RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 019743
(336 letters)
>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase
TrmB {Bacillus subtilis [TaxId: 1423]}
Length = 204
Score = 75.7 bits (185), Expect = 9e-17
Identities = 33/202 (16%), Positives = 82/202 (40%), Gaps = 13/202 (6%)
Query: 130 KAFPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDS 189
+ W+ + + P+ +++G+G G F+ GMA++ D+N++G+E+ ++
Sbjct: 14 NPADYKGKWNTVFGND-NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQK 72
Query: 190 LQLSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEA 249
++ S N + +A + PG++ V + +P + + R+ ++
Sbjct: 73 VKDSEAQNVKLLNIDADTLTDVF---EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKK 129
Query: 250 VSDLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGV 309
+++ G + ++D + + F EYG T + +
Sbjct: 130 YEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGL---------LLTYVSLDLHNSNLEGNI 180
Query: 310 RSDWEQHVIDRGAPMYRLMLSK 331
+++E+ G P+YR +
Sbjct: 181 MTEYEEKFSALGQPIYRAEVEW 202
>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase
TrmB {Streptococcus pneumoniae [TaxId: 1313]}
Length = 204
Score = 68.0 bits (165), Expect = 4e-14
Identities = 33/196 (16%), Positives = 85/196 (43%), Gaps = 13/196 (6%)
Query: 132 FPFDIDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQ 191
W + + P+ V++GSG G F+ GMA++ D+N++G+++ ++++ D +
Sbjct: 18 LEAKAKWRDLFGNDN-PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVL 76
Query: 192 LSGITNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVS 251
G+ N + + + G++ + + +P + + R+ ++ ++
Sbjct: 77 EVGVPNIKLLWVDGSDLTDYF---EDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFK 133
Query: 252 DLLVHDGKVFLQSDIEEVMLRMKQQFLEYGKGKLVLVQDECDTKTNQGGWLGENSFGVRS 311
+L +G++ ++D + F +YG + D + V +
Sbjct: 134 RILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVWLDL---------HASDFEGNVMT 184
Query: 312 DWEQHVIDRGAPMYRL 327
++EQ ++G +YR+
Sbjct: 185 EYEQKFSNKGQVIYRV 200
>d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 394
Score = 58.5 bits (141), Expect = 3e-10
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 1/128 (0%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
++P+ AIIGG + +K + L + D LI G +++ + ALG V L+E+ +
Sbjct: 186 DRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEEDKIEL 245
Query: 66 ASDLIQFARDKHITILYPKDFWCT-KIHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEITS 124
A ++ A++K + P D + + ++ P IP W +DIGP++ E
Sbjct: 246 AKSFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRD 305
Query: 125 TITKCKAF 132
I + K
Sbjct: 306 VIRESKLV 313
>d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima
[TaxId: 2336]}
Length = 398
Score = 49.7 bits (118), Expect = 2e-07
Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 2/127 (1%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHALGLPVPPELVEKGANDA 65
EKPY ++GG + +K + L + D ++ G M F + ALG V VE+ D
Sbjct: 185 EKPYVVVLGGAKVSDKIGVITNLMEKADRILIGGAMMFTFLKALGKEVGSSRVEEDKIDL 244
Query: 66 ASDLIQFARDKHITILYPKDFWCTKI--HHPNQVEIFPSHGIPDGWEPVDIGPRSVEEIT 123
A +L++ A++K + I+ P D + + + GIP+GW +DIGP ++E
Sbjct: 245 AKELVEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFK 304
Query: 124 STITKCK 130
++ K
Sbjct: 305 QKLSDAK 311
>d1ltka_ c.86.1.1 (A:) Phosphoglycerate kinase {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 417
Score = 46.2 bits (109), Expect = 3e-06
Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 3/130 (2%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQ-IMHALGLPVPPELVEKGAND 64
++P AI+GG + +K + L + D +I G M++ + + L ++ +
Sbjct: 206 QRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGGGMAYTFKKVLNNMKIGTSLFDEAGSK 265
Query: 65 AASDLIQFARDKHITILYPKDFWCTK--IHHPNQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
++++ A+ K++ I P DF ++ N + GIPD W +D GP+S+E
Sbjct: 266 IVGEIMEKAKAKNVQIFLPVDFKIADNFDNNANTKFVTDEEGIPDNWMGLDAGPKSIENY 325
Query: 123 TSTITKCKAF 132
I K
Sbjct: 326 KDVILTSKTV 335
>d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 415
Score = 45.9 bits (108), Expect = 4e-06
