Your job contains 1 sequence.
>019747
METNESSYVPSPDVHGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDF
QSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGT
KTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDE
QMRALELILLKLSEDTLYSQTMTVPYTYAGVFFSGFHGMPYGAVPPPVPAVPHNTAAHYG
PNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFS
GTSERKVTISGPQRSIRTAESMIMQKVAYASDRLMD
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 019747
(336 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2184362 - symbol:BTR1L "AT5G04430" species:370... 1053 1.9e-106 1
RGD|621345 - symbol:Nova1 "neuro-oncological ventral anti... 290 6.1e-40 2
UNIPROTKB|F1LMZ7 - symbol:Nova1 "RNA-binding protein Nova... 289 8.1e-40 2
UNIPROTKB|D3DS81 - symbol:NOVA1 "Neuro-oncological ventra... 287 1.7e-39 2
ZFIN|ZDB-GENE-060526-113 - symbol:nova1 "neuro-oncologica... 288 3.4e-39 2
UNIPROTKB|F1PUD6 - symbol:NOVA2 "Uncharacterized protein"... 283 2.4e-38 2
UNIPROTKB|F1MS84 - symbol:NOVA2 "Uncharacterized protein"... 278 4.4e-38 2
UNIPROTKB|Q9UNW9 - symbol:NOVA2 "RNA-binding protein Nova... 279 5.8e-38 2
ZFIN|ZDB-GENE-080211-1 - symbol:nova2 "neuro-oncological ... 296 9.8e-38 2
UNIPROTKB|F1RM28 - symbol:NOVA2 "Uncharacterized protein"... 279 1.4e-37 2
RGD|1308032 - symbol:Nova2 "neuro-oncological ventral ant... 277 1.4e-37 2
MGI|MGI:104297 - symbol:Nova1 "neuro-oncological ventral ... 168 5.7e-35 3
UNIPROTKB|D4AAF8 - symbol:Nova1 "RNA-binding protein Nova... 168 5.7e-35 3
UNIPROTKB|G3X7R5 - symbol:NOVA1 "Uncharacterized protein"... 167 7.5e-35 3
UNIPROTKB|J9NXS6 - symbol:NOVA1 "Uncharacterized protein"... 167 7.5e-35 3
UNIPROTKB|P51513 - symbol:NOVA1 "RNA-binding protein Nova... 159 3.3e-33 3
FB|FBgn0261552 - symbol:ps "pasilla" species:7227 "Drosop... 309 7.4e-27 1
UNIPROTKB|F1NPL2 - symbol:PCBP3 "Uncharacterized protein"... 293 6.6e-26 1
UNIPROTKB|F1NP95 - symbol:NOVA1 "Uncharacterized protein"... 288 2.2e-25 1
UNIPROTKB|B4DXP5 - symbol:PCBP2 "Poly(rC)-binding protein... 284 5.9e-25 1
ZFIN|ZDB-GENE-030131-563 - symbol:pcbp2 "poly(rC) binding... 284 5.9e-25 1
UNIPROTKB|F1NPL4 - symbol:PCBP3 "Uncharacterized protein"... 284 5.9e-25 1
UNIPROTKB|G3V0E8 - symbol:PCBP2 "Poly(RC) binding protein... 283 7.6e-25 1
UNIPROTKB|J9P8W8 - symbol:PCBP2 "Uncharacterized protein"... 279 2.0e-24 1
UNIPROTKB|F1NPL3 - symbol:PCBP3 "Uncharacterized protein"... 212 2.2e-24 2
UNIPROTKB|F1SGT5 - symbol:NOVA1 "Uncharacterized protein"... 160 4.4e-24 3
UNIPROTKB|F8VZX2 - symbol:PCBP2 "Poly(rC)-binding protein... 273 8.7e-24 1
UNIPROTKB|Q5E9A3 - symbol:PCBP1 "Poly(rC)-binding protein... 207 1.2e-23 2
UNIPROTKB|J9P7Y9 - symbol:PCBP1 "Uncharacterized protein"... 207 1.2e-23 2
UNIPROTKB|Q15365 - symbol:PCBP1 "Poly(rC)-binding protein... 207 1.2e-23 2
UNIPROTKB|I3LEC2 - symbol:PCBP1 "Uncharacterized protein"... 207 1.2e-23 2
MGI|MGI:1345635 - symbol:Pcbp1 "poly(rC) binding protein ... 207 1.2e-23 2
RGD|1561319 - symbol:Pcbp1 "poly(rC) binding protein 1" s... 207 1.2e-23 2
RGD|1307430 - symbol:Pcbp3 "poly(rC) binding protein 3" s... 270 1.8e-23 1
UNIPROTKB|J3KQU3 - symbol:NOVA1 "RNA-binding protein Nova... 164 4.2e-23 2
UNIPROTKB|F1NP94 - symbol:NOVA1 "Uncharacterized protein"... 160 5.7e-23 3
UNIPROTKB|F1MBI6 - symbol:NOVA1 "Uncharacterized protein"... 170 7.0e-23 2
FB|FBgn0262737 - symbol:mub "mushroom-body expressed" spe... 201 7.1e-23 2
UNIPROTKB|C9J0A4 - symbol:PCBP4 "Poly(rC)-binding protein... 263 1.0e-22 1
UNIPROTKB|Q0VCU0 - symbol:PCBP4 "Poly(rC)-binding protein... 264 1.1e-22 1
UNIPROTKB|E2RG64 - symbol:PCBP4 "Uncharacterized protein"... 264 1.1e-22 1
RGD|1307910 - symbol:Pcbp4 "poly(rC) binding protein 4" s... 264 1.1e-22 1
UNIPROTKB|I3LRN5 - symbol:PCBP4 "Uncharacterized protein"... 264 1.1e-22 1
UNIPROTKB|P57723 - symbol:PCBP4 "Poly(rC)-binding protein... 263 1.4e-22 1
MGI|MGI:1890471 - symbol:Pcbp4 "poly(rC) binding protein ... 263 1.4e-22 1
UNIPROTKB|H3BRU6 - symbol:PCBP2 "Poly(rC)-binding protein... 261 1.6e-22 1
UNIPROTKB|P57721 - symbol:PCBP3 "Poly(rC)-binding protein... 199 2.3e-22 2
UNIPROTKB|E2RCH9 - symbol:PCBP3 "Uncharacterized protein"... 196 5.8e-22 2
UNIPROTKB|E2QUE1 - symbol:PCBP3 "Uncharacterized protein"... 196 6.0e-22 2
UNIPROTKB|F1SFQ4 - symbol:PCBP2 "Uncharacterized protein"... 194 6.2e-22 2
UNIPROTKB|Q17QV0 - symbol:PCBP3 "Uncharacterized protein"... 195 6.6e-22 2
UNIPROTKB|E9PFP8 - symbol:PCBP3 "Poly(rC)-binding protein... 195 6.6e-22 2
UNIPROTKB|Q3SYT9 - symbol:PCBP2 "Poly(RC) binding protein... 193 7.6e-22 2
MGI|MGI:1890470 - symbol:Pcbp3 "poly(rC) binding protein ... 195 8.0e-22 2
UNIPROTKB|D4A1P3 - symbol:Pcbp3 "Protein Pcbp3" species:1... 195 8.0e-22 2
UNIPROTKB|J3QT27 - symbol:PCBP3 "Poly(rC)-binding protein... 191 9.0e-22 2
UNIPROTKB|E2RCF9 - symbol:PCBP2 "Uncharacterized protein"... 194 9.3e-22 2
UNIPROTKB|G3N2N4 - symbol:NOVA1 "Uncharacterized protein"... 160 1.2e-21 2
ZFIN|ZDB-GENE-050522-157 - symbol:pcbp3 "poly(rC) binding... 192 1.3e-21 2
UNIPROTKB|B7Z770 - symbol:NOVA1 "RNA-binding protein Nova... 159 1.5e-21 2
UNIPROTKB|Q15366 - symbol:PCBP2 "Poly(rC)-binding protein... 194 2.1e-21 2
RGD|1309626 - symbol:Pcbp2 "poly(rC) binding protein 2" s... 194 2.1e-21 2
CGD|CAL0000592 - symbol:orf19.5627 species:5476 "Candida ... 250 2.4e-21 1
MGI|MGI:108202 - symbol:Pcbp2 "poly(rC) binding protein 2... 193 2.6e-21 2
ZFIN|ZDB-GENE-070424-78 - symbol:zgc:162999 "zgc:162999" ... 191 3.8e-21 2
ZFIN|ZDB-GENE-040426-2122 - symbol:zgc:65870 "zgc:65870" ... 194 6.2e-21 2
UNIPROTKB|F8VWX1 - symbol:NOVA1 "RNA-binding protein Nova... 164 3.0e-20 2
UNIPROTKB|E1BVU6 - symbol:LOC100858906 "Uncharacterized p... 180 4.2e-20 2
UNIPROTKB|D4ADH2 - symbol:D4ADH2 "Uncharacterized protein... 224 6.2e-18 1
ASPGD|ASPL0000045500 - symbol:AN10257 species:162425 "Eme... 181 1.2e-17 2
SGD|S000000437 - symbol:PBP2 "RNA binding protein" specie... 189 2.5e-17 2
FB|FBgn0262735 - symbol:Imp "IGF-II mRNA-binding protein"... 227 9.8e-17 1
UNIPROTKB|E2RA50 - symbol:E2RA50 "Uncharacterized protein... 170 1.7e-16 2
CGD|CAL0001510 - symbol:PBP2 species:5476 "Candida albica... 178 2.5e-16 2
UNIPROTKB|E1C453 - symbol:HNRNPK "Heterogeneous nuclear r... 168 2.7e-16 2
UNIPROTKB|F1LT74 - symbol:F1LT74 "Uncharacterized protein... 215 3.5e-16 1
UNIPROTKB|E2RJ54 - symbol:E2RJ54 "Uncharacterized protein... 164 4.4e-16 2
UNIPROTKB|F1NVW3 - symbol:IGF2BP2 "Uncharacterized protei... 222 4.5e-16 1
POMBASE|SPCC757.09c - symbol:rnc1 "RNA-binding protein th... 169 4.8e-16 2
UNIPROTKB|Q5ZIQ3 - symbol:HNRNPK "Heterogeneous nuclear r... 163 1.1e-15 2
UNIPROTKB|F1NWN2 - symbol:IGF2BP2 "Uncharacterized protei... 216 2.4e-15 1
UNIPROTKB|G4N5A5 - symbol:MGG_16887 "Uncharacterized prot... 161 3.3e-15 2
UNIPROTKB|H9L0I0 - symbol:HNRPK "Uncharacterized protein"... 157 3.5e-15 2
ZFIN|ZDB-GENE-040426-1923 - symbol:hnrpkl "heterogeneous ... 155 3.9e-15 2
ZFIN|ZDB-GENE-000308-1 - symbol:igf2bp3 "insulin-like gro... 214 4.7e-15 1
UNIPROTKB|H9L011 - symbol:LOC426023 "Uncharacterized prot... 193 5.0e-15 1
UNIPROTKB|H9L242 - symbol:HNRPK "Uncharacterized protein"... 157 5.7e-15 2
TAIR|locus:2161413 - symbol:AT5G46190 "AT5G46190" species... 161 5.9e-15 2
WB|WBGene00010908 - symbol:M88.5 species:6239 "Caenorhabd... 200 6.8e-15 2
WB|WBGene00013347 - symbol:Y59A8B.10 species:6239 "Caenor... 206 2.0e-14 1
UNIPROTKB|Q9GRY9 - symbol:Y59A8B.10 "Protein Y59A8B.10, i... 206 2.0e-14 1
UNIPROTKB|K7GQW0 - symbol:RFC4 "Uncharacterized protein" ... 167 4.0e-14 2
ZFIN|ZDB-GENE-040426-1926 - symbol:hnrnpk "heterogeneous ... 148 4.2e-14 2
ZFIN|ZDB-GENE-060503-536 - symbol:igf2bp2b "insulin-like ... 204 4.4e-14 1
WB|WBGene00017816 - symbol:F26B1.2b species:6239 "Caenorh... 149 6.2e-14 2
UNIPROTKB|P91277 - symbol:F26B1.2 "Protein F26B1.2, isofo... 149 6.2e-14 2
UNIPROTKB|F8W0G4 - symbol:PCBP2 "Poly(rC)-binding protein... 183 6.9e-14 1
MGI|MGI:1890358 - symbol:Igf2bp2 "insulin-like growth fac... 163 1.6e-13 2
RGD|1305614 - symbol:Igf2bp2 "insulin-like growth factor ... 163 1.6e-13 2
UNIPROTKB|B4DLC0 - symbol:PCBP2 "Poly(rC)-binding protein... 193 2.0e-13 1
WARNING: Descriptions of 132 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2184362 [details] [associations]
symbol:BTR1L "AT5G04430" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0003727
"single-stranded RNA binding" evidence=IPI] [GO:0046719 "regulation
of viral protein levels in host cell" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0008380 GO:GO:0003727 KO:K14944
IPI:IPI00533577 RefSeq:NP_850764.1 UniGene:At.4918
ProteinModelPortal:F4JW99 SMR:F4JW99 PRIDE:F4JW99
EnsemblPlants:AT5G04430.2 GeneID:830322 KEGG:ath:AT5G04430
OMA:RNIMEIT PhylomeDB:F4JW99 GO:GO:0046719 Uniprot:F4JW99
Length = 334
Score = 1053 (375.7 bits), Expect = 1.9e-106, P = 1.9e-106
Identities = 204/336 (60%), Positives = 268/336 (79%)
Query: 1 METNESSYVPSPDVHGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDF 60
ME+ ES SP+ KRS P S +D EKPT+IRFLVSN AG+VIGKGGSTI +F
Sbjct: 1 MESTESYAAGSPEELAKRSPEPHDSSEADSAEKPTHIRFLVSNAAAGSVIGKGGSTITEF 60
Query: 61 QSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGT 120
Q++SGARIQLSR+ EFFPGTTDRIIMISG+I E++ ++L++DKL +ELHAED ++V
Sbjct: 61 QAKSGARIQLSRNQEFFPGTTDRIIMISGSIKEVVNGLELILDKLHSELHAED-GNEVEP 119
Query: 121 KTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDE 180
+ ++RL+VPNSSCG IIGK GATIKSF+++S+A IKIS LD+++YGL+DRLVTL+GT +E
Sbjct: 120 RRRIRLVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDNTFYGLSDRLVTLSGTFEE 179
Query: 181 QMRALELILLKLSEDTLYSQTMTVPYTYAGVFFSGFHGMPYGXXXXXXXXXXHNTAAHYG 240
QMRA++LIL KL+ED YSQ + PY+YAG+F+SGFHG PY +N+ +Y
Sbjct: 180 QMRAIDLILAKLTEDDHYSQNVHSPYSYAGLFYSGFHGPPYAYALPSVATAGYNSV-NYA 238
Query: 241 PNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFS 300
PN G K+QN+K++ + ++TIGVADEHIG V+GRGGRNIMEI+Q++GARIK+SDRGDF S
Sbjct: 239 PNGSGGKYQNHKEEASTTVTIGVADEHIGLVLGRGGRNIMEITQMTGARIKISDRGDFMS 298
Query: 301 GTSERKVTISGPQRSIRTAESMIMQKVAYASDRLMD 336
GT++RKV+I+GPQR+I+ AE+MI QKV A++R D
Sbjct: 299 GTTDRKVSITGPQRAIQQAETMIKQKVDSATERTTD 334
>RGD|621345 [details] [associations]
symbol:Nova1 "neuro-oncological ventral antigen 1" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0005634 GO:GO:0007399 GO:GO:0003723
eggNOG:NOG258094 HOGENOM:HOG000007833 HOVERGEN:HBG082048
EMBL:AY262017 IPI:IPI00331877 UniGene:Rn.232418
ProteinModelPortal:Q80WA4 SMR:Q80WA4 PRIDE:Q80WA4 UCSC:RGD:621345
ArrayExpress:Q80WA4 Genevestigator:Q80WA4 Uniprot:Q80WA4
Length = 474
Score = 290 (107.1 bits), Expect = 6.1e-40, Sum P(2) = 6.1e-40
Identities = 79/228 (34%), Positives = 128/228 (56%)
Query: 12 PDVHGKRSTAPVKSLSSDPT---EKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGAR 67
PD + AP ++ S+ T E Y ++ L+ + AG++IGKGG TI Q ++GA
Sbjct: 22 PDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGAT 81
Query: 68 IQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAE----DQADDVGTKT- 122
I+LS+S +F+PGTT+R+ +I GTI E L AV I + + E+ + + +T
Sbjct: 82 IKLSKSKDFYPGTTERVCLIQGTI-EALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTT 140
Query: 123 -------KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLT 175
++++IVPNS+ G IIGK GAT+K+ M+ S A +++S+ L +R+VT++
Sbjct: 141 VNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI-NLQERVVTVS 199
Query: 176 GTLDEQMRALELILLKLSEDTLYSQTMTVPYT-YAG-VFFSGFHGMPY 221
G ++ +A+ELI+ K+ ED + + Y G V S G PY
Sbjct: 200 GEPEQNRKAVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGFPY 247
Score = 159 (61.0 bits), Expect = 6.1e-40, Sum P(2) = 6.1e-40
Identities = 27/81 (33%), Positives = 53/81 (65%)
Query: 249 QNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVT 308
+ + D + + I V + +G ++G+GG+ ++E +++GARI++S +G+F GT RKVT
Sbjct: 389 EKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVT 448
Query: 309 ISGPQRSIRTAESMIMQKVAY 329
I+G + + A+ +I Q++ Y
Sbjct: 449 ITGTPAATQAAQYLITQRITY 469
Score = 139 (54.0 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 33/94 (35%), Positives = 54/94 (57%)
Query: 19 STAPVKSLSSDPTEKPT-----YIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRS 73
+ +P+ + + TEK T + V L GA++GKGG T+ ++Q +GARIQ+S+
Sbjct: 376 AASPLAASAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKK 435
Query: 74 HEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLT 107
EF PGT +R + I+GT +A +I + +T
Sbjct: 436 GEFVPGTRNRKVTITGT-PAATQAAQYLITQRIT 468
Score = 128 (50.1 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 241 PNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFS 300
P G K N +D L + + G ++G+GG+ I+++ + +GA IK+S DF+
Sbjct: 33 PEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYP 92
Query: 301 GTSERKVTISGPQRSIRTAESMIMQKV 327
GT+ER I G ++ I +K+
Sbjct: 93 GTTERVCLIQGTIEALNAVHGFIAEKI 119
>UNIPROTKB|F1LMZ7 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003723 IPI:IPI00331877
Ensembl:ENSRNOT00000044527 ArrayExpress:F1LMZ7 Uniprot:F1LMZ7
Length = 474
Score = 289 (106.8 bits), Expect = 8.1e-40, Sum P(2) = 8.1e-40
Identities = 79/228 (34%), Positives = 128/228 (56%)
Query: 12 PDVHGKRSTAPVKSLSSDPT---EKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGAR 67
PD + AP ++ S+ T E Y ++ L+ + AG++IGKGG TI Q ++GA
Sbjct: 22 PDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGAT 81
Query: 68 IQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAE----DQADDVGTKT- 122
I+LS+S +F+PGTT+R+ +I GTI E L AV I + + E+ + + +T
Sbjct: 82 IKLSKSKDFYPGTTERVCLIQGTI-EALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTT 140
Query: 123 -------KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLT 175
++++IVPNS+ G IIGK GAT+K+ M+ S A +++S+ L +R+VT++
Sbjct: 141 VNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI-NLQERVVTVS 199
Query: 176 GTLDEQMRALELILLKLSEDTLYSQTMTVPYT-YAG-VFFSGFHGMPY 221
G ++ +A+ELI+ K+ ED + + Y G V S G PY
Sbjct: 200 GEPEQNRKAVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPY 247
Score = 159 (61.0 bits), Expect = 8.1e-40, Sum P(2) = 8.1e-40
Identities = 27/81 (33%), Positives = 53/81 (65%)
Query: 249 QNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVT 308
+ + D + + I V + +G ++G+GG+ ++E +++GARI++S +G+F GT RKVT
Sbjct: 389 EKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVT 448
Query: 309 ISGPQRSIRTAESMIMQKVAY 329
I+G + + A+ +I Q++ Y
Sbjct: 449 ITGTPAATQAAQYLITQRITY 469
Score = 139 (54.0 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 33/94 (35%), Positives = 54/94 (57%)
Query: 19 STAPVKSLSSDPTEKPT-----YIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRS 73
+ +P+ + + TEK T + V L GA++GKGG T+ ++Q +GARIQ+S+
Sbjct: 376 AASPLAASAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKK 435
Query: 74 HEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLT 107
EF PGT +R + I+GT +A +I + +T
Sbjct: 436 GEFVPGTRNRKVTITGT-PAATQAAQYLITQRIT 468
Score = 128 (50.1 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 241 PNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFS 300
P G K N +D L + + G ++G+GG+ I+++ + +GA IK+S DF+
Sbjct: 33 PEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYP 92
Query: 301 GTSERKVTISGPQRSIRTAESMIMQKV 327
GT+ER I G ++ I +K+
Sbjct: 93 GTTERVCLIQGTIEALNAVHGFIAEKI 119
>UNIPROTKB|D3DS81 [details] [associations]
symbol:NOVA1 "Neuro-oncological ventral antigen 1, isoform
CRA_a" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:CH471078
RefSeq:NP_006480.2 UniGene:Hs.31588 GeneID:4857 KEGG:hsa:4857
CTD:4857 HGNC:HGNC:7886 HOGENOM:HOG000007833 KO:K14944
ChiTaRS:NOVA1 GenomeRNAi:4857 NextBio:18710 EMBL:AL079343
EMBL:AL132716 IPI:IPI00956017 SMR:D3DS81 Ensembl:ENST00000465357
UCSC:uc001wpz.3 Uniprot:D3DS81
Length = 483
Score = 287 (106.1 bits), Expect = 1.7e-39, Sum P(2) = 1.7e-39
Identities = 78/228 (34%), Positives = 128/228 (56%)
Query: 12 PDVHGKRSTAPVKSLSSDPT---EKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGAR 67
PD + AP ++ S+ T E Y ++ L+ + AG++IGKGG TI Q ++GA
Sbjct: 23 PDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGAT 82
Query: 68 IQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAE----DQADDVGTKT- 122
I+LS+S +F+PGTT+R+ +I GT+ E L AV I + + E+ + + +T
Sbjct: 83 IKLSKSKDFYPGTTERVCLIQGTV-EALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTT 141
Query: 123 -------KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLT 175
++++IVPNS+ G IIGK GAT+K+ M+ S A +++S+ L +R+VT++
Sbjct: 142 VNPDRIKQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGI-NLQERVVTVS 200
Query: 176 GTLDEQMRALELILLKLSEDTLYSQTMTVPYT-YAG-VFFSGFHGMPY 221
G ++ +A+ELI+ K+ ED + + Y G V S G PY
Sbjct: 201 GEPEQNRKAVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPY 248
Score = 159 (61.0 bits), Expect = 1.7e-39, Sum P(2) = 1.7e-39
Identities = 27/81 (33%), Positives = 53/81 (65%)
Query: 249 QNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVT 308
+ + D + + I V + +G ++G+GG+ ++E +++GARI++S +G+F GT RKVT
Sbjct: 390 EKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVT 449
Query: 309 ISGPQRSIRTAESMIMQKVAY 329
I+G + + A+ +I Q++ Y
Sbjct: 450 ITGTPAATQAAQYLITQRITY 470
Score = 139 (54.0 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 33/94 (35%), Positives = 54/94 (57%)
Query: 19 STAPVKSLSSDPTEKPT-----YIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRS 73
+ +P+ + + TEK T + V L GA++GKGG T+ ++Q +GARIQ+S+
Sbjct: 377 AASPLAASAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKK 436
Query: 74 HEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLT 107
EF PGT +R + I+GT +A +I + +T
Sbjct: 437 GEFVPGTRNRKVTITGT-PAATQAAQYLITQRIT 469
Score = 129 (50.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 241 PNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFS 300
P G K N +D L + + G ++G+GG+ I+++ + +GA IK+S DF+
Sbjct: 34 PEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYP 93
Query: 301 GTSERKVTISGPQRSIRTAESMIMQKV 327
GT+ER I G ++ I +K+
Sbjct: 94 GTTERVCLIQGTVEALNAVHGFIAEKI 120
>ZFIN|ZDB-GENE-060526-113 [details] [associations]
symbol:nova1 "neuro-oncological ventral antigen 1"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-060526-113 GO:GO:0003723 EMBL:BX005407
GeneTree:ENSGT00650000093048 CTD:4857 eggNOG:NOG258094
HOGENOM:HOG000007833 HOVERGEN:HBG082048 KO:K14944 OMA:FRQNNTA
EMBL:BC171495 EMBL:BC171499 IPI:IPI00487894 RefSeq:NP_001038254.1
UniGene:Dr.103261 SMR:Q1LYC7 Ensembl:ENSDART00000097684
GeneID:555590 KEGG:dre:555590 InParanoid:Q1LYC7 OrthoDB:EOG40ZQZR
NextBio:20881056 Uniprot:Q1LYC7
Length = 495
Score = 288 (106.4 bits), Expect = 3.4e-39, Sum P(2) = 3.4e-39
Identities = 63/192 (32%), Positives = 115/192 (59%)
Query: 27 SSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIM 86
S+ E +++ L+ + AG++IGKGG TI Q ++GA I+LS+S +F+PGTT+R+ +
Sbjct: 49 SNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCL 108
Query: 87 ISGTIDEILRAVDLVIDKLLTELHAEDQADDVGT---KTKL--------RLIVPNSSCGS 135
I GT++ + + + +K+ + + + V +T + +LIVPNS+ G
Sbjct: 109 IQGTVEALNGVHNFIAEKVREMPQSSQKTEPVSILQPQTTVNPDRIKQAKLIVPNSTAGL 168
Query: 136 IIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSED 195
IIGK GAT+K+ M+ S A +++S+ L +R+VT++G ++ +A+E+I+ K+ ED
Sbjct: 169 IIGKGGATVKAVMEQSGAWVQLSQKPEGI-NLQERVVTVSGEPEQNRKAVEIIVQKIQED 227
Query: 196 TLYSQTMTVPYT 207
S + + Y+
Sbjct: 228 PQSSSCLNISYS 239
Score = 156 (60.0 bits), Expect = 3.4e-39, Sum P(2) = 3.4e-39
Identities = 26/69 (37%), Positives = 48/69 (69%)
Query: 261 IGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAE 320
I V + +G ++G+GG+ ++E +++GARI++S +G+F GT RKVTI+G + + A+
Sbjct: 414 IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFIPGTRNRKVTITGSPAATQAAQ 473
Query: 321 SMIMQKVAY 329
+I Q++ Y
Sbjct: 474 YLISQRITY 482
Score = 135 (52.6 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
+ V L GA++GKGG T+ ++Q +GARIQ+S+ EF PGT +R + I+G+ +
Sbjct: 412 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFIPGTRNRKVTITGS-PAATQ 470
Query: 97 AVDLVIDKLLT 107
A +I + +T
Sbjct: 471 AAQYLISQRIT 481
Score = 115 (45.5 bits), Expect = 0.00083, P = 0.00083
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 247 KFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERK 306
K N ++ L + + G ++G+GG+ I+++ + +GA IK+S DF+ GT+ER
Sbjct: 47 KRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERV 106
Query: 307 VTISGPQRSIRTAESMIMQKV 327
I G ++ + I +KV
Sbjct: 107 CLIQGTVEALNGVHNFIAEKV 127
>UNIPROTKB|F1PUD6 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:AAEX03000869 EMBL:AAEX03000868 Ensembl:ENSCAFT00000006989
Uniprot:F1PUD6
Length = 502
Score = 283 (104.7 bits), Expect = 2.4e-38, Sum P(2) = 2.4e-38
Identities = 75/207 (36%), Positives = 120/207 (57%)
Query: 30 PTEKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMIS 88
P E+ Y ++ L+ + AG++IGKGG TI Q ++GA I+LS+S +F+PGTT+R+ ++
Sbjct: 37 PAEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQ 96
Query: 89 GTIDEILRAVDLVIDKLLTEL-HAEDQADDVGT---KTKL--------RLIVPNSSCGSI 136
GT E L AV I + + E+ A + + V +T + +LIVPNS+ G I
Sbjct: 97 GTA-EALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLI 155
Query: 137 IGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDT 196
IGK GAT+K+ M+ S A +++S+ L +R+VT++G ++ +A+ I+ K+ ED
Sbjct: 156 IGKGGATVKAVMEQSGAWVQLSQKPEGI-NLQERVVTVSGEPEQVHKAVSAIVQKVQEDP 214
Query: 197 LYSQTMTVPYT-YAG-VFFSGFHGMPY 221
S + + Y AG V S G PY
Sbjct: 215 QSSSCLNISYANVAGPVANSNPTGSPY 241
Score = 154 (59.3 bits), Expect = 2.4e-38, Sum P(2) = 2.4e-38
Identities = 26/69 (37%), Positives = 48/69 (69%)
Query: 261 IGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAE 320
I V + +G ++G+GG+ ++E +++GARI++S +G+F GT R+VTI+G + + A+
Sbjct: 421 IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQ 480
Query: 321 SMIMQKVAY 329
+I Q+V Y
Sbjct: 481 YLISQRVTY 489
Score = 134 (52.2 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
+ V L GA++GKGG T+ ++Q +GARIQ+S+ EF PGT +R + I+G+ +
Sbjct: 419 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS-PAATQ 477
Query: 97 AVDLVIDKLLT 107
A +I + +T
Sbjct: 478 AAQYLISQRVT 488
Score = 118 (46.6 bits), Expect = 0.00039, P = 0.00039
Identities = 21/59 (35%), Positives = 37/59 (62%)
Query: 269 GFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
G ++G+GG+ I+++ + +GA IK+S DF+ GT+ER + G ++ S I +KV
Sbjct: 55 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKV 113
>UNIPROTKB|F1MS84 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:DAAA02047389 IPI:IPI00703570 Ensembl:ENSBTAT00000017485
Uniprot:F1MS84
Length = 464
Score = 278 (102.9 bits), Expect = 4.4e-38, Sum P(2) = 4.4e-38
Identities = 72/200 (36%), Positives = 117/200 (58%)
Query: 36 YIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEIL 95
+++ L+ + AG++IGKGG TI Q ++GA I+LS+S +F+PGTT+R+ ++ GT E L
Sbjct: 6 FLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTA-EAL 64
Query: 96 RAVDLVIDKLLTEL-HAEDQADDVGT---KTKL--------RLIVPNSSCGSIIGKAGAT 143
AV I + + E+ A + + V +T + +LIVPNS+ G IIGK GAT
Sbjct: 65 NAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGAT 124
Query: 144 IKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMT 203
+K+ M+ S A +++S+ L +R+VT++G ++ +A+ I+ K+ ED S +
Sbjct: 125 VKAVMEQSGAWVQLSQKPEGI-NLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCLN 183
Query: 204 VPYT-YAG-VFFSGFHGMPY 221
+ Y AG V S G PY
Sbjct: 184 ISYANVAGPVANSNPTGSPY 203
Score = 154 (59.3 bits), Expect = 4.4e-38, Sum P(2) = 4.4e-38
Identities = 26/69 (37%), Positives = 48/69 (69%)
Query: 261 IGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAE 320
I V + +G ++G+GG+ ++E +++GARI++S +G+F GT R+VTI+G + + A+
Sbjct: 383 IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQ 442
Query: 321 SMIMQKVAY 329
+I Q+V Y
Sbjct: 443 YLISQRVTY 451
Score = 134 (52.2 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
+ V L GA++GKGG T+ ++Q +GARIQ+S+ EF PGT +R + I+G+ +
Sbjct: 381 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS-PAATQ 439
Query: 97 AVDLVIDKLLT 107
A +I + +T
Sbjct: 440 AAQYLISQRVT 450
Score = 118 (46.6 bits), Expect = 0.00035, P = 0.00035
Identities = 21/59 (35%), Positives = 37/59 (62%)
Query: 269 GFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
G ++G+GG+ I+++ + +GA IK+S DF+ GT+ER + G ++ S I +KV
Sbjct: 17 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKV 75
>UNIPROTKB|Q9UNW9 [details] [associations]
symbol:NOVA2 "RNA-binding protein Nova-2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 EMBL:AF083898
GO:GO:0005634 GO:GO:0003723 eggNOG:NOG258094 HOGENOM:HOG000007833
HOVERGEN:HBG082048 KO:K14944 EMBL:U70477 EMBL:AC006540
IPI:IPI00156005 RefSeq:NP_002507.1 UniGene:Hs.375439 PDB:1DTJ
PDB:1EC6 PDBsum:1DTJ PDBsum:1EC6 ProteinModelPortal:Q9UNW9
SMR:Q9UNW9 STRING:Q9UNW9 PhosphoSite:Q9UNW9 DMDM:33516944
PRIDE:Q9UNW9 DNASU:4858 Ensembl:ENST00000263257 GeneID:4858
KEGG:hsa:4858 UCSC:uc002pdv.2 CTD:4858 GeneCards:GC19M046442
HGNC:HGNC:7887 HPA:HPA045607 MIM:601991 neXtProt:NX_Q9UNW9
PharmGKB:PA31689 InParanoid:Q9UNW9 OMA:TPPEVVC PhylomeDB:Q9UNW9
EvolutionaryTrace:Q9UNW9 GenomeRNAi:4858 NextBio:18718
ArrayExpress:Q9UNW9 Bgee:Q9UNW9 CleanEx:HS_NOVA2
Genevestigator:Q9UNW9 GermOnline:ENSG00000104967 Uniprot:Q9UNW9
Length = 492
Score = 279 (103.3 bits), Expect = 5.8e-38, Sum P(2) = 5.8e-38
Identities = 74/209 (35%), Positives = 120/209 (57%)
Query: 27 SSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIM 86
S+ E +++ L+ + AG++IGKGG TI Q ++GA I+LS+S +F+PGTT+R+ +
Sbjct: 25 SNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCL 84
Query: 87 ISGTIDEILRAVDLVIDKLLTEL-HAEDQADDVGT---KTKL--------RLIVPNSSCG 134
+ GT E L AV I + + E+ A + + V +T + +LIVPNS+ G
Sbjct: 85 VQGTA-EALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAG 143
Query: 135 SIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSE 194
IIGK GAT+K+ M+ S A +++S+ L +R+VT++G ++ +A+ I+ K+ E
Sbjct: 144 LIIGKGGATVKAVMEQSGAWVQLSQKPEGI-NLQERVVTVSGEPEQVHKAVSAIVQKVQE 202
Query: 195 DTLYSQTMTVPYT-YAG-VFFSGFHGMPY 221
D S + + Y AG V S G PY
Sbjct: 203 DPQSSSCLNISYANVAGPVANSNPTGSPY 231
Score = 154 (59.3 bits), Expect = 5.8e-38, Sum P(2) = 5.8e-38
Identities = 26/69 (37%), Positives = 48/69 (69%)
Query: 261 IGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAE 320
I V + +G ++G+GG+ ++E +++GARI++S +G+F GT R+VTI+G + + A+
Sbjct: 411 IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQ 470
Query: 321 SMIMQKVAY 329
+I Q+V Y
Sbjct: 471 YLISQRVTY 479
Score = 134 (52.2 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
+ V L GA++GKGG T+ ++Q +GARIQ+S+ EF PGT +R + I+G+ +
Sbjct: 409 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS-PAATQ 467
Query: 97 AVDLVIDKLLT 107
A +I + +T
Sbjct: 468 AAQYLISQRVT 478
Score = 121 (47.7 bits), Expect = 0.00018, P = 0.00018
Identities = 25/87 (28%), Positives = 46/87 (52%)
Query: 241 PNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFS 300
P + K N ++ L + + G ++G+GG+ I+++ + +GA IK+S DF+
Sbjct: 17 PEVVCTKRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYP 76
Query: 301 GTSERKVTISGPQRSIRTAESMIMQKV 327
GT+ER + G ++ S I +KV
Sbjct: 77 GTTERVCLVQGTAEALNAVHSFIAEKV 103
>ZFIN|ZDB-GENE-080211-1 [details] [associations]
symbol:nova2 "neuro-oncological ventral antigen 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-080211-1 GO:GO:0003723 eggNOG:NOG258094
HOGENOM:HOG000007833 HOVERGEN:HBG082048 EMBL:AY597523
IPI:IPI01006797 UniGene:Dr.77006 OrthoDB:EOG4D26RK
ArrayExpress:Q53B45 Uniprot:Q53B45
Length = 473
Score = 296 (109.3 bits), Expect = 9.8e-38, Sum P(2) = 9.8e-38
Identities = 67/199 (33%), Positives = 119/199 (59%)
Query: 36 YIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEIL 95
+++ L+ + AG++IGKGG TI Q ++GA I+LS+S +F+PGTT+R+ +I GT++ +
Sbjct: 64 FLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALN 123
Query: 96 RAVDLVIDKLLTELHAEDQADDVGT---KTKL--------RLIVPNSSCGSIIGKAGATI 144
D + +K+ + + + V +T + +L+VPNS+ G IIGK GAT+
Sbjct: 124 NVHDFIAEKVREMPQSAQKTEPVSILQPQTTVNPDRVKQAKLVVPNSTAGLIIGKGGATV 183
Query: 145 KSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTV 204
K+ M+ S A +++S+ L +R+VT++G ++ +A+E+I+ K+ ED S + +
Sbjct: 184 KAVMEQSGAWVQLSQKPDGI-NLQERVVTISGEPEQNRKAVEIIVQKIQEDPQSSSCLNI 242
Query: 205 PYT-YAG-VFFSGFHGMPY 221
Y+ +G V S G PY
Sbjct: 243 SYSNISGPVANSNPTGSPY 261
Score = 132 (51.5 bits), Expect = 9.8e-06, P = 9.8e-06
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGT 90
+ V L GA++GKGG T+ ++Q +GARIQ+S+ EF PGT +R + I+G+
Sbjct: 419 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGS 472
Score = 131 (51.2 bits), Expect = 9.8e-38, Sum P(2) = 9.8e-38
Identities = 22/51 (43%), Positives = 38/51 (74%)
Query: 261 IGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISG 311
I V + +G ++G+GG+ ++E +++GARI++S +G+F GT RKVTI+G
Sbjct: 421 IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITG 471
Score = 114 (45.2 bits), Expect = 0.0010, P = 0.0010
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 269 GFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
G ++G+GG+ I+++ + +GA IK+S DF+ GT+ER I G ++ I +KV
Sbjct: 75 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNNVHDFIAEKV 133
>UNIPROTKB|F1RM28 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:FP102597 Ensembl:ENSSSCT00000003434 Uniprot:F1RM28
Length = 554
Score = 279 (103.3 bits), Expect = 1.4e-37, Sum P(2) = 1.4e-37
Identities = 74/209 (35%), Positives = 120/209 (57%)
Query: 27 SSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIM 86
S+ E +++ L+ + AG++IGKGG TI Q ++GA I+LS+S +F+PGTT+R+ +
Sbjct: 87 SNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCL 146
Query: 87 ISGTIDEILRAVDLVIDKLLTEL-HAEDQADDVGT---KTKL--------RLIVPNSSCG 134
+ GT E L AV I + + E+ A + + V +T + +LIVPNS+ G
Sbjct: 147 VQGTA-EALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAG 205
Query: 135 SIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSE 194
IIGK GAT+K+ M+ S A +++S+ L +R+VT++G ++ +A+ I+ K+ E
Sbjct: 206 LIIGKGGATVKAVMEQSGAWVQLSQKPEGI-NLQERVVTVSGEPEQVHKAVSAIVQKVQE 264
Query: 195 DTLYSQTMTVPYT-YAG-VFFSGFHGMPY 221
D S + + Y AG V S G PY
Sbjct: 265 DPQSSSCLNISYANVAGPVANSNPTGSPY 293
Score = 154 (59.3 bits), Expect = 1.4e-37, Sum P(2) = 1.4e-37
Identities = 26/69 (37%), Positives = 48/69 (69%)
Query: 261 IGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAE 320
I V + +G ++G+GG+ ++E +++GARI++S +G+F GT R+VTI+G + + A+
Sbjct: 473 IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQ 532
Query: 321 SMIMQKVAY 329
+I Q+V Y
Sbjct: 533 YLISQRVTY 541
Score = 134 (52.2 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
+ V L GA++GKGG T+ ++Q +GARIQ+S+ EF PGT +R + I+G+ +
Sbjct: 471 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS-PAATQ 529
Query: 97 AVDLVIDKLLT 107
A +I + +T
Sbjct: 530 AAQYLISQRVT 540
Score = 121 (47.7 bits), Expect = 0.00021, P = 0.00021
Identities = 25/87 (28%), Positives = 46/87 (52%)
Query: 241 PNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFS 300
P + K N ++ L + + G ++G+GG+ I+++ + +GA IK+S DF+
Sbjct: 79 PEVVCTKRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYP 138
Query: 301 GTSERKVTISGPQRSIRTAESMIMQKV 327
GT+ER + G ++ S I +KV
Sbjct: 139 GTTERVCLVQGTAEALNAVHSFIAEKV 165
>RGD|1308032 [details] [associations]
symbol:Nova2 "neuro-oncological ventral antigen 2" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1308032 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00650000093048 IPI:IPI00958388
Ensembl:ENSRNOT00000057965 Uniprot:F1M4H5
Length = 516
Score = 277 (102.6 bits), Expect = 1.4e-37, Sum P(2) = 1.4e-37
Identities = 68/199 (34%), Positives = 115/199 (57%)
Query: 36 YIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEIL 95
+++ L+ + AG++IGKGG TI Q ++GA I+LS+S +F+PGTT+R+ ++ GT + +
Sbjct: 58 FLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALN 117
Query: 96 RAVDLVIDKLLTELHAEDQADDVGT---KTKL--------RLIVPNSSCGSIIGKAGATI 144
A + +K+ A + + V +T + +LIVPNS+ G IIGK GAT+
Sbjct: 118 AAHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATV 177
Query: 145 KSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTV 204
K+ M+ S A +++S+ L +R+VT++G ++ +A+ I+ K+ ED S + +
Sbjct: 178 KAVMEQSGAWVQLSQKPEGI-NLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNI 236
Query: 205 PYT-YAG-VFFSGFHGMPY 221
Y AG V S G PY
Sbjct: 237 SYANVAGPVANSNPTGSPY 255
Score = 154 (59.3 bits), Expect = 1.4e-37, Sum P(2) = 1.4e-37
Identities = 26/69 (37%), Positives = 48/69 (69%)
Query: 261 IGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAE 320
I V + +G ++G+GG+ ++E +++GARI++S +G+F GT R+VTI+G + + A+
Sbjct: 435 IAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQ 494
Query: 321 SMIMQKVAY 329
+I Q+V Y
Sbjct: 495 YLISQRVTY 503
Score = 134 (52.2 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
+ V L GA++GKGG T+ ++Q +GARIQ+S+ EF PGT +R + I+G+ +
Sbjct: 433 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS-PAATQ 491
Query: 97 AVDLVIDKLLT 107
A +I + +T
Sbjct: 492 AAQYLISQRVT 502
Score = 122 (48.0 bits), Expect = 0.00015, P = 0.00015
Identities = 22/59 (37%), Positives = 38/59 (64%)
Query: 269 GFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
G ++G+GG+ I+++ + +GA IK+S DF+ GT+ER + G ++ A S I +KV
Sbjct: 69 GSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAAHSFIAEKV 127
>MGI|MGI:104297 [details] [associations]
symbol:Nova1 "neuro-oncological ventral antigen 1"
species:10090 "Mus musculus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IC]
[GO:0007399 "nervous system development" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:104297 GO:GO:0005634 GO:GO:0003729
GO:GO:0000398 GeneTree:ENSGT00650000093048 CTD:4857
eggNOG:NOG258094 HOGENOM:HOG000007833 HOVERGEN:HBG082048 KO:K14944
OMA:FRQNNTA ChiTaRS:NOVA1 EMBL:AC108802 EMBL:AC156636 EMBL:AF232828
EMBL:AK047565 IPI:IPI00659424 RefSeq:NP_067336.1 UniGene:Mm.247195
ProteinModelPortal:Q9JKN6 SMR:Q9JKN6 PhosphoSite:Q9JKN6
PaxDb:Q9JKN6 PRIDE:Q9JKN6 Ensembl:ENSMUST00000021438 GeneID:664883
KEGG:mmu:664883 UCSC:uc007nmd.2 InParanoid:Q9JKN6 NextBio:426120
Bgee:Q9JKN6 CleanEx:MM_NOVA1 Genevestigator:Q9JKN6
GermOnline:ENSMUSG00000021047 Uniprot:Q9JKN6
Length = 507
Score = 168 (64.2 bits), Expect = 5.7e-35, Sum P(3) = 5.7e-35
Identities = 41/102 (40%), Positives = 63/102 (61%)
Query: 12 PDVHGKRSTAPVKSLSSDPT---EKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGAR 67
PD + AP ++ S+ T E Y ++ L+ + AG++IGKGG TI Q ++GA
Sbjct: 23 PDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGAT 82
Query: 68 IQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTEL 109
I+LS+S +F+PGTT+R+ +I GTI E L AV I + + E+
Sbjct: 83 IKLSKSKDFYPGTTERVCLIQGTI-EALNAVHGFIAEKIREM 123
Score = 160 (61.4 bits), Expect = 5.7e-35, Sum P(3) = 5.7e-35
Identities = 37/101 (36%), Positives = 61/101 (60%)
Query: 123 KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQM 182
++++IVPNS+ G IIGK GAT+K+ M+ S A +++S+ L +R+VT++G ++
Sbjct: 173 QVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI-NLQERVVTVSGEPEQNR 231
Query: 183 RALELILLKLSEDTLYSQTMTVPYT-YAG-VFFSGFHGMPY 221
+A+ELI+ K+ ED + + Y G V S G PY
Sbjct: 232 KAVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPY 272
Score = 159 (61.0 bits), Expect = 5.7e-35, Sum P(3) = 5.7e-35
Identities = 27/81 (33%), Positives = 53/81 (65%)
Query: 249 QNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVT 308
+ + D + + I V + +G ++G+GG+ ++E +++GARI++S +G+F GT RKVT
Sbjct: 414 EKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVT 473
Query: 309 ISGPQRSIRTAESMIMQKVAY 329
I+G + + A+ +I Q++ Y
Sbjct: 474 ITGTPAATQAAQYLITQRITY 494
Score = 148 (57.2 bits), Expect = 6.2e-20, Sum P(2) = 6.2e-20
Identities = 32/89 (35%), Positives = 52/89 (58%)
Query: 19 STAPVKSLSSDP--TEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEF 76
S KS SDP T + ++ +V N AG +IGKGG+T+ QSGA +QLS+ +
Sbjct: 154 SPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDG 213
Query: 77 FPGTTDRIIMISGTIDEILRAVDLVIDKL 105
+R++ +SG ++ +AV+L+I K+
Sbjct: 214 I-NLQERVVTVSGEPEQNRKAVELIIQKI 241
Score = 139 (54.0 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 33/94 (35%), Positives = 54/94 (57%)
Query: 19 STAPVKSLSSDPTEKPT-----YIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRS 73
+ +P+ + + TEK T + V L GA++GKGG T+ ++Q +GARIQ+S+
Sbjct: 401 AASPLAASAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKK 460
Query: 74 HEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLT 107
EF PGT +R + I+GT +A +I + +T
Sbjct: 461 GEFVPGTRNRKVTITGT-PAATQAAQYLITQRIT 493
Score = 128 (50.1 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 241 PNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFS 300
P G K N +D L + + G ++G+GG+ I+++ + +GA IK+S DF+
Sbjct: 34 PEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYP 93
Query: 301 GTSERKVTISGPQRSIRTAESMIMQKV 327
GT+ER I G ++ I +K+
Sbjct: 94 GTTERVCLIQGTIEALNAVHGFIAEKI 120
Score = 111 (44.1 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 255 RTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQR 314
R N + I V + G ++G+GG + I + SGA +++S + D + ER VT+SG
Sbjct: 170 RANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGIN-LQERVVTVSGEPE 228
Query: 315 SIRTAESMIMQKV 327
R A +I+QK+
Sbjct: 229 QNRKAVELIIQKI 241
Score = 108 (43.1 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMR 183
L++++P+ + GSIIGK G TI ++ A IK+S+ Y G +R+ + GT+ E +
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTI-EALN 110
Query: 184 ALE-LILLKLSE 194
A+ I K+ E
Sbjct: 111 AVHGFIAEKIRE 122
Score = 100 (40.3 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 109 LHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLN 168
L E D G+K + + VP + G+I+GK G T+ + + + A I+IS+ G
Sbjct: 411 LGTEKSTD--GSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTR 468
Query: 169 DRLVTLTGTLDEQMRALELILLKLS 193
+R VT+TGT A LI +++
Sbjct: 469 NRKVTITGTPAATQAAQYLITQRIT 493
>UNIPROTKB|D4AAF8 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003729 GO:GO:0000398 EMBL:CH473947
GeneTree:ENSGT00650000093048 CTD:4857 KO:K14944 UniGene:Rn.232418
IPI:IPI00556974 RefSeq:XP_001075031.1 RefSeq:XP_234098.2 SMR:D4AAF8
Ensembl:ENSRNOT00000050372 GeneID:298992 KEGG:rno:298992
NextBio:644625 Uniprot:D4AAF8
Length = 507
Score = 168 (64.2 bits), Expect = 5.7e-35, Sum P(3) = 5.7e-35
Identities = 41/102 (40%), Positives = 63/102 (61%)
Query: 12 PDVHGKRSTAPVKSLSSDPT---EKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGAR 67
PD + AP ++ S+ T E Y ++ L+ + AG++IGKGG TI Q ++GA
Sbjct: 23 PDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGAT 82
Query: 68 IQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTEL 109
I+LS+S +F+PGTT+R+ +I GTI E L AV I + + E+
Sbjct: 83 IKLSKSKDFYPGTTERVCLIQGTI-EALNAVHGFIAEKIREM 123
Score = 160 (61.4 bits), Expect = 5.7e-35, Sum P(3) = 5.7e-35
Identities = 37/101 (36%), Positives = 61/101 (60%)
Query: 123 KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQM 182
++++IVPNS+ G IIGK GAT+K+ M+ S A +++S+ L +R+VT++G ++
Sbjct: 173 QVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI-NLQERVVTVSGEPEQNR 231
Query: 183 RALELILLKLSEDTLYSQTMTVPYT-YAG-VFFSGFHGMPY 221
+A+ELI+ K+ ED + + Y G V S G PY
Sbjct: 232 KAVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPY 272
Score = 159 (61.0 bits), Expect = 5.7e-35, Sum P(3) = 5.7e-35
Identities = 27/81 (33%), Positives = 53/81 (65%)
Query: 249 QNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVT 308
+ + D + + I V + +G ++G+GG+ ++E +++GARI++S +G+F GT RKVT
Sbjct: 414 EKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVT 473
Query: 309 ISGPQRSIRTAESMIMQKVAY 329
I+G + + A+ +I Q++ Y
Sbjct: 474 ITGTPAATQAAQYLITQRITY 494
Score = 148 (57.2 bits), Expect = 6.2e-20, Sum P(2) = 6.2e-20
Identities = 32/89 (35%), Positives = 52/89 (58%)
Query: 19 STAPVKSLSSDP--TEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEF 76
S KS SDP T + ++ +V N AG +IGKGG+T+ QSGA +QLS+ +
Sbjct: 154 SPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDG 213
Query: 77 FPGTTDRIIMISGTIDEILRAVDLVIDKL 105
+R++ +SG ++ +AV+L+I K+
Sbjct: 214 I-NLQERVVTVSGEPEQNRKAVELIIQKI 241
Score = 139 (54.0 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 33/94 (35%), Positives = 54/94 (57%)
Query: 19 STAPVKSLSSDPTEKPT-----YIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRS 73
+ +P+ + + TEK T + V L GA++GKGG T+ ++Q +GARIQ+S+
Sbjct: 401 AASPLAASAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKK 460
Query: 74 HEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLT 107
EF PGT +R + I+GT +A +I + +T
Sbjct: 461 GEFVPGTRNRKVTITGT-PAATQAAQYLITQRIT 493
Score = 128 (50.1 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 241 PNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFS 300
P G K N +D L + + G ++G+GG+ I+++ + +GA IK+S DF+
Sbjct: 34 PEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYP 93
Query: 301 GTSERKVTISGPQRSIRTAESMIMQKV 327
GT+ER I G ++ I +K+
Sbjct: 94 GTTERVCLIQGTIEALNAVHGFIAEKI 120
Score = 111 (44.1 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 255 RTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQR 314
R N + I V + G ++G+GG + I + SGA +++S + D + ER VT+SG
Sbjct: 170 RANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGIN-LQERVVTVSGEPE 228
Query: 315 SIRTAESMIMQKV 327
R A +I+QK+
Sbjct: 229 QNRKAVELIIQKI 241
Score = 108 (43.1 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMR 183
L++++P+ + GSIIGK G TI ++ A IK+S+ Y G +R+ + GT+ E +
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTI-EALN 110
Query: 184 ALE-LILLKLSE 194
A+ I K+ E
Sbjct: 111 AVHGFIAEKIRE 122
Score = 100 (40.3 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 109 LHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLN 168
L E D G+K + + VP + G+I+GK G T+ + + + A I+IS+ G
Sbjct: 411 LGTEKSTD--GSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTR 468
Query: 169 DRLVTLTGTLDEQMRALELILLKLS 193
+R VT+TGT A LI +++
Sbjct: 469 NRKVTITGTPAATQAAQYLITQRIT 493
>UNIPROTKB|G3X7R5 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:DAAA02052552 EMBL:DAAA02052553
Ensembl:ENSBTAT00000044049 Uniprot:G3X7R5
Length = 507
Score = 167 (63.8 bits), Expect = 7.5e-35, Sum P(3) = 7.5e-35
Identities = 40/102 (39%), Positives = 63/102 (61%)
Query: 12 PDVHGKRSTAPVKSLSSDPT---EKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGAR 67
PD + AP ++ S+ T E Y ++ L+ + AG++IGKGG TI Q ++GA
Sbjct: 23 PDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGAT 82
Query: 68 IQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTEL 109
I+LS+S +F+PGTT+R+ +I GT+ E L AV I + + E+
Sbjct: 83 IKLSKSKDFYPGTTERVCLIQGTV-EALNAVHGFIAEKIREM 123
Score = 160 (61.4 bits), Expect = 7.5e-35, Sum P(3) = 7.5e-35
Identities = 37/101 (36%), Positives = 61/101 (60%)
Query: 123 KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQM 182
++++IVPNS+ G IIGK GAT+K+ M+ S A +++S+ L +R+VT++G ++
Sbjct: 173 QVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI-NLQERVVTVSGEPEQNR 231
Query: 183 RALELILLKLSEDTLYSQTMTVPYT-YAG-VFFSGFHGMPY 221
+A+ELI+ K+ ED + + Y G V S G PY
Sbjct: 232 KAVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPY 272
Score = 159 (61.0 bits), Expect = 7.5e-35, Sum P(3) = 7.5e-35
Identities = 27/81 (33%), Positives = 53/81 (65%)
Query: 249 QNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVT 308
+ + D + + I V + +G ++G+GG+ ++E +++GARI++S +G+F GT RKVT
Sbjct: 414 EKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVT 473
Query: 309 ISGPQRSIRTAESMIMQKVAY 329
I+G + + A+ +I Q++ Y
Sbjct: 474 ITGTPAATQAAQYLITQRITY 494
Score = 148 (57.2 bits), Expect = 6.2e-20, Sum P(2) = 6.2e-20
Identities = 32/89 (35%), Positives = 52/89 (58%)
Query: 19 STAPVKSLSSDP--TEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEF 76
S KS SDP T + ++ +V N AG +IGKGG+T+ QSGA +QLS+ +
Sbjct: 154 SPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDG 213
Query: 77 FPGTTDRIIMISGTIDEILRAVDLVIDKL 105
+R++ +SG ++ +AV+L+I K+
Sbjct: 214 I-NLQERVVTVSGEPEQNRKAVELIIQKI 241
Score = 139 (54.0 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 33/94 (35%), Positives = 54/94 (57%)
Query: 19 STAPVKSLSSDPTEKPT-----YIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRS 73
+ +P+ + + TEK T + V L GA++GKGG T+ ++Q +GARIQ+S+
Sbjct: 401 AASPLAASAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKK 460
Query: 74 HEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLT 107
EF PGT +R + I+GT +A +I + +T
Sbjct: 461 GEFVPGTRNRKVTITGT-PAATQAAQYLITQRIT 493
Score = 129 (50.5 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 241 PNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFS 300
P G K N +D L + + G ++G+GG+ I+++ + +GA IK+S DF+
Sbjct: 34 PEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYP 93
Query: 301 GTSERKVTISGPQRSIRTAESMIMQKV 327
GT+ER I G ++ I +K+
Sbjct: 94 GTTERVCLIQGTVEALNAVHGFIAEKI 120
Score = 111 (44.1 bits), Expect = 4.9e-17, Sum P(2) = 4.9e-17
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 255 RTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQR 314
R N + I V + G ++G+GG + I + SGA +++S + D + ER VT+SG
Sbjct: 170 RANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGIN-LQERVVTVSGEPE 228
Query: 315 SIRTAESMIMQKV 327
R A +I+QK+
Sbjct: 229 QNRKAVELIIQKI 241
Score = 107 (42.7 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMR 183
L++++P+ + GSIIGK G TI ++ A IK+S+ Y G +R+ + GT+ E +
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTV-EALN 110
Query: 184 ALE-LILLKLSE 194
A+ I K+ E
Sbjct: 111 AVHGFIAEKIRE 122
Score = 100 (40.3 bits), Expect = 6.8e-16, Sum P(2) = 6.8e-16
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 109 LHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLN 168
L E D G+K + + VP + G+I+GK G T+ + + + A I+IS+ G
Sbjct: 411 LGTEKSTD--GSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTR 468
Query: 169 DRLVTLTGTLDEQMRALELILLKLS 193
+R VT+TGT A LI +++
Sbjct: 469 NRKVTITGTPAATQAAQYLITQRIT 493
>UNIPROTKB|J9NXS6 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048 CTD:4857
KO:K14944 OMA:FRQNNTA EMBL:AAEX03005630 EMBL:AAEX03005631
RefSeq:XP_547754.1 Ensembl:ENSCAFT00000044255 GeneID:490632
KEGG:cfa:490632 Uniprot:J9NXS6
Length = 507
Score = 167 (63.8 bits), Expect = 7.5e-35, Sum P(3) = 7.5e-35
Identities = 40/102 (39%), Positives = 63/102 (61%)
Query: 12 PDVHGKRSTAPVKSLSSDPT---EKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGAR 67
PD + AP ++ S+ T E Y ++ L+ + AG++IGKGG TI Q ++GA
Sbjct: 23 PDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGAT 82
Query: 68 IQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTEL 109
I+LS+S +F+PGTT+R+ +I GT+ E L AV I + + E+
Sbjct: 83 IKLSKSKDFYPGTTERVCLIQGTV-EALNAVHGFIAEKIREM 123
Score = 160 (61.4 bits), Expect = 7.5e-35, Sum P(3) = 7.5e-35
Identities = 37/101 (36%), Positives = 61/101 (60%)
Query: 123 KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQM 182
++++IVPNS+ G IIGK GAT+K+ M+ S A +++S+ L +R+VT++G ++
Sbjct: 173 QVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI-NLQERVVTVSGEPEQNR 231
Query: 183 RALELILLKLSEDTLYSQTMTVPYT-YAG-VFFSGFHGMPY 221
+A+ELI+ K+ ED + + Y G V S G PY
Sbjct: 232 KAVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPY 272
Score = 159 (61.0 bits), Expect = 7.5e-35, Sum P(3) = 7.5e-35
Identities = 27/81 (33%), Positives = 53/81 (65%)
Query: 249 QNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVT 308
+ + D + + I V + +G ++G+GG+ ++E +++GARI++S +G+F GT RKVT
Sbjct: 414 EKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVT 473
Query: 309 ISGPQRSIRTAESMIMQKVAY 329
I+G + + A+ +I Q++ Y
Sbjct: 474 ITGTPAATQAAQYLITQRITY 494
Score = 148 (57.2 bits), Expect = 6.2e-20, Sum P(2) = 6.2e-20
Identities = 32/89 (35%), Positives = 52/89 (58%)
Query: 19 STAPVKSLSSDP--TEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEF 76
S KS SDP T + ++ +V N AG +IGKGG+T+ QSGA +QLS+ +
Sbjct: 154 SPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDG 213
Query: 77 FPGTTDRIIMISGTIDEILRAVDLVIDKL 105
+R++ +SG ++ +AV+L+I K+
Sbjct: 214 I-NLQERVVTVSGEPEQNRKAVELIIQKI 241
Score = 139 (54.0 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 33/94 (35%), Positives = 54/94 (57%)
Query: 19 STAPVKSLSSDPTEKPT-----YIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRS 73
+ +P+ + + TEK T + V L GA++GKGG T+ ++Q +GARIQ+S+
Sbjct: 401 AASPLAASAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKK 460
Query: 74 HEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLT 107
EF PGT +R + I+GT +A +I + +T
Sbjct: 461 GEFVPGTRNRKVTITGT-PAATQAAQYLITQRIT 493
Score = 129 (50.5 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 241 PNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFS 300
P G K N +D L + + G ++G+GG+ I+++ + +GA IK+S DF+
Sbjct: 34 PEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYP 93
Query: 301 GTSERKVTISGPQRSIRTAESMIMQKV 327
GT+ER I G ++ I +K+
Sbjct: 94 GTTERVCLIQGTVEALNAVHGFIAEKI 120
Score = 111 (44.1 bits), Expect = 4.9e-17, Sum P(2) = 4.9e-17
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 255 RTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQR 314
R N + I V + G ++G+GG + I + SGA +++S + D + ER VT+SG
Sbjct: 170 RANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGIN-LQERVVTVSGEPE 228
Query: 315 SIRTAESMIMQKV 327
R A +I+QK+
Sbjct: 229 QNRKAVELIIQKI 241
Score = 107 (42.7 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMR 183
L++++P+ + GSIIGK G TI ++ A IK+S+ Y G +R+ + GT+ E +
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTV-EALN 110
Query: 184 ALE-LILLKLSE 194
A+ I K+ E
Sbjct: 111 AVHGFIAEKIRE 122
Score = 100 (40.3 bits), Expect = 6.8e-16, Sum P(2) = 6.8e-16
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 109 LHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLN 168
L E D G+K + + VP + G+I+GK G T+ + + + A I+IS+ G
Sbjct: 411 LGTEKSTD--GSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTR 468
Query: 169 DRLVTLTGTLDEQMRALELILLKLS 193
+R VT+TGT A LI +++
Sbjct: 469 NRKVTITGTPAATQAAQYLITQRIT 493
>UNIPROTKB|P51513 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0007268 "synaptic
transmission" evidence=TAS] [GO:0007626 "locomotory behavior"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0008380 GO:GO:0007268
GO:GO:0003729 GO:GO:0007626 GO:GO:0003723 EMBL:CH471078
GO:GO:0000398 EMBL:U04840 EMBL:AK289639 EMBL:AK291022 EMBL:BC075038
EMBL:BC075039 EMBL:Z70771 IPI:IPI00019244 IPI:IPI00221187
IPI:IPI00221188 IPI:IPI00816603 PIR:I38489 RefSeq:NP_002506.2
RefSeq:NP_006480.2 RefSeq:NP_006482.1 UniGene:Hs.31588 PDB:1DT4
PDB:2ANN PDB:2ANR PDBsum:1DT4 PDBsum:2ANN PDBsum:2ANR
ProteinModelPortal:P51513 SMR:P51513 IntAct:P51513
MINT:MINT-1381951 STRING:P51513 PhosphoSite:P51513 DMDM:1709303
PRIDE:P51513 Ensembl:ENST00000344429 Ensembl:ENST00000539517
GeneID:4857 KEGG:hsa:4857 UCSC:uc001wpy.3 UCSC:uc001wqa.3
UCSC:uc001wqb.3 CTD:4857 GeneCards:GC14M026915 H-InvDB:HIX0037755
HGNC:HGNC:7886 HPA:HPA004155 MIM:602157 neXtProt:NX_P51513
PharmGKB:PA31688 eggNOG:NOG258094 HOGENOM:HOG000007833
HOVERGEN:HBG082048 InParanoid:P51513 KO:K14944 OMA:FRQNNTA
ChiTaRS:NOVA1 EvolutionaryTrace:P51513 GenomeRNAi:4857
NextBio:18710 ArrayExpress:P51513 Bgee:P51513 CleanEx:HS_NOVA1
Genevestigator:P51513 GermOnline:ENSG00000139910 Uniprot:P51513
Length = 510
Score = 159 (61.0 bits), Expect = 3.3e-33, Sum P(3) = 3.3e-33
Identities = 27/81 (33%), Positives = 53/81 (65%)
Query: 249 QNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVT 308
+ + D + + I V + +G ++G+GG+ ++E +++GARI++S +G+F GT RKVT
Sbjct: 417 EKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVT 476
Query: 309 ISGPQRSIRTAESMIMQKVAY 329
I+G + + A+ +I Q++ Y
Sbjct: 477 ITGTPAATQAAQYLITQRITY 497
Score = 159 (61.0 bits), Expect = 3.3e-33, Sum P(3) = 3.3e-33
Identities = 37/101 (36%), Positives = 61/101 (60%)
Query: 123 KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQM 182
++++IVPNS+ G IIGK GAT+K+ M+ S A +++S+ L +R+VT++G ++
Sbjct: 176 QVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGI-NLQERVVTVSGEPEQNR 234
Query: 183 RALELILLKLSEDTLYSQTMTVPYT-YAG-VFFSGFHGMPY 221
+A+ELI+ K+ ED + + Y G V S G PY
Sbjct: 235 KAVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPY 275
Score = 154 (59.3 bits), Expect = 3.3e-33, Sum P(3) = 3.3e-33
Identities = 40/105 (38%), Positives = 63/105 (60%)
Query: 12 PDVHGKRSTAPVKSLSSDPT---EKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGAR 67
PD + AP ++ S+ T E Y ++ L+ + AG++IGKGG TI Q ++GA
Sbjct: 23 PDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGAT 82
Query: 68 IQLSR---SHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTEL 109
I+LS+ S +F+PGTT+R+ +I GT+ E L AV I + + E+
Sbjct: 83 IKLSKLSKSKDFYPGTTERVCLIQGTV-EALNAVHGFIAEKIREM 126
Score = 147 (56.8 bits), Expect = 8.0e-20, Sum P(2) = 8.0e-20
Identities = 32/89 (35%), Positives = 52/89 (58%)
Query: 19 STAPVKSLSSDP--TEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEF 76
S KS SDP T + ++ +V N AG +IGKGG+T+ QSGA +QLS+ +
Sbjct: 157 SPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDG 216
Query: 77 FPGTTDRIIMISGTIDEILRAVDLVIDKL 105
+R++ +SG ++ +AV+L+I K+
Sbjct: 217 I-NLQERVVTVSGEPEQNRKAVELIIQKI 244
Score = 139 (54.0 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 33/94 (35%), Positives = 54/94 (57%)
Query: 19 STAPVKSLSSDPTEKPT-----YIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRS 73
+ +P+ + + TEK T + V L GA++GKGG T+ ++Q +GARIQ+S+
Sbjct: 404 AASPLAASAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKK 463
Query: 74 HEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLT 107
EF PGT +R + I+GT +A +I + +T
Sbjct: 464 GEFVPGTRNRKVTITGT-PAATQAAQYLITQRIT 496
Score = 117 (46.2 bits), Expect = 0.00052, P = 0.00052
Identities = 26/90 (28%), Positives = 45/90 (50%)
Query: 241 PNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRG---D 297
P G K N +D L + + G ++G+GG+ I+++ + +GA IK+S D
Sbjct: 34 PEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKLSKSKD 93
Query: 298 FFSGTSERKVTISGPQRSIRTAESMIMQKV 327
F+ GT+ER I G ++ I +K+
Sbjct: 94 FYPGTTERVCLIQGTVEALNAVHGFIAEKI 123
Score = 110 (43.8 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 24/73 (32%), Positives = 41/73 (56%)
Query: 255 RTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQR 314
R N + I V + G ++G+GG + + + SGA +++S + D + ER VT+SG
