITCNEPE- 476 (601)
T ss_pred ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CC---CeEEEeeCCCH-HHHHhcCCccCCEEEEEeCCHH-
Confidence 6777788777764 246789999999999887753 23 56788998653 1111000112334444444432
Q ss_pred CcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH
Q 019743 233 NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE 268 (336)
Q Consensus 233 ~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~ 268 (336)
....+. ...+.+.|...++....+..
T Consensus 477 ---------~n~~i~-~~~r~~~p~~~IiaRa~~~~ 502 (601)
T PRK03659 477 ---------DTMKIV-ELCQQHFPHLHILARARGRV 502 (601)
T ss_pred ---------HHHHHH-HHHHHHCCCCeEEEEeCCHH
Confidence 112333 33445678888887665433
No 327
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=81.65 E-value=9.4 Score=36.64 Aligned_cols=122 Identities=19% Similarity=0.223 Sum_probs=65.1
Q ss_pred CeEEEEeccccHHHHHHHHh--CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhc-------CCCC
Q 019743 148 PLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVA-------SYPG 218 (336)
Q Consensus 148 ~~vLDiGcGsG~~~~~la~~--~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivs-------npp~ 218 (336)
.+|-=+| -|.+++.+|-. ..+.+|+|+||++..++... .|. .....-+....+...++ +-+.
T Consensus 10 ~~I~ViG--LGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln-----~G~--~~i~e~~~~~~v~~~v~~g~lraTtd~~ 80 (436)
T COG0677 10 ATIGVIG--LGYVGLPLAAAFASAGFKVIGVDINQKKVDKLN-----RGE--SYIEEPDLDEVVKEAVESGKLRATTDPE 80 (436)
T ss_pred eEEEEEc--cccccHHHHHHHHHcCCceEeEeCCHHHHHHHh-----CCc--ceeecCcHHHHHHHHHhcCCceEecChh
Confidence 3444444 45555555544 34689999999999888652 232 23333333321111111 0111
Q ss_pred ---eEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc-HHHHHHHHHHHHH
Q 019743 219 ---KLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQFLE 279 (336)
Q Consensus 219 ---~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~~l~~ 279 (336)
..|.+.+..|.|..+.. .-+........+.+...|++|-.+++|+-. ..--+++..-+.+
T Consensus 81 ~l~~~dv~iI~VPTPl~~~~-~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle 144 (436)
T COG0677 81 ELKECDVFIICVPTPLKKYR-EPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLE 144 (436)
T ss_pred hcccCCEEEEEecCCcCCCC-CCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHh
Confidence 22444455666653321 112233467888999999999999997632 2234444444433
No 328
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=81.63 E-value=15 Score=31.75 Aligned_cols=117 Identities=17% Similarity=0.274 Sum_probs=71.6
Q ss_pred cccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHh----CCCCeEEEEecChHHHHHHHHHHH
Q 019743 116 PRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARK----RKDLNFLGLEVNGKLVTHCRDSLQ 191 (336)
Q Consensus 116 peT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~----~p~~~v~giDis~~~l~~a~~n~~ 191 (336)
|...-.|.+.+-..+ ...|+|+|+-.|..++..|.. ....+|+++||+-..++-+...
T Consensus 55 p~D~~~yQellw~~~----------------P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-- 116 (237)
T COG3510 55 PSDMWNYQELLWELQ----------------PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-- 116 (237)
T ss_pred HHHHHHHHHHHHhcC----------------CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc--
Confidence 556666776664422 568999999999888887764 2457899999997766555332
Q ss_pred HhCCCcEEEEecchhH-----HHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743 192 LSGITNGYFIATNATS-----TFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 192 ~~~~~nv~~~~~d~~~-----~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~ 264 (336)
.+++.|++++..+ ..+..-+-+|-.+. +.-.|.. +.+- -+-++....+|..|-++.++.
T Consensus 117 ---~p~i~f~egss~dpai~eqi~~~~~~y~kIfv---ilDsdHs-----~~hv---LAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 117 ---VPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV---ILDSDHS-----MEHV---LAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred ---CCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE---EecCCch-----HHHH---HHHHHHhhhHhhcCceEEEec
Confidence 5689999998753 23333222332221 2211211 1111 144566677888888888853
No 329
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=80.33 E-value=4.3 Score=38.37 Aligned_cols=47 Identities=21% Similarity=0.381 Sum_probs=37.6
Q ss_pred CCeEEEEeccccHHHHHHHHh----CC----CCeEEEEecChHHHHHHHHHHHHh
Q 019743 147 QPLVVDIGSGNGLFLLGMARK----RK----DLNFLGLEVNGKLVTHCRDSLQLS 193 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~----~p----~~~v~giDis~~~l~~a~~n~~~~ 193 (336)
.-.++|||.|+|.++..+++. .| .+++.-||+|++..+.=+++++..
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 457999999999999887654 34 688999999999887777766543
No 330
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=79.33 E-value=21 Score=32.01 Aligned_cols=120 Identities=13% Similarity=0.145 Sum_probs=66.5
Q ss_pred EEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEE-EEEeeCCC
Q 019743 151 VDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLI-LVSIQCPN 229 (336)
Q Consensus 151 LDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d-~i~~~~~d 229 (336)
+..=.||=.++..+.+. +-+.+.+|+.+.-.+..++|+.. ..++++.+.|.++.+...+ ||..-. .|.+ |
T Consensus 62 l~~YPGSP~ia~~llR~--qDrl~l~ELHp~d~~~L~~~~~~--~~~v~v~~~DG~~~l~all--PP~~rRglVLI---D 132 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE--QDRLVLFELHPQDFEALKKNFRR--DRRVRVHHRDGYEGLKALL--PPPERRGLVLI---D 132 (245)
T ss_dssp --EEE-HHHHHHHHS-T--TSEEEEE--SHHHHHHHTTS--T--TS-EEEE-S-HHHHHHHH---S-TTS-EEEEE----
T ss_pred cCcCCCCHHHHHHhCCc--cceEEEEecCchHHHHHHHHhcc--CCccEEEeCchhhhhhhhC--CCCCCCeEEEE---C
Confidence 66778888888887655 67899999999999988887753 3579999999988655666 454322 2233 3
Q ss_pred CCCCcchhhhhcchHHHHHHHHhcCc--CCcEEEEE--eCcHHHHHHHHHHHHHcCCcc
Q 019743 230 PDFNRPEHRWRMVQRSLVEAVSDLLV--HDGKVFLQ--SDIEEVMLRMKQQFLEYGKGK 284 (336)
Q Consensus 230 p~~~~~~~~~~l~~~~~l~~~~~~Lk--pgG~l~~~--~~~~~~~~~~~~~l~~~g~~~ 284 (336)
|.+... ..|.++.+.+...+| +.|.+.+- .-.....+.+.+.+.+.+...
T Consensus 133 PpYE~~-----~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l~~~~~~~ 186 (245)
T PF04378_consen 133 PPYEQK-----DDYQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRALKALGIKK 186 (245)
T ss_dssp ----ST-----THHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHHH-SSE
T ss_pred CCCCCc-----hHHHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHHHhcCCCC
Confidence 421111 234566666666665 78887772 223344566777777766543
No 331
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=77.76 E-value=0.83 Score=41.88 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=51.1
Q ss_pred CCeEEEEeccccHHHH-HHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC-cEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743 147 QPLVVDIGSGNGLFLL-GMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT-NGYFIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~-~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~-nv~~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
+..|+|+=.|-|.+++ .+.+. ....|+|+|.+|.+++..+++++.++.. ....+.+|-. .+-|....|.+.
T Consensus 195 ~eviVDLYAGIGYFTlpflV~a-gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R------~~~~~~~AdrVn 267 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTA-GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNR------NPKPRLRADRVN 267 (351)
T ss_pred cchhhhhhcccceEEeehhhcc-CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccc------ccCccccchhee
Confidence 4689999999999999 55544 3678999999999999999999887543 2333334322 122444556665
Q ss_pred ee
Q 019743 225 IQ 226 (336)
Q Consensus 225 ~~ 226 (336)
+.
T Consensus 268 LG 269 (351)
T KOG1227|consen 268 LG 269 (351)
T ss_pred ec
Confidence 53
No 332
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=76.94 E-value=15 Score=33.08 Aligned_cols=130 Identities=14% Similarity=0.096 Sum_probs=74.4
Q ss_pred CCeEEEEeccccHHHHHHHHhCC------------CCeEEEEecChHHHHHHHHHH------------------------
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRK------------DLNFLGLEVNGKLVTHCRDSL------------------------ 190 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p------------~~~v~giDis~~~l~~a~~n~------------------------ 190 (336)
...|+|+|.|+|.-.+.+-+.++ ...+++++.+|..-..+....
T Consensus 59 ~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~ 138 (252)
T COG4121 59 ILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCA 138 (252)
T ss_pred ceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhH
Confidence 46799999999987666554432 245788887754332222110
Q ss_pred --HHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHH
Q 019743 191 --QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEE 268 (336)
Q Consensus 191 --~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~ 268 (336)
...+..++.++.+|+......+-.+-+ .+|..+ .|.....+.+ .+-...++..+++..+|||.+.- ..
T Consensus 139 r~~~~g~~~l~l~~gd~~~~~p~~~~~~~-~~dAwf---lDgFsP~kNP--~mW~~e~l~~~a~~~~~~~~l~t----~s 208 (252)
T COG4121 139 AAVRHGLLLLGLVIGDAGDGIPPVPRRRP-GTDAWF---LDGFRPVKNP--EMWEDELLNLMARIPYRDPTLAT----FA 208 (252)
T ss_pred HhhhcchheeeeeeeehhhcCCccccccc-CccEEe---cCCccccCCh--hhccHHHHHHHHhhcCCCCceec----hH
Confidence 111223455566666543221111001 234333 3322111222 23457999999999999999773 23
Q ss_pred HHHHHHHHHHHcCCccee
Q 019743 269 VMLRMKQQFLEYGKGKLV 286 (336)
Q Consensus 269 ~~~~~~~~l~~~g~~~~~ 286 (336)
.+-.+++-+++.||....
T Consensus 209 sA~~vRr~L~~aGF~v~~ 226 (252)
T COG4121 209 AAIAVRRRLEQAGFTVEK 226 (252)
T ss_pred HHHHHHHHHHHcCceeee
Confidence 467888999999998643
No 333
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=76.46 E-value=24 Score=36.22 Aligned_cols=52 Identities=21% Similarity=0.187 Sum_probs=34.9
Q ss_pred CeEEEEeccccHHHHHHHHh--CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH
Q 019743 148 PLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST 208 (336)
Q Consensus 148 ~~vLDiGcGsG~~~~~la~~--~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~ 208 (336)
..|+=+|| |.++..+++. ..+..++.+|.+++.++.+++ .| ...+.+|+.+.
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g---~~v~~GDat~~ 454 (621)
T PRK03562 401 PRVIIAGF--GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK----FG---MKVFYGDATRM 454 (621)
T ss_pred CcEEEEec--ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----cC---CeEEEEeCCCH
Confidence 34555555 4555555553 235789999999999888754 23 56788998763
No 334
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=76.30 E-value=0.57 Score=40.77 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=27.6
Q ss_pred hHHHHHHHHhcCcCCcEEEEEeCcHHHHH-HHHHHHHHcC-Ccc
Q 019743 243 QRSLVEAVSDLLVHDGKVFLQSDIEEVML-RMKQQFLEYG-KGK 284 (336)
Q Consensus 243 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~~~~l~~~g-~~~ 284 (336)
...++.++.++|||||.+++.++...... ....+++..| |..
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~~~~~g~~~~ 78 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDDREIAGFLFELALEIFGGFFL 78 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHHHHHHTT-EE
T ss_pred HHHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHHHHHhhhhhe
Confidence 47889999999999999999776644332 3333444445 544
No 335
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=76.00 E-value=22 Score=31.20 Aligned_cols=95 Identities=14% Similarity=0.194 Sum_probs=55.2
Q ss_pred CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcE-EEEecchhHHHHhhhcCCCCeEEEEE
Q 019743 147 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 147 ~~~vLDiGcGs-G~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv-~~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
+.+||-.|+|+ |..++.+++.. +.++++++.+++..+.+++ .+...+ .....+....+. ......+|.++
T Consensus 135 ~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~---~~~~~~~d~vi 206 (271)
T cd05188 135 GDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKE----LGADHVIDYKEEDLEEELR---LTGGGGADVVI 206 (271)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----hCCceeccCCcCCHHHHHH---HhcCCCCCEEE
Confidence 56899999986 77777778776 5899999999887776643 232221 111111111111 11223345443
Q ss_pred eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743 225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 263 (336)
Q Consensus 225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~ 263 (336)
..... ...+..+.+.|+++|.+...
T Consensus 207 ~~~~~--------------~~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 207 DAVGG--------------PETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred ECCCC--------------HHHHHHHHHhcccCCEEEEE
Confidence 22111 14566777889999998873
No 336
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=75.72 E-value=17 Score=33.94 Aligned_cols=94 Identities=12% Similarity=0.141 Sum_probs=52.8
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
+.+||=+||| .|..++.+|+..-..+++++|.+++.++.|++ .|.+.+ +..+-.+ +..+... ...+|.++-
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~~v--i~~~~~~-~~~~~~~-~g~~D~vid 241 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGADKL--VNPQNDD-LDHYKAE-KGYFDVSFE 241 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCcEE--ecCCccc-HHHHhcc-CCCCCEEEE
Confidence 4566667875 56677778887633379999999998887753 454322 1111011 1111111 111343321
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
... ....++.+.+.|++||++.+
T Consensus 242 ~~G--------------~~~~~~~~~~~l~~~G~iv~ 264 (343)
T PRK09880 242 VSG--------------HPSSINTCLEVTRAKGVMVQ 264 (343)
T ss_pred CCC--------------CHHHHHHHHHHhhcCCEEEE
Confidence 111 02456777889999999887
No 337
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=75.20 E-value=27 Score=32.64 Aligned_cols=41 Identities=17% Similarity=0.404 Sum_probs=32.2
Q ss_pred CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEecChHHHHHHHH
Q 019743 147 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRD 188 (336)
Q Consensus 147 ~~~vLDiGcGs-G~~~~~la~~~p~~~v~giDis~~~l~~a~~ 188 (336)
+.+||=+|+|+ |..++.+|+.. +.+++++|.+++.++.+++
T Consensus 167 g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH
Confidence 56788889864 77777888876 5689999999998877743
No 338
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=75.11 E-value=8.5 Score=36.31 Aligned_cols=39 Identities=26% Similarity=0.315 Sum_probs=28.4
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCC-eEEEEecChHHHHH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDL-NFLGLEVNGKLVTH 185 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~-~v~giDis~~~l~~ 185 (336)
..++||+|.|.|.-+.++-..+|+. .++-++.|+..-++
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV 153 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKV 153 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHH
Confidence 4569999999998887777778875 36666777654433
No 339
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.82 E-value=16 Score=34.20 Aligned_cols=93 Identities=17% Similarity=0.147 Sum_probs=54.1
Q ss_pred CCeEEEEec-cccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcE-EEE-ecchhHHHHhhhcCCCCeEEEE
Q 019743 147 QPLVVDIGS-GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNG-YFI-ATNATSTFRSIVASYPGKLILV 223 (336)
Q Consensus 147 ~~~vLDiGc-GsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv-~~~-~~d~~~~~d~ivsnpp~~~d~i 223 (336)
+.++-=+|. |-|.+++.+|+.. ..+|++||-+..--+.|-+ ..|.+.. .+. ..|+.+. +..--++.++.+
T Consensus 182 G~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~~kkeea~~---~LGAd~fv~~~~d~d~~~~---~~~~~dg~~~~v 254 (360)
T KOG0023|consen 182 GKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSSKKKEEAIK---SLGADVFVDSTEDPDIMKA---IMKTTDGGIDTV 254 (360)
T ss_pred CcEEEEecCcccchHHHHHHHHh-CcEEEEEeCCchhHHHHHH---hcCcceeEEecCCHHHHHH---HHHhhcCcceee
Confidence 344444454 4899999999998 8999999999754444433 4565542 222 2333321 111113434433
Q ss_pred EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
. ++. +.-++.+..+||++|.+.+
T Consensus 255 ~-~~a---------------~~~~~~~~~~lk~~Gt~V~ 277 (360)
T KOG0023|consen 255 S-NLA---------------EHALEPLLGLLKVNGTLVL 277 (360)
T ss_pred e-ecc---------------ccchHHHHHHhhcCCEEEE
Confidence 2 111 1334666789999999988
No 340
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=74.75 E-value=2.3 Score=38.70 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=30.4
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVT 184 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~ 184 (336)
..+|||+|||+|.-++...... ...+...|.|.+.++
T Consensus 117 ~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 117 GKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLR 153 (282)
T ss_pred CceeEecCCcccccchhhhhhc-cceeeeEecchhhee
Confidence 5789999999999988887664 378888998887773
No 341
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=73.93 E-value=37 Score=34.30 Aligned_cols=105 Identities=13% Similarity=0.094 Sum_probs=60.4
Q ss_pred ccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHH--HHhhhcCCCCeEEEEEeeCCCC
Q 019743 155 SGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST--FRSIVASYPGKLILVSIQCPNP 230 (336)
Q Consensus 155 cGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~--~d~ivsnpp~~~d~i~~~~~dp 230 (336)
||.|.++..+++.. .+..++.+|.+++.++.+++ . +...+++|+.+. ++.. .-...+.+.+..+|.
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~---g~~~i~GD~~~~~~L~~a---~i~~a~~viv~~~~~ 492 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----R---GIRAVLGNAANEEIMQLA---HLDCARWLLLTIPNG 492 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----C---CCeEEEcCCCCHHHHHhc---CccccCEEEEEcCCh
Confidence 67777888887763 35789999999998877753 2 367889998753 2110 112234344444443
Q ss_pred CCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcc
Q 019743 231 DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 284 (336)
Q Consensus 231 ~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~ 284 (336)
. ....+... .+.+.|.-.++....+.+. .+.+++.|-..
