Query 019746
Match_columns 336
No_of_seqs 32 out of 34
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 06:29:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019746.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019746hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v5va1 b.44.2.1 (A:313-401) G 23.6 37 0.0027 23.8 3.8 33 192-225 44-76 (89)
2 d1scza_ c.43.1.1 (A:) Dihydrol 18.0 9.2 0.00067 32.1 -0.8 60 184-257 142-208 (233)
3 d1tdha3 g.39.1.8 (A:247-290) E 17.7 17 0.0013 24.5 0.7 14 10-23 12-25 (44)
4 d1wosa1 b.44.2.1 (A:279-361) G 16.1 66 0.0048 21.8 3.6 23 203-225 54-76 (83)
5 d1vloa1 b.44.2.1 (A:278-367) G 15.8 76 0.0055 22.0 4.0 21 205-225 58-78 (90)
6 d1xe1a_ b.43.3.1 (A:) Hypothet 15.3 42 0.003 23.9 2.4 29 214-245 28-56 (91)
7 d1pj5a1 b.44.2.1 (A:743-830) N 14.8 97 0.0071 21.5 4.3 21 205-225 57-77 (88)
8 d2bk0a1 d.129.3.1 (A:2-154) Ma 11.1 61 0.0045 25.1 2.4 27 162-200 30-56 (153)
9 d1wfja_ b.7.1.2 (A:) C2 domain 9.8 1.3E+02 0.0092 21.2 3.7 13 187-199 3-15 (136)
10 d1p5dx4 d.129.2.1 (X:368-463) 9.3 84 0.0061 22.3 2.4 41 206-248 40-83 (96)
No 1
>d1v5va1 b.44.2.1 (A:313-401) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]}
Probab=23.65 E-value=37 Score=23.84 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=23.5
Q ss_pred ccceEEecCCCCCCcceeEeecceeeeeeeecCc
Q 019746 192 AVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSR 225 (336)
Q Consensus 192 AVGRl~V~~~~~~~~~L~LDLKG~iY~atIVPs~ 225 (336)
|.|.|-...+..+ ..|.+++.|..|.|+|+..+
T Consensus 44 ala~v~~~~~~~g-~~v~v~i~g~~~~a~v~~~P 76 (89)
T d1v5va1 44 GIAFVKEEYAKPG-IEIEVEIRGQRKKAVTVTPP 76 (89)
T ss_dssp EEEEEEGGGCSTT-CEEEEEETTEEEEEEEECSC
T ss_pred EEEEECHHHcCCC-CEEEEEECCeEEEEEEECCC
Confidence 3455554433333 68899999999999999876
No 2
>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}
Probab=17.97 E-value=9.2 Score=32.10 Aligned_cols=60 Identities=15% Similarity=0.312 Sum_probs=40.7
Q ss_pred cccCCCccccceEEecCCCCCCcceeEeecceeeeeeeecCccEEEEeecCCchhhhheecc-------ceeeccCchhh
Q 019746 184 VDLSGDMGAVGRILVPGTAEGNHEMFLDLKGTIYKTTLVPSRTFCIVSFGHSEAKIEAIMND-------FIQLKPQSNVY 256 (336)
Q Consensus 184 lDLsGDsGAVGRl~V~~~~~~~~~L~LDLKG~iY~atIVPs~T~~VVsvg~tEAKVEai~nd-------FiqLr~~~n~~ 256 (336)
=||+| |-+.|.+ |-.-|+.|-+-|++-+..|++++|....+...+-.+ .+-|.+++++.