Sbjct: 173 RANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGIN-LQERVVTVSGEPE 231
Query: 315 SIRTAESMIMQKV 327
R A +I+QK+
Sbjct: 232 QNRKAVELIIQKI 244
Score = 107 (42.7 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHS---YYGLNDRLVTLTGTLDE 180
L++++P+ + GSIIGK G TI ++ A IK+S+L S Y G +R+ + GT+ E
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKLSKSKDFYPGTTERVCLIQGTV-E 110
Query: 181 QMRALE-LILLKLSE 194
+ A+ I K+ E
Sbjct: 111 ALNAVHGFIAEKIRE 125
Score = 100 (40.3 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 109 LHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLN 168
L E D G+K + + VP + G+I+GK G T+ + + + A I+IS+ G
Sbjct: 414 LGTEKSTD--GSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTR 471
Query: 169 DRLVTLTGTLDEQMRALELILLKLS 193
+R VT+TGT A LI +++
Sbjct: 472 NRKVTITGTPAATQAAQYLITQRIT 496
>FB|FBgn0261552 [details] [associations]
symbol:ps "pasilla" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEP] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0000398 HSSP:Q9UNW9 FlyBase:FBgn0261552 EMBL:BT001623
ProteinModelPortal:Q8IGS7 PRIDE:Q8IGS7 InParanoid:Q8IGS7
ArrayExpress:Q8IGS7 Bgee:Q8IGS7 Uniprot:Q8IGS7
Length = 605
Score = 309 (113.8 bits), Expect = 7.4e-27, P = 7.4e-27
Identities = 82/296 (27%), Positives = 146/296 (49%)
Query: 22 PVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTT 81
P L E +++ LV +GA+IGKGG TI Q +GAR+++S+SH+F+PGTT
Sbjct: 86 PAFQLQQSFCETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTT 145
Query: 82 DRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKT------KLRLIVPNSSCGS 135
+R+ +I+G+ + I+ ++ ++DK+ + ++ D +K +++++VPNS+ G
Sbjct: 146 ERVCLITGSTEAIMVVMEFIMDKIREKPDLTNKIVDTDSKQTQERDKQVKILVPNSTAGM 205
Query: 136 IIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSED 195
IIGK GA IK ++S + ++IS+ L +R +T+ G + A ++IL K+ ED
Sbjct: 206 IIGKGGAFIKQIKEESGSYVQISQKPTDV-SLQERCITIIGDKENNKNACKMILSKIVED 264
Query: 196 TLYSQTMTVPYTYAGVFFSGFH--GMPYGXXXXXXXXXXHNTAAHYGPNMGGRKFQNNKD 253
+ V Y + F+ G PY + + G +GG
Sbjct: 265 PQSGTCLNVSYADVSGPVANFNPTGSPYATNQNAINSSTASLNSTLGTTIGGA------- 317
Query: 254 DRTNSLTIGVADEHIGFVVG--RGGRNIMEISQISGARIKVSDRGDFFSGTSERKV 307
+ SL + ++ +G N+ +Q+ IKV+ RG +S T +V
Sbjct: 318 NSAASLLVNGTGINLSINLGSPNPAPNLAVATQLL-EHIKVAMRGSGYSETVTNEV 372
Score = 132 (51.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 27/71 (38%), Positives = 45/71 (63%)
Query: 257 NSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSI 316
+S + V + IG ++G GR+++EI +SGA +++S +G F GT R VTI+G +I
Sbjct: 517 DSKNVEVPEVIIGAILGPSGRSLVEIQHVSGANVQISKKGIFAPGTRNRIVTITGQPSAI 576
Query: 317 RTAESMIMQKV 327
A+ +I QK+
Sbjct: 577 AKAQYLIEQKI 587
Score = 119 (46.9 bits), Expect = 0.00039, P = 0.00039
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 269 GFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVA 328
G ++G+GG I + + +GAR+K+S DF+ GT+ER I+G +I IM K+
Sbjct: 111 GAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITGSTEAIMVVMEFIMDKIR 170
Query: 329 YASD 332
D
Sbjct: 171 EKPD 174
Score = 117 (46.2 bits), Expect = 0.00066, P = 0.00066
Identities = 31/97 (31%), Positives = 49/97 (50%)
Query: 16 GKRSTAPVKSLSSDPTEKPTYIR----FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLS 71
G +TA + LS PT + V + GA++G G ++ + Q SGA +Q+S
Sbjct: 494 GTATTAQLGGLSKSPTPGDLSSKDSKNVEVPEVIIGAILGPSGRSLVEIQHVSGANVQIS 553
Query: 72 RSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108
+ F PGT +RI+ I+G I +A L+ K+ E
Sbjct: 554 KKGIFAPGTRNRIVTITGQPSAIAKAQYLIEQKINEE 590
>UNIPROTKB|F1NPL2 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00812713 Ensembl:ENSGALT00000021485 ArrayExpress:F1NPL2
Uniprot:F1NPL2
Length = 319
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 88/302 (29%), Positives = 152/302 (50%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G T+ + +SGARI +S +RI+ I+G D I +
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG-----SCPERIVTITGPTDAIFK 70
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
A ++ K +++A V +K LRL+VP S CGS+IGK G+ IK + + A
Sbjct: 71 AFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQ 130
Query: 155 IKIS--RLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTM-------TVP 205
++++ L +S +R VT++GT D ++ ++ I + + E T+ + P
Sbjct: 131 VQVAGDMLPNS----TERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASAP 186
Query: 206 YTYAG--VF-FSGFHGMPY-GXXXXXXXXXXHNTAAHYGPNMGGRKFQNNKDDRTNSLTI 261
+AG F G + +P+ H G G + + T+S +
Sbjct: 187 IIFAGGQAFTIQGQYAIPHPDLTKLHQLAMQHPPFTPLGQTTPGFPERLDATSPTSSHEL 246
Query: 262 GVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAES 321
+ ++ IG ++GR G I EI Q+SGA+IK+++ + G++ER+VTI+G +I A+
Sbjct: 247 TIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATE---GSAERQVTITGSPANISLAQY 303
Query: 322 MI 323
+I
Sbjct: 304 LI 305
Score = 123 (48.4 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 27/73 (36%), Positives = 45/73 (61%)
Query: 27 SSDPTEKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRII 85
+S T KP +R +V G++IGKGGS I + + +GA++Q++ + P +T+R +
Sbjct: 89 NSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG--DMLPNSTERAV 146
Query: 86 MISGTIDEILRAV 98
ISGT D I++ V
Sbjct: 147 TISGTPDAIIQCV 159
>UNIPROTKB|F1NP95 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:AADN02003296
EMBL:AADN02003297 EMBL:AADN02003298 EMBL:AADN02003299
EMBL:AADN02003300 EMBL:AADN02003301 EMBL:AADN02003302
EMBL:AADN02003303 EMBL:AADN02003304 EMBL:AADN02003305
EMBL:AADN02003306 EMBL:AADN02003307 EMBL:AADN02003308
EMBL:AADN02003309 EMBL:AADN02003310 EMBL:AADN02003311
EMBL:AADN02003312 EMBL:AADN02003313 EMBL:AADN02003314
EMBL:AADN02003315 IPI:IPI00814536 Ensembl:ENSGALT00000016012
ArrayExpress:F1NP95 Uniprot:F1NP95
Length = 345
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 78/228 (34%), Positives = 128/228 (56%)
Query: 12 PDVHGKRSTAPVKSLSSDPT---EKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGAR 67
PD + AP ++ S+ T E Y ++ L+ + AG++IGKGG TI Q ++GA
Sbjct: 6 PDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGAT 65
Query: 68 IQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAE----DQADDVGTKT- 122
I+LS+S +F+PGTT+R+ +I GT+ E L AV I + + E+ + + +T
Sbjct: 66 IKLSKSKDFYPGTTERVCLIQGTV-EALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTT 124
Query: 123 -------KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLT 175
++++IVPNS+ G IIGK GAT+K+ M+ S A +++S+ L +R+VT++
Sbjct: 125 VNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI-NLQERVVTVS 183
Query: 176 GTLDEQMRALELILLKLSEDTLYSQTMTVPYT-YAG-VFFSGFHGMPY 221
G ++ +A+ELI+ K+ ED + + Y G V S G PY
Sbjct: 184 GEPEQNRKAVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPY 231
Score = 129 (50.5 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 241 PNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFS 300
P G K N +D L + + G ++G+GG+ I+++ + +GA IK+S DF+
Sbjct: 17 PEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYP 76
Query: 301 GTSERKVTISGPQRSIRTAESMIMQKV 327
GT+ER I G ++ I +K+
Sbjct: 77 GTTERVCLIQGTVEALNAVHGFIAEKI 103
>UNIPROTKB|B4DXP5 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K
UniGene:Hs.546271 HGNC:HGNC:8648 ChiTaRS:PCBP2 EMBL:AK302067
IPI:IPI00900327 SMR:B4DXP5 STRING:B4DXP5 Ensembl:ENST00000552819
UCSC:uc001sdf.4 Uniprot:B4DXP5
Length = 322
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 88/307 (28%), Positives = 154/307 (50%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G ++ + +SGARI +S + +RII ++G + I +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN-----CPERIITLAGPTNAIFK 70
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
A ++IDKL ++ + ++ LRL+VP S CGS+IGK G IK + + A
Sbjct: 71 AFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQ 130
Query: 155 IKIS--RLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYS--QTMTVPY---- 206
++++ L +S +R +T+ G + ++ I + + E S + +T+PY
Sbjct: 131 VQVAGDMLPNS----TERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKP 186
Query: 207 TYAGVFFSGFHGMPYGXXXXXXX-----XXXHNTA---AHYGPNMGGRKFQNNKDD--RT 256
+ + V F+G G Y H A +H+ G F D +T
Sbjct: 187 SSSPVIFAG--GQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQT 244
Query: 257 NSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSI 316
S + + ++ IG ++GR G I EI Q+SGA+IK+++ + G+++R+VTI+G SI
Sbjct: 245 TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVE---GSTDRQVTITGSAASI 301
Query: 317 RTAESMI 323
A+ +I
Sbjct: 302 SLAQYLI 308
Score = 105 (42.0 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 24/83 (28%), Positives = 44/83 (53%)
Query: 27 SSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIM 86
S+ + P +R +V G++IGKGG I + + +GA++Q++ + P +T+R I
Sbjct: 90 STAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG--DMLPNSTERAIT 147
Query: 87 ISGTIDEILRAVDLVIDKLLTEL 109
I+G I+ V + +L L
Sbjct: 148 IAGIPQSIIECVKQICVVMLETL 170
Score = 99 (39.9 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 29/75 (38%), Positives = 38/75 (50%)
Query: 122 TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQ 181
T L +PN G IIG+ GA I S A IKI+ + G DR VT+TG+
Sbjct: 245 TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIA---NPVEGSTDRQVTITGSAASI 301
Query: 182 MRALELILLKLSEDT 196
A LI ++LS +T
Sbjct: 302 SLAQYLINVRLSSET 316
>ZFIN|ZDB-GENE-030131-563 [details] [associations]
symbol:pcbp2 "poly(rC) binding protein 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-030131-563 GO:GO:0003723 GeneTree:ENSGT00550000074311
HOGENOM:HOG000182823 HOVERGEN:HBG053520 CTD:5094 KO:K13162
OMA:CVVMLEL HSSP:Q9UNW9 EMBL:CR848672 EMBL:BC045508 EMBL:BC066603
EMBL:AY398394 IPI:IPI00495300 RefSeq:NP_957486.1 UniGene:Dr.76907
SMR:Q7ZVK5 Ensembl:ENSDART00000025885 GeneID:321844 KEGG:dre:321844
InParanoid:Q7ZVK5 NextBio:20807553 Uniprot:Q7ZVK5
Length = 318
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 85/308 (27%), Positives = 152/308 (49%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G ++ + +SGARI +S + +RII ++G I +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN-----CPERIITLAGPTTAIFK 70
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
A ++I+KL ++ + +K LR++VP S CGS+IGK G IK + + A
Sbjct: 71 AFSMIIEKLEEDISSSMSNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQ 130
Query: 155 IKIS--RLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPYT----- 207
++++ L +S +R +T+ GT + ++ I + + E + +T+PY
Sbjct: 131 VQVAGDMLPNS----TERAITIAGTPLSIIECVKQICVVMLESP--PKGVTIPYRPKPSG 184
Query: 208 ----YAG---VFFSGFHGMPYGXXXXXXXXXXHNTAAHYGPNMGGRKFQNNKDDRTNSLT 260
+AG G H +P + P+ G + +T S
Sbjct: 185 SPVIFAGGQAYAVQGQHAIPQPDLTKLHQLAMQQSPFPLAPSSQGFTAGMDASAQTGSHE 244
Query: 261 IGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAE 320
+ + ++ IG ++GR G I EI Q+SGA+IK+++ + G+S+R+VTI+G SI AE
Sbjct: 245 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVE---GSSDRQVTITGSPASISLAE 301
Query: 321 SMIMQKVA 328
+I +++
Sbjct: 302 YLINARLS 309
Score = 107 (42.7 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 27 SSDPTEKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRII 85
+S T KP +R +V G++IGKGG I + + +GA++Q++ + P +T+R I
Sbjct: 89 NSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG--DMLPNSTERAI 146
Query: 86 MISGTIDEILRAV 98
I+GT I+ V
Sbjct: 147 TIAGTPLSIIECV 159
Score = 88 (36.0 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 27/70 (38%), Positives = 36/70 (51%)
Query: 126 LIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRAL 185
L +PN G IIG+ GA I S A IKI+ + G +DR VT+TG+ A
Sbjct: 245 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIA---NPVEGSSDRQVTITGSPASISLAE 301
Query: 186 ELILLKLSED 195
LI +LS +
Sbjct: 302 YLINARLSSE 311
>UNIPROTKB|F1NPL4 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00571530 Ensembl:ENSGALT00000021482 ArrayExpress:F1NPL4
Uniprot:F1NPL4
Length = 326
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 88/305 (28%), Positives = 152/305 (49%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G T+ + +SGARI +S +RI+ I+G D I +
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG-----SCPERIVTITGPTDAIFK 70
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
A ++ K +++A V +K LRL+VP S CGS+IGK G+ IK + + A
Sbjct: 71 AFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQ 130
Query: 155 IKIS--RLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTM-------TVP 205
++++ L +S +R VT++GT D ++ ++ I + + E T+ + P
Sbjct: 131 VQVAGDMLPNS----TERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASAP 186
Query: 206 YTYAG--VF-FSGFHGMPY-GXXXXXXXXXXHNTAAHYGPNMGGRKFQN---NKDDRTNS 258
+AG F G + +P+ H G G + + T+S
Sbjct: 187 IIFAGGQAFTIQGQYAIPHPDLTKLHQLAMQHPPFTPLGQTTPGFPVPHIGLDATSPTSS 246
Query: 259 LTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRT 318
+ + ++ IG ++GR G I EI Q+SGA+IK+++ + G++ER+VTI+G +I
Sbjct: 247 HELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATE---GSAERQVTITGSPANISL 303
Query: 319 AESMI 323
A+ +I
Sbjct: 304 AQYLI 308
Score = 123 (48.4 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 27/73 (36%), Positives = 45/73 (61%)
Query: 27 SSDPTEKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRII 85
+S T KP +R +V G++IGKGGS I + + +GA++Q++ + P +T+R +
Sbjct: 89 NSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG--DMLPNSTERAV 146
Query: 86 MISGTIDEILRAV 98
ISGT D I++ V
Sbjct: 147 TISGTPDAIIQCV 159
>UNIPROTKB|G3V0E8 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CH471054 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 RefSeq:NP_001122386.1 UniGene:Hs.546271 GeneID:5094
KEGG:hsa:5094 CTD:5094 HGNC:HGNC:8648 KO:K13162 ChiTaRS:PCBP2
GenomeRNAi:5094 NextBio:19648 ProteinModelPortal:G3V0E8 SMR:G3V0E8
PRIDE:G3V0E8 Ensembl:ENST00000437231 Ensembl:ENST00000455667
ArrayExpress:G3V0E8 Bgee:G3V0E8 Uniprot:G3V0E8
Length = 318
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 87/305 (28%), Positives = 153/305 (50%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G ++ + +SGARI +S + +RII ++G + I +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN-----CPERIITLAGPTNAIFK 70
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
A ++IDKL ++ + ++ LRL+VP S CGS+IGK G IK + + A
Sbjct: 71 AFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQ 130
Query: 155 IKIS--RLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPY----TY 208
++++ L +S +R +T+ G + ++ I + + E + +T+PY +
Sbjct: 131 VQVAGDMLPNS----TERAITIAGIPQSIIECVKQICVVMLESP--PKGVTIPYRPKPSS 184
Query: 209 AGVFFSGFHGMPYGXXXXXXX-----XXXHNTA---AHYGPNMGGRKFQNNKDD--RTNS 258
+ V F+G G Y H A +H+ G F D +T S
Sbjct: 185 SPVIFAG--GQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQTTS 242
Query: 259 LTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRT 318
+ + ++ IG ++GR G I EI Q+SGA+IK+++ + G+++R+VTI+G SI
Sbjct: 243 HELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVE---GSTDRQVTITGSAASISL 299
Query: 319 AESMI 323
A+ +I
Sbjct: 300 AQYLI 304
Score = 103 (41.3 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 27 SSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIM 86
S+ + P +R +V G++IGKGG I + + +GA++Q++ + P +T+R I
Sbjct: 90 STAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG--DMLPNSTERAIT 147
Query: 87 ISGTIDEILRAV 98
I+G I+ V
Sbjct: 148 IAGIPQSIIECV 159
Score = 99 (39.9 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 29/75 (38%), Positives = 38/75 (50%)
Query: 122 TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQ 181
T L +PN G IIG+ GA I S A IKI+ + G DR VT+TG+
Sbjct: 241 TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIA---NPVEGSTDRQVTITGSAASI 297
Query: 182 MRALELILLKLSEDT 196
A LI ++LS +T
Sbjct: 298 SLAQYLINVRLSSET 312
>UNIPROTKB|J9P8W8 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03014817 Ensembl:ENSCAFT00000021540 OMA:QTSSHEM
Uniprot:J9P8W8
Length = 315
Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 87/303 (28%), Positives = 153/303 (50%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G ++ + +SGA I +S + +RII ++G + I +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGAGINISEGN-----CPERIITLAGPTNAIFK 70
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK---TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQA 153
A ++IDKL E+ + + LRL+VP S CGS+IGK G IK + + A
Sbjct: 71 AFAMIIDKL-EEVISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 129
Query: 154 VIKIS--RLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPY----T 207
++++ L +S +R +T+ G + ++ I + + + S+ +T+PY +
Sbjct: 130 QVQVAGDMLPNS----TERAITIAGIPQSIIECVKQICVVMLDPP--SKGVTIPYRPKPS 183
Query: 208 YAGVFFSGFHGMPYGXXXXXX--XXXXHNTA---AHYGPNMGGRKFQNNKDD--RTNSLT 260
+ V F+G G G H A +H+ G F + D +T S
Sbjct: 184 SSPVIFAG--GTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGSLDASAQTTSHE 241
Query: 261 IGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAE 320
+ + ++ IG ++GR G I EI Q+SGA+IK+++ + G+++R+VTI+G SI A+
Sbjct: 242 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVE---GSTDRQVTITGSAASISLAQ 298
Query: 321 SMI 323
+I
Sbjct: 299 YLI 301
Score = 103 (41.3 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 27 SSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIM 86
S+ + P +R +V G++IGKGG I + + +GA++Q++ + P +T+R I
Sbjct: 90 STAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG--DMLPNSTERAIT 147
Query: 87 ISGTIDEILRAV 98
I+G I+ V
Sbjct: 148 IAGIPQSIIECV 159
Score = 99 (39.9 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 29/75 (38%), Positives = 38/75 (50%)
Query: 122 TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQ 181
T L +PN G IIG+ GA I S A IKI+ + G DR VT+TG+
Sbjct: 238 TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIA---NPVEGSTDRQVTITGSAASI 294
Query: 182 MRALELILLKLSEDT 196
A LI ++LS +T
Sbjct: 295 SLAQYLINVRLSSET 309
>UNIPROTKB|F1NPL3 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00591502 Ensembl:ENSGALT00000021483 OMA:DLNMNLS
ArrayExpress:F1NPL3 Uniprot:F1NPL3
Length = 356
Score = 212 (79.7 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 59/189 (31%), Positives = 101/189 (53%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G T+ + +SGARI +S +RI+ I+G D I +
Sbjct: 15 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG-----SCPERIVTITGPTDAIFK 69
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
A ++ K +++A V +K LRL+VP S CGS+IGK G+ IK + + A
Sbjct: 70 AFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQ 129
Query: 155 IKIS--RLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYS--QTMTVPY---- 206
++++ L +S +R VT++GT D ++ ++ I + + E + +S + T+PY
Sbjct: 130 VQVAGDMLPNS----TERAVTISGTPDAIIQCVKQICVVMLEVSEHSPPKGATIPYRPKP 185
Query: 207 TYAGVFFSG 215
A + F+G
Sbjct: 186 ASAPIIFAG 194
Score = 123 (48.4 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 27/73 (36%), Positives = 45/73 (61%)
Query: 27 SSDPTEKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRII 85
+S T KP +R +V G++IGKGGS I + + +GA++Q++ + P +T+R +
Sbjct: 88 NSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG--DMLPNSTERAV 145
Query: 86 MISGTIDEILRAV 98
ISGT D I++ V
Sbjct: 146 TISGTPDAIIQCV 158
Score = 117 (46.2 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 26/73 (35%), Positives = 49/73 (67%)
Query: 256 TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRS 315
T+S + + ++ IG ++GR G I EI Q+SGA+IK+++ + G++ER+VTI+G +
Sbjct: 279 TSSHELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATE---GSAERQVTITGSPAN 335
Query: 316 IRTAESMIMQKVA 328
I A+ +I +++
Sbjct: 336 ISLAQYLINARLS 348
Score = 80 (33.2 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 25/70 (35%), Positives = 34/70 (48%)
Query: 126 LIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRAL 185
L +PN G IIG+ G+ I S A IKI+ G +R VT+TG+ A
Sbjct: 284 LTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATE---GSAERQVTITGSPANISLAQ 340
Query: 186 ELILLKLSED 195
LI +LS +
Sbjct: 341 YLINARLSSE 350
>UNIPROTKB|F1SGT5 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:CT826400 Ensembl:ENSSSCT00000031969 Uniprot:F1SGT5
Length = 417
Score = 160 (61.4 bits), Expect = 4.4e-24, Sum P(3) = 4.4e-24
Identities = 37/101 (36%), Positives = 61/101 (60%)
Query: 123 KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQM 182
++++IVPNS+ G IIGK GAT+K+ M+ S A +++S+ L +R+VT++G ++
Sbjct: 83 QVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI-NLQERVVTVSGEPEQNR 141
Query: 183 RALELILLKLSEDTLYSQTMTVPYT-YAG-VFFSGFHGMPY 221
+A+ELI+ K+ ED + + Y G V S G PY
Sbjct: 142 KAVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPY 182
Score = 159 (61.0 bits), Expect = 4.4e-24, Sum P(3) = 4.4e-24
Identities = 27/81 (33%), Positives = 53/81 (65%)
Query: 249 QNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVT 308
+ + D + + I V + +G ++G+GG+ ++E +++GARI++S +G+F GT RKVT
Sbjct: 324 EKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVT 383
Query: 309 ISGPQRSIRTAESMIMQKVAY 329
I+G + + A+ +I Q++ Y
Sbjct: 384 ITGTPAATQAAQYLITQRITY 404
Score = 148 (57.2 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 32/89 (35%), Positives = 52/89 (58%)
Query: 19 STAPVKSLSSDP--TEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEF 76
S KS SDP T + ++ +V N AG +IGKGG+T+ QSGA +QLS+ +
Sbjct: 64 SPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDG 123
Query: 77 FPGTTDRIIMISGTIDEILRAVDLVIDKL 105
+R++ +SG ++ +AV+L+I K+
Sbjct: 124 I-NLQERVVTVSGEPEQNRKAVELIIQKI 151
Score = 139 (54.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 33/94 (35%), Positives = 54/94 (57%)
Query: 19 STAPVKSLSSDPTEKPT-----YIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRS 73
+ +P+ + + TEK T + V L GA++GKGG T+ ++Q +GARIQ+S+
Sbjct: 311 AASPLAASAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKK 370
Query: 74 HEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLT 107
EF PGT +R + I+GT +A +I + +T
Sbjct: 371 GEFVPGTRNRKVTITGT-PAATQAAQYLITQRIT 403
Score = 111 (44.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 255 RTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQR 314
R N + I V + G ++G+GG + I + SGA +++S + D + ER VT+SG
Sbjct: 80 RANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGIN-LQERVVTVSGEPE 138
Query: 315 SIRTAESMIMQKV 327
R A +I+QK+
Sbjct: 139 QNRKAVELIIQKI 151
Score = 100 (40.3 bits), Expect = 6.1e-14, Sum P(2) = 6.1e-14
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 109 LHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLN 168
L E D G+K + + VP + G+I+GK G T+ + + + A I+IS+ G
Sbjct: 321 LGTEKSTD--GSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTR 378
Query: 169 DRLVTLTGTLDEQMRALELILLKLS 193
+R VT+TGT A LI +++
Sbjct: 379 NRKVTITGTPAATQAAQYLITQRIT 403
Score = 60 (26.2 bits), Expect = 4.4e-24, Sum P(3) = 4.4e-24
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 77 FPGTTDRIIMISGTIDEILRAVDLVIDKLLTEL 109
F GTT+R+ +I GT+ E L AV I + + E+
Sbjct: 2 FTGTTERVCLIQGTV-EALNAVHGFIAEKIREM 33
>UNIPROTKB|F8VZX2 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021216
ProteinModelPortal:F8VZX2 SMR:F8VZX2 Ensembl:ENST00000549863
ArrayExpress:F8VZX2 Bgee:F8VZX2 Uniprot:F8VZX2
Length = 321
Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
Identities = 84/304 (27%), Positives = 151/304 (49%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G ++ + +SGARI +S + +RII ++G + I +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN-----CPERIITLAGPTNAIFK 70
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
A ++IDKL ++ + ++ LRL+VP S CGS+IGK G IK + + A
Sbjct: 71 AFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQ 130
Query: 155 IKIS--RLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYS--QTMTVPY---- 206
++++ L +S +R +T+ G + ++ I + + E S + +T+PY
Sbjct: 131 VQVAGDMLPNS----TERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKP 186
Query: 207 TYAGVFFSG-----FH--GMPYGXXXXXXXXXXHNTAAHYGPNMGGRKFQNNKDDRTNSL 259
+ + V F+G H M + P + G + +T S
Sbjct: 187 SSSPVIFAGGQLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSH 246
Query: 260 TIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTA 319
+ + ++ IG ++GR G I EI Q+SGA+IK+++ + G+++R+VTI+G SI A
Sbjct: 247 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVE---GSTDRQVTITGSAASISLA 303
Query: 320 ESMI 323
+ +I
Sbjct: 304 QYLI 307
>UNIPROTKB|Q5E9A3 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9913 "Bos
taurus" [GO:0003697 "single-stranded DNA binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
EMBL:BT021017 IPI:IPI00687560 RefSeq:NP_001015565.1 UniGene:Bt.4620
ProteinModelPortal:Q5E9A3 SMR:Q5E9A3 MINT:MINT-6732977
STRING:Q5E9A3 PRIDE:Q5E9A3 Ensembl:ENSBTAT00000011824 GeneID:509917
KEGG:bta:509917 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
InParanoid:Q5E9A3 KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K
NextBio:20869194 Uniprot:Q5E9A3
Length = 356
Score = 207 (77.9 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 51/177 (28%), Positives = 97/177 (54%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G ++ + +SGARI +S + +RII ++G + I +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN-----CPERIITLTGPTNAIFK 70
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
A ++IDKL ++++ ++ LRL+VP + CGS+IGK G IK + + A
Sbjct: 71 AFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQ 130
Query: 155 IKIS--RLDHSYYGLNDRLVTLTG---TLDEQMRALELILLKLSEDTLYSQTMTVPY 206
++++ L +S +R +T+ G ++ E ++ + L++L+ + + MT+PY
Sbjct: 131 VQVAGDMLPNS----TERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPY 183
Score = 117 (46.2 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 256 TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRS 315
T+ LTI + IG ++GR G NI EI Q+SGA+IK+++ + G+S R+VTI+G S
Sbjct: 281 THELTI--PNNLIGCIIGRQGANINEIRQMSGAQIKIANPVE---GSSGRQVTITGSAAS 335
Query: 316 IRTAESMIMQKVA 328
I A+ +I +++
Sbjct: 336 ISLAQYLINARLS 348
Score = 105 (42.0 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 24/85 (28%), Positives = 50/85 (58%)
Query: 27 SSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIM 86
S+ + P +R +V G++IGKGG I + + +GA++Q++ + P +T+R I
Sbjct: 90 STAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAG--DMLPNSTERAIT 147
Query: 87 ISG---TIDEILRAVDLVIDKLLTE 108
I+G ++ E ++ + LV+ + L++
Sbjct: 148 IAGVPQSVTECVKQICLVMLETLSQ 172
Score = 99 (39.9 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 29/79 (36%), Positives = 40/79 (50%)
Query: 117 DVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTG 176
D T+T L +PN+ G IIG+ GA I S A IKI+ + G + R VT+TG
Sbjct: 275 DASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIA---NPVEGSSGRQVTITG 331
Query: 177 TLDEQMRALELILLKLSED 195
+ A LI +LS +
Sbjct: 332 SAASISLAQYLINARLSSE 350
>UNIPROTKB|J9P7Y9 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5093
KO:K12889 OMA:RNISERN EMBL:AAEX03007630 RefSeq:XP_538537.1
Ensembl:ENSCAFT00000005324 GeneID:481417 KEGG:cfa:481417
Uniprot:J9P7Y9
Length = 356
Score = 207 (77.9 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 51/177 (28%), Positives = 97/177 (54%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G ++ + +SGARI +S + +RII ++G + I +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN-----CPERIITLTGPTNAIFK 70
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
A ++IDKL ++++ ++ LRL+VP + CGS+IGK G IK + + A
Sbjct: 71 AFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQ 130
Query: 155 IKIS--RLDHSYYGLNDRLVTLTG---TLDEQMRALELILLKLSEDTLYSQTMTVPY 206
++++ L +S +R +T+ G ++ E ++ + L++L+ + + MT+PY
Sbjct: 131 VQVAGDMLPNS----TERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPY 183
Score = 117 (46.2 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 256 TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRS 315
T+ LTI + IG ++GR G NI EI Q+SGA+IK+++ + G+S R+VTI+G S
Sbjct: 281 THELTI--PNNLIGCIIGRQGANINEIRQMSGAQIKIANPVE---GSSGRQVTITGSAAS 335
Query: 316 IRTAESMIMQKVA 328
I A+ +I +++
Sbjct: 336 ISLAQYLINARLS 348
Score = 105 (42.0 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 24/85 (28%), Positives = 50/85 (58%)
Query: 27 SSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIM 86
S+ + P +R +V G++IGKGG I + + +GA++Q++ + P +T+R I
Sbjct: 90 STAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAG--DMLPNSTERAIT 147
Query: 87 ISG---TIDEILRAVDLVIDKLLTE 108
I+G ++ E ++ + LV+ + L++
Sbjct: 148 IAGVPQSVTECVKQICLVMLETLSQ 172
Score = 99 (39.9 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 29/79 (36%), Positives = 40/79 (50%)
Query: 117 DVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTG 176
D T+T L +PN+ G IIG+ GA I S A IKI+ + G + R VT+TG
Sbjct: 275 DASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIA---NPVEGSSGRQVTITG 331
Query: 177 TLDEQMRALELILLKLSED 195
+ A LI +LS +
Sbjct: 332 SAASISLAQYLINARLSSE 350
>UNIPROTKB|Q15365 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9606
"Homo sapiens" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
[GO:0016071 "mRNA metabolic process" evidence=NAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0003723 GO:GO:0003697 GO:GO:0030529 GO:GO:0000398
eggNOG:NOG315872 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K EMBL:X78137 EMBL:U24223
EMBL:Z29505 EMBL:BC039742 IPI:IPI00016610 RefSeq:NP_006187.2
UniGene:Hs.2853 PDB:1WVN PDB:1ZTG PDB:3VKE PDBsum:1WVN PDBsum:1ZTG
PDBsum:3VKE ProteinModelPortal:Q15365 SMR:Q15365 DIP:DIP-38136N
IntAct:Q15365 MINT:MINT-96267 STRING:Q15365 PhosphoSite:Q15365
DMDM:42560548 OGP:Q15365 REPRODUCTION-2DPAGE:IPI00016610
UCD-2DPAGE:Q15365 PaxDb:Q15365 PeptideAtlas:Q15365 PRIDE:Q15365
DNASU:5093 Ensembl:ENST00000303577 GeneID:5093 KEGG:hsa:5093
UCSC:uc002sgf.3 GeneCards:GC02P070314 HGNC:HGNC:8647 HPA:CAB037113
MIM:601209 neXtProt:NX_Q15365 PharmGKB:PA32986 InParanoid:Q15365
PhylomeDB:Q15365 ChiTaRS:PCBP1 EvolutionaryTrace:Q15365
GenomeRNAi:5093 NextBio:19644 ArrayExpress:Q15365 Bgee:Q15365
CleanEx:HS_PCBP1 Genevestigator:Q15365 GermOnline:ENSG00000169564
Uniprot:Q15365
Length = 356
Score = 207 (77.9 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 51/177 (28%), Positives = 97/177 (54%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G ++ + +SGARI +S + +RII ++G + I +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN-----CPERIITLTGPTNAIFK 70
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
A ++IDKL ++++ ++ LRL+VP + CGS+IGK G IK + + A
Sbjct: 71 AFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQ 130
Query: 155 IKIS--RLDHSYYGLNDRLVTLTG---TLDEQMRALELILLKLSEDTLYSQTMTVPY 206
++++ L +S +R +T+ G ++ E ++ + L++L+ + + MT+PY
Sbjct: 131 VQVAGDMLPNS----TERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPY 183
Score = 117 (46.2 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 256 TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRS 315
T+ LTI + IG ++GR G NI EI Q+SGA+IK+++ + G+S R+VTI+G S
Sbjct: 281 THELTI--PNNLIGCIIGRQGANINEIRQMSGAQIKIANPVE---GSSGRQVTITGSAAS 335
Query: 316 IRTAESMIMQKVA 328
I A+ +I +++
Sbjct: 336 ISLAQYLINARLS 348
Score = 105 (42.0 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 24/85 (28%), Positives = 50/85 (58%)
Query: 27 SSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIM 86
S+ + P +R +V G++IGKGG I + + +GA++Q++ + P +T+R I
Sbjct: 90 STAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAG--DMLPNSTERAIT 147
Query: 87 ISG---TIDEILRAVDLVIDKLLTE 108
I+G ++ E ++ + LV+ + L++
Sbjct: 148 IAGVPQSVTECVKQICLVMLETLSQ 172
Score = 99 (39.9 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 29/79 (36%), Positives = 40/79 (50%)
Query: 117 DVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTG 176
D T+T L +PN+ G IIG+ GA I S A IKI+ + G + R VT+TG
Sbjct: 275 DASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIA---NPVEGSSGRQVTITG 331
Query: 177 TLDEQMRALELILLKLSED 195
+ A LI +LS +
Sbjct: 332 SAASISLAQYLINARLSSE 350
>UNIPROTKB|I3LEC2 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0003697 GeneTree:ENSGT00550000074311 KO:K12889
OMA:RNISERN EMBL:CU928518 RefSeq:XP_003125105.1
Ensembl:ENSSSCT00000028976 GeneID:100511501 KEGG:ssc:100511501
Uniprot:I3LEC2
Length = 356
Score = 207 (77.9 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 51/177 (28%), Positives = 97/177 (54%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G ++ + +SGARI +S + +RII ++G + I +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN-----CPERIITLTGPTNAIFK 70
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
A ++IDKL ++++ ++ LRL+VP + CGS+IGK G IK + + A
Sbjct: 71 AFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQ 130
Query: 155 IKIS--RLDHSYYGLNDRLVTLTG---TLDEQMRALELILLKLSEDTLYSQTMTVPY 206
++++ L +S +R +T+ G ++ E ++ + L++L+ + + MT+PY
Sbjct: 131 VQVAGDMLPNS----TERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPY 183
Score = 117 (46.2 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 256 TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRS 315
T+ LTI + IG ++GR G NI EI Q+SGA+IK+++ + G+S R+VTI+G S
Sbjct: 281 THELTI--PNNLIGCIIGRQGANINEIRQMSGAQIKIANPVE---GSSGRQVTITGSAAS 335
Query: 316 IRTAESMIMQKVA 328
I A+ +I +++
Sbjct: 336 ISLAQYLINARLS 348
Score = 105 (42.0 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 24/85 (28%), Positives = 50/85 (58%)
Query: 27 SSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIM 86
S+ + P +R +V G++IGKGG I + + +GA++Q++ + P +T+R I
Sbjct: 90 STAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAG--DMLPNSTERAIT 147
Query: 87 ISG---TIDEILRAVDLVIDKLLTE 108
I+G ++ E ++ + LV+ + L++
Sbjct: 148 IAGVPQSVTECVKQICLVMLETLSQ 172
Score = 99 (39.9 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 29/79 (36%), Positives = 40/79 (50%)
Query: 117 DVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTG 176
D T+T L +PN+ G IIG+ GA I S A IKI+ + G + R VT+TG
Sbjct: 275 DASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIA---NPVEGSSGRQVTITG 331
Query: 177 TLDEQMRALELILLKLSED 195
+ A LI +LS +
Sbjct: 332 SAASISLAQYLINARLSSE 350
>MGI|MGI:1345635 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008494 "translation activator
activity" evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=TAS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:1345635 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 GO:GO:0008494 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K12889
OMA:RNISERN OrthoDB:EOG46WZ8K ChiTaRS:PCBP1 EMBL:AF139894
EMBL:AF139895 EMBL:BC069915 EMBL:BC004793 IPI:IPI00128904
RefSeq:NP_035995.1 UniGene:Mm.274146 ProteinModelPortal:P60335
SMR:P60335 IntAct:P60335 STRING:P60335 PhosphoSite:P60335
REPRODUCTION-2DPAGE:IPI00128904 REPRODUCTION-2DPAGE:P60335
PaxDb:P60335 PRIDE:P60335 Ensembl:ENSMUST00000053015 GeneID:23983
KEGG:mmu:23983 InParanoid:P60335 NextBio:303869 Bgee:P60335
CleanEx:MM_PCBP1 Genevestigator:P60335
GermOnline:ENSMUSG00000051695 Uniprot:P60335
Length = 356
Score = 207 (77.9 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 51/177 (28%), Positives = 97/177 (54%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G ++ + +SGARI +S + +RII ++G + I +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN-----CPERIITLTGPTNAIFK 70
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
A ++IDKL ++++ ++ LRL+VP + CGS+IGK G IK + + A
Sbjct: 71 AFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQ 130
Query: 155 IKIS--RLDHSYYGLNDRLVTLTG---TLDEQMRALELILLKLSEDTLYSQTMTVPY 206
++++ L +S +R +T+ G ++ E ++ + L++L+ + + MT+PY
Sbjct: 131 VQVAGDMLPNS----TERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPY 183
Score = 117 (46.2 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 256 TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRS 315
T+ LTI + IG ++GR G NI EI Q+SGA+IK+++ + G+S R+VTI+G S
Sbjct: 281 THELTI--PNNLIGCIIGRQGANINEIRQMSGAQIKIANPVE---GSSGRQVTITGSAAS 335
Query: 316 IRTAESMIMQKVA 328
I A+ +I +++
Sbjct: 336 ISLAQYLINARLS 348
Score = 105 (42.0 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 24/85 (28%), Positives = 50/85 (58%)
Query: 27 SSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIM 86
S+ + P +R +V G++IGKGG I + + +GA++Q++ + P +T+R I
Sbjct: 90 STAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAG--DMLPNSTERAIT 147
Query: 87 ISG---TIDEILRAVDLVIDKLLTE 108
I+G ++ E ++ + LV+ + L++
Sbjct: 148 IAGVPQSVTECVKQICLVMLETLSQ 172
Score = 99 (39.9 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 29/79 (36%), Positives = 40/79 (50%)
Query: 117 DVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTG 176
D T+T L +PN+ G IIG+ GA I S A IKI+ + G + R VT+TG
Sbjct: 275 DASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIA---NPVEGSSGRQVTITG 331
Query: 177 TLDEQMRALELILLKLSED 195
+ A LI +LS +
Sbjct: 332 SAASISLAQYLINARLSSE 350
>RGD|1561319 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1561319 GO:GO:0003723 GO:GO:0003697 OMA:RNISERN
OrthoDB:EOG46WZ8K IPI:IPI00882480 ProteinModelPortal:D3ZS68
SMR:D3ZS68 PRIDE:D3ZS68 Ensembl:ENSRNOT00000023806 UCSC:RGD:1561319
Uniprot:D3ZS68
Length = 356
Score = 207 (77.9 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 51/177 (28%), Positives = 97/177 (54%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G ++ + +SGARI +S + +RII ++G + I +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN-----CPERIITLTGPTNAIFK 70
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
A ++IDKL ++++ ++ LRL+VP + CGS+IGK G IK + + A
Sbjct: 71 AFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQ 130
Query: 155 IKIS--RLDHSYYGLNDRLVTLTG---TLDEQMRALELILLKLSEDTLYSQTMTVPY 206
++++ L +S +R +T+ G ++ E ++ + L++L+ + + MT+PY
Sbjct: 131 VQVAGDMLPNS----TERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPY 183
Score = 117 (46.2 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 256 TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRS 315
T+ LTI + IG ++GR G NI EI Q+SGA+IK+++ + G+S R+VTI+G S
Sbjct: 281 THELTI--PNNLIGCIIGRQGANINEIRQMSGAQIKIANPVE---GSSGRQVTITGSAAS 335
Query: 316 IRTAESMIMQKVA 328
I A+ +I +++
Sbjct: 336 ISLAQYLINARLS 348
Score = 105 (42.0 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 24/85 (28%), Positives = 50/85 (58%)
Query: 27 SSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIM 86
S+ + P +R +V G++IGKGG I + + +GA++Q++ + P +T+R I
Sbjct: 90 STAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAG--DMLPNSTERAIT 147
Query: 87 ISG---TIDEILRAVDLVIDKLLTE 108
I+G ++ E ++ + LV+ + L++
Sbjct: 148 IAGVPQSVTECVKQICLVMLETLSQ 172
Score = 99 (39.9 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 29/79 (36%), Positives = 40/79 (50%)
Query: 117 DVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTG 176
D T+T L +PN+ G IIG+ GA I S A IKI+ + G + R VT+TG
Sbjct: 275 DASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIA---NPVEGSSGRQVTITG 331
Query: 177 TLDEQMRALELILLKLSED 195
+ A LI +LS +
Sbjct: 332 SAASISLAQYLINARLSSE 350
>RGD|1307430 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307430 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 UniGene:Rn.107537
EMBL:BC079196 IPI:IPI00464574 RefSeq:NP_001011945.1 SMR:Q6AY48
IntAct:Q6AY48 MINT:MINT-7138861 Ensembl:ENSRNOT00000001675
GeneID:294336 KEGG:rno:294336 NextBio:638024 Genevestigator:Q6AY48
Uniprot:Q6AY48
Length = 319
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 89/306 (29%), Positives = 147/306 (48%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G T+ + +SGARI +S + +RI+ I+G D I +
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN-----CPERIVTITGPTDAIFK 70
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
A ++ K ++ +K LRL+VP S CGS+IGK G+ IK + + A
Sbjct: 71 AFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQ 130
Query: 155 IKIS--RLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPY----TY 208
++++ L +S +R VT++GT D ++ ++ I + + E + T+PY
Sbjct: 131 VQVAGDMLPNS----TERAVTISGTPDAIIQCVKQICVVMLESP--PKGATIPYRPKPAS 184
Query: 209 AGVFFSGFHGMP----YGXXXXXXXXXXHNTAAHYGP-------NMGGRKFQNNKDDRTN 257
V F+G Y H A P N + T+
Sbjct: 185 TPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGLDASPPASTH 244
Query: 258 SLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIR 317
LTI ++ IG ++GR G I EI Q+SGA+IK+++ + G+SER++TI+G +I
Sbjct: 245 ELTI--PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE---GSSERQITITGTPANIS 299
Query: 318 TAESMI 323
A+ +I
Sbjct: 300 LAQYLI 305
Score = 133 (51.9 bits), Expect = 8.8e-11, Sum P(2) = 8.8e-11
Identities = 29/78 (37%), Positives = 49/78 (62%)
Query: 23 VKSLSSDP-TEKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGT 80
+ S+S+ P T KP +R +V G++IGKGGS I + + +GA++Q++ + P +
Sbjct: 84 INSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG--DMLPNS 141
Query: 81 TDRIIMISGTIDEILRAV 98
T+R + ISGT D I++ V
Sbjct: 142 TERAVTISGTPDAIIQCV 159
Score = 82 (33.9 bits), Expect = 8.8e-11, Sum P(2) = 8.8e-11
Identities = 24/70 (34%), Positives = 34/70 (48%)
Query: 126 LIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRAL 185
L +PN G IIG+ G I S A IKI+ G ++R +T+TGT A
Sbjct: 246 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE---GSSERQITITGTPANISLAQ 302
Query: 186 ELILLKLSED 195
LI +L+ +
Sbjct: 303 YLINARLTSE 312
>UNIPROTKB|J3KQU3 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 Ensembl:ENST00000449198 Uniprot:J3KQU3
Length = 277
Score = 164 (62.8 bits), Expect = 4.2e-23, Sum P(2) = 4.2e-23
Identities = 32/74 (43%), Positives = 52/74 (70%)
Query: 36 YIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEIL 95
+++ L+ + AG++IGKGG TI Q ++GA I+LS+S +F+PGTT+R+ +I GT+ E L
Sbjct: 10 FLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTV-EAL 68
Query: 96 RAVDLVIDKLLTEL 109
AV I + + E+
Sbjct: 69 NAVHGFIAEKIREM 82
Score = 159 (61.0 bits), Expect = 4.2e-23, Sum P(2) = 4.2e-23
Identities = 37/101 (36%), Positives = 61/101 (60%)
Query: 123 KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQM 182
++++IVPNS+ G IIGK GAT+K+ M+ S A +++S+ L +R+VT++G ++
Sbjct: 132 QVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGI-NLQERVVTVSGEPEQNR 190
Query: 183 RALELILLKLSEDTLYSQTMTVPYT-YAG-VFFSGFHGMPY 221
+A+ELI+ K+ ED + + Y G V S G PY
Sbjct: 191 KAVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPY 231
Score = 147 (56.8 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 32/89 (35%), Positives = 52/89 (58%)
Query: 19 STAPVKSLSSDP--TEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEF 76
S KS SDP T + ++ +V N AG +IGKGG+T+ QSGA +QLS+ +
Sbjct: 113 SPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDG 172
Query: 77 FPGTTDRIIMISGTIDEILRAVDLVIDKL 105
+R++ +SG ++ +AV+L+I K+
Sbjct: 173 I-NLQERVVTVSGEPEQNRKAVELIIQKI 200
Score = 115 (45.5 bits), Expect = 0.00030, P = 0.00030
Identities = 22/77 (28%), Positives = 43/77 (55%)
Query: 251 NKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTIS 310
+++D L + + G ++G+GG+ I+++ + +GA IK+S DF+ GT+ER I
Sbjct: 3 SEEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQ 62
Query: 311 GPQRSIRTAESMIMQKV 327
G ++ I +K+
Sbjct: 63 GTVEALNAVHGFIAEKI 79
Score = 110 (43.8 bits), Expect = 5.4e-18, Sum P(2) = 5.4e-18
Identities = 24/73 (32%), Positives = 41/73 (56%)
Query: 255 RTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQR 314
R N + I V + G ++G+GG + + + SGA +++S + D + ER VT+SG
Sbjct: 129 RANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGIN-LQERVVTVSGEPE 187
Query: 315 SIRTAESMIMQKV 327
R A +I+QK+
Sbjct: 188 QNRKAVELIIQKI 200
Score = 107 (42.7 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMR 183
L++++P+ + GSIIGK G TI ++ A IK+S+ Y G +R+ + GT+ E +
Sbjct: 11 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTV-EALN 69
Query: 184 ALE-LILLKLSE 194
A+ I K+ E
Sbjct: 70 AVHGFIAEKIRE 81
>UNIPROTKB|F1NP94 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:AADN02003296 EMBL:AADN02003297 EMBL:AADN02003298
EMBL:AADN02003299 EMBL:AADN02003300 EMBL:AADN02003301
EMBL:AADN02003302 EMBL:AADN02003303 EMBL:AADN02003304
EMBL:AADN02003305 EMBL:AADN02003306 EMBL:AADN02003307
EMBL:AADN02003308 EMBL:AADN02003309 EMBL:AADN02003310
EMBL:AADN02003311 EMBL:AADN02003312 EMBL:AADN02003313
EMBL:AADN02003314 EMBL:AADN02003315 IPI:IPI00584544
Ensembl:ENSGALT00000016013 ArrayExpress:F1NP94 Uniprot:F1NP94
Length = 413
Score = 160 (61.4 bits), Expect = 5.7e-23, Sum P(3) = 5.7e-23
Identities = 37/101 (36%), Positives = 61/101 (60%)
Query: 123 KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQM 182
++++IVPNS+ G IIGK GAT+K+ M+ S A +++S+ L +R+VT++G ++
Sbjct: 79 QVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI-NLQERVVTVSGEPEQNR 137
Query: 183 RALELILLKLSEDTLYSQTMTVPYT-YAG-VFFSGFHGMPY 221
+A+ELI+ K+ ED + + Y G V S G PY
Sbjct: 138 KAVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPY 178
Score = 159 (61.0 bits), Expect = 5.7e-23, Sum P(3) = 5.7e-23
Identities = 27/81 (33%), Positives = 53/81 (65%)
Query: 249 QNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVT 308
+ + D + + I V + +G ++G+GG+ ++E +++GARI++S +G+F GT RKVT
Sbjct: 320 EKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVT 379
Query: 309 ISGPQRSIRTAESMIMQKVAY 329
I+G + + A+ +I Q++ Y
Sbjct: 380 ITGTPAATQAAQYLITQRITY 400
Score = 148 (57.2 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
Identities = 32/89 (35%), Positives = 52/89 (58%)
Query: 19 STAPVKSLSSDP--TEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEF 76
S KS SDP T + ++ +V N AG +IGKGG+T+ QSGA +QLS+ +
Sbjct: 60 SPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDG 119
Query: 77 FPGTTDRIIMISGTIDEILRAVDLVIDKL 105
+R++ +SG ++ +AV+L+I K+
Sbjct: 120 I-NLQERVVTVSGEPEQNRKAVELIIQKI 147
Score = 139 (54.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 33/94 (35%), Positives = 54/94 (57%)
Query: 19 STAPVKSLSSDPTEKPT-----YIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRS 73
+ +P+ + + TEK T + V L GA++GKGG T+ ++Q +GARIQ+S+
Sbjct: 307 AASPLAASAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKK 366
Query: 74 HEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLT 107
EF PGT +R + I+GT +A +I + +T
Sbjct: 367 GEFVPGTRNRKVTITGT-PAATQAAQYLITQRIT 399
Score = 111 (44.1 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 255 RTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQR 314
R N + I V + G ++G+GG + I + SGA +++S + D + ER VT+SG
Sbjct: 76 RANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGIN-LQERVVTVSGEPE 134
Query: 315 SIRTAESMIMQKV 327
R A +I+QK+
Sbjct: 135 QNRKAVELIIQKI 147
Score = 100 (40.3 bits), Expect = 5.9e-14, Sum P(2) = 5.9e-14
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 109 LHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLN 168
L E D G+K + + VP + G+I+GK G T+ + + + A I+IS+ G
Sbjct: 317 LGTEKSTD--GSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTR 374
Query: 169 DRLVTLTGTLDEQMRALELILLKLS 193
+R VT+TGT A LI +++
Sbjct: 375 NRKVTITGTPAATQAAQYLITQRIT 399
Score = 49 (22.3 bits), Expect = 5.7e-23, Sum P(3) = 5.7e-23
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 80 TTDRIIMISGTIDEILRAVDLVIDKLLTEL 109
TT+R+ +I GT+ E L AV I + + E+
Sbjct: 1 TTERVCLIQGTV-EALNAVHGFIAEKIREM 29
>UNIPROTKB|F1MBI6 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:DAAA02052552
EMBL:DAAA02052553 IPI:IPI01028075 Ensembl:ENSBTAT00000031237
Uniprot:F1MBI6
Length = 389
Score = 170 (64.9 bits), Expect = 7.0e-23, Sum P(2) = 7.0e-23
Identities = 51/156 (32%), Positives = 85/156 (54%)
Query: 80 TTDRIIMISGTIDEILRAVDLVIDKLLTELHAE-DQADDVGT---KT--------KLRLI 127
TT+R+ +I GT+ E L AV I + + E+ + + V +T ++++I
Sbjct: 1 TTERVCLIQGTV-EALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQVKII 59
Query: 128 VPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALEL 187
VPNS+ G IIGK GAT+K+ M+ S A +++S+ L +R+VT++G ++ +A+EL
Sbjct: 60 VPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI-NLQERVVTVSGEPEQNRKAVEL 118
Query: 188 ILLKLSEDTLYSQTMTVPYT-YAG-VFFSGFHGMPY 221
I+ K+ ED + + Y G V S G PY
Sbjct: 119 IIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPY 154
Score = 159 (61.0 bits), Expect = 7.0e-23, Sum P(2) = 7.0e-23
Identities = 27/81 (33%), Positives = 53/81 (65%)
Query: 249 QNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVT 308
+ + D + + I V + +G ++G+GG+ ++E +++GARI++S +G+F GT RKVT
Sbjct: 296 EKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVT 355
Query: 309 ISGPQRSIRTAESMIMQKVAY 329
I+G + + A+ +I Q++ Y
Sbjct: 356 ITGTPAATQAAQYLITQRITY 376
Score = 139 (54.0 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 32/89 (35%), Positives = 50/89 (56%)
Query: 20 TAPVKSLSSDPTEKPTYIR---FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEF 76
T PV L T P I+ +V N AG +IGKGG+T+ QSGA +QLS+ +
Sbjct: 36 TEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDG 95
Query: 77 FPGTTDRIIMISGTIDEILRAVDLVIDKL 105
+R++ +SG ++ +AV+L+I K+
Sbjct: 96 I-NLQERVVTVSGEPEQNRKAVELIIQKI 123
Score = 139 (54.0 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 33/94 (35%), Positives = 54/94 (57%)
Query: 19 STAPVKSLSSDPTEKPT-----YIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRS 73
+ +P+ + + TEK T + V L GA++GKGG T+ ++Q +GARIQ+S+
Sbjct: 283 AASPLAASAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKK 342
Query: 74 HEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLT 107
EF PGT +R + I+GT +A +I + +T
Sbjct: 343 GEFVPGTRNRKVTITGT-PAATQAAQYLITQRIT 375
Score = 100 (40.3 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 109 LHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLN 168
L E D G+K + + VP + G+I+GK G T+ + + + A I+IS+ G
Sbjct: 293 LGTEKSTD--GSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTR 350
Query: 169 DRLVTLTGTLDEQMRALELILLKLS 193
+R VT+TGT A LI +++
Sbjct: 351 NRKVTITGTPAATQAAQYLITQRIT 375
>FB|FBgn0262737 [details] [associations]
symbol:mub "mushroom-body expressed" species:7227 "Drosophila
melanogaster" [GO:0017130 "poly(C) RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IC] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:AE014296
GO:GO:0003723 GO:GO:0000381 GeneTree:ENSGT00550000074311 KO:K13162
EMBL:BT030417 RefSeq:NP_001163493.1 RefSeq:NP_001246873.1
UniGene:Dm.2502 SMR:A4IJ59 STRING:A4IJ59 EnsemblMetazoa:FBtr0301364
EnsemblMetazoa:FBtr0304980 GeneID:40436 KEGG:dme:Dmel_CG7437
CTD:40436 FlyBase:FBgn0262737 GenomeRNAi:40436 NextBio:818772
Uniprot:A4IJ59
Length = 557
Score = 201 (75.8 bits), Expect = 7.1e-23, Sum P(2) = 7.1e-23
Identities = 57/182 (31%), Positives = 94/182 (51%)
Query: 29 DPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMIS 88
DP+ T IR ++ G++IGK G +N F+ +SGA+I +S +RI+ +S
Sbjct: 19 DPSVTLT-IRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDG-----SCPERIVTVS 72
Query: 89 GTIDEILRAVDLVIDKLLTELHAEDQADDVG----TKTKLRLIVPNSSCGSIIGKAGATI 144
GT + I A L+ K ++ +DVG T+ +RLIVP S CGS+IGK+G+ I
Sbjct: 73 GTTNAIFSAFTLITKKF-------EEFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKI 125
Query: 145 KSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTV 204
K + I+++ +R VTL+G+ ++ + + I L + E + T+
Sbjct: 126 KEIRQTTGCSIQVA--SEMLPNSTERAVTLSGSAEQITQCIYQICLVMLESP--PRGATI 181
Query: 205 PY 206
PY
Sbjct: 182 PY 183
Score = 128 (50.1 bits), Expect = 7.1e-23, Sum P(2) = 7.1e-23
Identities = 29/87 (33%), Positives = 50/87 (57%)
Query: 250 NNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTI 309
N + + +T V+++ IG ++G+GG I EI QISGA I++S+ + G ++R +TI
Sbjct: 281 NRAQQQQHEMT--VSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITI 338
Query: 310 SGPQRSIRTAESMIMQKVAYASDRLMD 336
SG S+ A+ +I V L++
Sbjct: 339 SGNPDSVALAQYLINMSVELQKANLLE 365
Score = 121 (47.7 bits), Expect = 0.00021, P = 0.00021
Identities = 28/61 (45%), Positives = 36/61 (59%)
Query: 41 VSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDL 100
VSN L G +IGKGG+ I + + SGA I++S E G TDR I ISG D + A L
Sbjct: 292 VSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVALAQYL 351
Query: 101 V 101
+
Sbjct: 352 I 352
Score = 101 (40.6 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 29/79 (36%), Positives = 40/79 (50%)
Query: 116 DDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLT 175
+D +RLI+ GSIIGK G + F ++S A I IS D S +R+VT++
Sbjct: 18 EDPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINIS--DGS---CPERIVTVS 72
Query: 176 GTLDEQMRALELILLKLSE 194
GT + A LI K E
Sbjct: 73 GTTNAIFSAFTLITKKFEE 91
Score = 76 (31.8 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 269 GFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSI 316
G ++G+ G I EI Q +G I+V+ + ++ER VT+SG I
Sbjct: 115 GSLIGKSGSKIKEIRQTTGCSIQVAS--EMLPNSTERAVTLSGSAEQI 160
>UNIPROTKB|C9J0A4 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00385206 ProteinModelPortal:C9J0A4 SMR:C9J0A4
STRING:C9J0A4 Ensembl:ENST00000471622 ArrayExpress:C9J0A4
Bgee:C9J0A4 Uniprot:C9J0A4
Length = 323
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 92/312 (29%), Positives = 143/312 (45%)
Query: 26 LSSDPTEKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRI 84
L +P T +R L+ G++IGK G T+ + QS ARI +S +RI
Sbjct: 8 LEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----SCPERI 62
Query: 85 IMISGTIDEILRAVDLVIDKLLTELHAED-QADDVGTK-TKLRLIVPNSSCGSIIGKAGA 142
I+G+ + AV ++ KL +L A +V LRL++P S CGS+IGKAG
Sbjct: 63 TTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 143 TIKSFMDDSQAVIKISR--LDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQ 200
IK + + A ++++ L +S +R VT++G D + + I + E +
Sbjct: 123 KIKEIRETTGAQVQVAGDLLPNS----TERAVTVSGVPDAIILCVRQICAVILESP--PK 176
Query: 201 TMTVPY----TYAGVFFSGFHGMP----YGXXXXXXXXXXHNTAAHYGPNMGGRKFQN-N 251
T+PY + V S G YG ++H P +
Sbjct: 177 GATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVVPGLD 236
Query: 252 KDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISG 311
+T+S V ++ IG V+GR G I EI Q+SGA IK+ ++ + G ER VTI+G
Sbjct: 237 PGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAE---GAGERHVTITG 293
Query: 312 PQRSIRTAESMI 323
SI A+ +I
Sbjct: 294 SPVSIALAQYLI 305
>UNIPROTKB|Q0VCU0 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0003677 GO:GO:0003723
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K13162 EMBL:BC120009
IPI:IPI00707807 RefSeq:NP_001068751.1 UniGene:Bt.7587
ProteinModelPortal:Q0VCU0 SMR:Q0VCU0 PRIDE:Q0VCU0
Ensembl:ENSBTAT00000024779 GeneID:506889 KEGG:bta:506889 CTD:57060
InParanoid:Q0VCU0 OMA:MSSSDAG OrthoDB:EOG48D0VR NextBio:20867786
Uniprot:Q0VCU0
Length = 403
Score = 264 (98.0 bits), Expect = 1.1e-22, P = 1.1e-22