T Consensus 493 ~----------~~~~iv~~-~~~~~~~~~iiar~~~~~~----~~~l~~~Gad~ 531 (558)
T PRK10669 493 Y----------EAGEIVAS-AREKRPDIEIIARAHYDDE----VAYITERGANQ 531 (558)
T ss_pred H----------HHHHHHHH-HHHHCCCCeEEEEECCHHH----HHHHHHcCCCE
Confidence 2 11123333 3455788888877654332 22345566553
No 342
>PRK07102 short chain dehydrogenase; Provisional
Probab=72.24 E-value=15 Score=32.17 Aligned_cols=58 Identities=12% Similarity=0.052 Sum_probs=39.4
Q ss_pred eEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 149 LVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 149 ~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+++=.|+ +|.++..++++. .+.+|++++.+++..+...++....+..++.++++|+.+
T Consensus 3 ~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 62 (243)
T PRK07102 3 KILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILD 62 (243)
T ss_pred EEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 4666674 556666666552 367899999998877655555544444578899998864
No 343
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=71.13 E-value=40 Score=31.62 Aligned_cols=95 Identities=16% Similarity=0.124 Sum_probs=53.5
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCC-eEEEEecChHHHHHHHHHHHHhCCCcE-EEEecchhHHHHhhhcCCCCeEEEE
Q 019743 147 QPLVVDIGSG-NGLFLLGMARKRKDL-NFLGLEVNGKLVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLILV 223 (336)
Q Consensus 147 ~~~vLDiGcG-sG~~~~~la~~~p~~-~v~giDis~~~l~~a~~n~~~~~~~nv-~~~~~d~~~~~d~ivsnpp~~~d~i 223 (336)
+.+||=.||| .|..++.+|+.. +. +++++|.++...+.+++ .|.+.+ .....+..+.+.... +...+|.+
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~--~~~g~d~v 249 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALT--GGFGADVV 249 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHh--CCCCCCEE
Confidence 4567767875 466677788876 45 59999999998887743 454321 111123322221111 12224433
Q ss_pred EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
+ ...- ....+..+.+.|+++|++.+
T Consensus 250 i-d~~g-------------~~~~~~~~~~~~~~~G~iv~ 274 (358)
T TIGR03451 250 I-DAVG-------------RPETYKQAFYARDLAGTVVL 274 (358)
T ss_pred E-ECCC-------------CHHHHHHHHHHhccCCEEEE
Confidence 2 2111 02455667788999999886
No 344
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=70.63 E-value=44 Score=31.54 Aligned_cols=94 Identities=18% Similarity=0.182 Sum_probs=52.0
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCC-eEEEEecChHHHHHHHHHHHHhCCCcE-EEEecchhHHHHhhhcCCCCeEEEE
Q 019743 147 QPLVVDIGSG-NGLFLLGMARKRKDL-NFLGLEVNGKLVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLILV 223 (336)
Q Consensus 147 ~~~vLDiGcG-sG~~~~~la~~~p~~-~v~giDis~~~l~~a~~n~~~~~~~nv-~~~~~d~~~~~d~ivsnpp~~~d~i 223 (336)
+.+||=.|+| .|.+++.+|+.. ++ +++++|.+++.++.+++ .|.+.+ .....|+.+.+.... +..+|.+
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~---~~g~d~v 263 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAA-GASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELT---GGGVDYA 263 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHh---CCCCCEE
Confidence 3455557875 456667777776 55 69999999998887753 354321 111112222222111 1123433
Q ss_pred EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
+ .... ....+..+.+.|+++|++.+
T Consensus 264 i-d~~G-------------~~~~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 264 F-EMAG-------------SVPALETAYEITRRGGTTVT 288 (371)
T ss_pred E-ECCC-------------ChHHHHHHHHHHhcCCEEEE
Confidence 2 2110 12456777789999999887
No 345
>PTZ00357 methyltransferase; Provisional
Probab=70.14 E-value=9.8 Score=39.15 Aligned_cols=102 Identities=16% Similarity=0.093 Sum_probs=59.8
Q ss_pred CeEEEEeccccHHHHHHHHh----CCCCeEEEEecChHHHHHHHHHHH-HhCCCc--------EEEEecchhHHH-Hh--
Q 019743 148 PLVVDIGSGNGLFLLGMARK----RKDLNFLGLEVNGKLVTHCRDSLQ-LSGITN--------GYFIATNATSTF-RS-- 211 (336)
Q Consensus 148 ~~vLDiGcGsG~~~~~la~~----~p~~~v~giDis~~~l~~a~~n~~-~~~~~n--------v~~~~~d~~~~~-d~-- 211 (336)
..|+=+|+|-|-+.-...+. .-..++++||.++.++.....+.. ...+.+ |+++.+|+...- +.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 35899999999876444332 336789999999775555544432 223433 899999987630 00
Q ss_pred -hhcCCC--CeEEEEEe----eCCCCCCCcchhhhhcchHHHHHHHHhcCcC----CcE
Q 019743 212 -IVASYP--GKLILVSI----QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH----DGK 259 (336)
Q Consensus 212 -ivsnpp--~~~d~i~~----~~~dp~~~~~~~~~~l~~~~~l~~~~~~Lkp----gG~ 259 (336)
..+-|+ +.+|.++. .|.|- .+.++.|..+.+.||+ +|.
T Consensus 782 ~s~~~P~~~gKaDIVVSELLGSFGDN----------ELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSELLGSLGDN----------ELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhhhcccccc----------cCCHHHHHHHHHhhhhhcccccc
Confidence 000011 12343321 23332 2457888888888886 775
No 346
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=69.39 E-value=45 Score=30.96 Aligned_cols=41 Identities=7% Similarity=-0.091 Sum_probs=30.4
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHH
Q 019743 147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRD 188 (336)
Q Consensus 147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~ 188 (336)
+.+||=.|+| .|.+++.+|+.. ++++++++.+++.++.|++
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~ 207 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALA 207 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHH
Confidence 5677777865 556667778776 6789999999888776643
No 347
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=68.83 E-value=33 Score=32.08 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=29.1
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEec---ChHHHHHHH
Q 019743 147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEV---NGKLVTHCR 187 (336)
Q Consensus 147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDi---s~~~l~~a~ 187 (336)
+.+||=+|+| .|.+++.+|+.. ++++++++. ++..++.++
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~ 216 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVE 216 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHH
Confidence 4567777886 467778888876 568999987 566666654
No 348
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=68.68 E-value=45 Score=30.77 Aligned_cols=96 Identities=15% Similarity=0.121 Sum_probs=52.5
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcE-EEEecchhHHHHhhhcCCCCeEEEEE
Q 019743 147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv-~~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
+.+||-.|+| .|..++.+|+......+++++.++...+.+++ .+...+ .....++.+.+.... +...+|.++
T Consensus 168 ~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~--~~~~~d~vl 241 (347)
T cd05278 168 GSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELT--GGRGVDCVI 241 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHc--CCCCCcEEE
Confidence 4566667775 47788888888733478899888877766543 232211 111112222222211 223345332
Q ss_pred eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
..-.. ...+..+.+.|+++|++..
T Consensus 242 -d~~g~-------------~~~~~~~~~~l~~~G~~v~ 265 (347)
T cd05278 242 -EAVGF-------------EETFEQAVKVVRPGGTIAN 265 (347)
T ss_pred -EccCC-------------HHHHHHHHHHhhcCCEEEE
Confidence 21100 1466777788999998775
No 349
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=68.19 E-value=93 Score=28.10 Aligned_cols=118 Identities=15% Similarity=0.172 Sum_probs=78.0
Q ss_pred EEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCe-EEEEEeeCCC
Q 019743 151 VDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGK-LILVSIQCPN 229 (336)
Q Consensus 151 LDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~-~d~i~~~~~d 229 (336)
|..=|||=.++..+.+. +-++.++|+.++=....++|+. +-.++++.++|-+..+-..+ ||.. -..+.+ |
T Consensus 93 l~~YpGSP~lA~~llR~--qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~~~l~a~L--PP~erRglVLI---D 163 (279)
T COG2961 93 LRYYPGSPLLARQLLRE--QDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGFLALKAHL--PPKERRGLVLI---D 163 (279)
T ss_pred cccCCCCHHHHHHHcch--hceeeeeecCccHHHHHHHHhC--CCcceEEEecCcHHHHhhhC--CCCCcceEEEe---C
Confidence 78889998888887655 6789999999998888888876 45689999999877544444 5543 222333 4
Q ss_pred CCCCcchhhhhcchHHHHHHHHhcCc--CCcEEEEEe--CcHHHHHHHHHHHHHcCC
Q 019743 230 PDFNRPEHRWRMVQRSLVEAVSDLLV--HDGKVFLQS--DIEEVMLRMKQQFLEYGK 282 (336)
Q Consensus 230 p~~~~~~~~~~l~~~~~l~~~~~~Lk--pgG~l~~~~--~~~~~~~~~~~~l~~~g~ 282 (336)
|.+.... .|.++++.+.+.++ ++|...+-. -...+...+.+.+++.+.
T Consensus 164 PPfE~~~-----eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~L~~~~i 215 (279)
T COG2961 164 PPFELKD-----EYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRALEALGI 215 (279)
T ss_pred CCccccc-----HHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHHHhhcCc
Confidence 4332221 34555555555555 678776633 234455666777777775
No 350
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=67.79 E-value=73 Score=29.83 Aligned_cols=94 Identities=10% Similarity=0.123 Sum_probs=55.6
Q ss_pred CCeEEEEec--cccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEe-c-chhHHHHhhhcCCCCeEEE
Q 019743 147 QPLVVDIGS--GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA-T-NATSTFRSIVASYPGKLIL 222 (336)
Q Consensus 147 ~~~vLDiGc--GsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~-~-d~~~~~d~ivsnpp~~~d~ 222 (336)
+.+||=.|+ |.|.+++.+|+.. ++++++++.+++..+.+++ ..|.+.+--.. . ++.+.+.... +..+|.
T Consensus 159 g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~~---~~gvD~ 231 (348)
T PLN03154 159 GDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKN---KLGFDEAFNYKEEPDLDAALKRYF---PEGIDI 231 (348)
T ss_pred CCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH---hcCCCEEEECCCcccHHHHHHHHC---CCCcEE
Confidence 467777787 4788888899886 6789999998887666642 23544322111 1 3322222221 223454
Q ss_pred EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
++ ... -...+..+.+.|+++|++.+
T Consensus 232 v~-d~v--------------G~~~~~~~~~~l~~~G~iv~ 256 (348)
T PLN03154 232 YF-DNV--------------GGDMLDAALLNMKIHGRIAV 256 (348)
T ss_pred EE-ECC--------------CHHHHHHHHHHhccCCEEEE
Confidence 33 211 01456777788999999886
No 351
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=67.37 E-value=58 Score=31.65 Aligned_cols=53 Identities=13% Similarity=0.138 Sum_probs=37.1
Q ss_pred CeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 148 PLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 148 ~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
..++=+|+ |.++..+++.. .+..++.+|.+++.++.+++. ..++.++.+|+.+
T Consensus 232 ~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~-----~~~~~~i~gd~~~ 286 (453)
T PRK09496 232 KRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEE-----LPNTLVLHGDGTD 286 (453)
T ss_pred CEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH-----CCCCeEEECCCCC
Confidence 44555555 77777777653 357899999999988776543 1356788888865
No 352
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=67.37 E-value=1.7 Score=33.82 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=18.8
Q ss_pred HHHHHHHHhcCcCCcEEEEEe
Q 019743 244 RSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 244 ~~~l~~~~~~LkpgG~l~~~~ 264 (336)
..+++.+++.|+|||.+++|.
T Consensus 24 ~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 24 KRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp HHHHHHHHHHEEEEEEEEEE-
T ss_pred HHHHHHHHHhhCCCCEEEEeC
Confidence 589999999999999999976
No 353
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=66.34 E-value=12 Score=31.27 Aligned_cols=125 Identities=16% Similarity=0.184 Sum_probs=73.9
Q ss_pred cccHHHHHHhhhhcCCCCcccccccccCCCCCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCC
Q 019743 116 PRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI 195 (336)
Q Consensus 116 peT~~~~~~~i~~~~~~~~~i~~~g~~~~~~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~ 195 (336)
.+|.+.+.+.+.+... +..+|+=|||=|-...+.- ...+..+++..|++..-- ..+
T Consensus 9 ~~T~~~l~~~l~~~~~--------------~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~--------~~~- 64 (162)
T PF10237_consen 9 DETAEFLARELLDGAL--------------DDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFE--------QFG- 64 (162)
T ss_pred HHHHHHHHHHHHHhcC--------------CCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHH--------hcC-
Confidence 5677777766654321 2468999999886655544 345788899999986532 222
Q ss_pred CcEEEEecchhHH--HHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHH
Q 019743 196 TNGYFIATNATST--FRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRM 273 (336)
Q Consensus 196 ~nv~~~~~d~~~~--~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 273 (336)
++ .|+.-|.... ++.-+ ...+|.+++ ||.+-. .....+....+...+++++.+++.|+. .....+
T Consensus 65 ~~-~F~fyD~~~p~~~~~~l---~~~~d~vv~---DPPFl~-----~ec~~k~a~ti~~L~k~~~kii~~Tg~-~~~~~~ 131 (162)
T PF10237_consen 65 GD-EFVFYDYNEPEELPEEL---KGKFDVVVI---DPPFLS-----EECLTKTAETIRLLLKPGGKIILCTGE-EMEELI 131 (162)
T ss_pred Cc-ceEECCCCChhhhhhhc---CCCceEEEE---CCCCCC-----HHHHHHHHHHHHHHhCccceEEEecHH-HHHHHH
Confidence 23 4556565432 22111 234555544 343211 123456667777788999999998864 345566
Q ss_pred HHHH
Q 019743 274 KQQF 277 (336)
Q Consensus 274 ~~~l 277 (336)
.+++
T Consensus 132 ~~ll 135 (162)
T PF10237_consen 132 KKLL 135 (162)
T ss_pred HHHh
Confidence 6665
No 354
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=65.87 E-value=63 Score=29.12 Aligned_cols=95 Identities=14% Similarity=0.011 Sum_probs=51.5
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCe-EEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743 147 QPLVVDIGSG-NGLFLLGMARKRKDLN-FLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 147 ~~~vLDiGcG-sG~~~~~la~~~p~~~-v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
+.+||=+|+| .|.+++.+|+.. +.+ ++++|.+++.++.|++ .|.+.+.- ..+..+.+.... ....+|.++
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~-~~~~~~~~~~~~--~~~g~d~vi 192 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAA-GAARVVAADPSPDRRELALS----FGATALAE-PEVLAERQGGLQ--NGRGVDVAL 192 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----cCCcEecC-chhhHHHHHHHh--CCCCCCEEE
Confidence 4566667775 455666677776 454 9999999988877654 34432111 111111111111 111234332
Q ss_pred eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743 225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 263 (336)
Q Consensus 225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~ 263 (336)
-... ....++.+.+.|+++|++.+.
T Consensus 193 d~~G--------------~~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 193 EFSG--------------ATAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred ECCC--------------ChHHHHHHHHHhcCCCEEEEe
Confidence 1111 125667778899999999873
No 355
>PRK07326 short chain dehydrogenase; Provisional
Probab=65.34 E-value=24 Score=30.56 Aligned_cols=58 Identities=12% Similarity=0.055 Sum_probs=40.3
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+..+|=+| |+|.++..++++. .+.+|++++.++.......+..... .++.++.+|+.+
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~ 65 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--GNVLGLAADVRD 65 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCC
Confidence 35688788 4777777777653 3678999999987776665544322 457888888753
No 356
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=65.21 E-value=35 Score=30.13 Aligned_cols=73 Identities=14% Similarity=0.003 Sum_probs=48.8
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH------HHHhhhcCCCC
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS------TFRSIVASYPG 218 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~------~~d~ivsnpp~ 218 (336)
.+.||=.||.+|.|+-+||+++ .++.|++.-.+-+....... +.| +.....|..+ ....+..||.+
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~---~~g---l~~~kLDV~~~~~V~~v~~evr~~~~G 80 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAI---QFG---LKPYKLDVSKPEEVVTVSGEVRANPDG 80 (289)
T ss_pred CCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHH---hhC---CeeEEeccCChHHHHHHHHHHhhCCCC
Confidence 5689999999999999999974 57889998776543333222 233 3344444432 24556778888
Q ss_pred eEEEEEe
Q 019743 219 KLILVSI 225 (336)
Q Consensus 219 ~~d~i~~ 225 (336)
.+|..+-
T Consensus 81 kld~L~N 87 (289)
T KOG1209|consen 81 KLDLLYN 87 (289)
T ss_pred ceEEEEc
Confidence 8886653
No 357
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=64.24 E-value=28 Score=30.50 Aligned_cols=58 Identities=10% Similarity=0.059 Sum_probs=39.9
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecch
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNA 205 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~ 205 (336)
+.++|=.| |+|.++..+++.+ .+.+|++++.+++.++...+.+...+..++.++..|+
T Consensus 12 ~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~ 71 (247)
T PRK08945 12 DRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDL 71 (247)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecc
Confidence 45677788 4666777666543 3679999999988776666665554444567776665
No 358
>PRK07904 short chain dehydrogenase; Provisional
Probab=64.19 E-value=32 Score=30.59 Aligned_cols=60 Identities=8% Similarity=0.075 Sum_probs=41.5
Q ss_pred CCeEEEEeccccHHHHHHHHhC--C-CCeEEEEecChHH-HHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--K-DLNFLGLEVNGKL-VTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p-~~~v~giDis~~~-l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
..++|=.|++ |.++..+|+++ . +.+|+.++.+++. ++.+.+.+...+..+++++.+|+.+
T Consensus 8 ~~~vlItGas-~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~ 71 (253)
T PRK07904 8 PQTILLLGGT-SEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALD 71 (253)
T ss_pred CcEEEEEcCC-cHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCC
Confidence 4578888885 45777777652 2 4789999998774 6666555655554478899988753
No 359
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=64.10 E-value=30 Score=31.76 Aligned_cols=41 Identities=15% Similarity=0.048 Sum_probs=28.8
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHH
Q 019743 147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCR 187 (336)
Q Consensus 147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~ 187 (336)
..++|=+||| .|.+++.+|+...-..++++|.+++.++.|.
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~ 186 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGAT 186 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhh
Confidence 3456666876 5677788888774445778899888776654
No 360
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=63.90 E-value=9.6 Score=36.32 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=53.9
Q ss_pred CCCeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
.++.|+|.+|-.|.-+..+|... +..++.|+|.+.+..+.-++-+...|..++....+|...
T Consensus 213 ~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~ 275 (413)
T KOG2360|consen 213 PGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLN 275 (413)
T ss_pred CCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccC
Confidence 35789999999999999998864 478999999999999999999888898888888888654
No 361
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=63.89 E-value=11 Score=36.20 Aligned_cols=44 Identities=14% Similarity=0.052 Sum_probs=35.3
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL 192 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~ 192 (336)
+.+||-| |++||-++.++...| .+|++||+||..+...+-+.+.
T Consensus 36 ~d~vl~I-tSaG~N~L~yL~~~P-~~I~aVDlNp~Q~aLleLKlAa 79 (380)
T PF11899_consen 36 DDRVLTI-TSAGCNALDYLLAGP-KRIHAVDLNPAQNALLELKLAA 79 (380)
T ss_pred CCeEEEE-ccCCchHHHHHhcCC-ceEEEEeCCHHHHHHHHHHHHH
Confidence 5678888 566888888887776 6899999999998888766543
No 362
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=63.88 E-value=23 Score=29.70 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=17.5
Q ss_pred HHHHHHHHhcCcCCcEEEEEe
Q 019743 244 RSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 244 ~~~l~~~~~~LkpgG~l~~~~ 264 (336)
.+-+..+.++|||||.+++..
