RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 019743
(336 letters)
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1,
S-adenosyl-L-methionine, tRNA Pro structural genomics,
structural genomics consortium, SGC; HET: SAM; 1.55A
{Homo sapiens}
Length = 235
Score = 101 bits (253), Expect = 2e-25
Identities = 43/205 (20%), Positives = 81/205 (39%), Gaps = 15/205 (7%)
Query: 130 KAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDS 189
D AQ DIG G G L+ ++ D LGLE+ K+ + +D
Sbjct: 30 NQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDR 89
Query: 190 LQL------SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQ 243
++ G N + +NA + G+L + P+P F R +H+WR++
Sbjct: 90 IRALRAAPAGGFQNIACLRSNAMKHLPNFFY--KGQLTKMFFLFPDPHFKRTKHKWRIIS 147
Query: 244 RSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLG 303
+L+ + +L G V+ +D+ E+ M F E+ + V ++D +
Sbjct: 148 PTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFERVPLEDLSE-------DPV 200
Query: 304 ENSFGVRSDWEQHVIDRGAPMYRLM 328
G ++ + V+ G + +
Sbjct: 201 VGHLGTSTEEGKKVLRNGGKNFPAI 225
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine,
phosphorylation, M7G, spout MT, tRNA processing; HET:
SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Length = 246
Score = 93.7 bits (233), Expect = 2e-22
Identities = 33/166 (19%), Positives = 69/166 (41%), Gaps = 19/166 (11%)
Query: 133 PFDIDWSAAYHDPA---------QPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLV 183
P D+DWS Y + + DIG G G ++ ++ + LG+E+ ++
Sbjct: 27 PQDMDWSKLYPYYKNAENGQMTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVT 86
Query: 184 THCRDSLQLS--------GITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRP 235
+ D + G N + NA + G+L + P+P F +
Sbjct: 87 NYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFE--KGQLSKMFFCFPDPHFKQR 144
Query: 236 EHRWRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYG 281
+H+ R++ +L+ + +L G V+ +D++++ M + E+
Sbjct: 145 KHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHP 190
>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus
stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A*
Length = 394
Score = 86.0 bits (214), Expect = 5e-19
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
++P+ AIIGG + +K + L + D LI G +++ + ALG V L+E+ +
Sbjct: 186 DRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEEDKIEL 245
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
A ++ A++K + P D + ++ P IP W +DIGP++ E
Sbjct: 246 AKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRD 305
Query: 125 TITKCK 130
I + K
Sbjct: 306 VIRESK 311
>1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics
initiative, RSGI, structural genomics, transferase;
1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A
Length = 390
Score = 85.6 bits (213), Expect = 6e-19
Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
E+PYA ++GG + +K + L R D L+ G M+F + ALG V LVE+ D
Sbjct: 183 ERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIGGAMAFTFLKALGGEVGRSLVEEDRLDL 242
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
A DL+ A + + P+D + + +FP+ IP + +DIGP++ E
Sbjct: 243 AKDLLGRAEALGVRVYLPEDVVAAERIEAGVETRVFPARAIPVPYMGLDIGPKTREAFAR 302
Query: 125 TITKCK 130
+ +
Sbjct: 303 ALEGAR 308
>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis,
transferase, bisubstrate, analog; HET: BIS EPE; 1.60A
{Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A*
Length = 415
Score = 85.7 bits (213), Expect = 7e-19
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 1/126 (0%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
+P AI+GG + +K L + R D L+ G M++ + A G + E+ +
Sbjct: 204 PRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIGGAMAYTFLKAQGYSIGKSKCEESKLEF 263
Query: 66 ASDLIQFARDKHITILYPKDFWC-TKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
A L++ A D+ + ++ P D C T+ + I IP+G +DIGP+++E+
Sbjct: 264 ARSLLKKAEDRKVQVILPIDHVCHTEFKAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQ 323
Query: 125 TITKCK 130
TI KCK
Sbjct: 324 TIGKCK 329
>3q3v_A Phosphoglycerate kinase; structural genomics, center for structural
genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A
{Campylobacter jejuni subsp}
Length = 403
Score = 85.6 bits (213), Expect = 8e-19
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
+P+ A++GG + K AL L + D LI G M+F + ALG + L+E+ +