Identities = 92/312 (29%), Positives = 142/312 (45%)
Query: 26 LSSDPTEKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRI 84
L +P T +R L+ G++IGK G T+ + QS ARI +S +RI
Sbjct: 8 LEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----SCPERI 62
Query: 85 IMISGTIDEILRAVDLVIDKLLTELHAED-QADDVGTK-TKLRLIVPNSSCGSIIGKAGA 142
I+G+ + AV ++ KL +L A +V LRL++P S CGS+IGKAG
Sbjct: 63 TTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 143 TIKSFMDDSQAVIKISR--LDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQ 200
IK + + A ++++ L +S +R VT++G D + + I + E +
Sbjct: 123 KIKEIRETTGAQVQVAGDLLPNS----TERAVTVSGVPDAIILCVRQICAVILESP--PK 176
Query: 201 TMTVPY----TYAGVFFSGFHGMP----YGXXXXXXXXXXHNTAAHYGPNMGGRKFQN-N 251
T+PY + V S G YG + H P +
Sbjct: 177 GATIPYHPSLSLGTVLLSTNQGFSVQGQYGTVTPAEVTKLQQLSGHAVPFASPSMVPGLD 236
Query: 252 KDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISG 311
+T+S V ++ IG V+GR G I EI Q+SGA IK+ ++ + G ER VTI+G
Sbjct: 237 PSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAE---GAGERHVTITG 293
Query: 312 PQRSIRTAESMI 323
SI A+ +I
Sbjct: 294 SPVSIALAQYLI 305
>UNIPROTKB|E2RG64 [details] [associations]
symbol:PCBP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 KO:K13162
CTD:57060 OMA:MSSSDAG EMBL:AAEX03012201 RefSeq:XP_849987.1
Ensembl:ENSCAFT00000015946 GeneID:476603 KEGG:cfa:476603
NextBio:20852230 Uniprot:E2RG64
Length = 403
Score = 264 (98.0 bits), Expect = 1.1e-22, P = 1.1e-22
Identities = 92/312 (29%), Positives = 142/312 (45%)
Query: 26 LSSDPTEKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRI 84
L +P T +R L+ G++IGK G T+ + QS ARI +S +RI
Sbjct: 8 LEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----SCPERI 62
Query: 85 IMISGTIDEILRAVDLVIDKLLTELHAED-QADDVGTK-TKLRLIVPNSSCGSIIGKAGA 142
I+G+ + AV ++ KL +L A +V LRL++P S CGS+IGKAG
Sbjct: 63 TTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 143 TIKSFMDDSQAVIKISR--LDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQ 200
IK + + A ++++ L +S +R VT++G D + + I + E +
Sbjct: 123 KIKEIRETTGAQVQVAGDLLPNS----TERAVTVSGVPDAIILCVRQICAVILESP--PK 176
Query: 201 TMTVPY----TYAGVFFSGFHGMP----YGXXXXXXXXXXHNTAAHYGPNMGGRKFQN-N 251
T+PY + V S G YG + H P +
Sbjct: 177 GATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSMVPGLD 236
Query: 252 KDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISG 311
+T+S V ++ IG V+GR G I EI Q+SGA IK+ ++ + G ER VTI+G
Sbjct: 237 PGAQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAE---GAGERHVTITG 293
Query: 312 PQRSIRTAESMI 323
SI A+ +I
Sbjct: 294 SPVSIALAQYLI 305
>RGD|1307910 [details] [associations]
symbol:Pcbp4 "poly(rC) binding protein 4" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO] [GO:0006977
"DNA damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=ISO] [GO:0007050 "cell
cycle arrest" evidence=ISO] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307910 GO:GO:0003723
GeneTree:ENSGT00550000074311 KO:K13162 CTD:57060 OMA:MSSSDAG
OrthoDB:EOG48D0VR IPI:IPI00366708 RefSeq:NP_001178812.1
UniGene:Rn.40405 Ensembl:ENSRNOT00000017139 GeneID:363133
KEGG:rno:363133 UCSC:RGD:1307910 NextBio:682555 Uniprot:D3ZCS3
Length = 403
Score = 264 (98.0 bits), Expect = 1.1e-22, P = 1.1e-22
Identities = 92/312 (29%), Positives = 141/312 (45%)
Query: 26 LSSDPTEKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRI 84
L +P T +R L+ G++IGK G T+ + QS ARI +S +RI
Sbjct: 8 LEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----SCPERI 62
Query: 85 IMISGTIDEILRAVDLVIDKLLTELHAED-QADDVGTK-TKLRLIVPNSSCGSIIGKAGA 142
I+G+ + AV ++ KL +L A V LRL++P S CGS+IGKAG
Sbjct: 63 TTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 143 TIKSFMDDSQAVIKISR--LDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQ 200
IK + + A ++++ L +S +R VT++G D + + I + E +
Sbjct: 123 KIKEIRETTGAQVQVAGDLLPNS----TERAVTVSGVPDAIILCVRQICAVILESP--PK 176
Query: 201 TMTVPY----TYAGVFFSGFHGMP----YGXXXXXXXXXXHNTAAHYGPNMGGRKFQN-N 251
T+PY + V S G YG + H P +
Sbjct: 177 GATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSVVPGLD 236
Query: 252 KDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISG 311
+T+S V ++ IG V+GR G I EI Q+SGA IK+ ++ + G ER VTI+G
Sbjct: 237 PSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAE---GAGERHVTITG 293
Query: 312 PQRSIRTAESMI 323
SI A+ +I
Sbjct: 294 SPVSIALAQYLI 305
>UNIPROTKB|I3LRN5 [details] [associations]
symbol:PCBP4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 OMA:MSSSDAG
EMBL:FP102591 Ensembl:ENSSSCT00000026653 Uniprot:I3LRN5
Length = 404
Score = 264 (98.0 bits), Expect = 1.1e-22, P = 1.1e-22
Identities = 93/313 (29%), Positives = 142/313 (45%)
Query: 26 LSSDPTEKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRI 84
L +P T +R L+ G++IGK G T+ + QS ARI +S +RI
Sbjct: 8 LEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----SCPERI 62
Query: 85 IMISGTIDEILRAVDLVIDKLLTELHAED-QADDVGTK-TKLRLIVPNSSCGSIIGKAGA 142
I+G+ + AV ++ KL +L A +V LRL++P S CGS+IGKAG
Sbjct: 63 TTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 143 TIKSFMDDSQAVIKISR--LDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQ 200
IK + + A ++++ L +S +R VT++G D + + I + E +
Sbjct: 123 KIKEIRETTGAQVQVAGDLLPNS----TERAVTVSGVPDAIILCVRQICAVILESP--PK 176
Query: 201 TMTVPY----TYAGVFFSGFHGMP----YGXXXXXXXXXXHNTAAHYGPNMGGRKFQNNK 252
T+PY + V S G YG + H P
Sbjct: 177 GATIPYHPSLSLGTVLLSTNQGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSMVPAGL 236
Query: 253 DD--RTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTIS 310
D +T+S V ++ IG V+GR G I EI Q+SGA IK+ ++ + G ER VTI+
Sbjct: 237 DPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAE---GAGERHVTIT 293
Query: 311 GPQRSIRTAESMI 323
G SI A+ +I
Sbjct: 294 GSPVSIALAQYLI 306
>UNIPROTKB|P57723 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0003677 GO:GO:0003723
GO:GO:0030529 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:57060 OMA:MSSSDAG
OrthoDB:EOG48D0VR EMBL:AF176330 EMBL:AK023993 EMBL:BC003008
EMBL:BC004153 EMBL:BC017098 IPI:IPI00027973 IPI:IPI00386254
RefSeq:NP_001167571.1 RefSeq:NP_065151.2 RefSeq:NP_127501.1
RefSeq:NP_127503.1 UniGene:Hs.20930 ProteinModelPortal:P57723
SMR:P57723 IntAct:P57723 MINT:MINT-2873350 STRING:P57723
PhosphoSite:P57723 DMDM:12230429 PRIDE:P57723
Ensembl:ENST00000322099 Ensembl:ENST00000355852
Ensembl:ENST00000428823 Ensembl:ENST00000461554
Ensembl:ENST00000484633 GeneID:57060 KEGG:hsa:57060 UCSC:uc003dce.2
UCSC:uc003dck.2 GeneCards:GC03M051991 HGNC:HGNC:8652 MIM:608503
neXtProt:NX_P57723 PharmGKB:PA32991 GenomeRNAi:57060 NextBio:62848
ArrayExpress:P57723 Bgee:P57723 CleanEx:HS_PCBP4
Genevestigator:P57723 GermOnline:ENSG00000090097 Uniprot:P57723
Length = 403
Score = 263 (97.6 bits), Expect = 1.4e-22, P = 1.4e-22
Identities = 92/312 (29%), Positives = 143/312 (45%)
Query: 26 LSSDPTEKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRI 84
L +P T +R L+ G++IGK G T+ + QS ARI +S +RI
Sbjct: 8 LEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----SCPERI 62
Query: 85 IMISGTIDEILRAVDLVIDKLLTELHAED-QADDVGTK-TKLRLIVPNSSCGSIIGKAGA 142
I+G+ + AV ++ KL +L A +V LRL++P S CGS+IGKAG
Sbjct: 63 TTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 143 TIKSFMDDSQAVIKISR--LDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQ 200
IK + + A ++++ L +S +R VT++G D + + I + E +
Sbjct: 123 KIKEIRETTGAQVQVAGDLLPNS----TERAVTVSGVPDAIILCVRQICAVILESP--PK 176
Query: 201 TMTVPY----TYAGVFFSGFHGMP----YGXXXXXXXXXXHNTAAHYGPNMGGRKFQN-N 251
T+PY + V S G YG ++H P +
Sbjct: 177 GATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVVPGLD 236
Query: 252 KDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISG 311
+T+S V ++ IG V+GR G I EI Q+SGA IK+ ++ + G ER VTI+G
Sbjct: 237 PGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAE---GAGERHVTITG 293
Query: 312 PQRSIRTAESMI 323
SI A+ +I
Sbjct: 294 SPVSIALAQYLI 305
>MGI|MGI:1890471 [details] [associations]
symbol:Pcbp4 "poly(rC) binding protein 4" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006977 "DNA damage response, signal transduction by p53 class
mediator resulting in cell cycle arrest" evidence=ISO] [GO:0007050
"cell cycle arrest" evidence=ISO] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890471 GO:GO:0005737 GO:GO:0003677
GO:GO:0003723 GO:GO:0030529 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K13162
CTD:57060 OrthoDB:EOG48D0VR EMBL:AF176328 EMBL:BC010694
IPI:IPI00118718 RefSeq:NP_067542.3 UniGene:Mm.286394
ProteinModelPortal:P57724 SMR:P57724 STRING:P57724
PhosphoSite:P57724 PaxDb:P57724 PRIDE:P57724
Ensembl:ENSMUST00000024260 GeneID:59092 KEGG:mmu:59092
InParanoid:P57724 NextBio:314742 Bgee:P57724 CleanEx:MM_PCBP4
Genevestigator:P57724 GermOnline:ENSMUSG00000023495 Uniprot:P57724
Length = 403
Score = 263 (97.6 bits), Expect = 1.4e-22, P = 1.4e-22
Identities = 89/300 (29%), Positives = 137/300 (45%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
+R L+ G++IGK G T+ + QS ARI +S +RI I+G+ +
Sbjct: 20 LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----SCPERITTITGSTAAVFH 74
Query: 97 AVDLVIDKLLTELHAED-QADDVGTK-TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
AV ++ KL +L A V LRL++P S CGS+IGKAG IK + + A
Sbjct: 75 AVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQ 134
Query: 155 IKISR--LDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPY----TY 208
++++ L +S +R VT++G D + + I + E + T+PY +
Sbjct: 135 VQVAGDLLPNS----TERAVTVSGVPDAIILCVRQICAVILESP--PKGATIPYHPSLSL 188
Query: 209 AGVFFSGFHGMP----YGXXXXXXXXXXHNTAAHYGPNMGGRKFQN-NKDDRTNSLTIGV 263
V S G YG + H P + +T+S V
Sbjct: 189 GTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSVVPGMDPSTQTSSQEFLV 248
Query: 264 ADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMI 323
++ IG V+GR G I EI Q+SGA IK+ ++ + G ER VTI+G SI A+ +I
Sbjct: 249 PNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAE---GAGERHVTITGSPVSIALAQYLI 305
>UNIPROTKB|H3BRU6 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 Ensembl:ENST00000562264 Uniprot:H3BRU6
Length = 301
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 81/294 (27%), Positives = 148/294 (50%)
Query: 47 GAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLL 106
G++IGK G ++ + +SGARI +S + +RII ++G + I +A ++IDKL
Sbjct: 7 GSIIGKKGESVKKMREESGARINISEGN-----CPERIITLAGPTNAIFKAFAMIIDKLE 61
Query: 107 TELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKIS--RLDH 162
++ + ++ LRL+VP S CGS+IGK G IK + + A ++++ L +
Sbjct: 62 EDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 121
Query: 163 SYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYS--QTMTVPY----TYAGVFFSG- 215
S +R +T+ G + ++ I + + E S + +T+PY + + V F+G
Sbjct: 122 S----TERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSSPVIFAGG 177
Query: 216 ----FH--GMPYGXXXXXXXXXXHNTAAHYGPNMGGRKFQNNKDDRTNSLTIGVADEHIG 269
H M + P + G + + +T S + + ++ IG
Sbjct: 178 QLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGY-WGLDASAQTTSHELTIPNDLIG 236
Query: 270 FVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMI 323
++GR G I EI Q+SGA+IK+++ + G+++R+VTI+G SI A+ +I
Sbjct: 237 CIIGRQGAKINEIRQMSGAQIKIANPVE---GSTDRQVTITGSAASISLAQYLI 287
>UNIPROTKB|P57721 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0016071 "mRNA metabolic process" evidence=NAS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0016071
GO:GO:0003677 GO:GO:0003723 GO:GO:0030529 eggNOG:NOG315872
HOVERGEN:HBG053520 KO:K13162 EMBL:AF176329 EMBL:AK094301
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 EMBL:BC012061 IPI:IPI00027970 IPI:IPI00101278
IPI:IPI00167750 IPI:IPI00410586 IPI:IPI00410587
RefSeq:NP_001123613.1 RefSeq:NP_065389.2 UniGene:Hs.474049
ProteinModelPortal:P57721 SMR:P57721 IntAct:P57721
MINT:MINT-2862183 STRING:P57721 PhosphoSite:P57721 DMDM:296439262
PaxDb:P57721 PRIDE:P57721 Ensembl:ENST00000400308
Ensembl:ENST00000400309 Ensembl:ENST00000400310
Ensembl:ENST00000400314 Ensembl:ENST00000449640 GeneID:54039
KEGG:hsa:54039 UCSC:uc002zhp.2 UCSC:uc002zhq.2 UCSC:uc002zhs.2
CTD:54039 GeneCards:GC21P047063 HGNC:HGNC:8651 HPA:HPA030247
MIM:608502 neXtProt:NX_P57721 PharmGKB:PA32990 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 GenomeRNAi:54039 NextBio:56330
ArrayExpress:P57721 Bgee:P57721 CleanEx:HS_PCBP3
Genevestigator:P57721 GermOnline:ENSG00000183570 Uniprot:P57721
Length = 371
Score = 199 (75.1 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 60/204 (29%), Positives = 102/204 (50%)
Query: 7 SYVPSPDVHGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGA 66
S+ P P G+R + V + T IR L+ G++IGK G T+ + +SGA
Sbjct: 22 SHHPQPQF-GRRMESKVSEGGLNVT---LTIRLLMHGKEVGSIIGKKGETVKKMREESGA 77
Query: 67 RIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTK--TKL 124
RI +S + +RI+ I+G D I +A ++ K ++ +K L
Sbjct: 78 RINISEGN-----CPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTL 132
Query: 125 RLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKIS--RLDHSYYGLNDRLVTLTGTLDEQM 182
RL+VP S CGS+IGK G+ IK + + A ++++ L +S +R VT++GT D +
Sbjct: 133 RLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNS----TERAVTISGTPDAII 188
Query: 183 RALELILLKLSEDTLYSQTMTVPY 206
+ ++ I + + E + T+PY
Sbjct: 189 QCVKQICVVMLESP--PKGATIPY 210
Score = 117 (46.2 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 28/68 (41%), Positives = 46/68 (67%)
Query: 256 TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRS 315
T+ LTI ++ IG ++GR G I EI Q+SGA+IK+++ + G+SER++TI+G +
Sbjct: 295 THELTI--PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE---GSSERQITITGTPAN 349
Query: 316 IRTAESMI 323
I A+ +I
Sbjct: 350 ISLAQYLI 357
>UNIPROTKB|E2RCH9 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03016660 Ensembl:ENSCAFT00000010991 Uniprot:E2RCH9
Length = 370
Score = 196 (74.1 bits), Expect = 5.8e-22, Sum P(2) = 5.8e-22
Identities = 58/200 (29%), Positives = 101/200 (50%)
Query: 12 PDVH-GKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQL 70
P +H G++ + V + T IR L+ G++IGK G T+ + +SGARI +
Sbjct: 25 PQLHFGRKMESKVSEGGLNVT---LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI 81
Query: 71 SRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTK--TKLRLIV 128
S + +RI+ I+G D I +A ++ K ++ +K LRL+V
Sbjct: 82 SEGN-----CPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVV 136
Query: 129 PNSSCGSIIGKAGATIKSFMDDSQAVIKIS--RLDHSYYGLNDRLVTLTGTLDEQMRALE 186
P S CGS+IGK G+ IK + + A ++++ L +S +R VT++GT D ++ ++
Sbjct: 137 PASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNS----TERAVTISGTPDAIIQCVK 192
Query: 187 LILLKLSEDTLYSQTMTVPY 206
I + + E + T+PY
Sbjct: 193 QICVVMLESP--PKGATIPY 210
Score = 117 (46.2 bits), Expect = 5.8e-22, Sum P(2) = 5.8e-22
Identities = 28/68 (41%), Positives = 46/68 (67%)
Query: 256 TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRS 315
T+ LTI ++ IG ++GR G I EI Q+SGA+IK+++ + G+SER++TI+G +
Sbjct: 294 THELTI--PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE---GSSERQITITGTPAN 348
Query: 316 IRTAESMI 323
I A+ +I
Sbjct: 349 ISLAQYLI 356
>UNIPROTKB|E2QUE1 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:FWAPSVL EMBL:AAEX03016660 Ensembl:ENSCAFT00000018912
Uniprot:E2QUE1
Length = 371
Score = 196 (74.1 bits), Expect = 6.0e-22, Sum P(2) = 6.0e-22
Identities = 58/200 (29%), Positives = 101/200 (50%)
Query: 12 PDVH-GKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQL 70
P +H G++ + V + T IR L+ G++IGK G T+ + +SGARI +
Sbjct: 25 PQLHFGRKMESKVSEGGLNVT---LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI 81
Query: 71 SRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTK--TKLRLIV 128
S + +RI+ I+G D I +A ++ K ++ +K LRL+V
Sbjct: 82 SEGN-----CPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVV 136
Query: 129 PNSSCGSIIGKAGATIKSFMDDSQAVIKIS--RLDHSYYGLNDRLVTLTGTLDEQMRALE 186
P S CGS+IGK G+ IK + + A ++++ L +S +R VT++GT D ++ ++
Sbjct: 137 PASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNS----TERAVTISGTPDAIIQCVK 192
Query: 187 LILLKLSEDTLYSQTMTVPY 206
I + + E + T+PY
Sbjct: 193 QICVVMLESP--PKGATIPY 210
Score = 117 (46.2 bits), Expect = 6.0e-22, Sum P(2) = 6.0e-22
Identities = 28/68 (41%), Positives = 46/68 (67%)
Query: 256 TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRS 315
T+ LTI ++ IG ++GR G I EI Q+SGA+IK+++ + G+SER++TI+G +
Sbjct: 295 THELTI--PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE---GSSERQITITGTPAN 349
Query: 316 IRTAESMI 323
I A+ +I
Sbjct: 350 ISLAQYLI 357
>UNIPROTKB|F1SFQ4 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 CTD:5094 KO:K13162
OMA:CVVMLEL EMBL:CU928648 RefSeq:NP_001231441.1 UniGene:Ssc.4977
Ensembl:ENSSSCT00000000294 GeneID:397665 KEGG:ssc:397665
ArrayExpress:F1SFQ4 Uniprot:F1SFQ4
Length = 353
Score = 194 (73.4 bits), Expect = 6.2e-22, Sum P(2) = 6.2e-22
Identities = 51/176 (28%), Positives = 92/176 (52%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G ++ + +SGARI +S + +RII ++G + I +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN-----CPERIITLAGPTNAIFK 70
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
A ++IDKL ++ + ++ LRL+VP S CGS+IGK G IK + + A
Sbjct: 71 AFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQ 130
Query: 155 IKIS--RLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYS--QTMTVPY 206
++++ L +S +R +T+ G + ++ I + + E S + +T+PY
Sbjct: 131 VQVAGDMLPNS----TERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPY 182
Score = 118 (46.6 bits), Expect = 6.2e-22, Sum P(2) = 6.2e-22
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 237 AHYGPNMGGRKFQNNKDD--RTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSD 294
+H+ G F D +T S + + ++ IG ++GR G I EI Q+SGA+IK+++
Sbjct: 254 SHFPMTHGNTGFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN 313
Query: 295 RGDFFSGTSERKVTISGPQRSIRTAESMI 323
+ G+++R+VTI+G SI A+ +I
Sbjct: 314 PVE---GSTDRQVTITGSAASISLAQYLI 339
Score = 107 (42.7 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 34/125 (27%), Positives = 56/125 (44%)
Query: 27 SSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIM 86
S+ + P +R +V G++IGKGG I + + +GA++Q++ + P +T+R I
Sbjct: 90 STAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG--DMLPNSTERAIT 147
Query: 87 ISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKS 146
I+G I+ V + +L L Q+ G R P S +I G S
Sbjct: 148 IAGIPQSIIECVKQICVVMLETL---SQSPPKGVTIPYR---PKPSSSPVIFAGGQDRYS 201
Query: 147 FMDDS 151
DS
Sbjct: 202 TGSDS 206
>UNIPROTKB|Q17QV0 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005829 "cytosol" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F EMBL:DAAA02003497 EMBL:DAAA02003498
EMBL:DAAA02003499 EMBL:DAAA02003500 EMBL:DAAA02003501 EMBL:BC118166
IPI:IPI00733966 RefSeq:NP_001069752.1 UniGene:Bt.27304 SMR:Q17QV0
Ensembl:ENSBTAT00000043482 GeneID:613725 KEGG:bta:613725
InParanoid:Q17QV0 NextBio:20898729 Uniprot:Q17QV0
Length = 361
Score = 195 (73.7 bits), Expect = 6.6e-22, Sum P(2) = 6.6e-22
Identities = 53/174 (30%), Positives = 91/174 (52%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G T+ + +SGARI +S + +RI+ I+G D I +
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN-----CPERIVTITGPTDAIFK 70
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
A ++ K ++ +K LRL+VP S CGS+IGK G+ IK + + A
Sbjct: 71 AFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQ 130
Query: 155 IKIS--RLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPY 206
++++ L +S +R VT++GT D ++ ++ I + + E + T+PY
Sbjct: 131 VQVAGDMLPNS----TERAVTISGTPDAIIQCVKQICVVMLESP--PKGATIPY 178
Score = 133 (51.9 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 29/78 (37%), Positives = 49/78 (62%)
Query: 23 VKSLSSDP-TEKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGT 80
+ S+S+ P T KP +R +V G++IGKGGS I + + +GA++Q++ + P +
Sbjct: 84 INSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG--DMLPNS 141
Query: 81 TDRIIMISGTIDEILRAV 98
T+R + ISGT D I++ V
Sbjct: 142 TERAVTISGTPDAIIQCV 159
Score = 117 (46.2 bits), Expect = 6.6e-22, Sum P(2) = 6.6e-22
Identities = 28/68 (41%), Positives = 46/68 (67%)
Query: 256 TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRS 315
T+ LTI ++ IG ++GR G I EI Q+SGA+IK+++ + G+SER++TI+G +
Sbjct: 285 THELTI--PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE---GSSERQITITGTPAN 339
Query: 316 IRTAESMI 323
I A+ +I
Sbjct: 340 ISLAQYLI 347
Score = 82 (33.9 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 24/70 (34%), Positives = 34/70 (48%)
Query: 126 LIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRAL 185
L +PN G IIG+ G I S A IKI+ G ++R +T+TGT A
Sbjct: 288 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE---GSSERQITITGTPANISLAQ 344
Query: 186 ELILLKLSED 195
LI +L+ +
Sbjct: 345 YLINARLTSE 354
>UNIPROTKB|E9PFP8 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 HGNC:HGNC:8651 ChiTaRS:PCBP3 IPI:IPI00550365
ProteinModelPortal:E9PFP8 SMR:E9PFP8 PRIDE:E9PFP8
Ensembl:ENST00000400304 UCSC:uc002zht.2 ArrayExpress:E9PFP8
Bgee:E9PFP8 Uniprot:E9PFP8
Length = 361
Score = 195 (73.7 bits), Expect = 6.6e-22, Sum P(2) = 6.6e-22
Identities = 53/174 (30%), Positives = 91/174 (52%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G T+ + +SGARI +S + +RI+ I+G D I +
Sbjct: 16 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN-----CPERIVTITGPTDAIFK 70
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
A ++ K ++ +K LRL+VP S CGS+IGK G+ IK + + A
Sbjct: 71 AFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQ 130
Query: 155 IKIS--RLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPY 206
++++ L +S +R VT++GT D ++ ++ I + + E + T+PY
Sbjct: 131 VQVAGDMLPNS----TERAVTISGTPDAIIQCVKQICVVMLESP--PKGATIPY 178
Score = 133 (51.9 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 29/78 (37%), Positives = 49/78 (62%)
Query: 23 VKSLSSDP-TEKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGT 80
+ S+S+ P T KP +R +V G++IGKGGS I + + +GA++Q++ + P +
Sbjct: 84 INSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG--DMLPNS 141
Query: 81 TDRIIMISGTIDEILRAV 98
T+R + ISGT D I++ V
Sbjct: 142 TERAVTISGTPDAIIQCV 159
Score = 117 (46.2 bits), Expect = 6.6e-22, Sum P(2) = 6.6e-22
Identities = 28/68 (41%), Positives = 46/68 (67%)
Query: 256 TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRS 315
T+ LTI ++ IG ++GR G I EI Q+SGA+IK+++ + G+SER++TI+G +
Sbjct: 285 THELTI--PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE---GSSERQITITGTPAN 339
Query: 316 IRTAESMI 323
I A+ +I
Sbjct: 340 ISLAQYLI 347
Score = 82 (33.9 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 24/70 (34%), Positives = 34/70 (48%)
Query: 126 LIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRAL 185
L +PN G IIG+ G I S A IKI+ G ++R +T+TGT A
Sbjct: 288 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE---GSSERQITITGTPANISLAQ 344
Query: 186 ELILLKLSED 195
LI +L+ +
Sbjct: 345 YLINARLTSE 354
>UNIPROTKB|Q3SYT9 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2" species:9913 "Bos
taurus" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:DAAA02012861 EMBL:DAAA02012860
EMBL:BC103397 IPI:IPI00696193 RefSeq:NP_001029883.1
UniGene:Bt.49118 SMR:Q3SYT9 STRING:Q3SYT9
Ensembl:ENSBTAT00000027662 GeneID:540653 KEGG:bta:540653
InParanoid:Q3SYT9 NextBio:20878753 Uniprot:Q3SYT9
Length = 349
Score = 193 (73.0 bits), Expect = 7.6e-22, Sum P(2) = 7.6e-22
Identities = 50/174 (28%), Positives = 91/174 (52%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G ++ + +SGARI +S + +RII ++G + I +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN-----CPERIITLAGPTNAIFK 70
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
A ++IDKL ++ + ++ LRL+VP S CGS+IGK G IK + + A
Sbjct: 71 AFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQ 130
Query: 155 IKIS--RLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPY 206
++++ L +S +R +T+ G + ++ I + + E + +T+PY
Sbjct: 131 VQVAGDMLPNS----TERAITIAGIPQSIIECVKQICVVMLESP--PKGVTIPY 178
Score = 118 (46.6 bits), Expect = 7.6e-22, Sum P(2) = 7.6e-22
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 237 AHYGPNMGGRKFQNNKDD--RTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSD 294
+H+ G F D +T S + + ++ IG ++GR G I EI Q+SGA+IK+++
Sbjct: 250 SHFPMTHGNTGFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN 309
Query: 295 RGDFFSGTSERKVTISGPQRSIRTAESMI 323
+ G+++R+VTI+G SI A+ +I
Sbjct: 310 PVE---GSTDRQVTITGSAASISLAQYLI 335
Score = 103 (41.3 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 27 SSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIM 86
S+ + P +R +V G++IGKGG I + + +GA++Q++ + P +T+R I
Sbjct: 90 STAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG--DMLPNSTERAIT 147
Query: 87 ISGTIDEILRAV 98
I+G I+ V
Sbjct: 148 IAGIPQSIIECV 159
Score = 99 (39.9 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 29/75 (38%), Positives = 38/75 (50%)
Query: 122 TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQ 181
T L +PN G IIG+ GA I S A IKI+ + G DR VT+TG+
Sbjct: 272 TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIA---NPVEGSTDRQVTITGSAASI 328
Query: 182 MRALELILLKLSEDT 196
A LI ++LS +T
Sbjct: 329 SLAQYLINVRLSSET 343
>MGI|MGI:1890470 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005829 "cytosol"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890470 GO:GO:0005829 GO:GO:0005739
GO:GO:0005634 GO:GO:0003677 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 EMBL:AF176327 EMBL:AK034811
EMBL:AK079564 IPI:IPI00411074 IPI:IPI00411075 RefSeq:NP_067543.2
UniGene:Mm.272803 ProteinModelPortal:P57722 SMR:P57722
STRING:P57722 PhosphoSite:P57722 PaxDb:P57722 PRIDE:P57722
Ensembl:ENSMUST00000001148 Ensembl:ENSMUST00000105411
Ensembl:ENSMUST00000168465 GeneID:59093 KEGG:mmu:59093
UCSC:uc007fuz.2 UCSC:uc007fva.2 InParanoid:P57722 NextBio:314746
Bgee:P57722 CleanEx:MM_PCBP3 Genevestigator:P57722
GermOnline:ENSMUSG00000001120 Uniprot:P57722
Length = 371
Score = 195 (73.7 bits), Expect = 8.0e-22, Sum P(2) = 8.0e-22
Identities = 53/174 (30%), Positives = 91/174 (52%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G T+ + +SGARI +S + +RI+ I+G D I +
Sbjct: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN-----CPERIVTITGPTDAIFK 102
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
A ++ K ++ +K LRL+VP S CGS+IGK G+ IK + + A
Sbjct: 103 AFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQ 162
Query: 155 IKIS--RLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPY 206
++++ L +S +R VT++GT D ++ ++ I + + E + T+PY
Sbjct: 163 VQVAGDMLPNS----TERAVTISGTPDAIIQCVKQICVVMLESP--PKGATIPY 210
Score = 133 (51.9 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
Identities = 29/78 (37%), Positives = 49/78 (62%)
Query: 23 VKSLSSDP-TEKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGT 80
+ S+S+ P T KP +R +V G++IGKGGS I + + +GA++Q++ + P +
Sbjct: 116 INSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG--DMLPNS 173
Query: 81 TDRIIMISGTIDEILRAV 98
T+R + ISGT D I++ V
Sbjct: 174 TERAVTISGTPDAIIQCV 191
Score = 117 (46.2 bits), Expect = 8.0e-22, Sum P(2) = 8.0e-22
Identities = 28/68 (41%), Positives = 46/68 (67%)
Query: 256 TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRS 315
T+ LTI ++ IG ++GR G I EI Q+SGA+IK+++ + G+SER++TI+G +
Sbjct: 295 THELTI--PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE---GSSERQITITGTPAN 349
Query: 316 IRTAESMI 323
I A+ +I
Sbjct: 350 ISLAQYLI 357
Score = 82 (33.9 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 24/70 (34%), Positives = 34/70 (48%)
Query: 126 LIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRAL 185
L +PN G IIG+ G I S A IKI+ G ++R +T+TGT A
Sbjct: 298 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE---GSSERQITITGTPANISLAQ 354
Query: 186 ELILLKLSED 195
LI +L+ +
Sbjct: 355 YLINARLTSE 364
>UNIPROTKB|D4A1P3 [details] [associations]
symbol:Pcbp3 "Protein Pcbp3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1307430 GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:CH473988 OrthoDB:EOG4XH00F IPI:IPI00558998 UniGene:Rn.107537
Ensembl:ENSRNOT00000042120 Uniprot:D4A1P3
Length = 371
Score = 195 (73.7 bits), Expect = 8.0e-22, Sum P(2) = 8.0e-22
Identities = 53/174 (30%), Positives = 91/174 (52%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G T+ + +SGARI +S + +RI+ I+G D I +
Sbjct: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN-----CPERIVTITGPTDAIFK 102
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
A ++ K ++ +K LRL+VP S CGS+IGK G+ IK + + A
Sbjct: 103 AFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQ 162
Query: 155 IKIS--RLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPY 206
++++ L +S +R VT++GT D ++ ++ I + + E + T+PY
Sbjct: 163 VQVAGDMLPNS----TERAVTISGTPDAIIQCVKQICVVMLESP--PKGATIPY 210
Score = 133 (51.9 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
Identities = 29/78 (37%), Positives = 49/78 (62%)
Query: 23 VKSLSSDP-TEKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGT 80
+ S+S+ P T KP +R +V G++IGKGGS I + + +GA++Q++ + P +
Sbjct: 116 INSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG--DMLPNS 173
Query: 81 TDRIIMISGTIDEILRAV 98
T+R + ISGT D I++ V
Sbjct: 174 TERAVTISGTPDAIIQCV 191
Score = 117 (46.2 bits), Expect = 8.0e-22, Sum P(2) = 8.0e-22
Identities = 28/68 (41%), Positives = 46/68 (67%)
Query: 256 TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRS 315
T+ LTI ++ IG ++GR G I EI Q+SGA+IK+++ + G+SER++TI+G +
Sbjct: 295 THELTI--PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE---GSSERQITITGTPAN 349
Query: 316 IRTAESMI 323
I A+ +I
Sbjct: 350 ISLAQYLI 357
Score = 82 (33.9 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 24/70 (34%), Positives = 34/70 (48%)
Query: 126 LIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRAL 185
L +PN G IIG+ G I S A IKI+ G ++R +T+TGT A
Sbjct: 298 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE---GSSERQITITGTPANISLAQ 354
Query: 186 ELILLKLSED 195
LI +L+ +
Sbjct: 355 YLINARLTSE 364
>UNIPROTKB|J3QT27 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AJ011931 EMBL:AJ239328
EMBL:AL133492 EMBL:AL133493 EMBL:AL592528 HGNC:HGNC:8651
ChiTaRS:PCBP3 ProteinModelPortal:J3QT27 Ensembl:ENST00000400305
Uniprot:J3QT27
Length = 322
Score = 191 (72.3 bits), Expect = 9.0e-22, Sum P(2) = 9.0e-22
Identities = 57/201 (28%), Positives = 98/201 (48%)
Query: 10 PSPDVHGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQ 69
P P G+R + V + T IR L+ G++IGK G T+ + +SGARI
Sbjct: 1 PQPQF-GRRMESKVSEGGLNVT---LTIRLLMHGKEVGSIIGKKGETVKKMREESGARIN 56
Query: 70 LSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTK--TKLRLI 127
+S + +RI+ I+G D I +A ++ K ++ +K LRL+
Sbjct: 57 ISEGN-----CPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLV 111
Query: 128 VPNSSCGSIIGKAGATIKSFMDDSQAVIKIS--RLDHSYYGLNDRLVTLTGTLDEQMRAL 185
VP S CGS+IGK G+ IK + + A ++++ L +S +R VT++GT D ++ +
Sbjct: 112 VPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNS----TERAVTISGTPDAIIQCV 167
Query: 186 ELILLKLSEDTLYSQTMTVPY 206
+ I + + E +P+
Sbjct: 168 KQICVVMLEAYTIQGQYAIPH 188
Score = 117 (46.2 bits), Expect = 9.0e-22, Sum P(2) = 9.0e-22
Identities = 28/68 (41%), Positives = 46/68 (67%)
Query: 256 TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRS 315
T+ LTI ++ IG ++GR G I EI Q+SGA+IK+++ + G+SER++TI+G +
Sbjct: 246 THELTI--PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE---GSSERQITITGTPAN 300
Query: 316 IRTAESMI 323
I A+ +I
Sbjct: 301 ISLAQYLI 308
>UNIPROTKB|E2RCF9 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:AAEX03014980 RefSeq:XP_857995.1
ProteinModelPortal:E2RCF9 Ensembl:ENSCAFT00000010996 GeneID:477596
KEGG:cfa:477596 Uniprot:E2RCF9
Length = 331
Score = 194 (73.4 bits), Expect = 9.3e-22, Sum P(2) = 9.3e-22
Identities = 55/193 (28%), Positives = 99/193 (51%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G ++ + +SGARI +S + +RII ++G + I +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN-----CPERIITLAGPTNAIFK 70
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
A ++IDKL ++ + ++ LRL+VP S CGS+IGK G IK + + A
Sbjct: 71 AFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQ 130
Query: 155 IKIS--RLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPY----TY 208
++++ L +S +R +T+ G + ++ I + + E + +T+PY +
Sbjct: 131 VQVAGDMLPNS----TERAITIAGIPQSIIECVKQICVVMLESP--PKGVTIPYRPKPSS 184
Query: 209 AGVFFSGFHGMPY 221
+ V F+G G Y
Sbjct: 185 SPVIFAG--GQAY 195
Score = 114 (45.2 bits), Expect = 9.3e-22, Sum P(2) = 9.3e-22
Identities = 26/69 (37%), Positives = 46/69 (66%)
Query: 255 RTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQR 314
+T S + + ++ IG ++GR G I EI Q+SGA+IK+++ + G+++R+VTI+G
Sbjct: 252 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVE---GSTDRQVTITGSAA 308
Query: 315 SIRTAESMI 323
SI A+ +I
Sbjct: 309 SISLAQYLI 317
Score = 103 (41.3 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 27 SSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIM 86
S+ + P +R +V G++IGKGG I + + +GA++Q++ + P +T+R I
Sbjct: 90 STAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG--DMLPNSTERAIT 147
Query: 87 ISGTIDEILRAV 98
I+G I+ V
Sbjct: 148 IAGIPQSIIECV 159
Score = 99 (39.9 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 29/75 (38%), Positives = 38/75 (50%)
Query: 122 TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQ 181
T L +PN G IIG+ GA I S A IKI+ + G DR VT+TG+
Sbjct: 254 TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIA---NPVEGSTDRQVTITGSAASI 310
Query: 182 MRALELILLKLSEDT 196
A LI ++LS +T
Sbjct: 311 SLAQYLINVRLSSET 325
>UNIPROTKB|G3N2N4 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048 KO:K14944
EMBL:DAAA02052552 EMBL:DAAA02052553 RefSeq:XP_001257255.3
Ensembl:ENSBTAT00000065126 GeneID:790874 KEGG:bta:790874
NextBio:20930383 Uniprot:G3N2N4
Length = 385
Score = 160 (61.4 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 37/101 (36%), Positives = 61/101 (60%)
Query: 123 KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQM 182
++++IVPNS+ G IIGK GAT+K+ M+ S A +++S+ L +R+VT++G ++
Sbjct: 51 QVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI-NLQERVVTVSGEPEQNR 109
Query: 183 RALELILLKLSEDTLYSQTMTVPYT-YAG-VFFSGFHGMPY 221
+A+ELI+ K+ ED + + Y G V S G PY
Sbjct: 110 KAVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPY 150
Score = 159 (61.0 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 27/81 (33%), Positives = 53/81 (65%)
Query: 249 QNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVT 308
+ + D + + I V + +G ++G+GG+ ++E +++GARI++S +G+F GT RKVT
Sbjct: 292 EKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVT 351
Query: 309 ISGPQRSIRTAESMIMQKVAY 329
I+G + + A+ +I Q++ Y
Sbjct: 352 ITGTPAATQAAQYLITQRITY 372
Score = 148 (57.2 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 32/89 (35%), Positives = 52/89 (58%)
Query: 19 STAPVKSLSSDP--TEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEF 76
S KS SDP T + ++ +V N AG +IGKGG+T+ QSGA +QLS+ +
Sbjct: 32 SPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDG 91
Query: 77 FPGTTDRIIMISGTIDEILRAVDLVIDKL 105
+R++ +SG ++ +AV+L+I K+
Sbjct: 92 I-NLQERVVTVSGEPEQNRKAVELIIQKI 119
Score = 139 (54.0 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 33/94 (35%), Positives = 54/94 (57%)
Query: 19 STAPVKSLSSDPTEKPT-----YIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRS 73
+ +P+ + + TEK T + V L GA++GKGG T+ ++Q +GARIQ+S+
Sbjct: 279 AASPLAASAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKK 338
Query: 74 HEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLT 107
EF PGT +R + I+GT +A +I + +T
Sbjct: 339 GEFVPGTRNRKVTITGT-PAATQAAQYLITQRIT 371
Score = 100 (40.3 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 109 LHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLN 168
L E D G+K + + VP + G+I+GK G T+ + + + A I+IS+ G
Sbjct: 289 LGTEKSTD--GSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTR 346
Query: 169 DRLVTLTGTLDEQMRALELILLKLS 193
+R VT+TGT A LI +++
Sbjct: 347 NRKVTITGTPAATQAAQYLITQRIT 371
>ZFIN|ZDB-GENE-050522-157 [details] [associations]
symbol:pcbp3 "poly(rC) binding protein 3"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-050522-157 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:BX247868 HOVERGEN:HBG053520 IPI:IPI00868273 UniGene:Dr.159961
SMR:A8WHQ1 Ensembl:ENSDART00000148317 Uniprot:A8WHQ1
Length = 350
Score = 192 (72.6 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 56/187 (29%), Positives = 95/187 (50%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G T+ + +SGARI +S + +RI+ I+G D I +
Sbjct: 18 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN-----CPERIVTITGPTDAIFK 72
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
A ++ K ++ +K LRL+VP S CGS+IGK G+ IK + + A
Sbjct: 73 AFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQ 132
Query: 155 IKIS--RLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPY----TY 208
++++ L +S +R VT++GT + ++ ++ I + + E + T+PY
Sbjct: 133 VQVAGDMLPNS----TERAVTISGTPEAIIQCVKQICVVMLESP--PKGATIPYRPKPAS 186
Query: 209 AGVFFSG 215
V FSG
Sbjct: 187 TPVIFSG 193
Score = 129 (50.5 bits), Expect = 9.4e-14, Sum P(2) = 9.4e-14
Identities = 28/78 (35%), Positives = 49/78 (62%)
Query: 23 VKSLSSDP-TEKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGT 80
+ S+S+ P T KP +R +V G++IGKGGS I + + +GA++Q++ + P +
Sbjct: 86 INSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAG--DMLPNS 143
Query: 81 TDRIIMISGTIDEILRAV 98
T+R + ISGT + I++ V
Sbjct: 144 TERAVTISGTPEAIIQCV 161
Score = 117 (46.2 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 28/68 (41%), Positives = 45/68 (66%)
Query: 256 TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRS 315
T+ LTI ++ IG ++GR G I EI Q+SGA+IK+++ G+SER++TI+G +
Sbjct: 268 THELTI--PNDLIGCIIGRQGTKINEIRQMSGAQIKIANA---MEGSSERQITITGTPAN 322
Query: 316 IRTAESMI 323
I A+ +I
Sbjct: 323 ISLAQYLI 330
>UNIPROTKB|B7Z770 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003729 GO:GO:0000398 IPI:IPI00019244
UniGene:Hs.31588 HGNC:HGNC:7886 HOVERGEN:HBG082048 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 EMBL:AK301526 ProteinModelPortal:B7Z770
SMR:B7Z770 STRING:B7Z770 PRIDE:B7Z770 Ensembl:ENST00000267422
ArrayExpress:B7Z770 Bgee:B7Z770 Uniprot:B7Z770
Length = 385
Score = 159 (61.0 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 27/81 (33%), Positives = 53/81 (65%)
Query: 249 QNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVT 308
+ + D + + I V + +G ++G+GG+ ++E +++GARI++S +G+F GT RKVT
Sbjct: 292 EKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVT 351
Query: 309 ISGPQRSIRTAESMIMQKVAY 329
I+G + + A+ +I Q++ Y
Sbjct: 352 ITGTPAATQAAQYLITQRITY 372
Score = 159 (61.0 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 37/101 (36%), Positives = 61/101 (60%)
Query: 123 KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQM 182
++++IVPNS+ G IIGK GAT+K+ M+ S A +++S+ L +R+VT++G ++
Sbjct: 51 QVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGI-NLQERVVTVSGEPEQNR 109
Query: 183 RALELILLKLSEDTLYSQTMTVPYT-YAG-VFFSGFHGMPY 221
+A+ELI+ K+ ED + + Y G V S G PY
Sbjct: 110 KAVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPY 150
Score = 147 (56.8 bits), Expect = 2.7e-20, Sum P(2) = 2.7e-20
Identities = 32/89 (35%), Positives = 52/89 (58%)
Query: 19 STAPVKSLSSDP--TEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEF 76
S KS SDP T + ++ +V N AG +IGKGG+T+ QSGA +QLS+ +
Sbjct: 32 SPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDG 91
Query: 77 FPGTTDRIIMISGTIDEILRAVDLVIDKL 105
+R++ +SG ++ +AV+L+I K+
Sbjct: 92 I-NLQERVVTVSGEPEQNRKAVELIIQKI 119
Score = 139 (54.0 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 33/94 (35%), Positives = 54/94 (57%)
Query: 19 STAPVKSLSSDPTEKPT-----YIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRS 73
+ +P+ + + TEK T + V L GA++GKGG T+ ++Q +GARIQ+S+
Sbjct: 279 AASPLAASAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKK 338
Query: 74 HEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLT 107
EF PGT +R + I+GT +A +I + +T
Sbjct: 339 GEFVPGTRNRKVTITGT-PAATQAAQYLITQRIT 371
Score = 100 (40.3 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 109 LHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLN 168
L E D G+K + + VP + G+I+GK G T+ + + + A I+IS+ G
Sbjct: 289 LGTEKSTD--GSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTR 346
Query: 169 DRLVTLTGTLDEQMRALELILLKLS 193
+R VT+TGT A LI +++
Sbjct: 347 NRKVTITGTPAATQAAQYLITQRIT 371
>UNIPROTKB|Q15366 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0005737
"cytoplasm" evidence=IDA;NAS] [GO:0016071 "mRNA metabolic process"
evidence=NAS] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IPI] [GO:0050687 "negative regulation of defense response
to virus" evidence=IMP] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0032480 "negative
regulation of type I interferon production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 Reactome:REACT_6900 GO:GO:0005654 GO:GO:0043161
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0045087 EMBL:CH471054
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 EMBL:AC068889
GO:GO:0000398 EMBL:AC023509 GO:GO:0032480 GO:GO:0050687
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
EMBL:X78136 EMBL:AB188306 EMBL:AK292141 EMBL:AB208825 EMBL:BC001155
EMBL:BC071942 EMBL:BC107688 IPI:IPI00012066 IPI:IPI00216689
IPI:IPI00470509 IPI:IPI00791223 IPI:IPI00796337 PIR:S65679
RefSeq:NP_001092090.1 RefSeq:NP_001122383.1 RefSeq:NP_001122384.1
RefSeq:NP_001122385.1 RefSeq:NP_001122386.1 RefSeq:NP_005007.2
RefSeq:NP_114366.1 UniGene:Hs.546271 PDB:2AXY PDB:2JZX PDB:2P2R
PDB:2PQU PDB:2PY9 PDBsum:2AXY PDBsum:2JZX PDBsum:2P2R PDBsum:2PQU
PDBsum:2PY9 ProteinModelPortal:Q15366 SMR:Q15366 DIP:DIP-58934N
IntAct:Q15366 MINT:MINT-96192 STRING:Q15366 PhosphoSite:Q15366
DMDM:6707736 PaxDb:Q15366 PeptideAtlas:Q15366 PRIDE:Q15366
DNASU:5094 Ensembl:ENST00000359282 Ensembl:ENST00000359462
Ensembl:ENST00000439930 Ensembl:ENST00000447282
Ensembl:ENST00000546463 Ensembl:ENST00000548933
Ensembl:ENST00000552296 GeneID:5094 KEGG:hsa:5094 UCSC:uc001sdl.4
CTD:5094 GeneCards:GC12P053844 HGNC:HGNC:8648 HPA:HPA038356
MIM:601210 neXtProt:NX_Q15366 PharmGKB:PA32987 InParanoid:Q15366
KO:K13162 OMA:CVVMLEL ChiTaRS:PCBP2 EvolutionaryTrace:Q15366
GenomeRNAi:5094 NextBio:19648 ArrayExpress:Q15366 Bgee:Q15366
CleanEx:HS_PCBP2 Genevestigator:Q15366 GermOnline:ENSG00000197111
Uniprot:Q15366
Length = 365
Score = 194 (73.4 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 51/176 (28%), Positives = 92/176 (52%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G ++ + +SGARI +S + +RII ++G + I +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN-----CPERIITLAGPTNAIFK 70
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
A ++IDKL ++ + ++ LRL+VP S CGS+IGK G IK + + A
Sbjct: 71 AFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQ 130
Query: 155 IKIS--RLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYS--QTMTVPY 206
++++ L +S +R +T+ G + ++ I + + E S + +T+PY
Sbjct: 131 VQVAGDMLPNS----TERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPY 182
Score = 114 (45.2 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 26/69 (37%), Positives = 46/69 (66%)
Query: 255 RTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQR 314
+T S + + ++ IG ++GR G I EI Q+SGA+IK+++ + G+++R+VTI+G
Sbjct: 286 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVE---GSTDRQVTITGSAA 342
Query: 315 SIRTAESMI 323
SI A+ +I
Sbjct: 343 SISLAQYLI 351
Score = 107 (42.7 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 34/125 (27%), Positives = 56/125 (44%)
Query: 27 SSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIM 86
S+ + P +R +V G++IGKGG I + + +GA++Q++ + P +T+R I
Sbjct: 90 STAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG--DMLPNSTERAIT 147
Query: 87 ISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKS 146
I+G I+ V + +L L Q+ G R P S +I G S
Sbjct: 148 IAGIPQSIIECVKQICVVMLETL---SQSPPKGVTIPYR---PKPSSSPVIFAGGQDRYS 201
Query: 147 FMDDS 151
DS
Sbjct: 202 TGSDS 206
>RGD|1309626 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0031625 "ubiquitin
protein ligase binding" evidence=ISO] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0050687 "negative regulation of defense response to virus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1309626 GO:GO:0003723 eggNOG:NOG315872
HOVERGEN:HBG053520 CTD:5094 KO:K13162 IPI:IPI00464805 EMBL:BC078906
RefSeq:NP_001013241.1 UniGene:Rn.106644 ProteinModelPortal:Q6AYU5
SMR:Q6AYU5 PRIDE:Q6AYU5 GeneID:363005 KEGG:rno:363005
UCSC:RGD:1309626 NextBio:682109 Genevestigator:Q6AYU5
Uniprot:Q6AYU5
Length = 365
Score = 194 (73.4 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 51/176 (28%), Positives = 92/176 (52%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G ++ + +SGARI +S + +RII ++G + I +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN-----CPERIITLAGPTNAIFK 70
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
A ++IDKL ++ + ++ LRL+VP S CGS+IGK G IK + + A
Sbjct: 71 AFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQ 130
Query: 155 IKIS--RLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYS--QTMTVPY 206
++++ L +S +R +T+ G + ++ I + + E S + +T+PY
Sbjct: 131 VQVAGDMLPNS----TERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPY 182
Score = 114 (45.2 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 26/69 (37%), Positives = 46/69 (66%)
Query: 255 RTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQR 314
+T S + + ++ IG ++GR G I EI Q+SGA+IK+++ + G+++R+VTI+G
Sbjct: 286 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVE---GSTDRQVTITGSAA 342
Query: 315 SIRTAESMI 323
SI A+ +I
Sbjct: 343 SISLAQYLI 351
Score = 107 (42.7 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 34/125 (27%), Positives = 56/125 (44%)
Query: 27 SSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIM 86
S+ + P +R +V G++IGKGG I + + +GA++Q++ + P +T+R I
Sbjct: 90 STAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG--DMLPNSTERAIT 147
Query: 87 ISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKS 146
I+G I+ V + +L L Q+ G R P S +I G S
Sbjct: 148 IAGIPQSIIECVKQICVVMLETL---SQSPPKGVTIPYR---PKPSSSPVIFAGGQDRYS 201
Query: 147 FMDDS 151
DS
Sbjct: 202 TGSDS 206
>CGD|CAL0000592 [details] [associations]
symbol:orf19.5627 species:5476 "Candida albicans" [GO:0000784
"nuclear chromosome, telomeric region" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0043409 "negative regulation of MAPK cascade" evidence=IEA]
[GO:0006469 "negative regulation of protein kinase activity"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=IEA] [GO:0007004 "telomere maintenance via telomerase"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 CGD:CAL0000592 GO:GO:0003723 EMBL:AACQ01000034
eggNOG:NOG315872 RefSeq:XP_719187.1 ProteinModelPortal:Q5ABS3
GeneID:3639231 KEGG:cal:CaO19.5627 Uniprot:Q5ABS3
Length = 368
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 88/339 (25%), Positives = 151/339 (44%)
Query: 6 SSYVPSPDVHGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSG 65
SS + + + ST P S+ Y R LVS AG +IG G I+ ++++
Sbjct: 42 SSSTLTTSIVDQSSTLPSLQDKSNIDALINY-RVLVSAKEAGCLIGTNGQVIDSIRNETN 100
Query: 66 ARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE---------LHAEDQAD 116
+ +SR PG+ +RI+ +SG +D+ +A+ L+ L
Sbjct: 101 TKAGISR---LIPGSHERILTVSGKLDDCAKALSYFAQALINANIESYNYFPLKQLSSTP 157
Query: 117 DVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYY-GLNDRLVTLT 175
+ T LRL++PNS G++IG GA I+ ++ + S+ S+ G N+RLV L
Sbjct: 158 NTEETTILRLLIPNSQMGTLIGSKGARIQQLQNNFNISMIASK---SFLPGSNERLVELQ 214
Query: 176 GTLDEQMRALELILLKLSEDTLYSQTM-TVPYTYAGVFFSGFHGMPYGXXXXXXXXXXHN 234
GT+D+ +L +I L ED +S + T Y G ++ H + +N
Sbjct: 215 GTVDDLYDSLRIISRCLIED--FSSIVGTTYYVPRGNTYNNNHSHSHSHNNTNNTNINNN 272
Query: 235 TAAHYGPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSD 294
N + ++T TI ++ +G ++G+ G I + ++SGA I +S+
Sbjct: 273 -------NNNNNNTHGSGGNKTTD-TISFPNDIVGALIGKRGSRIDGVRKVSGAMIAISE 324
Query: 295 RGDFFSGTSERKVTISGPQRSIRTAESMIMQKVAYASDR 333
G +ER TI+G ++ A+ MI Q +R
Sbjct: 325 A---IEGENERVFTITGSSHAVDKAKQMIYQNFKREEER 360
>MGI|MGI:108202 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=IEA] [GO:0050687 "negative regulation of defense response
to virus" evidence=ISO] [GO:0051607 "defense response to virus"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:108202 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0003677 GO:GO:0045087
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 GO:GO:0050687
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094 KO:K13162 OMA:CVVMLEL
ChiTaRS:PCBP2 EMBL:L19661 EMBL:X75947 EMBL:X97982 EMBL:AF236845
EMBL:AF236842 EMBL:AF236843 EMBL:AF236844 IPI:IPI00127707
IPI:IPI00221796 IPI:IPI00221799 PIR:S78515 RefSeq:NP_001096635.1
RefSeq:NP_001096636.1 RefSeq:NP_035172.2 UniGene:Mm.236513
ProteinModelPortal:Q61990 SMR:Q61990 IntAct:Q61990 STRING:Q61990
PhosphoSite:Q61990 REPRODUCTION-2DPAGE:Q61990 PaxDb:Q61990
PRIDE:Q61990 Ensembl:ENSMUST00000077037 Ensembl:ENSMUST00000078404
Ensembl:ENSMUST00000108838 GeneID:18521 KEGG:mmu:18521
UCSC:uc007xvy.2 UCSC:uc007xvz.2 UCSC:uc009vat.1 InParanoid:Q61990
NextBio:294276 Bgee:Q61990 CleanEx:MM_PCBP2 Genevestigator:Q61990
GermOnline:ENSMUSG00000056851 Uniprot:Q61990
Length = 362
Score = 193 (73.0 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 50/174 (28%), Positives = 91/174 (52%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G ++ + +SGARI +S + +RII ++G + I +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN-----CPERIITLAGPTNAIFK 70
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
A ++IDKL ++ + ++ LRL+VP S CGS+IGK G IK + + A
Sbjct: 71 AFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQ 130
Query: 155 IKIS--RLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPY 206
++++ L +S +R +T+ G + ++ I + + E + +T+PY
Sbjct: 131 VQVAGDMLPNS----TERAITIAGIPQSIIECVKQICVVMLESP--PKGVTIPY 178
Score = 114 (45.2 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 26/69 (37%), Positives = 46/69 (66%)
Query: 255 RTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQR 314
+T S + + ++ IG ++GR G I EI Q+SGA+IK+++ + G+++R+VTI+G
Sbjct: 283 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVE---GSTDRQVTITGSAA 339
Query: 315 SIRTAESMI 323
SI A+ +I
Sbjct: 340 SISLAQYLI 348
Score = 103 (41.3 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 27 SSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIM 86
S+ + P +R +V G++IGKGG I + + +GA++Q++ + P +T+R I
Sbjct: 90 STAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG--DMLPNSTERAIT 147
Query: 87 ISGTIDEILRAV 98
I+G I+ V
Sbjct: 148 IAGIPQSIIECV 159
Score = 99 (39.9 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 29/75 (38%), Positives = 38/75 (50%)
Query: 122 TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQ 181
T L +PN G IIG+ GA I S A IKI+ + G DR VT+TG+
Sbjct: 285 TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIA---NPVEGSTDRQVTITGSAASI 341
Query: 182 MRALELILLKLSEDT 196
A LI ++LS +T
Sbjct: 342 SLAQYLINVRLSSET 356
>ZFIN|ZDB-GENE-070424-78 [details] [associations]
symbol:zgc:162999 "zgc:162999" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
Pfam:PF13014 PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-070424-78
GO:GO:0003723 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 EMBL:BC135088 IPI:IPI00845944
RefSeq:NP_001083021.1 UniGene:Dr.122660 ProteinModelPortal:A4IGG5
SMR:A4IGG5 PRIDE:A4IGG5 GeneID:100038772 KEGG:dre:100038772
NextBio:20788560 Bgee:A4IGG5 Uniprot:A4IGG5
Length = 350
Score = 191 (72.3 bits), Expect = 3.8e-21, Sum P(2) = 3.8e-21
Identities = 58/188 (30%), Positives = 97/188 (51%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G T+ + +S ARI +S + +RI+ I+G D I +
Sbjct: 18 IRLLMHGKEVGSIIGKKGETVKKMREESSARINVSEGN-----CPERIVTITGPTDAIFK 72
Query: 97 AVDLVIDKLLTEL---HAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQA 153
A ++ K ++ + QA T LRL+VP S CGS+IGK G+ IK + + A
Sbjct: 73 AFAMIAYKFEEDIINSMSNSQATSKPPVT-LRLVVPASQCGSLIGKGGSKIKEMRESTGA 131
Query: 154 VIKIS--RLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPY----T 207
++++ L +S +R VT++GT + ++ ++ I + + E + T+PY
Sbjct: 132 QVQVAGDMLPNS----TERAVTISGTPEAIIQCVKQICVVMLESP--PKGATIPYRPKPA 185
Query: 208 YAGVFFSG 215
A V FSG
Sbjct: 186 TAPVIFSG 193
Score = 124 (48.7 bits), Expect = 7.3e-13, Sum P(2) = 7.3e-13
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 23 VKSLS-SDPTEKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGT 80
+ S+S S T KP +R +V G++IGKGGS I + + +GA++Q++ + P +
Sbjct: 86 INSMSNSQATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAG--DMLPNS 143
Query: 81 TDRIIMISGTIDEILRAV 98
T+R + ISGT + I++ V
Sbjct: 144 TERAVTISGTPEAIIQCV 161
Score = 114 (45.2 bits), Expect = 3.8e-21, Sum P(2) = 3.8e-21
Identities = 27/68 (39%), Positives = 45/68 (66%)
Query: 256 TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRS 315
T+ LTI ++ IG ++GR G I EI Q+SGA+IK+++ G+S+R++TI+G +
Sbjct: 268 THELTI--PNDLIGCIIGRQGTKINEIRQMSGAQIKIANA---MEGSSDRQITITGTPAN 322
Query: 316 IRTAESMI 323
I A+ +I
Sbjct: 323 ISLAQYLI 330
Score = 85 (35.0 bits), Expect = 7.3e-10, Sum P(2) = 7.3e-10
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 126 LIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGT 177
L +PN G IIG+ G I S A IKI+ ++ G +DR +T+TGT
Sbjct: 271 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIA---NAMEGSSDRQITITGT 319
>ZFIN|ZDB-GENE-040426-2122 [details] [associations]
symbol:zgc:65870 "zgc:65870" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-040426-2122
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CU856621
EMBL:AL954840 EMBL:CABZ01011786 EMBL:CABZ01011787 EMBL:CABZ01011788
EMBL:CABZ01011789 EMBL:CABZ01011790 EMBL:CU462880 EMBL:CU469461
IPI:IPI01016643 Ensembl:ENSDART00000137945 Bgee:F1Q8M8
Uniprot:F1Q8M8
Length = 464
Score = 194 (73.4 bits), Expect = 6.2e-21, Sum P(2) = 6.2e-21
Identities = 58/202 (28%), Positives = 100/202 (49%)
Query: 9 VPSPDVHGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARI 68
+P PD H + + + +R L+ G++IGK G T+ + +S ARI
Sbjct: 3 LPGPDSHVRMNCE--QDFGDGGMNVTLTLRLLMHGKEVGSIIGKKGETVKRIREESSARI 60