T Consensus 91 l~~m~~i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 91 LRAMAKIKCVLKPGGLLFLGV 111 (177)
T ss_pred HHHHHHHHHhhccCCeEEEEe
Confidence 367788999999999999943
No 363
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=63.80 E-value=22 Score=32.73 Aligned_cols=58 Identities=16% Similarity=0.276 Sum_probs=46.3
Q ss_pred CCCeEEEEeccccH---HHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 146 AQPLVVDIGSGNGL---FLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 146 ~~~~vLDiGcGsG~---~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
.+..||==|.|+|. ++..+|++ .++++..|+++.......+.+++.| .++...+|..+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r--g~~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~ 97 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR--GAKLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISD 97 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh--CCeEEEEeccccchHHHHHHHHhcC--ceeEEEecCCC
Confidence 35678888999883 66777777 5789999999999988888887775 68888888854
No 364
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=63.22 E-value=64 Score=30.98 Aligned_cols=93 Identities=18% Similarity=0.275 Sum_probs=59.3
Q ss_pred eEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCC--cEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 149 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT--NGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 149 ~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~--nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
.|+=++=..|.++..++...|. .+ .| |--+-.-.++|++.++++ .++++.+.. .+|..+|.+.+.
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~--~~-~d-s~~~~~~~~~n~~~n~~~~~~~~~~~~~~---------~~~~~~d~vl~~ 113 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPY--SI-GD-SYISELATRENLRLNGIDESSVKFLDSTA---------DYPQQPGVVLIK 113 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCC--ee-eh-HHHHHHHHHHHHHHcCCCcccceeecccc---------cccCCCCEEEEE
Confidence 6888999999999999966552 11 33 233334556788888875 355553321 134556766665
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 263 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~ 263 (336)
.|-. . -.....+..+...|.||+.++.-
T Consensus 114 ~PK~----~-----~~l~~~l~~l~~~l~~~~~ii~g 141 (378)
T PRK15001 114 VPKT----L-----ALLEQQLRALRKVVTSDTRIIAG 141 (378)
T ss_pred eCCC----H-----HHHHHHHHHHHhhCCCCCEEEEE
Confidence 4321 1 12356778899999999998763
No 365
>PRK08703 short chain dehydrogenase; Provisional
Probab=63.04 E-value=27 Score=30.47 Aligned_cols=58 Identities=10% Similarity=0.090 Sum_probs=38.3
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecch
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNA 205 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~ 205 (336)
+.+++=.|+ +|.++..+++.+ .+.+|++++.++..++.....+...+...+.++..|.
T Consensus 6 ~k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~ 65 (239)
T PRK08703 6 DKTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDL 65 (239)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeee
Confidence 357888885 556666666542 4688999999998777666655444333455566665
No 366
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=62.80 E-value=84 Score=29.17 Aligned_cols=97 Identities=13% Similarity=0.172 Sum_probs=52.0
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCe-EEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743 147 QPLVVDIGSG-NGLFLLGMARKRKDLN-FLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 147 ~~~vLDiGcG-sG~~~~~la~~~p~~~-v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
+.+||=.|+| .|.+++.+|+.. +.+ +++++.+++.++.++ ..|.+.+--...+....+.... +...+|.++
T Consensus 161 g~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~----~~Ga~~~i~~~~~~~~~~~~~~--~~~~~d~~v 233 (347)
T PRK10309 161 GKNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDINSEKLALAK----SLGAMQTFNSREMSAPQIQSVL--RELRFDQLI 233 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHH----HcCCceEecCcccCHHHHHHHh--cCCCCCeEE
Confidence 4456666875 456667778776 454 789999998877763 2343321111111111111111 112234222
Q ss_pred eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743 225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 263 (336)
Q Consensus 225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~ 263 (336)
+...- ....+..+.+.|++||++.+.
T Consensus 234 ~d~~G-------------~~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 234 LETAG-------------VPQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred EECCC-------------CHHHHHHHHHHhhcCCEEEEE
Confidence 32111 125677788999999998873
No 367
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=62.57 E-value=7.5 Score=39.26 Aligned_cols=35 Identities=14% Similarity=0.205 Sum_probs=29.4
Q ss_pred CCeEEEEeccccHHHHHHHHhCC-CCeEEEEecChH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRK-DLNFLGLEVNGK 181 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p-~~~v~giDis~~ 181 (336)
...||||||..|.+....++..| +.-|+|+|+-|-
T Consensus 45 a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 45 AHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred cchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 56899999999999988888765 567999998763
No 368
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=62.12 E-value=63 Score=29.78 Aligned_cols=95 Identities=18% Similarity=0.312 Sum_probs=54.3
Q ss_pred CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEE-EEecchhHHHHhhhcCCCCeEEEEE
Q 019743 147 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGY-FIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 147 ~~~vLDiGcGs-G~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~-~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
+.+||-.|+|. |..++.+|+.. +.+++++..+++..+.+++ .+.+.+- ....+..+.+.... +...+|.++
T Consensus 160 g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~--~~~~vd~vl 232 (337)
T cd08261 160 GDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELT--DGEGADVVI 232 (337)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHh--CCCCCCEEE
Confidence 55788888874 77888888876 7889999888887766633 3333221 11122222222222 222234332
Q ss_pred eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
-.. . ....+..+.+.|+++|+++.
T Consensus 233 d~~-g-------------~~~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 233 DAT-G-------------NPASMEEAVELVAHGGRVVL 256 (337)
T ss_pred ECC-C-------------CHHHHHHHHHHHhcCCEEEE
Confidence 110 0 12456777888999998875
No 369
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=61.41 E-value=18 Score=32.39 Aligned_cols=37 Identities=11% Similarity=0.163 Sum_probs=25.2
Q ss_pred CCCCcEEEEEcCCccc----------chHHHHHHHHh--ccceEEEehh
Q 019743 4 LDEKPYAAIIGGGNLC----------NKAAALHFLAS--RCDGLIFVGL 40 (336)
Q Consensus 4 ~~~~p~~~v~gG~k~~----------d~i~~~~~~l~--~~D~~l~~G~ 40 (336)
-|.++++.|||++++. +.|...-.+.. ++.++|+.|+
T Consensus 42 ~p~~d~ivVLGa~~~~~~g~ps~~l~~Rl~~A~~LYk~gk~~~ilvSGg 90 (239)
T PRK10834 42 LPYRQVGVVLGTAKYYRTGVINQYYRYRIQGAINAYNSGKVNYLLLSGD 90 (239)
T ss_pred CCCCCEEEEcCCcccCCCCCcCHHHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 5778999999998862 23333344443 5888888775
No 370
>PLN02740 Alcohol dehydrogenase-like
Probab=60.92 E-value=81 Score=29.89 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=30.1
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHH
Q 019743 147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRD 188 (336)
Q Consensus 147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~ 188 (336)
+.+||=+|+| .|..++.+|+...-.+++++|.+++.++.|++
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 4567777875 45566677777632369999999998888743
No 371
>PLN02827 Alcohol dehydrogenase-like
Probab=60.75 E-value=91 Score=29.60 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=28.7
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHH
Q 019743 147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCR 187 (336)
Q Consensus 147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~ 187 (336)
+..||=.|+| -|.+++.+|+..--..++++|.+++..+.|+
T Consensus 194 g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~ 235 (378)
T PLN02827 194 GSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAK 235 (378)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence 5677777875 4556666777763336999999998777764
No 372
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=60.69 E-value=37 Score=29.85 Aligned_cols=59 Identities=15% Similarity=0.098 Sum_probs=40.9
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+.++|=.|+ +|.++..+++.+ .+++++.++.+++.++...+.++..+ .++.++.+|+.+
T Consensus 11 ~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 71 (256)
T PRK06124 11 GQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG-GAAEALAFDIAD 71 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC-CceEEEEccCCC
Confidence 456777774 566677766643 47899999999887776666555444 357888888753
No 373
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=59.63 E-value=91 Score=28.76 Aligned_cols=40 Identities=23% Similarity=0.354 Sum_probs=27.8
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCe-EEEEecChHHHHHHH
Q 019743 147 QPLVVDIGSG-NGLFLLGMARKRKDLN-FLGLEVNGKLVTHCR 187 (336)
Q Consensus 147 ~~~vLDiGcG-sG~~~~~la~~~p~~~-v~giDis~~~l~~a~ 187 (336)
+.+||=+|+| .|.+++.+|+.. +++ +++++.+++..+.++
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~ 205 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAK 205 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHH
Confidence 4455556764 455666677776 556 999999988877764
No 374
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=59.61 E-value=1.4e+02 Score=28.66 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=22.3
Q ss_pred cccHHHHHHHHhC-CCCeEEEEecChHHHHHHHH
Q 019743 156 GNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRD 188 (336)
Q Consensus 156 GsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~ 188 (336)
|.|..+..+|... .+.+|+++|++++.++.+++
T Consensus 7 GlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 7 GTGYVGLSNGLLIAQNHEVVALDILPSRVAMLND 40 (388)
T ss_pred CCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHc
Confidence 5555554444321 25789999999999888765
No 375
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=59.54 E-value=43 Score=31.62 Aligned_cols=92 Identities=13% Similarity=0.191 Sum_probs=58.5
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEec----chhHHHHhhhc-CCCCeE
Q 019743 147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT----NATSTFRSIVA-SYPGKL 220 (336)
Q Consensus 147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~----d~~~~~d~ivs-npp~~~ 220 (336)
...+.=+||| -|.-++.-|+..-..+++++|++++.++.|++ .|.++ ++.. |+.+....+-. =.+|++
T Consensus 186 G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~----fGAT~--~vn~~~~~~vv~~i~~~T~gG~d~~~ 259 (366)
T COG1062 186 GDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK----FGATH--FVNPKEVDDVVEAIVELTDGGADYAF 259 (366)
T ss_pred CCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh----cCCce--eecchhhhhHHHHHHHhcCCCCCEEE
Confidence 5678888997 57777777887777899999999999999864 45432 2222 33332222221 123333
Q ss_pred EEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 221 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 221 d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
+.+- ..+.++++...+.++|...+
T Consensus 260 e~~G------------------~~~~~~~al~~~~~~G~~v~ 283 (366)
T COG1062 260 ECVG------------------NVEVMRQALEATHRGGTSVI 283 (366)
T ss_pred EccC------------------CHHHHHHHHHHHhcCCeEEE
Confidence 3211 12567777788888998877
No 376
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=58.83 E-value=49 Score=28.93 Aligned_cols=109 Identities=16% Similarity=0.153 Sum_probs=58.6
Q ss_pred ecc-ccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH------HHHhhhcCCCCeEEEEE
Q 019743 154 GSG-NGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS------TFRSIVASYPGKLILVS 224 (336)
Q Consensus 154 GcG-sG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~------~~d~ivsnpp~~~d~i~ 224 (336)
|+| |+.++..+|+.+ .+++|+.++.+.+.++.+.+.+....-. .++..|+.+ .++.+....+..+|.++
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~--~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV 78 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGA--EVIQCDLSDEESVEALFDEAVERFGGRIDILV 78 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTS--EEEESCTTSHHHHHHHHHHHHHHHCSSESEEE
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCC--ceEeecCcchHHHHHHHHHHHhhcCCCeEEEE
Confidence 455 344555555542 3799999999999876665555543222 358888843 35555543224556443
Q ss_pred ee--CCCC--CCCc-chh---h-hh------cchHHHHHHHHhcCcCCcEEEEEe
Q 019743 225 IQ--CPNP--DFNR-PEH---R-WR------MVQRSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 225 ~~--~~dp--~~~~-~~~---~-~~------l~~~~~l~~~~~~LkpgG~l~~~~ 264 (336)
.+ ...+ .... ... . .. .-.-.+.+.+.+.|+++|.+++.+
T Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~is 133 (241)
T PF13561_consen 79 NNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINIS 133 (241)
T ss_dssp EEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccc
Confidence 22 1111 0010 000 0 00 012356667777888999888844
No 377
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=58.80 E-value=1.5e+02 Score=27.18 Aligned_cols=93 Identities=12% Similarity=0.105 Sum_probs=54.8
Q ss_pred CCeEEEEec--cccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEec--chhHHHHhhhcCCCCeEEE
Q 019743 147 QPLVVDIGS--GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIAT--NATSTFRSIVASYPGKLIL 222 (336)
Q Consensus 147 ~~~vLDiGc--GsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~--d~~~~~d~ivsnpp~~~d~ 222 (336)
+.+||=.|. |.|..++.+|+.. +.++++++.+++..+.++ ..|.+.+--... ++.+..... .+..+|.
T Consensus 139 g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~----~lGa~~vi~~~~~~~~~~~~~~~---~~~gvdv 210 (325)
T TIGR02825 139 GETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLK----KLGFDVAFNYKTVKSLEETLKKA---SPDGYDC 210 (325)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH----HcCCCEEEeccccccHHHHHHHh---CCCCeEE
Confidence 456766673 5788888888876 678999999988777664 345543221111 222222221 1223454
Q ss_pred EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
++ ...- ...+..+.++|+++|+++.
T Consensus 211 v~-d~~G--------------~~~~~~~~~~l~~~G~iv~ 235 (325)
T TIGR02825 211 YF-DNVG--------------GEFSNTVIGQMKKFGRIAI 235 (325)
T ss_pred EE-ECCC--------------HHHHHHHHHHhCcCcEEEE
Confidence 33 2110 1345777889999999986
No 378
>PRK07454 short chain dehydrogenase; Provisional
Probab=58.68 E-value=44 Score=29.05 Aligned_cols=58 Identities=9% Similarity=0.033 Sum_probs=39.7
Q ss_pred CeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 148 PLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 148 ~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
.++|=.|+ +|.++..++++. .+.+|++++.+++..+...+.....+ .++.++.+|+.+
T Consensus 7 k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 66 (241)
T PRK07454 7 PRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG-VKAAAYSIDLSN 66 (241)
T ss_pred CEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCC
Confidence 46777784 666777776653 46789999999877665555444332 468888898854
No 379
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=58.64 E-value=1e+02 Score=29.96 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=33.7
Q ss_pred ccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 155 SGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 155 cGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
||.|.++..+++.. .+..++.+|.+++.++.++++ ..+.++.+|..+
T Consensus 6 iG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~------~~~~~~~gd~~~ 54 (453)
T PRK09496 6 VGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR------LDVRTVVGNGSS 54 (453)
T ss_pred ECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh------cCEEEEEeCCCC
Confidence 35588888888752 367899999999987765431 136778888764
No 380
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=58.54 E-value=39 Score=32.44 Aligned_cols=65 Identities=8% Similarity=0.002 Sum_probs=44.9
Q ss_pred HhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC
Q 019743 192 LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD 265 (336)
Q Consensus 192 ~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~ 265 (336)
+.++++++++++++.+.+.. .||.+++...+.---.|... ....+.++++.+.++|||++++.+.
T Consensus 271 r~~~drv~i~t~si~~~L~~---~~~~s~~~~vL~D~~Dwm~~------~~~~~~~~~l~~~~~pgaRV~~Rsa 335 (380)
T PF11899_consen 271 RARLDRVRIHTDSIEEVLRR---LPPGSFDRFVLSDHMDWMDP------EQLNEEWQELARTARPGARVLWRSA 335 (380)
T ss_pred hcCCCeEEEEeccHHHHHHh---CCCCCeeEEEecchhhhCCH------HHHHHHHHHHHHHhCCCCEEEEeeC
Confidence 34567899999998876543 37888887654311123221 2346888999999999999999653
No 381
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=58.50 E-value=13 Score=32.69 Aligned_cols=45 Identities=16% Similarity=0.103 Sum_probs=40.7
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQ 191 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~ 191 (336)
....+|.-.|+|..+.++.+.+|+..++++|.+|-+-+.|+-...
T Consensus 44 g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~ 88 (303)
T KOG2782|consen 44 GRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSD 88 (303)
T ss_pred CceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhH
Confidence 567899999999999999999999999999999999988876653
No 382
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=58.07 E-value=72 Score=27.14 Aligned_cols=116 Identities=16% Similarity=0.134 Sum_probs=53.6
Q ss_pred cccHHHHHHHHh--CCCCeEEEEecChHHHHHHHHHH------------HHhC-CCcEEEEecchhHHHHhhhcCCCCeE
Q 019743 156 GNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSL------------QLSG-ITNGYFIATNATSTFRSIVASYPGKL 220 (336)
Q Consensus 156 GsG~~~~~la~~--~p~~~v~giDis~~~l~~a~~n~------------~~~~-~~nv~~~~~d~~~~~d~ivsnpp~~~ 220 (336)
|.|.+++.+|.. ..+.+|+|+|++++.++..++-. ++.. ..++++. .|... .++ ..
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~----ai~----~a 77 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEE----AIK----DA 77 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHH----HHH----H-
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhh----hhh----cc
Confidence 444444443332 23689999999999877654210 0000 1122221 22221 111 12
Q ss_pred EEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCc-HHHHH-HHHHHHHHcC
Q 019743 221 ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVML-RMKQQFLEYG 281 (336)
Q Consensus 221 d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~-~~~~~l~~~g 281 (336)
|.+++..|.|....... +.......++.+.+.|+++-.+.+++-. ....+ .+..++++.+
T Consensus 78 dv~~I~VpTP~~~~~~~-Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~ 139 (185)
T PF03721_consen 78 DVVFICVPTPSDEDGSP-DLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRS 139 (185)
T ss_dssp SEEEE----EBETTTSB-ETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred ceEEEecCCCccccCCc-cHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhc
Confidence 34445555554221111 1122467889999999998888885522 22233 5556677655
No 383
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=57.72 E-value=29 Score=25.22 Aligned_cols=59 Identities=12% Similarity=0.121 Sum_probs=41.6
Q ss_pred CCCeEEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceee
Q 019743 216 YPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVL 287 (336)
Q Consensus 216 pp~~~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 287 (336)
+.+.+|..-..+|-|. --++...+-|++|+.+.+.++.....+.+.....+.|+.....