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 3/128 (2%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQ-IMHALGLPVPPELVEKGAND 64
+P+ AI+GG + +K + L + D +I G M+F + + +K +
Sbjct: 202 TRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGGGMAFTFKKVLENTEIGDSIFDKAGAE 261
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIH--HPNQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
L++ A+ K + ++ P DF N + GIP GW+ +D GP S +
Sbjct: 262 IVPKLMEKAKAKGVEVVLPVDFIIADAFSADANTKTVTDKEGIPAGWQGLDNGPESRKLF 321
Query: 123 TSTITKCK 130
+T+ K K
Sbjct: 322 AATVAKAK 329
>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing
protein METT10D {Human (Homo sapiens) [TaxId: 9606]}
Length = 250
Score = 34.8 bits (79), Expect = 0.010
Identities = 15/147 (10%), Positives = 37/147 (25%), Gaps = 2/147 (1%)
Query: 143 HDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFI- 201
+DIG+G + FL EV+ + + +++ + +++ +
Sbjct: 58 DKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVV 117
Query: 202 -ATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLVHDGKV 260
T ++ P S ++
Sbjct: 118 KVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEI 177
Query: 261 FLQSDIEEVMLRMKQQFLEYGKGKLVL 287
+ E + R+ L+ K
Sbjct: 178 MAEGGELEFVKRIIHDSLQLKKRLRWY 204
>d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 413
Score = 32.8 bits (74), Expect = 0.047
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 3/128 (2%)
Query: 6 EKPYAAIIGGGNLCNKAAALHFLASRCDGLIFVGLMSFQIMHAL-GLPVPPELVEKGAND 64
E+P+ AI+GG + +K ++ + + + +I G M+F + L + + L ++
Sbjct: 201 ERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEAGKK 260
Query: 65 AASDLIQFARDKHITILYPKDFWCTKIH--HPNQVEIFPSHGIPDGWEPVDIGPRSVEEI 122
+L+ A + I P DF + + GIP GW +D GP+S +
Sbjct: 261 IVKNLMSKAAANGVKITLPVDFVTADKFDEQAKIGQATVASGIPAGWMGLDCGPKSSAKY 320
Query: 123 TSTITKCK 130
+ + + K
Sbjct: 321 SEAVARAK 328
>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia
coli [TaxId: 562]}
Length = 268
Score = 31.5 bits (70), Expect = 0.12
Identities = 11/52 (21%), Positives = 19/52 (36%)
Query: 136 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCR 187
+ D V+DIG G G + A ++ GL+V+ +
Sbjct: 74 VAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAA 125
>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Human (Homo sapiens) [TaxId:
9606]}
Length = 328
Score = 28.7 bits (63), Expect = 1.1
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQ 191
VD+GSG G +L +A + G+E + +
Sbjct: 155 FVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDR 196
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 406
Score = 27.7 bits (61), Expect = 2.2
Identities = 8/51 (15%), Positives = 16/51 (31%)
Query: 150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYF 200
+D+GSG G ++ A + G E+ + +
Sbjct: 220 FMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLY 270
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 292
Score = 27.6 bits (60), Expect = 2.3
Identities = 10/116 (8%), Positives = 39/116 (33%), Gaps = 4/116 (3%)
Query: 150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTF 209
V+D+ G G+ + + + + ++ + K++ + + + +
Sbjct: 60 VLDVACGTGVDSIMLV--EEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANW 117
Query: 210 RSIVASYPGKLILVSIQCPNPDFN--RPEHRWRMVQRSLVEAVSDLLVHDGKVFLQ 263
++ P ++ C F + R ++ ++ ++ G + +
Sbjct: 118 LTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173
>d2cw9a1 d.17.4.13 (A:270-451) Translocase of inner mitochondrial
membrane TIMM44 (TIM44), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 182
Score = 26.9 bits (59), Expect = 3.0
Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Query: 244 RSLVEAVSDLLVHDGKVFLQSDIEEVMLRMKQ 275
R+L + V+DLL G +F ++++ EV+ + +
Sbjct: 8 RALTDKVTDLL---GGLFSKTEMSEVLTEILR 36
>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia
carotovora [TaxId: 554]}
Length = 225
Score = 26.0 bits (56), Expect = 5.2
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 150 VVDIGSGNGLFLLGMARKRKDL 171
++++GS G F + D+
Sbjct: 24 LLELGSFKGDFTSRLQEHFNDI 45
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX
ATP-binding domain {Thermus thermophilus [TaxId: 274]}
