Query 019746
Match_columns 336
No_of_seqs 32 out of 34
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 04:13:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019746.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019746hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06764 hypothetical protein; 76.2 3 6.5E-05 35.5 3.3 65 153-219 24-97 (105)
2 PF08097 Toxin_26: Conotoxin T 61.9 2.5 5.5E-05 23.5 -0.0 10 308-317 2-11 (11)
3 PF09292 Neil1-DNA_bind: Endon 34.4 17 0.00038 26.6 0.6 14 10-23 7-20 (39)
4 COG1465 Predicted alternative 31.7 87 0.0019 31.9 5.1 74 154-235 256-341 (376)
5 PF08669 GCV_T_C: Glycine clea 31.3 60 0.0013 25.1 3.2 31 192-223 64-94 (95)
6 PF01959 DHQS: 3-dehydroquinat 31.3 98 0.0021 31.5 5.4 64 164-234 246-318 (354)
7 COG1254 AcyP Acylphosphatases 26.7 30 0.00065 28.5 0.9 36 206-245 26-61 (92)
8 smart00683 DM16 Repeats in sea 26.3 39 0.00085 25.9 1.4 20 181-200 8-27 (55)
9 PRK02290 3-dehydroquinate synt 22.3 1.6E+02 0.0035 29.9 5.1 63 164-233 236-307 (344)
10 PF13344 Hydrolase_6: Haloacid 17.9 65 0.0014 25.8 1.1 18 208-225 1-19 (101)
No 1
>PRK06764 hypothetical protein; Provisional
Probab=76.22 E-value=3 Score=35.46 Aligned_cols=65 Identities=23% Similarity=0.333 Sum_probs=44.7
Q ss_pred hccCCCCcccceeeccccccceeeeec------cCCccc-cCCCccccc--eEEecCCCCCCcceeEeecceeeee
Q 019746 153 SMLNVSTSTLPLVMSEKLQRTKALVEC------EGESVD-LSGDMGAVG--RILVPGTAEGNHEMFLDLKGTIYKT 219 (336)
Q Consensus 153 ~~~~vs~~~lPLvlp~kv~rtK~LvE~------eG~slD-LsGDsGAVG--Rl~V~~~~~~~~~L~LDLKG~iY~a 219 (336)
-+|+||+...|-+--+++|.-.+.+-. -|.+|| ||||.-||- ...+.=... ...++-..|+||+-
T Consensus 24 lepsvs~ae~~q~~~enfn~i~v~mn~~e~y~lsgrsidilsgdkeaiqlnkyti~f~kp--g~yvirvngciy~d 97 (105)
T PRK06764 24 LEPSVSAAESQQVKEENFNAIDVSMNINELYVLSGRSIDVLSGDKEAIQLNKYTIRFSKP--GKYVIRVNGCIYND 97 (105)
T ss_pred eccccchhcchhhhhcccceEEEEEeccceEEEcCceeeeecCChhheEeeeeEEEecCC--ccEEEEEccEEeee
Confidence 368899888898888888855554443 378999 799999974 223322111 35667788999974
No 2
>PF08097 Toxin_26: Conotoxin T-superfamily; InterPro: IPR012631 This family consists of the T-superfamily of conotoxins. Eight different T-superfamily peptides from five Conus species were identified. These peptides share a consensus signal sequence, and a conserved arrangement of cysteine residues. T-superfamily peptides were found expressed in venom ducts of all major feeding types of Conus, suggesting that the T-superfamily is a large and diverse group of peptides, widely distributed in the 500 different Conus species [].; GO: 0005576 extracellular region
Probab=61.94 E-value=2.5 Score=23.54 Aligned_cols=10 Identities=50% Similarity=1.275 Sum_probs=8.9
Q ss_pred Cccchhhhhh
Q 019746 308 PCRKERYECW 317 (336)
Q Consensus 308 ~cr~~r~~~~ 317 (336)
-|.+-||-||
T Consensus 2 ccpviryccw 11 (11)
T PF08097_consen 2 CCPVIRYCCW 11 (11)
T ss_pred CcchhheecC
Confidence 4889999999
No 3
>PF09292 Neil1-DNA_bind: Endonuclease VIII-like 1, DNA bind; InterPro: IPR015371 This domain is predominantly found in Endonuclease VIII-like 1 proteins and adopts a glucocorticoid receptor-like fold. Structural analysis reveals a zincless finger motif that is required for glycosylase activity []. ; PDB: 1TDH_A.