T Consensus 8 ~~~~lD~~Gl~CP~Pl-------------l~~kk~l~~l~~G~~l~V~~dd~~~~~di~~~~~~~G~~~~~~ 66 (81)
T PRK00299 8 PDHTLDALGLRCPEPV-------------MMVRKTVRNMQPGETLLIIADDPATTRDIPSFCRFMDHELLAQ 66 (81)
T ss_pred cCeEEecCCCCCCHHH-------------HHHHHHHHcCCCCCEEEEEeCCccHHHHHHHHHHHcCCEEEEE
Confidence 4455554444555553 2345666778999999998887777788888889999886543
No 384
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=57.70 E-value=19 Score=33.53 Aligned_cols=122 Identities=14% Similarity=0.144 Sum_probs=68.4
Q ss_pred EEEEeccccHHHHHHHHhCCCCe-EEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCC
Q 019743 150 VVDIGSGNGLFLLGMARKRKDLN-FLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCP 228 (336)
Q Consensus 150 vLDiGcGsG~~~~~la~~~p~~~-v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~ 228 (336)
|+|+-||.|.+...+.+.. .+ +.++|+++.+++.-+.|.. + .++++|+.+.-..-+ | .+|.+...+|
T Consensus 1 vidLF~G~GG~~~Gl~~aG--~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~~---~-~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG--FKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSDI---P-DFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHcC--CeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhhC---C-CcCEEEecCC
Confidence 5899999999998887663 44 5689999999998877642 2 345677765411111 2 2455444443
Q ss_pred CCCCCcchh-----hhh-cchHHHHHHHHhcCcCCcEEEEEeCcH--------HHHHHHHHHHHHcCCccee
Q 019743 229 NPDFNRPEH-----RWR-MVQRSLVEAVSDLLVHDGKVFLQSDIE--------EVMLRMKQQFLEYGKGKLV 286 (336)
Q Consensus 229 dp~~~~~~~-----~~~-l~~~~~l~~~~~~LkpgG~l~~~~~~~--------~~~~~~~~~l~~~g~~~~~ 286 (336)
-..+..... ..| .....+++.+ +.++|. .+++|. .. .....+.+.|+..||....
T Consensus 69 Cq~fS~ag~~~~~~d~r~~L~~~~~r~i-~~~~P~-~~v~EN-V~~l~~~~~~~~~~~i~~~l~~~GY~v~~ 137 (315)
T TIGR00675 69 CQPFSIAGKRKGFEDTRGTLFFEIVRIL-KEKKPK-FFLLEN-VKGLVSHDKGRTFKVIIETLEELGYKVYY 137 (315)
T ss_pred CcccchhcccCCCCCchhhHHHHHHHHH-hhcCCC-EEEeec-cHHHHhcccchHHHHHHHHHHhCCCEEEE
Confidence 322221111 111 1223444333 345674 455543 22 2355667778888886543
No 385
>PRK08339 short chain dehydrogenase; Provisional
Probab=57.30 E-value=51 Score=29.39 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=39.4
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+.++|=.|+++| ++.++|++. .+++|+.++.+++.++.+.+......-.++.++++|+.+
T Consensus 8 ~k~~lItGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~ 69 (263)
T PRK08339 8 GKLAFTTASSKG-IGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTK 69 (263)
T ss_pred CCEEEEeCCCCc-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC
Confidence 346676777655 455554442 368999999998877776665544322468888888754
No 386
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=56.83 E-value=93 Score=28.47 Aligned_cols=94 Identities=16% Similarity=0.138 Sum_probs=52.6
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCe-EEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743 147 QPLVVDIGSG-NGLFLLGMARKRKDLN-FLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 147 ~~~vLDiGcG-sG~~~~~la~~~p~~~-v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
+.+||-+|+| .|..++.+|+.. +.+ +++++.+++..+.+++ .+.+ .++..+-........ ++...+|.++
T Consensus 160 g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~-~~~~~vd~v~ 231 (334)
T cd08234 160 GDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKK----LGAT--ETVDPSREDPEAQKE-DNPYGFDVVI 231 (334)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHH----hCCe--EEecCCCCCHHHHHH-hcCCCCcEEE
Confidence 4677888876 367777888876 455 8899999887776633 3433 222221111101011 1222344332
Q ss_pred eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
-... ....+..+.+.|+++|+++.
T Consensus 232 ~~~~--------------~~~~~~~~~~~l~~~G~~v~ 255 (334)
T cd08234 232 EATG--------------VPKTLEQAIEYARRGGTVLV 255 (334)
T ss_pred ECCC--------------ChHHHHHHHHHHhcCCEEEE
Confidence 2110 12566777888999998875
No 387
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=56.81 E-value=73 Score=25.52 Aligned_cols=68 Identities=15% Similarity=0.244 Sum_probs=33.0
Q ss_pred CCeEEEEecccc-HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 147 QPLVVDIGSGNG-LFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 147 ~~~vLDiGcGsG-~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
..+++|+|-|.= ..+..|++. +..++++|+.+. ++. .| +.++.-|+++.--.+. ...+.++.
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~-------~a~-~g---~~~v~DDif~P~l~iY----~~a~lIYS 76 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR-------KAP-EG---VNFVVDDIFNPNLEIY----EGADLIYS 76 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S------------S---TTEE---SSS--HHHH----TTEEEEEE
T ss_pred CCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc-------ccc-cC---cceeeecccCCCHHHh----cCCcEEEE
Confidence 458999999964 355556655 589999999987 222 23 5577777654200111 12566666
Q ss_pred eCCCCC
Q 019743 226 QCPNPD 231 (336)
Q Consensus 226 ~~~dp~ 231 (336)
.-|-|.
T Consensus 77 iRPP~E 82 (127)
T PF03686_consen 77 IRPPPE 82 (127)
T ss_dssp ES--TT
T ss_pred eCCChH
Confidence 555554
No 388
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=56.77 E-value=1.1e+02 Score=25.21 Aligned_cols=103 Identities=13% Similarity=0.095 Sum_probs=52.1
Q ss_pred EeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCC
Q 019743 153 IGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNP 230 (336)
Q Consensus 153 iGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp 230 (336)
||+ |..+..+|++. .+..+++.|++++..+...+ .+ ++.. .+..+..+. .|.+++..+++
T Consensus 7 IGl--G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~----~g---~~~~-~s~~e~~~~--------~dvvi~~v~~~ 68 (163)
T PF03446_consen 7 IGL--GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAE----AG---AEVA-DSPAEAAEQ--------ADVVILCVPDD 68 (163)
T ss_dssp E----SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHH----TT---EEEE-SSHHHHHHH--------BSEEEE-SSSH
T ss_pred Ech--HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHH----hh---hhhh-hhhhhHhhc--------ccceEeecccc
Confidence 455 56666666552 36889999999987766543 22 3332 333332111 13344443443
Q ss_pred CCCcchhhhhcchHHHHHH--HHhcCcCCcEEEEE-eCcHHHHHHHHHHHHHcCCc
Q 019743 231 DFNRPEHRWRMVQRSLVEA--VSDLLVHDGKVFLQ-SDIEEVMLRMKQQFLEYGKG 283 (336)
Q Consensus 231 ~~~~~~~~~~l~~~~~l~~--~~~~LkpgG~l~~~-~~~~~~~~~~~~~l~~~g~~ 283 (336)
. ..+.++.. +...|++|..++-. |.......++.+.+.+.|..
T Consensus 69 ~----------~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~ 114 (163)
T PF03446_consen 69 D----------AVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVR 114 (163)
T ss_dssp H----------HHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE
T ss_pred h----------hhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccce
Confidence 1 12355555 66667666554432 22344466777777777744
No 389
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=56.37 E-value=57 Score=28.31 Aligned_cols=59 Identities=8% Similarity=-0.000 Sum_probs=40.5
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+..+|=.| |+|.++..++++. .+.+|+.++.++...+.........+ .++.++..|+.+
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 67 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG-VKVVIATADVSD 67 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-CeEEEEECCCCC
Confidence 34577778 4777888777652 47799999999877665555444333 368888888743
No 390
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=56.02 E-value=19 Score=31.81 Aligned_cols=59 Identities=12% Similarity=0.107 Sum_probs=41.5
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+..|.+||.|.|.++.++.... -.+...+|+++..+.-.+--.+ ..-......++|++.
T Consensus 51 ~~~v~eIgPgpggitR~il~a~-~~RL~vVE~D~RFip~LQ~L~E-Aa~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 51 NAYVYEIGPGPGGITRSILNAD-VARLLVVEKDTRFIPGLQMLSE-AAPGKLRIHHGDVLR 109 (326)
T ss_pred cceeEEecCCCCchhHHHHhcc-hhheeeeeeccccChHHHHHhh-cCCcceEEeccccce
Confidence 5689999999999999998664 3467788888776655443333 222356677777754
No 391
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=55.54 E-value=53 Score=29.78 Aligned_cols=46 Identities=24% Similarity=0.312 Sum_probs=39.6
Q ss_pred CCCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHh
Q 019743 146 AQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS 193 (336)
Q Consensus 146 ~~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~ 193 (336)
.+..|||-=+|||..+++..+. +.+++|+|+++.-++.+.++....
T Consensus 222 ~~diVlDpf~GsGtt~~aa~~~--~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 222 PGDIVLDPFAGSGTTGIAAKNL--GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CCCEEeecCCCCChHHHHHHHc--CCceEEEecCHHHHHHHHHHHHhh
Confidence 3679999999999988877665 678999999999999999988754
No 392
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.12 E-value=24 Score=33.50 Aligned_cols=59 Identities=12% Similarity=0.022 Sum_probs=40.7
Q ss_pred CeEEEEeccccHHHHHHHHhCCCCeEEE---EecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 148 PLVVDIGSGNGLFLLGMARKRKDLNFLG---LEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 148 ~~vLDiGcGsG~~~~~la~~~p~~~v~g---iDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
..++|.|||-|.++..++...+..+++- +|.....+..=......+. .-+.=++.|+.+
T Consensus 184 ~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~~~~~-~vi~R~riDI~d 245 (420)
T KOG2811|consen 184 SCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLRNKNS-LVIKRIRIDIED 245 (420)
T ss_pred ceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhhhhhhhhhccCc-chhheeEeeHHh
Confidence 5899999999999999999988877777 8887766554333222211 224445667655
No 393
>PRK06172 short chain dehydrogenase; Provisional
Probab=54.91 E-value=52 Score=28.85 Aligned_cols=59 Identities=10% Similarity=0.044 Sum_probs=40.3
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+.++|=.|+ +|.++..+++++ .+.+++.++.+++.++.+.+.+...+ .++.++.+|+.+
T Consensus 7 ~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 67 (253)
T PRK06172 7 GKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG-GEALFVACDVTR 67 (253)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCC
Confidence 356777776 455666665542 35789999999887776666655443 458888888853
No 394
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=54.76 E-value=52 Score=28.97 Aligned_cols=59 Identities=14% Similarity=0.149 Sum_probs=41.6
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+.++|=.| |+|.++..+++.. .+.+|+.++.+.+.++.........+ .++.++.+|+.+
T Consensus 12 ~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~-~~~~~~~~Dl~d 72 (259)
T PRK08213 12 GKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG-IDALWIAADVAD 72 (259)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEccCCC
Confidence 45677777 5677788777653 36789999999887776665554433 357788888864
No 395
>PRK06949 short chain dehydrogenase; Provisional
Probab=54.69 E-value=77 Score=27.76 Aligned_cols=59 Identities=8% Similarity=0.059 Sum_probs=40.8
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+.++|=.| |+|.++..+++.. .+.+|++++.+++.++.........+ .++.++.+|+.+
T Consensus 9 ~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~ 69 (258)
T PRK06949 9 GKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG-GAAHVVSLDVTD 69 (258)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCC
Confidence 45677778 5666777776653 46789999999888776666554333 357788888753
No 396
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=54.52 E-value=1.4e+02 Score=26.85 Aligned_cols=109 Identities=8% Similarity=0.041 Sum_probs=60.3
Q ss_pred CeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhC---CCcEEEEecchhHHHHhhhcCCC---CeEE
Q 019743 148 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG---ITNGYFIATNATSTFRSIVASYP---GKLI 221 (336)
Q Consensus 148 ~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~---~~nv~~~~~d~~~~~d~ivsnpp---~~~d 221 (336)
..|+.||||-=.-...+.. .++.+++=+|. |+.++.-++.+.+++ ..+.+++..|+...+...+.... ....
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~-~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~pt 160 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPW-PDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPT 160 (260)
T ss_pred cEEEEeCCccccHHHhcCC-CCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCe
Confidence 4699999998766666532 12466666663 556665555565543 24688888888632211121111 1111
Q ss_pred EEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEe
Q 019743 222 LVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 222 ~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~ 264 (336)
.+.....-.+... ....++++.+.+...||+.++++.
T Consensus 161 l~i~EGvl~YL~~------~~v~~ll~~i~~~~~~gs~l~~d~ 197 (260)
T TIGR00027 161 AWLWEGLLMYLTE------EAVDALLAFIAELSAPGSRLAFDY 197 (260)
T ss_pred eeeecchhhcCCH------HHHHHHHHHHHHhCCCCcEEEEEe
Confidence 1111111111110 123578889988888999999965
No 397
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=54.40 E-value=1.7e+02 Score=26.57 Aligned_cols=93 Identities=15% Similarity=0.168 Sum_probs=54.3
Q ss_pred CCeEEEEe--ccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEe-cchhHHHHhhhcCCCCeEEEE
Q 019743 147 QPLVVDIG--SGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA-TNATSTFRSIVASYPGKLILV 223 (336)
Q Consensus 147 ~~~vLDiG--cGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~-~d~~~~~d~ivsnpp~~~d~i 223 (336)
+.+||=.| .|.|..++.+|+.. ++++++++.+++..+.+++ .|.+.+--.. .|+.+.+... . +..+|.+
T Consensus 144 g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~-~--~~gvd~v 215 (329)
T cd08294 144 GETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEA-A--PDGIDCY 215 (329)
T ss_pred CCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHH-C--CCCcEEE
Confidence 45566566 46778888899886 6789999988887776643 4544321111 2222222211 1 2334543
Q ss_pred EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
+ .. .-...+..+.+.|+++|++..
T Consensus 216 l-d~--------------~g~~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 216 F-DN--------------VGGEFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred E-EC--------------CCHHHHHHHHHhhccCCEEEE
Confidence 2 21 112456777888999999875
No 398
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=53.49 E-value=21 Score=29.49 Aligned_cols=103 Identities=14% Similarity=0.105 Sum_probs=52.4
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEee
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQ 226 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~ 226 (336)
..-|||+|=|.|..=-.|-+.+|+.+++.+|..-..--.+. -+.=.++.+|+.+.++. ...-......++..
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~-------P~~~~~ilGdi~~tl~~-~~~~g~~a~laHaD 100 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSST-------PPEEDLILGDIRETLPA-LARFGAGAALAHAD 100 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG----------GGGEEES-HHHHHHH-HHHH-S-EEEEEE-
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCC-------CchHheeeccHHHHhHH-HHhcCCceEEEEee
Confidence 35699999999999999999999999999997532111110 01234788998876544 11012222323332
Q ss_pred CCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEE
Q 019743 227 CPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVF 261 (336)
Q Consensus 227 ~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~ 261 (336)
+-... + .++..+...+-..+..+|.|||.++
T Consensus 101 ~G~g~---~-~~d~a~a~~lspli~~~la~gGi~v 131 (160)
T PF12692_consen 101 IGTGD---K-EKDDATAAWLSPLIAPVLAPGGIMV 131 (160)
T ss_dssp ---S----H-HHHHHHHHHHHHHHGGGEEEEEEEE
T ss_pred cCCCC---c-chhHHHHHhhhHHHHHHhcCCcEEE
Confidence 21110 0 1122233456667888999999866
No 399
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=53.46 E-value=54 Score=28.79 Aligned_cols=59 Identities=12% Similarity=0.028 Sum_probs=41.7
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+.++|=.| |+|.++..++++. .+.+|++++.++..++.....+...+ .++.+++.|+.+
T Consensus 10 ~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~-~~~~~~~~D~~~ 70 (255)
T PRK07523 10 GRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG-LSAHALAFDVTD 70 (255)
T ss_pred CCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-ceEEEEEccCCC
Confidence 45778778 4677777777653 46789999999887776666665443 347788888754
No 400
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=53.29 E-value=23 Score=31.94 Aligned_cols=79 Identities=16% Similarity=0.232 Sum_probs=44.5
Q ss_pred HHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEEeeCCCCCCCcchhhh
Q 019743 160 FLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRW 239 (336)
Q Consensus 160 ~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~~~~~dp~~~~~~~~~ 239 (336)
++..|.+..++.+|+|.|.++..++.|.+ .|...-. ..+ . +. ++ . .|.+++..|-
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~----~g~~~~~--~~~-~---~~-~~--~--~DlvvlavP~---------- 55 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALE----LGIIDEA--STD-I---EA-VE--D--ADLVVLAVPV---------- 55 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHH----TTSSSEE--ESH-H---HH-GG--C--CSEEEE-S-H----------
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHH----CCCeeec--cCC-H---hH-hc--C--CCEEEEcCCH----------
Confidence 46778888889999999999998887753 3543211 111 1 11 22 1 1433333221
Q ss_pred hcchHHHHHHHHhcCcCCcEEEEEe
Q 019743 240 RMVQRSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 240 ~l~~~~~l~~~~~~LkpgG~l~~~~ 264 (336)
....++++++...+++|..+.=.+
T Consensus 56 -~~~~~~l~~~~~~~~~~~iv~Dv~ 79 (258)
T PF02153_consen 56 -SAIEDVLEEIAPYLKPGAIVTDVG 79 (258)
T ss_dssp -HHHHHHHHHHHCGS-TTSEEEE--
T ss_pred -HHHHHHHHHhhhhcCCCcEEEEeC
Confidence 134588888888888887655433
No 401
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=52.81 E-value=1.5e+02 Score=27.42 Aligned_cols=96 Identities=16% Similarity=0.128 Sum_probs=52.2
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEE-EEecchhHHHHhhhcCCCCeEEEEE
Q 019743 147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGY-FIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~-~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
+.+||=.|+| .|..++.+|+...-..++++|.+++..+.+++ .|.+.+. ....+....+.... +...+|.++
T Consensus 167 g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~--~~~~~d~vl 240 (351)
T cd08285 167 GDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLT--GGKGVDAVI 240 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHh--CCCCCcEEE
Confidence 4566666775 56666777877633369999999887776653 4443221 11112222111111 112234332
Q ss_pred eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
.+.. ....+..+.+.|+++|++..
T Consensus 241 -d~~g-------------~~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 241 -IAGG-------------GQDTFEQALKVLKPGGTISN 264 (351)
T ss_pred -ECCC-------------CHHHHHHHHHHhhcCCEEEE
Confidence 2111 12567788888999998775
No 402
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=52.75 E-value=1.6e+02 Score=28.58 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=59.0
Q ss_pred eEEEEeccccH--HHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhh-------hcCCCCe
Q 019743 149 LVVDIGSGNGL--FLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSI-------VASYPGK 219 (336)
Q Consensus 149 ~vLDiGcGsG~--~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~i-------vsnpp~~ 219 (336)
+|.=||.|.-. ++..|++. +.+|+++|++++.++..+ .+. ..+...+..+.+... .+.+...
T Consensus 5 kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~-----~g~--~~~~e~~l~~~l~~~~~~g~l~~~~~~~~ 75 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTIN-----RGE--IHIVEPDLDMVVKTAVEGGYLRATTTPEP 75 (415)
T ss_pred EEEEECcchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHH-----CCC--CCcCCCCHHHHHHHHhhcCceeeeccccc
Confidence 45556666432 23333333 578999999999877531 121 111122221111100 0001112
Q ss_pred EEEEEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeC-cHHHHHHHHHHHHHc
Q 019743 220 LILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSD-IEEVMLRMKQQFLEY 280 (336)
Q Consensus 220 ~d~i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~l~~~ 280 (336)
.|.+++..|.|....... +.......++.+.+.|++|-.++.++- .....+.+...+.+.