Sbjct: 193 ARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLLEEELLEE 252
Query: 66 ASDLIQFARDKHITILYPKDFWCT-KIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
A+ ++ ++ + I P D ++ P+ IP+GW +DIGP SV
Sbjct: 253 ANKILTKGKNLGVKIYLPVDVVAAPACSQDVPMKFVPAQEIPNGWMGLDIGPASVRLFKE 312
Query: 125 TITKCK 130
I+ +
Sbjct: 313 VISDAQ 318
>4fey_A Phosphoglycerate kinase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: ADP;
2.30A {Francisella tularensis subsp} PDB: 4ehj_A
Length = 395
Score = 82.5 bits (205), Expect = 9e-18
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 1/126 (0%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
+KP AAI+GG + K + L+ L + + LI G ++ + A G V L E+
Sbjct: 185 KKPMAAIVGGSKVSTKLSVLNNLLDKVEILIVGGGIANTFIKAEGFDVGNSLYEQDLVAE 244
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
A++++ A+ + I P D K N Q I + +DIGP S + I
Sbjct: 245 ATEILAKAKALGVNIPVPVDVRVAKEFSENAQAIIKKVSDVVADEMILDIGPESQKIIAE 304
Query: 125 TITKCK 130
+
Sbjct: 305 LLKSAN 310
>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability,
crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga
maritima} SCOP: c.86.1.1
Length = 398
Score = 81.0 bits (201), Expect = 2e-17
Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 2/127 (1%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
EKPY ++GG + +K + L + D ++ G M F + ALG V VE+ D
Sbjct: 185 EKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDKIDL 244
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFP-SHGIPDGWEPVDIGPRSVEEIT 123
A +L++ A++K + I+ P D + P + ++ GIP+GW +DIGP ++E
Sbjct: 245 AKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFK 304
Query: 124 STITKCK 130
++ K
Sbjct: 305 QKLSDAK 311
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold
methyltransferase, tRNA modification,
S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A
{Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Length = 218
Score = 77.3 bits (191), Expect = 8e-17
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 3/133 (2%)
Query: 136 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI 195
+D+ A + A P+ ++IG G G L+ MA+ R + +FLG+EV+ V C S G+
Sbjct: 25 LDFPALFGREA-PVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGL 83
Query: 196 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 255
+N + +A ++ L +V + P+P ++ R+VQ E V L
Sbjct: 84 SNLRVMCHDAVEVLHKMIP--DNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQ 141
Query: 256 HDGKVFLQSDIEE 268
G + +D E
Sbjct: 142 LGGVFHMATDWEP 154
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis}
SCOP: c.66.1.53
Length = 213
Score = 75.4 bits (186), Expect = 3e-16
Identities = 24/137 (17%), Positives = 63/137 (45%), Gaps = 4/137 (2%)
Query: 132 FPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQ 191
+ W+ + + P+ +++G+G G F+ GMA++ D+N++G+E+ ++ ++
Sbjct: 25 ADYKGKWNTVFGNDN-PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVK 83
Query: 192 LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVS 251
S N + +A T + PG++ V + +P + + R+ ++
Sbjct: 84 DSEAQNVKLLNIDAD-TLTDVFE--PGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYE 140
Query: 252 DLLVHDGKVFLQSDIEE 268
+++ G + ++D
Sbjct: 141 EVMGKGGSIHFKTDNRG 157
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich,
S-adenosylmeth dependent, structural genomics, PSI;
2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Length = 214
Score = 74.2 bits (183), Expect = 7e-16
Identities = 23/137 (16%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
Query: 132 FPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQ 191
W + + P+ V++GSG G F+ GMA++ D+N++G+++ ++++ D +
Sbjct: 28 LEAKAKWRDLFGNDN-PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVL 86
Query: 192 LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVS 251
G+ N + + + G++ + + +P + + R+ ++ ++
Sbjct: 87 EVGVPNIKLLWVDGSDLTDYFE---DGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFK 143
Query: 252 DLLVHDGKVFLQSDIEE 268
+L +G++ ++D
Sbjct: 144 RILPENGEIHFKTDNRG 160
>2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia,
transferase, phosphoprotein, KI glycolysis,
nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens}
PDB: 2wzc_A* 2x13_A* 2x15_A* 2xe6_A* 2xe7_A* 2xe8_A*
2ybe_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A*
2x14_A* 2y3i_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A*
...
