RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 019743
(336 letters)
>gnl|CDD|217012 pfam02390, Methyltransf_4, Putative methyltransferase. This is a
family of putative methyltransferases. The aligned
region contains the GXGXG S-AdoMet binding site
suggesting a putative methyltransferase activity.
Length = 198
Score = 90.1 bits (224), Expect = 2e-21
Identities = 51/202 (25%), Positives = 93/202 (46%), Gaps = 17/202 (8%)
Query: 134 FDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSL-QL 192
F +DW A + + QPL ++IG G G FL+ MA+K D F+G+E+ V + L
Sbjct: 9 FTLDWQALFGNE-QPLFLEIGCGMGDFLVAMAKKNPDKLFIGIEIRVPGVDKALKKIIAL 67
Query: 193 SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD 252
G+ N + +A ++ G L + I P+P + H+ R++Q ++ +
Sbjct: 68 RGLQNLRILCGDAMKLLPNLFP--DGSLQKIFINFPDPWPKKRHHKRRLLQPEFLKEYAR 125
Query: 253 LLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGEN---SFGV 309
+L G + L +D+EE M + E+ + +L + L E+ +
Sbjct: 126 VLKPGGVLHLATDVEEYFEWMLEHLSEHPLFERIL----------ESTDLNEDPITDLRI 175
Query: 310 RSDWEQHVIDRGAPMYRLMLSK 331
+++EQ V G P++ L+ K
Sbjct: 176 STEYEQKVQRLGGPIFELIFIK 197
>gnl|CDD|234649 PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.
Length = 202
Score = 89.4 bits (223), Expect = 3e-21
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 3/146 (2%)
Query: 136 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI 195
+DW+ + + A P+ ++IG G G FL+ MA+ D+NF+G+EV+ V ++ G+
Sbjct: 31 LDWAELFGNDA-PIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL 89
Query: 196 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 255
TN + +A + G L + + P+P + H+ R+VQ + + L
Sbjct: 90 TNLRLLCGDAVEVLLDMFP--DGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLK 147
Query: 256 HDGKVFLQSDIEEVMLRMKQQFLEYG 281
G++ +D E M + G
Sbjct: 148 PGGEIHFATDWEGYAEYMLEVLSAEG 173
>gnl|CDD|223298 COG0220, COG0220, Predicted S-adenosylmethionine-dependent
methyltransferase [General function prediction only].
Length = 227
Score = 85.0 bits (211), Expect = 2e-19
Identities = 49/202 (24%), Positives = 80/202 (39%), Gaps = 15/202 (7%)
Query: 136 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI 195
DWSA + + P+V++IG G G FL+ MA+K + NFLG+E+ V ++ G+
Sbjct: 38 GDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL 97
Query: 196 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 255
N + +A ++ G L + I P+P + H+ R+ Q ++ + L
Sbjct: 98 KNLRLLCGDAVEVLDYLIP--DGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLK 155
Query: 256 HDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDE---CDTKTNQGGWLGENSFGVRSD 312
G + +D EE M + LE+ +D N E F
Sbjct: 156 PGGVLHFATDNEEYFEWMMLEVLEHPPFLKFESEDLHYNLPPPDNNPVTEYEQKF----- 210
Query: 313 WEQHVIDRGAPMYRLMLSKPSC 334
G P+Y L K
Sbjct: 211 -----RRLGHPVYDLEFIKKKG 227
>gnl|CDD|215761 pfam00162, PGK, Phosphoglycerate kinase.
Length = 383
Score = 86.7 bits (216), Expect = 4e-19
Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
E+P+ AI+GG + +K + L + D L+ G M+ + A G + LVE+ +
Sbjct: 187 ERPFVAILGGAKVSDKIKVIENLLDKVDKLLIGGGMANTFLKAQGYNIGKSLVEEDLIET 246
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
A +L++ A++K + I+ P D + + ++ IPDGW +DIGP+++E
Sbjct: 247 AKELLEKAKEKGVKIVLPVDVVVADEFSADAETKVVDVDEIPDGWMGLDIGPKTIELFAE 306
Query: 125 TITKCK 130
I K
Sbjct: 307 VIKDAK 312
>gnl|CDD|234613 PRK00073, pgk, phosphoglycerate kinase; Provisional.