T Consensus 76 aDvvii~vptp~~~~~~~-dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~ 136 (415)
T PRK11064 76 ADAFLIAVPTPFKGDHEP-DLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA 136 (415)
T ss_pred CCEEEEEcCCCCCCCCCc-ChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 355566666663211111 111224566788889998887777543 234455666555543
No 403
>PRK07677 short chain dehydrogenase; Provisional
Probab=52.74 E-value=59 Score=28.53 Aligned_cols=56 Identities=11% Similarity=0.106 Sum_probs=37.2
Q ss_pred eEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchh
Q 019743 149 LVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNAT 206 (336)
Q Consensus 149 ~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~ 206 (336)
++|=.|+++| ++..+++.+ .+.++++++.++..++.+.+.+...+ .++.++.+|+.
T Consensus 3 ~~lItG~s~g-iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~ 60 (252)
T PRK07677 3 VVIITGGSSG-MGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVR 60 (252)
T ss_pred EEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCC
Confidence 4666677554 555555432 36789999999887776665554433 46888888874
No 404
>PRK07576 short chain dehydrogenase; Provisional
Probab=52.50 E-value=69 Score=28.47 Aligned_cols=58 Identities=22% Similarity=0.235 Sum_probs=38.9
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchh
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNAT 206 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~ 206 (336)
+.++|=.| |+|.++..+++.+ .+++|++++.+++.++...+.....+ .++.++..|+.
T Consensus 9 ~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~ 68 (264)
T PRK07576 9 GKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG-PEGLGVSADVR 68 (264)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-CceEEEECCCC
Confidence 45677777 5666777766542 47789999999887766555444433 34677888875
No 405
>PRK06125 short chain dehydrogenase; Provisional
Probab=52.21 E-value=68 Score=28.25 Aligned_cols=60 Identities=10% Similarity=-0.035 Sum_probs=39.9
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+.++|=.|+++ .++..+++.+ .+++|++++.+++.++.+...+......++.++..|+.+
T Consensus 7 ~k~vlItG~~~-giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~ 68 (259)
T PRK06125 7 GKRVLITGASK-GIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSS 68 (259)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC
Confidence 35677778644 4666655442 367999999998877776665554333457788888753
No 406
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.61 E-value=63 Score=27.91 Aligned_cols=58 Identities=14% Similarity=0.029 Sum_probs=39.4
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+.++|=.|++ |.++..+++.. .+.+|++++.+++..+.+.+..... .++.++.+|+.+
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~ 64 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY--GNIHYVVGDVSS 64 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEECCCCC
Confidence 3568888875 55666665542 4779999999988776654444332 367888888764
No 407
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=51.58 E-value=2e+02 Score=26.51 Aligned_cols=94 Identities=10% Similarity=0.106 Sum_probs=55.4
Q ss_pred CCeEEEEec--cccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEE-Eec-chhHHHHhhhcCCCCeEEE
Q 019743 147 QPLVVDIGS--GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYF-IAT-NATSTFRSIVASYPGKLIL 222 (336)
Q Consensus 147 ~~~vLDiGc--GsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~-~~~-d~~~~~d~ivsnpp~~~d~ 222 (336)
+.+||=.|+ |.|.+++.+|+.. +.++++++.+++..+.+++. .|.+.+-- -.. +..+.+.... + ..+|.
T Consensus 152 g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~--~-~gvd~ 224 (338)
T cd08295 152 GETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYF--P-NGIDI 224 (338)
T ss_pred CCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhC--C-CCcEE
Confidence 456776775 5777888888876 67899999888877766542 35443211 111 3322222221 2 23454
Q ss_pred EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
++ ... -...+..+.+.|+++|+++.
T Consensus 225 v~-d~~--------------g~~~~~~~~~~l~~~G~iv~ 249 (338)
T cd08295 225 YF-DNV--------------GGKMLDAVLLNMNLHGRIAA 249 (338)
T ss_pred EE-ECC--------------CHHHHHHHHHHhccCcEEEE
Confidence 32 211 01456777889999999886
No 408
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=51.56 E-value=71 Score=28.08 Aligned_cols=58 Identities=17% Similarity=0.201 Sum_probs=37.9
Q ss_pred eEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHh-CCCcEEEEecchhH
Q 019743 149 LVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLS-GITNGYFIATNATS 207 (336)
Q Consensus 149 ~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~-~~~nv~~~~~d~~~ 207 (336)
.+|=.| |+|.++..+++.+ .+++++.+|.++...+......... +..++.++.+|+.+
T Consensus 4 ~ilItG-~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 64 (259)
T PRK12384 4 VAVVIG-GGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATS 64 (259)
T ss_pred EEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCC
Confidence 466677 4566666666543 4689999999987776555444332 22358888888753
No 409
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=51.47 E-value=1.5e+02 Score=27.84 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=30.5
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHH
Q 019743 147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRD 188 (336)
Q Consensus 147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~ 188 (336)
+.+||=.|+| .|..++.+|+..--.+++++|.+++.++.|++
T Consensus 186 g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 186 GDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 4566667875 46677778887633379999999998887744
No 410
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=51.39 E-value=1.7e+02 Score=26.91 Aligned_cols=93 Identities=11% Similarity=0.123 Sum_probs=54.2
Q ss_pred CeEEEEec--cccHHHHHHHHhCCCC-eEEEEecChHHHHHHHHHHHHhCCCcEEEEe-cchhHHHHhhhcCCCCeEEEE
Q 019743 148 PLVVDIGS--GNGLFLLGMARKRKDL-NFLGLEVNGKLVTHCRDSLQLSGITNGYFIA-TNATSTFRSIVASYPGKLILV 223 (336)
Q Consensus 148 ~~vLDiGc--GsG~~~~~la~~~p~~-~v~giDis~~~l~~a~~n~~~~~~~nv~~~~-~d~~~~~d~ivsnpp~~~d~i 223 (336)
.+||=.|. |.|..++.+|+.. ++ ++++++.+++..+.+++. .|.+.+-... .++.+.+... . + ..+|.+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~-~-~-~gvd~v 228 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLREL-C-P-EGVDVY 228 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHH-C-C-CCceEE
Confidence 46666664 5788888899886 56 799999998877666542 4544322111 2222222222 1 2 234543
Q ss_pred EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
+ .... ...+..+.+.|+++|+++.
T Consensus 229 i-d~~g--------------~~~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 229 F-DNVG--------------GEISDTVISQMNENSHIIL 252 (345)
T ss_pred E-ECCC--------------cHHHHHHHHHhccCCEEEE
Confidence 3 2111 1234677789999999886
No 411
>PRK07814 short chain dehydrogenase; Provisional
Probab=50.70 E-value=73 Score=28.21 Aligned_cols=59 Identities=10% Similarity=0.103 Sum_probs=40.1
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+.++|=.|. +|.++.++++.. .+++|++++.+++.++...+.....+ .++.++..|..+
T Consensus 10 ~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~ 70 (263)
T PRK07814 10 DQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG-RRAHVVAADLAH 70 (263)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCC
Confidence 456777784 566777666542 46899999999887766655554333 357788888753
No 412
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=50.01 E-value=70 Score=25.74 Aligned_cols=69 Identities=22% Similarity=0.263 Sum_probs=41.2
Q ss_pred EEEEEcCCccc--------chHHHHHHHHh--ccceEEEehh-----------HHHHHHHHcCCCCCCccccCCc---hH
Q 019743 9 YAAIIGGGNLC--------NKAAALHFLAS--RCDGLIFVGL-----------MSFQIMHALGLPVPPELVEKGA---ND 64 (336)
Q Consensus 9 ~~~v~gG~k~~--------d~i~~~~~~l~--~~D~~l~~G~-----------v~~~fl~a~g~~~g~~~~~~~~---~~ 64 (336)
.+.||||..-. ..+.-.-.++. .+..++++|+ +..-+|...|++-..-++|..- .+
T Consensus 2 ~IvVLG~~~~~~~~~~~~~~R~~~a~~l~~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~~~I~~e~~s~~T~e 81 (150)
T cd06259 2 AIVVLGGGVNGDGPSPILAERLDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVPAEAILLEDRSTNTYE 81 (150)
T ss_pred EEEEeCCccCCCCCChHHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCHHHeeecCCCCCHHH
Confidence 57899999775 46665555554 4888999766 3445566667644333444443 44
Q ss_pred HHHHHHHHHHhcC
Q 019743 65 AASDLIQFARDKH 77 (336)
Q Consensus 65 ~a~~l~~~~~~~~ 77 (336)
.|....+.+++.+
T Consensus 82 na~~~~~~~~~~~ 94 (150)
T cd06259 82 NARFSAELLRERG 94 (150)
T ss_pred HHHHHHHHHHhcC
Confidence 4444444454443
No 413
>PRK05867 short chain dehydrogenase; Provisional
Probab=49.95 E-value=68 Score=28.14 Aligned_cols=59 Identities=10% Similarity=0.011 Sum_probs=40.0
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+.++|=.|+++| ++..+++.. .+.+|+.++.+++.++...+.+...+ .++.++..|+.+
T Consensus 9 ~k~vlVtGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~ 69 (253)
T PRK05867 9 GKRALITGASTG-IGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQ 69 (253)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCC
Confidence 457888887654 455555442 36789999999888777766655444 457788888753
No 414
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.12 E-value=82 Score=27.34 Aligned_cols=58 Identities=19% Similarity=0.093 Sum_probs=39.1
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchh
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNAT 206 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~ 206 (336)
+.++|=.|+ +|.++..+++.. .+.+++.++.++..++.+.+.+...+ .++.+++.|+.
T Consensus 5 ~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~ 64 (253)
T PRK08217 5 DKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG-TEVRGYAANVT 64 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCC
Confidence 456777775 455666666542 36789999999887776666555433 35778888864
No 415
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=49.03 E-value=32 Score=31.50 Aligned_cols=41 Identities=24% Similarity=0.287 Sum_probs=29.8
Q ss_pred eEEEEeccc--cHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHH
Q 019743 149 LVVDIGSGN--GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQ 191 (336)
Q Consensus 149 ~vLDiGcGs--G~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~ 191 (336)
+|-=||+|+ +.++..+|.. +..|+..|.+++.++.+.+++.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~~~~~~~~i~ 49 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARA--GVDVLVFETTEELATAGRNRIE 49 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHH
Confidence 566778873 3455555544 7899999999999998776643
No 416
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=49.00 E-value=37 Score=31.69 Aligned_cols=42 Identities=7% Similarity=0.061 Sum_probs=30.6
Q ss_pred CCeEEEEecc-ccHHHHHHHHh-CCCCeEEEEecChHHHHHHHH
Q 019743 147 QPLVVDIGSG-NGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRD 188 (336)
Q Consensus 147 ~~~vLDiGcG-sG~~~~~la~~-~p~~~v~giDis~~~l~~a~~ 188 (336)
+.+||=+||| .|.+++.+|+. ....+++++|.+++.++.|++
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 5678888886 44455666765 445789999999988887753
No 417
>PRK08251 short chain dehydrogenase; Provisional
Probab=48.59 E-value=86 Score=27.27 Aligned_cols=59 Identities=14% Similarity=0.016 Sum_probs=39.9
Q ss_pred CeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhC-CCcEEEEecchhH
Q 019743 148 PLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYFIATNATS 207 (336)
Q Consensus 148 ~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~-~~nv~~~~~d~~~ 207 (336)
.++|=.| |+|.++..+++++ .+.+++.++.+++.++.......... -.++.++++|+.+
T Consensus 3 k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 64 (248)
T PRK08251 3 QKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVND 64 (248)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCC
Confidence 3567667 4666777776653 35789999999888776665544332 2358888888864
No 418
>PRK06940 short chain dehydrogenase; Provisional
Probab=47.54 E-value=53 Score=29.56 Aligned_cols=55 Identities=22% Similarity=0.203 Sum_probs=36.4
Q ss_pred EEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 150 VVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 150 vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+|=-|+ |.++..+|+.+ .+.+|+.+|.+++.++.+.+.+...+ .++.++.+|+.+
T Consensus 5 ~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d 60 (275)
T PRK06940 5 VVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG-FDVSTQEVDVSS 60 (275)
T ss_pred EEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEeecCC
Confidence 333354 46888887764 46789999999877766555554333 357788888754
No 419
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=47.52 E-value=47 Score=26.20 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=33.6
Q ss_pred CCeEEEEecccc-HHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNG-LFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG-~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
..+|+|+|-|-= ..+-.|+++ +..++++||++. ++ + +.+++...|+++
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~-------~a---~-~g~~~v~DDitn 62 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK-------TA---P-EGLRFVVDDITN 62 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc-------cC---c-ccceEEEccCCC
Confidence 458999998854 344555555 588999999987 11 1 457888888754
No 420
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=46.72 E-value=73 Score=27.61 Aligned_cols=59 Identities=7% Similarity=0.075 Sum_probs=39.2
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+.++|=.|+ +|.++..+++.. .+.+|++++.++..+..+.......+ .++.++.+|+.+
T Consensus 6 ~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~ 66 (251)
T PRK12826 6 GRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG-GKARARQVDVRD 66 (251)
T ss_pred CCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCC
Confidence 346776664 566676666542 35789999999876665555554433 458888888854
No 421
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=46.61 E-value=53 Score=28.74 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=39.7
Q ss_pred eEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 149 LVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 149 ~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
.+|=.| |||.++..++++. .+.++++++.++...+.........+ .++.++.+|+.+
T Consensus 6 ~vlItG-~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 64 (258)
T PRK12429 6 VALVTG-AASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG-GKAIGVAMDVTD 64 (258)
T ss_pred EEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCC
Confidence 455444 4677888887753 46789999999887776665554433 468888888854
No 422
>PRK11018 hypothetical protein; Provisional
Probab=46.00 E-value=60 Score=23.37 Aligned_cols=41 Identities=12% Similarity=-0.026 Sum_probs=32.4
Q ss_pred HHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeee
Q 019743 248 EAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLV 288 (336)
Q Consensus 248 ~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 288 (336)
+...+-|++|..+.+.++.......+...+.+.|+......
T Consensus 26 kk~l~~l~~G~~L~V~~d~~~a~~di~~~~~~~G~~v~~~~ 66 (78)
T PRK11018 26 LEALPQLKKGEILEVVSDCPQSINNIPLDARNHGYTVLDIQ 66 (78)
T ss_pred HHHHHhCCCCCEEEEEeCCccHHHHHHHHHHHcCCEEEEEE
Confidence 44456789999998888877777889999999999865443
No 423
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=45.85 E-value=1.1e+02 Score=29.73 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=26.8
Q ss_pred CeEEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHH
Q 019743 148 PLVVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCR 187 (336)
Q Consensus 148 ~~vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~ 187 (336)
.+|-=| |.|..+..+|... ...+|+|+|+++..++..+
T Consensus 7 mkI~vI--GlGyvGlpmA~~la~~~~V~g~D~~~~~ve~l~ 45 (425)
T PRK15182 7 VKIAII--GLGYVGLPLAVEFGKSRQVVGFDVNKKRILELK 45 (425)
T ss_pred CeEEEE--CcCcchHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 445445 5566777766653 3478999999999888765
No 424
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=45.48 E-value=86 Score=28.54 Aligned_cols=39 Identities=10% Similarity=0.173 Sum_probs=25.3
Q ss_pred EEEEeccc--cHHHHHHHHhCCCCeEEEEecChHHHHHHHHHH
Q 019743 150 VVDIGSGN--GLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSL 190 (336)
Q Consensus 150 vLDiGcGs--G~~~~~la~~~p~~~v~giDis~~~l~~a~~n~ 190 (336)
|.=||+|. +.++..+++. +.+|+.+|++++.++.+.++.
T Consensus 4 V~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~ 44 (288)
T PRK09260 4 LVVVGAGVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEI 44 (288)
T ss_pred EEEECccHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHH
Confidence 44456652 2233344433 578999999999999887653
No 425
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=44.81 E-value=2.3e+02 Score=26.57 Aligned_cols=41 Identities=20% Similarity=0.273 Sum_probs=28.7
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHH
Q 019743 147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCR 187 (336)
Q Consensus 147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~ 187 (336)
+.+||=+|+| .|.+++.+|+...-.+++++|.++...+.++
T Consensus 185 g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~ 226 (365)
T cd08277 185 GSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAK 226 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 4566656774 4556677787763337999999988877774
No 426
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=44.81 E-value=2.2e+02 Score=26.63 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=28.7
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHH
Q 019743 147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCR 187 (336)
Q Consensus 147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~ 187 (336)
+.+||=.|+| .|.+++.+|+...-.+++++|.+++.++.++
T Consensus 188 g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~ 229 (369)
T cd08301 188 GSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAK 229 (369)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 4566666764 4556667777763337999999998887774
No 427
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=44.23 E-value=2.7e+02 Score=26.08 Aligned_cols=40 Identities=20% Similarity=0.345 Sum_probs=28.6
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCC-eEEEEecChHHHHHHH
Q 019743 147 QPLVVDIGSG-NGLFLLGMARKRKDL-NFLGLEVNGKLVTHCR 187 (336)
Q Consensus 147 ~~~vLDiGcG-sG~~~~~la~~~p~~-~v~giDis~~~l~~a~ 187 (336)
+.+||=+|+| .|..++.+|+.. ++ +++++|.+++.++.++
T Consensus 187 g~~VlV~G~G~vG~~a~~~ak~~-G~~~vi~~~~~~~~~~~~~ 228 (368)
T cd08300 187 GSTVAVFGLGAVGLAVIQGAKAA-GASRIIGIDINPDKFELAK 228 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHH
Confidence 4556666764 455666677776 45 7999999999887764
No 428
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=44.09 E-value=87 Score=27.58 Aligned_cols=58 Identities=9% Similarity=0.052 Sum_probs=37.6
Q ss_pred eEEEEeccccHHHHHHHHhC------CCCeEEEEecChHHHHHHHHHHHHhC-CCcEEEEecchhH
Q 019743 149 LVVDIGSGNGLFLLGMARKR------KDLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYFIATNATS 207 (336)
Q Consensus 149 ~vLDiGcGsG~~~~~la~~~------p~~~v~giDis~~~l~~a~~n~~~~~-~~nv~~~~~d~~~ 207 (336)
.+|=.|+++| ++.++|+++ .+.+|+.++.+++.++.+.+.+.... -.++.++..|+.+
T Consensus 2 ~vlItGas~G-IG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~ 66 (256)
T TIGR01500 2 VCLVTGASRG-FGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGA 66 (256)
T ss_pred EEEEecCCCc-hHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCC
Confidence 3556676654 555544432 47889999999888877766665421 2357888888753
No 429
>PRK07024 short chain dehydrogenase; Provisional
Probab=43.88 E-value=41 Score=29.70 Aligned_cols=56 Identities=11% Similarity=0.011 Sum_probs=36.2
Q ss_pred eEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 149 LVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 149 ~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
++|=.|+ +|.++..+++.. .+.+++.++.+++.++...+..... .++.++.+|+.+
T Consensus 4 ~vlItGa-s~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~ 61 (257)
T PRK07024 4 KVFITGA-SSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKA--ARVSVYAADVRD 61 (257)
T ss_pred EEEEEcC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccC--CeeEEEEcCCCC
Confidence 4555565 555666666542 4679999999988776554433222 268888988854
No 430
>PRK10537 voltage-gated potassium channel; Provisional
Probab=43.77 E-value=2e+02 Score=27.85 Aligned_cols=104 Identities=8% Similarity=0.024 Sum_probs=55.6
Q ss_pred ccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhh-cCCCCeEEEEEeeCCCCC
Q 019743 155 SGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIV-ASYPGKLILVSIQCPNPD 231 (336)
Q Consensus 155 cGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~iv-snpp~~~d~i~~~~~dp~ 231 (336)
||.|.++..+++.. .+..++.+|.+.. + +.. .++..++++|..+. +..- .|-. ..+.+.+..+|..