Length = 416
Score = 76.4 bits (189), Expect = 1e-15
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 3/128 (2%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
E+P+ AI+GG + +K ++ + + + +I G M+F + L + + L ++
Sbjct: 204 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAK 263
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIHHP--NQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
DL+ A + I P DF + + GIP GW +D GP S ++
Sbjct: 264 IVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKY 323
Query: 123 TSTITKCK 130
+T+ K
Sbjct: 324 AEAVTRAK 331
>3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi
malaria parasite; 2.70A {Plasmodium falciparum} PDB:
1ltk_A* 3oza_A
Length = 417
Score = 76.4 bits (189), Expect = 1e-15
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
++P AI+GG + +K + L + D +I G M++ L + + L ++ +
Sbjct: 206 QRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGMAYTFKKVLNNMKIGTSLFDEAGSK 265
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFP-SHGIPDGWEPVDIGPRSVEEI 122
++++ A+ K++ I P DF N + GIPD W +D GP+S+E
Sbjct: 266 IVGEIMEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWMGLDAGPKSIENY 325
Query: 123 TSTITKCK 130
I K
Sbjct: 326 KDVILTSK 333
>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000,
structural genomics/proteomics initiative, RSGI, NPPSFA;
HET: 3PG; 2.10A {Pyrococcus horikoshii}
Length = 410
Score = 75.3 bits (186), Expect = 2e-15
Identities = 24/132 (18%), Positives = 51/132 (38%), Gaps = 7/132 (5%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFL--ASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGAN 63
+ P ++GG + + + + R D ++ GL++ A G + + VE
Sbjct: 189 DSPKIYVLGGAKVEDSLKVVENVLRRERADLVLTGGLVANVFTLAKGFDLGRKNVEFMKK 248
Query: 64 DAASDLIQFARDK----HITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRS 118
D ++ A + + I P DF + + G+ ++ +DIG R+
Sbjct: 249 KGLLDYVKHAEEILDEFYPYIRTPVDFAVDYKGERVEIDLLSENRGLLHQYQIMDIGKRT 308
Query: 119 VEEITSTITKCK 130
E+ + K +
Sbjct: 309 AEKYREILMKAR 320
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly
mutant, permutation, permuted sequence, protein foldin
domain protein; 2.30A {Saccharomyces cerevisiae} SCOP:
c.86.1.1
Length = 416
Score = 74.9 bits (185), Expect = 3e-15
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
+P+ AI+GG + +K + L + D +I G M+F L + + +K +
Sbjct: 132 TRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAE 191
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFP-SHGIPDGWEPVDIGPRSVEEI 122
L++ A+ K + ++ P DF + + GIP GW+ +D GP S +
Sbjct: 192 IVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLF 251
Query: 123 TSTITKCK 130
+T+ K K
Sbjct: 252 AATVAKAK 259
>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl
acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A
{Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A*
Length = 415
Score = 74.5 bits (184), Expect = 5e-15
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
+P+ AI+GG + +K + L + D +I G M+F L + + +K +
Sbjct: 202 TRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAE 261
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFP-SHGIPDGWEPVDIGPRSVEEI 122
L++ A+ K + ++ P DF + + GIP GW+ +D GP S +
Sbjct: 262 IVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLF 321
Query: 123 TSTITKCK 130
+T+ K K
Sbjct: 322 AATVAKAK 329
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A
{Escherichia coli}
Length = 387
Score = 73.3 bits (181), Expect = 1e-14
Identities = 29/126 (23%), Positives = 45/126 (35%), Gaps = 6/126 (4%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
+P AI+GG + K L L+ D LI G ++ + A G V L E D
Sbjct: 182 ARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIANTFIAAQGHDVGKSLYEADLVDE 241
Query: 66 ASDLIQFARDKHITILYPKDFWCTKIHHPN-QVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
A L+ I P D + + + + +DIG S +E+
Sbjct: 242 AKRLLTTCN-----IPVPSDVRVATEFSETAPATLKSVNDVKADEQILDIGDASAQELAE 296
Query: 125 TITKCK 130
+ K
Sbjct: 297 ILKNAK 302
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 70.9 bits (173), Expect = 1e-14
Identities = 18/171 (10%), Positives = 52/171 (30%), Gaps = 15/171 (8%)