Length = 389
Score = 82.8 bits (206), Expect = 9e-18
Identities = 40/125 (32%), Positives = 61/125 (48%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
E+P+ AI+GG + +K L L + D LI G M+ + A G V LVE+ D
Sbjct: 184 ERPFVAILGGAKVSDKIGVLENLLEKVDKLIIGGGMANTFLKAQGYNVGKSLVEEDLIDT 243
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITST 125
A +L++ A++K + I P D K + + IPD W +DIGP+++E
Sbjct: 244 AKELLEKAKEKGVKIPLPVDVVVAKEFSDAEATVVSVDEIPDDWMILDIGPKTIELFAEI 303
Query: 126 ITKCK 130
I K
Sbjct: 304 IKDAK 308
>gnl|CDD|238195 cd00318, Phosphoglycerate_kinase, Phosphoglycerate kinase (PGK) is
a monomeric enzyme which catalyzes the transfer of the
high-energy phosphate group of 1,3-bisphosphoglycerate
to ADP, forming ATP and 3-phosphoglycerate. This
reaction represents the first of the two substrate-level
phosphorylation events in the glycolytic pathway.
Substrate-level phosphorylation is defined as production
of ATP by a process, which is catalyzed by
water-soluble enzymes in the cytosol; not involving
membranes and ion gradients. .
Length = 397
Score = 81.9 bits (203), Expect = 2e-17
Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
E+P+ AI+GG + +K + L + D LI G M+F + A G+ + L E+ +
Sbjct: 188 ERPFVAILGGAKVSDKIQVIENLLDKVDYLIIGGGMAFTFLKAQGMDIGKSLFEEDGIEL 247
Query: 66 ASDLIQFARDKHITILYPKDFWC-TKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
A L++ A+ K + I+ P D K ++ GIPDGW +DIGP+++E
Sbjct: 248 AKSLLEKAKAKGVKIVLPVDVVVADKFKADANTKVVTDDGIPDGWMGLDIGPKTIELFAE 307
Query: 125 TITKCK 130
I K K
Sbjct: 308 VIRKAK 313
>gnl|CDD|178602 PLN03034, PLN03034, phosphoglycerate kinase; Provisional.
Length = 481
Score = 81.6 bits (201), Expect = 4e-17
Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 1/126 (0%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
++P+AAI+GG + +K + L +CD L+ G M F A GL V LVE+ +
Sbjct: 266 KRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLEL 325
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
A+ L+ A+ K +++L P D P+ +I P+ IPDGW +DIGP SV+
Sbjct: 326 ATSLLAKAKAKGVSLLLPTDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSVKTFNE 385
Query: 125 TITKCK 130
+ +
Sbjct: 386 ALDTTQ 391
>gnl|CDD|161703 TIGR00091, TIGR00091, tRNA (guanine-N(7)-)-methyltransferase. This
predicted S-adenosylmethionine-dependent
methyltransferase is found in a single copy in most
Bacteria. It is also found, with a short amino-terminal
extension in eukaryotes. Its function is unknown. In E.
coli, this protein flanks the DNA repair protein MutY,
also called micA [Protein synthesis, tRNA and rRNA base
modification].
Length = 194
Score = 75.9 bits (187), Expect = 3e-16
Identities = 41/198 (20%), Positives = 83/198 (41%), Gaps = 16/198 (8%)
Query: 137 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGIT 196
D++ + PL ++IG G G FL+ MA++ D NFLG+E++ +V + G+
Sbjct: 8 DFATVF-GNKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK 66
Query: 197 NGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVH 256
N + + +A G L V + P+P + ++ R+ Q ++ +++L
Sbjct: 67 NLHVLCGDANELLDKFFPD--GSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKK 124
Query: 257 DGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVR---SDW 313
G + ++D E + M + E T++ L + +++
Sbjct: 125 GGVIHFKTDNEPLFEDMLKVLSEND----------LFENTSKSTDLNNSPLSRPRNMTEY 174
Query: 314 EQHVIDRGAPMYRLMLSK 331
EQ G P++ L +
Sbjct: 175 EQRFERLGHPVFDLCFER 192
>gnl|CDD|165923 PLN02282, PLN02282, phosphoglycerate kinase.