Query: 69 QLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTK--TKLRL 126
+S +RII I+G + + RA ++ KL +L A V +K LRL
Sbjct: 61 NISEG-----SCPERIITITGATECVFRAFTMITIKLEEDLAALVANGTVTSKPPVTLRL 115
Query: 127 IVPNSSCGSIIGKAGATIKSFMDDSQAVIKISR--LDHSYYGLNDRLVTLTGTLDEQMRA 184
++P S CGS+IGK G+ IK + + A ++++ L +S +R VT++G+ D ++
Sbjct: 116 VIPASQCGSLIGKGGSKIKEIREKTGAQVQVAGDLLPNS----TERGVTISGSQDAIIQC 171
Query: 185 LELILLKLSEDTLYSQTMTVPY 206
++LI + E + T+PY
Sbjct: 172 VKLICTVILESP--PKGATIPY 191
Score = 115 (45.5 bits), Expect = 6.2e-21, Sum P(2) = 6.2e-21
Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 255 RTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQR 314
+T S + + ++ IG ++GR G I EI Q+SGA+IK+ + D TS+R VTI+G
Sbjct: 278 QTASQELLIPNDLIGSIIGRQGTKINEIRQVSGAQIKIGSQLD---STSDRHVTITGSPI 334
Query: 315 SIRTAESMI 323
SI A+ +I
Sbjct: 335 SINLAQYLI 343
>UNIPROTKB|F8VWX1 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 IPI:IPI01020747
ProteinModelPortal:F8VWX1 SMR:F8VWX1 Ensembl:ENST00000549571
ArrayExpress:F8VWX1 Bgee:F8VWX1 Uniprot:F8VWX1
Length = 173
Score = 164 (62.8 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 32/74 (43%), Positives = 52/74 (70%)
Query: 36 YIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEIL 95
+++ L+ + AG++IGKGG TI Q ++GA I+LS+S +F+PGTT+R+ +I GT+ E L
Sbjct: 14 FLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTV-EAL 72
Query: 96 RAVDLVIDKLLTEL 109
AV I + + E+
Sbjct: 73 NAVHGFIAEKIREM 86
Score = 116 (45.9 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 22/77 (28%), Positives = 43/77 (55%)
Query: 251 NKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTIS 310
+++D L + + G ++G+GG+ I+++ + +GA IK+S DF+ GT+ER I
Sbjct: 7 SREDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQ 66
Query: 311 GPQRSIRTAESMIMQKV 327
G ++ I +K+
Sbjct: 67 GTVEALNAVHGFIAEKI 83
Score = 111 (44.1 bits), Expect = 0.00015, P = 0.00015
Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 19 STAPVKSLSSDP--TEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSR 72
S KS SDP T + ++ +V N AG +IGKGG+T+ QSGA +QLS+
Sbjct: 117 SPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQ 172
Score = 107 (42.7 bits), Expect = 9.5e-08, Sum P(2) = 9.5e-08
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMR 183
L++++P+ + GSIIGK G TI ++ A IK+S+ Y G +R+ + GT+ E +
Sbjct: 15 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTV-EALN 73
Query: 184 ALE-LILLKLSE 194
A+ I K+ E
Sbjct: 74 AVHGFIAEKIRE 85
Score = 99 (39.9 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 18/37 (48%), Positives = 30/37 (81%)
Query: 123 KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISR 159
++++IVPNS+ G IIGK GAT+K+ M+ S A +++S+
Sbjct: 136 QVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQ 172
Score = 67 (28.6 bits), Expect = 6.4e-17, Sum P(2) = 6.4e-17
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 255 RTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDR 295
R N + I V + G ++G+GG + + + SGA +++S +
Sbjct: 133 RANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQK 173
>UNIPROTKB|E1BVU6 [details] [associations]
symbol:LOC100858906 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 OMA:FWAPSVL EMBL:AADN02031620
EMBL:AADN02034412 EMBL:AADN02034413 EMBL:AADN02034414
IPI:IPI00682929 Ensembl:ENSGALT00000007004 Uniprot:E1BVU6
Length = 339
Score = 180 (68.4 bits), Expect = 4.2e-20, Sum P(2) = 4.2e-20
Identities = 53/175 (30%), Positives = 90/175 (51%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G + QSGARI +S + +RI+ I+G D I +
Sbjct: 16 IRLLMHGKEVGSIIGKMGCLHVVTREQSGARINISEGN-----CPERIVTITGPTDAIFK 70
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK---TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQA 153
A ++ K ++ ++ T LRL+VP S CGS+IGK G+ IK + + A
Sbjct: 71 AFAMIAYKFEEDI-TNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGA 129
Query: 154 VIKIS--RLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPY 206
++++ L +S +R VT++GT D ++ ++ I + + E + T+PY
Sbjct: 130 QVQVAGDMLPNS----TERAVTISGTPDAIIQCVKQICVVMLESP--PKGATIPY 178
Score = 124 (48.7 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 27/73 (36%), Positives = 45/73 (61%)
Query: 27 SSDPTEKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRII 85
+S T KP +R +V G++IGKGGS I + + +GA++Q++ + P +T+R +
Sbjct: 89 NSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG--DMLPNSTERAV 146
Query: 86 MISGTIDEILRAV 98
ISGT D I++ V
Sbjct: 147 TISGTPDAIIQCV 159
Score = 117 (46.2 bits), Expect = 4.2e-20, Sum P(2) = 4.2e-20
Identities = 28/68 (41%), Positives = 46/68 (67%)
Query: 256 TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRS 315
T+ LTI ++ IG ++GR G I EI Q+SGA+IK+++ + G+SER++TI+G +
Sbjct: 263 THELTI--PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE---GSSERQITITGTPAN 317
Query: 316 IRTAESMI 323
I A+ +I
Sbjct: 318 ISLAQYLI 325
Score = 82 (33.9 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 24/70 (34%), Positives = 34/70 (48%)
Query: 126 LIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRAL 185
L +PN G IIG+ G I S A IKI+ G ++R +T+TGT A
Sbjct: 266 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE---GSSERQITITGTPANISLAQ 322
Query: 186 ELILLKLSED 195
LI +L+ +
Sbjct: 323 YLINARLTSE 332
>UNIPROTKB|D4ADH2 [details] [associations]
symbol:D4ADH2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 OrthoDB:EOG46WZ8K IPI:IPI00197192
PRIDE:D4ADH2 Ensembl:ENSRNOT00000026359 OMA:IFHICAV Uniprot:D4ADH2
Length = 311
Score = 224 (83.9 bits), Expect = 6.2e-18, P = 6.2e-18
Identities = 76/302 (25%), Positives = 145/302 (48%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++I K ++ Q + GARI +S + P +RII ++G + I +
Sbjct: 16 IRLLMHGKEVGSIIRKSRESVKKLQ-EKGARINISEGN--CP---ERIITLAGPTNAIFK 69
Query: 97 AVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIK 156
A ++IDK ++ + ++ + +VP S CGS+IGK IK + + A ++
Sbjct: 70 AFAMIIDKPEEDISSSMTNSTAASRPPVT-VVPASQCGSLIGKG--KIKEIRESTGAQVQ 126
Query: 157 ISRLDHSYYGLNDRLVTLTGTLD---EQMRALELILLKLSEDTLYSQTMTVPYTYAG--- 210
+ + +R +T+ G L E ++ + +++L+ + + + P +AG
Sbjct: 127 AA--GNMLPNSTERAITIAGILPSIIECVKQICVVMLETPRRAYWPKPSSSPVIFAGGQA 184
Query: 211 VFFSGFHGMPYGXXXXXXXXXXHNTA----AHYGPNMGGRKFQNNKDDRTNSLTIGVADE 266
G + MP NT P + G ++ +T S + + ++
Sbjct: 185 CTIQGHYAMPQPDLTKLHHMTHGNTGFSGIESSSPEVKGY-LGLDESAQTTSHELTLPND 243
Query: 267 HIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQK 326
IG ++GR I EI Q+SGA+IK ++ + G+++R+VTI+GP SI A+ +I +
Sbjct: 244 LIGCIIGRQDAKINEIRQMSGAQIKTANPVE---GSTDRQVTITGPAASISLAQYLINAR 300
Query: 327 VA 328
++
Sbjct: 301 LS 302
>ASPGD|ASPL0000045500 [details] [associations]
symbol:AN10257 species:162425 "Emericella nidulans"
[GO:0010834 "telomere maintenance via telomere shortening"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:BN001307 GO:GO:0003723
EnsemblFungi:CADANIAT00008760 OMA:ESENNAE Uniprot:C8VLW6
Length = 465
Score = 181 (68.8 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 59/194 (30%), Positives = 94/194 (48%)
Query: 4 NESSYVPSPDVHGKRSTAPVKSLSSDPTEKPTYI--RFLVSNPLAGAVIGKGGSTINDFQ 61
+E+ + S HG+ A +S P ++ +I R ++S+ A VIGKGG ++ +
Sbjct: 77 SETQPIQSTASHGE--AAGNQSEQQRPQDESNWIHIRAVISSQEAATVIGKGGENVSQIR 134
Query: 62 SQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTK 121
SGA+ +S ++ G +RI+ +SG D + +A L+I L E D A +K
Sbjct: 135 RLSGAKCTVS---DYSRGAVERILTVSGPQDAVAKAFGLIIRTLNNE--PLDAASTAQSK 189
Query: 122 T-KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDE 180
T LRL++P+ GSIIGK G I+ D S A + S D +R + + G D
Sbjct: 190 TYPLRLLIPHILIGSIIGKGGTRIREIQDASGARLNAS--DACLPLSTERSLVILGVADA 247
Query: 181 QMRALELILLKLSE 194
A + + L E
Sbjct: 248 VHIATYYVAVTLVE 261
Score = 133 (51.9 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 31/94 (32%), Positives = 54/94 (57%)
Query: 234 NTAAHYGPNMGGRKFQNNKDDRTNSLTIG--VADEHIGFVVGRGGRNIMEISQISGARIK 291
+TA+H G G + Q D +N + I ++ + V+G+GG N+ +I ++SGA+
Sbjct: 84 STASH-GEAAGNQSEQQRPQDESNWIHIRAVISSQEAATVIGKGGENVSQIRRLSGAKCT 142
Query: 292 VSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQ 325
VSD + G ER +T+SGPQ ++ A +I++
Sbjct: 143 VSD---YSRGAVERILTVSGPQDAVAKAFGLIIR 173
Score = 114 (45.2 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 31/94 (32%), Positives = 53/94 (56%)
Query: 23 VKSLSSDP------TEKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHE 75
+++L+++P + TY +R L+ + L G++IGKGG+ I + Q SGAR L+ S
Sbjct: 172 IRTLNNEPLDAASTAQSKTYPLRLLIPHILIGSIIGKGGTRIREIQDASGAR--LNASDA 229
Query: 76 FFPGTTDRIIMISGTIDEILRAVDLVIDKLLTEL 109
P +T+R ++I G D + A V L+ +L
Sbjct: 230 CLPLSTERSLVILGVADAVHIATYYVAVTLVEQL 263
Score = 107 (42.7 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 26/71 (36%), Positives = 40/71 (56%)
Query: 125 RLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRA 184
++ +PN G+IIGK GA I S +VIKI+ + N+RLVT+TGT + A
Sbjct: 394 QIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQENS---NERLVTITGTQECNQMA 450
Query: 185 LELILLKLSED 195
L ++ +L +
Sbjct: 451 LYMLYSRLESE 461
Score = 99 (39.9 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 37/132 (28%), Positives = 60/132 (45%)
Query: 205 PYT-YAGVFFSGFHG-MPYGXXXXXXXXXXHNTAAHYGPNMGGRKFQNNKDDRTNSLTIG 262
P T YAG +G H PYG AA G M G+ I
Sbjct: 349 PQTPYAG---AGPHQPTPYGAPQAAQPRGGPTPAAPVGGAMPGQPLTQQ---------IY 396
Query: 263 VADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESM 322
+ ++ +G ++G+GG I EI +SG+ IK+++ + ++ER VTI+G Q + A M
Sbjct: 397 IPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQE---NSNERLVTITGTQECNQMALYM 453
Query: 323 IMQKVAYASDRL 334
+ ++ R+
Sbjct: 454 LYSRLESEKHRI 465
Score = 81 (33.6 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 23/97 (23%), Positives = 45/97 (46%)
Query: 112 EDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRL 171
+ + D +R ++ + ++IGK G + S A +S D+S G +R+
Sbjct: 98 QQRPQDESNWIHIRAVISSQEAATVIGKGGENVSQIRRLSGAKCTVS--DYSR-GAVERI 154
Query: 172 VTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPYTY 208
+T++G D +A LI+ L+ + L + + TY
Sbjct: 155 LTVSGPQDAVAKAFGLIIRTLNNEPLDAASTAQSKTY 191
Score = 79 (32.9 bits), Expect = 0.00053, Sum P(2) = 0.00052
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 268 IGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTA 319
IG ++G+GG I EI SGAR+ SD ++ER + I G ++ A
Sbjct: 202 IGSIIGKGGTRIREIQDASGARLNASDA--CLPLSTERSLVILGVADAVHIA 251
>SGD|S000000437 [details] [associations]
symbol:PBP2 "RNA binding protein" species:4932 "Saccharomyces
cerevisiae" [GO:0010834 "telomere maintenance via telomere
shortening" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 SGD:S000000437 GO:GO:0005634 GO:GO:0005737
GO:GO:0003729 EMBL:BK006936 GO:GO:0030529 RefSeq:NP_009792.3
GeneID:852533 KEGG:sce:YBR233W GeneTree:ENSGT00550000074311
KO:K00565 RefSeq:NP_009795.3 GeneID:852538 KEGG:sce:YBR236C
EMBL:Z36101 PIR:S46109 ProteinModelPortal:P38151 SMR:P38151
DIP:DIP-4947N IntAct:P38151 MINT:MINT-570424 STRING:P38151
PaxDb:P38151 EnsemblFungi:YBR233W CYGD:YBR233w eggNOG:NOG315872
HOGENOM:HOG000000730 OMA:GKHINSV OrthoDB:EOG4CRQ87 NextBio:971589
Genevestigator:P38151 GermOnline:YBR233W GO:GO:0010834
Uniprot:P38151
Length = 413
Score = 189 (71.6 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 51/179 (28%), Positives = 91/179 (50%)
Query: 27 SSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIM 86
S D ++R L A ++G G+TI+ +S++ ARI +S + G +RI+
Sbjct: 59 SPDNVPSDVHLRMLCLVKHASLIVGHKGATISRIKSETSARINISNN---IRGVPERIVY 115
Query: 87 ISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKS 146
+ GT D++ +A +++ LL E ED +D+ + + L++P+ G IIGK G+ ++
Sbjct: 116 VRGTCDDVAKAYGMIVRALLEEHGNEDNGEDI--EISINLLIPHHLMGCIIGKRGSRLRE 173
Query: 147 FMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVP 205
D S A K+ + NDR++T+ G D A+ + +S+ TL + M P
Sbjct: 174 IEDLSAA--KLFASPNQLLLSNDRILTINGVPD----AIHIATFYISQ-TLLNFQMESP 225
Score = 93 (37.8 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 25/83 (30%), Positives = 43/83 (51%)
Query: 113 DQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLV 172
D D+V + LR++ I+G GATI ++ A I IS ++ G+ +R+V
Sbjct: 58 DSPDNVPSDVHLRMLCLVKHASLIVGHKGATISRIKSETSARINIS---NNIRGVPERIV 114
Query: 173 TLTGTLDEQMRALELILLKLSED 195
+ GT D+ +A +I+ L E+
Sbjct: 115 YVRGTCDDVAKAYGMIVRALLEE 137
Score = 84 (34.6 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 19/67 (28%), Positives = 39/67 (58%)
Query: 261 IGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAE 320
I + ++ +G V+G+ G++I + + +G I + D + G+SER++TI G + + A
Sbjct: 335 IFIDEKFVGNVIGKDGKHINSVKESTGCSIIIQDPVE---GSSERRLTIRGTFMASQAAI 391
Query: 321 SMIMQKV 327
+I K+
Sbjct: 392 MLISNKI 398
Score = 72 (30.4 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 20/77 (25%), Positives = 39/77 (50%)
Query: 249 QNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVT 308
++N +D S+ + + +G ++G+ G + EI +S A++ S S ++R +T
Sbjct: 141 EDNGEDIEISINLLIPHHLMGCIIGKRGSRLREIEDLSAAKLFASPNQLLLS--NDRILT 198
Query: 309 ISGPQRSIRTAESMIMQ 325
I+G +I A I Q
Sbjct: 199 INGVPDAIHIATFYISQ 215
>FB|FBgn0262735 [details] [associations]
symbol:Imp "IGF-II mRNA-binding protein" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399 "nervous
system development" evidence=IMP] [GO:0051124 "synaptic growth at
neuromuscular junction" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0007283 "spermatogenesis" evidence=IEP]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
SMART:SM00322 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0051124 GO:GO:0007283 GO:GO:0003723 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 CTD:32009 UniGene:Dm.3773 GeneID:32009
KEGG:dme:Dmel_CG1691 FlyBase:FBgn0262735 GenomeRNAi:32009
NextBio:776342 RefSeq:NP_001036268.2 ProteinModelPortal:Q0KHU2
SMR:Q0KHU2 STRING:Q0KHU2 PRIDE:Q0KHU2 UCSC:CG1691-RI
OrthoDB:EOG4RBP0X PhylomeDB:Q0KHU2 Bgee:Q0KHU2 Uniprot:Q0KHU2
Length = 588
Score = 227 (85.0 bits), Expect = 9.8e-17, P = 9.8e-17
Identities = 78/307 (25%), Positives = 140/307 (45%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
+R LV + + GA+IG+ GSTI QS AR+ + R G+ ++ I I G +
Sbjct: 95 LRILVQSEMVGAIIGRQGSTIRTITQQSRARVDVHRKENV--GSLEKSITIYGNPENCTN 152
Query: 97 AVDLVIDKLLTELHAEDQAD--DVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
A +++ + E + ++ + ++ L+++ N+ G IIGK+G TIK M D+
Sbjct: 153 ACKRILEVMQQEAISTNKGELSPECSEICLKILAHNNLIGRIIGKSGNTIKRIMQDTDTK 212
Query: 155 IKISRL-DHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPYTYAGVFF 213
I +S + D + + L +R++T+ G ++ RA I KL + P + + F
Sbjct: 213 ITVSSINDINSFNL-ERIITVKGLIENMSRAENQISTKLRQSYENDLQAMAPQS---LMF 268
Query: 214 SGFHGMPYGXXXXXXXXXXHNTAAHYGPNMGGRKFQNNK-----------DDRTNSLTIG 262
G H P NT+ + P+ + F +K +D + +
Sbjct: 269 PGLH--PMAMMSTPGNGMVFNTSMPF-PSC--QSFAMSKTPASVVPPVFPNDLQETTYLY 323
Query: 263 VADEHIGFVVGRGGRNIMEISQISGARIKVS--DRGDFFSGTSERKVTISGPQRSIRTAE 320
+ + +G ++G G +I I + S A +K++ D +ERKVTI G A+
Sbjct: 324 IPNNAVGAIIGTRGSHIRSIMRFSNASLKIAPLDADKPLDQQTERKVTIVGTPEGQWKAQ 383
Query: 321 SMIMQKV 327
MI +K+
Sbjct: 384 YMIFEKM 390
Score = 106 (42.4 bits), Expect = 9.6e-08, Sum P(2) = 9.6e-08
Identities = 30/84 (35%), Positives = 45/84 (53%)
Query: 126 LIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHS--YYGLNDRLVTLTGTLDEQMR 183
L +PN++ G+IIG G+ I+S M S A +KI+ LD +R VT+ GT + Q +
Sbjct: 322 LYIPNNAVGAIIGTRGSHIRSIMRFSNASLKIAPLDADKPLDQQTERKVTIVGTPEGQWK 381
Query: 184 ALELILLKLSEDTLYSQTMTVPYT 207
A +I K+ E+ T V T
Sbjct: 382 AQYMIFEKMREEGFMCGTDDVRLT 405
Score = 91 (37.1 bits), Expect = 9.6e-08, Sum P(2) = 9.6e-08
Identities = 22/78 (28%), Positives = 42/78 (53%)
Query: 248 FQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRG--DFFSGTSER 305
F DD ++ + VA +G ++G+GG+N+ E+ +++G+ IK+ + G E
Sbjct: 395 FMCGTDDVRLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALAPPSGGDEET 454
Query: 306 KVTISGPQRSIRTAESMI 323
V I G S+++A+ I
Sbjct: 455 PVHIIGLFYSVQSAQRRI 472
>UNIPROTKB|E2RA50 [details] [associations]
symbol:E2RA50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000002165 NextBio:20851993 Uniprot:E2RA50
Length = 439
Score = 170 (64.9 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 67/241 (27%), Positives = 107/241 (44%)
Query: 1 METNESSYV-PSPDVHGKRSTAPVKSLSSDP-------TEKPTYIRFLVSNPLAGAVIGK 52
MET + P+ + +G+ P + + + T++ +R L+ + AGAVIGK
Sbjct: 1 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 60
Query: 53 GGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAE 112
GG I ++ A + + S P +RI+ IS I+ I + +I L H +
Sbjct: 61 GGKNIKALRTDYNASVSVPDSSG--P---ERILSISADIETIGEILKKIIPTLEEYQHYK 115
Query: 113 DQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISR--LDHSYYGLNDR 170
D +LRL++ S G IIG GA IK F ++Q IK+ + HS DR
Sbjct: 116 GSDFDC----ELRLLIHQSLAGGIIGVKGAKIKKFGGNTQTTIKLFQECCPHS----TDR 167
Query: 171 LVTLTGTLDEQMRALELILLKLSEDTLYSQTMTV-P------YTYAG--VFFSGFHGMPY 221
+V + G D + +++IL +SE + + P Y Y G + F G P
Sbjct: 168 VVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPV 227
Query: 222 G 222
G
Sbjct: 228 G 228
Score = 100 (40.3 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 24/90 (26%), Positives = 45/90 (50%)
Query: 244 GGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTS 303
GGR + + + + + G ++G+GG+ I +I SGA IK+ + G+
Sbjct: 351 GGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSE 407
Query: 304 ERKVTISGPQRSIRTAESMIMQKVAYASDR 333
+R +TI+G Q I+ A+ ++ V S +
Sbjct: 408 DRIITITGTQDQIQNAQYLLQNSVKQYSGK 437
>CGD|CAL0001510 [details] [associations]
symbol:PBP2 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0010834 "telomere maintenance via
telomere shortening" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 CGD:CAL0001510 GO:GO:0003723
EMBL:AACQ01000046 EMBL:AACQ01000047 eggNOG:NOG315872
RefSeq:XP_718039.1 RefSeq:XP_718106.1 ProteinModelPortal:Q5A8H8
STRING:Q5A8H8 GeneID:3640267 GeneID:3640340 KEGG:cal:CaO19.13193
KEGG:cal:CaO19.5771 HOGENOM:HOG000247928 Uniprot:Q5A8H8
Length = 529
Score = 178 (67.7 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 53/187 (28%), Positives = 90/187 (48%)
Query: 2 ETNESSYVPSPDVHGKRSTAPVKSLSSDPT------EKPTYIRFLVSNPL--AGAVIGKG 53
ET E +Y PS H S SS P + PT+I+ + P+ A ++G+
Sbjct: 120 ETLEPAYAPSESDHADDQNTGSSS-SSKPVSNHRDRDDPTFIQLRMYCPVKEASTIVGRK 178
Query: 54 GSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAED 113
G TIN + ++ RI +S E G +RI+ + G + + RA L+ +L E ED
Sbjct: 179 GETINHLREKANVRITVS---ENLKGVPERIVAVKGPAENVARAFGLITRVILEE--PED 233
Query: 114 QADDVGTKT-KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLV 172
+ + ++ L+L++P+ G IIGK G + ++S A +K + Y DR++
Sbjct: 234 EPASINSQQYNLKLLIPHPMIGFIIGKQGLKFREIEENSAAKLKAAENALPYS--TDRVL 291
Query: 173 TLTGTLD 179
++ G D
Sbjct: 292 SVMGVGD 298
Score = 92 (37.4 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 254 DRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGAR-IKVS-DRGD--FFSG----TSER 305
D+ N + VA+ IG V+G+ G NI I + S +K+ D+G G T+ R
Sbjct: 440 DKYNQ-DVFVANSSIGSVIGKRGNNIKHIRETSACTYVKIEPDKGQSMMLGGGKGMTNIR 498
Query: 306 KVTISGPQRSIRTAESMIMQKV 327
K+T++G SI+TA +I Q++
Sbjct: 499 KLTLTGTLNSIQTAIYLINQRI 520
Score = 89 (36.4 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 19/70 (27%), Positives = 38/70 (54%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
++ L+ +P+ G +IGK G + + S A+++ + + P +TDR++ + G D I
Sbjct: 245 LKLLIPHPMIGFIIGKQGLKFREIEENSAAKLKAAENA--LPYSTDRVLSVMGVGDAIHI 302
Query: 97 AVDLVIDKLL 106
AV + +L
Sbjct: 303 AVYYIAQVML 312
Score = 86 (35.3 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 29/78 (37%), Positives = 41/78 (52%)
Query: 126 LIVPNSSCGSIIGKAGATIKSFMDDSQAV-IKI------SRLDHSYYGL-NDRLVTLTGT 177
+ V NSS GS+IGK G IK + S +KI S + G+ N R +TLTGT
Sbjct: 446 VFVANSSIGSVIGKRGNNIKHIRETSACTYVKIEPDKGQSMMLGGGKGMTNIRKLTLTGT 505
Query: 178 LDEQMRALELILLKLSED 195
L+ A+ LI +++ D
Sbjct: 506 LNSIQTAIYLINQRINAD 523
Score = 79 (32.9 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 29/115 (25%), Positives = 51/115 (44%)
Query: 117 DVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTG 176
D T +LR+ P +I+G+ G TI + + I +S + G+ +R+V + G
Sbjct: 155 DDPTFIQLRMYCPVKEASTIVGRKGETINHLREKANVRITVSE---NLKGVPERIVAVKG 211
Query: 177 TLDEQMRALELI---LLKLSEDT-------LYSQTMTVPYTYAGVFFSGFHGMPY 221
+ RA LI +L+ ED Y+ + +P+ G F G G+ +
Sbjct: 212 PAENVARAFGLITRVILEEPEDEPASINSQQYNLKLLIPHPMIG-FIIGKQGLKF 265
>UNIPROTKB|E1C453 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IEA] [GO:0010988 "regulation
of low-density lipoprotein particle clearance" evidence=IEA]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IEA] [GO:0048260
"positive regulation of receptor-mediated endocytosis"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0072369 "regulation of lipid transport by
positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 CTD:3190
GeneTree:ENSGT00550000074311 KO:K12886 OMA:KALRTDX
InterPro:IPR012987 Pfam:PF08067 EMBL:AADN02064910 EMBL:AADN02064911
IPI:IPI00684854 RefSeq:XP_003643054.1 Ensembl:ENSGALT00000020563
GeneID:427458 KEGG:gga:427458 Uniprot:E1C453
Length = 426
Score = 168 (64.2 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 67/237 (28%), Positives = 105/237 (44%)
Query: 1 METNESSYV-PSPDVHGKRSTAPVKSLS----SDPTEKPTYIRFLVSNPLAGAVIGKGGS 55
MET + + + +GKR ++ S T++ +R L+ + AGAVIGKGG
Sbjct: 1 METEQQEETFTNTETNGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGK 60
Query: 56 TINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQA 115
I ++ A + + S P +RI+ IS I+ I + +I L H +
Sbjct: 61 NIKALRTDYNASVSVPDSSG--P---ERILSISADIETIGEILKKIIPTLEEYQHYKGSD 115
Query: 116 DDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISR--LDHSYYGLNDRLVT 173
D +LRL++ S G IIG GA IK +++Q IK+ + HS DR+V
Sbjct: 116 FDC----ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHS----TDRVVL 167
Query: 174 LTGTLDEQMRALELILLKLSEDTLYSQTMTV-P------YTYAG-VFFSGFHGMPYG 222
+ G D + +++IL +SE + + P Y Y G F G P G
Sbjct: 168 IGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMFDDRRGRPVG 224
Score = 100 (40.3 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 24/90 (26%), Positives = 45/90 (50%)
Query: 244 GGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTS 303
GGR + + + + + G ++G+GG+ I +I SGA IK+ + G+
Sbjct: 338 GGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSE 394
Query: 304 ERKVTISGPQRSIRTAESMIMQKVAYASDR 333
+R +TI+G Q I+ A+ ++ V S +
Sbjct: 395 DRIITITGTQDQIQNAQYLLQNSVKQYSGK 424
>UNIPROTKB|F1LT74 [details] [associations]
symbol:F1LT74 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 IPI:IPI00568045
Ensembl:ENSRNOT00000050969 OMA:YNISMIA Uniprot:F1LT74
Length = 320
Score = 215 (80.7 bits), Expect = 3.5e-16, P = 3.5e-16
Identities = 78/310 (25%), Positives = 146/310 (47%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++I K ++ Q +S ARI +S + +RII ++G + I +
Sbjct: 19 IRLLMHGKEVGSIIRKSRESVKKLQEKS-ARINISEGN-----CPERIITLAGPTNAIFK 72
Query: 97 AVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIK 156
A ++IDK ++ + ++ + +VP S CGS+IGK TIK + + A ++
Sbjct: 73 AFAMIIDKPEEDISSSMTNSTAASRPPVT-VVPASQCGSLIGKG--TIKEIRESTGAQVQ 129
Query: 157 ISRLDHSYYGLNDRLVTLTGTLDEQMRALELI-LLKLSEDTLYSQTMTVPYTYAGV-FFS 214
+ + +R +T+ G L + ++ I ++ L +L S + P+T + +
Sbjct: 130 AA--GNMLPNSTERAITIAGILPSIIECVKQICVVMLETPSLRSTCASFPHTTTSMCLYR 187
Query: 215 GFHGMPYGXXXXXXXXXX--------HNTAAHYG--------PNMGGRKFQNNKDDRTNS 258
G P H T + G P + G ++ +T S
Sbjct: 188 DLEGPPLEACTIQGHYAMPQPDLTKLHQTHGNTGFSGIESSSPEVKGY-LGLDESAQTTS 246
Query: 259 LTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRT 318
+ + ++ IG ++GR G I EI Q+SGA+IK ++ + G+++R+VTI+GP SI
Sbjct: 247 HELTLPNDLIGCIIGRQGAKINEIRQMSGAQIKTANPVE---GSTDRQVTITGPAASISL 303
Query: 319 AESMIMQKVA 328
A+ +I +++
Sbjct: 304 AQYLINARLS 313
>UNIPROTKB|E2RJ54 [details] [associations]
symbol:E2RJ54 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 OMA:INPWANG EMBL:AAEX03026697
Ensembl:ENSCAFT00000027729 NextBio:20855871 Uniprot:E2RJ54
Length = 439
Score = 164 (62.8 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
Identities = 65/241 (26%), Positives = 105/241 (43%)
Query: 1 METNESSYV-PSPDVHGKRSTAPVKSLSSDP-------TEKPTYIRFLVSNPLAGAVIGK 52
MET + P+ + +G+ P + + + T++ +R L+ + AGAVIGK
Sbjct: 1 METEQPEETFPNTETNGEFGKCPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 60
Query: 53 GGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAE 112
GG I + A + + S P +RI+ IS I+ I + +I L H +
Sbjct: 61 GGKNIKALHTDYNASVSVPDSSG--P---ERILSISADIETIGEILKKIIPTLEEYQHYK 115
Query: 113 DQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISR--LDHSYYGLNDR 170
D +LRL++ S G IIG GA IK +++Q IK+ + H DR
Sbjct: 116 GSDFDC----ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHP----TDR 167
Query: 171 LVTLTGTLDEQMRALELILLKLSEDTLYSQTMTV-P------YTYAG--VFFSGFHGMPY 221
+V + G D + +++IL +SE + + P Y Y G + F G P
Sbjct: 168 VVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPV 227
Query: 222 G 222
G
Sbjct: 228 G 228
Score = 103 (41.3 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
Identities = 24/90 (26%), Positives = 45/90 (50%)
Query: 244 GGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTS 303
GGR + + + ++ + G ++G+GGR I ++ SGA IK+ + G+
Sbjct: 351 GGRGSYGDLGGPIITTQVTISKDLAGSIIGKGGRRIKQVRHESGASIKIDEP---LEGSE 407
Query: 304 ERKVTISGPQRSIRTAESMIMQKVAYASDR 333
+R +TI+G Q I+ A ++ V S +
Sbjct: 408 DRVITITGTQDQIQNAPYLLQNSVKQYSGK 437
>UNIPROTKB|F1NVW3 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0044430 "cytoskeletal part" evidence=IEA] [GO:0048027 "mRNA
5'-UTR binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171
GO:GO:0044430 OMA:KQQEQKH EMBL:AADN02024285 EMBL:AADN02024286
IPI:IPI00581668 Ensembl:ENSGALT00000022629 Uniprot:F1NVW3
Length = 573
Score = 222 (83.2 bits), Expect = 4.5e-16, P = 4.5e-16
Identities = 81/333 (24%), Positives = 150/333 (45%)
Query: 15 HGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSH 74
H R SS P + +R LV GA+IGK G TI + Q+ +++ + R
Sbjct: 147 HASREQGSSPGGSSQPKQLDFPLRMLVPTQFVGAIIGKEGLTIKNLTKQTQSKVDIHRKE 206
Query: 75 EFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCG 134
G ++ I I T + A +++D + E A+++ L+++ NS G
Sbjct: 207 N--AGAAEKPITIHATPEGCSEACRMILDIMQKEADETKSAEEI----PLKILAHNSLVG 260
Query: 135 SIIGKAGATIKSFMDDSQAVIKISRL-DHSYYGLNDRLVTLTGTLDEQMRALELILLKLS 193
+IGK G +K D+ I IS L D + Y +R +T+ G+ + A I+ KL
Sbjct: 261 RLIGKEGRNLKKIEQDTGTKITISPLQDLTIYN-PERTITVKGSTEACSNAEVEIMKKLR 319
Query: 194 E----D--TLYSQTMTVP---YTYAGVFFSGFHGMPY--GXXXXXXXXXXH---NTAAH- 238
E D + Q +P + G+F +G +P G H +++A+
Sbjct: 320 EAYENDIVAVNQQANLIPGLNLSALGIFSTGLSMLPSSAGARGAAAAAPYHPFASSSAYL 379
Query: 239 ---YGPN-MGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSD 294
YG + +G Q+ ++ + + + + +G ++G+ G++I ++++ +GA IK++
Sbjct: 380 SGLYGASPVGAFPHQHPLPEQ-EVVNLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAP 438
Query: 295 RGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
+ER V I+GP + A+ I K+
Sbjct: 439 AEG--PDATERMVIITGPPEAQFKAQGRIFGKL 469
Score = 123 (48.4 bits), Expect = 0.00013, P = 0.00013
Identities = 35/145 (24%), Positives = 68/145 (46%)
Query: 16 GKRSTAPVKSLSSD-PTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSH 74
G +PV + P + + + GA+IGK G I +GA I+++ +
Sbjct: 381 GLYGASPVGAFPHQHPLPEQEVVNLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAE 440
Query: 75 EFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCG 134
P T+R+++I+G + +A + KL E + + ++V K + + VP+ + G
Sbjct: 441 G--PDATERMVIITGPPEAQFKAQGRIFGKLKEE-NFFNPKEEV--KLEAHIKVPSFAAG 495
Query: 135 SIIGKAGATIKSFMDDSQAVIKISR 159
+IGK G T+ + + A + + R
Sbjct: 496 RVIGKGGKTVNELQNLTSAEVIVPR 520
>POMBASE|SPCC757.09c [details] [associations]
symbol:rnc1 "RNA-binding protein that suppresses
calcineurin deletion Rnc1" species:4896 "Schizosaccharomyces pombe"
[GO:0003729 "mRNA binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0043409 "negative regulation of MAPK cascade" evidence=IGI]
[GO:0048255 "mRNA stabilization" evidence=IMP] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
PomBase:SPCC757.09c GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003729 GO:GO:0048255 GO:GO:0043409
HSSP:Q91WJ8 OrthoDB:EOG4Z65XM eggNOG:NOG315872 PIR:T41600
RefSeq:NP_587684.1 ProteinModelPortal:O74919 STRING:O74919
PRIDE:O74919 EnsemblFungi:SPCC757.09c.1 GeneID:2539434
KEGG:spo:SPCC757.09c HOGENOM:HOG000184255 OMA:NCESIAY
NextBio:20800596 Uniprot:O74919
Length = 398
Score = 169 (64.5 bits), Expect = 4.8e-16, Sum P(2) = 4.8e-16
Identities = 51/176 (28%), Positives = 86/176 (48%)
Query: 20 TAPVKSLSSDPT-EKPTY------IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSR 72
T+ V +S+ P + TY +R L+S AG +IGK G + + +S + + +++
Sbjct: 72 TSQVPPISAKPPMDDATYATQQLTLRALLSTREAGIIIGKAGKNVAELRSTTNVKAGVTK 131
Query: 73 SHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLL-TELHAEDQADDVGTKTKLRLIVPNS 131
+ P DR++ ISG ++ ++RA +ID + + D T KLRL++ +S
Sbjct: 132 A---VPNVHDRVLTISGPLENVVRAYRFIIDIFAKNSTNPDGTPSDANTPRKLRLLIAHS 188
Query: 132 SCGSIIGKAGATIKSFMDDSQAVIKISR--LDHSYYGLNDRLVTLTGTLDEQMRAL 185
GSIIG+ G IK D + S+ L S +R V + GT+D A+
Sbjct: 189 LMGSIIGRNGLRIKLIQDKCSCRMIASKDMLPQS----TERTVEIHGTVDNLHAAI 240
Score = 95 (38.5 bits), Expect = 4.8e-16, Sum P(2) = 4.8e-16
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 261 IGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAE 320
I + + +G ++GRGG I EI + SG++I ++ T ER TI+G A
Sbjct: 325 ISIPADMVGCIIGRGGSKISEIRRTSGSKISIAKEPH--DETGERMFTITGTHEENEKAL 382
Query: 321 SMIMQKVAYASDR 333
++ Q++ DR
Sbjct: 383 FLLYQQLEMEKDR 395
Score = 77 (32.2 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 109 LHAEDQADDVGTKTK---LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYY 165
+ A+ DD T+ LR ++ G IIGKAG + + +++ +
Sbjct: 78 ISAKPPMDDATYATQQLTLRALLSTREAGIIIGKAGKNVAELRSTTNVKAGVTK---AVP 134
Query: 166 GLNDRLVTLTGTLDEQMRALELIL 189
++DR++T++G L+ +RA I+
Sbjct: 135 NVHDRVLTISGPLENVVRAYRFII 158
>UNIPROTKB|Q5ZIQ3 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:NOG285495
HOGENOM:HOG000019764 HOVERGEN:HBG051916 KO:K12886 OrthoDB:EOG49KFRD
InterPro:IPR012987 Pfam:PF08067 EMBL:AJ720731 IPI:IPI00593692
RefSeq:NP_001026556.1 UniGene:Gga.28787 HSSP:P61978
ProteinModelPortal:Q5ZIQ3 SMR:Q5ZIQ3 STRING:Q5ZIQ3 PRIDE:Q5ZIQ3
GeneID:426516 KEGG:gga:426516 CTD:380255 InParanoid:Q5ZIQ3
NextBio:20828064 Uniprot:Q5ZIQ3
Length = 427
Score = 163 (62.4 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 72/270 (26%), Positives = 113/270 (41%)
Query: 1 METNESSYV-PSPDVHGKRSTAPVKSLS----SDPTEKPTYIRFLVSNPLAGAVIGKGGS 55
MET + + + +GKR ++ S T++ +R L+ + AGAVIGKGG
Sbjct: 1 METEQQEETFTNTETNGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGK 60
Query: 56 TINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQA 115
I ++ A + + S P +RI+ IS + I + +I L H +
Sbjct: 61 NIKALRTDYNASVSVPDSSG--P---ERILSISADTETIGEILKKIIPTLEEYQHYKGSD 115
Query: 116 DDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISR--LDHSYYGLNDRLVT 173
D +LRL++ S G IIG GA IK +++Q IK+ + HS DR+V
Sbjct: 116 FDC----ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHS----TDRVVL 167
Query: 174 LTGTLDEQMRALELILLKLSEDTLYSQTMTV-P------YTYAG--VFFSGFHGMPYGXX 224
+ G D + +++IL +SE + + P Y Y G + F G P G
Sbjct: 168 IGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFP 227
Query: 225 XXXXXXXXHNTAAHYGPNMGGRKFQNNKDD 254
PN GGR ++ D
Sbjct: 228 MRGRGGFDRMP-----PNRGGRPMPPSRRD 252
Score = 100 (40.3 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 24/90 (26%), Positives = 45/90 (50%)
Query: 244 GGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTS 303
GGR + + + + + G ++G+GG+ I +I SGA IK+ + G+
Sbjct: 339 GGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSE 395
Query: 304 ERKVTISGPQRSIRTAESMIMQKVAYASDR 333
+R +TI+G Q I+ A+ ++ V S +
Sbjct: 396 DRIITITGTQDQIQNAQYLLQNSVKQYSGK 425
>UNIPROTKB|F1NWN2 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00530000063171 EMBL:AADN02024285
EMBL:AADN02024286 IPI:IPI00599184 Ensembl:ENSGALT00000010541
Uniprot:F1NWN2
Length = 551
Score = 216 (81.1 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 81/323 (25%), Positives = 140/323 (43%)
Query: 15 HGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSH 74
H R SS P + +R LV GA+IGK G TI + Q+ +++ + R
Sbjct: 147 HASREQGSSPGGSSQPKQLDFPLRMLVPTQFVGAIIGKEGLTIKNLTKQTQSKVDIHRKE 206
Query: 75 EFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCG 134
G ++ I I T + A +++D + E A+++ L+++ NS G
Sbjct: 207 N--AGAAEKPITIHATPEGCSEACRMILDIMQKEADETKSAEEI----PLKILAHNSLVG 260
Query: 135 SIIGKAGATIKSFMDDSQAVIKISRL-DHSYYGLNDRLVTLTGTLDEQMRALELILLKLS 193
+IGK G +K D+ I IS L D + Y +R +T+ G+ + A I+ KL
Sbjct: 261 RLIGKEGRNLKKIEQDTGTKITISPLQDLTIYN-PERTITVKGSTEACSNAEVEIMKKLR 319
Query: 194 E----D--TLYSQTMTVP---YTYAGVFFSGFHGMPYGXXXXXXXXXXHNTAAHYGPNMG 244
E D + Q +P + G+F +G +P AA Y P
Sbjct: 320 EAYENDIVAVNQQANLIPGLNLSALGIFSTGLSMLPSSAGARGAAA-----AAPYHP--- 371
Query: 245 GRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSE 304
F + +L I + +G ++G+ G++I ++++ +GA IK++ +E
Sbjct: 372 ---FAQLPEQEVVNLFIPT--QAVGAIIGKKGQHIKQLARFAGASIKIAPAEG--PDATE 424
Query: 305 RKVTISGPQRSIRTAESMIMQKV 327
R V I+GP + A+ I K+
Sbjct: 425 RMVIITGPPEAQFKAQGRIFGKL 447
Score = 129 (50.5 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 38/154 (24%), Positives = 73/154 (47%)
Query: 7 SYVPSP-DVHGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSG 65
S +PS G + AP + P ++ + + GA+IGK G I +G
Sbjct: 352 SMLPSSAGARGAAAAAPYHPFAQLPEQE--VVNLFIPTQAVGAIIGKKGQHIKQLARFAG 409
Query: 66 ARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLR 125
A I+++ + P T+R+++I+G + +A + KL E + + ++V K +
Sbjct: 410 ASIKIAPAEG--PDATERMVIITGPPEAQFKAQGRIFGKLKEE-NFFNPKEEV--KLEAH 464
Query: 126 LIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISR 159
+ VP+ + G +IGK G T+ + + A + + R
Sbjct: 465 IKVPSFAAGRVIGKGGKTVNELQNLTSAEVIVPR 498
>UNIPROTKB|G4N5A5 [details] [associations]
symbol:MGG_16887 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CM001233 GO:GO:0003723
RefSeq:XP_003712769.1 ProteinModelPortal:G4N5A5
EnsemblFungi:MGG_16887T0 GeneID:12985187 KEGG:mgr:MGG_16887
Uniprot:G4N5A5
Length = 370
Score = 161 (61.7 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 68/253 (26%), Positives = 108/253 (42%)
Query: 22 PVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTT 81
P + + +R +VS+ AG +IGKGG + D + ++G + +S+ + G
Sbjct: 33 PAPKTDEEYAQAQLTVRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQ---GVH 89
Query: 82 DRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDV---GTKTKLRLIVPNSSCGSIIG 138
DR++ I+G + I +A +V LL + V GT ++L++ ++ G+IIG
Sbjct: 90 DRVLTITGGCEGISKAYAVVARALLEGAPSMGMGGVVSNNGTHP-IKLLISHNQMGTIIG 148
Query: 139 KAGATIKSFMDDS--QAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSED- 195
+ G IK D S + V + L S +R+V + GT + RA+ I L +D
Sbjct: 149 RQGLKIKHIQDVSGVRMVAQKEMLPQS----TERVVEVQGTPEGIQRAVWEICKCLIDDW 204
Query: 196 ------TLYSQTM-TVPYTYAGVFFSGFHGMPYGXXXXXXXXXXHNTAAHYGP---NMGG 245
LY+ + T P AG G G YG T G N GG
Sbjct: 205 QRGTGTVLYNPVVRTQP---AGATQMGSSGAGYGTSNRGDYSSSRVTRTGNGADFSNGGG 261
Query: 246 RKFQNNKD-DRTN 257
R + D D N
Sbjct: 262 RSYNRRSDSDAAN 274
Score = 95 (38.5 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 29/92 (31%), Positives = 49/92 (53%)
Query: 236 AAHYGPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDR 295
AA+ GP +N ++ +T +++I AD +G ++GR G I EI + SGARI ++
Sbjct: 272 AANRGPPTHD---ENGEEIQTQNISIP-ADM-VGCIIGRAGSKISEIRKTSGARISIAKA 326
Query: 296 GDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
T ER TI G ++ TA ++ + +
Sbjct: 327 PH--DETGERMFTIMGSAKANETALFLLYENL 356
>UNIPROTKB|H9L0I0 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 EMBL:AADN02078253 EMBL:AADN02078254 EMBL:AADN02078255
Ensembl:ENSGALT00000023210 Uniprot:H9L0I0
Length = 426
Score = 157 (60.3 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 71/270 (26%), Positives = 112/270 (41%)
Query: 1 METNESSYV-PSPDVHGKRSTAPVKSLS----SDPTEKPTYIRFLVSNPLAGAVIGKGGS 55
MET + + + +GKR ++ S T++ +R L+ + AGAVIGKGG
Sbjct: 1 METEQQEETFTNTETNGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGK 60
Query: 56 TINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQA 115
I ++ A + + S P +RI+ IS + I + +I L H +
Sbjct: 61 NIKALRTDYNASVSVPDSSG--P---ERILSISADTETIGEILKKIIPTLEEYQHYKGSD 115
Query: 116 DDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISR--LDHSYYGLNDRLVT 173
D +LRL++ S G IIG GA IK +++Q IK+ + HS DR+V
Sbjct: 116 FDC----ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHS----TDRVVL 167
Query: 174 LTGTLDEQMRALELILLKLSEDTLYSQTMTV-P------YTYAG--VFFSGFHGMPYGXX 224
+ G D + +++IL + E + + P Y Y G + F G P G
Sbjct: 168 IGGKPDRVVECIKIILDLIFESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFP 227
Query: 225 XXXXXXXXHNTAAHYGPNMGGRKFQNNKDD 254
PN GGR ++ D
Sbjct: 228 MRGRGGFDRMP-----PNRGGRPMPPSRRD 252
Score = 102 (41.0 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 23/87 (26%), Positives = 45/87 (51%)
Query: 244 GGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTS 303
GGR + + + + + G ++G+GG+ I +I SGA IK+ + G+
Sbjct: 339 GGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSE 395
Query: 304 ERKVTISGPQRSIRTAESMIMQKVAYA 330
+R +TI+G Q I+ A+ ++ + Y+
Sbjct: 396 DRIITITGTQDQIQNAQYLLQNRQQYS 422
>ZFIN|ZDB-GENE-040426-1923 [details] [associations]
symbol:hnrpkl "heterogeneous nuclear
ribonucleoprotein K, like" species:7955 "Danio rerio" [GO:0003723
"RNA binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-1923 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG051916 InterPro:IPR012987 Pfam:PF08067 EMBL:BC096867
IPI:IPI00493887 UniGene:Dr.47275 ProteinModelPortal:Q4V9J6
SMR:Q4V9J6 STRING:Q4V9J6 InParanoid:Q4V9J6 NextBio:20817897
ArrayExpress:Q4V9J6 Uniprot:Q4V9J6
Length = 431
Score = 155 (59.6 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
Identities = 58/223 (26%), Positives = 101/223 (45%)
Query: 2 ETNESSYVPSPDVHGKRSTAPVKSLS----SDPTEKPTYIRFLVSNPLAGAVIGKGGSTI 57
+ +E + + D +GKR + S T++ +R L+ + AGAVIGKGG I
Sbjct: 7 QQDEDTTFSNTDTNGKRPAEDMDEEQAFKRSRNTDEMVELRVLLRSKNAGAVIGKGGKNI 66
Query: 58 NDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADD 117
++ A + + S P +RI+ +S ID I ++ K++ L
Sbjct: 67 KALRTDYNASVSVPDSSG--P---ERILSVSADIDTIGE----ILLKIIPTLEEYQHYSG 117
Query: 118 VGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISR--LDHSYYGLNDRLVTLT 175
+LRL++ S G IIG GA IK +++Q IK+ + HS DR+V +
Sbjct: 118 TDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHS----TDRVVLVG 173
Query: 176 GTLDEQMRALELILLKLSEDTLYSQTMTV-PYTYAGVF-FSGF 216
G + + +++IL ++E + + P Y + + GF
Sbjct: 174 GKPERVVECIKVILELIAEAPIKGRAQPYDPNFYDETYDYGGF 216
Score = 104 (41.7 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
Identities = 25/90 (27%), Positives = 46/90 (51%)
Query: 244 GGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTS 303
GGR ++ + + + + G ++G+GG+ I +I SGA IK+ + G+
Sbjct: 343 GGRGSYSDIGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSE 399
Query: 304 ERKVTISGPQRSIRTAESMIMQKVAYASDR 333
+R +TI+G Q I+ A+ ++ V S R
Sbjct: 400 DRIITITGTQDQIQNAQYLLQNSVKQYSGR 429
Score = 37 (18.1 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 15/57 (26%), Positives = 19/57 (33%)
Query: 240 GPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRG 296
G + + +N DDR N D + G N SG R SD G
Sbjct: 296 GDRFSHQSYHSNMDDRPNDRRGRPGDRYESMSGGGYDNNSSWEPFQSGGRGSYSDIG 352
>ZFIN|ZDB-GENE-000308-1 [details] [associations]
symbol:igf2bp3 "insulin-like growth factor 2 mRNA
binding protein 3" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=ISS] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 Pfam:PF13014 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 ZFIN:ZDB-GENE-000308-1
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 HSSP:Q9Y6M1 HOVERGEN:HBG052725
KO:K13197 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG405S0T CTD:10643 OMA:EAQDTKF
EMBL:AF161270 EMBL:BC045873 IPI:IPI00497892 RefSeq:NP_571566.1
UniGene:Dr.8280 ProteinModelPortal:Q9PW80 SMR:Q9PW80 PRIDE:Q9PW80
Ensembl:ENSDART00000010140 GeneID:30967 KEGG:dre:30967
InParanoid:Q9PW80 NextBio:20807119 ArrayExpress:Q9PW80 Bgee:Q9PW80
Uniprot:Q9PW80
Length = 582
Score = 214 (80.4 bits), Expect = 4.7e-15, P = 4.7e-15
Identities = 82/335 (24%), Positives = 148/335 (44%)
Query: 4 NESSYVPSPDVHGKRSTAP-------VKSLSSDPT-EKPTYIRFLVSNPLAGAVIGKGGS 55
+E++ +P V G+R P SL + P + +R LV GA+IGK G+
Sbjct: 156 DETAAADAPAVGGRRGFNPRGPPRQGSPSLGARPKLQSDVPLRLLVPTQFVGAIIGKEGA 215
Query: 56 TINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQA 115
TI + Q+ ++I + R G ++ I + T + A +++ + E A D
Sbjct: 216 TIRNITKQTHSKIDIHRKEN--AGAAEKPITVHSTPEGCSSACRNIMEIMQKE--AIDTK 271
Query: 116 DDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRL-DHSYYGLNDRLVTL 174
+ + L+++ N+ G +IGK G +K D+ I IS L D + Y +R +T+
Sbjct: 272 --ITEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYN-PERTITV 328
Query: 175 TGTLDEQMRALELILLKLSEDTLYSQTMTVPYTYAGVFFSGFHGMPYGXXXXXXXXXXHN 234
GTLD +A E I+ K+ E Y + + + + G + G
Sbjct: 329 KGTLDACAKAEEEIMKKVRES--YENDVAAMHLQSNLI-PGLNLNALGLFPGAASGGISP 385
Query: 235 TAAHYGPNMGGRKFQNNKDDRTNSLTIG--VADEHIGFVVGRGGRNIMEISQISGARIKV 292
+ GP G + + + S T+ + +G ++G+ G++I ++S+ +GA IK+
Sbjct: 386 SVVS-GPPPGAQAGYQSFGAQMESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKI 444
Query: 293 SDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
+ +R V ISGP + A+ I K+
Sbjct: 445 APADGI--DAKQRMVIISGPPEAQFKAQGRIFGKL 477
>UNIPROTKB|H9L011 [details] [associations]
symbol:LOC426023 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AADN02056329 Ensembl:ENSGALT00000021744 OMA:RALENKI
Uniprot:H9L011
Length = 195
Score = 193 (73.0 bits), Expect = 5.0e-15, P = 5.0e-15
Identities = 50/174 (28%), Positives = 91/174 (52%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G ++ + +SGARI +S + +RII ++G + I +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN-----CPERIITLAGPTNAIFK 70
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
A ++IDKL ++ + ++ LRL+VP S CGS+IGK G IK + + A
Sbjct: 71 AFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQ 130
Query: 155 IKIS--RLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPY 206
++++ L +S +R +T+ G + ++ I + + E + +T+PY
Sbjct: 131 VQVAGDMLPNS----TERAITIAGIPQSIIECVKQICVVMLESP--PKGVTIPY 178
>UNIPROTKB|H9L242 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 OMA:INPWANG EMBL:AADN02078253 EMBL:AADN02078254
EMBL:AADN02078255 Ensembl:ENSGALT00000035757 Uniprot:H9L242
Length = 427
Score = 157 (60.3 bits), Expect = 5.7e-15, Sum P(2) = 5.7e-15
Identities = 71/270 (26%), Positives = 112/270 (41%)
Query: 1 METNESSYV-PSPDVHGKRSTAPVKSLS----SDPTEKPTYIRFLVSNPLAGAVIGKGGS 55
MET + + + +GKR ++ S T++ +R L+ + AGAVIGKGG
Sbjct: 1 METEQQEETFTNTETNGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGK 60
Query: 56 TINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQA 115
I ++ A + + S P +RI+ IS + I + +I L H +
Sbjct: 61 NIKALRTDYNASVSVPDSSG--P---ERILSISADTETIGEILKKIIPTLEEYQHYKGSD 115
Query: 116 DDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISR--LDHSYYGLNDRLVT 173
D +LRL++ S G IIG GA IK +++Q IK+ + HS DR+V
Sbjct: 116 FDC----ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHS----TDRVVL 167
Query: 174 LTGTLDEQMRALELILLKLSEDTLYSQTMTV-P------YTYAG--VFFSGFHGMPYGXX 224
+ G D + +++IL + E + + P Y Y G + F G P G
Sbjct: 168 IGGKPDRVVECIKIILDLIFESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFP 227
Query: 225 XXXXXXXXHNTAAHYGPNMGGRKFQNNKDD 254
PN GGR ++ D
Sbjct: 228 MRGRGGFDRMP-----PNRGGRPMPPSRRD 252
Score = 100 (40.3 bits), Expect = 5.7e-15, Sum P(2) = 5.7e-15
Identities = 24/90 (26%), Positives = 45/90 (50%)
Query: 244 GGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTS 303
GGR + + + + + G ++G+GG+ I +I SGA IK+ + G+
Sbjct: 339 GGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSE 395
Query: 304 ERKVTISGPQRSIRTAESMIMQKVAYASDR 333
+R +TI+G Q I+ A+ ++ V S +
Sbjct: 396 DRIITITGTQDQIQNAQYLLQNSVKQYSGK 425
>TAIR|locus:2161413 [details] [associations]
symbol:AT5G46190 "AT5G46190" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AB006698 HSSP:Q96AE4
KO:K13162 EMBL:AY039918 EMBL:AY113859 IPI:IPI00528964
RefSeq:NP_199431.1 UniGene:At.24400 ProteinModelPortal:Q9FNK3
SMR:Q9FNK3 IntAct:Q9FNK3 PRIDE:Q9FNK3 EnsemblPlants:AT5G46190.1
GeneID:834661 KEGG:ath:AT5G46190 TAIR:At5g46190 InParanoid:Q9FNK3
OMA:GCIIGKS PhylomeDB:Q9FNK3 ProtClustDB:CLSN2916231
ArrayExpress:Q9FNK3 Genevestigator:Q9FNK3 Uniprot:Q9FNK3
Length = 644
Score = 161 (61.7 bits), Expect = 5.9e-15, Sum P(2) = 5.9e-15
Identities = 65/212 (30%), Positives = 107/212 (50%)
Query: 4 NESSYVPS-PDVHGKRSTAPVKSLS------------SDPTEKPTYIRFLVSNPLAGAVI 50
N SS++ + P +G+ + PV S S +EK I+ + S+ G VI
Sbjct: 274 NVSSFIGTLPQGYGENAANPVPVFSASALPVVHGFGGSSRSEKLA-IKVICSSSKIGRVI 332
Query: 51 GKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTI--DEILR-AVDLVIDKLLT 107
GKGG TI + SG+ I+++ S D +I ++ T D++ AV+ V+ LL
Sbjct: 333 GKGGLTIKGIRQASGSHIEVNDSRTNHDD--DCVITVTATESPDDLKSMAVEAVL--LLQ 388
Query: 108 ELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHS--YY 165
E D+ +D K K++L+V + G IIGK+G+ I ++A I IS+ +++
Sbjct: 389 E-KINDEDED---KVKMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGNNTPKCA 444
Query: 166 GLNDRLVTLTGTLDEQMRALELILLKLSEDTL 197
ND LV ++G + AL I+L+L +D L
Sbjct: 445 DPNDELVEISGEVSNVRDALIQIVLRLRDDVL 476
Score = 101 (40.6 bits), Expect = 5.9e-15, Sum P(2) = 5.9e-15
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 255 RTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQR 314
++ ++ + + +G V+GRGG N+ I +ISGA I++SD + G R ISG
Sbjct: 572 QSTTMEVRIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKNSHGG---RVALISGTSE 628
Query: 315 SIRTAESM 322
RTAE++
Sbjct: 629 QKRTAENL 636
Score = 98 (39.6 bits), Expect = 5.4e-13, Sum P(3) = 5.4e-13
Identities = 31/108 (28%), Positives = 55/108 (50%)
Query: 94 ILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQA 153
+L+ D ++ L T AE+ D + RL+VP+S C +IGK+G+ IK+ ++A
Sbjct: 124 LLKVHDAIVASLATA--AENTKIDRDDFRECRLLVPSSQCSIVIGKSGSIIKNIRGRTRA 181
Query: 154 VIKISRLD-----HSYYGLNDRLVTLTGTLDEQMRAL---ELILLKLS 193
+K+ D H+ D +V ++G + +AL I+ K+S
Sbjct: 182 NVKVVSKDVSDPSHTCAMDFDNIVMISGETESVKKALFAVSAIMYKVS 229
Score = 90 (36.7 bits), Expect = 5.4e-13, Sum P(3) = 5.4e-13
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 38 RFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRA 97
R L + + G+VIGK G IN + ++ ARI++ + FPG ++R+I I ++ E
Sbjct: 47 RILCPSGVMGSVIGKSGKVINLIRQETRARIKVV---DPFPGCSERVITIFCSVSEKKDI 103
Query: 98 VDLVIDKL 105
VD+ +L
Sbjct: 104 VDIEYSEL 111
Score = 83 (34.3 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 28/111 (25%), Positives = 52/111 (46%)
Query: 38 RFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTT-----DRIIMISGTID 92
R LV + VIGK GS I + + ++ A +++ P T D I+MISG +
Sbjct: 153 RLLVPSSQCSIVIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETE 212
Query: 93 EILRAVDLVIDKLLTELHAEDQA--DDVGTKTKLRLIVPNSSCGSIIGKAG 141
+ +A+ + ++ ++ +Q D + +I+P+ SI +AG
Sbjct: 213 SVKKAL-FAVSAIMYKVSPREQIPLDTTVQEVPASIIIPSDL--SIYPQAG 260
Score = 81 (33.6 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 20/75 (26%), Positives = 43/75 (57%)
Query: 113 DQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLV 172
D DD+ R++ P+ GS+IGK+G I +++A IK+ +D + G ++R++
Sbjct: 37 DNKDDL--VVVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKV--VD-PFPGCSERVI 91
Query: 173 TLTGTLDEQMRALEL 187
T+ ++ E+ +++
Sbjct: 92 TIFCSVSEKKDIVDI 106
Score = 75 (31.5 bits), Expect = 2.5e-10, Sum P(3) = 2.5e-10
Identities = 24/84 (28%), Positives = 43/84 (51%)
Query: 255 RTNSLTIGV--ADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGP 312
R+ L I V + IG V+G+GG I I Q SG+ I+V+D + + +T++
Sbjct: 313 RSEKLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRT--NHDDDCVITVTAT 370
Query: 313 QRSIRTAESMIMQKVAYASDRLMD 336
+ S +SM ++ V +++ D
Sbjct: 371 E-SPDDLKSMAVEAVLLLQEKIND 393
Score = 65 (27.9 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 20/80 (25%), Positives = 42/80 (52%)
Query: 250 NNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDF--FSGTSERKV 307
N++D+ + + V+ + IG ++G+ G I EI + + A I +S + + ++ V
Sbjct: 392 NDEDEDKVKMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGNNTPKCADPNDELV 451
Query: 308 TISGPQRSIRTAESMIMQKV 327
ISG ++R A I+ ++
Sbjct: 452 EISGEVSNVRDALIQIVLRL 471
>WB|WBGene00010908 [details] [associations]
symbol:M88.5 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 EMBL:Z34802 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 PIR:T23837 RefSeq:NP_001022695.1
ProteinModelPortal:Q21605 SMR:Q21605 IntAct:Q21605 STRING:Q21605
PaxDb:Q21605 PRIDE:Q21605 EnsemblMetazoa:M88.5a GeneID:175595
KEGG:cel:CELE_M88.5 UCSC:M88.5a CTD:175595 WormBase:M88.5a
HOGENOM:HOG000021364 InParanoid:Q21605 OMA:FPIHSAS NextBio:888828
ArrayExpress:Q21605 Uniprot:Q21605
Length = 828
Score = 200 (75.5 bits), Expect = 6.8e-15, Sum P(2) = 6.8e-15
Identities = 73/276 (26%), Positives = 122/276 (44%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQ---LSRSHEFFPGTTDRIIMISGTIDE 93
IR +V +IG GSTI D S + R+ LS+ G DRI+ + G ++
Sbjct: 313 IRCVVEGKYHAVIIGPNGSTIKDIASSTRCRVDFVNLSKKERTVLGNNDRILTVHGVAEQ 372
Query: 94 ILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQA 153
+AV ++D + +E +D +VG T LR+ N CG +IGKAG++IK M +
Sbjct: 373 ATKAVARILDVIQSEAVKDDV--NVGADTVLRMRAHNQLCGRLIGKAGSSIKEIMQKTGT 430
Query: 154 VIKISRL-----------DHSYYGLNDRLVTLTG-TLDEQMRALELILLKL-----SEDT 196
I +++ + GL +R + + G +++ ++A LI KL S+
Sbjct: 431 NITVTKYIEPPGGISGLTANELLGLMERTIMVRGPSIEAVVQAEALISAKLKKCYESDSQ 490
Query: 197 LYSQTMTVPYTYAGVFFSGFHGMPYGXXXXXXXXXXHNTAAHYGPNMGGRKFQNNKDDRT 256
L +Q+M P + +P G +A H+ P G
Sbjct: 491 LRAQSMQCPMP--PMMMPPI--LPPGASSSAV------SAPHFIPTPPGVLQIQPGTTNL 540
Query: 257 NSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKV 292
+ + V D IG ++G G+NI I + +GA +K+
Sbjct: 541 RQVRMWVPDSMIGALIGAKGKNIKMIIRDTGASVKI 576
Score = 78 (32.5 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 24/84 (28%), Positives = 43/84 (51%)
Query: 35 TYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSR------------SHEFFPGTTD 82
T +R N L G +IGK GS+I + ++G I +++ ++E G +
Sbjct: 399 TVLRMRAHNQLCGRLIGKAGSSIKEIMQKTGTNITVTKYIEPPGGISGLTANELL-GLME 457
Query: 83 RIIMISG-TIDEILRAVDLVIDKL 105
R IM+ G +I+ +++A L+ KL
Sbjct: 458 RTIMVRGPSIEAVVQAEALISAKL 481
Score = 77 (32.2 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 254 DRTNSLTI----GVADEHIGFVVGRGGRNIMEISQISGARIKVSD 294
DR++ L I V IG ++G+GG+N+ E+ +I+GA +K+ +
Sbjct: 675 DRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPE 719
Score = 58 (25.5 bits), Expect = 6.8e-15, Sum P(2) = 6.8e-15
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 303 SERKVTISGPQRSIRTAESMIMQKVAYASDRL 334
SER VTI+G + A+S + K+A S L
Sbjct: 636 SERMVTINGDDLQLLKAQSYVFSKIAETSSSL 667
Score = 57 (25.1 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 17/87 (19%), Positives = 42/87 (48%)
Query: 108 ELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGL 167
E + +A++ K KL +S C + +G + F++D+ + ++ +
Sbjct: 580 EEKTQREAEEAEKKRKLD--ETDSGCEGVA--SGDHPQEFLEDNATINSSDAIEEKPKPV 635
Query: 168 NDRLVTLTGTLDEQMRALELILLKLSE 194
++R+VT+ G + ++A + K++E
Sbjct: 636 SERMVTINGDDLQLLKAQSYVFSKIAE 662
>WB|WBGene00013347 [details] [associations]
symbol:Y59A8B.10 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 eggNOG:NOG258094
KO:K14944 EMBL:AL132898 GeneID:180183 KEGG:cel:CELE_Y59A8B.10
CTD:180183 HSSP:P51513 RefSeq:NP_001256769.1
ProteinModelPortal:Q9GRY9 SMR:Q9GRY9 DIP:DIP-24651N IntAct:Q9GRY9
MINT:MINT-1109012 STRING:Q9GRY9 PaxDb:Q9GRY9 PRIDE:Q9GRY9
EnsemblMetazoa:Y59A8B.10a UCSC:Y59A8B.10 WormBase:Y59A8B.10a
HOGENOM:HOG000017831 InParanoid:Q9GRY9 OMA:LAKYNIM NextBio:908344
ArrayExpress:Q9GRY9 Uniprot:Q9GRY9
Length = 413
Score = 206 (77.6 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 45/167 (26%), Positives = 91/167 (54%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
I+ L+ + GA+IGKGG + + ++ + R+Q+S++ E +PGT++RI ++ G ++ I+
Sbjct: 44 IKILIPSNAVGAIIGKGGEAMRNLKNDNNCRVQMSKNSETYPGTSERICLVKGRLNNIMA 103
Query: 97 AVDLVIDKL---LTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDS 151
++ + DK+ + D D T ++++++PN+S G +IGK+GA IK +
Sbjct: 104 VIESIQDKIREKCADQGGSDAFDHKNTSRGAEIKIVMPNTSAGMVIGKSGANIKDIREQF 163
Query: 152 QAVIKISRLDHSYYGLN--DRLVTLT-GTLDEQMRALELILLKLSED 195
I++ S +R+VT+ ++A +L K++ D
Sbjct: 164 GCQIQVYPKAGSVEAKTSLERVVTVAHDEASALLQAASRVLEKVASD 210
Score = 114 (45.2 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 20/79 (25%), Positives = 48/79 (60%)
Query: 116 DDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLT 175
++ G +++++P+++ G+IIGK G +++ +D+ +++S+ +Y G ++R+ +
Sbjct: 36 EEGGDHLSIKILIPSNAVGAIIGKGGEAMRNLKNDNNCRVQMSKNSETYPGTSERICLVK 95
Query: 176 GTLDEQMRALELILLKLSE 194
G L+ M +E I K+ E
Sbjct: 96 GRLNNIMAVIESIQDKIRE 114
Score = 93 (37.8 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 244 GGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDR-GDFFSGT 302
G F + R + I + + G V+G+ G NI +I + G +I+V + G + T
Sbjct: 121 GSDAFDHKNTSRGAEIKIVMPNTSAGMVIGKSGANIKDIREQFGCQIQVYPKAGSVEAKT 180
Query: 303 S-ERKVTISGPQRS-IRTAESMIMQKVA 328
S ER VT++ + S + A S +++KVA
Sbjct: 181 SLERVVTVAHDEASALLQAASRVLEKVA 208
>UNIPROTKB|Q9GRY9 [details] [associations]
symbol:Y59A8B.10 "Protein Y59A8B.10, isoform a"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00650000093048 eggNOG:NOG258094 KO:K14944
EMBL:AL132898 GeneID:180183 KEGG:cel:CELE_Y59A8B.10 CTD:180183
HSSP:P51513 RefSeq:NP_001256769.1 ProteinModelPortal:Q9GRY9
SMR:Q9GRY9 DIP:DIP-24651N IntAct:Q9GRY9 MINT:MINT-1109012
STRING:Q9GRY9 PaxDb:Q9GRY9 PRIDE:Q9GRY9 EnsemblMetazoa:Y59A8B.10a
UCSC:Y59A8B.10 WormBase:Y59A8B.10a HOGENOM:HOG000017831
InParanoid:Q9GRY9 OMA:LAKYNIM NextBio:908344 ArrayExpress:Q9GRY9
Uniprot:Q9GRY9
Length = 413
Score = 206 (77.6 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 45/167 (26%), Positives = 91/167 (54%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
I+ L+ + GA+IGKGG + + ++ + R+Q+S++ E +PGT++RI ++ G ++ I+
Sbjct: 44 IKILIPSNAVGAIIGKGGEAMRNLKNDNNCRVQMSKNSETYPGTSERICLVKGRLNNIMA 103
Query: 97 AVDLVIDKL---LTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDS 151