T Consensus 246 ~G~g~lg~~v~~~L~~~g~~vvVId~d~~--~----~~~---~~g~~vI~GD~td~-e~L~~AgI~-~A~aVI~~t~dD~ 314 (393)
T PRK10537 246 CGHSPLAINTYLGLRQRGQAVTVIVPLGL--E----HRL---PDDADLIPGDSSDS-AVLKKAGAA-RARAILALRDNDA 314 (393)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECchh--h----hhc---cCCCcEEEeCCCCH-HHHHhcCcc-cCCEEEEcCCChH
Confidence 67777777776642 2467888886521 1 111 13466889998653 1111 1111 2233334333321
Q ss_pred CCcchhhhhcchHHHHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcc
Q 019743 232 FNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGK 284 (336)
Q Consensus 232 ~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~ 284 (336)
...++-...+.+.|+.+++......+.. +.+++.|-..
T Consensus 315 -----------~Nl~ivL~ar~l~p~~kIIa~v~~~~~~----~~L~~~GaD~ 352 (393)
T PRK10537 315 -----------DNAFVVLAAKEMSSDVKTVAAVNDSKNL----EKIKRVHPDM 352 (393)
T ss_pred -----------HHHHHHHHHHHhCCCCcEEEEECCHHHH----HHHHhcCCCE
Confidence 1134445567888999999877654433 3445556544
No 431
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=43.66 E-value=42 Score=31.20 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=27.0
Q ss_pred hHHHHHHHHhcCcCCcEEEEEeCcHHHHHHH-HHHHHHc
Q 019743 243 QRSLVEAVSDLLVHDGKVFLQSDIEEVMLRM-KQQFLEY 280 (336)
Q Consensus 243 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-~~~l~~~ 280 (336)
.+.+++.+.++|+|||++.+.+-+ .+-+.+ ++.|.++
T Consensus 219 L~~~L~~~~~~L~~gGrl~VISfH-SLEDRiVK~~f~~~ 256 (305)
T TIGR00006 219 LEEALQFAPNLLAPGGRLSIISFH-SLEDRIVKNFFREL 256 (305)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecC-cHHHHHHHHHHHHh
Confidence 378999999999999999997743 444544 4446543
No 432
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=43.60 E-value=2.6e+02 Score=25.76 Aligned_cols=40 Identities=15% Similarity=0.278 Sum_probs=28.4
Q ss_pred CCeEEEEeccc-cHHHHHHHHhCCCCe-EEEEecChHHHHHHH
Q 019743 147 QPLVVDIGSGN-GLFLLGMARKRKDLN-FLGLEVNGKLVTHCR 187 (336)
Q Consensus 147 ~~~vLDiGcGs-G~~~~~la~~~p~~~-v~giDis~~~l~~a~ 187 (336)
+.++|=.|+|+ |..++.+|+.. +.+ +++++.+++..+.++
T Consensus 163 g~~vlI~g~g~vG~~a~~lak~~-G~~~v~~~~~~~~~~~~~~ 204 (343)
T cd05285 163 GDTVLVFGAGPIGLLTAAVAKAF-GATKVVVTDIDPSRLEFAK 204 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHH
Confidence 34555568765 77888888886 455 899988887776663
No 433
>PLN02702 L-idonate 5-dehydrogenase
Probab=43.45 E-value=2.5e+02 Score=26.14 Aligned_cols=98 Identities=17% Similarity=0.235 Sum_probs=52.6
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEe---cchhHHHHhhhcCCCCeEEE
Q 019743 147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA---TNATSTFRSIVASYPGKLIL 222 (336)
Q Consensus 147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~---~d~~~~~d~ivsnpp~~~d~ 222 (336)
+..+|=+|+| .|..++.+|+...-..++++|.++...+.++ ..+.+.+..+. .++.+.+..+-......+|.
T Consensus 182 g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 257 (364)
T PLN02702 182 ETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAK----QLGADEIVLVSTNIEDVESEVEEIQKAMGGGIDV 257 (364)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH----HhCCCEEEecCcccccHHHHHHHHhhhcCCCCCE
Confidence 3456556764 4667777888764345899998887766554 34544332221 23322222111011223443
Q ss_pred EEeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 223 VSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 223 i~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
++ .... ....+..+.+.|+++|++..
T Consensus 258 vi-d~~g-------------~~~~~~~~~~~l~~~G~~v~ 283 (364)
T PLN02702 258 SF-DCVG-------------FNKTMSTALEATRAGGKVCL 283 (364)
T ss_pred EE-ECCC-------------CHHHHHHHHHHHhcCCEEEE
Confidence 32 2111 02456778889999998775
No 434
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=43.42 E-value=84 Score=21.87 Aligned_cols=42 Identities=10% Similarity=0.012 Sum_probs=33.8
Q ss_pred HHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeee
Q 019743 247 VEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLV 288 (336)
Q Consensus 247 l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 288 (336)
.+.+.+-|++|+.+.+.+++......+.+.+.+.|+......
T Consensus 16 ~kkal~~l~~G~~l~V~~d~~~a~~di~~~~~~~G~~~~~~~ 57 (69)
T cd03420 16 LKKEIDKLQDGEQLEVKASDPGFARDAQAWCKSTGNTLISLE 57 (69)
T ss_pred HHHHHHcCCCCCEEEEEECCccHHHHHHHHHHHcCCEEEEEE
Confidence 455567789999999988887778889999999999876443
No 435
>PRK06914 short chain dehydrogenase; Provisional
Probab=43.30 E-value=1.1e+02 Score=27.25 Aligned_cols=59 Identities=12% Similarity=0.026 Sum_probs=37.7
Q ss_pred CeEEEEeccccHHHHHHHHh--CCCCeEEEEecChHHHHHHHHHHHHhCC-CcEEEEecchhH
Q 019743 148 PLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGI-TNGYFIATNATS 207 (336)
Q Consensus 148 ~~vLDiGcGsG~~~~~la~~--~p~~~v~giDis~~~l~~a~~n~~~~~~-~nv~~~~~d~~~ 207 (336)
..+|=.|+ +|.++..+++. ..+.+|++++.+++.++...+.....+. .++.++.+|+.+
T Consensus 4 k~~lItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d 65 (280)
T PRK06914 4 KIAIVTGA-SSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTD 65 (280)
T ss_pred CEEEEECC-CchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCC
Confidence 35666674 44455555543 2368899999988777665554443332 368888988854
No 436
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=43.05 E-value=1e+02 Score=27.00 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=39.2
Q ss_pred CCeEEEEeccccHHHHHHHHh--CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~--~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+.++|=.|++ |.++..+++. ..+.+++.++.+...++.........+ .++.++..|+.+
T Consensus 11 ~k~vlVtG~s-~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~ 71 (255)
T PRK06113 11 GKCAIITGAG-AGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG-GQAFACRCDITS 71 (255)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCC
Confidence 4678888855 4455655554 236789999988887776655544333 357778888754
No 437
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=42.85 E-value=2.7e+02 Score=26.03 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=29.1
Q ss_pred CCeEEEEeccc-cHHHHHHHHhCCCCeEEEEecChHHHHHHH
Q 019743 147 QPLVVDIGSGN-GLFLLGMARKRKDLNFLGLEVNGKLVTHCR 187 (336)
Q Consensus 147 ~~~vLDiGcGs-G~~~~~la~~~p~~~v~giDis~~~l~~a~ 187 (336)
+..||=.|+|+ |..++.+|+...-..++++|.++...+.++
T Consensus 187 g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~ 228 (365)
T cd08278 187 GSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAK 228 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 45666667753 667777888764336999999988777664
No 438
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=42.85 E-value=1.1e+02 Score=26.42 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=38.8
Q ss_pred CeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 148 PLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 148 ~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
..+|=.|+ +|.++..++++. .+.++++++.+.+....+.......+ .++.++.+|+.+
T Consensus 4 ~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~d~~~ 63 (250)
T TIGR03206 4 KTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG-GNAQAFACDITD 63 (250)
T ss_pred CEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC-CcEEEEEcCCCC
Confidence 45666675 456666666542 35789999999887766665554433 468888888753
No 439
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=42.60 E-value=83 Score=29.07 Aligned_cols=59 Identities=8% Similarity=0.070 Sum_probs=39.8
Q ss_pred cccHHHHHHHHhC---CCCeEEEEecChHHHHHHHHHHHHhC-CCcEEE----EecchhH--HHHhhhc
Q 019743 156 GNGLFLLGMARKR---KDLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYF----IATNATS--TFRSIVA 214 (336)
Q Consensus 156 GsG~~~~~la~~~---p~~~v~giDis~~~l~~a~~n~~~~~-~~nv~~----~~~d~~~--~~d~ivs 214 (336)
|+|.++..|.++. .-.+++.+|.++..+...++.+.... ..++.+ +.+|..+ .++.++.
T Consensus 6 a~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~ 74 (293)
T PF02719_consen 6 AGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFE 74 (293)
T ss_dssp TTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHh
Confidence 6788998888762 22689999999999998888875432 234544 4788865 3566665
No 440
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=42.57 E-value=58 Score=28.76 Aligned_cols=56 Identities=14% Similarity=0.065 Sum_probs=37.8
Q ss_pred eEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 149 LVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 149 ~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
++|=.|.+ |.++..+|+++ .+++|+.++.+++.++.+.+.+... .++.++..|+.+
T Consensus 2 ~vlItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~Dv~d 59 (259)
T PRK08340 2 NVLVTASS-RGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY--GEVYAVKADLSD 59 (259)
T ss_pred eEEEEcCC-cHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEcCCCC
Confidence 35556654 44666666542 3688999999998887776666443 357788888743
No 441
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.38 E-value=40 Score=28.17 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=18.1
Q ss_pred HHHHHHHHhcCcCCcEEEEEe
Q 019743 244 RSLVEAVSDLLVHDGKVFLQS 264 (336)
Q Consensus 244 ~~~l~~~~~~LkpgG~l~~~~ 264 (336)
..+++++++.|||||++-+..
T Consensus 66 ~~alkechr~Lrp~G~LriAv 86 (185)
T COG4627 66 TSALKECHRFLRPGGKLRIAV 86 (185)
T ss_pred HHHHHHHHHHhCcCcEEEEEc
Confidence 378899999999999998844
No 442
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=42.31 E-value=2.7e+02 Score=25.47 Aligned_cols=95 Identities=19% Similarity=0.241 Sum_probs=52.2
Q ss_pred CCeEEEEeccc-cHHHHHHHHhCCCCe-EEEEecChHHHHHHHHHHHHhCCCcEEEEecchhHHHHhhhcCCCCeEEEEE
Q 019743 147 QPLVVDIGSGN-GLFLLGMARKRKDLN-FLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVS 224 (336)
Q Consensus 147 ~~~vLDiGcGs-G~~~~~la~~~p~~~-v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~~~d~ivsnpp~~~d~i~ 224 (336)
+.+||-.|+|+ |..++.+|+.. +.+ +++++-++...+.++ ..+...+--.+......+.... +...+|.++
T Consensus 160 ~~~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~~~~~~~~l~----~~g~~~~~~~~~~~~~~~~~~~--~~~~~d~vl 232 (343)
T cd08236 160 GDTVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDIDDEKLAVAR----ELGADDTINPKEEDVEKVRELT--EGRGADLVI 232 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHH----HcCCCEEecCccccHHHHHHHh--CCCCCCEEE
Confidence 45777778765 77778888876 455 999988887766553 2343221111111111111111 112244332
Q ss_pred eeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 225 IQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 225 ~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
.... ....+..+.+.|+++|++..
T Consensus 233 -d~~g-------------~~~~~~~~~~~l~~~G~~v~ 256 (343)
T cd08236 233 -EAAG-------------SPATIEQALALARPGGKVVL 256 (343)
T ss_pred -ECCC-------------CHHHHHHHHHHhhcCCEEEE
Confidence 2111 12466777889999999876
No 443
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=42.22 E-value=44 Score=30.32 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=25.8
Q ss_pred eEEEEecc--ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHH
Q 019743 149 LVVDIGSG--NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDS 189 (336)
Q Consensus 149 ~vLDiGcG--sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n 189 (336)
+|.=||+| .+.++..+++. +.+|+++|++++.++.++++
T Consensus 5 kI~VIG~G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~ 45 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLAT 45 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHH
Confidence 35556666 23444555544 56899999999999776643
No 444
>PRK08643 acetoin reductase; Validated
Probab=41.84 E-value=67 Score=28.17 Aligned_cols=57 Identities=11% Similarity=0.190 Sum_probs=38.2
Q ss_pred eEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 149 LVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 149 ~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
++|=.|+ +|.++..+++.+ .+.+++.++.+++.++.....+...+ .++.++.+|+.+
T Consensus 4 ~~lItGa-s~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 62 (256)
T PRK08643 4 VALVTGA-GQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG-GKAIAVKADVSD 62 (256)
T ss_pred EEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCC
Confidence 4555564 445666666542 46789999999887777766665443 457788888854
No 445
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=41.80 E-value=85 Score=21.46 Aligned_cols=40 Identities=13% Similarity=-0.038 Sum_probs=31.2
Q ss_pred HHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeee
Q 019743 249 AVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLV 288 (336)
Q Consensus 249 ~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 288 (336)
...+-|++|..+.+.+++......+.+.+.+.|+......
T Consensus 18 ~~l~~l~~g~~l~v~~d~~~~~~~i~~~~~~~g~~~~~~~ 57 (69)
T cd00291 18 KALEKLKSGEVLEVLLDDPGAVEDIPAWAKETGHEVLEVE 57 (69)
T ss_pred HHHhcCCCCCEEEEEecCCcHHHHHHHHHHHcCCEEEEEE
Confidence 3445588999999988877767888999999999865443
No 446
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=41.61 E-value=1.8e+02 Score=27.21 Aligned_cols=95 Identities=13% Similarity=0.084 Sum_probs=55.9
Q ss_pred CCeEEEEec--cccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCc-EEEEecchhHHHHhhhcCCCCeEEEE
Q 019743 147 QPLVVDIGS--GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN-GYFIATNATSTFRSIVASYPGKLILV 223 (336)
Q Consensus 147 ~~~vLDiGc--GsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~n-v~~~~~d~~~~~d~ivsnpp~~~d~i 223 (336)
+..||=.|. |-|.+++.||+.. ..+++++--+++-.+.+ ++.|.+. +.+...|+.+....+. ....+|.+
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~-G~~~v~~~~s~~k~~~~----~~lGAd~vi~y~~~~~~~~v~~~t--~g~gvDvv 215 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKAL-GATVVAVVSSSEKLELL----KELGADHVINYREEDFVEQVRELT--GGKGVDVV 215 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHc-CCcEEEEecCHHHHHHH----HhcCCCEEEcCCcccHHHHHHHHc--CCCCceEE
Confidence 567777774 5678999999997 33666776676555543 3445443 3334455554433322 12234543
Q ss_pred EeeCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEEE
Q 019743 224 SIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 263 (336)
Q Consensus 224 ~~~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~~ 263 (336)
+-. .-...+....+.|+++|+++..
T Consensus 216 ~D~---------------vG~~~~~~~l~~l~~~G~lv~i 240 (326)
T COG0604 216 LDT---------------VGGDTFAASLAALAPGGRLVSI 240 (326)
T ss_pred EEC---------------CCHHHHHHHHHHhccCCEEEEE
Confidence 321 1135666777899999998883
No 447
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=41.56 E-value=1.5e+02 Score=27.16 Aligned_cols=34 Identities=9% Similarity=0.228 Sum_probs=25.5
Q ss_pred ec-cccHHHHHHHHhCCCCeEEEEecChHHHHHHHH
Q 019743 154 GS-GNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRD 188 (336)
Q Consensus 154 Gc-GsG~~~~~la~~~p~~~v~giDis~~~l~~a~~ 188 (336)
|+ +.|.+++.+|+.. ++++++++.++...+.+++
T Consensus 152 g~g~vG~~a~q~a~~~-G~~vi~~~~~~~~~~~~~~ 186 (324)
T cd08291 152 AASALGRMLVRLCKAD-GIKVINIVRRKEQVDLLKK 186 (324)
T ss_pred CccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH
Confidence 44 4667777788775 6789999999887777654
No 448
>PRK06194 hypothetical protein; Provisional
Probab=41.55 E-value=74 Score=28.49 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=37.6
Q ss_pred CeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 148 PLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 148 ~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
.++|=.|. +|.++..++++. .+++|+.+|.+++.++...+.....+ .++.++.+|+.+
T Consensus 7 k~vlVtGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~d 66 (287)
T PRK06194 7 KVAVITGA-ASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG-AEVLGVRTDVSD 66 (287)
T ss_pred CEEEEeCC-ccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC-CeEEEEECCCCC
Confidence 45665564 455666666542 36789999999877766555544333 357888888854
No 449
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=41.47 E-value=1e+02 Score=21.46 Aligned_cols=42 Identities=12% Similarity=-0.028 Sum_probs=33.5
Q ss_pred HHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeee
Q 019743 247 VEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLV 288 (336)
Q Consensus 247 l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 288 (336)
.+...+-|++|..+.+.++.......+.+.+.+.|+......