Length = 401
Score = 76.9 bits (189), Expect = 1e-15
Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 1/126 (0%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
+KP+AAI+GG + K + L + D L+ G M F A G V LVE+ D
Sbjct: 191 KKPFAAIVGGSKVSTKIGVIESLLEKVDILLLGGGMIFTFYKAQGYSVGSSLVEEDKLDL 250
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
A+ LI+ A+ K +++L P D P+ ++ P+ IPDGW +DIGP S++ +
Sbjct: 251 ATSLIEKAKAKGVSLLLPTDVVIADKFAPDANSKVVPASAIPDGWMGLDIGPDSIKTFSE 310
Query: 125 TITKCK 130
+ K
Sbjct: 311 ALDTTK 316
>gnl|CDD|237572 PRK13962, PRK13962, bifunctional phosphoglycerate
kinase/triosephosphate isomerase; Provisional.
Length = 645
Score = 77.5 bits (191), Expect = 1e-15
Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 3/127 (2%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
++P+ AI+GG + +K + L + D L+ G M++ + A G V LVE+ D
Sbjct: 187 QRPFVAILGGAKVSDKIGVIENLLEKVDKLLIGGGMAYTFLKAKGYEVGKSLVEEDKLDL 246
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHPNQVEI--FPSHGIPDGWEPVDIGPRSVEEIT 123
A +L+ A +K + +L P D K N E PS IP+ W +DIGP ++E
Sbjct: 247 AKELLAKAEEKGVKLLLPVDSVVAK-EFKNDAEHKVVPSDAIPEDWMGLDIGPETIELFA 305
Query: 124 STITKCK 130
I K
Sbjct: 306 KKIADAK 312
>gnl|CDD|223204 COG0126, Pgk, 3-phosphoglycerate kinase [Carbohydrate transport and
metabolism].
Length = 395
Score = 71.8 bits (177), Expect = 6e-14
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 4/126 (3%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
E+P+ AI+GG + +K + L + D LI G M+ + A G V LVE D
Sbjct: 190 ERPFVAILGGAKVSDKIGVIENLLKKADKLIIGGGMANTFLKAQGYDVGKSLVEFDLIDG 249
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITST 125
A +L++ A+DK I+ P D K IPD +DIGP+++E
Sbjct: 250 AKELLEKAKDK---IVLPVDVVVAK-EFSRDAPATVKLEIPDDLMILDIGPKTIELFAEI 305
Query: 126 ITKCKA 131
I K
Sbjct: 306 IKGAKT 311
>gnl|CDD|173310 PTZ00005, PTZ00005, phosphoglycerate kinase; Provisional.
Length = 417
Score = 64.7 bits (158), Expect = 1e-11
Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 3/128 (2%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
++P+ AI+GG + +K + L + D +I G M+F L +P+ L ++
Sbjct: 205 QRPFLAILGGAKVADKIQLIKNLLDKVDEMIIGGGMAFTFKKVLDNMPIGKSLFDEEGAK 264
Query: 65 AASDLIQFARDKHITILYPKDFWC-TKIHHPNQVEIFP-SHGIPDGWEPVDIGPRSVEEI 122
++++ A++K++ I P DF C K + ++ GIPDGW +D GP+S+EE
Sbjct: 265 IVKEIMEKAKEKNVKIHLPVDFVCADKFDNNANTKVVTDKEGIPDGWMGLDAGPKSIEEF 324
Query: 123 TSTITKCK 130
I + K
Sbjct: 325 AEAILRAK 332
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This family
contains methyltransferase domains.