T Consensus 142 ~d~~g-----gTfTISN---------lG~~g~~~~tpii~ppq~aIl~vG~i~~~pv~~~g~i~~r~~~~lsls~DHRvi 207 (233)
T d1scza_ 142 EDLTG-----GNFTITN---------GGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLI 207 (233)
T ss_dssp HHHSC-----CSEEEEE---------GGGGTCCCCCCCCCTTCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTTC
T ss_pred HHhCC-----CcEEEEc---------CccccceeeeeecCCCCceEEecccceeeccccCCeEEEEEEeEEEEEhhcchh
Confidence 36666 6677775 334688898999999999999999987765322111 24556666654
Q ss_pred h
Q 019746 257 E 257 (336)
Q Consensus 257 e 257 (336)
+
T Consensus 208 D 208 (233)
T d1scza_ 208 D 208 (233)
T ss_dssp C
T ss_pred c
Confidence 3
No 3
>d1tdha3 g.39.1.8 (A:247-290) Endonuclease VIII-like 1 (NEIL1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.71 E-value=17 Score=24.47 Aligned_cols=14 Identities=43% Similarity=0.869 Sum_probs=11.3
Q ss_pred cchhccccCcccee
Q 019746 10 DWLRSFQAPTHSVL 23 (336)
Q Consensus 10 dwlr~fq~pt~s~~ 23 (336)
.|||||-+|--+.|
T Consensus 12 ~WLqCY~~pgM~sL 25 (44)
T d1tdha3 12 AWLRCYGMPGMSSL 25 (44)
T ss_dssp HHCSSTTCTTCEEE
T ss_pred HHHHHHcCCchhhh
Confidence 59999999985544
No 4
>d1wosa1 b.44.2.1 (A:279-361) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]}
Probab=16.08 E-value=66 Score=21.77 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=18.2
Q ss_pred CCCcceeEeecceeeeeeeecCc
Q 019746 203 EGNHEMFLDLKGTIYKTTLVPSR 225 (336)
Q Consensus 203 ~~~~~L~LDLKG~iY~atIVPs~ 225 (336)
.+..-+.++..|..|.|+|+..|
T Consensus 54 ~~~~~~~~~~~g~~~~a~v~~~P 76 (83)
T d1wosa1 54 IGDQLGVVFPGGKLVEALVVKKP 76 (83)
T ss_dssp TTCEEEEEETTTEEEEEEEECSC
T ss_pred CCCeEEEEEECCeEEEEEEECCC
Confidence 34456777889999999999876
No 5
>d1vloa1 b.44.2.1 (A:278-367) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]}
Probab=15.82 E-value=76 Score=22.03 Aligned_cols=21 Identities=0% Similarity=0.091 Sum_probs=18.8
Q ss_pred CcceeEeecceeeeeeeecCc
Q 019746 205 NHEMFLDLKGTIYKTTLVPSR 225 (336)
Q Consensus 205 ~~~L~LDLKG~iY~atIVPs~ 225 (336)
+..+.+++.|..|.|+|++.+
T Consensus 58 g~~~~v~v~g~~~~a~v~~~P 78 (90)
T d1vloa1 58 GETAIVQIRNREMPVKVTKPV 78 (90)
T ss_dssp CSEEEEEETTEEEEEEEECSC
T ss_pred CCEEEEEECCEEEEEEEECCC
Confidence 467999999999999999877
No 6
>d1xe1a_ b.43.3.1 (A:) Hypothetical protein PF0907 {Pyrococcus furiosus [TaxId: 2261]}
Probab=15.27 E-value=42 Score=23.92 Aligned_cols=29 Identities=17% Similarity=0.031 Sum_probs=18.0
Q ss_pred ceeeeeeeecCccEEEEeecCCchhhhheecc
Q 019746 214 GTIYKTTLVPSRTFCIVSFGHSEAKIEAIMND 245 (336)
Q Consensus 214 G~iY~atIVPs~T~~VVsvg~tEAKVEai~nd 245 (336)
|++..++|-+.-+ |.+.+.+++|.+|...