Query: 135 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNG----KLVTHCRDSL 190
D ++ +V+D+G+G+G +AR+ + L+ + K+
Sbjct: 17 DAEFEQLR-SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKP 75
Query: 191 QLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAV 250
G+ N ++ A P + + P + ++ +
Sbjct: 76 AKGGLPNLLYLWATA--------ERLPPLSGVGELHVLMP-WGSLLRGVLGSSPEMLRGM 126
Query: 251 SDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGW 301
+ + + ++ + + E+ + + + + GW
Sbjct: 127 AAVCRPGASFLVALNLHAWRPSV-PEVGEHPEPTPDSADEWLAPRYAEAGW 176
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 56.0 bits (134), Expect = 2e-09
Identities = 18/133 (13%), Positives = 45/133 (33%), Gaps = 12/133 (9%)
Query: 137 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCR----DSLQL 192
+ + + +D+G+G+G + +A ++ ++G++ + +
Sbjct: 16 ELTEIIGQF-DRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSK 74
Query: 193 SGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSD 252
G++N F+ A S+ +SI P R ++ V+D
Sbjct: 75 GGLSNVVFVIAAA----ESLPFELKNIADSISILFPWGTL---LEYVIKPNRDILSNVAD 127
Query: 253 LLVHDGKVFLQSD 265
L + +
Sbjct: 128 LAKKEAHFEFVTT 140
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 48.2 bits (115), Expect = 1e-06
Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 14/143 (9%)
Query: 150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN---------GYF 200
++D+ SGNG+ L ++ R +G+E+ +L + S+ + + +
Sbjct: 53 IIDLCSGNGIIPLLLST-RTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKI 111
Query: 201 IATNATSTFRSIVASYP-GKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGK 259
+ + P S++ N F H + + LL GK
Sbjct: 112 TDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGK 171
Query: 260 VFL---QSDIEEVMLRMKQQFLE 279
+ +++ M++ LE
Sbjct: 172 ANFVHRPERLLDIIDIMRKYRLE 194
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 44.5 bits (105), Expect = 2e-05
Identities = 18/147 (12%), Positives = 42/147 (28%), Gaps = 19/147 (12%)
Query: 150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN------------ 197
+ D+G+G G + +A + + E + ++ R SL+L
Sbjct: 40 IADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADV 99
Query: 198 GYFIATNATSTFRS----IVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDL 253
+ V P + P+ + + S +
Sbjct: 100 TLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAI 159
Query: 254 LVHDGK---VFLQSDIEEVMLRMKQQF 277
+V G+ + + E++ +F
Sbjct: 160 MVSGGQLSLISRPQSVAEIIAACGSRF 186
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 38.0 bits (88), Expect = 0.002
Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 26/115 (22%)
Query: 150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTF 209
V+DIG G G FL K + + +G+++N ++ C + ++ +
Sbjct: 45 VLDIGCGRGEFLELC--KEEGIESIGVDINEDMIKFCEGKFNVVKSDAIEYLKSLPDKYL 102
Query: 210 RSIVASY----------------------PGKLILVSIQCPNPDFNRPEHRWRMV 242
++ S+ I++ PNP + +
Sbjct: 103 DGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIES--PNPTSLYSLINFYID 155
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 36.0 bits (83), Expect = 0.008
Identities = 22/113 (19%), Positives = 36/113 (31%), Gaps = 5/113 (4%)
Query: 150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTF 209
VVD GNG +A K + +V + + L GI N I
Sbjct: 26 VVDATMGNGNDTAFLAGLSKKV--YAFDVQEQALGKTSQRLSDLGIENTELILDG-HENL 82
Query: 210 RSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262
V I P+ D + ++ +E + D L G++ +
Sbjct: 83 DHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEA--IEKILDRLEVGGRLAI 133
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 35.5 bits (82), Expect = 0.012
Identities = 14/81 (17%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 141 AYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYF 200
A D P ++D+G+G GL + K + F ++++ K++ ++ + G +
Sbjct: 39 ASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKN--RFRGNLKVKY 96
Query: 201 IATNATS-----TFRSIVASY 216
I + + + +V++
Sbjct: 97 IEADYSKYDFEEKYDMVVSAL 117
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 35.7 bits (81), Expect = 0.016
Identities = 11/56 (19%), Positives = 23/56 (41%)
Query: 150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNA 205