Length = 117
Score = 39.0 bits (91), Expect = 4e-04
Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 9/118 (7%)
Query: 148 PLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207
V+D G+G+G FLL AR D +G+E++ + R L L+G+ +
Sbjct: 2 DRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRV---VVG 58
Query: 208 TFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRS---LVEAVSDLLVHDGKVFL 262
R ++ G LV NP + + + + A LL G + +
Sbjct: 59 DARELLELPDGSFDLV---LGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVV 113
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 36.9 bits (86), Expect = 0.002
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN 197
V+DIG G G + +AR G++++ +++ R++ +L+
Sbjct: 5 VLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPR 52
>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 97
Score = 33.5 bits (77), Expect = 0.031
Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 12/109 (11%)
Query: 150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTF 209
++D+G G G +L + + G++++ + + ++ L+ G + +A
Sbjct: 1 ILDLGCGTG-RVLRALARAGPSSVTGVDISKEALELAKERLRDKGPKVRFVVA-----DA 54
Query: 210 RSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDG 258
R + G LV ++ R+L+ + LL G
Sbjct: 55 RDLPFEE-GSFDLVIC-----AGLSLDYLSPKQLRALLREAARLLRPGG 97
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This family
appears to be have methyltransferase activity.
Length = 151
Score = 33.2 bits (76), Expect = 0.069
Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 150 VVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207
V+D+G G G +A K +G++++ + + +++ + G N FI +
Sbjct: 7 VLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQGDIEE 65
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 32.0 bits (73), Expect = 0.096
Identities = 20/117 (17%), Positives = 35/117 (29%), Gaps = 18/117 (15%)
Query: 150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTF 209
V+D+G G G L +A G++++ + R + N + +A
Sbjct: 2 VLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEE-- 58
Query: 210 RSIVASYPGKLILVSIQCPNPDF---NRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 263
L + D + P H +E LL G + L
Sbjct: 59 ------------LPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103
>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain. This domain is
found in ribosomal RNA small subunit methyltransferase C
as well as other methyltransferases .
Length = 170
Score = 32.9 bits (76), Expect = 0.13
Identities = 25/114 (21%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTF 209
V+D+G G G+ +A++ DL +++N + + R +L +G+ NG ++ S
Sbjct: 35 VLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLENGEVFWSDLYSAV 94
Query: 210 RSIVASYPGKL-ILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262
PGK +++S NP F+ + V + + + L G++++
Sbjct: 95 E------PGKFDLIIS----NPPFHAGKATDYDVAQRFIAGAARHLKPGGELWI 138
>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function
prediction only].
Length = 248
Score = 33.4 bits (77), Expect = 0.13
Identities = 35/189 (18%), Positives = 70/189 (37%), Gaps = 33/189 (17%)
Query: 130 KAFPFDIDWS--AAYHDPAQP-LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHC 186
F + D AA+ + ++D+G+GNG L +A++ + +G+E+ +
Sbjct: 25 CGFRYGTDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMA 84
Query: 187 RDSLQLSGIT-NGYFI--------ATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEH 237
+ ++ L+ + I ++F I+ + P S NP R
Sbjct: 85 QRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQ-GSRLNENP--LRAIA 141
Query: 238 RWRMVQRSL---VEAVSDLLVHDGKVFLQS------DIEEVMLRM-----KQQFL---EY 280
R + L + A + LL G++ +I E++ + QF+
Sbjct: 142 RH-EITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKRIQFVYPKIG 200
Query: 281 GKGKLVLVQ 289
VLV+
Sbjct: 201 KAANRVLVE 209
>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors
[Translation, ribosomal structure and biogenesis].