T Consensus 28 GtV~sG~i~~Gd~---v~~~p~~~~VksIq~~ 56 (91)
T d1xe1a_ 28 GTVESGMIGVGFK---VKGPSGIGGIVRIERN 56 (91)
T ss_dssp EEEEEEEEETTCE---EECSSCEEEEEEEEET
T ss_pred EEEeeCCcCCCCE---EEECCccEEEEEEEEc
Confidence 4555555555544 3456778888887653
No 7
>d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, C-terminal domain {Arthrobacter globiformis [TaxId: 1665]}
Probab=14.76 E-value=97 Score=21.46 Aligned_cols=21 Identities=10% Similarity=0.124 Sum_probs=18.3
Q ss_pred CcceeEeecceeeeeeeecCc
Q 019746 205 NHEMFLDLKGTIYKTTLVPSR 225 (336)
Q Consensus 205 ~~~L~LDLKG~iY~atIVPs~ 225 (336)
...|.+++-|..|.|+|+..+
T Consensus 57 g~~~~V~~~g~~~~a~v~~~P 77 (88)
T d1pj5a1 57 GDSVDIEYFGRRITATVTEDP 77 (88)
T ss_dssp TCEEEEEETTEEEEEEEECSC
T ss_pred CCEEEEEECCEEEEEEEEccC
Confidence 478899999999999999865
No 8
>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]}
Probab=11.10 E-value=61 Score=25.11 Aligned_cols=27 Identities=30% Similarity=0.539 Sum_probs=16.3
Q ss_pred cceeeccccccceeeeeccCCccccCCCccccceEEecC
Q 019746 162 LPLVMSEKLQRTKALVECEGESVDLSGDMGAVGRILVPG 200 (336)
Q Consensus 162 lPLvlp~kv~rtK~LvE~eG~slDLsGDsGAVGRl~V~~ 200 (336)
+|=++|..+ .+++++|| |.+|.|..-.
T Consensus 30 ~Pk~~P~~i-----------~sveveGd-G~~GsIr~~~ 56 (153)
T d2bk0a1 30 LPKAAPGAY-----------KSVEIKGD-GGPGTLKIIT 56 (153)
T ss_dssp HHHHCGGGC-----------SEEEEESS-SSTTCEEEEE
T ss_pred cccccccee-----------eEEEEECC-CCCCeEEEEE
Confidence 466666644 34556677 7777765543
No 9
>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=9.76 E-value=1.3e+02 Score=21.20 Aligned_cols=13 Identities=38% Similarity=0.534 Sum_probs=9.3
Q ss_pred CCCccccceEEec
Q 019746 187 SGDMGAVGRILVP 199 (336)
Q Consensus 187 sGDsGAVGRl~V~ 199 (336)
+|-.|.+|.|.|.
T Consensus 3 ~~~~~p~G~L~V~ 15 (136)
T d1wfja_ 3 SGSSGPHGTLEVV 15 (136)
T ss_dssp CCCCCCEEEEEEE
T ss_pred CCCCCCcEEEEEE
Confidence 4667788877764
No 10
>d1p5dx4 d.129.2.1 (X:368-463) Phosphomannomutase/phosphoglucomutase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=9.27 E-value=84 Score=22.33 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=29.3
Q ss_pred cceeEeecceeeeeeeecCcc--EEEEee-cCCchhhhheecccee
Q 019746 206 HEMFLDLKGTIYKTTLVPSRT--FCIVSF-GHSEAKIEAIMNDFIQ 248 (336)
Q Consensus 206 ~~L~LDLKG~iY~atIVPs~T--~~VVsv-g~tEAKVEai~ndFiq 248 (336)
.||.+++.. .-.-|.||+| +++|.+ +.++++.+.|.+.|..
T Consensus 40 DGvrv~~~d--gW~liR~SnTEP~lri~~Ea~s~~~~~~l~~~~~~ 83 (96)
T d1p5dx4 40 DGVRVDYPK--GWGLVRASNTTPVLVLRFEADTEEELERIKTVFRN 83 (96)
T ss_dssp SSEEEEETT--EEEEEEECSSSSEEEEEEEESSHHHHHHHHHHHHH
T ss_pred cceEEEecc--cEEEEEeCCCCCEEEEEEEECCHHHHHHHHHHHHH
Confidence 478888876 4777899997 444444 5668888888777654
Done!