++ + DK+ + D D T ++++++PN+S G +IGK+GA IK +
Sbjct: 104 VIESIQDKIREKCADQGGSDAFDHKNTSRGAEIKIVMPNTSAGMVIGKSGANIKDIREQF 163
Query: 152 QAVIKISRLDHSYYGLN--DRLVTLT-GTLDEQMRALELILLKLSED 195
I++ S +R+VT+ ++A +L K++ D
Sbjct: 164 GCQIQVYPKAGSVEAKTSLERVVTVAHDEASALLQAASRVLEKVASD 210
Score = 114 (45.2 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 20/79 (25%), Positives = 48/79 (60%)
Query: 116 DDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLT 175
++ G +++++P+++ G+IIGK G +++ +D+ +++S+ +Y G ++R+ +
Sbjct: 36 EEGGDHLSIKILIPSNAVGAIIGKGGEAMRNLKNDNNCRVQMSKNSETYPGTSERICLVK 95
Query: 176 GTLDEQMRALELILLKLSE 194
G L+ M +E I K+ E
Sbjct: 96 GRLNNIMAVIESIQDKIRE 114
Score = 93 (37.8 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 244 GGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDR-GDFFSGT 302
G F + R + I + + G V+G+ G NI +I + G +I+V + G + T
Sbjct: 121 GSDAFDHKNTSRGAEIKIVMPNTSAGMVIGKSGANIKDIREQFGCQIQVYPKAGSVEAKT 180
Query: 303 S-ERKVTISGPQRS-IRTAESMIMQKVA 328
S ER VT++ + S + A S +++KVA
Sbjct: 181 SLERVVTVAHDEASALLQAASRVLEKVA 208
>UNIPROTKB|K7GQW0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 Gene3D:3.30.70.330
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000035698 Uniprot:K7GQW0
Length = 477
Score = 167 (63.8 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 54/209 (25%), Positives = 92/209 (44%)
Query: 15 HGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSH 74
H R SS + +R LV GA+IGK G TI + Q+ +R+ + R
Sbjct: 95 HSSREQGHAPGGSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKE 154
Query: 75 EFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCG 134
G ++ + I T + A ++++ + E A+++ L+++ N G
Sbjct: 155 N--SGAAEKPVTIHATPEGTSEACRMILEIMQKEADETKLAEEI----PLKILAHNGLVG 208
Query: 135 SIIGKAGATIKSFMDDSQAVIKISRL-DHSYYGLNDRLVTLTGTLDEQMRALELILLKLS 193
+IGK G +K ++ I IS L D S Y +R +T+ GT++ A I+ KL
Sbjct: 209 RLIGKEGRNLKKIEHETGTKITISSLQDLSIYN-PERTITVKGTVEACANAEIEIMKKLR 267
Query: 194 EDTLYSQTMTVPYTYAGVFFSGFHGMPYG 222
E + M T++G F S + +G
Sbjct: 268 E--AFENDMLAVNTHSGYFSSLYPPHQFG 294
Score = 122 (48.0 bits), Expect = 0.00013, P = 0.00013
Identities = 31/123 (25%), Positives = 63/123 (51%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
+ + GA+IGK G+ I +GA I+++ + P ++R+++I+G + +
Sbjct: 308 VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG--PDVSERMVIITGPPEAQFK 365
Query: 97 AVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIK 156
A + KL E + + ++V + +R VP+S+ G +IGK G T+ + + A +
Sbjct: 366 AQGRIFGKLKEE-NFFNPKEEVKLEAHIR--VPSSTAGRVIGKGGKTVNELQNLTSAEVI 422
Query: 157 ISR 159
+ R
Sbjct: 423 VPR 425
Score = 99 (39.9 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMR 183
+ L +P + G+IIGK GA IK + A IKI+ + +++R+V +TG + Q +
Sbjct: 308 VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGP--DVSERMVIITGPPEAQFK 365
Query: 184 ALELILLKLSEDTLYS 199
A I KL E+ ++
Sbjct: 366 AQGRIFGKLKEENFFN 381
Score = 82 (33.9 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 21/89 (23%), Positives = 44/89 (49%)
Query: 239 YGPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDF 298
Y P+ G ++ + + + + +G ++G+ G +I ++++ +GA IK++
Sbjct: 288 YPPHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG- 346
Query: 299 FSGTSERKVTISGPQRSIRTAESMIMQKV 327
SER V I+GP + A+ I K+
Sbjct: 347 -PDVSERMVIITGPPEAQFKAQGRIFGKL 374
Score = 62 (26.9 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 22/80 (27%), Positives = 36/80 (45%)
Query: 248 FQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKV 307
F N K++ I V G V+G+GG+ + E+ ++ A + V R E V
Sbjct: 379 FFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVP-RDQTPDENEEVIV 437
Query: 308 TISGPQRSIRTAESMIMQKV 327
I G + +TA+ I + V
Sbjct: 438 RIIGHFFASQTAQRKIREIV 457
>ZFIN|ZDB-GENE-040426-1926 [details] [associations]
symbol:hnrnpk "heterogeneous nuclear
ribonucleoprotein K" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-040426-1926 GO:GO:0003723 CTD:3190
GeneTree:ENSGT00550000074311 InterPro:IPR012987 Pfam:PF08067
EMBL:CR376792 EMBL:CU682767 IPI:IPI00865147 RefSeq:NP_998159.2
UniGene:Dr.106469 UniGene:Dr.122250 Ensembl:ENSDART00000097919
GeneID:406267 KEGG:dre:406267 NextBio:20817900 ArrayExpress:F1QWB4
Bgee:F1QWB4 Uniprot:F1QWB4
Length = 429
Score = 148 (57.2 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 58/227 (25%), Positives = 98/227 (43%)
Query: 2 ETNESSYVPSPDVHGKRST------APVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGS 55
+ E + + +GKRS P K S +++ +R L+ + AGAVIGKGG
Sbjct: 6 DPQEEETFSNKESNGKRSADDSEEEKPYKR--SRNSDEMVELRILLQSKNAGAVIGKGGK 63
Query: 56 TINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQA 115
I ++ A + + S P +RI+ +S I + ++ K++ L
Sbjct: 64 NIKALRTDYNATVSVPDSSG--P---ERILSVSADIPTVAE----ILLKIIPTLEEYQHH 114
Query: 116 DDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLT 175
V +LRL++ S GSIIG GA IK D +Q IK+ DR+V +
Sbjct: 115 KGVDFDCELRLLIHQSLAGSIIGLKGAKIKELRDSTQTTIKL--FQECCPQSTDRVVLVG 172
Query: 176 GTLDEQMRALELILLKLSEDTLYSQTMTV-PYTYAGVFFSGFHGMPY 221
G + ++ ++ +L + E + + P Y + G G+ Y
Sbjct: 173 GKAERVVQCIKTMLELIVEAPIKGRAQQYDPNFYDETYDYGGFGVMY 219
Score = 102 (41.0 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 26/90 (28%), Positives = 46/90 (51%)
Query: 244 GGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTS 303
GGR ++ T +TI + G ++G+GG+ I +I SGA IK+ + G+
Sbjct: 343 GGRSSYSDGPVITTQVTI--PKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LQGSE 397
Query: 304 ERKVTISGPQRSIRTAESMIMQKVAYASDR 333
+R +TI+G Q I+ A+ ++ + R
Sbjct: 398 DRIITITGTQDQIQNAQYLLQNSALHLLGR 427
>ZFIN|ZDB-GENE-060503-536 [details] [associations]
symbol:igf2bp2b "insulin-like growth factor 2 mRNA
binding protein 2b" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-060503-536
GO:GO:0003723 EMBL:CR382370 GeneTree:ENSGT00530000063171
EMBL:BX004885 IPI:IPI00919570 PRIDE:F1QN87
Ensembl:ENSDART00000088166 Bgee:F1QN87 Uniprot:F1QN87
Length = 446
Score = 204 (76.9 bits), Expect = 4.4e-14, P = 4.4e-14
Identities = 76/301 (25%), Positives = 140/301 (46%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
+R LV GA+IGK G TI + Q+ +++ + R G T++ I I + + +
Sbjct: 62 LRILVPTQFVGAIIGKEGLTIKNITKQTQSKVDIHRKEN--AGATEKAITIHSSKEGCSQ 119
Query: 97 AVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIK 156
A ++++ + E A D + + L+++ NS G +IGK G +K D+ I
Sbjct: 120 ACRMILE--IMEKEANDTK--IVEEVPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKIT 175
Query: 157 ISRL-DHSYYGLNDRLVTLTGTLDEQMRALELILLKLSE----D--TLYSQTMTVP---Y 206
IS L D + Y +R +++ G ++E +A I+ KL E D ++ QT +
Sbjct: 176 ISALQDLTVYN-QERTISVRGGVEECCKAEGEIMKKLREAHENDVASVNQQTNMMAGLNL 234
Query: 207 TYAGVFFSGFHGMPYGXXXXXXXXXXHNTAAHYGPNMGGRKFQNNKDDRTNSLTIGVADE 266
+ G+F SG +P +T A+Y P + G + + + + +
Sbjct: 235 SALGIFSSGMSVLPPASGLRGSL----STPANYSPLLQGGEQE--------VVYLFIPTP 282
Query: 267 HIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQK 326
+G ++G+ G++I E++ +GA IK++ ER V I+GP + A+ I K
Sbjct: 283 AVGALIGKKGQHIKELAHFAGASIKIAAPES--PDEPERMVIITGPPEAQFKAQGRIYGK 340
Query: 327 V 327
+
Sbjct: 341 L 341
Score = 126 (49.4 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 42/168 (25%), Positives = 79/168 (47%)
Query: 10 PSPDVHGKRST-APVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARI 68
P+ + G ST A L ++ Y+ + P GA+IGK G I + +GA I
Sbjct: 249 PASGLRGSLSTPANYSPLLQGGEQEVVYL--FIPTPAVGALIGKKGQHIKELAHFAGASI 306
Query: 69 QLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIV 128
+++ P +R+++I+G + +A + KL E + ++V K + + V
Sbjct: 307 KIAAPES--PDEPERMVIITGPPEAQFKAQGRIYGKLKEE-NFFTAKEEV--KLEAHIKV 361
Query: 129 PNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTG 176
P+++ G +IGK G T+ + + A + + R D + +D V + G
Sbjct: 362 PSTAAGRVIGKGGKTVNELQNLTSAEVIVPR-DQTPDENDDVFVKIIG 408
>WB|WBGene00017816 [details] [associations]
symbol:F26B1.2b species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0007126 "meiosis" evidence=IMP] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0009792
GO:GO:0006974 GO:GO:0003723 GO:GO:0045132 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 KO:K12886
HSSP:P61978 EMBL:FO080500 OMA:INPWANG PIR:T30168 RefSeq:NP_740869.1
ProteinModelPortal:P91277 SMR:P91277 DIP:DIP-27318N IntAct:P91277
MINT:MINT-1054372 STRING:P91277 PaxDb:P91277 PRIDE:P91277
EnsemblMetazoa:F26B1.2a GeneID:172330 KEGG:cel:CELE_F26B1.2
UCSC:F26B1.2c.3 CTD:172330 WormBase:F26B1.2a InParanoid:P91277
NextBio:875055 ArrayExpress:P91277 Uniprot:P91277
Length = 397
Score = 149 (57.5 bits), Expect = 6.2e-14, Sum P(2) = 6.2e-14
Identities = 52/186 (27%), Positives = 91/186 (48%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
+R LVS+ AGA+IGKGG I +++ A +Q+ S+ T +R+ + T DE +
Sbjct: 52 VRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDSN-----TPERVCTV--TADE--K 102
Query: 97 AVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIK 156
V ++ +L L ED + ++R++V S G++IG+ G+ IK + A +K
Sbjct: 103 TVLNILKDVLPRL--EDNFSE-RDPCEVRMLVHQSHAGALIGRNGSKIKELREKCSARLK 159
Query: 157 ISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLY-SQTMTVP-YTYAGVFFS 214
I G DR++ +G + +E ++ +L E + S T +P + Y S
Sbjct: 160 I--FTGCAPGSTDRVLITSGEQKNVLGIIEEVMKELKEIPIKGSATPYLPAFNYDPSNIS 217
Query: 215 GFHGMP 220
+ G P
Sbjct: 218 DYGGFP 223
Score = 109 (43.4 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 34 PTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDE 93
P +R LV AGA+IG+ GS I + + + AR+++ PG+TDR+++ SG
Sbjct: 124 PCEVRMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTGCA--PGSTDRVLITSGEQKN 181
Query: 94 ILRAVDLVIDKL 105
+L ++ V+ +L
Sbjct: 182 VLGIIEEVMKEL 193
Score = 98 (39.6 bits), Expect = 6.2e-14, Sum P(2) = 6.2e-14
Identities = 25/87 (28%), Positives = 42/87 (48%)
Query: 241 PNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFS 300
PN G + + + + + G ++GRGG I I Q SGA+I + +
Sbjct: 301 PNNAGYGYGPGGGGPVTTAQVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQS----N 356
Query: 301 GTSERKVTISGPQRSIRTAESMIMQKV 327
G ER +TI G ++ I +A+ ++ Q V
Sbjct: 357 GQPERIITIKGTEQQIHSAQYLLQQCV 383
Score = 76 (31.8 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 19/71 (26%), Positives = 39/71 (54%)
Query: 119 GTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTL 178
G T ++ +P+ G+IIG+ G I +S A I + + + G +R++T+ GT
Sbjct: 314 GPVTTAQVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQSN----GQPERIITIKGT- 368
Query: 179 DEQMRALELIL 189
++Q+ + + +L
Sbjct: 369 EQQIHSAQYLL 379
Score = 71 (30.1 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 21/75 (28%), Positives = 40/75 (53%)
Query: 121 KTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDE 180
K ++RL+V + S G+IIGK G IK + A +++ D + +R+ T+T
Sbjct: 49 KFEVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVP--DSN---TPERVCTVTADEKT 103
Query: 181 QMRALELILLKLSED 195
+ L+ +L +L ++
Sbjct: 104 VLNILKDVLPRLEDN 118
>UNIPROTKB|P91277 [details] [associations]
symbol:F26B1.2 "Protein F26B1.2, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0009792 GO:GO:0006974
GO:GO:0003723 GO:GO:0045132 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 KO:K12886
HSSP:P61978 EMBL:FO080500 OMA:INPWANG PIR:T30168 RefSeq:NP_740869.1
ProteinModelPortal:P91277 SMR:P91277 DIP:DIP-27318N IntAct:P91277
MINT:MINT-1054372 STRING:P91277 PaxDb:P91277 PRIDE:P91277
EnsemblMetazoa:F26B1.2a GeneID:172330 KEGG:cel:CELE_F26B1.2
UCSC:F26B1.2c.3 CTD:172330 WormBase:F26B1.2a InParanoid:P91277
NextBio:875055 ArrayExpress:P91277 Uniprot:P91277
Length = 397
Score = 149 (57.5 bits), Expect = 6.2e-14, Sum P(2) = 6.2e-14
Identities = 52/186 (27%), Positives = 91/186 (48%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
+R LVS+ AGA+IGKGG I +++ A +Q+ S+ T +R+ + T DE +
Sbjct: 52 VRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPDSN-----TPERVCTV--TADE--K 102
Query: 97 AVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIK 156
V ++ +L L ED + ++R++V S G++IG+ G+ IK + A +K
Sbjct: 103 TVLNILKDVLPRL--EDNFSE-RDPCEVRMLVHQSHAGALIGRNGSKIKELREKCSARLK 159
Query: 157 ISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLY-SQTMTVP-YTYAGVFFS 214
I G DR++ +G + +E ++ +L E + S T +P + Y S
Sbjct: 160 I--FTGCAPGSTDRVLITSGEQKNVLGIIEEVMKELKEIPIKGSATPYLPAFNYDPSNIS 217
Query: 215 GFHGMP 220
+ G P
Sbjct: 218 DYGGFP 223
Score = 109 (43.4 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 34 PTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDE 93
P +R LV AGA+IG+ GS I + + + AR+++ PG+TDR+++ SG
Sbjct: 124 PCEVRMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTGCA--PGSTDRVLITSGEQKN 181
Query: 94 ILRAVDLVIDKL 105
+L ++ V+ +L
Sbjct: 182 VLGIIEEVMKEL 193
Score = 98 (39.6 bits), Expect = 6.2e-14, Sum P(2) = 6.2e-14
Identities = 25/87 (28%), Positives = 42/87 (48%)
Query: 241 PNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFS 300
PN G + + + + + G ++GRGG I I Q SGA+I + +
Sbjct: 301 PNNAGYGYGPGGGGPVTTAQVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQS----N 356
Query: 301 GTSERKVTISGPQRSIRTAESMIMQKV 327
G ER +TI G ++ I +A+ ++ Q V
Sbjct: 357 GQPERIITIKGTEQQIHSAQYLLQQCV 383
Score = 76 (31.8 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 19/71 (26%), Positives = 39/71 (54%)
Query: 119 GTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTL 178
G T ++ +P+ G+IIG+ G I +S A I + + + G +R++T+ GT
Sbjct: 314 GPVTTAQVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQSN----GQPERIITIKGT- 368
Query: 179 DEQMRALELIL 189
++Q+ + + +L
Sbjct: 369 EQQIHSAQYLL 379
Score = 71 (30.1 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 21/75 (28%), Positives = 40/75 (53%)
Query: 121 KTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDE 180
K ++RL+V + S G+IIGK G IK + A +++ D + +R+ T+T
Sbjct: 49 KFEVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVP--DSN---TPERVCTVTADEKT 103
Query: 181 QMRALELILLKLSED 195
+ L+ +L +L ++
Sbjct: 104 VLNILKDVLPRLEDN 118
>UNIPROTKB|F8W0G4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021465
ProteinModelPortal:F8W0G4 SMR:F8W0G4 PRIDE:F8W0G4
Ensembl:ENST00000551104 ArrayExpress:F8W0G4 Bgee:F8W0G4
Uniprot:F8W0G4
Length = 158
Score = 183 (69.5 bits), Expect = 6.9e-14, P = 6.9e-14
Identities = 45/144 (31%), Positives = 78/144 (54%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G ++ + +SGARI +S + +RII ++G + I +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN-----CPERIITLAGPTNAIFK 70
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
A ++IDKL ++ + ++ LRL+VP S CGS+IGK G IK + + A
Sbjct: 71 AFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQ 130
Query: 155 IKIS--RLDHSYYGLNDRLVTLTG 176
++++ L +S +R +T+ G
Sbjct: 131 VQVAGDMLPNS----TERAITIAG 150
Score = 103 (41.3 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMR 183
+RL++ GSIIGK G ++K ++S A I IS + +R++TL G + +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN-----CPERIITLAGPTNAIFK 70
Query: 184 ALELILLKLSEDTLYSQT 201
A +I+ KL ED S T
Sbjct: 71 AFAMIIDKLEEDISSSMT 88
Score = 95 (38.5 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 21/59 (35%), Positives = 37/59 (62%)
Query: 258 SLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSI 316
+L + V G ++G+GG I EI + +GA+++V+ GD ++ER +TI+G +SI
Sbjct: 99 TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVA--GDMLPNSTERAITIAGIPQSI 155
>MGI|MGI:1890358 [details] [associations]
symbol:Igf2bp2 "insulin-like growth factor 2 mRNA binding
protein 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
MGI:MGI:1890358 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
HOVERGEN:HBG052725 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 CTD:10644 OrthoDB:EOG4FBHSJ ChiTaRS:IGF2BP2
GO:GO:0044430 EMBL:AY531659 EMBL:AK170531 EMBL:CT009567
IPI:IPI00338748 IPI:IPI00761863 RefSeq:NP_898850.2
UniGene:Mm.489442 ProteinModelPortal:Q5SF07 SMR:Q5SF07
STRING:Q5SF07 PhosphoSite:Q5SF07 REPRODUCTION-2DPAGE:Q5SF07
PaxDb:Q5SF07 PRIDE:Q5SF07 Ensembl:ENSMUST00000100052 GeneID:319765
KEGG:mmu:319765 UCSC:uc007yrz.1 UCSC:uc007ysb.1 InParanoid:A6X8Z4
OMA:KQQEQKH NextBio:395368 Bgee:Q5SF07 Genevestigator:Q5SF07
GermOnline:ENSMUSG00000033581 Uniprot:Q5SF07
Length = 592
Score = 163 (62.4 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 60/221 (27%), Positives = 97/221 (43%)
Query: 10 PSPDVHGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQ 69
PSP H R SS + +R LV GA+IGK G TI + Q+ +R+
Sbjct: 163 PSPP-HRAREQGHGPGSSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVD 221
Query: 70 LSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVP 129
+ R G ++ + I T + A ++++ + E A++V L+++
Sbjct: 222 IHRKEN--SGAAEKPVTIHATPEGTSEACRMILEIMQKEADETKLAEEV----PLKILAH 275
Query: 130 NSSCGSIIGKAGATIKSFMDDSQAVIKISRL-DHSYYGLNDRLVTLTGTLDEQMRALELI 188
N G +IGK G +K ++ I IS L D S Y +R +T+ GT++ A I
Sbjct: 276 NGFVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYN-PERTITVRGTIEACANAEIEI 334
Query: 189 LLKLSE----DTLY--SQTMTVP---YTYAGVFFSGFHGMP 220
+ KL E D L Q +P + G+F +G +P
Sbjct: 335 MKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVLP 375
Score = 122 (48.0 bits), Expect = 0.00018, P = 0.00018
Identities = 34/128 (26%), Positives = 68/128 (53%)
Query: 32 EKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTI 91
E+ T F+ + + GA+IGK G+ I +GA I+++ + P ++R+++I+G
Sbjct: 419 EQETVSLFIPTQAV-GAIIGKKGAHIKQLARFAGASIKIAPAEG--PDVSERMVIITGPP 475
Query: 92 DEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDS 151
+ +A + KL E + + ++V + +R VP+S+ G +IGK G T+ + +
Sbjct: 476 EAQFKAQGRIFGKLKEE-NFFNPKEEVKLEAHIR--VPSSTAGRVIGKGGKTVNELQNLT 532
Query: 152 QAVIKISR 159
A + + R
Sbjct: 533 SAEVIVPR 540
Score = 98 (39.6 bits), Expect = 5.8e-05, Sum P(3) = 5.8e-05
Identities = 25/74 (33%), Positives = 41/74 (55%)
Query: 126 LIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRAL 185
L +P + G+IIGK GA IK + A IKI+ + +++R+V +TG + Q +A
Sbjct: 425 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGP--DVSERMVIITGPPEAQFKAQ 482
Query: 186 ELILLKLSEDTLYS 199
I KL E+ ++
Sbjct: 483 GRIFGKLKEENFFN 496
Score = 84 (34.6 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 25/90 (27%), Positives = 45/90 (50%)
Query: 238 HYGPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGD 297
H+GP + + T SL I + +G ++G+ G +I ++++ +GA IK++
Sbjct: 407 HFGPFPHHHSYP---EQETVSLFIPT--QAVGAIIGKKGAHIKQLARFAGASIKIAPAEG 461
Query: 298 FFSGTSERKVTISGPQRSIRTAESMIMQKV 327
SER V I+GP + A+ I K+
Sbjct: 462 --PDVSERMVIITGPPEAQFKAQGRIFGKL 489
Score = 62 (26.9 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 22/80 (27%), Positives = 36/80 (45%)
Query: 248 FQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKV 307
F N K++ I V G V+G+GG+ + E+ ++ A + V R E V
Sbjct: 494 FFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVP-RDQTPDENEEVIV 552
Query: 308 TISGPQRSIRTAESMIMQKV 327
I G + +TA+ I + V
Sbjct: 553 RIIGHFFASQTAQRKIREIV 572
Score = 48 (22.0 bits), Expect = 5.8e-05, Sum P(3) = 5.8e-05
Identities = 24/99 (24%), Positives = 44/99 (44%)
Query: 44 PLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTD---RIIMISGTIDEILRA--V 98
PLAG V+ K G D+ Q+ A R+ E G + +I+ + ++ + LR+ +
Sbjct: 29 PLAGQVLLKSGYAFVDYPDQNWA----IRAIETLSGKVELHGKIMEVDYSVSKKLRSRRI 84
Query: 99 DL----------VIDKLLTELHAEDQADDVGTKTKLRLI 127
+ V+D LL E + + V T T+ ++
Sbjct: 85 QIRNIPPHLQWEVLDGLLAEYGTVENVEQVNTDTETAVV 123
>RGD|1305614 [details] [associations]
symbol:Igf2bp2 "insulin-like growth factor 2 mRNA binding
protein 2" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0005856
"cytoskeleton" evidence=ISO] [GO:0044430 "cytoskeletal part"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 RGD:1305614
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 EMBL:CH473999
GeneTree:ENSGT00530000063171 CTD:10644 OrthoDB:EOG4FBHSJ
GO:GO:0044430 IPI:IPI00559516 RefSeq:NP_001257527.1
UniGene:Rn.17318 Ensembl:ENSRNOT00000036958 GeneID:303824
KEGG:rno:303824 UCSC:RGD:1305614 NextBio:652153 Uniprot:D3ZWZ6
Length = 592
Score = 163 (62.4 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 60/221 (27%), Positives = 97/221 (43%)
Query: 10 PSPDVHGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQ 69
PSP H R SS + +R LV GA+IGK G TI + Q+ +R+
Sbjct: 163 PSPP-HRAREQGHGPGSSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVD 221
Query: 70 LSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVP 129
+ R G ++ + I T + A ++++ + E A++V L+++
Sbjct: 222 IHRKEN--SGAAEKPVTIHATPEGTSEACRMILEIMQKEADETKLAEEV----PLKILAH 275
Query: 130 NSSCGSIIGKAGATIKSFMDDSQAVIKISRL-DHSYYGLNDRLVTLTGTLDEQMRALELI 188
N G +IGK G +K ++ I IS L D S Y +R +T+ GT++ A I
Sbjct: 276 NGFVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYN-PERTITVKGTIEACASAEMEI 334
Query: 189 LLKLSE----DTLY--SQTMTVP---YTYAGVFFSGFHGMP 220
+ KL E D L Q +P + G+F +G +P
Sbjct: 335 MKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVLP 375
Score = 122 (48.0 bits), Expect = 0.00018, P = 0.00018
Identities = 34/128 (26%), Positives = 68/128 (53%)
Query: 32 EKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTI 91
E+ T F+ + + GA+IGK G+ I +GA I+++ + P ++R+++I+G
Sbjct: 419 EQETVSLFIPTQAV-GAIIGKKGAHIKQLARFAGASIKIAPAEG--PDVSERMVIITGPP 475
Query: 92 DEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDS 151
+ +A + KL E + + ++V + +R VP+S+ G +IGK G T+ + +
Sbjct: 476 EAQFKAQGRIFGKLKEE-NFFNPKEEVKLEAHIR--VPSSTAGRVIGKGGKTVNELQNLT 532
Query: 152 QAVIKISR 159
A + + R
Sbjct: 533 SAEVIVPR 540
Score = 98 (39.6 bits), Expect = 5.8e-05, Sum P(3) = 5.8e-05
Identities = 25/74 (33%), Positives = 41/74 (55%)
Query: 126 LIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRAL 185
L +P + G+IIGK GA IK + A IKI+ + +++R+V +TG + Q +A
Sbjct: 425 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGP--DVSERMVIITGPPEAQFKAQ 482
Query: 186 ELILLKLSEDTLYS 199
I KL E+ ++
Sbjct: 483 GRIFGKLKEENFFN 496
Score = 84 (34.6 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 25/90 (27%), Positives = 45/90 (50%)
Query: 238 HYGPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGD 297
H+GP + + T SL I + +G ++G+ G +I ++++ +GA IK++
Sbjct: 407 HFGPFPHHHSYP---EQETVSLFIPT--QAVGAIIGKKGAHIKQLARFAGASIKIAPAEG 461
Query: 298 FFSGTSERKVTISGPQRSIRTAESMIMQKV 327
SER V I+GP + A+ I K+
Sbjct: 462 --PDVSERMVIITGPPEAQFKAQGRIFGKL 489
Score = 62 (26.9 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 22/80 (27%), Positives = 36/80 (45%)
Query: 248 FQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKV 307
F N K++ I V G V+G+GG+ + E+ ++ A + V R E V
Sbjct: 494 FFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVP-RDQTPDENEEVIV 552
Query: 308 TISGPQRSIRTAESMIMQKV 327
I G + +TA+ I + V
Sbjct: 553 RIIGHFFASQTAQRKIREIV 572
Score = 48 (22.0 bits), Expect = 5.8e-05, Sum P(3) = 5.8e-05
Identities = 24/99 (24%), Positives = 43/99 (43%)
Query: 44 PLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTD---RIIMISGTIDEILRAVDL 100
PLAG V+ K G D+ Q+ A R+ E G + +I+ + ++ + LR+ +
Sbjct: 29 PLAGQVLLKSGYAFVDYPDQNWA----IRAIETLSGKVELHGKIMEVDYSVSKKLRSRKI 84
Query: 101 ------------VIDKLLTELHAEDQADDVGTKTKLRLI 127
V+D LL E + + V T T+ ++
Sbjct: 85 QIRNIPPHLQWEVLDGLLAEYGTVENVEQVNTDTETAVV 123
>UNIPROTKB|B4DLC0 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HOVERGEN:HBG053520 HGNC:HGNC:8648 ChiTaRS:PCBP2
EMBL:AK296930 IPI:IPI01009186 SMR:B4DLC0 STRING:B4DLC0
Ensembl:ENST00000541275 UCSC:uc010soh.1 Uniprot:B4DLC0
Length = 301
Score = 193 (73.0 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 50/174 (28%), Positives = 91/174 (52%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G ++ + +SGARI +S + +RII ++G + I +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN-----CPERIITLAGPTNAIFK 70
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
A ++IDKL ++ + ++ LRL+VP S CGS+IGK G IK + + A
Sbjct: 71 AFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQ 130
Query: 155 IKIS--RLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPY 206
++++ L +S +R +T+ G + ++ I + + E + +T+PY
Sbjct: 131 VQVAGDMLPNS----TERAITIAGIPQSIIECVKQICVVMLESP--PKGVTIPY 178
>TAIR|locus:2084908 [details] [associations]
symbol:FLK "AT3G04610" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0009911
"positive regulation of flower development" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 EMBL:CP002686 GO:GO:0003723
GO:GO:0009911 EMBL:AC011437 KO:K13162 HSSP:Q9UNW9 EMBL:AY070475
IPI:IPI00521688 RefSeq:NP_187112.1 UniGene:At.28392
ProteinModelPortal:Q9SR13 SMR:Q9SR13 STRING:Q9SR13 PRIDE:Q9SR13
ProMEX:Q9SR13 EnsemblPlants:AT3G04610.1 GeneID:819619
KEGG:ath:AT3G04610 TAIR:At3g04610 InParanoid:Q9SR13 OMA:LEPQQYE
PhylomeDB:Q9SR13 ProtClustDB:CLSN2914698 Genevestigator:Q9SR13
Uniprot:Q9SR13
Length = 577
Score = 178 (67.7 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 55/166 (33%), Positives = 84/166 (50%)
Query: 35 TYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISG----- 89
T R LV G++IG+ G I ++ ARI++ PGTT+R +M+SG
Sbjct: 187 TVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGP---PGTTERAVMVSGKEEPE 243
Query: 90 -----TIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATI 144
++D +LR ++D L E QA +K RL+VP S GS+IGK G T+
Sbjct: 244 SSLPPSMDGLLRVHMRIVDGLDGEA---SQAPPP-SKVSTRLLVPASQAGSLIGKQGGTV 299
Query: 145 KSFMDDSQAVIKI-SRLDHSYYGL-NDRLVTLTGTLDEQMRALELI 188
K+ + S ++++ D + L +DR+V + G RALELI
Sbjct: 300 KAIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELI 345
Score = 65 (27.9 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 271 VVGRGGRNIMEISQISGARIKVSD-RGDFFSGTSERKVTISGPQRSIRTAESMIMQKVAY 329
V+G G NI ++SGA + + + RG G E V +SG ++TA +I +A
Sbjct: 472 VIGTSGSNISYTRRLSGATVTIQETRG--VPG--EMTVEVSGTGSQVQTAVQLIQNFMAE 527
Query: 330 A 330
A
Sbjct: 528 A 528
>UNIPROTKB|O57526 [details] [associations]
symbol:igf2bp3-b "Insulin-like growth factor 2 mRNA-binding
protein 3-B" species:8355 "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005783 GO:GO:0007275 GO:GO:0005634 GO:GO:0006417
GO:GO:0006355 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003730 GO:GO:0051028 HSSP:Q9Y6M1
HOVERGEN:HBG052725 KO:K13197 EMBL:AF042353 EMBL:AF064633
EMBL:BC057700 RefSeq:NP_001079932.1 UniGene:Xl.240
ProteinModelPortal:O57526 SMR:O57526 GeneID:379623 KEGG:xla:379623
CTD:379623 Xenbase:XB-GENE-6255198 Uniprot:O57526
Length = 593
Score = 200 (75.5 bits), Expect = 2.5e-13, P = 2.5e-13
Identities = 79/321 (24%), Positives = 140/321 (43%)
Query: 18 RSTAPVKSLSSDP-TEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEF 76
R +P + P +E P +R LV GA+IGK G+TI + Q+ ++I + R
Sbjct: 189 RQGSPGAAARPKPQSEVP--LRMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRKEN- 245
Query: 77 FPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSI 136
G ++ I I T + A ++++ + E +++ L+++ N+ G +
Sbjct: 246 -AGAAEKPITIHSTPEGCSAACKIIMEIMQKEAQDTKFTEEI----PLKILAHNNFVGRL 300
Query: 137 IGKAGATIKSFMDDSQAVIKISRL-DHSYYGLNDRLVTLTGTLDEQMRALELILLKLSED 195
IGK G +K D+ I IS L D + Y +R +T+ G+++ +A E ++ K+ E
Sbjct: 301 IGKEGRNLKKIEQDTDTKITISPLQDLTLYN-PERTITVKGSIETCAKAEEEVMKKIRES 359
Query: 196 ------TLYSQTMTVP---YTYAGVFFSGFHGMPYGXXXXXXXXXXHNTAAHYGPNMGGR 246
+ Q +P G+F GMP T+A Y P
Sbjct: 360 YENDIAAMNLQAHLIPGLNLNALGLFPPSSSGMP----PPSAGVSSPTTSASYPP----- 410
Query: 247 KFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERK 306
F + T L I +G ++G+ G++I ++S+ +GA IK++ R
Sbjct: 411 -FGQQPESETVHLFIPALA--VGAIIGKQGQHIKQLSRFAGASIKIAPAEG--PDAKLRM 465
Query: 307 VTISGPQRSIRTAESMIMQKV 327
V I+GP + A+ I K+
Sbjct: 466 VIITGPPEAQFKAQGRIYGKL 486
>ZFIN|ZDB-GENE-050706-149 [details] [associations]
symbol:zgc:110045 "zgc:110045" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-050706-149
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CR759794
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
OrthoDB:EOG46WZ8K EMBL:BC098540 IPI:IPI00629204
RefSeq:NP_001035073.1 UniGene:Dr.87947 SMR:Q4KMJ2
Ensembl:ENSDART00000079745 GeneID:664755 KEGG:dre:664755
OMA:QSCARIT NextBio:20902333 Uniprot:Q4KMJ2
Length = 222
Score = 178 (67.7 bits), Expect = 2.6e-13, P = 2.6e-13
Identities = 51/174 (29%), Positives = 89/174 (51%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G T+ + +SGARI +S + +RI+ I+G + I +
Sbjct: 19 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISDG-----SSPERIVTITGASEVIFK 73
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
A ++ +K ++ A V ++ LRL+ P S CGS+IGK G+ IK + + A
Sbjct: 74 AFAMIAEKFEEDILASMINSTVTSRPPVTLRLVFPASQCGSLIGKGGSKIKEIRESTGAQ 133
Query: 155 IKISR--LDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPY 206
++++ L S +R VT++GT + ++ I + E + T+PY
Sbjct: 134 VQVAGDLLPDS----TERAVTISGTPHAITQCVKHICTVMLESP--PKGATIPY 181
>ASPGD|ASPL0000075803 [details] [associations]
symbol:AN4546 species:162425 "Emericella nidulans"
[GO:0005829 "cytosol" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0043409 "negative regulation of MAPK cascade"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:BN001303 EMBL:AACD01000078
OrthoDB:EOG4Z65XM eggNOG:NOG315872 HOGENOM:HOG000184255
RefSeq:XP_662150.1 ProteinModelPortal:Q5B4I4
EnsemblFungi:CADANIAT00005892 GeneID:2872347 KEGG:ani:AN4546.2
OMA:AQANEKA Uniprot:Q5B4I4
Length = 542
Score = 199 (75.1 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 79/314 (25%), Positives = 139/314 (44%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
+R +VS+ AG +IGK G + D + ++G + +S+ PG DR++ ++G + R
Sbjct: 229 LRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSK---VVPGVHDRVLTVTGALSGTAR 285
Query: 97 AVDLVIDKLLT---ELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDS-- 151
A LV LL ++ + GT +RL++ ++ G+IIG+ G IK D S
Sbjct: 286 AYALVAKGLLEGAPQMGMGGIVSNNGTHP-IRLLISHNQMGTIIGRQGLKIKHIQDASGV 344
Query: 152 QAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSED-------TLYSQTMTV 204
+ V + L S +R+V + GT + +A+ I L +D LY+ +
Sbjct: 345 RMVAQKEMLPQS----TERIVEVQGTPEGIEKAIWEIGKCLIDDWQRGTGTILYNPAVRS 400
Query: 205 PYTYAGVFFSG-----FHGMPYGXXXXXXXXXXHNTAAHYG----PNMGGRKFQNNKDDR 255
+ +G ++ PY + + YG P+ R + +D
Sbjct: 401 SVGSGSIQHNGGNSDSYNSRPYNRTGNGADFS--DQSGGYGRRSNPDTSNRGYPLVTEDG 458
Query: 256 TNSLT--IGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQ 313
T I + + +G ++GRGG I EI + SGARI ++ T ER TI G
Sbjct: 459 EEIQTQNISIPADMVGCIIGRGGTKITEIRRSSGARISIAKAPH--DETGERMFTIMGSA 516
Query: 314 RSIRTAESMIMQKV 327
++ A ++ + +
Sbjct: 517 QANEKALYLLYENL 530
>UNIPROTKB|O42254 [details] [associations]
symbol:IGF2BP1 "Insulin-like growth factor 2 mRNA-binding
protein 1" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0045182 "translation regulator activity" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0005886 GO:GO:0005634
GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045182
GO:GO:0048027 GO:GO:0003730 GO:GO:0010494 GO:GO:0070937
GO:GO:0070934 HSSP:Q9Y6M1 HOVERGEN:HBG052725 EMBL:AF026527
IPI:IPI00576155 RefSeq:NP_990402.1 UniGene:Gga.567
ProteinModelPortal:O42254 SMR:O42254 Ensembl:ENSGALT00000001975
GeneID:395953 KEGG:gga:395953 CTD:10642 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 InParanoid:O42254
OMA:EQETVHV OrthoDB:EOG405S0T NextBio:20816018 GO:GO:0010610
Uniprot:O42254
Length = 576
Score = 199 (75.1 bits), Expect = 3.1e-13, P = 3.1e-13
Identities = 73/316 (23%), Positives = 142/316 (44%)
Query: 18 RSTAPVKS---LSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSH 74
R +PV + + P + P +R LV GA+IGK G+TI + Q+ ++I + R
Sbjct: 178 RQGSPVTAGAPVKQQPVDIP--LRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKE 235
Query: 75 EFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCG 134
G ++ I I T + A ++++ + E AD+V L+++ N+ G
Sbjct: 236 N--AGAAEKAISIHSTPEGCSAACKMILEIMQKEAKDTKTADEV----PLKILAHNNFVG 289
Query: 135 SIIGKAGATIKSFMDDSQAVIKISRL-DHSYYGLNDRLVTLTGTLDEQMRALELILLKLS 193
+IGK G +K D++ I IS L D + Y +R +T+ G+++ +A + I+ K+
Sbjct: 290 RLIGKEGRNLKKVEQDTETKITISSLQDLTLYN-PERTITVKGSIENCCKAEQEIMKKVR 348
Query: 194 EDTLYSQTMTVPYTYAGVFFSGFHGMPYGXXXXXXXXXXHNTAAHYGPNM--GGRKFQNN 251
E Y + A + H +P + A P+ G + +
Sbjct: 349 E--AYENDV------AAMSLQS-HLIPGLNLAAVGLFPASSNAVPPPPSSVSGAAPYSSF 399
Query: 252 KDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISG 311
++ + + + +G ++G+ G++I ++S+ + A IK++ + R V I+G
Sbjct: 400 MPPEQETVHVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPET--PDSKVRMVVITG 457
Query: 312 PQRSIRTAESMIMQKV 327
P + A+ I K+
Sbjct: 458 PPEAQFKAQGRIYGKL 473
Score = 120 (47.3 bits), Expect = 0.00029, P = 0.00029
Identities = 42/154 (27%), Positives = 72/154 (46%)
Query: 6 SSYVPSPDVHGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSG 65
S+ VP P AP S P E+ T F+ + + GA+IGK G I +
Sbjct: 380 SNAVPPPP-SSVSGAAPYSSFM--PPEQETVHVFIPAQAV-GAIIGKKGQHIKQLSRFAS 435
Query: 66 ARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLR 125
A I+++ P + R+++I+G + +A + KL E + ++V +T +R
Sbjct: 436 ASIKIAPPET--PDSKVRMVVITGPPEAQFKAQGRIYGKLKEE-NFFGPKEEVKLETHIR 492
Query: 126 LIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISR 159
VP S+ G +IGK G T+ + + A + + R
Sbjct: 493 --VPASAAGRVIGKGGKTVNELQNLTAAEVVVPR 524
>UNIPROTKB|Q5ZLP8 [details] [associations]
symbol:IGF2BP3 "Insulin-like growth factor 2 mRNA-binding
protein 3" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 HSSP:Q9Y6M1 HOVERGEN:HBG052725
KO:K13197 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG405S0T EMBL:AJ719686
IPI:IPI00594271 RefSeq:NP_001006359.1 UniGene:Gga.4039
ProteinModelPortal:Q5ZLP8 SMR:Q5ZLP8 PRIDE:Q5ZLP8
Ensembl:ENSGALT00000017840 GeneID:420617 KEGG:gga:420617 CTD:10643
InParanoid:Q5ZLP8 OMA:EAQDTKF NextBio:20823504 Uniprot:Q5ZLP8
Length = 584
Score = 199 (75.1 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 80/325 (24%), Positives = 140/325 (43%)
Query: 16 GKRSTAPVKSLSSDPTEKPTY---IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSR 72
G+R S S+ +KP +R LV GA+IGK G+TI + Q+ ++I + R
Sbjct: 175 GQRGPPRQGSPSATTRQKPQSDVPLRMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHR 234
Query: 73 SHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSS 132
G ++ I I T + A ++++ + E +++ L+++ N+
Sbjct: 235 KEN--AGAAEKPITIHSTPEGCSTACKIIMEIMQKEAQDTKFTEEI----PLKILAHNNF 288
Query: 133 CGSIIGKAGATIKSFMDDSQAVIKISRL-DHSYYGLNDRLVTLTGTLDEQMRALELILLK 191
G +IGK G +K D+ I IS L D + Y +R +T+ G+++ +A E I+ K
Sbjct: 289 VGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYN-PERTITVKGSIETCAKAEEEIMKK 347
Query: 192 LSED------TLYSQTMTVP---YTYAGVFFSGFHGMPYGXXXXXXXXXXHNTAAHYGPN 242
+ E + Q +P G+F G+P AA Y P
Sbjct: 348 IRESYENDIAAMNLQAHLIPGLNLNALGLFPPSSSGIPPPAVSVASAAA----AASYPP- 402
Query: 243 MGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGT 302
F + T L I +G ++G+ G++I ++S+ +GA IK++
Sbjct: 403 -----FGQQPESETVHLFIPALA--VGAIIGKQGQHIKQLSRFAGASIKIAPAEG--PDA 453
Query: 303 SERKVTISGPQRSIRTAESMIMQKV 327
R V I+GP + A+ I K+
Sbjct: 454 KLRMVIITGPPEAQFKAQGRIYGKL 478
>UNIPROTKB|O73932 [details] [associations]
symbol:igf2bp3-a "Insulin-like growth factor 2 mRNA-binding
protein 3-A" species:8355 "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS;IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=IPI] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005783 GO:GO:0007275 GO:GO:0005634 GO:GO:0006417
GO:GO:0006355 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003730 GO:GO:0030529 GO:GO:0051028
EMBL:AF055923 EMBL:AF064634 EMBL:BC170196 EMBL:BC170224
EMBL:BC170477 EMBL:BC170479 RefSeq:NP_001081752.1 UniGene:Xl.319
HSSP:Q9Y6M1 ProteinModelPortal:O73932 SMR:O73932 IntAct:O73932
PRIDE:O73932 GeneID:394293 KEGG:xla:394293 CTD:394293
Xenbase:XB-GENE-864935 HOVERGEN:HBG052725 KO:K13197 Uniprot:O73932
Length = 594
Score = 199 (75.1 bits), Expect = 3.3e-13, P = 3.3e-13
Identities = 80/321 (24%), Positives = 140/321 (43%)
Query: 18 RSTAPVKSLSSDP-TEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEF 76
R +P + P TE P +R LV GA+IGK G+TI + Q+ ++I + R
Sbjct: 190 RQGSPGAAARPKPQTEVP--LRMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRKEN- 246
Query: 77 FPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSI 136
G ++ I I T + A ++++ + E +++ L+++ N+ G +
Sbjct: 247 -AGAAEKPITIHSTPEGCSAACKIIMEIMQKEAQDTKFTEEI----PLKILAHNNFVGRL 301
Query: 137 IGKAGATIKSFMDDSQAVIKISRL-DHSYYGLNDRLVTLTGTLDEQMRALELILLKLSED 195
IGK G +K D+ I IS L D + Y +R +T+ G+++ +A E I+ K+ E
Sbjct: 302 IGKEGRNLKKIEQDTDTKITISPLQDLTLYN-PERTITVKGSIEPCAKAEEEIMKKIRES 360
Query: 196 ------TLYSQTMTVP---YTYAGVFFSGFHGMPYGXXXXXXXXXXHNTAAHYGPNMGGR 246
+ Q +P G+F S GMP ++ Y P
Sbjct: 361 YENDIAAMNLQAHLIPGLNLNALGLFPSSSSGMP----PPSVGVPSPTSSTSYPP----- 411
Query: 247 KFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERK 306
F + T L I +G ++G+ G++I ++S+ +GA IK++ R
Sbjct: 412 -FGQQPESETVHLFIPALA--VGAIIGKQGQHIKQLSRFAGASIKIAPAEG--PDAKLRM 466
Query: 307 VTISGPQRSIRTAESMIMQKV 327
V I+GP + A+ I K+
Sbjct: 467 VIITGPPEAQFKAQGRIYGKL 487
Score = 121 (47.7 bits), Expect = 0.00023, P = 0.00023
Identities = 46/176 (26%), Positives = 84/176 (47%)
Query: 4 NESSYVPSPDVHGKRSTAPVKSLSSDPT-EKPTY--IRFLVSNPLAGAVIGKGGSTINDF 60
+ SS +P P V G S P S S P ++P + + GA+IGK G I
Sbjct: 388 SSSSGMPPPSV-GVPS--PTSSTSYPPFGQQPESETVHLFIPALAVGAIIGKQGQHIKQL 444
Query: 61 QSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGT 120
+GA I+++ + P R+++I+G + +A + KL E + ++V
Sbjct: 445 SRFAGASIKIAPAEG--PDAKLRMVIITGPPEAQFKAQGRIYGKLKEE-NFFGPKEEVKL 501
Query: 121 KTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTG 176
+T ++ VP+ + G +IGK G T+ + + A + + R D + ++ +V +TG
Sbjct: 502 ETHIK--VPSYAAGRVIGKGGKTVNELQNLTSAEVVVPR-DQTPDENDEVVVKITG 554
>UNIPROTKB|Q5RB68 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005856 "cytoskeleton"
evidence=ISS] [GO:0048027 "mRNA 5'-UTR binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 HOVERGEN:HBG052725 CTD:10644
GO:GO:0044430 EMBL:CR858786 RefSeq:NP_001125573.1 UniGene:Pab.13543
ProteinModelPortal:Q5RB68 SMR:Q5RB68 PRIDE:Q5RB68 GeneID:100172487
KEGG:pon:100172487 InParanoid:Q5RB68 Uniprot:Q5RB68
Length = 556
Score = 163 (62.4 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 53/209 (25%), Positives = 92/209 (44%)
Query: 15 HGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSH 74
H R +S + +R LV GA+IGK G TI + Q+ +R+ + R
Sbjct: 174 HSSREQGHAPGGTSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKE 233
Query: 75 EFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCG 134
G ++ + I T + A ++++ + E A+++ L+++ N G
Sbjct: 234 N--SGAAEKPVTIHATPEGTSEACRMILEIMQKEADETKLAEEI----PLKILAHNGLVG 287
Query: 135 SIIGKAGATIKSFMDDSQAVIKISRL-DHSYYGLNDRLVTLTGTLDEQMRALELILLKLS 193
+IGK G +K ++ I IS L D S Y +R +T+ GT++ A I+ KL
Sbjct: 288 RLIGKEGRNLKKIEHETGTKITISSLQDLSIYN-PERTITVKGTVEACASAEIEIMKKLR 346
Query: 194 EDTLYSQTMTVPYTYAGVFFSGFHGMPYG 222
E + M T++G F S + +G
Sbjct: 347 E--AFENDMLAVNTHSGYFSSLYPHHQFG 373
Score = 122 (48.0 bits), Expect = 0.00016, P = 0.00016
Identities = 31/123 (25%), Positives = 63/123 (51%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
+ + GA+IGK G+ I +GA I+++ + P ++R+++I+G + +
Sbjct: 387 VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG--PDVSERMVIITGPPEAQFK 444
Query: 97 AVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIK 156
A + KL E + + ++V + +R VP+S+ G +IGK G T+ + + A +
Sbjct: 445 AQGRIFGKLKEE-NFFNPKEEVKLEAHIR--VPSSTAGRVIGKGGKTVNELQNLTSAEVI 501
Query: 157 ISR 159
+ R
Sbjct: 502 VPR 504
Score = 99 (39.9 bits), Expect = 7.0e-05, Sum P(3) = 7.0e-05
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMR 183
+ L +P + G+IIGK GA IK + A IKI+ + +++R+V +TG + Q +
Sbjct: 387 VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGP--DVSERMVIITGPPEAQFK 444
Query: 184 ALELILLKLSEDTLYS 199
A I KL E+ ++
Sbjct: 445 AQGRIFGKLKEENFFN 460
Score = 80 (33.2 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 18/65 (27%), Positives = 36/65 (55%)
Query: 263 VADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESM 322
+ + +G ++G+ G +I ++++ +GA IK++ SER V I+GP + A+
Sbjct: 391 IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG--PDVSERMVIITGPPEAQFKAQGR 448
Query: 323 IMQKV 327
I K+
Sbjct: 449 IFGKL 453
Score = 62 (26.9 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 22/80 (27%), Positives = 36/80 (45%)
Query: 248 FQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKV 307
F N K++ I V G V+G+GG+ + E+ ++ A + V R E V
Sbjct: 458 FFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVP-RDQTPDENEEVIV 516
Query: 308 TISGPQRSIRTAESMIMQKV 327
I G + +TA+ I + V
Sbjct: 517 RIIGHFFASQTAQRKIREIV 536
Score = 45 (20.9 bits), Expect = 7.0e-05, Sum P(3) = 7.0e-05
Identities = 19/72 (26%), Positives = 33/72 (45%)
Query: 44 PLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTD---RIIMISGTIDEILRAVDL 100
PLAG V+ K G D+ Q+ A R+ E G + +I+ + ++ + LR+ +
Sbjct: 29 PLAGQVLLKSGYAFVDYPDQNWA----IRAIETLSGKVELHGKIMEVDYSVSKKLRSRKI 84
Query: 101 VIDKLLTELHAE 112
I + L E
Sbjct: 85 QIRNIPPHLQWE 96
>ZFIN|ZDB-GENE-070912-44 [details] [associations]
symbol:igf2bp2a "insulin-like growth factor 2 mRNA
binding protein 2a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 ZFIN:ZDB-GENE-070912-44
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CR936497
HOVERGEN:HBG052725 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG4FBHSJ EMBL:CT737147
IPI:IPI00865862 SMR:A9C3V8 Ensembl:ENSDART00000102419
Uniprot:A9C3V8
Length = 606
Score = 163 (62.4 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 55/206 (26%), Positives = 96/206 (46%)
Query: 25 SLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRI 84
SL S + +R LV GA+IGK G TI + Q+ +++ + R G ++
Sbjct: 188 SLGSRQKQPDFPLRMLVPTQFVGAIIGKEGLTIKNITKQTQSKVDIHRKEN--AGAAEKP 245
Query: 85 IMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATI 144
I I T + A +++D + E +D+ L+++ NS G +IGK G +
Sbjct: 246 ITIHSTPEGCSTACHMIMDIMQKEAVDTKVTEDI----PLKILAHNSLVGRLIGKEGRNL 301
Query: 145 KSFMDDSQAVIKISRL-DHSYYGLNDRLVTLTGTLDEQMRALELILLKLSE----DT--L 197
K +D++ I IS L D + Y +R + + G+++ RA I+ KL E D +
Sbjct: 302 KKIEEDTETKITISSLQDLTIYN-PERTIIVKGSIEACCRAEVEIMKKLREAYENDVAAI 360
Query: 198 YSQTMTVP---YTYAGVFFSGFHGMP 220
Q+ +P + G+F +G +P
Sbjct: 361 NQQSNLIPGLSLSALGIFSTGLSVLP 386
Score = 132 (51.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 38/150 (25%), Positives = 70/150 (46%)
Query: 11 SPDVHGKRSTAPVKSLSSDPTEKPTYIRFL-VSNPLAGAVIGKGGSTINDFQSQSGARIQ 69
S + G P +S T + +L + GA+IGK G I +GA I+
Sbjct: 409 SSQLGGLYGVPPASGISHQHTAPEQEVVYLFIPTQAVGAIIGKKGQHIKQLARFAGASIK 468
Query: 70 LSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVP 129
++ + P T R+++I+G + +A + KL E + ++V +T ++ VP
Sbjct: 469 IAPAES--PDVTQRMVIITGPPEAQFKAQGRIFGKLKEE-NFFTAKEEVKLETHIK--VP 523
Query: 130 NSSCGSIIGKAGATIKSFMDDSQAVIKISR 159
+S+ G +IGK G T+ + + A + + R
Sbjct: 524 SSAAGRVIGKGGKTVNELQNLTSAEVIVPR 553
Score = 81 (33.6 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 21/90 (23%), Positives = 47/90 (52%)
Query: 239 YG-PNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGD 297
YG P G Q+ ++ + + + + +G ++G+ G++I ++++ +GA IK++
Sbjct: 416 YGVPPASGISHQHTAPEQ-EVVYLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAES 474
Query: 298 FFSGTSERKVTISGPQRSIRTAESMIMQKV 327
++R V I+GP + A+ I K+
Sbjct: 475 --PDVTQRMVIITGPPEAQFKAQGRIFGKL 502
Score = 61 (26.5 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 261 IGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAE 320
I V G V+G+GG+ + E+ ++ A + V R E V ISG + +TA+
Sbjct: 520 IKVPSSAAGRVIGKGGKTVNELQNLTSAEVIVP-RDQTPDENDEVFVKISGHFFASQTAQ 578
Query: 321 SMIMQ 325
I +
Sbjct: 579 RKIRE 583
>UNIPROTKB|D4A8D6 [details] [associations]
symbol:D4A8D6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 OrthoDB:EOG46WZ8K IPI:IPI00559929
Ensembl:ENSRNOT00000045980 Uniprot:D4A8D6
Length = 330
Score = 146 (56.5 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
Identities = 42/173 (24%), Positives = 81/173 (46%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G+++GK G + + G I + + +RII +G + I +
Sbjct: 16 IRLLMHGKEVGSIMGKKGESARKLCEECGTLINILEEN-----CLERIITFAGQRNAIFK 70
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
A ++IDKL +L + ++ L L+VP+ CGS+IGK G IK +++ A
Sbjct: 71 AFAMIIDKLEGDLSSSIANSTAASRPSVNLCLVVPDCQCGSLIGKGGCKIKEIRENTGAQ 130
Query: 155 IKISRLDHSYYGLNDRLVTLTGTLDEQMRAL-ELILLKLSEDTLYSQTMTVPY 206
++++ H + T+ G + + + ++ L +L + +T+PY
Sbjct: 131 VQVA--GHMLPNSTEWAFTIAGIPQSIIECVKQFCVVMLEIPSLPPKGVTIPY 181
Score = 90 (36.7 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
Identities = 25/88 (28%), Positives = 47/88 (53%)
Query: 241 PNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFS 300
P M G + +T S + V ++ IG ++ G I E+ Q GA+IK+++
Sbjct: 237 PEMKGYCAGLDASAQTTSHELTVPNDLIGCIIRHQGAEINEVCQACGAQIKIANP---ME 293
Query: 301 GTSERKVTISGPQRSIRTAESMIMQKVA 328
G+++ +VTI+G SI A+ +I +++
Sbjct: 294 GSTDWQVTITGSTASISLAQYLISVRLS 321
>UNIPROTKB|F1PDI8 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00530000063171 CTD:10644 OMA:KQQEQKH
EMBL:AAEX03017290 EMBL:AAEX03017291 EMBL:AAEX03017292
RefSeq:XP_535832.3 Ensembl:ENSCAFT00000021148 GeneID:478662
KEGG:cfa:478662 Uniprot:F1PDI8
Length = 531
Score = 158 (60.7 bits), Expect = 6.8e-13, Sum P(2) = 6.8e-13
Identities = 56/216 (25%), Positives = 94/216 (43%)
Query: 15 HGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSH 74
H R SS + +R LV GA+IGK G TI + Q+ +R+ + R
Sbjct: 106 HSSREQGHAPGGSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKE 165
Query: 75 EFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCG 134
G ++ + I T + A ++++ + E A+++ L+++ N G
Sbjct: 166 N--SGAAEKPVTIHATPEGTSEACRMILEIMQKEADETKLAEEI----PLKILAHNGLVG 219
Query: 135 SIIGKAGATIKSFMDDSQAVIKISRL-DHSYYGLNDRLVTLTGTLDEQMRALELILLKLS 193
+IGK G +K ++ I IS L D S Y +R +T+ GT++ A I+ KL
Sbjct: 220 RLIGKEGRNLKKIEHETGTKITISSLQDLSIYN-PERTITVKGTVEACANAEVEIMKKLR 278
Query: 194 E----DTLY--SQTMTVP---YTYAGVFFSGFHGMP 220
E D L Q +P + G+F +G +P
Sbjct: 279 EAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVLP 314
Score = 122 (48.0 bits), Expect = 0.00015, P = 0.00015
Identities = 31/123 (25%), Positives = 63/123 (51%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
+ + GA+IGK G+ I +GA I+++ + P ++R+++I+G + +
Sbjct: 362 VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG--PDVSERMVIITGPPEAQFK 419
Query: 97 AVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIK 156
A + KL E + + ++V + +R VP+S+ G +IGK G T+ + + A +
Sbjct: 420 AQGRIFGKLKEE-NFFNPKEEVKLEAHIR--VPSSTAGRVIGKGGKTVNELQNLTSAEVI 476
Query: 157 ISR 159
+ R
Sbjct: 477 VPR 479
Score = 99 (39.9 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMR 183
+ L +P + G+IIGK GA IK + A IKI+ + +++R+V +TG + Q +
Sbjct: 362 VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGP--DVSERMVIITGPPEAQFK 419
Query: 184 ALELILLKLSEDTLYS 199
A I KL E+ ++
Sbjct: 420 AQGRIFGKLKEENFFN 435
Score = 82 (33.9 bits), Expect = 6.8e-13, Sum P(2) = 6.8e-13
Identities = 21/89 (23%), Positives = 44/89 (49%)
Query: 239 YGPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDF 298
Y P+ G ++ + + + + +G ++G+ G +I ++++ +GA IK++
Sbjct: 342 YPPHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG- 400
Query: 299 FSGTSERKVTISGPQRSIRTAESMIMQKV 327
SER V I+GP + A+ I K+
Sbjct: 401 -PDVSERMVIITGPPEAQFKAQGRIFGKL 428
Score = 62 (26.9 bits), Expect = 8.0e-11, Sum P(2) = 8.0e-11
Identities = 22/80 (27%), Positives = 36/80 (45%)
Query: 248 FQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKV 307
F N K++ I V G V+G+GG+ + E+ ++ A + V R E V
Sbjct: 433 FFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVP-RDQTPDENEEVIV 491
Query: 308 TISGPQRSIRTAESMIMQKV 327
I G + +TA+ I + V
Sbjct: 492 RIIGHFFASQTAQRKIREIV 511
>UNIPROTKB|K7GQ87 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000035397 Uniprot:K7GQ87
Length = 498
Score = 157 (60.3 bits), Expect = 7.3e-13, Sum P(2) = 7.3e-13
Identities = 56/216 (25%), Positives = 94/216 (43%)
Query: 15 HGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSH 74
H R SS + +R LV GA+IGK G TI + Q+ +R+ + R
Sbjct: 73 HSSREQGHAPGGSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKE 132
Query: 75 EFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCG 134
G ++ + I T + A ++++ + E A+++ L+++ N G
Sbjct: 133 N--SGAAEKPVTIHATPEGTSEACRMILEIMQKEADETKLAEEI----PLKILAHNGLVG 186
Query: 135 SIIGKAGATIKSFMDDSQAVIKISRL-DHSYYGLNDRLVTLTGTLDEQMRALELILLKLS 193
+IGK G +K ++ I IS L D S Y +R +T+ GT++ A I+ KL
Sbjct: 187 RLIGKEGRNLKKIEHETGTKITISSLQDLSIYN-PERTITVKGTVEACANAEIEIMKKLR 245
Query: 194 E----DTLY--SQTMTVP---YTYAGVFFSGFHGMP 220
E D L Q +P + G+F +G +P
Sbjct: 246 EAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVLP 281
Score = 122 (48.0 bits), Expect = 0.00014, P = 0.00014
Identities = 31/123 (25%), Positives = 63/123 (51%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
+ + GA+IGK G+ I +GA I+++ + P ++R+++I+G + +
Sbjct: 329 VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG--PDVSERMVIITGPPEAQFK 386
Query: 97 AVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIK 156
A + KL E + + ++V + +R VP+S+ G +IGK G T+ + + A +
Sbjct: 387 AQGRIFGKLKEE-NFFNPKEEVKLEAHIR--VPSSTAGRVIGKGGKTVNELQNLTSAEVI 443
Query: 157 ISR 159
+ R
Sbjct: 444 VPR 446
Score = 99 (39.9 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMR 183
+ L +P + G+IIGK GA IK + A IKI+ + +++R+V +TG + Q +
Sbjct: 329 VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGP--DVSERMVIITGPPEAQFK 386
Query: 184 ALELILLKLSEDTLYS 199
A I KL E+ ++
Sbjct: 387 AQGRIFGKLKEENFFN 402
Score = 82 (33.9 bits), Expect = 7.3e-13, Sum P(2) = 7.3e-13
Identities = 21/89 (23%), Positives = 44/89 (49%)
Query: 239 YGPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDF 298
Y P+ G ++ + + + + +G ++G+ G +I ++++ +GA IK++
Sbjct: 309 YPPHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG- 367
Query: 299 FSGTSERKVTISGPQRSIRTAESMIMQKV 327
SER V I+GP + A+ I K+
Sbjct: 368 -PDVSERMVIITGPPEAQFKAQGRIFGKL 395
Score = 62 (26.9 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 22/80 (27%), Positives = 36/80 (45%)
Query: 248 FQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKV 307
F N K++ I V G V+G+GG+ + E+ ++ A + V R E V
Sbjct: 400 FFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVP-RDQTPDENEEVIV 458
Query: 308 TISGPQRSIRTAESMIMQKV 327
I G + +TA+ I + V
Sbjct: 459 RIIGHFFASQTAQRKIREIV 478
>UNIPROTKB|G3V829 [details] [associations]
symbol:Fubp3 "RCG45587" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307004 GO:GO:0003723 EMBL:CH474001
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
EMBL:AC108321 Ensembl:ENSRNOT00000021871 Uniprot:G3V829
Length = 569
Score = 144 (55.7 bits), Expect = 8.0e-13, Sum P(2) = 8.0e-13
Identities = 42/154 (27%), Positives = 76/154 (49%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGT---IDEIL 95
F V + + G +IG+GG I+ Q++SG +IQ++ P +R +++GT I++
Sbjct: 82 FKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIP---ERPCVLTGTPESIEQAK 138
Query: 96 RAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVI 155
R + ++D+ + D G T L++P S G +IGK G TIK + + V
Sbjct: 139 RLLGQIVDRCRNGPGFHNDID--GNSTIQELLIPASKVGLVIGKGGETIKQ-LQERTGVK 195
Query: 156 KISRLDHSYYGLNDRLVTLTGTLDEQMRALELIL 189
+ D D+ + +TG + +A E++L
Sbjct: 196 MVMIQDGPLPTGADKPLRITGDPFKVQQAREMVL 229
Score = 122 (48.0 bits), Expect = 0.00017, P = 0.00017
Identities = 58/201 (28%), Positives = 85/201 (42%)
Query: 17 KRSTAPVKSLSSDPTEKPTYIRFLVSNP--LAGAVIGKGGSTINDFQSQSGARIQLSRSH 74
++ A + + SD T + VS P + G VIG+ G I Q+ +G RIQ
Sbjct: 234 EKDQADFRGVRSDFTSRAGGGSIEVSVPRFVVGIVIGRNGEMIKKIQNDAGVRIQFKPDD 293
Query: 75 EFFP-------GTTDRIIMISGTIDE-ILRAVDL-VIDKLL-TELHAEDQAD-DVGTKTK 123
P G DR + I+E IL A + ++ L T + D VGT
Sbjct: 294 GISPERAAQVMGPPDRCQHAARIINELILTAQEREILGGLTGTRGRGRGRGDWSVGTPGG 353
Query: 124 LRLI---VPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDE 180
++ I VP CG +IGK G IKS S A +++ R N R+ T+ G +
Sbjct: 354 IQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGAPQQ 413
Query: 181 QMRALELILLKLSEDTLYSQT 201
A LI K+ +L + T
Sbjct: 414 IEVARHLIDEKVGGASLGAPT 434
Score = 114 (45.2 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 42/164 (25%), Positives = 76/164 (46%)
Query: 35 TYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEI 94
T L+ G VIGKGG TI Q ++G ++ + + P D+ + I+G ++
Sbjct: 163 TIQELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPL-PTGADKPLRITGDPFKV 221
Query: 95 LRAVDLVIDKLLTELHAEDQADDVGTKT---------KLRLIVPNSSCGSIIGKAGATIK 145
+A ++V++ ++ E +DQAD G ++ + + VP G +IG+ G IK
Sbjct: 222 QQAREMVLE-IIRE---KDQADFRGVRSDFTSRAGGGSIEVSVPRFVVGIVIGRNGEMIK 277
Query: 146 SFMDDSQAVIKISRLDHSYYGLN-DRLVTLTGTLDEQMRALELI 188
+D+ I+ D G++ +R + G D A +I
Sbjct: 278 KIQNDAGVRIQFKPDD----GISPERAAQVMGPPDRCQHAARII 317
Score = 98 (39.6 bits), Expect = 8.0e-13, Sum P(2) = 8.0e-13
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 259 LTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRT 318
+T V + G V+G+GG NI I+Q SGA +++ + + R TI G + I
Sbjct: 357 ITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGAPQQIEV 416
Query: 319 AESMIMQKVAYAS 331
A +I +KV AS
Sbjct: 417 ARHLIDEKVGGAS 429
Score = 72 (30.4 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 258 SLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIR 317
S+ + V +G V+GR G I +I +G RI+ D S ER + GP +
Sbjct: 255 SIEVSVPRFVVGIVIGRNGEMIKKIQNDAGVRIQFKP-DDGIS--PERAAQVMGPPDRCQ 311
Query: 318 TAESMIMQKVAYASDR 333
A +I + + A +R
Sbjct: 312 HAARIINELILTAQER 327
>RGD|1307004 [details] [associations]
symbol:Fubp3 "far upstream element (FUSE) binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=ISO] [GO:0010628 "positive
regulation of gene expression" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307004 GO:GO:0003723 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 CTD:8939 OrthoDB:EOG4X97H1
EMBL:DQ144645 IPI:IPI00394110 RefSeq:NP_001034426.1
UniGene:Rn.199412 ProteinModelPortal:Q2QC85 SMR:Q2QC85
GeneID:362106 KEGG:rno:362106 UCSC:RGD:1307004 InParanoid:Q2QC85
NextBio:678673 Genevestigator:Q2QC85 Uniprot:Q2QC85
Length = 569
Score = 144 (55.7 bits), Expect = 8.0e-13, Sum P(2) = 8.0e-13
Identities = 42/154 (27%), Positives = 76/154 (49%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGT---IDEIL 95
F V + + G +IG+GG I+ Q++SG +IQ++ P +R +++GT I++
Sbjct: 82 FKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIP---ERPCVLTGTPESIEQAK 138
Query: 96 RAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVI 155