Length = 280
Score = 32.7 bits (75), Expect = 0.25
Identities = 9/66 (13%), Positives = 33/66 (50%)
Query: 136 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI 195
++ + A ++D+G+G+G + +A++ D + ++++ + R++ + +G+
Sbjct: 100 VEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL 159
Query: 196 TNGYFI 201
+
Sbjct: 160 VRVLVV 165
>gnl|CDD|222313 pfam13679, Methyltransf_32, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 143
Score = 31.4 bits (72), Expect = 0.29
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 150 VVDIGSGNG-L-FLL--GMARKRKDLNFLGLEVNGKLVTHCR 187
VVD G+G G L F+L + +++ + +G++ +LV
Sbjct: 29 VVDHGAGKGYLGFILYYLLFKRKYGVRVVGIDARAELVEKAN 70
>gnl|CDD|198353 cd07775, FGGY_AI-2K, Autoinducer-2 kinases; a subfamily of the FGGY
family of carbohydrate kinases. This subfamily is
composed of bacterial autoinducer-2 (AI-2) kinases and
similar proteins. AI-2 is a small chemical
quorum-sensing signal involved in interspecies
communication in bacteria. Cytoplasmic autoinducer-2
kinase, encoded by the lsrK gene from Salmonella
enterica serovar Typhimurium lsr (luxS regulated)
operon, is the prototypical member of this subfamily.
AI-2 kinase catalyzes the phosphorylation of
intracellular AI-2 to phospho-AI-2, which leads to the
inactivation of lsrR, the repressor of the lsr operon.
Members of this family are homologs of glycerol
kinase-like proteins and belong to the FGGY family of
carbohydrate kinases, the monomers of which contain two
large domains, which are separated by a deep cleft that
forms the active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Length = 452
Score = 31.3 bits (71), Expect = 0.83
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 18/84 (21%)
Query: 149 LVVDIGSGNG---LF-LLG--MARKRKDLNFLG-----------LEVNGKLVTHC-RDSL 190
L D G+G+ +F L G +A +++ L +VN KLV C R +L
Sbjct: 3 LAFDAGTGSVRAVIFDLTGNQIAVSQEEWEHLAEPRYPGSMDFDPQVNWKLVCRCIRQAL 62
Query: 191 QLSGITNGYFIATNATSTFRSIVA 214
SGI A +ATS IV
Sbjct: 63 ARSGIAPIDIAAVSATSMREGIVL 86
>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 30.3 bits (69), Expect = 1.1
Identities = 33/157 (21%), Positives = 62/157 (39%), Gaps = 41/157 (26%)
Query: 150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGY--FIATNATS 207
V+++G+G+G+ + A+ K + +G+++N V + + +L+ I N I ++
Sbjct: 27 VLEVGTGSGIVAIVAAKNGKKV--VGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE 84
Query: 208 TFRSIVASYPGKLILVSIQCPNPDFNRP------EHRW--------------RMVQRSLV 247
FR +IL FN P E W R V +
Sbjct: 85 PFR----GDKFDVIL---------FNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFL 131
Query: 248 EAVSDLLVHDGKVF-LQS---DIEEVMLRMKQQFLEY 280
+ V L G++ LQS +EV+ +++ E
Sbjct: 132 DEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEA 168
>gnl|CDD|237615 PRK14121, PRK14121, tRNA (guanine-N(7)-)-methyltransferase;
Provisional.
Length = 390
Score = 30.3 bits (69), Expect = 1.3
Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 5/139 (3%)
Query: 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNAT 206
+ ++++IG G+G LL A+ + F+G+E++ + ++L + N I +A
Sbjct: 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDA- 181
Query: 207 STFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFLQSDI 266
++ S + I V P +++ HR R++ + +L G + L++D
Sbjct: 182 RLLLELLPSNSVEKIFVHFPVP---WDKKPHR-RVISEDFLNEALRVLKPGGTLELRTDS 237
Query: 267 EEVMLRMKQQFLEYGKGKL 285
E + FL+ K K+
Sbjct: 238 ELYFEFSLELFLKLPKAKI 256
>gnl|CDD|233713 TIGR02081, metW, methionine biosynthesis protein MetW. This
protein is found alongside MetX, of the enzyme that
acylates homoserine as a first step toward methionine
biosynthesis, in many species. It appears to act in
methionine biosynthesis but is not fully characterized
[Amino acid biosynthesis, Aspartate family].