T Consensus 16 ~kkal~~l~~G~~l~V~~d~~~s~~ni~~~~~~~g~~v~~~~ 57 (69)
T cd03422 16 TLEALPSLKPGEILEVISDCPQSINNIPIDARNHGYKVLAIE 57 (69)
T ss_pred HHHHHHcCCCCCEEEEEecCchHHHHHHHHHHHcCCEEEEEE
Confidence 355567789999999988887778889999999999875443
No 450
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=41.44 E-value=48 Score=30.68 Aligned_cols=37 Identities=30% Similarity=0.282 Sum_probs=26.9
Q ss_pred hHHHHHHHHhcCcCCcEEEEEeCcHHHHHHH-HHHHHHc
Q 019743 243 QRSLVEAVSDLLVHDGKVFLQSDIEEVMLRM-KQQFLEY 280 (336)
Q Consensus 243 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-~~~l~~~ 280 (336)
.+.++..+..+|+|||++.+.+-+ ..-+.+ ++.|.++
T Consensus 215 L~~~L~~~~~~L~~gGrl~visfH-SlEDriVK~~f~~~ 252 (296)
T PRK00050 215 LERALEAALDLLKPGGRLAVISFH-SLEDRIVKRFFREL 252 (296)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecC-cHHHHHHHHHHHHh
Confidence 378999999999999999997743 444444 4446543
No 451
>PRK06181 short chain dehydrogenase; Provisional
Probab=40.82 E-value=74 Score=28.04 Aligned_cols=57 Identities=14% Similarity=0.157 Sum_probs=37.4
Q ss_pred eEEEEeccccHHHHHHHHh--CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 149 LVVDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 149 ~vLDiGcGsG~~~~~la~~--~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
.+|=.| |+|.++..+++. ..+.+|++++.++...+...+.....+ .++.++.+|+.+
T Consensus 3 ~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~ 61 (263)
T PRK06181 3 VVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG-GEALVVPTDVSD 61 (263)
T ss_pred EEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCC
Confidence 355556 445566666554 246799999999877766655554433 468888888754
No 452
>PRK07062 short chain dehydrogenase; Provisional
Probab=40.58 E-value=1.3e+02 Score=26.60 Aligned_cols=60 Identities=8% Similarity=-0.048 Sum_probs=39.9
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhC-CCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~-~~nv~~~~~d~~~ 207 (336)
+..+|=.|+++| ++.++++.+ .+++|+.++.+++.++.+.+...... -.++.++..|+.+
T Consensus 8 ~k~~lItGas~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 70 (265)
T PRK07062 8 GRVAVVTGGSSG-IGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLD 70 (265)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCC
Confidence 456777886554 555555542 37889999999888777666554432 1357778888754
No 453
>PRK07774 short chain dehydrogenase; Provisional
Probab=40.47 E-value=1.3e+02 Score=26.20 Aligned_cols=59 Identities=8% Similarity=0.135 Sum_probs=38.2
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+.++|=.| |+|.++..+++.+ .+.+++.++.++.........+...+ .++.++..|+.+
T Consensus 6 ~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 66 (250)
T PRK07774 6 DKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG-GTAIAVQVDVSD 66 (250)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCC
Confidence 34577667 5566777776642 36789999998876655554443322 356778888754
No 454
>PRK09135 pteridine reductase; Provisional
Probab=40.37 E-value=1.2e+02 Score=26.15 Aligned_cols=60 Identities=7% Similarity=-0.081 Sum_probs=37.5
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecC-hHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVN-GKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis-~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
...+|=.|+ +|.++..+++.. .+.++++++.+ +...+.....+......++.++++|+.+
T Consensus 6 ~~~vlItGa-~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 68 (249)
T PRK09135 6 AKVALITGG-ARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLD 68 (249)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCC
Confidence 357888895 566777766653 46899999975 3333433333333323457888888753
No 455
>PRK07890 short chain dehydrogenase; Provisional
Probab=39.70 E-value=81 Score=27.59 Aligned_cols=58 Identities=12% Similarity=0.072 Sum_probs=38.5
Q ss_pred CeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 148 PLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 148 ~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
.++|=.|+ +|.++..+|+.+ .+++|+.++.++..++.........+ .++.++..|+.+
T Consensus 6 k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 65 (258)
T PRK07890 6 KVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG-RRALAVPTDITD 65 (258)
T ss_pred CEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC-CceEEEecCCCC
Confidence 45676665 445666665542 36799999999887766665554433 457888888753
No 456
>PRK05875 short chain dehydrogenase; Provisional
Probab=39.29 E-value=1.3e+02 Score=26.75 Aligned_cols=60 Identities=10% Similarity=0.051 Sum_probs=38.6
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhC-CCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~-~~nv~~~~~d~~~ 207 (336)
+.++|=.|++ |.++..+++.. .+.+|++++.+++..+...+.....+ ..++.++.+|+.+
T Consensus 7 ~k~vlItGas-g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~ 69 (276)
T PRK05875 7 DRTYLVTGGG-SGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTD 69 (276)
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCC
Confidence 4567877854 44666666542 36789999998776655544443322 2468888888754
No 457
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=38.86 E-value=2.6e+02 Score=26.75 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=31.8
Q ss_pred CCeEEEEe-cc-ccHHHHHHHHhCC--CCeEEEEecChHHHHHHHHH
Q 019743 147 QPLVVDIG-SG-NGLFLLGMARKRK--DLNFLGLEVNGKLVTHCRDS 189 (336)
Q Consensus 147 ~~~vLDiG-cG-sG~~~~~la~~~p--~~~v~giDis~~~l~~a~~n 189 (336)
+.+|+=+| +| .|.+++.+|+..- ..+++++|.+++.++.|++.
T Consensus 176 g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 176 GGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 45676676 44 7778888888741 23799999999999988764
No 458
>PRK08862 short chain dehydrogenase; Provisional
Probab=38.68 E-value=1.3e+02 Score=26.21 Aligned_cols=58 Identities=7% Similarity=0.018 Sum_probs=39.2
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchh
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNAT 206 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~ 206 (336)
+..+|=.|+++|. +.++|+++ .+.+++.++.+++.++.+.+.+...+ ..+..+..|..
T Consensus 5 ~k~~lVtGas~GI-G~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~-~~~~~~~~D~~ 64 (227)
T PRK08862 5 SSIILITSAGSVL-GRTISCHFARLGATLILCDQDQSALKDTYEQCSALT-DNVYSFQLKDF 64 (227)
T ss_pred CeEEEEECCccHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-CCeEEEEccCC
Confidence 4567878888864 44444432 47899999999998887776665544 24566666654
No 459
>PRK10458 DNA cytosine methylase; Provisional
Probab=38.60 E-value=63 Score=31.98 Aligned_cols=43 Identities=16% Similarity=0.089 Sum_probs=34.7
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSL 190 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~ 190 (336)
..+++|+-||.|.+.+.+-... .-.+.++|+++.+.+.-+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG-~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIG-GQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcC-CEEEEEEechHHHHHHHHHHc
Confidence 4689999999999998886653 235789999999888877764
No 460
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=38.25 E-value=45 Score=29.12 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=31.0
Q ss_pred CCCCCcEEEEEcCCccc----------chHHHHHHHHh--ccceEEEehh
Q 019743 3 KLDEKPYAAIIGGGNLC----------NKAAALHFLAS--RCDGLIFVGL 40 (336)
Q Consensus 3 ~~~~~p~~~v~gG~k~~----------d~i~~~~~~l~--~~D~~l~~G~ 40 (336)
+-|.||+-.|||-+|.- +.|....++.+ |++.+|+.|-
T Consensus 53 ~lP~r~vgvVLGtsky~~~g~~N~yy~~Ri~aA~~ly~~gKV~~LLlSGD 102 (235)
T COG2949 53 DLPARQVGVVLGTSKYLAKGPPNRYYTYRIDAAIALYKAGKVNYLLLSGD 102 (235)
T ss_pred hCCccceEEEEeccccccCCCccHhHHHHHHHHHHHHhcCCeeEEEEecC
Confidence 46899999999987764 45888888886 8999999773
No 461
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=38.04 E-value=3.7e+02 Score=25.71 Aligned_cols=104 Identities=11% Similarity=0.018 Sum_probs=51.9
Q ss_pred CeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEe---cchhHHHHhhhcCCCCeEEEE
Q 019743 148 PLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA---TNATSTFRSIVASYPGKLILV 223 (336)
Q Consensus 148 ~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~---~d~~~~~d~ivsnpp~~~d~i 223 (336)
.+||=.|+| .|..++.+|+..--..++.+|.+++.++.|++ .|.. .+.. .+..+.+.... ....+|.+
T Consensus 187 ~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~----~Ga~--~v~~~~~~~~~~~v~~~~--~~~g~Dvv 258 (393)
T TIGR02819 187 STVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS----FGCE--TVDLSKDATLPEQIEQIL--GEPEVDCA 258 (393)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH----cCCe--EEecCCcccHHHHHHHHc--CCCCCcEE
Confidence 334336775 45566667777633346677888888877754 3543 2221 12222222222 11123433
Q ss_pred EeeCCCC---CCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 224 SIQCPNP---DFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 224 ~~~~~dp---~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
+-....+ +..+. ...-....++++.+.+++||++.+
T Consensus 259 id~~G~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~G~i~~ 297 (393)
T TIGR02819 259 VDCVGFEARGHGHDG---KKEAPATVLNSLMEVTRVGGAIGI 297 (393)
T ss_pred EECCCCccccccccc---cccchHHHHHHHHHHhhCCCEEEE
Confidence 2211111 10000 000112467888899999999988
No 462
>PRK07035 short chain dehydrogenase; Provisional
Probab=37.98 E-value=96 Score=27.07 Aligned_cols=59 Identities=10% Similarity=0.079 Sum_probs=38.2
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+.++|=.|+++| ++.++++.. .+.+|++++.+++.++...+.....+ .++.+++.|+.+
T Consensus 8 ~k~vlItGas~g-IG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 68 (252)
T PRK07035 8 GKIALVTGASRG-IGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG-GKAEALACHIGE 68 (252)
T ss_pred CCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEcCCCC
Confidence 345666776655 455554432 36799999999887776666655433 357778887743
No 463
>PRK07063 short chain dehydrogenase; Provisional
Probab=37.91 E-value=1.5e+02 Score=25.99 Aligned_cols=60 Identities=8% Similarity=0.067 Sum_probs=40.2
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHh-CCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLS-GITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~-~~~nv~~~~~d~~~ 207 (336)
+.++|=.|+++ .++..+++.+ .+++|+.++.+++.++...+.+... .-.++.++.+|+.+
T Consensus 7 ~k~vlVtGas~-gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 69 (260)
T PRK07063 7 GKVALVTGAAQ-GIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTD 69 (260)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCC
Confidence 45678778754 4555555542 3688999999988887776666542 12357888888753
No 464
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.77 E-value=84 Score=29.48 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=32.0
Q ss_pred CCeEEEEeccccHHH-HHHHHhCCCCeEEEEecChHHHHHHHH
Q 019743 147 QPLVVDIGSGNGLFL-LGMARKRKDLNFLGLEVNGKLVTHCRD 188 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~-~~la~~~p~~~v~giDis~~~l~~a~~ 188 (336)
+..+.=+|+|+=.++ +.-|+..-..+++|||++++-.+.|++
T Consensus 193 GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 193 GSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred CCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 567888888854444 444666667899999999999988864
No 465
>PRK07478 short chain dehydrogenase; Provisional
Probab=37.67 E-value=95 Score=27.19 Aligned_cols=58 Identities=7% Similarity=0.007 Sum_probs=38.5
Q ss_pred CeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 148 PLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 148 ~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
.++|=.|+++ .++..+++.+ .+.+++.++.+++.++.+.+.+...+ .++.++.+|+.+
T Consensus 7 k~~lItGas~-giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 66 (254)
T PRK07478 7 KVAIITGASS-GIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG-GEAVALAGDVRD 66 (254)
T ss_pred CEEEEeCCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCC
Confidence 4566566654 4555555542 36789999999888777766665444 357788888753
No 466
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=37.35 E-value=1.3e+02 Score=26.18 Aligned_cols=58 Identities=14% Similarity=0.055 Sum_probs=38.5
Q ss_pred CeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 148 PLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 148 ~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
.++|=.| |+|.++..+++.. .+.++++++.+++..+.+.+.+...+ .++.++++|+.+
T Consensus 8 ~~vlItG-asg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 67 (262)
T PRK13394 8 KTAVVTG-AASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAG-GKAIGVAMDVTN 67 (262)
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcC-ceEEEEECCCCC
Confidence 4566444 4556666666542 36789999999987777666655443 357788888754
No 467
>PRK05599 hypothetical protein; Provisional
Probab=37.24 E-value=1.5e+02 Score=25.88 Aligned_cols=57 Identities=11% Similarity=0.065 Sum_probs=38.9
Q ss_pred EEEEeccccHHHHHHHHhC-CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 150 VVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 150 vLDiGcGsG~~~~~la~~~-p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+|=.|+++| ++.++|+.+ .+.+++.++.+++.++...+.++..+...+.++.+|+.+
T Consensus 3 vlItGas~G-IG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d 60 (246)
T PRK05599 3 ILILGGTSD-IAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQD 60 (246)
T ss_pred EEEEeCccH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCC
Confidence 555677655 556655542 368899999998888877776665553457788888754
No 468
>PRK05650 short chain dehydrogenase; Provisional
Probab=37.10 E-value=93 Score=27.61 Aligned_cols=57 Identities=14% Similarity=0.143 Sum_probs=37.6
Q ss_pred eEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 149 LVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 149 ~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
++|=.|+ +|.++..+++.. .+.+|+.++.+.+.++.+.......+ .++.++.+|+.+
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~ 60 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG-GDGFYQRCDVRD 60 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEEccCCC
Confidence 3555565 555666665542 36789999999887776665554433 457888888854
No 469
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=36.86 E-value=1.3e+02 Score=25.14 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=15.5
Q ss_pred HHHHHHHHhcCcCCcEEEEEeCc
Q 019743 244 RSLVEAVSDLLVHDGKVFLQSDI 266 (336)
Q Consensus 244 ~~~l~~~~~~LkpgG~l~~~~~~ 266 (336)
..+++.+++.|.|||+++++.-.
T Consensus 66 ~~l~~~~~~~l~pg~~lfVeY~~ 88 (170)
T PF06557_consen 66 DELYKLFSRYLEPGGRLFVEYVE 88 (170)
T ss_dssp HHHHHHHHTT----SEEEEE-TT
T ss_pred HHHHHHHHHHhhhcCeEEEEEec
Confidence 58899999999999999997643
No 470
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=36.82 E-value=12 Score=28.07 Aligned_cols=14 Identities=36% Similarity=0.555 Sum_probs=10.8
Q ss_pred EEEEeccccHHHHH
Q 019743 150 VVDIGSGNGLFLLG 163 (336)
Q Consensus 150 vLDiGcGsG~~~~~ 163 (336)
-+|||||.|...-+
T Consensus 6 NIDIGcG~GNTmda 19 (124)
T PF07101_consen 6 NIDIGCGAGNTMDA 19 (124)
T ss_pred ccccccCCCcchhh
Confidence 47999999976443
No 471
>PLN02780 ketoreductase/ oxidoreductase
Probab=36.81 E-value=1.4e+02 Score=27.68 Aligned_cols=59 Identities=20% Similarity=0.168 Sum_probs=38.4
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhC-CCcEEEEecchh
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYFIATNAT 206 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~-~~nv~~~~~d~~ 206 (336)
+..+|=.|+++| ++.++|++. .+.+++.++.+++.++...+.++... -.++..+..|..
T Consensus 53 g~~~lITGAs~G-IG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~ 114 (320)
T PLN02780 53 GSWALVTGPTDG-IGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFS 114 (320)
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECC
Confidence 457888887655 455555432 36789999999998887776665432 124566666653
No 472
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=36.77 E-value=94 Score=21.43 Aligned_cols=43 Identities=9% Similarity=-0.072 Sum_probs=33.2
Q ss_pred HHHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeee
Q 019743 246 LVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLV 288 (336)
Q Consensus 246 ~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 288 (336)
.+....+-|.+|..+.+.+++....+.+...+...|+......
T Consensus 16 ~~~~~l~~l~~G~~l~v~~d~~~~~~di~~~~~~~g~~~~~~~ 58 (70)
T PF01206_consen 16 KAKKALKELPPGEVLEVLVDDPAAVEDIPRWCEENGYEVVEVE 58 (70)
T ss_dssp HHHHHHHTSGTT-EEEEEESSTTHHHHHHHHHHHHTEEEEEEE
T ss_pred HHHHHHHhcCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEE
Confidence 3455566788999998988888878899999999999765543
No 473
>PRK05866 short chain dehydrogenase; Provisional
Probab=36.72 E-value=1.6e+02 Score=26.81 Aligned_cols=59 Identities=8% Similarity=0.128 Sum_probs=39.3
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+.++|=.|+++ .++..+|+.. .+.+|+.++.+++.++...+.....+ ..+.++.+|+.+
T Consensus 40 ~k~vlItGasg-gIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~-~~~~~~~~Dl~d 100 (293)
T PRK05866 40 GKRILLTGASS-GIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAG-GDAMAVPCDLSD 100 (293)
T ss_pred CCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEEccCCC
Confidence 35677778654 4555555442 36899999999887776666554433 347788888754
No 474
>PRK05876 short chain dehydrogenase; Provisional
Probab=36.64 E-value=1.5e+02 Score=26.51 Aligned_cols=59 Identities=12% Similarity=0.066 Sum_probs=38.6
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+.++|=.|+++| ++..+|+.. .+.+++.++.+++.++.+.+.+...+ .++.++..|+.+
T Consensus 6 ~k~vlVTGas~g-IG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~-~~~~~~~~Dv~d 66 (275)
T PRK05876 6 GRGAVITGGASG-IGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG-FDVHGVMCDVRH 66 (275)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEeCCCCC
Confidence 346776777554 555555542 36789999999887776655554333 357888888753
No 475
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.50 E-value=79 Score=27.43 Aligned_cols=57 Identities=12% Similarity=0.175 Sum_probs=36.4
Q ss_pred CeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 148 PLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 148 ~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
.++|=.|+. |.++..+++.. .+.+|++++.++..++........ + .++.++.+|+.+
T Consensus 6 ~~vlItGas-g~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~D~~~ 64 (251)
T PRK07231 6 KVAIVTGAS-SGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-G-GRAIAVAADVSD 64 (251)
T ss_pred cEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C-CeEEEEECCCCC
Confidence 455555554 45556555542 367899999998776665554432 2 357888888764
No 476
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=36.31 E-value=1.5e+02 Score=23.75 Aligned_cols=56 Identities=14% Similarity=0.078 Sum_probs=36.3
Q ss_pred EEEEeccccHHHHHHHHhC---CCCeEEEEecC--hHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 150 VVDIGSGNGLFLLGMARKR---KDLNFLGLEVN--GKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 150 vLDiGcGsG~~~~~la~~~---p~~~v~giDis--~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+|=.|+++ .++..+++.+ ...+++.+..+ .+..+.....+...+ .++.+++.|+.+
T Consensus 3 ~lItGa~~-giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~ 63 (167)
T PF00106_consen 3 VLITGASS-GIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSD 63 (167)
T ss_dssp EEEETTTS-HHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTS
T ss_pred EEEECCCC-HHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-cccccccccccc
Confidence 44456554 4555555542 35688888888 566666656666555 789999999753
No 477
>PRK07832 short chain dehydrogenase; Provisional
Probab=36.14 E-value=95 Score=27.65 Aligned_cols=55 Identities=9% Similarity=-0.036 Sum_probs=33.1
Q ss_pred EEEeccccHHHHHHHHh--CCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchh
Q 019743 151 VDIGSGNGLFLLGMARK--RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNAT 206 (336)
Q Consensus 151 LDiGcGsG~~~~~la~~--~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~ 206 (336)
|=.|. +|.++..+++. ..+.+++.++.+++.++.+.+.+...+...+.++.+|+.