V+D+G G L +A K +GL+++ +L+ R +++
Sbjct: 50 VLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTL 105
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 35.4 bits (81), Expect = 0.020
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 136 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDL-NFLGLEVNGKLVTHCRDSLQLSG 194
YHD + L+VD+G G G L MA++ K +G +++ ++ + S
Sbjct: 26 YKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSP 85
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.026
Identities = 36/242 (14%), Positives = 73/242 (30%), Gaps = 77/242 (31%)
Query: 85 DFWCTKIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHD 144
DF + + + +I + D + V+++ +I + +ID D
Sbjct: 8 DFETGEHQYQYK-DILS-VFEDAFVDNFDC--KDVQDMPKSILSKE----EIDHIIMSKD 59
Query: 145 PAQPLVVDIGSGNGLFLLG-MARKRKDL--NFLG--LEVN-----GKLVTHCRDSLQLSG 194
L L + K++++ F+ L +N + T R S
Sbjct: 60 AVSGT---------LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP---SM 107
Query: 195 ITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEA--VSD 252
+T Y + + A Y VS R + + ++++L+E +
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYN-----VS---------RLQPYLK-LRQALLELRPAKN 152
Query: 253 LLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDEC---DTKTNQGG---WLGENS 306
+L+ G + G GK + D C + WL +
Sbjct: 153 VLID-G--------------VL------GSGKTWVALDVCLSYKVQCKMDFKIFWL---N 188
Query: 307 FG 308
Sbjct: 189 LK 190
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 34.1 bits (78), Expect = 0.051
Identities = 8/44 (18%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLS 193
++++GS G F + D+ +E + + ++H + L+
Sbjct: 46 LLELGSFKGDFTSRLQEHFNDI--TCVEASEEAISHAQGRLKDG 87
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 33.7 bits (77), Expect = 0.068
Identities = 13/58 (22%), Positives = 29/58 (50%)
Query: 150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207
V++ G G G + +A+ D ++++ + + R++ + +GI N F+ N S
Sbjct: 41 VLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFS 98
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 33.0 bits (75), Expect = 0.085
Identities = 10/46 (21%), Positives = 24/46 (52%)
Query: 150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI 195
V+D+G G G L + + + G++V+ ++ +D L++ +
Sbjct: 33 VIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRL 78
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification,
transferase; HET: SAM; 2.00A {Methanocaldococcus
jannaschii}
Length = 272
Score = 31.9 bits (72), Expect = 0.21
Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 14/93 (15%)
Query: 123 TSTITKCKAFPFDIDWSAAY--------------HDPAQPLVVDIGSGNGLFLLGMARKR 168
T TI K F +D + +VVD+ +G G F + +A+
Sbjct: 82 TETIHKEYGCLFKLDVAKIMWSQGNIEERKRMAFISNENEVVVDMFAGIGYFTIPLAKYS 141
Query: 169 KDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFI 201
K +E N + ++++L+ + N I
Sbjct: 142 KPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPI 174
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 32.0 bits (73), Expect = 0.21
Identities = 10/59 (16%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 150 VVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207
V+D+G+G G +L +++ + ++V ++V + + + G+ N + +
Sbjct: 41 VLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENK 99
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 31.2 bits (71), Expect = 0.33
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSL 190
V+DIG +G + + G+E + ++ L
Sbjct: 36 VLDIGCSSGALGAAIKENGTRV--SGIEAFPEAAEQAKEKL 74
>3fvy_A Dipeptidyl-peptidase 3; SGC, DPP3, alternative splicing,
aminopeptidase, cytoplasm, hydrolase, metal-binding,
metalloprotease, phosphoprotein; 1.90A {Homo sapiens}
PDB: 3t6b_A 3t6j_A
Length = 728
Score = 31.4 bits (70), Expect = 0.47
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 1/92 (1%)
Query: 180 GKLVTHCRDSLQLSGITNGYFIATNATSTFRSI-VASYPGKLILVSIQCPNPDFNRPEHR 238
+LV L+ + T F S+ V ++ G I I PN D R
Sbjct: 346 ERLVASAEQLLKELPWPPTFEKDKFLTPDFTSLDVLTFAGSGIPAGINIPNYDDLRQTEG 405
Query: 239 WRMVQRSLVEAVSDLLVHDGKVFLQSDIEEVM 270
++ V V AV+ + FL+ D +++
Sbjct: 406 FKNVSLGNVLAVAYATQREKLTFLEEDDKDLY 437