Length = 194
Score = 29.6 bits (67), Expect = 1.5
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 145 PAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHC 186
P V+D+G G+G LL + R K + G+E++ V C
Sbjct: 12 PPGSRVLDLGCGDGE-LLALLRDEKQVRGYGIEIDQDGVLAC 52
>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 28.5 bits (64), Expect = 1.5
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 151 VDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSL 190
+DIG G G L + L + G++++ + + L
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERL 40
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 28.0 bits (63), Expect = 2.4
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 151 VDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRD 188
+D+G G GL +AR R G++++ +++ R
Sbjct: 1 LDVGCGTGLLAEALAR-RGGARVTGVDLSPEMLALARK 37
>gnl|CDD|223434 COG0357, GidB, Predicted S-adenosylmethionine-dependent
methyltransferase involved in bacterial cell division
[Cell envelope biogenesis, outer membrane].
Length = 215
Score = 28.8 bits (65), Expect = 3.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGK 181
V+DIGSG G + +A DL LE GK
Sbjct: 71 VLDIGSGAGFPGIPLAIAFPDLKVTLLESLGK 102
>gnl|CDD|241467 cd13313, PH_NF1, Neurofibromin-1 Pleckstrin homology-like domain.
Neurofibromin (NF1) contains a N-terminal RasGAP domain,
followed by a Sec14-like domain, and a PH domain.
Surprisingly, in neurofibromin the PH domain alone is
not sufficient for phospholipid binding and instead
requires the presence of the Sec-14 domain. The Sec-14
domain has been shown to bind
1-(3-sn-phosphatidyl)-sn-glycerol (PtdGro),
(3-sn-phosphatidyl)-ethanolamine (PtdEtn) and -choline
(PtdCho) and to a minor extent to
(3-sn-phosphatidyl)-l-serine (PtdSer) and
1-(3-sn-phosphatidyl)-d-myo-inositol (PtdIns).
Neurofibromatosis type 1 (also known as von
Recklinghausen neurofibromatosis or NF1) is a genetic
disorder caused by alterations in the tumor suppressor
gene NF1. Hallmark symptoms include neural crest derived
tumors, pigmentation anomalies, bone deformations, and
learning disabilities. Mutations of the tumour
suppressor gene NF1 are responsible for disease
pathogenesis, with 90% of the alterations being nonsense
codons. PH domains have diverse functions, but in
general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to
the plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 110
Score = 27.4 bits (61), Expect = 3.9
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 241 MVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQF---LEYGKGKLVLVQDECDT 294
+++ V S LL ++ S+IEEV L QF + G L + +CD
Sbjct: 39 SAEKTKVLGHSVLL---NDIYYASEIEEVCLVDDNQFTLTIANEGGPLTFMHADCDK 92
>gnl|CDD|129571 TIGR00479, rumA, 23S rRNA (uracil-5-)-methyltransferase RumA. This
protein family was first proposed to be RNA
methyltransferases by homology to the TrmA family. The
member from E. coli has now been shown to act as the 23S
RNA methyltransferase for the conserved U1939. The gene
is now designated rumA and was previously designated
ygcA [Protein synthesis, tRNA and rRNA base
modification].
Length = 431
Score = 28.6 bits (64), Expect = 4.6
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 147 QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNAT 206
+ LVVD G G F L +A++ K + +G+EV + V + + +L+GI N F+A
Sbjct: 293 EELVVDAYCGVGTFTLPLAKQAKSV--VGIEVVPESVEKAQQNAELNGIANVEFLAGTLE 350
Query: 207 STF 209
+
Sbjct: 351 TVL 353
>gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA
(uracil-5-)-methyltransferase [Translation, ribosomal
structure and biogenesis].