R + ++D+ + D G T L++P S G +IGK G TIK + + V
Sbjct: 139 RLLGQIVDRCRNGPGFHNDID--GNSTIQELLIPASKVGLVIGKGGETIKQ-LQERTGVK 195
Query: 156 KISRLDHSYYGLNDRLVTLTGTLDEQMRALELIL 189
+ D D+ + +TG + +A E++L
Sbjct: 196 MVMIQDGPLPTGADKPLRITGDPFKVQQAREMVL 229
Score = 120 (47.3 bits), Expect = 0.00028, P = 0.00028
Identities = 58/201 (28%), Positives = 85/201 (42%)
Query: 17 KRSTAPVKSLSSDPTEKPTYIRFLVSNP--LAGAVIGKGGSTINDFQSQSGARIQLSRSH 74
++ A + + SD T + VS P + G VIG+ G I Q+ +G RIQ
Sbjct: 234 EKDQADFRGVRSDFTSRAGGGSIEVSVPRFVVGIVIGRNGEMIKKIQNGTGVRIQFKPDD 293
Query: 75 EFFP-------GTTDRIIMISGTIDE-ILRAVDL-VIDKLL-TELHAEDQAD-DVGTKTK 123
P G DR + I+E IL A + ++ L T + D VGT
Sbjct: 294 GISPERAAQVMGPPDRCQHAARIINELILTAQEREILGGLTGTRGRGRGRGDWSVGTPGG 353
Query: 124 LRLI---VPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDE 180
++ I VP CG +IGK G IKS S A +++ R N R+ T+ G +
Sbjct: 354 IQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGAPQQ 413
Query: 181 QMRALELILLKLSEDTLYSQT 201
A LI K+ +L + T
Sbjct: 414 IEVARHLIDEKVGGASLGAPT 434
Score = 107 (42.7 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 41/164 (25%), Positives = 75/164 (45%)
Query: 35 TYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEI 94
T L+ G VIGKGG TI Q ++G ++ + + P D+ + I+G ++
Sbjct: 163 TIQELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPL-PTGADKPLRITGDPFKV 221
Query: 95 LRAVDLVIDKLLTELHAEDQADDVGTKT---------KLRLIVPNSSCGSIIGKAGATIK 145
+A ++V++ ++ E +DQAD G ++ + + VP G +IG+ G IK
Sbjct: 222 QQAREMVLE-IIRE---KDQADFRGVRSDFTSRAGGGSIEVSVPRFVVGIVIGRNGEMIK 277
Query: 146 SFMDDSQAVIKISRLDHSYYGLN-DRLVTLTGTLDEQMRALELI 188
+ + I+ D G++ +R + G D A +I
Sbjct: 278 KIQNGTGVRIQFKPDD----GISPERAAQVMGPPDRCQHAARII 317
Score = 98 (39.6 bits), Expect = 8.0e-13, Sum P(2) = 8.0e-13
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 259 LTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRT 318
+T V + G V+G+GG NI I+Q SGA +++ + + R TI G + I
Sbjct: 357 ITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGAPQQIEV 416
Query: 319 AESMIMQKVAYAS 331
A +I +KV AS
Sbjct: 417 ARHLIDEKVGGAS 429
Score = 71 (30.1 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 258 SLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIR 317
S+ + V +G V+GR G I +I +G RI+ D S ER + GP +
Sbjct: 255 SIEVSVPRFVVGIVIGRNGEMIKKIQNGTGVRIQFKP-DDGIS--PERAAQVMGPPDRCQ 311
Query: 318 TAESMIMQKVAYASDR 333
A +I + + A +R
Sbjct: 312 HAARIINELILTAQER 327
>UNIPROTKB|K7GKD3 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 Gene3D:3.30.70.330
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000033522 Uniprot:K7GKD3
Length = 520
Score = 157 (60.3 bits), Expect = 8.5e-13, Sum P(2) = 8.5e-13
Identities = 56/216 (25%), Positives = 94/216 (43%)
Query: 15 HGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSH 74
H R SS + +R LV GA+IGK G TI + Q+ +R+ + R
Sbjct: 95 HSSREQGHAPGGSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKE 154
Query: 75 EFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCG 134
G ++ + I T + A ++++ + E A+++ L+++ N G
Sbjct: 155 N--SGAAEKPVTIHATPEGTSEACRMILEIMQKEADETKLAEEI----PLKILAHNGLVG 208
Query: 135 SIIGKAGATIKSFMDDSQAVIKISRL-DHSYYGLNDRLVTLTGTLDEQMRALELILLKLS 193
+IGK G +K ++ I IS L D S Y +R +T+ GT++ A I+ KL
Sbjct: 209 RLIGKEGRNLKKIEHETGTKITISSLQDLSIYN-PERTITVKGTVEACANAEIEIMKKLR 267
Query: 194 E----DTLY--SQTMTVP---YTYAGVFFSGFHGMP 220
E D L Q +P + G+F +G +P
Sbjct: 268 EAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVLP 303
Score = 122 (48.0 bits), Expect = 0.00015, P = 0.00015
Identities = 31/123 (25%), Positives = 63/123 (51%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
+ + GA+IGK G+ I +GA I+++ + P ++R+++I+G + +
Sbjct: 351 VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG--PDVSERMVIITGPPEAQFK 408
Query: 97 AVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIK 156
A + KL E + + ++V + +R VP+S+ G +IGK G T+ + + A +
Sbjct: 409 AQGRIFGKLKEE-NFFNPKEEVKLEAHIR--VPSSTAGRVIGKGGKTVNELQNLTSAEVI 465
Query: 157 ISR 159
+ R
Sbjct: 466 VPR 468
Score = 99 (39.9 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMR 183
+ L +P + G+IIGK GA IK + A IKI+ + +++R+V +TG + Q +
Sbjct: 351 VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGP--DVSERMVIITGPPEAQFK 408
Query: 184 ALELILLKLSEDTLYS 199
A I KL E+ ++
Sbjct: 409 AQGRIFGKLKEENFFN 424
Score = 82 (33.9 bits), Expect = 8.5e-13, Sum P(2) = 8.5e-13
Identities = 21/89 (23%), Positives = 44/89 (49%)
Query: 239 YGPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDF 298
Y P+ G ++ + + + + +G ++G+ G +I ++++ +GA IK++
Sbjct: 331 YPPHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG- 389
Query: 299 FSGTSERKVTISGPQRSIRTAESMIMQKV 327
SER V I+GP + A+ I K+
Sbjct: 390 -PDVSERMVIITGPPEAQFKAQGRIFGKL 417
Score = 62 (26.9 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 22/80 (27%), Positives = 36/80 (45%)
Query: 248 FQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKV 307
F N K++ I V G V+G+GG+ + E+ ++ A + V R E V
Sbjct: 422 FFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVP-RDQTPDENEEVIV 480
Query: 308 TISGPQRSIRTAESMIMQKV 327
I G + +TA+ I + V
Sbjct: 481 RIIGHFFASQTAQRKIREIV 500
>UNIPROTKB|F1SFK0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0044430
"cytoskeletal part" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171
GO:GO:0044430 OMA:KQQEQKH EMBL:CU582974 Ensembl:ENSSSCT00000012907
Uniprot:F1SFK0
Length = 524
Score = 157 (60.3 bits), Expect = 8.7e-13, Sum P(2) = 8.7e-13
Identities = 56/216 (25%), Positives = 94/216 (43%)
Query: 15 HGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSH 74
H R SS + +R LV GA+IGK G TI + Q+ +R+ + R
Sbjct: 99 HSSREQGHAPGGSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKE 158
Query: 75 EFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCG 134
G ++ + I T + A ++++ + E A+++ L+++ N G
Sbjct: 159 N--SGAAEKPVTIHATPEGTSEACRMILEIMQKEADETKLAEEI----PLKILAHNGLVG 212
Query: 135 SIIGKAGATIKSFMDDSQAVIKISRL-DHSYYGLNDRLVTLTGTLDEQMRALELILLKLS 193
+IGK G +K ++ I IS L D S Y +R +T+ GT++ A I+ KL
Sbjct: 213 RLIGKEGRNLKKIEHETGTKITISSLQDLSIYN-PERTITVKGTVEACANAEIEIMKKLR 271
Query: 194 E----DTLY--SQTMTVP---YTYAGVFFSGFHGMP 220
E D L Q +P + G+F +G +P
Sbjct: 272 EAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVLP 307
Score = 122 (48.0 bits), Expect = 0.00015, P = 0.00015
Identities = 31/123 (25%), Positives = 63/123 (51%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
+ + GA+IGK G+ I +GA I+++ + P ++R+++I+G + +
Sbjct: 355 VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG--PDVSERMVIITGPPEAQFK 412
Query: 97 AVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIK 156
A + KL E + + ++V + +R VP+S+ G +IGK G T+ + + A +
Sbjct: 413 AQGRIFGKLKEE-NFFNPKEEVKLEAHIR--VPSSTAGRVIGKGGKTVNELQNLTSAEVI 469
Query: 157 ISR 159
+ R
Sbjct: 470 VPR 472
Score = 99 (39.9 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMR 183
+ L +P + G+IIGK GA IK + A IKI+ + +++R+V +TG + Q +
Sbjct: 355 VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGP--DVSERMVIITGPPEAQFK 412
Query: 184 ALELILLKLSEDTLYS 199
A I KL E+ ++
Sbjct: 413 AQGRIFGKLKEENFFN 428
Score = 82 (33.9 bits), Expect = 8.7e-13, Sum P(2) = 8.7e-13
Identities = 21/89 (23%), Positives = 44/89 (49%)
Query: 239 YGPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDF 298
Y P+ G ++ + + + + +G ++G+ G +I ++++ +GA IK++
Sbjct: 335 YPPHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG- 393
Query: 299 FSGTSERKVTISGPQRSIRTAESMIMQKV 327
SER V I+GP + A+ I K+
Sbjct: 394 -PDVSERMVIITGPPEAQFKAQGRIFGKL 421
Score = 62 (26.9 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 22/80 (27%), Positives = 36/80 (45%)
Query: 248 FQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKV 307
F N K++ I V G V+G+GG+ + E+ ++ A + V R E V
Sbjct: 426 FFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVP-RDQTPDENEEVIV 484
Query: 308 TISGPQRSIRTAESMIMQKV 327
I G + +TA+ I + V
Sbjct: 485 RIIGHFFASQTAQRKIREIV 504
>MGI|MGI:1890357 [details] [associations]
symbol:Igf2bp1 "insulin-like growth factor 2 mRNA binding
protein 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006403 "RNA localization"
evidence=ISO] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010610
"regulation of mRNA stability involved in response to stress"
evidence=ISO] [GO:0017148 "negative regulation of translation"
evidence=ISO] [GO:0030425 "dendrite" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0045182 "translation
regulator activity" evidence=ISO] [GO:0048027 "mRNA 5'-UTR binding"
evidence=ISO] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=ISO] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
EMBL:AF061569 MGI:MGI:1890357 GO:GO:0005886 GO:GO:0005634
GO:GO:0017148 GO:GO:0000166 GO:GO:0030425 Gene3D:3.30.70.330
GO:GO:0045182 GO:GO:0048027 GO:GO:0003730 EMBL:AL603682
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 HSSP:Q9Y6M1
HOVERGEN:HBG052725 CTD:10642 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 OMA:EQETVHV
OrthoDB:EOG405S0T GO:GO:0010610 GO:GO:0006403 EMBL:AK044850
EMBL:AK013940 EMBL:AL606704 EMBL:BC051679 IPI:IPI00131056
RefSeq:NP_034081.1 UniGene:Mm.294769 UniGene:Mm.490105
ProteinModelPortal:O88477 SMR:O88477 DIP:DIP-48578N STRING:O88477
PhosphoSite:O88477 PaxDb:O88477 PRIDE:O88477
Ensembl:ENSMUST00000013559 GeneID:140486 KEGG:mmu:140486
UCSC:uc007lay.2 InParanoid:O88477 NextBio:369796 Bgee:O88477
Genevestigator:O88477 Uniprot:O88477
Length = 577
Score = 171 (65.3 bits), Expect = 9.5e-13, Sum P(2) = 9.5e-13
Identities = 50/175 (28%), Positives = 86/175 (49%)
Query: 21 APVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGT 80
AP K P + P +R LV GA+IGK G+TI + Q+ ++I + R G
Sbjct: 187 APAKQ---QPVDIP--LRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKEN--AGA 239
Query: 81 TDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKA 140
++ I + T + A ++++ + E AD+V L+++ N+ G +IGK
Sbjct: 240 AEKAISVHSTPEGCSSACKMILEIMHKEAKDTKTADEV----PLKILAHNNFVGRLIGKE 295
Query: 141 GATIKSFMDDSQAVIKISRL-DHSYYGLNDRLVTLTGTLDEQMRALELILLKLSE 194
G +K D++ I IS L D + Y +R +T+ G ++ RA + I+ K+ E
Sbjct: 296 GRNLKKVEQDTETKITISSLQDLTLYN-PERTITVKGAIENCCRAEQEIMKKVRE 349
Score = 123 (48.4 bits), Expect = 0.00013, P = 0.00013
Identities = 41/154 (26%), Positives = 72/154 (46%)
Query: 6 SSYVPSPDVHGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSG 65
SS VP P AP S P ++ + F+ + + GA+IGK G I +
Sbjct: 380 SSAVPPPP-SSVTGAAPYSSFMQAPEQEMVQV-FIPAQAV-GAIIGKKGQHIKQLSRFAS 436
Query: 66 ARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLR 125
A I+++ P + R+++I+G + +A + KL E + ++V +T +R
Sbjct: 437 ASIKIAPPET--PDSKVRMVVITGPPEAQFKAQGRIYGKLKEE-NFFGPKEEVKLETHIR 493
Query: 126 LIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISR 159
VP S+ G +IGK G T+ + + A + + R
Sbjct: 494 --VPASAAGRVIGKGGKTVNELQNLTAAEVVVPR 525
Score = 67 (28.6 bits), Expect = 9.5e-13, Sum P(2) = 9.5e-13
Identities = 16/60 (26%), Positives = 33/60 (55%)
Query: 268 IGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
+G ++G+ G++I ++S+ + A IK++ + R V I+GP + A+ I K+
Sbjct: 417 VGAIIGKKGQHIKQLSRFASASIKIAPPET--PDSKVRMVVITGPPEAQFKAQGRIYGKL 474
Score = 54 (24.1 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 239 YGPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKV 292
YG + F K++ I V G V+G+GG+ + E+ ++ A + V
Sbjct: 471 YG-KLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVV 523
>MGI|MGI:1890359 [details] [associations]
symbol:Igf2bp3 "insulin-like growth factor 2 mRNA binding
protein 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0048027 "mRNA 5'-UTR
binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
MGI:MGI:1890359 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
HSSP:Q9Y6M1 HOVERGEN:HBG052725 KO:K13197 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 OrthoDB:EOG405S0T
CTD:10643 OMA:EAQDTKF ChiTaRS:Igf2bp3 EMBL:AK088465 EMBL:AK011689
EMBL:AK147140 EMBL:BC045138 EMBL:BC049082 IPI:IPI00331315
RefSeq:NP_076159.3 UniGene:Mm.281018 ProteinModelPortal:Q9CPN8
SMR:Q9CPN8 STRING:Q9CPN8 PhosphoSite:Q9CPN8 PaxDb:Q9CPN8
PRIDE:Q9CPN8 Ensembl:ENSMUST00000031838 GeneID:140488
KEGG:mmu:140488 UCSC:uc009bwi.2 InParanoid:Q9CPN8 NextBio:369800
Bgee:Q9CPN8 Genevestigator:Q9CPN8 Uniprot:Q9CPN8
Length = 579
Score = 164 (62.8 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 52/192 (27%), Positives = 86/192 (44%)
Query: 10 PSPDVHGKRSTAPV-KSLSSDP----TEKPTYI--RFLVSNPLAGAVIGKGGSTINDFQS 62
PSP + G+R S + P +KP + R LV GA+IGK G+TI +
Sbjct: 164 PSPQLRGRRGPGQRGSSRQASPGSVSKQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITK 223
Query: 63 QSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKT 122
Q+ ++I + R G ++ I I T + +L +H E Q +
Sbjct: 224 QTQSKIDVHRKEN--TGAAEKSITILSTPE----GTSAACKSILEIMHKEAQDIKFTEEI 277
Query: 123 KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQM 182
L+++ N+ G +IGK G +K D+ I IS L +R +T+ G+++
Sbjct: 278 PLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITVKGSVETCA 337
Query: 183 RALELILLKLSE 194
+A E I+ K+ E
Sbjct: 338 KAEEEIMKKIRE 349
Score = 117 (46.2 bits), Expect = 0.00062, P = 0.00062
Identities = 45/172 (26%), Positives = 81/172 (47%)
Query: 6 SSYVPSPDVHGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSG 65
+S +P P G ST + +E T F+ + + GA+IGK G I +G
Sbjct: 379 TSGMPPP-TSGPPSTLTPPYPQFEQSETETVHLFIPALSV-GAIIGKQGQHIKQLSRFAG 436
Query: 66 ARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLR 125
A I+++ + P R+++I+G + +A + K+ E + ++V + +R
Sbjct: 437 ASIKIAPAEA--PDAKVRMVIITGPPEAQFKAQGRIYGKIKEENFVSPK-EEVKLEAHIR 493
Query: 126 LIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVT-LTG 176
VP+ + G +IGK G T+ S A + + R D + ND++V +TG
Sbjct: 494 --VPSFAAGRVIGKGGKTVNELQSLSSAEVVVPR-DQTP-DENDQVVVKITG 541
Score = 74 (31.1 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 18/76 (23%), Positives = 39/76 (51%)
Query: 252 KDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISG 311
+ T ++ + + +G ++G+ G++I ++S+ +GA IK++ R V I+G
Sbjct: 401 EQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEA--PDAKVRMVIITG 458
Query: 312 PQRSIRTAESMIMQKV 327
P + A+ I K+
Sbjct: 459 PPEAQFKAQGRIYGKI 474
Score = 58 (25.5 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
Identities = 21/87 (24%), Positives = 38/87 (43%)
Query: 239 YGPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDF 298
YG + F + K++ I V G V+G+GG+ + E+ +S A + V R
Sbjct: 471 YG-KIKEENFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQSLSSAEVVVP-RDQT 528
Query: 299 FSGTSERKVTISGPQRSIRTAESMIMQ 325
+ V I+G + + A+ I +
Sbjct: 529 PDENDQVVVKITGHFYACQVAQRKIQE 555
>RGD|708580 [details] [associations]
symbol:Igf2bp1 "insulin-like growth factor 2 mRNA binding protein
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0006403 "RNA localization" evidence=IMP] [GO:0010494
"cytoplasmic stress granule" evidence=ISS] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=ISS]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0030027 "lamellipodium" evidence=IEA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=ISS]
[GO:0043197 "dendritic spine" evidence=IEA] [GO:0045182
"translation regulator activity" evidence=IEA] [GO:0048027 "mRNA
5'-UTR binding" evidence=IEA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IEA] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 Pfam:PF13014 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 RGD:708580
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
GO:GO:0030425 Gene3D:3.30.70.330 GO:GO:0043197 GO:GO:0045182
GO:GO:0030027 GO:GO:0048027 GO:GO:0003730 GO:GO:0010494
GO:GO:0070937 GO:GO:0070934 HSSP:Q9Y6M1 HOVERGEN:HBG052725
CTD:10642 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OMA:EQETVHV OrthoDB:EOG405S0T GO:GO:0010610
GO:GO:0006403 EMBL:AF541940 IPI:IPI00192556 RefSeq:NP_783184.1
UniGene:Rn.77572 ProteinModelPortal:Q8CGX0 SMR:Q8CGX0 STRING:Q8CGX0
PhosphoSite:Q8CGX0 Ensembl:ENSRNOT00000008139 GeneID:303477
KEGG:rno:303477 UCSC:RGD:708580 InParanoid:Q8CGX0 NextBio:651402
ArrayExpress:Q8CGX0 Genevestigator:Q8CGX0 Uniprot:Q8CGX0
Length = 577
Score = 194 (73.4 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 67/292 (22%), Positives = 129/292 (44%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
+R LV GA+IGK G+TI + Q+ ++I + R G ++ I + T +
Sbjct: 198 LRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKEN--AGAAEKAISVHSTPEGCSS 255
Query: 97 AVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIK 156
A ++++ + E AD+V L+++ N+ G +IGK G +K D++ I
Sbjct: 256 ACKMILEIMHKEAKDTKTADEV----PLKILAHNNFVGRLIGKEGRNLKKVEQDTETKIT 311
Query: 157 ISRL-DHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPYTYAGVFFSG 215
IS L D + Y +R +T+ G ++ RA + I+ K+ E Y + + G
Sbjct: 312 ISSLQDLTLYN-PERTITVKGAIENCCRAEQEIMKKVRE--AYENDVAA-MSLQSHLIPG 367
Query: 216 FHGMPYGXXXXXXXXXXHNTAAHYGPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRG 275
+ G ++ G G Q + + + + + +G ++G+
Sbjct: 368 LNLAAVGLFPASSSAVPPPPSSVTGAAPYGSFMQAPEQEMVQ---VFIPAQAVGAIIGKK 424
Query: 276 GRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
G++I ++S+ + A IK++ + R V I+GP + A+ I K+
Sbjct: 425 GQHIKQLSRFASASIKIAPPET--PDSKVRMVVITGPPEAQFKAQGRIYGKL 474
Score = 121 (47.7 bits), Expect = 0.00022, P = 0.00022
Identities = 41/154 (26%), Positives = 72/154 (46%)
Query: 6 SSYVPSPDVHGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSG 65
SS VP P AP S P ++ + F+ + + GA+IGK G I +
Sbjct: 380 SSAVPPPP-SSVTGAAPYGSFMQAPEQEMVQV-FIPAQAV-GAIIGKKGQHIKQLSRFAS 436
Query: 66 ARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLR 125
A I+++ P + R+++I+G + +A + KL E + ++V +T +R
Sbjct: 437 ASIKIAPPET--PDSKVRMVVITGPPEAQFKAQGRIYGKLKEE-NFFGPKEEVKLETHIR 493
Query: 126 LIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISR 159
VP S+ G +IGK G T+ + + A + + R
Sbjct: 494 --VPASAAGRVIGKGGKTVNELQNLTAAEVVVPR 525
Score = 80 (33.2 bits), Expect = 5.4e-05, Sum P(3) = 5.4e-05
Identities = 23/75 (30%), Positives = 39/75 (52%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMR 183
+++ +P + G+IIGK G IK + A IKI+ + + R+V +TG + Q +
Sbjct: 408 VQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKV--RMVVITGPPEAQFK 465
Query: 184 ALELILLKLSEDTLY 198
A I KL E+ +
Sbjct: 466 AQGRIYGKLKEENFF 480
Score = 76 (31.8 bits), Expect = 5.4e-05, Sum P(3) = 5.4e-05
Identities = 21/92 (22%), Positives = 37/92 (40%)
Query: 24 KSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDR 83
K T ++ L N G +IGK G + + + +I +S + +R
Sbjct: 266 KEAKDTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPER 325
Query: 84 IIMISGTIDEILRAVDLVIDKLLTELHAEDQA 115
I + G I+ RA ++ K+ E + D A
Sbjct: 326 TITVKGAIENCCRAEQEIMKKV-REAYENDVA 356
Score = 54 (24.1 bits), Expect = 5.4e-05, Sum P(3) = 5.4e-05
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 239 YGPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKV 292
YG + F K++ I V G V+G+GG+ + E+ ++ A + V
Sbjct: 471 YG-KLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVV 523
>UNIPROTKB|E1BFI4 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0044430
"cytoskeletal part" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171 CTD:10644
GO:GO:0044430 OMA:KQQEQKH EMBL:DAAA02001852 EMBL:DAAA02001853
EMBL:DAAA02001854 EMBL:DAAA02001855 EMBL:DAAA02001856
IPI:IPI00721408 RefSeq:NP_001179433.1 UniGene:Bt.33805
ProteinModelPortal:E1BFI4 Ensembl:ENSBTAT00000036032 GeneID:519028
KEGG:bta:519028 NextBio:20872792 Uniprot:E1BFI4
Length = 599
Score = 157 (60.3 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 56/216 (25%), Positives = 94/216 (43%)
Query: 15 HGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSH 74
H R SS + +R LV GA+IGK G TI + Q+ +R+ + R
Sbjct: 174 HSSREQGHAPGGSSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKE 233
Query: 75 EFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCG 134
G ++ + I T + A ++++ + E A+++ L+++ N G
Sbjct: 234 N--SGAAEKPVTIHATPEGTSEACRMILEIMQKEADETKLAEEI----PLKILAHNGLVG 287
Query: 135 SIIGKAGATIKSFMDDSQAVIKISRL-DHSYYGLNDRLVTLTGTLDEQMRALELILLKLS 193
+IGK G +K ++ I IS L D S Y +R +T+ GT++ A I+ KL
Sbjct: 288 RLIGKEGRNLKKIEHETGTKITISSLQDLSIYN-PERTITVKGTVEACANAEIEIMKKLR 346
Query: 194 E----DTLY--SQTMTVP---YTYAGVFFSGFHGMP 220
E D L Q +P + G+F +G +P
Sbjct: 347 EAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVLP 382
Score = 122 (48.0 bits), Expect = 0.00018, P = 0.00018
Identities = 31/123 (25%), Positives = 63/123 (51%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
+ + GA+IGK G+ I +GA I+++ + P ++R+++I+G + +
Sbjct: 430 VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG--PDVSERMVIITGPPEAQFK 487
Query: 97 AVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIK 156
A + KL E + + ++V + +R VP+S+ G +IGK G T+ + + A +
Sbjct: 488 AQGRIFGKLKEE-NFFNPKEEVKLEAHIR--VPSSTAGRVIGKGGKTVNELQNLTSAEVI 544
Query: 157 ISR 159
+ R
Sbjct: 545 VPR 547
Score = 99 (39.9 bits), Expect = 9.2e-05, Sum P(3) = 9.2e-05
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMR 183
+ L +P + G+IIGK GA IK + A IKI+ + +++R+V +TG + Q +
Sbjct: 430 VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGP--DVSERMVIITGPPEAQFK 487
Query: 184 ALELILLKLSEDTLYS 199
A I KL E+ ++
Sbjct: 488 AQGRIFGKLKEENFFN 503
Score = 82 (33.9 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 21/89 (23%), Positives = 44/89 (49%)
Query: 239 YGPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDF 298
Y P+ G ++ + + + + +G ++G+ G +I ++++ +GA IK++
Sbjct: 410 YPPHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG- 468
Query: 299 FSGTSERKVTISGPQRSIRTAESMIMQKV 327
SER V I+GP + A+ I K+
Sbjct: 469 -PDVSERMVIITGPPEAQFKAQGRIFGKL 496
Score = 62 (26.9 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 22/80 (27%), Positives = 36/80 (45%)
Query: 248 FQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKV 307
F N K++ I V G V+G+GG+ + E+ ++ A + V R E V
Sbjct: 501 FFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVP-RDQTPDENEEVIV 559
Query: 308 TISGPQRSIRTAESMIMQKV 327
I G + +TA+ I + V
Sbjct: 560 RIIGHFFASQTAQRKIREIV 579
Score = 45 (20.9 bits), Expect = 9.2e-05, Sum P(3) = 9.2e-05
Identities = 19/72 (26%), Positives = 33/72 (45%)
Query: 44 PLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTD---RIIMISGTIDEILRAVDL 100
PLAG V+ K G D+ Q+ A R+ E G + +I+ + ++ + LR+ +
Sbjct: 29 PLAGQVLLKSGYAFVDYPDQNWA----IRAIETLSGKVELHGKIMEVDYSVSKKLRSRKI 84
Query: 101 VIDKLLTELHAE 112
I + L E
Sbjct: 85 QIRNIPPHLQWE 96
>UNIPROTKB|F8W1G6 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021049
Ensembl:ENST00000546652 ArrayExpress:F8W1G6 Bgee:F8W1G6
Uniprot:F8W1G6
Length = 202
Score = 171 (65.3 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 39/115 (33%), Positives = 63/115 (54%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G ++ + +SGARI +S + +RII ++G + I +
Sbjct: 13 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN-----CPERIITLAGPTNAIFK 67
Query: 97 AVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMD 149
A ++IDKL ++ + ++ LRL+VP S CGS+IGK G IK +
Sbjct: 68 AFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 122
Score = 103 (41.3 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMR 183
+RL++ GSIIGK G ++K ++S A I IS + +R++TL G + +
Sbjct: 13 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN-----CPERIITLAGPTNAIFK 67
Query: 184 ALELILLKLSEDTLYSQT 201
A +I+ KL ED S T
Sbjct: 68 AFAMIIDKLEEDISSSMT 85
Score = 41 (19.5 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 258 SLTIGVADEHIGFVVGRGGRNIMEISQ 284
+L + V G ++G+GG I EI +
Sbjct: 96 TLRLVVPASQCGSLIGKGGCKIKEIRE 122
>UNIPROTKB|F1S0X8 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723
GeneTree:ENSGT00650000093048 OMA:AAPHQNT EMBL:CU914779
Ensembl:ENSSSCT00000006271 Uniprot:F1S0X8
Length = 548
Score = 146 (56.5 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 42/154 (27%), Positives = 77/154 (50%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGT---IDEIL 95
F V + + G +IG+GG I+ Q++SG +IQ++ P +R +++GT I++
Sbjct: 82 FKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIP---ERPCVLTGTPESIEQAK 138
Query: 96 RAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVI 155
R + ++D+ + D G+ T L++P S G +IGK G TIK + + V
Sbjct: 139 RLLGQIVDRCRNGPGFHNDVD--GSSTIQELLIPASKVGLVIGKGGETIKQ-LQERTGVK 195
Query: 156 KISRLDHSYYGLNDRLVTLTGTLDEQMRALELIL 189
+ D D+ + +TG + +A E++L
Sbjct: 196 MVMIQDGPLPTGADKPLRITGDPFKVQQAREMVL 229
Score = 114 (45.2 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 43/171 (25%), Positives = 78/171 (45%)
Query: 28 SDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMI 87
+D T L+ G VIGKGG TI Q ++G ++ + + P D+ + I
Sbjct: 156 NDVDGSSTIQELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPL-PTGADKPLRI 214
Query: 88 SGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKT---------KLRLIVPNSSCGSIIG 138
+G ++ +A ++V++ ++ E +DQAD G + + + VP + G +IG
Sbjct: 215 TGDPFKVQQAREMVLE-IIRE---KDQADFRGVRGDFSSRMGGGSIEVSVPRFAVGIVIG 270
Query: 139 KAGATIKSFMDDSQAVIKISRLDHSYYGLN-DRLVTLTGTLDEQMRALELI 188
+ G IK +D+ I+ D G++ +R + G D A +I
Sbjct: 271 RNGEMIKKIQNDAGVRIQFKPDD----GISPERAAQVMGPPDRCQHAAHVI 317
Score = 92 (37.4 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 259 LTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRT 318
+T V + G V+G+GG NI I+Q SGA +++ + R TI G + I
Sbjct: 357 ITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPGLRVFTIRGVPQQIEV 416
Query: 319 AESMIMQKV 327
A +I +KV
Sbjct: 417 ARHLIDEKV 425
Score = 74 (31.1 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 258 SLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIR 317
S+ + V +G V+GR G I +I +G RI+ D S ER + GP +
Sbjct: 255 SIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKP-DDGIS--PERAAQVMGPPDRCQ 311
Query: 318 TAESMIMQKVAYASDR 333
A +I + + A +R
Sbjct: 312 HAAHVISELILTAQER 327
>UNIPROTKB|C9JZY3 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00984041 ProteinModelPortal:C9JZY3 SMR:C9JZY3
STRING:C9JZY3 Ensembl:ENST00000468324 ArrayExpress:C9JZY3
Bgee:C9JZY3 Uniprot:C9JZY3
Length = 168
Score = 170 (64.9 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 51/159 (32%), Positives = 80/159 (50%)
Query: 26 LSSDPTEKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRI 84
L +P T +R L+ G++IGK G T+ + QS ARI +S +RI
Sbjct: 8 LEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----SCPERI 62
Query: 85 IMISGTIDEILRAVDLVIDKLLTELHAED-QADDVGTK-TKLRLIVPNSSCGSIIGKAGA 142
I+G+ + AV ++ KL +L A +V LRL++P S CGS+IGKAG
Sbjct: 63 TTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 143 TIKSFMDDSQAVIKISR--LDHSYYGLNDRLVTLTGTLD 179
IK + + A ++++ L +S +R VT++G D
Sbjct: 123 KIKEIRETTGAQVQVAGDLLPNS----TERAVTVSGVPD 157
Score = 103 (41.3 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 26/83 (31%), Positives = 41/83 (49%)
Query: 113 DQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLV 172
++ ++ LR+++ GSIIGK G T+K + S A I IS +R+
Sbjct: 9 EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISE-----GSCPERIT 63
Query: 173 TLTGTLDEQMRALELILLKLSED 195
T+TG+ A+ +I KL ED
Sbjct: 64 TITGSTAAVFHAVSMIAFKLDED 86
Score = 89 (36.4 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 258 SLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISG 311
+L + + G ++G+ G I EI + +GA+++V+ GD ++ER VT+SG
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVA--GDLLPNSTERAVTVSG 154
>UNIPROTKB|F1M8T3 [details] [associations]
symbol:F1M8T3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 IPI:IPI00780141
Ensembl:ENSRNOT00000055638 OMA:SISEGNC Uniprot:F1M8T3
Length = 214
Score = 170 (64.9 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 53/196 (27%), Positives = 103/196 (52%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G ++ + +SGARI +S + +RII ++G + +
Sbjct: 6 IRLLMHGKEVGSIIGKDGESVKKMRKESGARISISEGN-----CPERIITLAGPTN--FK 58
Query: 97 AVDLVIDKLLTELHAEDQADDVGTKTKLR--LIVPNSSCGSIIGKAGATIKSFMDDSQAV 154
+ ++IDKL ++ + ++ ++ L+VP S CGS+IGK G IK + +
Sbjct: 59 SFAMIIDKLEEDISSSMTNSTAASRPRVTVWLVVPASQCGSLIGKGGCKIKEIRESTGVQ 118
Query: 155 IKIS--RLDHSYYGLNDRLVTLTG---TLDEQMRALELILLK-LSEDTLYSQTMTVPYT- 207
++++ L +S +R +T+ G ++ E ++ + +++LK LS+ + +T+PY
Sbjct: 119 VQVAGDMLPNS----TERAITIAGIPQSIIECVKQICVVMLKTLSQSP---KGVTIPYLP 171
Query: 208 --YAGVFFSGFHGMPY 221
+ V F+G G Y
Sbjct: 172 KPSSPVIFTG--GQAY 185
>UNIPROTKB|F1MPB2 [details] [associations]
symbol:IGF2BP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
KO:K13197 GeneTree:ENSGT00530000063171 CTD:10643 OMA:EAQDTKF
EMBL:DAAA02010222 IPI:IPI00712553 RefSeq:NP_001179217.1
UniGene:Bt.80827 PRIDE:F1MPB2 Ensembl:ENSBTAT00000025854
GeneID:539650 KEGG:bta:539650 NextBio:20878131 Uniprot:F1MPB2
Length = 580
Score = 159 (61.0 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 49/181 (27%), Positives = 82/181 (45%)
Query: 16 GKRSTAPVKSLSSDPTEKPTYI--RFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRS 73
G+R ++ S S +KP + R LV GA+IGK G+TI + Q+ ++I + R
Sbjct: 175 GQRGSSRQGSPGSVSKQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRK 234
Query: 74 HEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSC 133
G ++ I I T + +L +H E Q + L+++ N+
Sbjct: 235 EN--AGAAEKSITILSTPE----GTSAACKSILEIMHKEAQDIKFTEEIPLKILAHNNFV 288
Query: 134 GSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLS 193
G +IGK G +K D+ I IS L +R +T+ G ++ +A E I+ K+
Sbjct: 289 GRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITVKGNVETCAKAEEEIMKKIR 348
Query: 194 E 194
E
Sbjct: 349 E 349
Score = 76 (31.8 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 19/79 (24%), Positives = 40/79 (50%)
Query: 249 QNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVT 308
Q + T ++ + + +G ++G+ G++I ++S+ +GA IK++ R V
Sbjct: 399 QFEQQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEA--PDAKVRMVI 456
Query: 309 ISGPQRSIRTAESMIMQKV 327
I+GP + A+ I K+
Sbjct: 457 ITGPPEAQFKAQGRIYGKI 475
Score = 58 (25.5 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 21/87 (24%), Positives = 38/87 (43%)
Query: 239 YGPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDF 298
YG + F + K++ I V G V+G+GG+ + E+ +S A + V R
Sbjct: 472 YG-KIKEENFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVVP-RDQT 529
Query: 299 FSGTSERKVTISGPQRSIRTAESMIMQ 325
+ V I+G + + A+ I +
Sbjct: 530 PDENDQVVVKITGHFYACQVAQRKIQE 556
>UNIPROTKB|D4A6P7 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003723 IPI:IPI00951323
Ensembl:ENSRNOT00000066327 ArrayExpress:D4A6P7 Uniprot:D4A6P7
Length = 155
Score = 168 (64.2 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 41/102 (40%), Positives = 63/102 (61%)
Query: 12 PDVHGKRSTAPVKSLSSDPT---EKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGAR 67
PD + AP ++ S+ T E Y ++ L+ + AG++IGKGG TI Q ++GA
Sbjct: 22 PDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGAT 81
Query: 68 IQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTEL 109
I+LS+S +F+PGTT+R+ +I GTI E L AV I + + E+
Sbjct: 82 IKLSKSKDFYPGTTERVCLIQGTI-EALNAVHGFIAEKIREM 122
Score = 128 (50.1 bits), Expect = 9.2e-08, P = 9.2e-08
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 241 PNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFS 300
P G K N +D L + + G ++G+GG+ I+++ + +GA IK+S DF+
Sbjct: 33 PEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYP 92
Query: 301 GTSERKVTISGPQRSIRTAESMIMQKV 327
GT+ER I G ++ I +K+
Sbjct: 93 GTTERVCLIQGTIEALNAVHGFIAEKI 119
Score = 108 (43.1 bits), Expect = 0.00011, P = 0.00011
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMR 183
L++++P+ + GSIIGK G TI ++ A IK+S+ Y G +R+ + GT+ E +
Sbjct: 51 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTI-EALN 109
Query: 184 ALE-LILLKLSE 194
A+ I K+ E
Sbjct: 110 AVHGFIAEKIRE 121
>UNIPROTKB|Q96I24 [details] [associations]
symbol:FUBP3 "Far upstream element-binding protein 3"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0010628 "positive regulation of gene expression"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:U69127 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0003677 EMBL:CH471090
GO:GO:0006351 GO:GO:0003723 EMBL:AL359092 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 EMBL:AK295155
EMBL:AL353695 EMBL:BC001325 EMBL:BC007874 EMBL:BC137338
EMBL:BC137340 IPI:IPI00063245 IPI:IPI00377261 RefSeq:NP_003925.1
UniGene:Hs.673029 UniGene:Hs.98751 ProteinModelPortal:Q96I24
SMR:Q96I24 DIP:DIP-50124N IntAct:Q96I24 STRING:Q96I24
PhosphoSite:Q96I24 DMDM:37078499 REPRODUCTION-2DPAGE:IPI00377261
PaxDb:Q96I24 PRIDE:Q96I24 DNASU:8939 Ensembl:ENST00000319725
Ensembl:ENST00000372376 GeneID:8939 KEGG:hsa:8939 UCSC:uc004bzr.1
UCSC:uc010mzd.1 CTD:8939 GeneCards:GC09P133454 HGNC:HGNC:4005
HPA:HPA047658 MIM:603536 neXtProt:NX_Q96I24 PharmGKB:PA28421
InParanoid:Q96I24 OMA:AAPHQNT OrthoDB:EOG4X97H1 PhylomeDB:Q96I24
GenomeRNAi:8939 NextBio:33614 ArrayExpress:Q96I24 Bgee:Q96I24
CleanEx:HS_FUBP3 Genevestigator:Q96I24 GermOnline:ENSG00000107164
Uniprot:Q96I24
Length = 572
Score = 135 (52.6 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 39/154 (25%), Positives = 75/154 (48%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGT---IDEIL 95
F V + + G +IG+GG I+ Q++SG +IQ++ P +R +++GT I++
Sbjct: 82 FKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIP---ERPCVLTGTPESIEQAK 138
Query: 96 RAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVI 155
R + ++D+ + D T +++P S G +IG+ G TIK + + V
Sbjct: 139 RLLGQIVDRCRNGPGFHNDIDS--NSTIQEILIPASKVGLVIGRGGETIKQ-LQERTGVK 195
Query: 156 KISRLDHSYYGLNDRLVTLTGTLDEQMRALELIL 189
+ D D+ + +TG + +A E++L
Sbjct: 196 MVMIQDGPLPTGADKPLRITGDAFKVQQAREMVL 229
Score = 115 (45.5 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
Identities = 42/171 (24%), Positives = 78/171 (45%)
Query: 28 SDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMI 87
+D T L+ G VIG+GG TI Q ++G ++ + + P D+ + I
Sbjct: 156 NDIDSNSTIQEILIPASKVGLVIGRGGETIKQLQERTGVKMVMIQDGPL-PTGADKPLRI 214
Query: 88 SGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKT---------KLRLIVPNSSCGSIIG 138
+G ++ +A ++V++ ++ E +DQAD G + + + VP + G +IG
Sbjct: 215 TGDAFKVQQAREMVLE-IIRE---KDQADFRGVRGDFNSRMGGGSIEVSVPRFAVGIVIG 270
Query: 139 KAGATIKSFMDDSQAVIKISRLDHSYYGLN-DRLVTLTGTLDEQMRALELI 188
+ G IK +D+ I+ D G++ +R + G D A +I
Sbjct: 271 RNGEMIKKIQNDAGVRIQFKPDD----GISPERAAQVMGPPDRCQHAAHII 317
Score = 102 (41.0 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 28/92 (30%), Positives = 42/92 (45%)
Query: 236 AAHYGPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDR 295
AA G G + +T V + G V+G+GG NI I+Q SGA +++
Sbjct: 334 AAARGRGRGRGDWSVGAPGGVQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRN 393
Query: 296 GDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
S + R+ TI G + I A +I +KV
Sbjct: 394 PPPNSDPNLRRFTIRGVPQQIEVARQLIDEKV 425
Score = 74 (31.1 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 258 SLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIR 317
S+ + V +G V+GR G I +I +G RI+ D S ER + GP +
Sbjct: 255 SIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKP-DDGIS--PERAAQVMGPPDRCQ 311
Query: 318 TAESMIMQKVAYASDR 333
A +I + + A +R
Sbjct: 312 HAAHIISELILTAQER 327
>ZFIN|ZDB-GENE-060929-1258 [details] [associations]
symbol:igf2bp1 "insulin-like growth factor 2 mRNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=ISS] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322
SMART:SM00360 ZFIN:ZDB-GENE-060929-1258 GO:GO:0005634 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0070937
HOVERGEN:HBG052725 CTD:10642 eggNOG:NOG249985 HOGENOM:HOG000000675
OrthoDB:EOG405S0T EMBL:BC124196 IPI:IPI00800578
RefSeq:NP_001070027.1 UniGene:Dr.81351 ProteinModelPortal:Q08CK7
SMR:Q08CK7 PRIDE:Q08CK7 GeneID:558182 KEGG:dre:558182
InParanoid:Q08CK7 NextBio:20882359 Uniprot:Q08CK7
Length = 598
Score = 190 (71.9 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 72/313 (23%), Positives = 136/313 (43%)
Query: 18 RSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFF 77
R +P + S +R LV GA+IGK G+TI + Q+ ++I + R
Sbjct: 182 RQMSPGSGIPSKHQHADIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKEN-- 239
Query: 78 PGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSII 137
G ++ I I T + A ++++ + E AD+V L+++ N+ G +I
Sbjct: 240 AGAAEKPISIHSTPEGCSAACRMILEIMNQEAKDTKTADEV----PLKVLAHNNFVGRLI 295
Query: 138 GKAGATIKSFMDDSQAVIKISRL-DHSYYGLNDRLVTLTGTLDEQMRALELILLKLSE-- 194
GK G +K D+ I IS L D + Y +R +T+ G+++ A + I+ K+ E
Sbjct: 296 GKEGRNLKKVEQDTDTKITISPLQDLTLYN-PERTITVKGSIEACCLAEQEIMKKVREAY 354
Query: 195 DTLYSQTMTVPYTYAGVFFSGFHGMPYGXXXXXXXXXXHNTAAHYGPNMGGRKFQNNKDD 254
D + + G+ P YGP MG + +
Sbjct: 355 DNDIAAMNQQTHLIPGLNLGAIGLFPPSSAMPPPALGNSVPGPPYGP-MGASEQE----- 408
Query: 255 RTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQR 314
++ + + + +G ++G+ G++I ++S+ +GA IK++ + R V ++GP
Sbjct: 409 ---TVHVYIPAQAVGALIGKKGQHIKQLSRFAGASIKIAPAEA--PDSKMRMVIVTGPPE 463
Query: 315 SIRTAESMIMQKV 327
+ A+ I K+
Sbjct: 464 AQFKAQGRIYGKL 476
>UNIPROTKB|F8VWQ4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021922
ProteinModelPortal:F8VWQ4 SMR:F8VWQ4 PRIDE:F8VWQ4
Ensembl:ENST00000550927 ArrayExpress:F8VWQ4 Bgee:F8VWQ4
Uniprot:F8VWQ4
Length = 308
Score = 116 (45.9 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 37/138 (26%), Positives = 64/138 (46%)
Query: 14 VHGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRS 73
+HGK ++ + + S+ + P +R +V G++IGKGG I + + +GA++Q++
Sbjct: 20 MHGKDISSSMTN-STAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG- 77
Query: 74 HEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSC 133
+ P +T+R I I+G I+ V + +L L Q+ G R P S
Sbjct: 78 -DMLPNSTERAITIAGIPQSIIECVKQICVVMLETL---SQSPPKGVTIPYR---PKPSS 130
Query: 134 GSIIGKAGATIKSFMDDS 151
+I G S DS
Sbjct: 131 SPVIFAGGQDRYSTGSDS 148
Score = 114 (45.2 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 26/69 (37%), Positives = 46/69 (66%)
Query: 255 RTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQR 314
+T S + + ++ IG ++GR G I EI Q+SGA+IK+++ + G+++R+VTI+G
Sbjct: 229 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVE---GSTDRQVTITGSAA 285
Query: 315 SIRTAESMI 323
SI A+ +I
Sbjct: 286 SISLAQYLI 294
Score = 105 (42.0 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 39/132 (29%), Positives = 66/132 (50%)
Query: 86 MISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTK-------LRLIVPNSSCGSIIG 138
M +G I+ L V L I +LL +H +D + + T LRL+VP S CGS+IG
Sbjct: 1 MDTGVIEGGLN-VTLTI-RLL--MHGKDISSSMTNSTAASRPPVTLRLVVPASQCGSLIG 56
Query: 139 KAGATIKSFMDDSQAVIKIS--RLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDT 196
K G IK + + A ++++ L +S +R +T+ G + ++ I + + E
Sbjct: 57 KGGCKIKEIRESTGAQVQVAGDMLPNS----TERAITIAGIPQSIIECVKQICVVMLETL 112
Query: 197 LYS--QTMTVPY 206
S + +T+PY
Sbjct: 113 SQSPPKGVTIPY 124
>UNIPROTKB|I3L2B5 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 ProteinModelPortal:I3L2B5 SMR:I3L2B5
Ensembl:ENST00000574031 Bgee:I3L2B5 Uniprot:I3L2B5
Length = 152
Score = 167 (63.8 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 40/102 (39%), Positives = 63/102 (61%)
Query: 12 PDVHGKRSTAPVKSLSSDPT---EKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGAR 67
PD + AP ++ S+ T E Y ++ L+ + AG++IGKGG TI Q ++GA
Sbjct: 23 PDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGAT 82
Query: 68 IQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTEL 109
I+LS+S +F+PGTT+R+ +I GT+ E L AV I + + E+
Sbjct: 83 IKLSKSKDFYPGTTERVCLIQGTV-EALNAVHGFIAEKIREM 123
Score = 129 (50.5 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 241 PNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFS 300
P G K N +D L + + G ++G+GG+ I+++ + +GA IK+S DF+
Sbjct: 34 PEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYP 93
Query: 301 GTSERKVTISGPQRSIRTAESMIMQKV 327
GT+ER I G ++ I +K+
Sbjct: 94 GTTERVCLIQGTVEALNAVHGFIAEKI 120
Score = 107 (42.7 bits), Expect = 0.00011, P = 0.00011
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMR 183
L++++P+ + GSIIGK G TI ++ A IK+S+ Y G +R+ + GT+ E +
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTV-EALN 110
Query: 184 ALE-LILLKLSE 194
A+ I K+ E
Sbjct: 111 AVHGFIAEKIRE 122
>UNIPROTKB|F8W659 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 IPI:IPI01021871
ProteinModelPortal:F8W659 SMR:F8W659 Ensembl:ENST00000547619
ArrayExpress:F8W659 Bgee:F8W659 Uniprot:F8W659
Length = 211
Score = 167 (63.8 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 40/102 (39%), Positives = 63/102 (61%)
Query: 12 PDVHGKRSTAPVKSLSSDPT---EKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGAR 67
PD + AP ++ S+ T E Y ++ L+ + AG++IGKGG TI Q ++GA
Sbjct: 23 PDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGAT 82
Query: 68 IQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTEL 109
I+LS+S +F+PGTT+R+ +I GT+ E L AV I + + E+
Sbjct: 83 IKLSKSKDFYPGTTERVCLIQGTV-EALNAVHGFIAEKIREM 123
Score = 129 (50.5 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 241 PNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFS 300
P G K N +D L + + G ++G+GG+ I+++ + +GA IK+S DF+
Sbjct: 34 PEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYP 93
Query: 301 GTSERKVTISGPQRSIRTAESMIMQKV 327
GT+ER I G ++ I +K+
Sbjct: 94 GTTERVCLIQGTVEALNAVHGFIAEKI 120
>UNIPROTKB|E1BKJ7 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA]
[GO:0045182 "translation regulator activity" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010610 "regulation of mRNA stability involved in response to
stress" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027 GO:GO:0003730
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 CTD:10642
GeneTree:ENSGT00530000063171 OMA:EQETVHV GO:GO:0010610
EMBL:DAAA02049054 EMBL:DAAA02049055 IPI:IPI00699469
RefSeq:NP_001179383.1 UniGene:Bt.27949 Ensembl:ENSBTAT00000015586
GeneID:516853 KEGG:bta:516853 NextBio:20872317 Uniprot:E1BKJ7
Length = 577
Score = 166 (63.5 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 45/159 (28%), Positives = 80/159 (50%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
+R LV GA+IGK G+TI + Q+ ++I + R G ++ I + T +
Sbjct: 198 LRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKEN--AGAAEKAISVHSTPEGCSS 255
Query: 97 AVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIK 156
A ++++ + E AD+V L+++ N+ G +IGK G +K D++ I
Sbjct: 256 ACKMILEIMHKEAKDTKTADEV----PLKILAHNNFVGRLIGKEGRNLKKVEQDTETKIT 311
Query: 157 ISRL-DHSYYGLNDRLVTLTGTLDEQMRALELILLKLSE 194
IS L D + Y +R +T+ G ++ RA + I+ K+ E
Sbjct: 312 ISSLQDLTLYN-PERTITVKGAIENCCRAEQEIMKKVRE 349
Score = 123 (48.4 bits), Expect = 0.00013, P = 0.00013
Identities = 41/154 (26%), Positives = 72/154 (46%)
Query: 6 SSYVPSPDVHGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSG 65
SS VP P AP S P ++ + F+ + + GA+IGK G I +
Sbjct: 380 SSAVPPPP-SSVTGAAPYSSFMQAPEQEMVQV-FIPAQAV-GAIIGKKGQHIKQLSRFAS 436
Query: 66 ARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLR 125
A I+++ P + R+++I+G + +A + KL E + ++V +T +R
Sbjct: 437 ASIKIAPPET--PDSKVRMVIITGPPEAQFKAQGRIYGKLKEE-NFFGPKEEVKLETHIR 493
Query: 126 LIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISR 159
VP S+ G +IGK G T+ + + A + + R
Sbjct: 494 --VPASAAGRVIGKGGKTVNELQNLTAAEVVVPR 525
Score = 79 (32.9 bits), Expect = 6.9e-05, Sum P(3) = 6.9e-05
Identities = 23/75 (30%), Positives = 39/75 (52%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMR 183
+++ +P + G+IIGK G IK + A IKI+ + + R+V +TG + Q +
Sbjct: 408 VQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKV--RMVIITGPPEAQFK 465
Query: 184 ALELILLKLSEDTLY 198
A I KL E+ +
Sbjct: 466 AQGRIYGKLKEENFF 480
Score = 76 (31.8 bits), Expect = 6.9e-05, Sum P(3) = 6.9e-05
Identities = 21/92 (22%), Positives = 37/92 (40%)
Query: 24 KSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDR 83
K T ++ L N G +IGK G + + + +I +S + +R
Sbjct: 266 KEAKDTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPER 325
Query: 84 IIMISGTIDEILRAVDLVIDKLLTELHAEDQA 115
I + G I+ RA ++ K+ E + D A
Sbjct: 326 TITVKGAIENCCRAEQEIMKKV-REAYENDVA 356
Score = 66 (28.3 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 16/60 (26%), Positives = 33/60 (55%)
Query: 268 IGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
+G ++G+ G++I ++S+ + A IK++ + R V I+GP + A+ I K+
Sbjct: 417 VGAIIGKKGQHIKQLSRFASASIKIAPPET--PDSKVRMVIITGPPEAQFKAQGRIYGKL 474
Score = 54 (24.1 bits), Expect = 8.0e-11, Sum P(2) = 8.0e-11
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 239 YGPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKV 292
YG + F K++ I V G V+G+GG+ + E+ ++ A + V
Sbjct: 471 YG-KLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVV 523
>UNIPROTKB|E2RTC5 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IEA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0045182 "translation regulator activity"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0010610 "regulation of mRNA stability involved in
response to stress" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027 GO:GO:0003730
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 CTD:10642
GeneTree:ENSGT00530000063171 OMA:EQETVHV GO:GO:0010610
EMBL:AAEX03006519 EMBL:AAEX03006520 RefSeq:XP_548184.2
ProteinModelPortal:E2RTC5 Ensembl:ENSCAFT00000026763 GeneID:491064
KEGG:cfa:491064 Uniprot:E2RTC5
Length = 577
Score = 166 (63.5 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 45/159 (28%), Positives = 80/159 (50%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
+R LV GA+IGK G+TI + Q+ ++I + R G ++ I + T +
Sbjct: 198 LRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKEN--AGAAEKAISVHSTPEGCSS 255
Query: 97 AVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIK 156
A ++++ + E AD+V L+++ N+ G +IGK G +K D++ I
Sbjct: 256 ACKMILEIMHKEAKDTKTADEV----PLKILAHNNFVGRLIGKEGRNLKKVEQDTETKIT 311
Query: 157 ISRL-DHSYYGLNDRLVTLTGTLDEQMRALELILLKLSE 194
IS L D + Y +R +T+ G ++ RA + I+ K+ E
Sbjct: 312 ISSLQDLTLYN-PERTITVKGAIENCCRAEQEIMKKVRE 349
Score = 123 (48.4 bits), Expect = 0.00013, P = 0.00013
Identities = 41/154 (26%), Positives = 72/154 (46%)
Query: 6 SSYVPSPDVHGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSG 65
SS VP P AP S P ++ + F+ + + GA+IGK G I +
Sbjct: 380 SSAVPPPP-SSVTGAAPYSSFMQAPEQEMVQV-FIPAQAV-GAIIGKKGQHIKQLSRFAS 436
Query: 66 ARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLR 125
A I+++ P + R+++I+G + +A + KL E + ++V +T +R
Sbjct: 437 ASIKIAPPET--PDSKVRMVIITGPPEAQFKAQGRIYGKLKEE-NFFGPKEEVKLETHIR 493
Query: 126 LIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISR 159
VP S+ G +IGK G T+ + + A + + R
Sbjct: 494 --VPASAAGRVIGKGGKTVNELQNLTAAEVVVPR 525
Score = 79 (32.9 bits), Expect = 6.9e-05, Sum P(3) = 6.9e-05
Identities = 23/75 (30%), Positives = 39/75 (52%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMR 183
+++ +P + G+IIGK G IK + A IKI+ + + R+V +TG + Q +
Sbjct: 408 VQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKV--RMVIITGPPEAQFK 465
Query: 184 ALELILLKLSEDTLY 198
A I KL E+ +
Sbjct: 466 AQGRIYGKLKEENFF 480
Score = 76 (31.8 bits), Expect = 6.9e-05, Sum P(3) = 6.9e-05
Identities = 21/92 (22%), Positives = 37/92 (40%)
Query: 24 KSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDR 83
K T ++ L N G +IGK G + + + +I +S + +R
Sbjct: 266 KEAKDTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPER 325
Query: 84 IIMISGTIDEILRAVDLVIDKLLTELHAEDQA 115
I + G I+ RA ++ K+ E + D A
Sbjct: 326 TITVKGAIENCCRAEQEIMKKV-REAYENDVA 356
Score = 66 (28.3 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 16/60 (26%), Positives = 33/60 (55%)
Query: 268 IGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
+G ++G+ G++I ++S+ + A IK++ + R V I+GP + A+ I K+
Sbjct: 417 VGAIIGKKGQHIKQLSRFASASIKIAPPET--PDSKVRMVIITGPPEAQFKAQGRIYGKL 474
Score = 54 (24.1 bits), Expect = 8.0e-11, Sum P(2) = 8.0e-11
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 239 YGPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKV 292
YG + F K++ I V G V+G+GG+ + E+ ++ A + V
Sbjct: 471 YG-KLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVV 523
>UNIPROTKB|Q9NZI8 [details] [associations]
symbol:IGF2BP1 "Insulin-like growth factor 2 mRNA-binding
protein 1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006403 "RNA localization" evidence=IEA]
[GO:0030027 "lamellipodium" evidence=IEA] [GO:0043197 "dendritic
spine" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=IMP]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=IDA]
[GO:0005829 "cytosol" evidence=TAS] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0045182 "translation
regulator activity" evidence=IDA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IDA] [GO:0042035 "regulation of cytokine biosynthetic
process" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005829 GO:GO:0005886 GO:GO:0005634 GO:GO:0005737
Reactome:REACT_116125 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0043197 GO:GO:0045182 GO:GO:0030027
GO:GO:0003723 GO:GO:0048027 GO:GO:0003730 GO:GO:0042035
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 HOVERGEN:HBG052725
CTD:10642 eggNOG:NOG249985 HOGENOM:HOG000000675 OMA:EQETVHV
OrthoDB:EOG405S0T GO:GO:0010610 EMBL:AF198254 EMBL:DQ227344
EMBL:AC091133 EMBL:AC105030 IPI:IPI00008557 IPI:IPI00930694
RefSeq:NP_001153895.1 RefSeq:NP_006537.3 UniGene:Hs.144936 PDB:3KRM
PDBsum:3KRM ProteinModelPortal:Q9NZI8 SMR:Q9NZI8 DIP:DIP-38139N
IntAct:Q9NZI8 STRING:Q9NZI8 PhosphoSite:Q9NZI8 DMDM:296434536
PaxDb:Q9NZI8 PeptideAtlas:Q9NZI8 PRIDE:Q9NZI8 DNASU:10642
Ensembl:ENST00000290341 Ensembl:ENST00000431824 GeneID:10642
KEGG:hsa:10642 UCSC:uc002iom.3 GeneCards:GC17P047074
H-InvDB:HIX0013955 HGNC:HGNC:28866 HPA:HPA021367 MIM:608288
neXtProt:NX_Q9NZI8 PharmGKB:PA143485501 InParanoid:Q9NZI8
PhylomeDB:Q9NZI8 EvolutionaryTrace:Q9NZI8 GenomeRNAi:10642
NextBio:40447 ArrayExpress:Q9NZI8 Bgee:Q9NZI8 CleanEx:HS_IGF2BP1
CleanEx:HS_ZBP1 Genevestigator:Q9NZI8 GO:GO:0006403 Uniprot:Q9NZI8
Length = 577
Score = 166 (63.5 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 45/159 (28%), Positives = 80/159 (50%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
+R LV GA+IGK G+TI + Q+ ++I + R G ++ I + T +
Sbjct: 198 LRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKEN--AGAAEKAISVHSTPEGCSS 255
Query: 97 AVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIK 156
A ++++ + E AD+V L+++ N+ G +IGK G +K D++ I
Sbjct: 256 ACKMILEIMHKEAKDTKTADEV----PLKILAHNNFVGRLIGKEGRNLKKVEQDTETKIT 311
Query: 157 ISRL-DHSYYGLNDRLVTLTGTLDEQMRALELILLKLSE 194
IS L D + Y +R +T+ G ++ RA + I+ K+ E
Sbjct: 312 ISSLQDLTLYN-PERTITVKGAIENCCRAEQEIMKKVRE 349
Score = 123 (48.4 bits), Expect = 0.00013, P = 0.00013
Identities = 41/154 (26%), Positives = 72/154 (46%)
Query: 6 SSYVPSPDVHGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSG 65
SS VP P AP S P ++ + F+ + + GA+IGK G I +
Sbjct: 380 SSAVPPPP-SSVTGAAPYSSFMQAPEQEMVQV-FIPAQAV-GAIIGKKGQHIKQLSRFAS 436
Query: 66 ARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLR 125
A I+++ P + R+++I+G + +A + KL E + ++V +T +R
Sbjct: 437 ASIKIAPPET--PDSKVRMVIITGPPEAQFKAQGRIYGKLKEE-NFFGPKEEVKLETHIR 493
Query: 126 LIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISR 159
VP S+ G +IGK G T+ + + A + + R
Sbjct: 494 --VPASAAGRVIGKGGKTVNELQNLTAAEVVVPR 525
Score = 79 (32.9 bits), Expect = 6.9e-05, Sum P(3) = 6.9e-05
Identities = 23/75 (30%), Positives = 39/75 (52%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMR 183
+++ +P + G+IIGK G IK + A IKI+ + + R+V +TG + Q +
Sbjct: 408 VQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKV--RMVIITGPPEAQFK 465
Query: 184 ALELILLKLSEDTLY 198
A I KL E+ +
Sbjct: 466 AQGRIYGKLKEENFF 480
Score = 76 (31.8 bits), Expect = 6.9e-05, Sum P(3) = 6.9e-05
Identities = 21/92 (22%), Positives = 37/92 (40%)
Query: 24 KSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDR 83
K T ++ L N G +IGK G + + + +I +S + +R
Sbjct: 266 KEAKDTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPER 325
Query: 84 IIMISGTIDEILRAVDLVIDKLLTELHAEDQA 115
I + G I+ RA ++ K+ E + D A
Sbjct: 326 TITVKGAIENCCRAEQEIMKKV-REAYENDVA 356
Score = 66 (28.3 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 16/60 (26%), Positives = 33/60 (55%)
Query: 268 IGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
+G ++G+ G++I ++S+ + A IK++ + R V I+GP + A+ I K+
Sbjct: 417 VGAIIGKKGQHIKQLSRFASASIKIAPPET--PDSKVRMVIITGPPEAQFKAQGRIYGKL 474
Score = 54 (24.1 bits), Expect = 8.0e-11, Sum P(2) = 8.0e-11
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 239 YGPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKV 292
YG + F K++ I V G V+G+GG+ + E+ ++ A + V
Sbjct: 471 YG-KLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVV 523
>UNIPROTKB|I3L9X2 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 CTD:10642 GeneTree:ENSGT00530000063171 OMA:EQETVHV
EMBL:FP312864 RefSeq:XP_003358128.1 Ensembl:ENSSSCT00000022825
GeneID:100620940 KEGG:ssc:100620940 Uniprot:I3L9X2
Length = 577
Score = 166 (63.5 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 45/159 (28%), Positives = 80/159 (50%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
+R LV GA+IGK G+TI + Q+ ++I + R G ++ I + T +
Sbjct: 198 LRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKEN--AGAAEKAISVHSTPEGCSS 255
Query: 97 AVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIK 156
A ++++ + E AD+V L+++ N+ G +IGK G +K D++ I
Sbjct: 256 ACKMILEIMHKEAKDTKTADEV----PLKILAHNNFVGRLIGKEGRNLKKVEQDTETKIT 311
Query: 157 ISRL-DHSYYGLNDRLVTLTGTLDEQMRALELILLKLSE 194
IS L D + Y +R +T+ G ++ RA + I+ K+ E
Sbjct: 312 ISSLQDLTLYN-PERTITVKGAIENCCRAEQEIMKKVRE 349
Score = 123 (48.4 bits), Expect = 0.00013, P = 0.00013
Identities = 41/154 (26%), Positives = 72/154 (46%)
Query: 6 SSYVPSPDVHGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSG 65
SS VP P AP S P ++ + F+ + + GA+IGK G I +
Sbjct: 380 SSAVPPPP-SSVTGAAPYSSFMQAPEQEMVQV-FIPAQAV-GAIIGKKGQHIKQLSRFAS 436
Query: 66 ARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLR 125
A I+++ P + R+++I+G + +A + KL E + ++V +T +R
Sbjct: 437 ASIKIAPPET--PDSKVRMVIITGPPEAQFKAQGRIYGKLKEE-NFFGPKEEVKLETHIR 493
Query: 126 LIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISR 159
VP S+ G +IGK G T+ + + A + + R
Sbjct: 494 --VPASAAGRVIGKGGKTVNELQNLTAAEVVVPR 525
Score = 79 (32.9 bits), Expect = 6.9e-05, Sum P(3) = 6.9e-05