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal;
HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Length = 212
Score = 30.6 bits (69), Expect = 0.50
Identities = 18/109 (16%), Positives = 31/109 (28%), Gaps = 13/109 (11%)
Query: 5 DEKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMS--FQIMHALGLPVPPELVEKGA 62
D A+IG G + C ++ + S + G+ V P G
Sbjct: 54 DAYGDKALIGAGTVLKPEQVDALARMGCQLIVTPNIHSEVIRRAVGYGMTVCP-----GC 108
Query: 63 NDAASDLIQFARDKHITILYPKD-FWCTKI-----HHPNQVEIFPSHGI 105
A ++P F I P+ + +F G+
Sbjct: 109 ATATEAFTALEAGAQALKIFPSSAFGPQYIKALKAVLPSDIAVFAVGGV 157
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 30.7 bits (69), Expect = 0.53
Identities = 9/49 (18%), Positives = 21/49 (42%)
Query: 150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNG 198
V+D+G G G L + + G++V+ + + ++ L +
Sbjct: 33 VIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRN 81
>2h00_A Methyltransferase 10 domain containing protein; structural
genomics, structural genomics consortium, SGC; HET: SAH;
2.00A {Homo sapiens} SCOP: c.66.1.54
Length = 254
Score = 30.1 bits (67), Expect = 0.85
Identities = 9/63 (14%), Positives = 23/63 (36%)
Query: 135 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG 194
D+ +DIG+G + FL EV+ + + +++ +
Sbjct: 54 DLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNN 113
Query: 195 ITN 197
+++
Sbjct: 114 LSD 116
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 30.3 bits (68), Expect = 0.88
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 140 AAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGL 176
D V+DIG G G + A ++ GL
Sbjct: 79 RERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGL 115
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 29.5 bits (66), Expect = 1.1
Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 5/115 (4%)
Query: 150 VVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSG-ITNGYFIATNATS 207
VVD GNG +A ++ G ++ K + + L I I +
Sbjct: 26 VVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQN 85
Query: 208 TFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKVFL 262
+ I ++ P+ D + +Q + +LLV G + +
Sbjct: 86 MDKYIDCPVKA-VMFNLGYLPSGDHSISTRPETTIQA--LSKAMELLVTGGIITV 137
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 29.9 bits (67), Expect = 1.2
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 144 DPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQ---LSGITNGYF 200
+ + +VD+G GNG+ L + K + ++ + V R +++ + F
Sbjct: 220 ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEF 279
Query: 201 IATNATS 207
+ NA S
Sbjct: 280 MINNALS 286
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 29.0 bits (65), Expect = 1.4
Identities = 9/57 (15%), Positives = 21/57 (36%)
Query: 149 LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNA 205
+ DIG G+G + R + E++ + + G+++ + A
Sbjct: 28 TLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGA 84
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 29.5 bits (66), Expect = 1.5
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 130 KAFPFDIDWSAAYHDPAQP----LVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTH 185
+ DI A + ++ DIG+G G + + +A + L +E + +
Sbjct: 14 QTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALA--NQGLFVYAVEPSIVMRQQ 71
Query: 186 CR 187
Sbjct: 72 AV 73
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 29.3 bits (65), Expect = 1.6
Identities = 9/80 (11%), Positives = 21/80 (26%), Gaps = 10/80 (12%)
Query: 135 DIDWSAAY---------HDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTH 185
DI+ S + + +D G+G G + +++ +
Sbjct: 59 DINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFR-EVDMVDITEDFLVQ 117
Query: 186 CRDSLQLSGITNGYFIATNA 205
+ L G +
Sbjct: 118 AKTYLGEEGKRVRNYFCCGL 137
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine,
methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A
{Escherichia coli}
Length = 369
Score = 29.1 bits (66), Expect = 1.8
Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 136 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI 195
++W+ ++ ++++ GNG F L +AR + L E+ V + ++ + I