Length = 432
Score = 28.8 bits (65), Expect = 4.6
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTF 209
V+D+ G G F L +A++ K + G+E++ + V +++ +GI N FIA +A
Sbjct: 297 VLDLYCGVGTFGLPLAKRVKKV--HGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFT 354
Query: 210 RSIVASY-PGKLIL 222
+ Y P +++
Sbjct: 355 PAWWEGYKPDVVVV 368
>gnl|CDD|211555 TIGR00138, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase
GidB. GidB (glucose-inhibited division protein B)
appears to be present and in a single copy in nearly all
complete eubacterial genomes. It is missing only from
some obligate intracellular species of various lineages
(Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera,
etc.). GidB shows a methytransferase fold in its the
crystal structure, and acts as a 7-methylguanosine
(m(7)G) methyltransferase, apparently specific to 16S
rRNA [Protein synthesis, tRNA and rRNA base
modification].
Length = 181
Score = 28.0 bits (63), Expect = 4.7
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVT 184
V+DIGSG G + +A R +L LE N K V
Sbjct: 46 VIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVA 80
>gnl|CDD|219556 pfam07757, AdoMet_MTase, Predicted AdoMet-dependent
methyltransferase. Proteins in this family have been
predicted to function as AdoMet-dependent
methyltransferases.
Length = 112
Score = 27.5 bits (61), Expect = 4.8
Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 11/56 (19%)
Query: 138 WSAAYHDPAQPLVVDIGSGNGL--FLLGM---------ARKRKDLNFLGLEVNGKL 182
W + VDIG GNGL ++L RKRK + E L
Sbjct: 50 WRQTRSAESLQSFVDIGCGNGLLVYILASEGYRGYGIDLRKRKLWDMYPAEPQVDL 105
>gnl|CDD|220990 pfam11124, Pho86, Inorganic phosphate transporter Pho86. Pho86p is
an ER protein which is produced in response to phosphate
starvation. It is essential for growth when phosphate
levels are limiting. Pho86p is also involved in the
regulation of Pho84p, a high-affinity phosphate
transporter which is localised to the endoplasmic
reticulum (ER) in low phosphate medium. When the level
of phosphate increases Pho84p is transported to the
vacuole. Pho86p is required for packaging of Pho84p in
to COPII vesicles.
Length = 296
Score = 28.5 bits (64), Expect = 4.8
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Query: 255 VHDGKVFLQSDIEEV-----MLRMKQQFLEYGKGK 284
+ +V+++SDI+E MLR +Q + EY KGK
Sbjct: 206 LGVRRVYVKSDIDEDLIDWAMLRSRQIYKEYLKGK 240
>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal
structure and biogenesis].
Length = 300
Score = 28.4 bits (64), Expect = 5.1
Identities = 27/131 (20%), Positives = 55/131 (41%), Gaps = 20/131 (15%)
Query: 132 FPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQ 191
P D+ V+D+G G G+ L +A+K ++VN + V R +L
Sbjct: 154 LPPDLGGK----------VLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLA 203
Query: 192 LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVS 251
+G+ N A+N + + + LI+ NP F+ + + + ++ A +
Sbjct: 204 ANGVENTEVWASN---LYEPVEGKF--DLIIS-----NPPFHAGKAVVHSLAQEIIAAAA 253
Query: 252 DLLVHDGKVFL 262
L G++++
Sbjct: 254 RHLKPGGELWI 264
>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 257
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/76 (17%), Positives = 30/76 (39%)
Query: 130 KAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDS 189
+ + P V+DIG G G L + +G++++ +++ R
Sbjct: 32 ELLDLLLVLRLLRLLPGGLGVLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARAR 91
Query: 190 LQLSGITNGYFIATNA 205
+ +G+ F+ +A
Sbjct: 92 AEGAGLGLVDFVVADA 107
>gnl|CDD|185752 cd08961, GH64-TLP-SF, glycoside hydrolase family 64
(beta-1,3-glucanases which produce specific
pentasaccharide oligomers) and thaumatin-like proteins.