T Consensus 4 lItGa-s~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 60 (272)
T PRK07832 4 FVTGA-ASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDIS 60 (272)
T ss_pred EEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCC
Confidence 33454 34555555543 236789999999887776666555444333455677764
No 478
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=36.07 E-value=2.6e+02 Score=26.21 Aligned_cols=36 Identities=11% Similarity=0.061 Sum_probs=24.7
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHH
Q 019743 147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLV 183 (336)
Q Consensus 147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l 183 (336)
+.+||=.|+| -|.+++.+|+.. +.++++++.+++..
T Consensus 184 g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~ 220 (360)
T PLN02586 184 GKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKE 220 (360)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchh
Confidence 3455558875 566667778776 67888888876543
No 479
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=35.77 E-value=2.5e+02 Score=26.63 Aligned_cols=35 Identities=11% Similarity=0.057 Sum_probs=24.5
Q ss_pred CCeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHH
Q 019743 147 QPLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKL 182 (336)
Q Consensus 147 ~~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~ 182 (336)
+.+|+=.|+| .|.+++.+|+.. ++++++++.+++.
T Consensus 179 g~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~ 214 (375)
T PLN02178 179 GKRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRSSEK 214 (375)
T ss_pred CCEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCChHH
Confidence 4556656775 566667778776 6789999987654
No 480
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=35.74 E-value=46 Score=30.98 Aligned_cols=37 Identities=32% Similarity=0.300 Sum_probs=27.4
Q ss_pred hHHHHHHHHhcCcCCcEEEEEeCcHHHHHH-HHHHHHHc
Q 019743 243 QRSLVEAVSDLLVHDGKVFLQSDIEEVMLR-MKQQFLEY 280 (336)
Q Consensus 243 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~-~~~~l~~~ 280 (336)
.+.++..+..+|+|||++.+.+-. ..-+. +++.|.++
T Consensus 220 L~~~L~~a~~~L~~gGrl~VISFH-SLEDRiVK~~f~~~ 257 (310)
T PF01795_consen 220 LERGLEAAPDLLKPGGRLVVISFH-SLEDRIVKQFFREL 257 (310)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEESS-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcCCcEEEEEEec-chhhHHHHHHHHHh
Confidence 378899999999999999997754 44554 44555544
No 481
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=35.50 E-value=96 Score=27.63 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=37.8
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+..+|=.|.++| ++..+++.. .+.+|+.++.+++..+...+.....+ .++.++++|+.+
T Consensus 10 ~k~vlVtGas~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 70 (278)
T PRK08277 10 GKVAVITGGGGV-LGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAG-GEALAVKADVLD 70 (278)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCC
Confidence 345666666544 555555442 46789999999877766655554433 357888888753
No 482
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=35.34 E-value=2.5e+02 Score=25.98 Aligned_cols=57 Identities=14% Similarity=0.161 Sum_probs=34.7
Q ss_pred cccHHHHHHHHhC---CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchh-H--HHHhhhcCCCC
Q 019743 156 GNGLFLLGMARKR---KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNAT-S--TFRSIVASYPG 218 (336)
Q Consensus 156 GsG~~~~~la~~~---p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~-~--~~d~ivsnpp~ 218 (336)
|+|.++..+++.. .+.+|+++|.+...... ..+...+.++.+|+. + .++.++..++.
T Consensus 9 atGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~------~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ 71 (347)
T PRK11908 9 VNGFIGHHLSKRILETTDWEVYGMDMQTDRLGD------LVNHPRMHFFEGDITINKEWIEYHVKKCDV 71 (347)
T ss_pred CCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHH------hccCCCeEEEeCCCCCCHHHHHHHHcCCCE
Confidence 3688888887763 34789999987643221 112245889999985 2 34444543433
No 483
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=35.29 E-value=49 Score=31.82 Aligned_cols=61 Identities=18% Similarity=0.108 Sum_probs=43.8
Q ss_pred CCeEEEEeccccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHH-------hCC--CcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQL-------SGI--TNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~-------~~~--~nv~~~~~d~~~ 207 (336)
.....|+|.|-|.....+|.......=+|+++....-+.|..+... .|. ..+..++++...
T Consensus 193 ~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~ 262 (419)
T KOG3924|consen 193 ADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLD 262 (419)
T ss_pred CCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCC
Confidence 5678999999999988888776556677999987777777665432 122 237778888754
No 484
>PRK08303 short chain dehydrogenase; Provisional
Probab=34.73 E-value=1.4e+02 Score=27.43 Aligned_cols=59 Identities=10% Similarity=0.109 Sum_probs=37.0
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecCh----------HHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNG----------KLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~----------~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+.++|=.|+++| ++.++|+.+ .+++|+.++.+. +.++.+.+.+...+ .++.++++|+.+
T Consensus 8 ~k~~lITGgs~G-IG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~Dv~~ 78 (305)
T PRK08303 8 GKVALVAGATRG-AGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAG-GRGIAVQVDHLV 78 (305)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcC-CceEEEEcCCCC
Confidence 467888897766 566665543 478899998873 33444444443333 346778888753
No 485
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=34.65 E-value=1.5e+02 Score=28.16 Aligned_cols=63 Identities=14% Similarity=0.159 Sum_probs=44.6
Q ss_pred HHHHHHHhCCCCeEE----EEecChHHHHHHHHHHHHhCCCcEEEEecchhH--HHHhhhcCCCCeEEE
Q 019743 160 FLLGMARKRKDLNFL----GLEVNGKLVTHCRDSLQLSGITNGYFIATNATS--TFRSIVASYPGKLIL 222 (336)
Q Consensus 160 ~~~~la~~~p~~~v~----giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~--~~d~ivsnpp~~~d~ 222 (336)
=++.+|+++|+.+|+ |.|-...+.+.+-..+++.+++|+.++...-.- .++.++++|...+|.
T Consensus 120 dAl~iA~~nP~k~vVF~avGFETTaP~~A~~i~~A~~~~~~Nfsvl~~hkl~PPa~~~ll~~~~~~idg 188 (364)
T PRK15062 120 DALKIARENPDKEVVFFAIGFETTAPATAATLLQAKAEGLKNFSVLSSHKLVPPAMRALLEDPELRIDG 188 (364)
T ss_pred HHHHHHHHCCCCeEEEEecCchhccHHHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHcCCCCCccE
Confidence 457788899887754 677777788888788888899999888765432 345566666544443
No 486
>PRK08267 short chain dehydrogenase; Provisional
Probab=34.60 E-value=80 Score=27.80 Aligned_cols=55 Identities=13% Similarity=0.001 Sum_probs=36.0
Q ss_pred eEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 149 LVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 149 ~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
++|=.|++ |.++..+++.. .+.+|+.++.+++.++...+... -.++.++++|+.+
T Consensus 3 ~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~D~~~ 59 (260)
T PRK08267 3 SIFITGAA-SGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG---AGNAWTGALDVTD 59 (260)
T ss_pred EEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---CCceEEEEecCCC
Confidence 35566654 45666665542 36789999999887766644332 2468888988864
No 487
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=34.51 E-value=1.3e+02 Score=20.87 Aligned_cols=42 Identities=5% Similarity=-0.040 Sum_probs=33.0
Q ss_pred HHHHHhcCcCCcEEEEEeCcHHHHHHHHHHHHHcCCcceeee
Q 019743 247 VEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLV 288 (336)
Q Consensus 247 l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 288 (336)
++...+-|.+|+.+.+.++.....+.+.+.+.+.|+......
T Consensus 16 ~k~~l~~l~~G~~l~V~~dd~~s~~di~~~~~~~g~~~~~~~ 57 (69)
T cd03423 16 LHKKVRKMKPGDTLLVLATDPSTTRDIPKFCTFLGHELLAQE 57 (69)
T ss_pred HHHHHHcCCCCCEEEEEeCCCchHHHHHHHHHHcCCEEEEEE
Confidence 345556788999999888877777889999999999876443
No 488
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=34.31 E-value=87 Score=30.22 Aligned_cols=54 Identities=11% Similarity=0.018 Sum_probs=36.8
Q ss_pred CeEEEEeccccHHHHHHHH---hCCCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 148 PLVVDIGSGNGLFLLGMAR---KRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 148 ~~vLDiGcGsG~~~~~la~---~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
.+||=|||| .++...|. +..+.+|+..|.|.+.++.+..+.. .+++.++.|+.+
T Consensus 2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~----~~v~~~~vD~~d 58 (389)
T COG1748 2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG----GKVEALQVDAAD 58 (389)
T ss_pred CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc----ccceeEEecccC
Confidence 358889995 44443333 2335899999999988877765432 367888888764
No 489
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=34.29 E-value=3.7e+02 Score=24.64 Aligned_cols=95 Identities=15% Similarity=0.136 Sum_probs=49.2
Q ss_pred CeEEEEecc-ccHHHHHHHHhCCCCeEEEEecChHHHHHHHHHHHHhCCCcE-EEEecchhHHHHhhhcCCCCeEEEEEe
Q 019743 148 PLVVDIGSG-NGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNG-YFIATNATSTFRSIVASYPGKLILVSI 225 (336)
Q Consensus 148 ~~vLDiGcG-sG~~~~~la~~~p~~~v~giDis~~~l~~a~~n~~~~~~~nv-~~~~~d~~~~~d~ivsnpp~~~d~i~~ 225 (336)
.++|=.|+| .|..++.+|+.....++++++.++.....++ ..+.+.+ .....+....+.... +...+|.++
T Consensus 168 ~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~----~~g~~~~v~~~~~~~~~~i~~~~--~~~~~d~vl- 240 (345)
T cd08286 168 DTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAK----KLGATHTVNSAKGDAIEQVLELT--DGRGVDVVI- 240 (345)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HhCCCceeccccccHHHHHHHHh--CCCCCCEEE-
Confidence 343335664 4455666777764367899998887766654 2344321 111222222222222 112234332
Q ss_pred eCCCCCCCcchhhhhcchHHHHHHHHhcCcCCcEEEE
Q 019743 226 QCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262 (336)
Q Consensus 226 ~~~dp~~~~~~~~~~l~~~~~l~~~~~~LkpgG~l~~ 262 (336)
.... ....+..+.+.|+++|+++.
T Consensus 241 d~~g-------------~~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 241 EAVG-------------IPATFELCQELVAPGGHIAN 264 (345)
T ss_pred ECCC-------------CHHHHHHHHHhccCCcEEEE
Confidence 2111 02456777789999998875
No 490
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=34.18 E-value=1.8e+02 Score=25.65 Aligned_cols=59 Identities=14% Similarity=0.145 Sum_probs=39.5
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+.++|=.|+++| ++..++++. .+.+++.++.+++.++.+.++....+ .++.++.+|+.+
T Consensus 10 ~k~~lItGa~~~-iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 70 (265)
T PRK07097 10 GKIALITGASYG-IGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG-IEAHGYVCDVTD 70 (265)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCC
Confidence 456777787765 444444431 36789999999888877766665443 358888888853
No 491
>PRK09242 tropinone reductase; Provisional
Probab=34.03 E-value=1.7e+02 Score=25.55 Aligned_cols=60 Identities=15% Similarity=0.089 Sum_probs=39.4
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhC-CCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~-~~nv~~~~~d~~~ 207 (336)
+.++|=.|+++ .++..+++.. .+.+++.++.+++.++....+..... -.++.++.+|+.+
T Consensus 9 ~k~~lItGa~~-gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~ 71 (257)
T PRK09242 9 GQTALITGASK-GIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSD 71 (257)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCC
Confidence 45677777754 4555555442 36789999999887777666654431 2357888888753
No 492
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=33.84 E-value=4.8e+02 Score=25.86 Aligned_cols=122 Identities=16% Similarity=0.119 Sum_probs=60.4
Q ss_pred eEEEEeccccHHHHH--HHHhCCCCeEEEEecChHHHHHHHHHHHH---hCC--------C-cEEEEecchhHHHHhhhc
Q 019743 149 LVVDIGSGNGLFLLG--MARKRKDLNFLGLEVNGKLVTHCRDSLQL---SGI--------T-NGYFIATNATSTFRSIVA 214 (336)
Q Consensus 149 ~vLDiGcGsG~~~~~--la~~~p~~~v~giDis~~~l~~a~~n~~~---~~~--------~-nv~~~~~d~~~~~d~ivs 214 (336)
+|.=+|+|...+..+ ||+..++.+|+|+|++++-++..++.... .++ . ++. ...|..+ .+.
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~-~t~~~~~----~i~ 77 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLF-FSTDVEK----HVA 77 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEE-EEcCHHH----HHh
Confidence 355566665444333 44444468899999999988775432100 000 0 111 1111111 111
Q ss_pred CCCCeEEEEEeeCCCCCCCcc----hhhhhcchHHHHHHHHhcCcCCcEEEEEeCc-HHHHHHHHHHHHH
Q 019743 215 SYPGKLILVSIQCPNPDFNRP----EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI-EEVMLRMKQQFLE 279 (336)
Q Consensus 215 npp~~~d~i~~~~~dp~~~~~----~~~~~l~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~~l~~ 279 (336)
..|.+++..|.|..... +..+.-.....++++.+.|++|-.+++++-. ....+.+...+.+
T Consensus 78 ----~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~ 143 (473)
T PLN02353 78 ----EADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (473)
T ss_pred ----cCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHh
Confidence 12344454455532110 0111123468888999999887777775532 2234455555554
No 493
>PRK12939 short chain dehydrogenase; Provisional
Probab=33.54 E-value=1.8e+02 Score=25.11 Aligned_cols=59 Identities=10% Similarity=-0.034 Sum_probs=40.0
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+.++|=.| |+|.++..+++.. .+.++++++.+++.++...+..+..+ .++.++.+|+.+
T Consensus 7 ~~~vlItG-a~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~ 67 (250)
T PRK12939 7 GKRALVTG-AARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG-GRAHAIAADLAD 67 (250)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCC
Confidence 35566555 4667777777653 36789999998887766655554333 468888888854
No 494
>PRK09186 flagellin modification protein A; Provisional
Probab=33.44 E-value=98 Score=27.01 Aligned_cols=60 Identities=12% Similarity=0.151 Sum_probs=38.8
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHh-CCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLS-GITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~-~~~nv~~~~~d~~~ 207 (336)
+.++|=.|++ |.++..+|+.. .+.++++++.+++.++.+.+.+... +...+.++.+|+.+
T Consensus 4 ~k~vlItGas-~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d 66 (256)
T PRK09186 4 GKTILITGAG-GLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITD 66 (256)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCC
Confidence 3456666764 45666666542 4678999999988777666655332 22346677888753
No 495
>PRK07109 short chain dehydrogenase; Provisional
Probab=33.38 E-value=1.1e+02 Score=28.50 Aligned_cols=59 Identities=12% Similarity=0.113 Sum_probs=40.0
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
..++|=.|++ |.++..+++.+ .+.+|+.++.+++.++...+.+...+ .++.++.+|+.+
T Consensus 8 ~k~vlITGas-~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g-~~~~~v~~Dv~d 68 (334)
T PRK07109 8 RQVVVITGAS-AGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG-GEALAVVADVAD 68 (334)
T ss_pred CCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC-CcEEEEEecCCC
Confidence 3466767754 44555555442 36789999999988877776665544 357788888754
No 496
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=32.97 E-value=1.9e+02 Score=25.19 Aligned_cols=59 Identities=10% Similarity=0.001 Sum_probs=38.8
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+..+|=.| |+|.++..++++. .+.+++.++.+++.+..........+ .++.++..|+.+
T Consensus 9 ~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~ 69 (254)
T PRK08085 9 GKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEG-IKAHAAPFNVTH 69 (254)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEecCCCC
Confidence 34566667 4456666666553 36799999999887776655554433 346777788753
No 497
>PRK06139 short chain dehydrogenase; Provisional
Probab=32.84 E-value=1.7e+02 Score=27.24 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=39.9
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+..+|=.|+++ .++..+++.+ .+++|+.++.+++.++...+.++..+ .++.++..|+.+
T Consensus 7 ~k~vlITGAs~-GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g-~~~~~~~~Dv~d 67 (330)
T PRK06139 7 GAVVVITGASS-GIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG-AEVLVVPTDVTD 67 (330)
T ss_pred CCEEEEcCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEEeeCCC
Confidence 35677667654 4555555432 36889999999998887777766554 357777778753
No 498
>PLN02253 xanthoxin dehydrogenase
Probab=32.77 E-value=1.6e+02 Score=26.21 Aligned_cols=58 Identities=19% Similarity=0.165 Sum_probs=37.5
Q ss_pred CCeEEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 147 QPLVVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 147 ~~~vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+.++|=.| |+|.++..+++.+ .+.+|+.++.++...+...+... ...++.+++.|+.+
T Consensus 18 ~k~~lItG-as~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d 77 (280)
T PLN02253 18 GKVALVTG-GATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG--GEPNVCFFHCDVTV 77 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc--CCCceEEEEeecCC
Confidence 35677777 4556677766643 36899999998776654443331 12357888888854
No 499
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=32.38 E-value=99 Score=28.53 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=28.4
Q ss_pred HHHHhcCcCCcEEEEEeC----------cHHHHHHHHHHHHHcCCcc
Q 019743 248 EAVSDLLVHDGKVFLQSD----------IEEVMLRMKQQFLEYGKGK 284 (336)
Q Consensus 248 ~~~~~~LkpgG~l~~~~~----------~~~~~~~~~~~l~~~g~~~ 284 (336)
..+.++++|+|.+++|+. ...+...+.+++.+.||..
T Consensus 238 p~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p 284 (289)
T PF14740_consen 238 PELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKP 284 (289)
T ss_pred hHHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCcc
Confidence 367889999999999883 1234557888888888874
No 500
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=32.28 E-value=1.2e+02 Score=26.34 Aligned_cols=56 Identities=11% Similarity=0.062 Sum_probs=37.6
Q ss_pred EEEEeccccHHHHHHHHhC--CCCeEEEEecChHHHHHHHHHHHHhCCCcEEEEecchhH
Q 019743 150 VVDIGSGNGLFLLGMARKR--KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207 (336)
Q Consensus 150 vLDiGcGsG~~~~~la~~~--p~~~v~giDis~~~l~~a~~n~~~~~~~nv~~~~~d~~~ 207 (336)
+|=.| |+|.++..+++.. .+.++++++.++...+.........+ .++.++.+|+.+
T Consensus 4 vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 61 (255)
T TIGR01963 4 ALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG-GSVIYLVADVTK 61 (255)
T ss_pred EEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEECCCCC
Confidence 44445 5677777777653 46789999999877666555444333 468888888864
Done!