Sbjct: 203 LEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRV--LATEIAKPSVAAAQYNIAANHI 260
Query: 196 TNGYFIATNA 205
N I A
Sbjct: 261 DNVQIIRMAA 270
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA
methyltransferase, translation, cytoplasm, rRNA
processing; HET: HIC SAM AMP; 1.50A {Thermus
thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Length = 249
Score = 28.9 bits (65), Expect = 2.0
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 134 FDIDWSAAYHDPAQPL-VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGK---LVTHCRDS 189
D PL V+D+G+G G L + R +L + ++ K V +
Sbjct: 67 LDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEV 126
Query: 190 LQLSGIT 196
L L G
Sbjct: 127 LGLKGAR 133
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 29.0 bits (64), Expect = 2.2
Identities = 9/59 (15%), Positives = 18/59 (30%)
Query: 150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST 208
V IG G + + +E+ + R ++ G+ I + T
Sbjct: 126 AVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVI 184
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 28.9 bits (64), Expect = 2.3
Identities = 17/130 (13%), Positives = 41/130 (31%), Gaps = 16/130 (12%)
Query: 135 DIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSG 194
D+ +P P ++D GNG +++ + +GL+V+ + +
Sbjct: 46 DLPRFELLFNPELP-LIDFACGNGTQTKFLSQFFPRV--IGLDVSKSALEIAAKENTAAN 102
Query: 195 ITNGYFIATNATSTFRSIVASYPGKLILVSI--QCPNPDFNRPEHRWRMVQRSLVEAVSD 252
I+ + + + + P + L +++
Sbjct: 103 ISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEK-----------RELLGQSLRI 151
Query: 253 LLVHDGKVFL 262
LL G ++L
Sbjct: 152 LLGKQGAMYL 161
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 28.9 bits (65), Expect = 2.5
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATS 207
V+D+G G G+ + AR + +V+ V R +L +G+ A+N S
Sbjct: 200 VLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGE-VFASNVFS 256
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide
phosphorylase, transferase; 1.70A {Cellulomonas uda}
PDB: 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A*
3acs_A* 3afj_A*
Length = 822
Score = 29.0 bits (64), Expect = 2.8
Identities = 19/180 (10%), Positives = 58/180 (32%), Gaps = 21/180 (11%)
Query: 75 DKHITILYPKDFWCTKIHHPNQVEIFPSHGIPDGWEPVD---IGPRSVEEITSTITKCKA 131
H + +Y + + + +F + +G++ +G + + K ++
Sbjct: 179 SPHGSAIYHRTEY---RERRDHYAVFAVNTQAEGFDTDRDTFVGAYNSLGEAAVPLKGES 235
Query: 132 FPFDIDWSAAYHDP--AQPLVVDIGSG---NGLFLLGMARKRKDLNFLGLEVNGKLVTHC 186
+ A+ P + + V + G +++LG + E
Sbjct: 236 A----NSVASGWYPIGSHSVAVSLAPGESRELVYVLGYVENPDE------EKWADDAKQV 285
Query: 187 RDSLQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSL 246
+ + + + + + + F ++ + L S+ + +R + W Q +
Sbjct: 286 VNKERAHALLSRFATSEQTDAAFAALKDYWTDLLSTYSVSSNDEKLDRMVNIWNQYQCMV 345
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 27.9 bits (62), Expect = 4.0
Identities = 7/58 (12%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 140 AAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN 197
A++ ++D+GS + + + + + + + EV +++ G+
Sbjct: 10 ASFVSQGAI-LLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKE 66
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative,
structural genomics, methyltransferase fold, PSI; 1.60A
{Bacillus subtilis} SCOP: c.66.1.20
Length = 240
Score = 27.7 bits (62), Expect = 4.4
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGK---LVTHCRDSLQLSGIT 196
+ D+G+G G L + L+ ++ K + ++LQL T
Sbjct: 74 ICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTT 123
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 27.9 bits (62), Expect = 4.7
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 150 VVDIGSGNGLFLLGMARK 167
++IG G F +A
Sbjct: 55 GLEIGCAAGAFTEKLAPH 72
>1n4q_B Geranyltransferase type-I beta subunit; protein
geranylgeranyltransferase type-I, ggtase; HET: MGM GER;
2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B*
1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B*
1tnz_B*
Length = 377
Score = 28.2 bits (62), Expect = 4.7
Identities = 11/84 (13%), Positives = 28/84 (33%), Gaps = 12/84 (14%)
Query: 59 EKGANDAASDLIQFARDKHIT------ILYPKDFWCTKIHHPNQVE-IFPSHGIPDGWEP 111