This superfamily includes glycoside hydrolases of family
64 (GH64), these are mostly bacterial
beta-1,3-glucanases which cleave long-chain
polysaccharide beta-1,3-glucans, into specific
pentasaccharide oligomers and are implicated in fungal
cell wall degradation. Also included in this superfamily
are thaumatin, the sweet-tasting protein from the
African berry Thaumatococcus daniellii, and
thaumatin-like proteins (TLPs) which are involved in
host defense and a wide range of developmental processes
in fungi, plants, and animals. Like GH64s, some TLPs
also hydrolyze the beta-1,3-glucans of the type commonly
found in fungal walls. Plant TLPs are classified as
pathogenesis-related (PR) protein family 5 (PR5), their
expression is induced by environmental stresses such as
pathogen/pest attack, drought and cold. Several members
of the plant TLP family have been reported as food
allergens from fruits, and pollen allergens from
conifers. Streptomyces matensis
laminaripentaose-producing, beta-1,3-glucanase
(GH64-LPHase), and TLPs have in common, a core
N-terminal barrel domain (domain I) composed of 10
beta-strands, two coming from the C-terminal region of
the protein. In TLPs, this core domain is flanked by two
shorter domains (domains II and III). Small TLPs, such
as Triticum aestivum thaumatin-like xylanase inhibitor,
have a deletion in the third domain (domain II).
GH64-LPHase has a second C-terminal domain which
corresponds positional to, but is much larger than,
domain III of TLP. GH64-LPHase and TLPs are described as
crescent-fold structures. Critical functional residues,
common to GH64-LPHase and TLPs are a Glu and an Asp
residue. LPHase has an electronegative,
substrate-binding cleft and the afore mentioned
conserved Glu and Asp residues are the catalytic
residues essential for beta-1,3-glucan cleavage. In
TLPs, these residues are two of the four conserved
residues which contribute to the strong electronegative
character of the cleft which is associated with the
antifungal activity of TLPs.
Length = 153
Score = 27.2 bits (60), Expect = 8.2
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 111 PVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQP 148
P+ +GPR + + ++ FD D + +
Sbjct: 111 PMTVGPRRGDGTCLSTGDAYSYAFD-DHESTFTCGGGR 147
>gnl|CDD|233046 TIGR00603, rad25, DNA repair helicase rad25. All proteins in this
family for which functions are known are DNA-DNA
helicases used for the initiation of nucleotide excision
repair and transacription as part of the TFIIH
complex.This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 732
Score = 27.8 bits (62), Expect = 9.4
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 27/82 (32%)
Query: 222 LVSIQCPNPDFNRPE--HRWRMVQRSLVEAVSDLLVHDGKVFLQ-SDIEEVMLRMKQ--- 275
LV+I P RPE H +++ SL AVS V L+ DI EV+ R+ +
Sbjct: 41 LVAIAEP---VCRPEHIHEYKLTAYSLYAAVS--------VGLETEDIIEVLGRLSKTPI 89
Query: 276 -----QFLE-----YGKGKLVL 287
+F+ YGK KLVL
Sbjct: 90 PKGIIEFIRLCTQSYGKVKLVL 111
>gnl|CDD|217086 pfam02527, GidB, rRNA small subunit methyltransferase G. This is a
family of bacterial glucose inhibited division proteins
these are probably involved in the regulation of cell
devision. GidB has been shown to be a methyltransferase
G specific to the rRNA small subunit. Previously
identified as a glucose-inhibited division protein B
that appears to be present and in a single copy in all
complete eubacterial genomes so far sequenced. GidB
specifically methylates the N7 position of a guanosine
in 16S rRNA.
Length = 184
Score = 27.2 bits (61), Expect = 9.4
Identities = 14/56 (25%), Positives = 22/56 (39%)
Query: 142 YHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN 197
Y D + V D+GSG G + +A D LE K + + + + N
Sbjct: 44 YLDNIRIKVADVGSGAGFPGIPLAIAFPDKKLTLLESLLKKINFLEELKKELNLEN 99
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.435
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,354,753
Number of extensions: 1674622
Number of successful extensions: 1609
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1591
Number of HSP's successfully gapped: 48
Length of query: 336
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 239
Effective length of database: 6,635,264
Effective search space: 1585828096
Effective search space used: 1585828096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.6 bits)