Identities = 23/75 (30%), Positives = 39/75 (52%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMR 183
+++ +P + G+IIGK G IK + A IKI+ + + R+V +TG + Q +
Sbjct: 408 VQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKV--RMVIITGPPEAQFK 465
Query: 184 ALELILLKLSEDTLY 198
A I KL E+ +
Sbjct: 466 AQGRIYGKLKEENFF 480
Score = 76 (31.8 bits), Expect = 6.9e-05, Sum P(3) = 6.9e-05
Identities = 21/92 (22%), Positives = 37/92 (40%)
Query: 24 KSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDR 83
K T ++ L N G +IGK G + + + +I +S + +R
Sbjct: 266 KEAKDTKTADEVPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPER 325
Query: 84 IIMISGTIDEILRAVDLVIDKLLTELHAEDQA 115
I + G I+ RA ++ K+ E + D A
Sbjct: 326 TITVKGAIENCCRAEQEIMKKV-REAYENDVA 356
Score = 66 (28.3 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 16/60 (26%), Positives = 33/60 (55%)
Query: 268 IGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
+G ++G+ G++I ++S+ + A IK++ + R V I+GP + A+ I K+
Sbjct: 417 VGAIIGKKGQHIKQLSRFASASIKIAPPET--PDSKVRMVIITGPPEAQFKAQGRIYGKL 474
Score = 54 (24.1 bits), Expect = 8.0e-11, Sum P(2) = 8.0e-11
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 239 YGPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKV 292
YG + F K++ I V G V+G+GG+ + E+ ++ A + V
Sbjct: 471 YG-KLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVV 523
>UNIPROTKB|J9P8W9 [details] [associations]
symbol:IGF2BP3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13197 GeneTree:ENSGT00530000063171 CTD:10643
OMA:EAQDTKF EMBL:AAEX03009368 EMBL:AAEX03009369 EMBL:AAEX03009370
RefSeq:XP_539474.2 Ensembl:ENSCAFT00000046043 GeneID:482357
KEGG:cfa:482357 Uniprot:J9P8W9
Length = 579
Score = 159 (61.0 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 49/181 (27%), Positives = 82/181 (45%)
Query: 16 GKRSTAPVKSLSSDPTEKPTYI--RFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRS 73
G+R ++ S S +KP + R LV GA+IGK G+TI + Q+ ++I + R
Sbjct: 175 GQRGSSRQGSPGSVSKQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRK 234
Query: 74 HEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSC 133
G ++ I I T + +L +H E Q + L+++ N+
Sbjct: 235 EN--AGAAEKSITILSTPE----GTSAACKSILEIMHKEAQDIKFTEEIPLKILAHNNFV 288
Query: 134 GSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLS 193
G +IGK G +K D+ I IS L +R +T+ G ++ +A E I+ K+
Sbjct: 289 GRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITVKGNVETCAKAEEEIMKKIR 348
Query: 194 E 194
E
Sbjct: 349 E 349
Score = 117 (46.2 bits), Expect = 0.00062, P = 0.00062
Identities = 45/174 (25%), Positives = 79/174 (45%)
Query: 6 SSYVPSPDVHGKRS--TAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQ 63
+S +P P G S T P TE + + GA+IGK G I
Sbjct: 379 TSGMPPP-TSGPPSAMTPPYPQFEQSETET---VHLFIPALSVGAIIGKQGQHIKQLSRF 434
Query: 64 SGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTK 123
+GA I+++ + P R+++I+G + +A + K+ E + ++V +
Sbjct: 435 AGASIKIAPAEA--PDAKVRMVIITGPPEAQFKAQGRIYGKIKEENFVSPK-EEVKLEAH 491
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVT-LTG 176
+R VP+ + G +IGK G T+ + S A + + R D + ND++V +TG
Sbjct: 492 IR--VPSFAAGRVIGKGGKTVNELQNLSSAEVVVPR-DQTP-DENDQVVVKITG 541
Score = 74 (31.1 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 18/76 (23%), Positives = 39/76 (51%)
Query: 252 KDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISG 311
+ T ++ + + +G ++G+ G++I ++S+ +GA IK++ R V I+G
Sbjct: 401 EQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEA--PDAKVRMVIITG 458
Query: 312 PQRSIRTAESMIMQKV 327
P + A+ I K+
Sbjct: 459 PPEAQFKAQGRIYGKI 474
Score = 58 (25.5 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 21/87 (24%), Positives = 38/87 (43%)
Query: 239 YGPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDF 298
YG + F + K++ I V G V+G+GG+ + E+ +S A + V R
Sbjct: 471 YG-KIKEENFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVVP-RDQT 528
Query: 299 FSGTSERKVTISGPQRSIRTAESMIMQ 325
+ V I+G + + A+ I +
Sbjct: 529 PDENDQVVVKITGHFYACQVAQRKIQE 555
>UNIPROTKB|O00425 [details] [associations]
symbol:IGF2BP3 "Insulin-like growth factor 2 mRNA-binding
protein 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006412 "translation" evidence=TAS] [GO:0009653
"anatomical structure morphogenesis" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0045182 "translation regulator
activity" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0042035
"regulation of cytokine biosynthetic process" evidence=IC]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 Reactome:REACT_116125 GO:GO:0017148 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027
GO:GO:0003730 GO:GO:0042035 GO:GO:0009653 EMBL:AC005082
HOVERGEN:HBG052725 KO:K13197 eggNOG:NOG249985 HOGENOM:HOG000000675
OrthoDB:EOG405S0T CTD:10643 OMA:EAQDTKF EMBL:U76705 EMBL:U97188
EMBL:BX640800 EMBL:BX648488 EMBL:AC021876 EMBL:AC079780
EMBL:BC065269 IPI:IPI00165467 IPI:IPI00658000 RefSeq:NP_006538.2
UniGene:Hs.700696 PDB:2E44 PDBsum:2E44 ProteinModelPortal:O00425
SMR:O00425 IntAct:O00425 STRING:O00425 PhosphoSite:O00425
PaxDb:O00425 PRIDE:O00425 Ensembl:ENST00000258729 GeneID:10643
KEGG:hsa:10643 UCSC:uc003swf.3 UCSC:uc003swg.3
GeneCards:GC07M023316 HGNC:HGNC:28868 HPA:HPA002037 MIM:608259
neXtProt:NX_O00425 PharmGKB:PA128394576 InParanoid:O00425
PhylomeDB:O00425 ChiTaRS:Igf2bp3 EvolutionaryTrace:O00425
GenomeRNAi:10643 NextBio:40451 ArrayExpress:O00425 Bgee:O00425
CleanEx:HS_IGF2BP3 CleanEx:HS_IMP3 Genevestigator:O00425
Uniprot:O00425
Length = 579
Score = 159 (61.0 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 49/181 (27%), Positives = 82/181 (45%)
Query: 16 GKRSTAPVKSLSSDPTEKPTYI--RFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRS 73
G+R ++ S S +KP + R LV GA+IGK G+TI + Q+ ++I + R
Sbjct: 175 GQRGSSRQGSPGSVSKQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRK 234
Query: 74 HEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSC 133
G ++ I I T + +L +H E Q + L+++ N+
Sbjct: 235 EN--AGAAEKSITILSTPE----GTSAACKSILEIMHKEAQDIKFTEEIPLKILAHNNFV 288
Query: 134 GSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLS 193
G +IGK G +K D+ I IS L +R +T+ G ++ +A E I+ K+
Sbjct: 289 GRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITVKGNVETCAKAEEEIMKKIR 348
Query: 194 E 194
E
Sbjct: 349 E 349
Score = 117 (46.2 bits), Expect = 0.00062, P = 0.00062
Identities = 45/174 (25%), Positives = 79/174 (45%)
Query: 6 SSYVPSPDVHGKRS--TAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQ 63
+S +P P G S T P TE + + GA+IGK G I
Sbjct: 379 TSGMPPP-TSGPPSAMTPPYPQFEQSETET---VHLFIPALSVGAIIGKQGQHIKQLSRF 434
Query: 64 SGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTK 123
+GA I+++ + P R+++I+G + +A + K+ E + ++V +
Sbjct: 435 AGASIKIAPAEA--PDAKVRMVIITGPPEAQFKAQGRIYGKIKEENFVSPK-EEVKLEAH 491
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVT-LTG 176
+R VP+ + G +IGK G T+ + S A + + R D + ND++V +TG
Sbjct: 492 IR--VPSFAAGRVIGKGGKTVNELQNLSSAEVVVPR-DQTP-DENDQVVVKITG 541
Score = 74 (31.1 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 18/76 (23%), Positives = 39/76 (51%)
Query: 252 KDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISG 311
+ T ++ + + +G ++G+ G++I ++S+ +GA IK++ R V I+G
Sbjct: 401 EQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEA--PDAKVRMVIITG 458
Query: 312 PQRSIRTAESMIMQKV 327
P + A+ I K+
Sbjct: 459 PPEAQFKAQGRIYGKI 474
Score = 58 (25.5 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 21/87 (24%), Positives = 38/87 (43%)
Query: 239 YGPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDF 298
YG + F + K++ I V G V+G+GG+ + E+ +S A + V R
Sbjct: 471 YG-KIKEENFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVVP-RDQT 528
Query: 299 FSGTSERKVTISGPQRSIRTAESMIMQ 325
+ V I+G + + A+ I +
Sbjct: 529 PDENDQVVVKITGHFYACQVAQRKIQE 555
>TAIR|locus:2831364 [details] [associations]
symbol:AT4G18375 "AT4G18375" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 EMBL:AL161548 EMBL:AL021710
KO:K13162 EMBL:AY133701 EMBL:BT001108 IPI:IPI00539414
IPI:IPI00548636 RefSeq:NP_193572.1 RefSeq:NP_849406.1
UniGene:At.32914 ProteinModelPortal:P58223 SMR:P58223
MEROPS:S01.441 PaxDb:P58223 EnsemblPlants:AT4G18375.2 GeneID:827566
KEGG:ath:AT4G18375 GeneFarm:2264 TAIR:At4g18375 eggNOG:NOG297635
HOGENOM:HOG000084632 InParanoid:P58223 OMA:ANICISK PhylomeDB:P58223
ProtClustDB:CLSN2686050 Genevestigator:P58223 GermOnline:AT4G18375
Uniprot:P58223
Length = 606
Score = 189 (71.6 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 85/302 (28%), Positives = 142/302 (47%)
Query: 39 FLVSNPLAGA--VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTI--DEI 94
F V PL VIGKGGSTI + SG+ I+++ S G + +I+++ T D++
Sbjct: 314 FKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKC-GDDECVIIVTATESPDDM 372
Query: 95 LR-AVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQA 153
AV+ V+ LL E ++ A++V K++L+V + G +IGK+G+ I + A
Sbjct: 373 KSMAVEAVL--LLQEYINDEDAENV----KMQLLVSSKVIGCVIGKSGSVINEIRKRTNA 426
Query: 154 VIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQ----TMTVPY-TY 208
I IS+ G D LV ++G + AL I+L+L ED L + T P T
Sbjct: 427 NICISK------GKKDDLVEVSGEVSSVRDALIQIVLRLREDVLGDKDSVATRKPPARTD 480
Query: 209 AGVFFSGF----HGMPYGXXXXXXXXXXHNTAAH-YGPNMGGRK--FQNNKDDRTNSLTI 261
F SG + +P H + G N+ G + + +++L I
Sbjct: 481 NCSFLSGSSNAGYTLPSFMSSMASTSGFHGYGSFPAGDNVLGSTGPYSYGRLPSSSALEI 540
Query: 262 GVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAES 321
+ + V+G+GG N+ I +ISGA I++S + + +SG +R AE+
Sbjct: 541 LIPAHAMSKVMGKGGGNLENIRRISGAMIEISASK---TSHGDHIALLSGTLEQMRCAEN 597
Query: 322 MI 323
++
Sbjct: 598 LV 599
>UNIPROTKB|J9P1I9 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048
EMBL:AAEX03006837 EMBL:AAEX03006838 Ensembl:ENSCAFT00000048747
Uniprot:J9P1I9
Length = 487
Score = 142 (55.0 bits), Expect = 5.7e-12, Sum P(2) = 5.7e-12
Identities = 41/154 (26%), Positives = 76/154 (49%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGT---IDEIL 95
F V + + G +IG+GG I+ Q++SG +IQ++ P +R +++GT I++
Sbjct: 82 FKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIP---ERPCVLTGTPESIEQAK 138
Query: 96 RAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVI 155
R + ++D+ + D G T +++P S G +IGK G TIK + + V
Sbjct: 139 RLLGQIVDRCRNGPGFHNDID--GNSTIQEILIPASKVGLVIGKGGETIKQ-LQERTGVK 195
Query: 156 KISRLDHSYYGLNDRLVTLTGTLDEQMRALELIL 189
+ D D+ + +TG + +A E++L
Sbjct: 196 MVMIQDGPLPTGADKPLRITGDPFKVQQAREMVL 229
Score = 113 (44.8 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 42/164 (25%), Positives = 76/164 (46%)
Query: 35 TYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEI 94
T L+ G VIGKGG TI Q ++G ++ + + P D+ + I+G ++
Sbjct: 163 TIQEILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPL-PTGADKPLRITGDPFKV 221
Query: 95 LRAVDLVIDKLLTELHAEDQADDVGTKT---------KLRLIVPNSSCGSIIGKAGATIK 145
+A ++V++ ++ E +DQAD G + + + VP + G +IG+ G IK
Sbjct: 222 QQAREMVLE-IIRE---KDQADFRGVRGDFSARVGGGSIEVSVPRFAVGIVIGRNGEMIK 277
Query: 146 SFMDDSQAVIKISRLDHSYYGLN-DRLVTLTGTLDEQMRALELI 188
+D+ I+ D G++ +R + G D A +I
Sbjct: 278 KIQNDAGVRIQFKPDD----GISPERAAQVMGPPDRCQHAAHVI 317
Score = 90 (36.7 bits), Expect = 5.7e-12, Sum P(2) = 5.7e-12
Identities = 24/73 (32%), Positives = 37/73 (50%)
Query: 259 LTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRT 318
+T V + G V+G+GG NI I+Q SGA +++ + + R TI G + I
Sbjct: 357 ITYTVPADKCGLVIGKGGDNIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGIPQQIEV 416
Query: 319 AESMIMQKVAYAS 331
A +I +KV S
Sbjct: 417 ARHLIDEKVGGTS 429
Score = 73 (30.8 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 258 SLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIR 317
S+ + V +G V+GR G I +I +G RI+ D S ER + GP +
Sbjct: 255 SIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKP-DDGIS--PERAAQVMGPPDRCQ 311
Query: 318 TAESMIMQKVAYASDR 333
A +I + + A +R
Sbjct: 312 HAAHVINELILTAQER 327
>UNIPROTKB|F1NYJ3 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:AADN02026565
EMBL:AADN02026566 EMBL:AADN02026567 EMBL:AADN02026568
EMBL:AADN02026569 EMBL:AADN02026570 IPI:IPI00819889
Ensembl:ENSGALT00000006277 ArrayExpress:F1NYJ3 Uniprot:F1NYJ3
Length = 508
Score = 140 (54.3 bits), Expect = 6.9e-12, Sum P(2) = 6.9e-12
Identities = 42/154 (27%), Positives = 75/154 (48%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGT---IDEIL 95
F V + + G +IG+GG I+ Q +SG +IQ++ P +R +++GT I++
Sbjct: 71 FKVPDKMVGFIIGRGGEQISRIQIESGCKIQIAPDSGGMP---ERPCVLTGTPESIEQAK 127
Query: 96 RAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVI 155
R + ++D+ + D G T +++P S G +IGK G TIK + + V
Sbjct: 128 RLLGQIVDRCRNGPGFHNDVD--GNSTIQEILIPASKVGLVIGKGGETIKQ-LQERTGVK 184
Query: 156 KISRLDHSYYGLNDRLVTLTGTLDEQMRALELIL 189
I D D+ + +TG + +A E++L
Sbjct: 185 MIMIQDGPMPTGADKPLRITGDAFKVQQAREMVL 218
Score = 120 (47.3 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 43/171 (25%), Positives = 79/171 (46%)
Query: 28 SDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMI 87
+D T L+ G VIGKGG TI Q ++G ++ + + P D+ + I
Sbjct: 145 NDVDGNSTIQEILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPM-PTGADKPLRI 203
Query: 88 SGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKT---------KLRLIVPNSSCGSIIG 138
+G ++ +A ++V++ ++ E +DQAD G + + + VP + G +IG
Sbjct: 204 TGDAFKVQQAREMVLE-IIRE---KDQADFRGVRNDFSSRMGGGSIEVSVPRFAVGIVIG 259
Query: 139 KAGATIKSFMDDSQAVIKISRLDHSYYGLN-DRLVTLTGTLDEQMRALELI 188
+ G IK +D+ I+ D G++ +R+ + G D A +I
Sbjct: 260 RNGEMIKKIQNDAGVRIQFKPDD----GISPERVAQVMGLPDRCQHAAHII 306
Score = 92 (37.4 bits), Expect = 6.9e-12, Sum P(2) = 6.9e-12
Identities = 24/73 (32%), Positives = 36/73 (49%)
Query: 259 LTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRT 318
+T V + G V+G+GG NI I+Q SGA +++ + R TI G + I
Sbjct: 346 ITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPGVRIFTIRGVPQQIEL 405
Query: 319 AESMIMQKVAYAS 331
A +I +KV S
Sbjct: 406 ARHLIDEKVGGTS 418
Score = 64 (27.6 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 23/77 (29%), Positives = 35/77 (45%)
Query: 258 SLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISG-PQRSI 316
S+ + V +G V+GR G I +I +G RI+ D S ER + G P R
Sbjct: 244 SIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKP-DDGIS--PERVAQVMGLPDRCQ 300
Query: 317 RTAESMIMQKVAYASDR 333
A +I + + A +R
Sbjct: 301 HAAH-IISELILTAQER 316
>UNIPROTKB|F8VRG9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022480
ProteinModelPortal:F8VRG9 SMR:F8VRG9 PRIDE:F8VRG9
Ensembl:ENST00000552083 ArrayExpress:F8VRG9 Bgee:F8VRG9
Uniprot:F8VRG9
Length = 323
Score = 114 (45.2 bits), Expect = 7.4e-12, Sum P(3) = 7.4e-12
Identities = 26/69 (37%), Positives = 46/69 (66%)
Query: 255 RTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQR 314
+T S + + ++ IG ++GR G I EI Q+SGA+IK+++ + G+++R+VTI+G
Sbjct: 244 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVE---GSTDRQVTITGSAA 300
Query: 315 SIRTAESMI 323
SI A+ +I
Sbjct: 301 SISLAQYLI 309
Score = 103 (41.3 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 27 SSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIM 86
S+ + P +R +V G++IGKGG I + + +GA++Q++ + P +T+R I
Sbjct: 51 STAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG--DMLPNSTERAIT 108
Query: 87 ISGTIDEILRAV 98
I+G I+ V
Sbjct: 109 IAGIPQSIIECV 120
Score = 102 (41.0 bits), Expect = 7.4e-12, Sum P(3) = 7.4e-12
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKIS--RLDHSYYGLNDRLVTLTGTLDEQ 181
LRL+VP S CGS+IGK G IK + + A ++++ L +S +R +T+ G
Sbjct: 61 LRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNS----TERAITIAGIPQSI 116
Query: 182 MRALELILLKLSEDTLYSQTMTVPY 206
+ ++ I + + E + +T+PY
Sbjct: 117 IECVKQICVVMLESP--PKGVTIPY 139
Score = 99 (39.9 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 29/75 (38%), Positives = 38/75 (50%)
Query: 122 TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQ 181
T L +PN G IIG+ GA I S A IKI+ + G DR VT+TG+
Sbjct: 246 TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIA---NPVEGSTDRQVTITGSAASI 302
Query: 182 MRALELILLKLSEDT 196
A LI ++LS +T
Sbjct: 303 SLAQYLINVRLSSET 317
Score = 56 (24.8 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDD 150
+RL++ GSIIGK G ++K ++
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREE 42
Score = 47 (21.6 bits), Expect = 7.4e-12, Sum P(3) = 7.4e-12
Identities = 11/50 (22%), Positives = 24/50 (48%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIM 86
IR L+ G++IGK G ++ + + + + + P T R+++
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREEDISSSMTNSTAASRPPVTLRLVV 65
>UNIPROTKB|F1PEW1 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048
OMA:AAPHQNT EMBL:AAEX03006837 EMBL:AAEX03006838
Ensembl:ENSCAFT00000031728 Uniprot:F1PEW1
Length = 547
Score = 142 (55.0 bits), Expect = 8.2e-12, Sum P(2) = 8.2e-12
Identities = 41/154 (26%), Positives = 76/154 (49%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGT---IDEIL 95
F V + + G +IG+GG I+ Q++SG +IQ++ P +R +++GT I++
Sbjct: 82 FKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIP---ERPCVLTGTPESIEQAK 138
Query: 96 RAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVI 155
R + ++D+ + D G T +++P S G +IGK G TIK + + V
Sbjct: 139 RLLGQIVDRCRNGPGFHNDID--GNSTIQEILIPASKVGLVIGKGGETIKQ-LQERTGVK 195
Query: 156 KISRLDHSYYGLNDRLVTLTGTLDEQMRALELIL 189
+ D D+ + +TG + +A E++L
Sbjct: 196 MVMIQDGPLPTGADKPLRITGDPFKVQQAREMVL 229
Score = 113 (44.8 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 42/164 (25%), Positives = 76/164 (46%)
Query: 35 TYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEI 94
T L+ G VIGKGG TI Q ++G ++ + + P D+ + I+G ++
Sbjct: 163 TIQEILIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPL-PTGADKPLRITGDPFKV 221
Query: 95 LRAVDLVIDKLLTELHAEDQADDVGTKT---------KLRLIVPNSSCGSIIGKAGATIK 145
+A ++V++ ++ E +DQAD G + + + VP + G +IG+ G IK
Sbjct: 222 QQAREMVLE-IIRE---KDQADFRGVRGDFSARVGGGSIEVSVPRFAVGIVIGRNGEMIK 277
Query: 146 SFMDDSQAVIKISRLDHSYYGLN-DRLVTLTGTLDEQMRALELI 188
+D+ I+ D G++ +R + G D A +I
Sbjct: 278 KIQNDAGVRIQFKPDD----GISPERAAQVMGPPDRCQHAAHVI 317
Score = 90 (36.7 bits), Expect = 8.2e-12, Sum P(2) = 8.2e-12
Identities = 24/73 (32%), Positives = 37/73 (50%)
Query: 259 LTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRT 318
+T V + G V+G+GG NI I+Q SGA +++ + + R TI G + I
Sbjct: 357 ITYTVPADKCGLVIGKGGDNIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGIPQQIEV 416
Query: 319 AESMIMQKVAYAS 331
A +I +KV S
Sbjct: 417 ARHLIDEKVGGTS 429
Score = 73 (30.8 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 258 SLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIR 317
S+ + V +G V+GR G I +I +G RI+ D S ER + GP +
Sbjct: 255 SIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKP-DDGIS--PERAAQVMGPPDRCQ 311
Query: 318 TAESMIMQKVAYASDR 333
A +I + + A +R
Sbjct: 312 HAAHVINELILTAQER 327
>UNIPROTKB|F1NGC0 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723
GeneTree:ENSGT00650000093048 OMA:AAPHQNT EMBL:AADN02026565
EMBL:AADN02026566 EMBL:AADN02026567 EMBL:AADN02026568
EMBL:AADN02026569 EMBL:AADN02026570 IPI:IPI00578263
Ensembl:ENSGALT00000039554 ArrayExpress:F1NGC0 Uniprot:F1NGC0
Length = 539
Score = 140 (54.3 bits), Expect = 8.3e-12, Sum P(2) = 8.3e-12
Identities = 42/154 (27%), Positives = 75/154 (48%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGT---IDEIL 95
F V + + G +IG+GG I+ Q +SG +IQ++ P +R +++GT I++
Sbjct: 100 FKVPDKMVGFIIGRGGEQISRIQIESGCKIQIAPDSGGMP---ERPCVLTGTPESIEQAK 156
Query: 96 RAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVI 155
R + ++D+ + D G T +++P S G +IGK G TIK + + V
Sbjct: 157 RLLGQIVDRCRNGPGFHNDVD--GNSTIQEILIPASKVGLVIGKGGETIKQ-LQERTGVK 213
Query: 156 KISRLDHSYYGLNDRLVTLTGTLDEQMRALELIL 189
I D D+ + +TG + +A E++L
Sbjct: 214 MIMIQDGPMPTGADKPLRITGDAFKVQQAREMVL 247
Score = 120 (47.3 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 43/171 (25%), Positives = 79/171 (46%)
Query: 28 SDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMI 87
+D T L+ G VIGKGG TI Q ++G ++ + + P D+ + I
Sbjct: 174 NDVDGNSTIQEILIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDGPM-PTGADKPLRI 232
Query: 88 SGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKT---------KLRLIVPNSSCGSIIG 138
+G ++ +A ++V++ ++ E +DQAD G + + + VP + G +IG
Sbjct: 233 TGDAFKVQQAREMVLE-IIRE---KDQADFRGVRNDFSSRMGGGSIEVSVPRFAVGIVIG 288
Query: 139 KAGATIKSFMDDSQAVIKISRLDHSYYGLN-DRLVTLTGTLDEQMRALELI 188
+ G IK +D+ I+ D G++ +R+ + G D A +I
Sbjct: 289 RNGEMIKKIQNDAGVRIQFKPDD----GISPERVAQVMGLPDRCQHAAHII 335
Score = 92 (37.4 bits), Expect = 8.3e-12, Sum P(2) = 8.3e-12
Identities = 24/73 (32%), Positives = 36/73 (49%)
Query: 259 LTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRT 318
+T V + G V+G+GG NI I+Q SGA +++ + R TI G + I
Sbjct: 375 ITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPGVRIFTIRGVPQQIEL 434
Query: 319 AESMIMQKVAYAS 331
A +I +KV S
Sbjct: 435 ARHLIDEKVGGTS 447
Score = 64 (27.6 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 23/77 (29%), Positives = 35/77 (45%)
Query: 258 SLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISG-PQRSI 316
S+ + V +G V+GR G I +I +G RI+ D S ER + G P R
Sbjct: 273 SIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKP-DDGIS--PERVAQVMGLPDRCQ 329
Query: 317 RTAESMIMQKVAYASDR 333
A +I + + A +R
Sbjct: 330 HAAH-IISELILTAQER 345
>UNIPROTKB|Q9GZT1 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IDA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IDA] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=IDA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007050 "cell
cycle arrest" evidence=IDA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0008630
GO:GO:0006977 EMBL:CH471055 GO:GO:0007050 GO:GO:0003723
EMBL:AC115284 HOGENOM:HOG000182823 HOVERGEN:HBG053520
UniGene:Hs.20930 HGNC:HGNC:8652 NextBio:62848 EMBL:AF257770
EMBL:AF257772 IPI:IPI00006997 HSSP:Q9UNW9 SMR:Q9GZT1 STRING:Q9GZT1
Ensembl:ENST00000395014 UCSC:uc003dcc.2 Uniprot:Q9GZT1
Length = 424
Score = 119 (46.9 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 46/164 (28%), Positives = 71/164 (43%)
Query: 169 DRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPY----TYAGVFFSGFHGMP---- 220
+R VT++G D + + I + E + T+PY + V S G
Sbjct: 168 ERAVTVSGVPDAIILCVRQICAVILESP--PKGATIPYHPSLSLGTVLLSANQGFSVQGQ 225
Query: 221 YGXXXXXXXXXXHNTAAHYGPNMGGRKFQN-NKDDRTNSLTIGVADEHIGFVVGRGGRNI 279
YG ++H P + +T+S V ++ IG V+GR G I
Sbjct: 226 YGAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKI 285
Query: 280 MEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMI 323
EI Q+SGA IK+ ++ + G ER VTI+G SI A+ +I
Sbjct: 286 SEIRQMSGAHIKIGNQAE---GAGERHVTITGSPVSIALAQYLI 326
Score = 112 (44.5 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 32/89 (35%), Positives = 45/89 (50%)
Query: 63 QSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAED-QADDVGTK 121
QS ARI +S +RI I+G+ + AV ++ KL +L A +V
Sbjct: 12 QSSARITISEG-----SCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRP 66
Query: 122 -TKLRLIVPNSSCGSIIGKAGATIKSFMD 149
LRL++P S CGS+IGKAG IK +
Sbjct: 67 PVTLRLVIPASQCGSLIGKAGTKIKEIRE 95
Score = 58 (25.5 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 284 QISGARIKVSDRGDFFSGTSERKVTISG 311
Q +GA+++V+ GD ++ER VT+SG
Sbjct: 150 QTTGAQVQVA--GDLLPNSTERAVTVSG 175
Score = 55 (24.4 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 64 SGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAV 98
+GA++Q++ + P +T+R + +SG D I+ V
Sbjct: 152 TGAQVQVAG--DLLPNSTERAVTVSGVPDAIILCV 184
Score = 49 (22.3 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 34 PTYIRFLVSNPLAGAVIGKGGSTINDFQSQSG 65
P +R ++ G++IGK G+ I + + G
Sbjct: 67 PVTLRLVIPASQCGSLIGKAGTKIKEIREVRG 98
>UNIPROTKB|Q9Y6M1 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0009653
"anatomical structure morphogenesis" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005856 "cytoskeleton"
evidence=IDA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=ISS]
[GO:0045182 "translation regulator activity" evidence=ISS]
[GO:0042035 "regulation of cytokine biosynthetic process"
evidence=IC] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 Reactome:REACT_116125 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027
GO:GO:0003730 GO:GO:0042035 GO:GO:0009653 HOVERGEN:HBG052725
eggNOG:NOG249985 HOGENOM:HOG000000675 EMBL:AF057352 EMBL:EU408701
EMBL:EU408702 EMBL:EU408703 EMBL:AC016961 EMBL:AC108670
EMBL:BC021290 IPI:IPI00179713 IPI:IPI00180983 IPI:IPI00743914
IPI:IPI00922068 IPI:IPI00953576 RefSeq:NP_001007226.1
RefSeq:NP_006539.3 UniGene:Hs.35354 PDB:2CQH PDBsum:2CQH
ProteinModelPortal:Q9Y6M1 SMR:Q9Y6M1 IntAct:Q9Y6M1 STRING:Q9Y6M1
PhosphoSite:Q9Y6M1 DMDM:224471831 PaxDb:Q9Y6M1 PRIDE:Q9Y6M1
DNASU:10644 Ensembl:ENST00000346192 Ensembl:ENST00000382199
Ensembl:ENST00000421047 GeneID:10644 KEGG:hsa:10644 UCSC:uc003fpo.3
UCSC:uc003fpp.3 UCSC:uc010hyi.3 UCSC:uc010hyj.3 UCSC:uc010hyl.3
CTD:10644 GeneCards:GC03M185361 HGNC:HGNC:28867 HPA:CAB017126
MIM:608289 neXtProt:NX_Q9Y6M1 PharmGKB:PA128394577
OrthoDB:EOG4FBHSJ ChiTaRS:IGF2BP2 EvolutionaryTrace:Q9Y6M1
GenomeRNAi:10644 NextBio:40455 ArrayExpress:Q9Y6M1 Bgee:Q9Y6M1
CleanEx:HS_IGF2BP2 Genevestigator:Q9Y6M1 GermOnline:ENSG00000073792
GO:GO:0044430 Uniprot:Q9Y6M1
Length = 599
Score = 151 (58.2 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 47/181 (25%), Positives = 81/181 (44%)
Query: 15 HGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSH 74
H R +S + +R LV GA+IGK G TI + Q+ +R+ + R
Sbjct: 174 HSSREQGHAPGGTSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKE 233
Query: 75 EFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCG 134
G ++ + I T + A ++++ + E A+++ L+++ N G
Sbjct: 234 N--SGAAEKPVTIHATPEGTSEACRMILEIMQKEADETKLAEEI----PLKILAHNGLVG 287
Query: 135 SIIGKAGATIKSFMDDSQAVIKISRL-DHSYYGLNDRLVTLTGTLDEQMRALELILLKLS 193
+IGK G +K ++ I IS L D S Y +R +T+ GT++ A I+ KL
Sbjct: 288 RLIGKEGRNLKKIEHETGTKITISSLQDLSIYN-PERTITVKGTVEACASAEIEIMKKLR 346
Query: 194 E 194
E
Sbjct: 347 E 347
Score = 125 (49.1 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 39/157 (24%), Positives = 73/157 (46%)
Query: 3 TNESSYVPSPDVHGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQS 62
T S Y S H P S P ++ + + GA+IGK G+ I
Sbjct: 400 TTHSGYFSSLYPH--HQFGPFPHHHSYPEQE--IVNLFIPTQAVGAIIGKKGAHIKQLAR 455
Query: 63 QSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKT 122
+GA I+++ + P ++R+++I+G + +A + KL E + + ++V +
Sbjct: 456 FAGASIKIAPAEG--PDVSERMVIITGPPEAQFKAQGRIFGKLKEE-NFFNPKEEVKLEA 512
Query: 123 KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISR 159
+R VP+S+ G +IGK G T+ + + A + + R
Sbjct: 513 HIR--VPSSTAGRVIGKGGKTVNELQNLTSAEVIVPR 547
Score = 99 (39.9 bits), Expect = 4.8e-09, Sum P(3) = 4.8e-09
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMR 183
+ L +P + G+IIGK GA IK + A IKI+ + +++R+V +TG + Q +
Sbjct: 430 VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGP--DVSERMVIITGPPEAQFK 487
Query: 184 ALELILLKLSEDTLYS 199
A I KL E+ ++
Sbjct: 488 AQGRIFGKLKEENFFN 503
Score = 88 (36.0 bits), Expect = 4.8e-09, Sum P(3) = 4.8e-09
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
++ L N L G +IGK G + + ++G +I +S + +R I + GT+ E
Sbjct: 277 LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTV-EACA 335
Query: 97 AVDLVIDKLLTELHAED 113
+ ++ I K L E D
Sbjct: 336 SAEIEIMKKLREAFEND 352
Score = 80 (33.2 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 18/65 (27%), Positives = 36/65 (55%)
Query: 263 VADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESM 322
+ + +G ++G+ G +I ++++ +GA IK++ SER V I+GP + A+
Sbjct: 434 IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG--PDVSERMVIITGPPEAQFKAQGR 491
Query: 323 IMQKV 327
I K+
Sbjct: 492 IFGKL 496
Score = 62 (26.9 bits), Expect = 4.8e-09, Sum P(3) = 4.8e-09
Identities = 22/80 (27%), Positives = 36/80 (45%)
Query: 248 FQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKV 307
F N K++ I V G V+G+GG+ + E+ ++ A + V R E V
Sbjct: 501 FFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVP-RDQTPDENEEVIV 559
Query: 308 TISGPQRSIRTAESMIMQKV 327
I G + +TA+ I + V
Sbjct: 560 RIIGHFFASQTAQRKIREIV 579
Score = 45 (20.9 bits), Expect = 9.2e-05, Sum P(3) = 9.2e-05
Identities = 19/72 (26%), Positives = 33/72 (45%)
Query: 44 PLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTD---RIIMISGTIDEILRAVDL 100
PLAG V+ K G D+ Q+ A R+ E G + +I+ + ++ + LR+ +
Sbjct: 29 PLAGQVLLKSGYAFVDYPDQNWA----IRAIETLSGKVELHGKIMEVDYSVSKKLRSRKI 84
Query: 101 VIDKLLTELHAE 112
I + L E
Sbjct: 85 QIRNIPPHLQWE 96
>UNIPROTKB|F8W930 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC016961 EMBL:AC108670
IPI:IPI00953576 HGNC:HGNC:28867 ChiTaRS:IGF2BP2 OMA:KQQEQKH
ProteinModelPortal:F8W930 SMR:F8W930 PRIDE:F8W930
Ensembl:ENST00000457616 UCSC:uc003fpq.3 ArrayExpress:F8W930
Bgee:F8W930 Uniprot:F8W930
Length = 605
Score = 151 (58.2 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 47/181 (25%), Positives = 81/181 (44%)
Query: 15 HGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSH 74
H R +S + +R LV GA+IGK G TI + Q+ +R+ + R
Sbjct: 180 HSSREQGHAPGGTSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKE 239
Query: 75 EFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCG 134
G ++ + I T + A ++++ + E A+++ L+++ N G
Sbjct: 240 N--SGAAEKPVTIHATPEGTSEACRMILEIMQKEADETKLAEEI----PLKILAHNGLVG 293
Query: 135 SIIGKAGATIKSFMDDSQAVIKISRL-DHSYYGLNDRLVTLTGTLDEQMRALELILLKLS 193
+IGK G +K ++ I IS L D S Y +R +T+ GT++ A I+ KL
Sbjct: 294 RLIGKEGRNLKKIEHETGTKITISSLQDLSIYN-PERTITVKGTVEACASAEIEIMKKLR 352
Query: 194 E 194
E
Sbjct: 353 E 353
Score = 125 (49.1 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 39/157 (24%), Positives = 73/157 (46%)
Query: 3 TNESSYVPSPDVHGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQS 62
T S Y S H P S P ++ + + GA+IGK G+ I
Sbjct: 406 TTHSGYFSSLYPH--HQFGPFPHHHSYPEQE--IVNLFIPTQAVGAIIGKKGAHIKQLAR 461
Query: 63 QSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKT 122
+GA I+++ + P ++R+++I+G + +A + KL E + + ++V +
Sbjct: 462 FAGASIKIAPAEG--PDVSERMVIITGPPEAQFKAQGRIFGKLKEE-NFFNPKEEVKLEA 518
Query: 123 KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISR 159
+R VP+S+ G +IGK G T+ + + A + + R
Sbjct: 519 HIR--VPSSTAGRVIGKGGKTVNELQNLTSAEVIVPR 553
Score = 99 (39.9 bits), Expect = 5.0e-09, Sum P(3) = 5.0e-09
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMR 183
+ L +P + G+IIGK GA IK + A IKI+ + +++R+V +TG + Q +
Sbjct: 436 VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGP--DVSERMVIITGPPEAQFK 493
Query: 184 ALELILLKLSEDTLYS 199
A I KL E+ ++
Sbjct: 494 AQGRIFGKLKEENFFN 509
Score = 88 (36.0 bits), Expect = 5.0e-09, Sum P(3) = 5.0e-09
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
++ L N L G +IGK G + + ++G +I +S + +R I + GT+ E
Sbjct: 283 LKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTV-EACA 341
Query: 97 AVDLVIDKLLTELHAED 113
+ ++ I K L E D
Sbjct: 342 SAEIEIMKKLREAFEND 358
Score = 80 (33.2 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 18/65 (27%), Positives = 36/65 (55%)
Query: 263 VADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESM 322
+ + +G ++G+ G +I ++++ +GA IK++ SER V I+GP + A+
Sbjct: 440 IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG--PDVSERMVIITGPPEAQFKAQGR 497
Query: 323 IMQKV 327
I K+
Sbjct: 498 IFGKL 502
Score = 62 (26.9 bits), Expect = 5.0e-09, Sum P(3) = 5.0e-09
Identities = 22/80 (27%), Positives = 36/80 (45%)
Query: 248 FQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKV 307
F N K++ I V G V+G+GG+ + E+ ++ A + V R E V
Sbjct: 507 FFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVP-RDQTPDENEEVIV 565
Query: 308 TISGPQRSIRTAESMIMQKV 327
I G + +TA+ I + V
Sbjct: 566 RIIGHFFASQTAQRKIREIV 585
Score = 45 (20.9 bits), Expect = 9.5e-05, Sum P(3) = 9.5e-05
Identities = 19/72 (26%), Positives = 33/72 (45%)
Query: 44 PLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTD---RIIMISGTIDEILRAVDL 100
PLAG V+ K G D+ Q+ A R+ E G + +I+ + ++ + LR+ +
Sbjct: 29 PLAGQVLLKSGYAFVDYPDQNWA----IRAIETLSGKVELHGKIMEVDYSVSKKLRSRKI 84
Query: 101 VIDKLLTELHAE 112
I + L E
Sbjct: 85 QIRNIPPHLQWE 96
>UNIPROTKB|F1LU04 [details] [associations]
symbol:F1LU04 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 IPI:IPI00777998
Ensembl:ENSRNOT00000016081 Uniprot:F1LU04
Length = 358
Score = 115 (45.5 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 33/111 (29%), Positives = 56/111 (50%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G ++ + +SGA + +S + +RII ++G + +
Sbjct: 28 IRLLMQGKEVGSIIGKKGESVKK-REESGAHLNISEGN-----CPERIITLAGPTNATFK 81
Query: 97 AVDLVIDKLLTELHAEDQADDVGTKTKL--RLIVPNSSCGSIIGKAGATIK 145
A ++ KL E + + + RL+VP+S CGS+IGK IK
Sbjct: 82 AFAMI--KL-EEDRSRSMTNSTAASRPVTSRLVVPDSQCGSLIGKGICKIK 129
Score = 113 (44.8 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 25/56 (44%), Positives = 39/56 (69%)
Query: 268 IGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMI 323
IG ++GR G I EI Q+SGA+IK+++ G+++R+VTI+GP SI A+ +I
Sbjct: 293 IGCIIGRQGAKINEIHQMSGAQIKIANP----EGSTDRQVTITGPAASISLAQYLI 344
Score = 96 (38.9 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 29/84 (34%), Positives = 39/84 (46%)
Query: 113 DQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLV 172
+ D +T + PN G IIG+ GA I S A IKI+ + G DR V
Sbjct: 273 EAGSDASAQTTSHELTPNDLIGCIIGRQGAKINEIHQMSGAQIKIANPE----GSTDRQV 328
Query: 173 TLTGTLDEQMRALELILLKLSEDT 196
T+TG A LI ++LS +T
Sbjct: 329 TITGPAASISLAQYLINVRLSPET 352
Score = 86 (35.3 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMR 183
+RL++ GSIIGK G ++K ++S A + IS + +R++TL G + +
Sbjct: 28 IRLLMQGKEVGSIIGKKGESVKK-REESGAHLNISEGN-----CPERIITLAGPTNATFK 81
Query: 184 ALELILLKLSEDTLYSQT 201
A +I KL ED S T
Sbjct: 82 AFAMI--KLEEDRSRSMT 97
Score = 64 (27.6 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 19/85 (22%), Positives = 41/85 (48%)
Query: 27 SSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIM 86
+S +P R +V + G++IGKG I + +G +Q++ + P ++++ I
Sbjct: 98 NSTAASRPVTSRLVVPDSQCGSLIGKGICKIKEVGETTGP-VQVAG--DMLPNSSEQAIP 154
Query: 87 ISGTIDEILRAVDLVIDKLLTELHA 111
I+ I+ V+ + +L H+
Sbjct: 155 IASIPQSIIECVNQIGVVMLETQHS 179
>UNIPROTKB|P61978 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0007165 "signal transduction" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IMP] [GO:0072369
"regulation of lipid transport by positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0048260 "positive regulation of receptor-mediated endocytosis"
evidence=IMP] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IMP] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IMP] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IMP] [GO:0003697
"single-stranded DNA binding" evidence=TAS] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0019048 GO:GO:0007165
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0003723 GO:GO:0000978
GO:GO:0001077 GO:GO:0000790 GO:GO:0003697 EMBL:CH471089
GO:GO:0048260 GO:GO:0000398 GO:GO:0071013 EMBL:AL354733
GO:GO:0045716 GO:GO:0010988 CTD:3190 eggNOG:NOG285495
HOVERGEN:HBG051916 KO:K12886 OMA:KALRTDX OrthoDB:EOG49KFRD
GO:GO:0072369 InterPro:IPR012987 Pfam:PF08067 EMBL:S74678
EMBL:X72727 EMBL:AB209562 EMBL:BC000355 EMBL:BC014980
IPI:IPI00216049 IPI:IPI00216746 IPI:IPI00807545 PIR:S43363
RefSeq:NP_002131.2 RefSeq:NP_112552.1 RefSeq:NP_112553.1
UniGene:Hs.522257 PDB:1J5K PDB:1KHM PDB:1ZZI PDB:1ZZJ PDB:1ZZK
PDBsum:1J5K PDBsum:1KHM PDBsum:1ZZI PDBsum:1ZZJ PDBsum:1ZZK
ProteinModelPortal:P61978 SMR:P61978 DIP:DIP-31805N IntAct:P61978
MINT:MINT-225422 STRING:P61978 PhosphoSite:P61978 DMDM:48429103
SWISS-2DPAGE:P61978 PaxDb:P61978 PRIDE:P61978 DNASU:3190
Ensembl:ENST00000351839 Ensembl:ENST00000360384
Ensembl:ENST00000376263 Ensembl:ENST00000376264
Ensembl:ENST00000376268 Ensembl:ENST00000376281 GeneID:3190
KEGG:hsa:3190 UCSC:uc004ang.4 UCSC:uc004anh.4 GeneCards:GC09M086582
HGNC:HGNC:5044 HPA:CAB004435 HPA:CAB016225 HPA:HPA007644 MIM:600712
neXtProt:NX_P61978 PharmGKB:PA162391350 ChEMBL:CHEMBL3469
ChiTaRS:HNRNPK EvolutionaryTrace:P61978 GenomeRNAi:3190
NextBio:12686 PMAP-CutDB:P61978 ArrayExpress:P61978 Bgee:P61978
CleanEx:HS_HNRNPK Genevestigator:P61978 GermOnline:ENSG00000165119
Uniprot:P61978
Length = 463
Score = 128 (50.1 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 58/218 (26%), Positives = 95/218 (43%)
Query: 31 TEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQL--SRSHEFFPGTTDRIIMIS 88
T++ +R L+ + AGAVIGKGG I ++ A + + S E + I I
Sbjct: 39 TDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIG 98
Query: 89 GTIDEILRAVD----LVIDKLLTELHAEDQADDV-------GTK--TKLRLIVPNSSCGS 135
+ +I+ ++ L ++L E A + G+ +LRL++ S G
Sbjct: 99 EILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGG 158
Query: 136 IIGKAGATIKSFMDDSQAVIKISR--LDHSYYGLNDRLVTLTGTLDEQMRALELILLKLS 193
IIG GA IK +++Q IK+ + HS DR+V + G D + +++IL +S
Sbjct: 159 IIGVKGAKIKELRENTQTTIKLFQECCPHS----TDRVVLIGGKPDRVVECIKIILDLIS 214
Query: 194 EDTLYSQTMTV-P------YTYAG--VFFSGFHGMPYG 222
E + + P Y Y G + F G P G
Sbjct: 215 ESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVG 252
Score = 100 (40.3 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 24/90 (26%), Positives = 45/90 (50%)
Query: 244 GGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTS 303
GGR + + + + + G ++G+GG+ I +I SGA IK+ + G+
Sbjct: 375 GGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSE 431
Query: 304 ERKVTISGPQRSIRTAESMIMQKVAYASDR 333
+R +TI+G Q I+ A+ ++ V S +
Sbjct: 432 DRIITITGTQDQIQNAQYLLQNSVKQYSGK 461
Score = 73 (30.8 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 25/99 (25%), Positives = 50/99 (50%)
Query: 106 LTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYY 165
+ E A ++ + +LR+++ + + G++IGK G IK+ D A + + D S
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP--DSS-- 82
Query: 166 GLNDRLVTLTGTLDEQMRALELILLKLSEDT-LYSQTMT 203
G +R+++++ ++ L+ I+ L E L S T T
Sbjct: 83 G-PERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 120
>MGI|MGI:99894 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10090 "Mus musculus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0000978 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding" evidence=ISO] [GO:0001077
"RNA polymerase II core promoter proximal region sequence-specific
DNA binding transcription factor activity involved in positive
regulation of transcription" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010988
"regulation of low-density lipoprotein particle clearance"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042981 "regulation of apoptotic process" evidence=IMP]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
MGI:MGI:99894 GO:GO:0005737 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0006397 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOVERGEN:HBG051916 KO:K12886
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:L31961
EMBL:AK011428 EMBL:AK051313 EMBL:AK078777 EMBL:AK088462
EMBL:BC006694 IPI:IPI00224575 IPI:IPI00890005 IPI:IPI00990152
RefSeq:NP_079555.1 UniGene:Mm.142872 ProteinModelPortal:P61979
SMR:P61979 IntAct:P61979 STRING:P61979 PhosphoSite:P61979
REPRODUCTION-2DPAGE:IPI00223253 REPRODUCTION-2DPAGE:P61979
PaxDb:P61979 PRIDE:P61979 Ensembl:ENSMUST00000043269
Ensembl:ENSMUST00000116403 Ensembl:ENSMUST00000176207 GeneID:15387
KEGG:mmu:15387 UCSC:uc007qtw.1 UCSC:uc007qty.1 NextBio:288062
Bgee:P61979 Genevestigator:P61979 GermOnline:ENSMUSG00000063902
Uniprot:P61979
Length = 463
Score = 128 (50.1 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 58/218 (26%), Positives = 95/218 (43%)
Query: 31 TEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQL--SRSHEFFPGTTDRIIMIS 88
T++ +R L+ + AGAVIGKGG I ++ A + + S E + I I
Sbjct: 39 TDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIG 98
Query: 89 GTIDEILRAVD----LVIDKLLTELHAEDQADDV-------GTK--TKLRLIVPNSSCGS 135
+ +I+ ++ L ++L E A + G+ +LRL++ S G
Sbjct: 99 EILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGG 158
Query: 136 IIGKAGATIKSFMDDSQAVIKISR--LDHSYYGLNDRLVTLTGTLDEQMRALELILLKLS 193
IIG GA IK +++Q IK+ + HS DR+V + G D + +++IL +S
Sbjct: 159 IIGVKGAKIKELRENTQTTIKLFQECCPHS----TDRVVLIGGKPDRVVECIKIILDLIS 214
Query: 194 EDTLYSQTMTV-P------YTYAG--VFFSGFHGMPYG 222
E + + P Y Y G + F G P G
Sbjct: 215 ESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVG 252
Score = 100 (40.3 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 24/90 (26%), Positives = 45/90 (50%)
Query: 244 GGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTS 303
GGR + + + + + G ++G+GG+ I +I SGA IK+ + G+
Sbjct: 375 GGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSE 431
Query: 304 ERKVTISGPQRSIRTAESMIMQKVAYASDR 333
+R +TI+G Q I+ A+ ++ V S +
Sbjct: 432 DRIITITGTQDQIQNAQYLLQNSVKQYSGK 461
Score = 73 (30.8 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 25/99 (25%), Positives = 50/99 (50%)
Query: 106 LTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYY 165
+ E A ++ + +LR+++ + + G++IGK G IK+ D A + + D S
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP--DSS-- 82
Query: 166 GLNDRLVTLTGTLDEQMRALELILLKLSEDT-LYSQTMT 203
G +R+++++ ++ L+ I+ L E L S T T
Sbjct: 83 G-PERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 120
>RGD|71058 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=IEA;ISO] [GO:0000978 "RNA polymerase II core promoter
proximal region sequence-specific DNA binding" evidence=IEA;ISO]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity involved
in positive regulation of transcription" evidence=IEA;ISO]
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010988 "regulation of low-density
lipoprotein particle clearance" evidence=IEA;ISO] [GO:0042981
"regulation of apoptotic process" evidence=ISO] [GO:0045716
"positive regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA;ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 RGD:71058 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0006397 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 HOVERGEN:HBG051916
KO:K12886 InterPro:IPR012987 Pfam:PF08067 EMBL:D17711
IPI:IPI00780608 PIR:S41495 RefSeq:NP_476482.1 UniGene:Rn.11854
ProteinModelPortal:P61980 SMR:P61980 IntAct:P61980 MINT:MINT-1505757
STRING:P61980 PhosphoSite:P61980 World-2DPAGE:0004:P61980
PRIDE:P61980 Ensembl:ENSRNOT00000025916 GeneID:117282
KEGG:rno:117282 UCSC:RGD:71058 InParanoid:P61980 NextBio:620239
ArrayExpress:P61980 Genevestigator:P61980
GermOnline:ENSRNOG00000019113 Uniprot:P61980
Length = 463
Score = 128 (50.1 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 58/218 (26%), Positives = 95/218 (43%)
Query: 31 TEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQL--SRSHEFFPGTTDRIIMIS 88
T++ +R L+ + AGAVIGKGG I ++ A + + S E + I I
Sbjct: 39 TDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIG 98
Query: 89 GTIDEILRAVD----LVIDKLLTELHAEDQADDV-------GTK--TKLRLIVPNSSCGS 135
+ +I+ ++ L ++L E A + G+ +LRL++ S G
Sbjct: 99 EILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGG 158
Query: 136 IIGKAGATIKSFMDDSQAVIKISR--LDHSYYGLNDRLVTLTGTLDEQMRALELILLKLS 193
IIG GA IK +++Q IK+ + HS DR+V + G D + +++IL +S
Sbjct: 159 IIGVKGAKIKELRENTQTTIKLFQECCPHS----TDRVVLIGGKPDRVVECIKIILDLIS 214
Query: 194 EDTLYSQTMTV-P------YTYAG--VFFSGFHGMPYG 222
E + + P Y Y G + F G P G
Sbjct: 215 ESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVG 252
Score = 100 (40.3 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 24/90 (26%), Positives = 45/90 (50%)
Query: 244 GGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTS 303
GGR + + + + + G ++G+GG+ I +I SGA IK+ + G+
Sbjct: 375 GGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSE 431
Query: 304 ERKVTISGPQRSIRTAESMIMQKVAYASDR 333
+R +TI+G Q I+ A+ ++ V S +
Sbjct: 432 DRIITITGTQDQIQNAQYLLQNSVKQYSGK 461
Score = 73 (30.8 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 25/99 (25%), Positives = 50/99 (50%)
Query: 106 LTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYY 165
+ E A ++ + +LR+++ + + G++IGK G IK+ D A + + D S
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP--DSS-- 82
Query: 166 GLNDRLVTLTGTLDEQMRALELILLKLSEDT-LYSQTMT 203
G +R+++++ ++ L+ I+ L E L S T T
Sbjct: 83 G-PERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 120
>UNIPROTKB|F8VXH9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022190
ProteinModelPortal:F8VXH9 SMR:F8VXH9 Ensembl:ENST00000550520
ArrayExpress:F8VXH9 Bgee:F8VXH9 Uniprot:F8VXH9
Length = 160
Score = 161 (61.7 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 42/148 (28%), Positives = 77/148 (52%)
Query: 51 GKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELH 110
GK G ++ + +SGARI +S + +RII ++G + I +A ++IDKL ++
Sbjct: 22 GKKGESVKKMREESGARINISEGN-----CPERIITLAGPTNAIFKAFAMIIDKLEEDIS 76
Query: 111 AEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKIS--RLDHSYYG 166
+ ++ LRL+VP S CGS+IGK G IK + + A ++++ L +S
Sbjct: 77 SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNS--- 133
Query: 167 LNDRLVTLTGTLDEQMRALELILLKLSE 194
+R +T+ G + ++ I + + E
Sbjct: 134 -TERAITIAGIPQSIIECVKQICVVMLE 160
Score = 95 (38.5 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 21/59 (35%), Positives = 37/59 (62%)
Query: 258 SLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSI 316
+L + V G ++G+GG I EI + +GA+++V+ GD ++ER +TI+G +SI
Sbjct: 91 TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVA--GDMLPNSTERAITIAGIPQSI 147
Score = 74 (31.1 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 138 GKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTL 197
GK G ++K ++S A I IS + +R++TL G + +A +I+ KL ED
Sbjct: 22 GKKGESVKKMREESGARINISEGN-----CPERIITLAGPTNAIFKAFAMIIDKLEEDIS 76
Query: 198 YSQT 201
S T
Sbjct: 77 SSMT 80
>UNIPROTKB|A6QP83 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
GeneTree:ENSGT00650000093048 CTD:8939 OMA:AAPHQNT OrthoDB:EOG4X97H1
EMBL:DAAA02032235 EMBL:DAAA02032236 EMBL:BC149198 IPI:IPI00714784
RefSeq:NP_001094687.1 UniGene:Bt.2190 SMR:A6QP83
Ensembl:ENSBTAT00000017383 GeneID:541080 KEGG:bta:541080
InParanoid:A6QP83 NextBio:20878996 Uniprot:A6QP83
Length = 572
Score = 139 (54.0 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 41/154 (26%), Positives = 75/154 (48%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGT---IDEIL 95
F V + + G +IG+GG I+ Q++SG +IQ++ P +R +++GT I++
Sbjct: 82 FKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIP---ERPCVLTGTPESIEQAK 138
Query: 96 RAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVI 155
R + ++D+ + D G T + +P S G +IGK G TIK + + V
Sbjct: 139 RLLGQIVDRCRNGPGFHNDVD--GNSTVQEIPIPASKVGLVIGKGGETIKQ-LQERTGVK 195
Query: 156 KISRLDHSYYGLNDRLVTLTGTLDEQMRALELIL 189
+ D D+ + +TG + +A E++L
Sbjct: 196 MVMIQDGPLPTGADKPLRITGDPFKVQQAREMVL 229
Score = 111 (44.1 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 40/152 (26%), Positives = 73/152 (48%)
Query: 47 GAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLL 106
G VIGKGG TI Q ++G ++ + + P D+ + I+G ++ +A ++V++ ++
Sbjct: 175 GLVIGKGGETIKQLQERTGVKMVMIQDGPL-PTGADKPLRITGDPFKVQQAREMVLE-II 232
Query: 107 TELHAEDQADDVGTKT---------KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKI 157
E +DQAD G + + + VP + G +IG+ G IK +D+ I+
Sbjct: 233 RE---KDQADFRGVRGDFSSRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQF 289
Query: 158 SRLDHSYYGLN-DRLVTLTGTLDEQMRALELI 188
D G++ +R + G D A +I
Sbjct: 290 KPDD----GISPERAAQVMGPPDRCQHAAHVI 317
Score = 89 (36.4 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 24/73 (32%), Positives = 36/73 (49%)
Query: 259 LTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRT 318
+T V + G V+G+GG NI I+Q SGA +++ + + R TI G I
Sbjct: 357 VTYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPSTDPNLRIFTIRGLPPQIEV 416
Query: 319 AESMIMQKVAYAS 331
A +I +KV S
Sbjct: 417 ARHLIDEKVGGTS 429
Score = 74 (31.1 bits), Expect = 9.3e-10, Sum P(2) = 9.3e-10
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 258 SLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIR 317
S+ + V +G V+GR G I +I +G RI+ D S ER + GP +
Sbjct: 255 SIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKP-DDGIS--PERAAQVMGPPDRCQ 311
Query: 318 TAESMIMQKVAYASDR 333
A +I + + A +R
Sbjct: 312 HAAHVISELILTAQER 327
>UNIPROTKB|F6Y140 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
OMA:QASGNCH GeneTree:ENSGT00650000093048 EMBL:AAEX03012495
Ensembl:ENSCAFT00000029641 Uniprot:F6Y140
Length = 602
Score = 134 (52.2 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 39/163 (23%), Positives = 78/163 (47%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAV 98
+ V + + G +IG+GG IN Q SG ++Q+S P +R + ++G + + +A
Sbjct: 5 YRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP---ERSVSLTGAPESVQKA- 60
Query: 99 DLVIDKLLTELHA------EDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQ 152
+++D +++ D A+ T +++P G +IGK G TIK + +
Sbjct: 61 KMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQE--R 118
Query: 153 AVIKISRLDHSYYGLN-DRLVTLTGTLDEQMRALELILLKLSE 194
A +K+ + N D+ + + G + +A E+++ L E
Sbjct: 119 AGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 161
Score = 112 (44.5 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
Identities = 35/120 (29%), Positives = 61/120 (50%)
Query: 46 AGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKL 105
AG VIGKGG TI Q ++G ++ L + D+ + I G ++ +A ++V+D +
Sbjct: 101 AGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNV-DKPLRIIGDPYKVQQACEMVMD-I 158
Query: 106 LTELHAEDQAD--DVGTKTK--LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLD 161
L E D + G++ + + VP S G +IG++G IK +D+ I+ + D
Sbjct: 159 LRERDQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD 218
Score = 95 (38.5 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 27/93 (29%), Positives = 45/93 (48%)
Query: 240 GPNM--GGR---KFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSD 294
GP M GGR + Q N +T + G V+GRGG N+ I+Q +GA +++S
Sbjct: 259 GPGMPPGGRGRGRGQGNWGPPGGEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISR 318
Query: 295 RGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
+ + + I G + I A+ +I +K+
Sbjct: 319 QLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKI 351
Score = 66 (28.3 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 22/73 (30%), Positives = 32/73 (43%)
Query: 242 NMGGRKFQNNKDDRTNS-LTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFS 300
+ GG +N R + + V +G V+GR G I +I +G RI+ D
Sbjct: 163 DQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQ--D--D 218
Query: 301 GTSERKVT-ISGP 312
GT K+ I GP
Sbjct: 219 GTGPEKIAHIMGP 231
>WB|WBGene00003978 [details] [associations]
symbol:pes-4 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 EMBL:FO081827 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 RefSeq:NP_497351.3 ProteinModelPortal:Q95Y67
SMR:Q95Y67 PaxDb:Q95Y67 EnsemblMetazoa:Y119D3B.17 GeneID:175288
KEGG:cel:CELE_Y119D3B.17 UCSC:Y119D3B.17 CTD:175288
WormBase:Y119D3B.17 HOGENOM:HOG000020666 InParanoid:Q95Y67
OMA:PHSTERA NextBio:887534 Uniprot:Q95Y67
Length = 432
Score = 180 (68.4 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 53/163 (32%), Positives = 85/163 (52%)
Query: 19 STAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFP 78
S +P + S T IR L+ G++IGK G I + +SGA+I +S
Sbjct: 57 SCSP-RETSPSTTSLVLTIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDG----- 110
Query: 79 GTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIG 138
+RI+ I+GT+ I +A ++V +K ++ + T +R+IVP + CGS+IG
Sbjct: 111 SCPERIVTITGTLGVIGKAFNMVCNKFEEDMLLLPNSVPKPPIT-MRVIVPATQCGSLIG 169
Query: 139 KAGATIKSFMDDSQAVIKISR--LDHSYYGLNDRLVTLTGTLD 179
K G+ IK + + A I+++ L HS +R VTL+GT D
Sbjct: 170 KGGSKIKDIREATGASIQVASEMLPHS----TERAVTLSGTAD 208
Score = 118 (46.6 bits), Expect = 0.00031, P = 0.00031
Identities = 52/204 (25%), Positives = 91/204 (44%)
Query: 26 LSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRII 85
L + + P +R +V G++IGKGGS I D + +GA IQ++ E P +T+R +
Sbjct: 144 LPNSVPKPPITMRVIVPATQCGSLIGKGGSKIKDIREATGASIQVAS--EMLPHSTERAV 201
Query: 86 MISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSI-IGKAGATI 144
+SGT D I + V LL +A G+ R P + + I + ATI
Sbjct: 202 TLSGTADAINLCMTQVCQILL-------EAPPKGSTITYR---PKPTFNPLAIATSAATI 251
Query: 145 KSFMDDSQAVIKISR--LDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTM 202
+ +QA +++ L G+ + +T L +Q + + + L++Q +
Sbjct: 252 AAQQQQAQAQQQLAAAALMGGGQGVQVQQQLVTNALLQQHQFAAVQQELAARAALFNQQL 311
Query: 203 TVP-----YTYAGVFFSGFHGMPY 221
+P + A + G HG+ Y
Sbjct: 312 MMPGQQQQASQAQEVYLGQHGLIY 335
Score = 109 (43.4 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 30/74 (40%), Positives = 41/74 (55%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMR 183
+RL++ GSIIGK G IK ++S A I IS D S +R+VT+TGTL +
Sbjct: 74 IRLLMQGKEVGSIIGKKGDQIKKIREESGAKINIS--DGS---CPERIVTITGTLGVIGK 128
Query: 184 ALELILLKLSEDTL 197
A ++ K ED L
Sbjct: 129 AFNMVCNKFEEDML 142
Score = 82 (33.9 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 269 GFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQ 325
G ++G+GG I +I + +GA I+V+ + ++ER VT+SG +I + + Q
Sbjct: 165 GSLIGKGGSKIKDIREATGASIQVAS--EMLPHSTERAVTLSGTADAINLCMTQVCQ 219
>WB|WBGene00007534 [details] [associations]
symbol:C12D8.1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016246 "RNA
interference" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0016246
GO:GO:0003723 EMBL:Z73969 KO:K13210 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 HOGENOM:HOG000018892
GeneID:179423 KEGG:cel:CELE_C12D8.1 UCSC:C12D8.1b CTD:179423
NextBio:905322 PIR:T19217 RefSeq:NP_505633.1
ProteinModelPortal:Q17936 SMR:Q17936 IntAct:Q17936
MINT:MINT-1038809 STRING:Q17936 PRIDE:Q17936
EnsemblMetazoa:C12D8.1b WormBase:C12D8.1b InParanoid:Q17936
OMA:PERCAVI ArrayExpress:Q17936 Uniprot:Q17936
Length = 611
Score = 140 (54.3 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 31/114 (27%), Positives = 59/114 (51%)
Query: 38 RFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRA 97
++ + G VIG+GGS I Q+++G R+Q+S + P + R++ + G+ + A
Sbjct: 73 KYPIPESAVGIVIGRGGSEIQGIQAKAGCRVQMSPDAD--PSSGVRMVTLEGSRSNVETA 130
Query: 98 VDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDS 151
L+ + + + Q +T + + +P + CG IIGK+G TI+ + S