Length = 192
Score = 26.1 bits (56), Expect = 5.5
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 40 LMSFQIMHALGLPVPPELVEKGANDA 65
+ + GLP P + +A
Sbjct: 2 WATSVALAKAGLPQPKTALATDREEA 27
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus
halodurans [TaxId: 86665]}
Length = 231
Score = 26.1 bits (56), Expect = 5.7
Identities = 12/82 (14%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 150 VVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATSTF 209
V+D+ +G G A K + + ++ ++ R ++ +G ++ +A
Sbjct: 19 VLDVATGGGHVANAFAPFVKKV--VAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP 76
Query: 210 RSIVASYPGKLILVSIQCPNPD 231
+ + + + PNP
Sbjct: 77 FTDERFHIVTCRIAAHHFPNPA 98
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase)
{Azospirillum irakense [TaxId: 34011]}
Length = 408
Score = 26.1 bits (57), Expect = 7.0
Identities = 8/45 (17%), Positives = 11/45 (24%)
Query: 106 PDGWEPVDIGPRSVEEITSTITKCKAFPFDIDWSAAYHDPAQPLV 150
P W + I S T + + A P Q
Sbjct: 74 PAAWYTSKAARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYT 118
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 25.9 bits (56), Expect = 7.7
Identities = 19/146 (13%), Positives = 38/146 (26%), Gaps = 27/146 (18%)
Query: 150 VVDIGSGNGLFLLGMARK-RKDLNFLGLEVNGKLVTHCRDSLQLSGITNGYFIATNATST 208
V++ GSG+G L +++ + EV + + + +
Sbjct: 102 VLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN 161
Query: 209 FRSIVASYPGKLILVSIQCPNPDFNR-------PEHRWRMVQRSL--------------- 246
I G + + F+ P + L
Sbjct: 162 VDFIHKDISG----ATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNITQ 217
Query: 247 VEAVSDLLVHDGKVFLQSDIEEVMLR 272
V + D + I EV++R
Sbjct: 218 VIELLDGIRTCELALSCEKISEVIVR 243
>d1sh0a_ e.8.1.4 (A:) Viral RNA polymerase {Norwalk virus [TaxId:
11983]}
Length = 502
Score = 25.7 bits (56), Expect = 8.7
Identities = 9/77 (11%), Positives = 23/77 (29%), Gaps = 16/77 (20%)
Query: 32 CDGLIFVGLMSFQIMHALGLPVPPELVEKGANDAASDLIQFARDKHITILYPKDFWCTKI 91
D + ++ A +++F+ + H+ + +D +
Sbjct: 236 ADYSRWDSTQQRAVLAAA----------------LEIMVKFSSEPHLAQVVAEDLLSPSV 279
Query: 92 HHPNQVEIFPSHGIPDG 108
I + G+P G
Sbjct: 280 VDVGDFTISINEGLPSG 296
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
[TaxId: 562]}
Length = 245
Score = 25.7 bits (55), Expect = 8.9
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 150 VVDIGSGNGLFLLGMARK 167
++D+GSG+G L AR
Sbjct: 37 ILDLGSGSGEMLCTWARD 54
>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 285
Score = 25.5 bits (55), Expect = 9.0
Identities = 19/147 (12%), Positives = 48/147 (32%), Gaps = 4/147 (2%)
Query: 136 IDWSAAYHDPAQPLVVDIGSGNGLFLLGMARKRKDLNFLGLEVNGKLVTHCRDSLQLSGI 195
I P V+ IG G+G L + + + + E++ ++ + L I
Sbjct: 68 IANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAI 127
Query: 196 TNGYFIATNATSTFRSIVASYPGKLILVSIQCPNPDFNRPEHRWRMVQRSLVEAVSDLLV 255
T + ++ +P + + S + + L
Sbjct: 128 GYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPM----GPAESLFKESYYQLMKTALK 183
Query: 256 HDGKVFLQSDIEEVMLRMKQQFLEYGK 282
DG + Q + + + L + ++ ++ +
Sbjct: 184 EDGVLCCQGECQWLHLDLIKEMRQFCQ 210
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA,
C-domain {Enterococcus faecium [TaxId: 1352]}
Length = 211
Score = 25.5 bits (54), Expect = 9.1
Identities = 6/70 (8%), Positives = 15/70 (21%), Gaps = 1/70 (1%)
Query: 41 MSFQIMHALGLPVPP-ELVEKGANDAASDLIQFARDKHITILYPKDFWCTKIHHPNQVEI 99
+++ + G+ P ++ K A+ K I
Sbjct: 4 LTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVNSADELDYAI 63
Query: 100 FPSHGIPDGW 109
+
Sbjct: 64 ESARQYDSKI 73
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.435
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,322,903
Number of extensions: 62549
Number of successful extensions: 195
Number of sequences better than 10.0: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 35
Length of query: 336
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 250
Effective length of database: 1,226,816
Effective search space: 306704000
Effective search space used: 306704000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.9 bits)