++ A + + F RD+H+ + P+ + + + D +
Sbjct: 7 DRLAGSGEGERLDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDV 66
Query: 112 VDIGPRSVEEITSTITKCKAFPFD 135
V+ ++I I + P +
Sbjct: 67 VN-----KDDIIEWIYSLQVLPTE 85
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 28.3 bits (62), Expect = 4.9
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 150 VVDIGSGNGLFLLGMARKRKDL-NFLGLEVNGKLVTHCRDSLQL 192
+VD G G+G L + L +G++++ K + L +
Sbjct: 725 LVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHV 768
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET:
SAM; 2.00A {Escherichia coli}
Length = 200
Score = 27.5 bits (60), Expect = 5.1
Identities = 6/60 (10%), Positives = 18/60 (30%)
Query: 143 HDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIA 202
+ ++D G G L + + + + +++ + + T Y
Sbjct: 46 NIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFL 105
>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A,
glycosidase, TAY-sachs disease, GM2 ganglisode, TIM
barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo
sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A*
Length = 507
Score = 27.8 bits (62), Expect = 5.7
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 9/36 (25%)
Query: 55 PELVEKGANDAAS---------DLIQFARDKHITIL 81
PEL+ KG+ + + ++I++AR + I +L
Sbjct: 197 PELMRKGSYNPVTHIYTAQDVKEVIEYARLRGIRVL 232
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Escherichia coli} SCOP: c.66.1.20
Length = 207
Score = 27.3 bits (61), Expect = 6.0
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGK---LVTHCRDSLQLSGIT 196
+D+G+G GL + ++ R + +F L+ GK + + L+L I
Sbjct: 69 FIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIE 118
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A
{Clostridium thermocellum}
Length = 811
Score = 27.8 bits (61), Expect = 6.2
Identities = 10/84 (11%), Positives = 25/84 (29%), Gaps = 8/84 (9%)
Query: 160 FLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTFRSIVASYPGK 219
F++G + + + V K + + + F + + +
Sbjct: 260 FIIGYVENKDEEKWESKGVINKKKAYE--------MIEQFNTVEKVDKAFEELKSYWNAL 311
Query: 220 LILVSIQCPNPDFNRPEHRWRMVQ 243
L ++ + NR + W Q
Sbjct: 312 LSKYFLESHDEKLNRMVNIWNQYQ 335
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 27.4 bits (60), Expect = 7.7
Identities = 5/49 (10%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Query: 150 VVDIGSGNGLFLLGMARKR-KDLNFLGLEVNGKLVTHCRDSLQLSGITN 197
V + G LL + + +G++ + + + +
Sbjct: 122 VASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAG 170
>1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer,
family 20 glycosidase, HYDR; HET: NAG IFG; 2.20A {Homo
sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A*
2gjx_B* 3lmy_A* 1o7a_A* 2gk1_B*
Length = 507
Score = 27.4 bits (61), Expect = 7.8
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 10/36 (27%)
Query: 55 PELVEKGA---------NDAASDLIQFARDKHITIL 81
PEL KG+ ND +I++AR + I +L
Sbjct: 203 PELSNKGSYSLSHVYTPNDVR-MVIEYARLRGIRVL 237
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 26.8 bits (59), Expect = 8.6
Identities = 7/48 (14%), Positives = 19/48 (39%)
Query: 150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITN 197
++D+GS + + + + + EV ++ G+T+
Sbjct: 25 LLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTS 72
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 27.0 bits (60), Expect = 10.0
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 6/35 (17%)
Query: 137 DWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDL 171
++ A V+D+ G+G +L + R+ L
Sbjct: 176 VFARART------VIDLAGGHGTYLAQVLRRHPQL 204
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.435
Gapped
Lambda K H
0.267 0.0852 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,394,693
Number of extensions: 329625
Number of successful extensions: 1059
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1027
Number of HSP's successfully gapped: 75
Length of query: 336
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 242
Effective length of database: 4,077,219
Effective search space: 986686998
Effective search space used: 986686998
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.5 bits)