Probab=34.40 E-value=17 Score=26.58 Aligned_cols=14 Identities=29% Similarity=0.790 Sum_probs=8.7
Q ss_pred cchhccccCcccee
Q 019746 10 DWLRSFQAPTHSVL 23 (336)
Q Consensus 10 dwlr~fq~pt~s~~ 23 (336)
.||+||++|.-+.|
T Consensus 7 ~WLqCY~v~gM~sl 20 (39)
T PF09292_consen 7 AWLQCYSVPGMKSL 20 (39)
T ss_dssp HH-SSTT-TT-EEE
T ss_pred HHHHHhcccccccc
Confidence 59999999985544
No 4
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=31.66 E-value=87 Score=31.94 Aligned_cols=74 Identities=23% Similarity=0.393 Sum_probs=48.5
Q ss_pred ccCCCCcccc--eeeccccccceeeeecc-CC---ccccCCC--ccccceEEecCCCCCCcceeE---eecceeeeeeee
Q 019746 154 MLNVSTSTLP--LVMSEKLQRTKALVECE-GE---SVDLSGD--MGAVGRILVPGTAEGNHEMFL---DLKGTIYKTTLV 222 (336)
Q Consensus 154 ~~~vs~~~lP--Lvlp~kv~rtK~LvE~e-G~---slDLsGD--sGAVGRl~V~~~~~~~~~L~L---DLKG~iY~atIV 222 (336)
-++|.+|.+- |.+|- ++|+.|.||. |+ -+|+.|- .+.|||+-|+. +.|.| -..|..-. +|+
T Consensus 256 PFRVNAG~VhaYi~vPg--~kTkYLaEL~aGDeV~iVD~dGr~R~aiVGRvKIEr-----RPl~lIeAey~g~~i~-tiL 327 (376)
T COG1465 256 PFRVNAGAVHAYIRVPG--GKTKYLAELKAGDEVLIVDFDGRTRSAIVGRVKIER-----RPLMLIEAEYEGVEIS-TIL 327 (376)
T ss_pred ceeecccceeEEEEcCC--CceEEhhhhcCCCeEEEEecCCceeEEEEEEEEeec-----CceEEEEEEecCcEEE-EEe
Confidence 3456665443 33444 6999999999 54 6788886 47899999996 67766 44455443 344
Q ss_pred cCc-cEEEEeecCC
Q 019746 223 PSR-TFCIVSFGHS 235 (336)
Q Consensus 223 Ps~-T~~VVsvg~t 235 (336)
--+ |+-+|+-..+
T Consensus 328 QNAETIkLv~~dG~ 341 (376)
T COG1465 328 QNAETIKLVNPDGE 341 (376)
T ss_pred ccceeEEEEcCCCc
Confidence 444 7777665444
No 5
>PF08669 GCV_T_C: Glycine cleavage T-protein C-terminal barrel domain; InterPro: IPR013977 This entry shows glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase. ; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 3GIR_A 1WOO_A 1WOS_A 1WOR_A ....
Probab=31.32 E-value=60 Score=25.06 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=20.9
Q ss_pred ccceEEecCCCCCCcceeEeecceeeeeeeec
Q 019746 192 AVGRILVPGTAEGNHEMFLDLKGTIYKTTLVP 223 (336)
Q Consensus 192 AVGRl~V~~~~~~~~~L~LDLKG~iY~atIVP 223 (336)
|+|.|-...... +..|.+++.|..|.|+|++
T Consensus 64 ala~v~~~~~~~-g~~l~v~~~g~~~~a~v~~ 94 (95)
T PF08669_consen 64 ALAYVDREYAEP-GTELEVEIRGKRVPATVVK 94 (95)
T ss_dssp EEEEEEGGGGST-TSEEEEEETTEEEEEEEE-
T ss_pred EEEEECHHHcCC-CCEEEEEECCEEEEEEEeC
Confidence 345554333233 3689999999999999986
No 6
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=31.29 E-value=98 Score=31.47 Aligned_cols=64 Identities=25% Similarity=0.397 Sum_probs=45.8
Q ss_pred eeeccccccceeeeecc-CC---ccccCCC--ccccceEEecCCCCCCcceeE---eecceeeeeeeecCccEEEEeecC
Q 019746 164 LVMSEKLQRTKALVECE-GE---SVDLSGD--MGAVGRILVPGTAEGNHEMFL---DLKGTIYKTTLVPSRTFCIVSFGH 234 (336)
Q Consensus 164 Lvlp~kv~rtK~LvE~e-G~---slDLsGD--sGAVGRl~V~~~~~~~~~L~L---DLKG~iY~atIVPs~T~~VVsvg~ 234 (336)
+.+|. +||+.|-||. |+ .+|-.|. ...|||+-|+. ++|.| .--|..++.-+-=.-|+.+|+-+.
