BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019746
         (336 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9FLU1|BIN4_ARATH DNA-binding protein BIN4 OS=Arabidopsis thaliana GN=BIN4 PE=1 SV=2
          Length = 454

 Score =  207 bits (528), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 98/142 (69%), Positives = 119/142 (83%), Gaps = 3/142 (2%)

Query: 158 STSTLPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIY 217
           S+S LPLV+SEK+ RTK LVECEG+S+DLSGDMGAVGR++V  T     +M+LDLKGTIY
Sbjct: 271 SSSRLPLVLSEKVNRTKVLVECEGDSIDLSGDMGAVGRVVVSDT---TGDMYLDLKGTIY 327

Query: 218 KTTLVPSRTFCIVSFGHSEAKIEAIMNDFIQLKPQSNVYEAETMVEGTLDGFLFDSEDES 277
           K+T++PSRTFC+V+ G +EAKIEAIMNDFIQL PQSNVYEAETMVEGTL+GF F+S+DES
Sbjct: 328 KSTIIPSRTFCVVNVGQTEAKIEAIMNDFIQLIPQSNVYEAETMVEGTLEGFTFESDDES 387

Query: 278 DKLAKAMPHQIDQNDGIEEQTN 299
           +K AK      DQ+ G EE+TN
Sbjct: 388 NKNAKTAVKPADQSVGTEEETN 409



 Score = 34.7 bits (78), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 13/17 (76%), Positives = 15/17 (88%)

Query: 2  SGSREESPDWLRSFQAP 18
          S SRE SPDWLRS++AP
Sbjct: 3  SSSREGSPDWLRSYEAP 19


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.306    0.124    0.340 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,771,743
Number of Sequences: 539616
Number of extensions: 5169153
Number of successful extensions: 24274
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 444
Number of HSP's that attempted gapping in prelim test: 21599
Number of HSP's gapped (non-prelim): 2112
length of query: 336
length of database: 191,569,459
effective HSP length: 118
effective length of query: 218
effective length of database: 127,894,771
effective search space: 27881060078
effective search space used: 27881060078
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 61 (28.1 bits)