T Consensus 246 v~~pg--~kT~YLSEL~sG~~VlvVd~~G~tR~~~VGRvKIE~-----RPLllIeA~~~g~~~svilQnaetIRlv~p~G 318 (354)
T PF01959_consen 246 VLMPG--GKTRYLSELRSGDEVLVVDADGRTRTAIVGRVKIER-----RPLLLIEAEADGKRISVILQNAETIRLVGPDG 318 (354)
T ss_pred EEcCC--CceeehhhhcCCCEEEEEeCCCCEEEEEeeEEEEee-----cceEEEEEEeCCeEEEEEEecCcEEEEECCCC
Confidence 44555 6999999999 44 7888888 46799999996 77766 456766655444445888886443
No 7
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=26.71 E-value=30 Score=28.49 Aligned_cols=36 Identities=25% Similarity=0.320 Sum_probs=29.8
Q ss_pred cceeEeecceeeeeeeecCccEEEEeecCCchhhhheecc
Q 019746 206 HEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMND 245 (336)
Q Consensus 206 ~~L~LDLKG~iY~atIVPs~T~~VVsvg~tEAKVEai~nd 245 (336)
.++.|+|+|.++| +|-+++=||..|.+++ |+.+.+.
T Consensus 26 ~A~~lgl~G~V~N---~~DGsVeiva~G~~~~-v~~~~~~ 61 (92)
T COG1254 26 EALRLGLTGWVKN---LDDGSVEIVAEGPDEA-VEKFIEW 61 (92)
T ss_pred HHHHCCCEEEEEE---CCCCeEEEEEEcCHHH-HHHHHHH
Confidence 5788999999887 6778999999999999 7765543
No 8
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=26.34 E-value=39 Score=25.94 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=17.4
Q ss_pred CCccccCCCccccceEEecC
Q 019746 181 GESVDLSGDMGAVGRILVPG 200 (336)
Q Consensus 181 G~slDLsGDsGAVGRl~V~~ 200 (336)
.+--|++||.|-.|+|+|.+
T Consensus 8 ~~Ved~kgn~G~~G~l~VTN 27 (55)
T smart00683 8 NGVEDTKGNNGDLGVFFVTN 27 (55)
T ss_pred cCeEecCCCCCCeeEEEEEe
Confidence 35679999999999999976
No 9
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=22.35 E-value=1.6e+02 Score=29.88 Aligned_cols=63 Identities=25% Similarity=0.430 Sum_probs=44.2
Q ss_pred eeeccccccceeeeecc-CC---ccccCCCc--cccceEEecCCCCCCcceeE---eecceeeeeeeecCccEEEEeec
Q 019746 164 LVMSEKLQRTKALVECE-GE---SVDLSGDM--GAVGRILVPGTAEGNHEMFL---DLKGTIYKTTLVPSRTFCIVSFG 233 (336)
Q Consensus 164 Lvlp~kv~rtK~LvE~e-G~---slDLsGDs--GAVGRl~V~~~~~~~~~L~L---DLKG~iY~atIVPs~T~~VVsvg 233 (336)
+.+|. +||+.|-||. |+ .+|-.|.+ ..|||+-|+. ++|.| .-.|..++.-+==.-|+.+|+-+
T Consensus 236 v~~pg--g~T~YLsEL~sG~eVlvVd~~G~tR~~~VGRvKIE~-----RPL~lIeAe~~g~~~~viLQnaetIrlv~~d 307 (344)
T PRK02290 236 VRVPG--DKTRYLSELRSGDEVLVVDADGNTREAIVGRVKIEK-----RPLLLIEAEYGGKRIRTILQNAETIRLVTPD 307 (344)
T ss_pred EEcCC--CcchhhHhhcCCCEEEEEeCCCCEEEEEeeEEEEee-----ccEEEEEEEeCCeEEEEEEecCcEEEEECCC
Confidence 34444 6999999999 43 78999986 5799999996 77766 34576665444333488888554
No 10
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=17.88 E-value=65 Score=25.81 Aligned_cols=18 Identities=28% Similarity=0.767 Sum_probs=13.6
Q ss_pred eeEeecceeee-eeeecCc
Q 019746 208 MFLDLKGTIYK-TTLVPSR 225 (336)
Q Consensus 208 L~LDLKG~iY~-atIVPs~ 225 (336)
+.+||-||+|+ .+.+|.+
T Consensus 1 ~l~D~dGvl~~g~~~ipga 19 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEPIPGA 19 (101)
T ss_dssp EEEESTTTSEETTEE-TTH
T ss_pred CEEeCccEeEeCCCcCcCH
Confidence 47899999999 4677764
Done!