Sbjct: 131 KHLINEVVARSQNPRPQYGFPRAQTTIDIAIPPNRCGLIIGKSGDTIRQLQEKS 184
Score = 140 (54.3 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 43/161 (26%), Positives = 74/161 (45%)
Query: 40 LVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVD 99
+V G +IGK G TI ++G +IQ + P T +R +I GT D+I RA +
Sbjct: 254 VVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDD--PSTPERCAVIMGTRDQIYRATE 311
Query: 100 LVIDKLLTELHAEDQADDVG------TKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQA 153
+ + + + +V + + VP + CG +IGK G TIK +S A
Sbjct: 312 RITELVKKSTMQQGGGGNVAGAMVSNEASTFYMSVPAAKCGLVIGKGGETIKQINSESGA 371
Query: 154 VIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSE 194
++SR D + ++++ + G A LI +K+ +
Sbjct: 372 HCELSR-DPTG-NADEKVFVIKGGKRAIEHAKHLIRIKVGD 410
Score = 121 (47.7 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 44/159 (27%), Positives = 70/159 (44%)
Query: 47 GAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLL 106
G +IGK G TI Q +SG ++ L + ++ + + + I+G +I A LV + L
Sbjct: 167 GLIIGKSGDTIRQLQEKSGCKMILVQDNQSVSDQS-KPLRITGDPQKIELAKQLVAEILN 225
Query: 107 TE--------LHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKIS 158
+ L G + ++VP SS G IIGK G TIK ++ I+
Sbjct: 226 SGGDGNGGSGLQMHHAGGGGGASARGEVVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFK 285
Query: 159 RLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTL 197
D +R + GT D+ RA E I + + T+
Sbjct: 286 PDDDP--STPERCAVIMGTRDQIYRATERITELVKKSTM 322
Score = 88 (36.0 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 28/89 (31%), Positives = 45/89 (50%)
Query: 240 GPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFF 299
G N+ G N ++ + V G V+G+GG I +I+ SGA ++S R
Sbjct: 327 GGNVAGAMVSNE----ASTFYMSVPAAKCGLVIGKGGETIKQINSESGAHCELS-RDP-- 379
Query: 300 SGTSERKV-TISGPQRSIRTAESMIMQKV 327
+G ++ KV I G +R+I A+ +I KV
Sbjct: 380 TGNADEKVFVIKGGKRAIEHAKHLIRIKV 408
Score = 59 (25.8 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 268 IGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
+G ++G+ G I ++ +G +I+ D T ER I G + I A I + V
Sbjct: 260 VGIIIGKQGDTIKRLAMETGTKIQFKPDDD--PSTPERCAVIMGTRDQIYRATERITELV 317
>UNIPROTKB|Q17936 [details] [associations]
symbol:C12D8.1 "Protein C12D8.1, isoform b" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0016246 GO:GO:0003723
EMBL:Z73969 KO:K13210 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 HOGENOM:HOG000018892
GeneID:179423 KEGG:cel:CELE_C12D8.1 UCSC:C12D8.1b CTD:179423
NextBio:905322 PIR:T19217 RefSeq:NP_505633.1
ProteinModelPortal:Q17936 SMR:Q17936 IntAct:Q17936
MINT:MINT-1038809 STRING:Q17936 PRIDE:Q17936
EnsemblMetazoa:C12D8.1b WormBase:C12D8.1b InParanoid:Q17936
OMA:PERCAVI ArrayExpress:Q17936 Uniprot:Q17936
Length = 611
Score = 140 (54.3 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 31/114 (27%), Positives = 59/114 (51%)
Query: 38 RFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRA 97
++ + G VIG+GGS I Q+++G R+Q+S + P + R++ + G+ + A
Sbjct: 73 KYPIPESAVGIVIGRGGSEIQGIQAKAGCRVQMSPDAD--PSSGVRMVTLEGSRSNVETA 130
Query: 98 VDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDS 151
L+ + + + Q +T + + +P + CG IIGK+G TI+ + S
Sbjct: 131 KHLINEVVARSQNPRPQYGFPRAQTTIDIAIPPNRCGLIIGKSGDTIRQLQEKS 184
Score = 140 (54.3 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 43/161 (26%), Positives = 74/161 (45%)
Query: 40 LVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVD 99
+V G +IGK G TI ++G +IQ + P T +R +I GT D+I RA +
Sbjct: 254 VVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDD--PSTPERCAVIMGTRDQIYRATE 311
Query: 100 LVIDKLLTELHAEDQADDVG------TKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQA 153
+ + + + +V + + VP + CG +IGK G TIK +S A
Sbjct: 312 RITELVKKSTMQQGGGGNVAGAMVSNEASTFYMSVPAAKCGLVIGKGGETIKQINSESGA 371
Query: 154 VIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSE 194
++SR D + ++++ + G A LI +K+ +
Sbjct: 372 HCELSR-DPTG-NADEKVFVIKGGKRAIEHAKHLIRIKVGD 410
Score = 121 (47.7 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 44/159 (27%), Positives = 70/159 (44%)
Query: 47 GAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLL 106
G +IGK G TI Q +SG ++ L + ++ + + + I+G +I A LV + L
Sbjct: 167 GLIIGKSGDTIRQLQEKSGCKMILVQDNQSVSDQS-KPLRITGDPQKIELAKQLVAEILN 225
Query: 107 TE--------LHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKIS 158
+ L G + ++VP SS G IIGK G TIK ++ I+
Sbjct: 226 SGGDGNGGSGLQMHHAGGGGGASARGEVVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFK 285
Query: 159 RLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTL 197
D +R + GT D+ RA E I + + T+
Sbjct: 286 PDDDP--STPERCAVIMGTRDQIYRATERITELVKKSTM 322
Score = 88 (36.0 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 28/89 (31%), Positives = 45/89 (50%)
Query: 240 GPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFF 299
G N+ G N ++ + V G V+G+GG I +I+ SGA ++S R
Sbjct: 327 GGNVAGAMVSNE----ASTFYMSVPAAKCGLVIGKGGETIKQINSESGAHCELS-RDP-- 379
Query: 300 SGTSERKV-TISGPQRSIRTAESMIMQKV 327
+G ++ KV I G +R+I A+ +I KV
Sbjct: 380 TGNADEKVFVIKGGKRAIEHAKHLIRIKV 408
Score = 59 (25.8 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 268 IGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
+G ++G+ G I ++ +G +I+ D T ER I G + I A I + V
Sbjct: 260 VGIIIGKQGDTIKRLAMETGTKIQFKPDDD--PSTPERCAVIMGTRDQIYRATERITELV 317
>UNIPROTKB|Q3T0D0 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0072369 "regulation of
lipid transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=IEA] [GO:0045716 "positive
regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA] [GO:0010988 "regulation of
low-density lipoprotein particle clearance" evidence=IEA]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0006397 GO:GO:0003723
GO:GO:0000978 GO:GO:0001077 GO:GO:0000790 GO:GO:0048260
GO:GO:0071013 GO:GO:0045716 GO:GO:0010988 EMBL:BC102450
IPI:IPI00696554 RefSeq:NP_001029734.1 UniGene:Bt.47688
ProteinModelPortal:Q3T0D0 SMR:Q3T0D0 STRING:Q3T0D0 PRIDE:Q3T0D0
Ensembl:ENSBTAT00000028162 GeneID:528135 KEGG:bta:528135 CTD:3190
eggNOG:NOG285495 GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764
HOVERGEN:HBG051916 InParanoid:Q3T0D0 KO:K12886 OMA:KALRTDX
OrthoDB:EOG49KFRD NextBio:20874747 GO:GO:0072369 InterPro:IPR012987
Pfam:PF08067 Uniprot:Q3T0D0
Length = 464
Score = 124 (48.7 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 56/216 (25%), Positives = 92/216 (42%)
Query: 31 TEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQL--SRSHEFFPGTTDRIIMIS 88
T++ +R L+ + AGAVIGKGG I ++ A + + S E + I I
Sbjct: 39 TDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIG 98
Query: 89 GTIDEILRAVD----LVIDKLLTELHAEDQADDV-------GTK--TKLRLIVPNSSCGS 135
+ +I+ ++ L ++L E A + G+ +LRL++ S G
Sbjct: 99 EILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGG 158
Query: 136 IIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSED 195
IIG GA IK +++Q IK+ DR+V + G D + +++IL +SE
Sbjct: 159 IIGVKGAKIKELRENTQTTIKL--FQECCPQSTDRVVLIGGKPDRVVECIKIILDLISES 216
Query: 196 TLYSQTMTV-P------YTYAG--VFFSGFHGMPYG 222
+ + P Y Y G + F G P G
Sbjct: 217 PIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVG 252
Score = 102 (41.0 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 24/89 (26%), Positives = 45/89 (50%)
Query: 244 GGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTS 303
GGR + + + + + G ++G+GG+ I +I SGA IK+ + G+
Sbjct: 375 GGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSE 431
Query: 304 ERKVTISGPQRSIRTAESMIMQKVAYASD 332
+R +TI+G Q I+ A+ ++ V +D
Sbjct: 432 DRIITITGTQDQIQNAQYLLQNSVKQYAD 460
Score = 73 (30.8 bits), Expect = 9.9e-06, Sum P(2) = 9.9e-06
Identities = 25/99 (25%), Positives = 50/99 (50%)
Query: 106 LTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYY 165
+ E A ++ + +LR+++ + + G++IGK G IK+ D A + + D S
Sbjct: 27 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP--DSS-- 82
Query: 166 GLNDRLVTLTGTLDEQMRALELILLKLSEDT-LYSQTMT 203
G +R+++++ ++ L+ I+ L E L S T T
Sbjct: 83 G-PERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 120
>SGD|S000000128 [details] [associations]
symbol:HEK2 "RNA binding protein involved in asymmetric
localization of ASH1 mRNA" species:4932 "Saccharomyces cerevisiae"
[GO:0008298 "intracellular mRNA localization" evidence=IMP;IPI]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0007004 "telomere maintenance via
telomerase" evidence=IMP;IPI] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0000784 "nuclear chromosome, telomeric region"
evidence=IDA] [GO:0000781 "chromosome, telomeric region"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IGI;IMP] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 SGD:S000000128 GO:GO:0006417
GO:GO:0003729 GO:GO:0016568 EMBL:BK006936 GO:GO:0048255 EMBL:X77291
GO:GO:0000932 GO:GO:0008298 GO:GO:0051028 GO:GO:0000784
GO:GO:0007004 EMBL:Z35793 EMBL:AY692814 PIR:S45766
RefSeq:NP_009521.1 ProteinModelPortal:P38199 SMR:P38199
DIP:DIP-3934N IntAct:P38199 MINT:MINT-506819 STRING:P38199
PaxDb:P38199 PeptideAtlas:P38199 EnsemblFungi:YBL032W GeneID:852248
KEGG:sce:YBL032W CYGD:YBL032w eggNOG:NOG294694 OMA:NSHISSI
OrthoDB:EOG4Z65XM NextBio:970814 Genevestigator:P38199
GermOnline:YBL032W Uniprot:P38199
Length = 381
Score = 118 (46.6 bits), Expect = 0.00025, P = 0.00025
Identities = 44/171 (25%), Positives = 78/171 (45%)
Query: 36 YIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSH-----------EFFPGT-TDR 83
Y+R +V+N ++IGK G+TI ++ G +I S+ + FPG+ T+
Sbjct: 158 YVRLIVANSHISSIIGKAGATIKSLINKHGVKIVASKDFLPASDERIIEIQGFPGSITNV 217
Query: 84 IIMISGTI--DEILR-AVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKA 140
+I IS I D +R + + L + E + + T++ L +P G+IIG+
Sbjct: 218 LIEISEIILSDVDVRFSTERSYFPHLKKSSGEPTSPSTSSNTRIELKIPELYVGAIIGRG 277
Query: 141 GATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLK 191
IK+ ++ I + R D N R +T + ++ E +LLK
Sbjct: 278 MNRIKNLKTFTKTNIVVERKDDDDKDENFRKFIITSKFPKNVKLAESMLLK 328
Score = 102 (41.0 bits), Expect = 3.4e-11, Sum P(3) = 3.4e-11
Identities = 31/111 (27%), Positives = 58/111 (52%)
Query: 9 VPSPDVHGKRSTAPVKSLSSDP----TEKPTYI-RFLVSNPLAGAVIGKGGSTINDFQSQ 63
+P+ + +G S A + P T +PT R L+S A +IG GSTI+ ++
Sbjct: 13 IPTNNTNGGSSDAGSAATGGAPVVGTTAQPTINHRLLLSLKEAAKIIGTKGSTISRIRAA 72
Query: 64 SGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQ 114
+ +I +S E PG +DRI+ +G + + A+ ++D +L + + E++
Sbjct: 73 NAVKIGIS---EKVPGCSDRILSCAGNVINVANAIGDIVD-VLNKRNPENE 119
Score = 91 (37.1 bits), Expect = 3.4e-11, Sum P(3) = 3.4e-11
Identities = 24/52 (46%), Positives = 31/52 (59%)
Query: 108 ELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISR 159
E+ Q +D+G +RLIV NS SIIGKAGATIKS ++ I S+
Sbjct: 146 EIRDLQQLEDIGY---VRLIVANSHISSIIGKAGATIKSLINKHGVKIVASK 194
Score = 71 (30.1 bits), Expect = 9.0e-06, Sum P(2) = 9.0e-06
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 263 VADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSI 316
VA+ HI ++G+ G I + G +I S DF + ER + I G SI
Sbjct: 163 VANSHISSIIGKAGATIKSLINKHGVKIVASK--DFLPASDERIIEIQGFPGSI 214
Score = 69 (29.3 bits), Expect = 3.4e-11, Sum P(3) = 3.4e-11
Identities = 20/98 (20%), Positives = 45/98 (45%)
Query: 234 NTAAHYGPNM---GGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARI 290
+T Y P++ G + T + + + + ++G ++GRG I + + I
Sbjct: 234 STERSYFPHLKKSSGEPTSPSTSSNTR-IELKIPELYVGAIIGRGMNRIKNLKTFTKTNI 292
Query: 291 KVSDRGDFFSGTSERKVTISGP-QRSIRTAESMIMQKV 327
V + D + RK I+ ++++ AESM+++ +
Sbjct: 293 VVERKDDDDKDENFRKFIITSKFPKNVKLAESMLLKNL 330
>UNIPROTKB|F1MHR6 [details] [associations]
symbol:LOC505564 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:DAAA02019565 EMBL:DAAA02019566
IPI:IPI00701919 Ensembl:ENSBTAT00000027991 Uniprot:F1MHR6
Length = 708
Score = 134 (52.2 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 39/163 (23%), Positives = 78/163 (47%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAV 98
+ V + + G +IG+GG IN Q SG ++Q+S P +R + ++G + + +A
Sbjct: 110 YRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP---ERSVSLTGAPESVQKA- 165
Query: 99 DLVIDKLLTELHA------EDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQ 152
+++D +++ D A+ T +++P G +IGK G TIK + +
Sbjct: 166 KMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQE--R 223
Query: 153 AVIKISRLDHSYYGLN-DRLVTLTGTLDEQMRALELILLKLSE 194
A +K+ + N D+ + + G + +A E+++ L E
Sbjct: 224 AGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 266
Score = 112 (44.5 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 35/120 (29%), Positives = 61/120 (50%)
Query: 46 AGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKL 105
AG VIGKGG TI Q ++G ++ L + D+ + I G ++ +A ++V+D +
Sbjct: 206 AGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNV-DKPLRIIGDPYKVQQACEMVMD-I 263
Query: 106 LTELHAEDQAD--DVGTKTK--LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLD 161
L E D + G++ + + VP S G +IG++G IK +D+ I+ + D
Sbjct: 264 LRERDQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD 323
Score = 95 (38.5 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 27/93 (29%), Positives = 45/93 (48%)
Query: 240 GPNM--GGR---KFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSD 294
GP M GGR + Q N +T + G V+GRGG N+ I+Q +GA +++S
Sbjct: 364 GPGMPPGGRGRGRGQGNWGPPGGEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISR 423
Query: 295 RGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
+ + + I G + I A+ +I +K+
Sbjct: 424 QLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKI 456
Score = 66 (28.3 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 22/73 (30%), Positives = 32/73 (43%)
Query: 242 NMGGRKFQNNKDDRTNS-LTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFS 300
+ GG +N R + + V +G V+GR G I +I +G RI+ D
Sbjct: 268 DQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQ--D--D 323
Query: 301 GTSERKVT-ISGP 312
GT K+ I GP
Sbjct: 324 GTGPEKIAHIMGP 336
>UNIPROTKB|Q92945 [details] [associations]
symbol:KHSRP "Far upstream element-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005654 GO:GO:0006355 GO:GO:0003677
GO:GO:0006397 GO:GO:0006351 GO:GO:0003723 GO:GO:0051028
GO:GO:0000375 eggNOG:NOG300923 HOGENOM:HOG000231552
HOVERGEN:HBG000625 KO:K13210 InterPro:IPR015096 Pfam:PF09005
CTD:8570 EMBL:U94832 EMBL:AC011491 EMBL:AC011539 EMBL:BC085004
EMBL:AF093747 EMBL:AF093745 EMBL:AF093748 EMBL:U69126 EMBL:AB209662
IPI:IPI00479786 IPI:IPI00855957 RefSeq:NP_003676.2
UniGene:Hs.727344 PDB:2HH2 PDB:2HH3 PDB:2JVZ PDB:2OPU PDB:2OPV
PDB:4B8T PDBsum:2HH2 PDBsum:2HH3 PDBsum:2JVZ PDBsum:2OPU
PDBsum:2OPV PDBsum:4B8T ProteinModelPortal:Q92945 SMR:Q92945
DIP:DIP-48484N IntAct:Q92945 STRING:Q92945 PhosphoSite:Q92945
DMDM:160380711 REPRODUCTION-2DPAGE:Q92945 PaxDb:Q92945 PRIDE:Q92945
Ensembl:ENST00000398148 GeneID:8570 KEGG:hsa:8570 UCSC:uc002mer.4
GeneCards:GC19M006413 H-InvDB:HIX0040083 HGNC:HGNC:6316
HPA:HPA034739 MIM:603445 neXtProt:NX_Q92945 PharmGKB:PA30097
InParanoid:Q92945 OMA:QASGNCH PhylomeDB:Q92945 ChEMBL:CHEMBL1795105
ChiTaRS:KHSRP EvolutionaryTrace:Q92945 GenomeRNAi:8570
NextBio:32149 PMAP-CutDB:Q92945 ArrayExpress:Q92945 Bgee:Q92945
CleanEx:HS_KHSRP Genevestigator:Q92945 GermOnline:ENSG00000088247
Uniprot:Q92945
Length = 711
Score = 134 (52.2 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 39/163 (23%), Positives = 78/163 (47%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAV 98
+ V + + G +IG+GG IN Q SG ++Q+S P +R + ++G + + +A
Sbjct: 149 YRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP---ERSVSLTGAPESVQKA- 204
Query: 99 DLVIDKLLTELHA------EDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQ 152
+++D +++ D A+ T +++P G +IGK G TIK + +
Sbjct: 205 KMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQE--R 262
Query: 153 AVIKISRLDHSYYGLN-DRLVTLTGTLDEQMRALELILLKLSE 194
A +K+ + N D+ + + G + +A E+++ L E
Sbjct: 263 AGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 305
Score = 112 (44.5 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 35/120 (29%), Positives = 61/120 (50%)
Query: 46 AGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKL 105
AG VIGKGG TI Q ++G ++ L + D+ + I G ++ +A ++V+D +
Sbjct: 245 AGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNV-DKPLRIIGDPYKVQQACEMVMD-I 302
Query: 106 LTELHAEDQAD--DVGTKTK--LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLD 161
L E D + G++ + + VP S G +IG++G IK +D+ I+ + D
Sbjct: 303 LRERDQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD 362
Score = 95 (38.5 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 27/93 (29%), Positives = 45/93 (48%)
Query: 240 GPNM--GGR---KFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSD 294
GP M GGR + Q N +T + G V+GRGG N+ I+Q +GA +++S
Sbjct: 403 GPGMPPGGRGRGRGQGNWGPPGGEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISR 462
Query: 295 RGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
+ + + I G + I A+ +I +K+
Sbjct: 463 QLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKI 495
Score = 66 (28.3 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 22/73 (30%), Positives = 32/73 (43%)
Query: 242 NMGGRKFQNNKDDRTNS-LTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFS 300
+ GG +N R + + V +G V+GR G I +I +G RI+ D
Sbjct: 307 DQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQ--D--D 362
Query: 301 GTSERKVT-ISGP 312
GT K+ I GP
Sbjct: 363 GTGPEKIAHIMGP 375
>UNIPROTKB|I3LQS0 [details] [associations]
symbol:HNRNPK "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072369 "regulation of lipid transport by positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA] [GO:0045716 "positive regulation of
low-density lipoprotein particle receptor biosynthetic process"
evidence=IEA] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IEA] [GO:0001077 "RNA polymerase II
core promoter proximal region sequence-specific DNA binding
transcription factor activity involved in positive regulation of
transcription" evidence=IEA] [GO:0000978 "RNA polymerase II core
promoter proximal region sequence-specific DNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0000978 GO:GO:0001077 GO:GO:0000790
GO:GO:0048260 GO:GO:0071013 GO:GO:0045716 GO:GO:0010988
GeneTree:ENSGT00550000074311 OMA:KALRTDX GO:GO:0072369
InterPro:IPR012987 Pfam:PF08067 EMBL:FP312814
Ensembl:ENSSSCT00000025854 Uniprot:I3LQS0
Length = 444
Score = 124 (48.7 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 56/216 (25%), Positives = 92/216 (42%)
Query: 31 TEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQL--SRSHEFFPGTTDRIIMIS 88
T++ +R L+ + AGAVIGKGG I ++ A + + S E + I I
Sbjct: 42 TDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIG 101
Query: 89 GTIDEILRAVD----LVIDKLLTELHAEDQADDV-------GTK--TKLRLIVPNSSCGS 135
+ +I+ ++ L ++L E A + G+ +LRL++ S G
Sbjct: 102 EILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGG 161
Query: 136 IIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSED 195
IIG GA IK +++Q IK+ DR+V + G D + +++IL +SE
Sbjct: 162 IIGVKGAKIKELRENTQTTIKL--FQECCPQSTDRVVLIGGKPDRVVECIKIILDLISES 219
Query: 196 TLYSQTMTV-P------YTYAG--VFFSGFHGMPYG 222
+ + P Y Y G + F G P G
Sbjct: 220 PIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVG 255
Score = 100 (40.3 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 24/90 (26%), Positives = 45/90 (50%)
Query: 244 GGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTS 303
GGR + + + + + G ++G+GG+ I +I SGA IK+ + G+
Sbjct: 356 GGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSE 412
Query: 304 ERKVTISGPQRSIRTAESMIMQKVAYASDR 333
+R +TI+G Q I+ A+ ++ V S +
Sbjct: 413 DRIITITGTQDQIQNAQYLLQNSVKQYSGK 442
Score = 73 (30.8 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 25/99 (25%), Positives = 50/99 (50%)
Query: 106 LTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYY 165
+ E A ++ + +LR+++ + + G++IGK G IK+ D A + + D S
Sbjct: 30 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP--DSS-- 85
Query: 166 GLNDRLVTLTGTLDEQMRALELILLKLSEDT-LYSQTMT 203
G +R+++++ ++ L+ I+ L E L S T T
Sbjct: 86 G-PERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 123
>UNIPROTKB|E2QVT3 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
Ensembl:ENSCAFT00000029641 Uniprot:E2QVT3
Length = 743
Score = 134 (52.2 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 39/163 (23%), Positives = 78/163 (47%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAV 98
+ V + + G +IG+GG IN Q SG ++Q+S P +R + ++G + + +A
Sbjct: 146 YRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP---ERSVSLTGAPESVQKA- 201
Query: 99 DLVIDKLLTELHA------EDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQ 152
+++D +++ D A+ T +++P G +IGK G TIK + +
Sbjct: 202 KMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQE--R 259
Query: 153 AVIKISRLDHSYYGLN-DRLVTLTGTLDEQMRALELILLKLSE 194
A +K+ + N D+ + + G + +A E+++ L E
Sbjct: 260 AGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 302
Score = 112 (44.5 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 35/120 (29%), Positives = 61/120 (50%)
Query: 46 AGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKL 105
AG VIGKGG TI Q ++G ++ L + D+ + I G ++ +A ++V+D +
Sbjct: 242 AGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNV-DKPLRIIGDPYKVQQACEMVMD-I 299
Query: 106 LTELHAEDQAD--DVGTKTK--LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLD 161
L E D + G++ + + VP S G +IG++G IK +D+ I+ + D
Sbjct: 300 LRERDQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD 359
Score = 95 (38.5 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 27/93 (29%), Positives = 45/93 (48%)
Query: 240 GPNM--GGR---KFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSD 294
GP M GGR + Q N +T + G V+GRGG N+ I+Q +GA +++S
Sbjct: 400 GPGMPPGGRGRGRGQGNWGPPGGEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISR 459
Query: 295 RGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
+ + + I G + I A+ +I +K+
Sbjct: 460 QLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKI 492
Score = 66 (28.3 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 22/73 (30%), Positives = 32/73 (43%)
Query: 242 NMGGRKFQNNKDDRTNS-LTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFS 300
+ GG +N R + + V +G V+GR G I +I +G RI+ D
Sbjct: 304 DQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQ--D--D 359
Query: 301 GTSERKVT-ISGP 312
GT K+ I GP
Sbjct: 360 GTGPEKIAHIMGP 372
>UNIPROTKB|F1SBT6 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:CU929921
Ensembl:ENSSSCT00000014785 Uniprot:F1SBT6
Length = 747
Score = 134 (52.2 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 39/163 (23%), Positives = 78/163 (47%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAV 98
+ V + + G +IG+GG IN Q SG ++Q+S P +R + ++G + + +A
Sbjct: 149 YRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP---ERSVSLTGAPESVQKA- 204
Query: 99 DLVIDKLLTELHA------EDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQ 152
+++D +++ D A+ T +++P G +IGK G TIK + +
Sbjct: 205 KMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQE--R 262
Query: 153 AVIKISRLDHSYYGLN-DRLVTLTGTLDEQMRALELILLKLSE 194
A +K+ + N D+ + + G + +A E+++ L E
Sbjct: 263 AGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 305
Score = 112 (44.5 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 35/120 (29%), Positives = 61/120 (50%)
Query: 46 AGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKL 105
AG VIGKGG TI Q ++G ++ L + D+ + I G ++ +A ++V+D +
Sbjct: 245 AGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNV-DKPLRIIGDPYKVQQACEMVMD-I 302
Query: 106 LTELHAEDQAD--DVGTKTK--LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLD 161
L E D + G++ + + VP S G +IG++G IK +D+ I+ + D
Sbjct: 303 LRERDQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD 362
Score = 95 (38.5 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 27/93 (29%), Positives = 45/93 (48%)
Query: 240 GPNM--GGR---KFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSD 294
GP M GGR + Q N +T + G V+GRGG N+ I+Q +GA +++S
Sbjct: 403 GPGMPPGGRGRGRGQGNWGPPGGEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISR 462
Query: 295 RGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
+ + + I G + I A+ +I +K+
Sbjct: 463 QLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKI 495
Score = 66 (28.3 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 22/73 (30%), Positives = 32/73 (43%)
Query: 242 NMGGRKFQNNKDDRTNS-LTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFS 300
+ GG +N R + + V +G V+GR G I +I +G RI+ D
Sbjct: 307 DQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQ--D--D 362
Query: 301 GTSERKVT-ISGP 312
GT K+ I GP
Sbjct: 363 GTGPEKIAHIMGP 375
>UNIPROTKB|G8JLA5 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 ProteinModelPortal:G8JLA5 SMR:G8JLA5
Ensembl:ENST00000347476 Bgee:G8JLA5 Uniprot:G8JLA5
Length = 109
Score = 156 (60.0 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 31/84 (36%), Positives = 55/84 (65%)
Query: 123 KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQM 182
++++IVPNS+ G IIGK GAT+K+ M+ S A +++S+ L +R+VT++G ++
Sbjct: 27 QVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGI-NLQERVVTVSGEPEQNR 85
Query: 183 RALELILLKLSEDTLYSQTMTVPY 206
+A+ELI+ K+ ED + + Y
Sbjct: 86 KAVELIIQKIQEDPQSGSCLNISY 109
Score = 138 (53.6 bits), Expect = 7.3e-09, P = 7.3e-09
Identities = 32/89 (35%), Positives = 50/89 (56%)
Query: 20 TAPVKSLSSDPTEKPTYIR---FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEF 76
T PV L T P I+ +V N AG +IGKGG+T+ QSGA +QLS+ +
Sbjct: 8 TEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDG 67
Query: 77 FPGTTDRIIMISGTIDEILRAVDLVIDKL 105
+R++ +SG ++ +AV+L+I K+
Sbjct: 68 I-NLQERVVTVSGEPEQNRKAVELIIQKI 95
Score = 109 (43.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 254 DRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQ 313
DR + I V + G ++G+GG + + + SGA +++S + D + ER VT+SG
Sbjct: 23 DRIKQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGIN-LQERVVTVSGEP 81
Query: 314 RSIRTAESMIMQKV 327
R A +I+QK+
Sbjct: 82 EQNRKAVELIIQKI 95
>UNIPROTKB|E1BX03 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010628 "positive regulation of gene
expression" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:AADN02012752
IPI:IPI00679838 Ensembl:ENSGALT00000014525 ArrayExpress:E1BX03
Uniprot:E1BX03
Length = 645
Score = 137 (53.3 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 40/155 (25%), Positives = 78/155 (50%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEIL--- 95
+ V + + G +IG+GG I+ Q +SG +IQ++ + + G +R M++GT + +
Sbjct: 102 YKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPALDS-GGLPERSCMLTGTPESVQSAK 160
Query: 96 RAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVI 155
R +D +++K D G + +++P S G +IGK G TIK + +A +
Sbjct: 161 RLLDQIVEKG-RPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQE--RAGV 216
Query: 156 KISRLDHSYYGLN-DRLVTLTGTLDEQMRALELIL 189
K+ + D+ + +TG + +A E++L
Sbjct: 217 KMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVL 251
Score = 133 (51.9 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 61/194 (31%), Positives = 84/194 (43%)
Query: 47 GAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTT-DRIIMISGTIDEILRAVDLVIDKL 105
G VIG+ G I Q+ +G RIQ GTT DRI I+G D A +++ D L
Sbjct: 287 GIVIGRNGEMIKKIQNDAGVRIQFKPDD----GTTPDRIAQITGPPDRCQHAAEIITD-L 341
Query: 106 LTELHAED---------------QAD-DVGTKTKLR---LIVPNSSCGSIIGKAGATIKS 146
L + A + Q + ++G L+ IVP G IIGK G TIKS
Sbjct: 342 LRSVQAGNPGGPGGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKS 401
Query: 147 FMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPY 206
S A I++ R N ++ T+ GT + A +LI K+ + VP+
Sbjct: 402 ISQQSGARIELQRNPPPNADPNMKMFTIRGTPQQIDYARQLIEEKIG-GPVNPLGPPVPH 460
Query: 207 TYAGVFFSGFHGMP 220
GV G HG P
Sbjct: 461 GPHGVV-PGPHGPP 473
Score = 126 (49.4 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 37/147 (25%), Positives = 73/147 (49%)
Query: 46 AGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKL 105
AG VIGKGG TI Q ++G ++ + + G D+ + I+G ++ +A ++V++ +
Sbjct: 196 AGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA-DKPLRITGDPYKVQQAKEMVLELI 254
Query: 106 LTELHAEDQADDVGTKTK----LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLD 161
+ + ++ G++ + + +P + G +IG+ G IK +D+ I+ D
Sbjct: 255 RDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD 314
Query: 162 HSYYGLNDRLVTLTGTLDEQMRALELI 188
+ DR+ +TG D A E+I
Sbjct: 315 GT---TPDRIAQITGPPDRCQHAAEII 338
Score = 87 (35.7 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 269 GFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
G ++G+GG I ISQ SGARI++ + + + TI G + I A +I +K+
Sbjct: 389 GLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKMFTIRGTPQQIDYARQLIEEKI 447
Score = 66 (28.3 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 24/87 (27%), Positives = 39/87 (44%)
Query: 242 NMGG-RKFQNNKDDR---TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVS-DRG 296
+ GG R+ +N R + + + +G V+GR G I +I +G RI+ D G
Sbjct: 256 DQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDG 315
Query: 297 DFFSGTSERKVTISGPQRSIRTAESMI 323
T +R I+GP + A +I
Sbjct: 316 T----TPDRIAQITGPPDRCQHAAEII 338
>ZFIN|ZDB-GENE-030131-4357 [details] [associations]
symbol:khsrp "KH-type splicing regulatory protein"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-030131-4357 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:AL929150 IPI:IPI00482681
Ensembl:ENSDART00000038330 ArrayExpress:F1QXP8 Bgee:F1QXP8
Uniprot:F1QXP8
Length = 666
Score = 135 (52.6 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 39/154 (25%), Positives = 76/154 (49%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAV 98
+ V + + G +IG+GG IN Q SG ++Q++ P DR + I+G + I +A
Sbjct: 111 YRVPDGMVGLIIGRGGEQINKIQQDSGCKVQIAPDSGGLP---DRSVSITGGPEAIQKA- 166
Query: 99 DLVIDKLLTELHAEDQA---DDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVI 155
+++D +++ + G+ +++P G IIGK G TIK + +A +
Sbjct: 167 KMMLDDIVSRGRGTPPSFHESTNGSGHMQEMVIPAGKAGLIIGKGGETIKQLQE--RAGV 224
Query: 156 KISRLDHSYYGLN-DRLVTLTGTLDEQMRALELI 188
K+ + + G N D+ + + G + +A E++
Sbjct: 225 KMILIQDASQGPNMDKPLRIIGDPYKVQQAREMV 258
Score = 97 (39.2 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 39/158 (24%), Positives = 71/158 (44%)
Query: 46 AGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKL 105
AG +IGKGG TI Q ++G ++ L + P D+ + I G ++ +A ++V + L
Sbjct: 204 AGLIIGKGGETIKQLQERAGVKMILIQDASQGPNM-DKPLRIIGDPYKVQQAREMVQEIL 262
Query: 106 LTELHAEDQADDVGTKTK---------------LRLIVPNSSCGSIIGKAGATIKSFMDD 150
H + ++ G++ + + VP S G +IG++G IK +D
Sbjct: 263 RERDHPGFERNEYGSRMGGGGGGGGGGGGGGGGIEVPVPRHSVGVVIGRSGEMIKKIQND 322
Query: 151 SQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELI 188
+ I+ D + G D++ + G D A +I
Sbjct: 323 AGVRIQFKPDDGT--G-PDKIAHIMGPPDRCEHAASII 357
Score = 89 (36.4 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 257 NSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSI 316
+ +T + G V+GRGG N+ I+Q +GA +++S + + + TI G + I
Sbjct: 403 SEMTFSIPAHKCGLVIGRGGENVKAINQQTGAFVEISRQPPPNGDPNFKLFTIRGSPQQI 462
Query: 317 RTAESMIMQKV 327
A+ +I K+
Sbjct: 463 DHAKQLIEDKI 473
Score = 74 (31.1 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 21/68 (30%), Positives = 31/68 (45%)
Query: 47 GAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLL 106
G VIG+ G I Q+ +G RIQ P D+I I G D A +I++LL
Sbjct: 306 GVVIGRSGEMIKKIQNDAGVRIQFKPDDGTGP---DKIAHIMGPPDRCEHAAS-IINELL 361
Query: 107 TELHAEDQ 114
+ ++
Sbjct: 362 QSIRVREE 369
Score = 68 (29.0 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 26/87 (29%), Positives = 36/87 (41%)
Query: 239 YGPNMGGRKFQNNKDDRTNS-LTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGD 297
YG MGG + + V +G V+GR G I +I +G RI+ + D
Sbjct: 275 YGSRMGGGGGGGGGGGGGGGGIEVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQF--KPD 332
Query: 298 FFSGTSERKVT-ISGPQRSIRTAESMI 323
GT K+ I GP A S+I
Sbjct: 333 --DGTGPDKIAHIMGPPDRCEHAASII 357
>FB|FBgn0015907 [details] [associations]
symbol:bl "bancal" species:7227 "Drosophila melanogaster"
[GO:0030529 "ribonucleoprotein complex" evidence=ISS] [GO:0003729
"mRNA binding" evidence=NAS;TAS] [GO:0005634 "nucleus"
evidence=IC;IDA;TAS] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000785 "chromatin" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=TAS]
[GO:0045165 "cell fate commitment" evidence=TAS] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0007446 "imaginal disc growth"
evidence=TAS] [GO:0008134 "transcription factor binding"
evidence=TAS] [GO:0035107 "appendage morphogenesis" evidence=TAS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0008283 GO:GO:0003729 GO:GO:0000785 GO:GO:0030529
GO:GO:0008134 GO:GO:0045165 GO:GO:0000381 GO:GO:0007446 HSSP:P61978
GO:GO:0035062 FlyBase:FBgn0015907 ChiTaRS:bl GO:GO:0035107
EMBL:AF275629 ProteinModelPortal:Q7KHL0 SMR:Q7KHL0 STRING:Q7KHL0
PRIDE:Q7KHL0 InParanoid:Q7KHL0 ArrayExpress:Q7KHL0 Bgee:Q7KHL0
Uniprot:Q7KHL0
Length = 508
Score = 124 (48.7 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 38/113 (33%), Positives = 55/113 (48%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
+R L+ + +AGAVIGKGG I ++Q A + + S P +R I IS I+ L
Sbjct: 25 VRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDSQG--P---ERTIQISADIESTLE 79
Query: 97 AVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMD 149
+I ++L D+ DV RL++ S G +IGK G IK D
Sbjct: 80 ----IITEMLKYFEERDEDFDV------RLLIHQSLAGCVIGKGGQKIKEIRD 122
Score = 105 (42.0 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 24/66 (36%), Positives = 35/66 (53%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
+R L+ LAG VIGKGG I + + + G R L P +TDR++ G +++
Sbjct: 97 VRLLIHQSLAGCVIGKGGQKIKEIRDRIGCRF-LKVFSNVAPQSTDRVVQTVGKQSQVIE 155
Query: 97 AVDLVI 102
AV VI
Sbjct: 156 AVREVI 161
Score = 97 (39.2 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 27/93 (29%), Positives = 44/93 (47%)
Query: 237 AHYGPNMGGRKFQN--NKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSD 294
A+ GPN N D NS + + E G ++G+GG I I S A I + +
Sbjct: 399 ANGGPNGSPNAATNVPQGHDPNNSTQVTIPKELAGAIIGKGGGRIRRIRNESSAYITIDE 458
Query: 295 RGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
+++R +TISG + I+ A+ ++ Q V
Sbjct: 459 P---LPNSNDRIITISGTPKQIQMAQYLLQQSV 488
Score = 93 (37.8 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 114 QADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVT 173
Q D T++ +P G+IIGK G I+ ++S A I I D NDR++T
Sbjct: 415 QGHDPNNSTQVT--IPKELAGAIIGKGGGRIRRIRNESSAYITI---DEPLPNSNDRIIT 469
Query: 174 LTGTLDEQMRALELIL 189
++GT +Q++ + +L
Sbjct: 470 ISGT-PKQIQMAQYLL 484
Score = 71 (30.1 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 21/100 (21%), Positives = 49/100 (49%)
Query: 112 EDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRL 171
+DQ + ++ +R+++P+S G++IGK G I+ +A + + D S G +R
Sbjct: 13 QDQKRNRRSEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSV---DDSQ-G-PERT 67
Query: 172 VTLTGTLDEQMRALELILLKLSE-DTLYSQTMTVPYTYAG 210
+ ++ ++ + + +L E D + + + + AG
Sbjct: 68 IQISADIESTLEIITEMLKYFEERDEDFDVRLLIHQSLAG 107
Score = 39 (18.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 18/64 (28%), Positives = 26/64 (40%)
Query: 208 YAGVFFSGFHGMPYGXXXXXXXXXXHNTAAHYGPN-MGGRKFQNNKDDRTNSL-TIGVAD 265
+AG F G G P+G N GP+ GG + TNSL ++G
Sbjct: 291 FAGNSFGGGAGGPFGGGSFG------NNGFGGGPSDFGGNSGNFGQAQGTNSLPSLGSFS 344
Query: 266 EHIG 269
++ G
Sbjct: 345 QNQG 348
>RGD|621828 [details] [associations]
symbol:Khsrp "KH-type splicing regulatory protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030425 "dendrite" evidence=IDA] [GO:0043025
"neuronal cell body" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621828 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0008380 GO:GO:0003677 GO:GO:0043025 GO:GO:0030425
GO:GO:0006397 GO:GO:0006351 GO:GO:0003730 GO:GO:0051028
HOVERGEN:HBG000625 KO:K13210 InterPro:IPR015096 Pfam:PF09005
CTD:8570 EMBL:AF308818 IPI:IPI00200920 RefSeq:NP_598286.1
UniGene:Rn.92643 ProteinModelPortal:Q99PF5 SMR:Q99PF5
PhosphoSite:Q99PF5 REPRODUCTION-2DPAGE:Q99PF5 PRIDE:Q99PF5
GeneID:171137 KEGG:rno:171137 NextBio:621918 Genevestigator:Q99PF5
Uniprot:Q99PF5
Length = 721
Score = 134 (52.2 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 39/163 (23%), Positives = 78/163 (47%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAV 98
+ V + + G +IG+GG IN Q SG ++Q+S P +R + ++G + + +A
Sbjct: 150 YRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP---ERSVSLTGAPESVQKA- 205
Query: 99 DLVIDKLLTELHA------EDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQ 152
+++D +++ D A+ T +++P G +IGK G TIK + +
Sbjct: 206 KMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQE--R 263
Query: 153 AVIKISRLDHSYYGLN-DRLVTLTGTLDEQMRALELILLKLSE 194
A +K+ + N D+ + + G + +A E+++ L E
Sbjct: 264 AGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 306
Score = 113 (44.8 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 35/120 (29%), Positives = 61/120 (50%)
Query: 46 AGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKL 105
AG VIGKGG TI Q ++G ++ L + D+ + I G ++ +A ++V+D +
Sbjct: 246 AGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNV-DKPLRIIGDPYKVQQACEMVMD-I 303
Query: 106 LTELHAEDQAD--DVGTKTK--LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLD 161
L E D + G++ + + VP S G +IG++G IK +D+ I+ + D
Sbjct: 304 LRERDQGGFGDRNEYGSRVGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD 363
Score = 90 (36.7 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 26/92 (28%), Positives = 44/92 (47%)
Query: 241 PNM--GGR---KFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDR 295
P M GGR + Q N +T + G V+GRGG N+ I+Q +GA +++S +
Sbjct: 405 PGMPPGGRGRGRGQGNWGPPGGEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQ 464
Query: 296 GDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
+ + I G + I A+ +I +K+
Sbjct: 465 LPPNGDPNFKLFVIRGSPQQIDHAKQLIEEKI 496
Score = 67 (28.6 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 22/73 (30%), Positives = 32/73 (43%)
Query: 242 NMGGRKFQNNKDDRTNS-LTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFS 300
+ GG +N R + + V +G V+GR G I +I +G RI+ D
Sbjct: 308 DQGGFGDRNEYGSRVGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQ--D--D 363
Query: 301 GTSERKVT-ISGP 312
GT K+ I GP
Sbjct: 364 GTGPEKIAHIMGP 376
>MGI|MGI:1336214 [details] [associations]
symbol:Khsrp "KH-type splicing regulatory protein"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0030425 "dendrite"
evidence=ISO] [GO:0043025 "neuronal cell body" evidence=ISO]
[GO:0051028 "mRNA transport" evidence=IEA] Reactome:REACT_78136
Reactome:REACT_88316 InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS00178 PROSITE:PS50084 SMART:SM00322
MGI:MGI:1336214 GO:GO:0005829 GO:GO:0005634 GO:GO:0006355
GO:GO:0008380 GO:GO:0003677 GO:GO:0006397 GO:GO:0006351
GO:GO:0003723 GO:GO:0051028 GO:GO:0010494 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 CTD:8570 OMA:QASGNCH EMBL:AK156541
EMBL:CT571247 EMBL:BC064454 EMBL:BC108414 IPI:IPI00462934
RefSeq:NP_034743.3 UniGene:Mm.34296 HSSP:Q91WJ8
ProteinModelPortal:Q3U0V1 SMR:Q3U0V1 IntAct:Q3U0V1 STRING:Q3U0V1
PhosphoSite:Q3U0V1 PaxDb:Q3U0V1 PRIDE:Q3U0V1 DNASU:16549
Ensembl:ENSMUST00000007814 GeneID:16549 KEGG:mmu:16549
UCSC:uc008ddr.2 GeneTree:ENSGT00650000093048 InParanoid:Q3U0V1
OrthoDB:EOG451DQX NextBio:290019 Bgee:Q3U0V1 CleanEx:MM_KHSRP
Genevestigator:Q3U0V1 Uniprot:Q3U0V1
Length = 748
Score = 134 (52.2 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 39/163 (23%), Positives = 78/163 (47%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAV 98
+ V + + G +IG+GG IN Q SG ++Q+S P +R + ++G + + +A
Sbjct: 150 YRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP---ERSVSLTGAPESVQKA- 205
Query: 99 DLVIDKLLTELHA------EDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQ 152
+++D +++ D A+ T +++P G +IGK G TIK + +
Sbjct: 206 KMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQE--R 263
Query: 153 AVIKISRLDHSYYGLN-DRLVTLTGTLDEQMRALELILLKLSE 194
A +K+ + N D+ + + G + +A E+++ L E
Sbjct: 264 AGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 306
Score = 113 (44.8 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 35/120 (29%), Positives = 61/120 (50%)
Query: 46 AGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKL 105
AG VIGKGG TI Q ++G ++ L + D+ + I G ++ +A ++V+D +
Sbjct: 246 AGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNV-DKPLRIIGDPYKVQQACEMVMD-I 303
Query: 106 LTELHAEDQAD--DVGTKTK--LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLD 161
L E D + G++ + + VP S G +IG++G IK +D+ I+ + D
Sbjct: 304 LRERDQGGFGDRNEYGSRVGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD 363
Score = 90 (36.7 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 26/92 (28%), Positives = 44/92 (47%)
Query: 241 PNM--GGR---KFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDR 295
P M GGR + Q N +T + G V+GRGG N+ I+Q +GA +++S +
Sbjct: 405 PGMPPGGRGRGRGQGNWGPPGGEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQ 464
Query: 296 GDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
+ + I G + I A+ +I +K+
Sbjct: 465 LPPNGDPNFKLFVIRGSPQQIDHAKQLIEEKI 496
Score = 67 (28.6 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 22/73 (30%), Positives = 32/73 (43%)
Query: 242 NMGGRKFQNNKDDRTNS-LTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFS 300
+ GG +N R + + V +G V+GR G I +I +G RI+ D
Sbjct: 308 DQGGFGDRNEYGSRVGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQ--D--D 363
Query: 301 GTSERKVT-ISGP 312
GT K+ I GP
Sbjct: 364 GTGPEKIAHIMGP 376
>ZFIN|ZDB-GENE-040426-2159 [details] [associations]
symbol:fubp1 "far upstream element (FUSE) binding
protein 1" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-2159 GO:GO:0003723 CTD:8880 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 OrthoDB:EOG4STS4G
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
OMA:NGQEGDQ EMBL:CT027589 EMBL:BC064649 IPI:IPI00484709
RefSeq:NP_998309.1 UniGene:Dr.76240 SMR:Q6P2A9
Ensembl:ENSDART00000081442 Ensembl:ENSDART00000128153 GeneID:406418
KEGG:dre:406418 InParanoid:Q6P2A9 NextBio:20818020 Uniprot:Q6P2A9
Length = 642
Score = 135 (52.6 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 42/151 (27%), Positives = 74/151 (49%)
Query: 46 AGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKL 105
AG VIGKGG TI Q ++G ++ + + G D+ + ISG ++ +A D+V+D L
Sbjct: 186 AGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA-DKPLRISGDPFKVQQAKDMVMD-L 243
Query: 106 LTELHAEDQADDVGTKT--------KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKI 157
+ + +Q + G++ L + VP + G +IG++G IK +D+ I+
Sbjct: 244 IRDQGFREQRGEYGSRAGGGGGGGESLDVPVPRFAVGIVIGRSGEMIKKIQNDTGVRIQF 303
Query: 158 SRLDHSYYGLNDRLVTLTGTLDEQMRALELI 188
D S +R+ + G D A ++I
Sbjct: 304 KPDDGS---TPERIAQIMGPPDRAQHAADII 331
Score = 128 (50.1 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 40/155 (25%), Positives = 76/155 (49%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAV 98
F V + + G +IG+GG I+ Q +SG +IQ++ P DR + ++G+ D I+ A
Sbjct: 94 FKVPDGMVGFIIGRGGEQISRLQQESGCKIQIAPDSGGMP---DRSVTLTGSPDAIMTAK 150
Query: 99 DL---VIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVI 155
L +++K A D G +++P S G +IGK G TIK + +A +
Sbjct: 151 RLLSEIVEKGRPS-PAFHHNDGPGMSVH-EMMIPASKAGLVIGKGGETIKQLQE--RAGV 206
Query: 156 KISRLDHSYYGLN-DRLVTLTGTLDEQMRALELIL 189
K+ + D+ + ++G + +A ++++
Sbjct: 207 KMVMIQDGPQNTGADKPLRISGDPFKVQQAKDMVM 241
Score = 86 (35.3 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 260 TIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTA 319
T V G ++G+GG I ISQ SGARI++ S + + T+ G + I A
Sbjct: 378 TFTVPTMKTGLIIGKGGETIKNISQQSGARIELQRNPPPNSDPNIKIFTVRGSPQQIDYA 437
Query: 320 ESMIMQKV 327
++ +K+
Sbjct: 438 RQLVEEKI 445
Score = 83 (34.3 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 47 GAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLL 106
G VIG+ G I Q+ +G RIQ T +RI I G D A D++ D LL
Sbjct: 280 GIVIGRSGEMIKKIQNDTGVRIQFKPDDG---STPERIAQIMGPPDRAQHAADIITD-LL 335
Query: 107 TELHA 111
+ A
Sbjct: 336 RSVQA 340
Score = 70 (29.7 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 23/67 (34%), Positives = 31/67 (46%)
Query: 258 SLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVS-DRGDFFSGTSERKVTISGPQRSI 316
SL + V +G V+GR G I +I +G RI+ D G T ER I GP
Sbjct: 269 SLDVPVPRFAVGIVIGRSGEMIKKIQNDTGVRIQFKPDDGS----TPERIAQIMGPPDRA 324
Query: 317 RTAESMI 323
+ A +I
Sbjct: 325 QHAADII 331
>TAIR|locus:2043530 [details] [associations]
symbol:AT2G25970 "AT2G25970" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005829 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 EMBL:AC004747 EMBL:AC005395
eggNOG:NOG300923 KO:K13210 HSSP:Q9UNW9 EMBL:AY078954 EMBL:AK226845
IPI:IPI00540360 PIR:T02627 RefSeq:NP_180167.1 UniGene:At.21555
ProteinModelPortal:O82762 SMR:O82762 STRING:O82762 PaxDb:O82762
PRIDE:O82762 ProMEX:O82762 EnsemblPlants:AT2G25970.1 GeneID:817137
KEGG:ath:AT2G25970 TAIR:At2g25970 HOGENOM:HOG000242545
InParanoid:O82762 OMA:AANSTQD PhylomeDB:O82762
ProtClustDB:CLSN2913011 ArrayExpress:O82762 Genevestigator:O82762
Uniprot:O82762
Length = 632
Score = 175 (66.7 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 68/220 (30%), Positives = 104/220 (47%)
Query: 6 SSYVPSPDVHGKR--STAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQ 63
SSY PS GK+ T P S + + T + + N G +IGKGG TI Q Q
Sbjct: 107 SSY-PS---EGKQMSGTVPSSIPVSYGSFQGTTKKIDIPNMRVGVIIGKGGETIKYLQLQ 162
Query: 64 SGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGT--- 120
SGA+IQ++R + P R + ++GT D+I +A L+ D +L E A + A G
Sbjct: 163 SGAKIQVTRDMDADPNCATRTVDLTGTPDQISKAEQLITD-VLQEAEAGNTAGSGGGGGR 221
Query: 121 -------KTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYG--LNDRL 171
+ + +PN+ G IIGK G TIKS + A I++ L H G +R
Sbjct: 222 RMGGQAGADQFVMKIPNNKVGLIIGKGGETIKSMQAKTGARIQVIPL-HLPPGDPTPERT 280
Query: 172 VTLTGTLDEQMRALELILLKLS-EDTLYSQTMTVPYTYAG 210
+ + G ++ A +L+ +S E+ + + M Y G
Sbjct: 281 LQIDGITEQIEHAKQLVNEIISGENRMRNSAMGGGYPQQG 320
>RGD|1591892 [details] [associations]
symbol:Fubp1 "far upstream element (FUSE) binding protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 RGD:1591892
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0003723 CTD:8880 eggNOG:NOG300923 HOVERGEN:HBG000625
KO:K13210 InterPro:IPR015096 Pfam:PF09005 EMBL:BC107942
IPI:IPI00373591 RefSeq:NP_001032742.1 UniGene:Rn.177078
ProteinModelPortal:Q32PX7 SMR:Q32PX7 STRING:Q32PX7
PhosphoSite:Q32PX7 PRIDE:Q32PX7 GeneID:654496 KEGG:rno:654496
NextBio:714902 Genevestigator:Q32PX7 Uniprot:Q32PX7
Length = 639
Score = 136 (52.9 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 62/193 (32%), Positives = 84/193 (43%)
Query: 47 GAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTT-DRIIMISGTIDEILRAVDLVIDKL 105
G VIG+ G I Q+ +G RIQ GTT DRI I+G D A +++ D L
Sbjct: 283 GIVIGRNGEMIKKIQNDAGVRIQFKPDD----GTTPDRIAQITGPPDRCQHAAEIITD-L 337
Query: 106 LTELHAED--------------QAD-DVGTKTKLR---LIVPNSSCGSIIGKAGATIKSF 147
L + A + Q + ++G L+ IVP G IIGK G TIKS
Sbjct: 338 LRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSI 397
Query: 148 MDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPYT 207
S A I++ R N +L T+ GT + A +LI K+ + VP+
Sbjct: 398 SQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIG-GPVNPLGPPVPHG 456
Query: 208 YAGVFFSGFHGMP 220
GV G HG P
Sbjct: 457 PHGV--PGPHGPP 467
Score = 134 (52.2 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 40/155 (25%), Positives = 76/155 (49%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEIL--- 95
+ V + + G +IG+GG I+ Q +SG +IQ++ P +R M++GT + +
Sbjct: 100 YKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLP---ERSCMLTGTPESVQSAK 156
Query: 96 RAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVI 155
R +D +++K D G + +++P S G +IGK G TIK + +A +
Sbjct: 157 RLLDQIVEKG-RPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQE--RAGV 212
Query: 156 KISRLDHSYYGLN-DRLVTLTGTLDEQMRALELIL 189
K+ + D+ + +TG + +A E++L
Sbjct: 213 KMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVL 247
Score = 126 (49.4 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 37/147 (25%), Positives = 73/147 (49%)
Query: 46 AGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKL 105
AG VIGKGG TI Q ++G ++ + + G D+ + I+G ++ +A ++V++ +
Sbjct: 192 AGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA-DKPLRITGDPYKVQQAKEMVLELI 250
Query: 106 LTELHAEDQADDVGTKTK----LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLD 161
+ + ++ G++ + + +P + G +IG+ G IK +D+ I+ D
Sbjct: 251 RDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD 310
Query: 162 HSYYGLNDRLVTLTGTLDEQMRALELI 188
+ DR+ +TG D A E+I
Sbjct: 311 GT---TPDRIAQITGPPDRCQHAAEII 334
Score = 86 (35.3 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 269 GFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
G ++G+GG I ISQ SGARI++ + + + TI G + I A +I +K+
Sbjct: 384 GLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 442
Score = 66 (28.3 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 24/87 (27%), Positives = 39/87 (44%)
Query: 242 NMGG-RKFQNNKDDR---TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVS-DRG 296
+ GG R+ +N R + + + +G V+GR G I +I +G RI+ D G
Sbjct: 252 DQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDG 311
Query: 297 DFFSGTSERKVTISGPQRSIRTAESMI 323
T +R I+GP + A +I
Sbjct: 312 T----TPDRIAQITGPPDRCQHAAEII 334
Score = 39 (18.8 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 41 VSNPLAGAVIGKGGSTIND 59
V P +G+ G GG +ND
Sbjct: 7 VPPPSSGSAGGGGGGGVND 25
>UNIPROTKB|Q32PX7 [details] [associations]
symbol:Fubp1 "Far upstream element-binding protein 1"
species:10116 "Rattus norvegicus" [GO:0010628 "positive regulation
of gene expression" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1591892 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0003723 CTD:8880 eggNOG:NOG300923 HOVERGEN:HBG000625
KO:K13210 InterPro:IPR015096 Pfam:PF09005 EMBL:BC107942
IPI:IPI00373591 RefSeq:NP_001032742.1 UniGene:Rn.177078
ProteinModelPortal:Q32PX7 SMR:Q32PX7 STRING:Q32PX7
PhosphoSite:Q32PX7 PRIDE:Q32PX7 GeneID:654496 KEGG:rno:654496
NextBio:714902 Genevestigator:Q32PX7 Uniprot:Q32PX7
Length = 639
Score = 136 (52.9 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 62/193 (32%), Positives = 84/193 (43%)
Query: 47 GAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTT-DRIIMISGTIDEILRAVDLVIDKL 105
G VIG+ G I Q+ +G RIQ GTT DRI I+G D A +++ D L
Sbjct: 283 GIVIGRNGEMIKKIQNDAGVRIQFKPDD----GTTPDRIAQITGPPDRCQHAAEIITD-L 337
Query: 106 LTELHAED--------------QAD-DVGTKTKLR---LIVPNSSCGSIIGKAGATIKSF 147
L + A + Q + ++G L+ IVP G IIGK G TIKS
Sbjct: 338 LRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSI 397
Query: 148 MDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPYT 207
S A I++ R N +L T+ GT + A +LI K+ + VP+
Sbjct: 398 SQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIG-GPVNPLGPPVPHG 456
Query: 208 YAGVFFSGFHGMP 220
GV G HG P
Sbjct: 457 PHGV--PGPHGPP 467
Score = 134 (52.2 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 40/155 (25%), Positives = 76/155 (49%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEIL--- 95
+ V + + G +IG+GG I+ Q +SG +IQ++ P +R M++GT + +
Sbjct: 100 YKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLP---ERSCMLTGTPESVQSAK 156
Query: 96 RAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVI 155
R +D +++K D G + +++P S G +IGK G TIK + +A +
Sbjct: 157 RLLDQIVEKG-RPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQE--RAGV 212
Query: 156 KISRLDHSYYGLN-DRLVTLTGTLDEQMRALELIL 189
K+ + D+ + +TG + +A E++L
Sbjct: 213 KMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVL 247
Score = 126 (49.4 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 37/147 (25%), Positives = 73/147 (49%)
Query: 46 AGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKL 105
AG VIGKGG TI Q ++G ++ + + G D+ + I+G ++ +A ++V++ +
Sbjct: 192 AGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA-DKPLRITGDPYKVQQAKEMVLELI 250
Query: 106 LTELHAEDQADDVGTKTK----LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLD 161
+ + ++ G++ + + +P + G +IG+ G IK +D+ I+ D
Sbjct: 251 RDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD 310
Query: 162 HSYYGLNDRLVTLTGTLDEQMRALELI 188
+ DR+ +TG D A E+I
Sbjct: 311 GT---TPDRIAQITGPPDRCQHAAEII 334
Score = 86 (35.3 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 269 GFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
G ++G+GG I ISQ SGARI++ + + + TI G + I A +I +K+
Sbjct: 384 GLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 442
Score = 66 (28.3 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 24/87 (27%), Positives = 39/87 (44%)
Query: 242 NMGG-RKFQNNKDDR---TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVS-DRG 296
+ GG R+ +N R + + + +G V+GR G I +I +G RI+ D G
Sbjct: 252 DQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDG 311
Query: 297 DFFSGTSERKVTISGPQRSIRTAESMI 323
T +R I+GP + A +I
Sbjct: 312 T----TPDRIAQITGPPDRCQHAAEII 334
Score = 39 (18.8 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 41 VSNPLAGAVIGKGGSTIND 59
V P +G+ G GG +ND
Sbjct: 7 VPPPSSGSAGGGGGGGVND 25
>UNIPROTKB|J9P014 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:AAEX03004886
Ensembl:ENSCAFT00000046408 Uniprot:J9P014
Length = 644
Score = 136 (52.9 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 62/193 (32%), Positives = 84/193 (43%)
Query: 47 GAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTT-DRIIMISGTIDEILRAVDLVIDKL 105
G VIG+ G I Q+ +G RIQ GTT DRI I+G D A +++ D L
Sbjct: 288 GIVIGRNGEMIKKIQNDAGVRIQFKPDD----GTTPDRIAQITGPPDRCQHAAEIITD-L 342
Query: 106 LTELHAED--------------QAD-DVGTKTKLR---LIVPNSSCGSIIGKAGATIKSF 147
L + A + Q + ++G L+ IVP G IIGK G TIKS
Sbjct: 343 LRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSI 402
Query: 148 MDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPYT 207
S A I++ R N +L T+ GT + A +LI K+ + VP+
Sbjct: 403 SQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIG-GPVNPLGPPVPHG 461
Query: 208 YAGVFFSGFHGMP 220
GV G HG P
Sbjct: 462 PHGV--PGPHGPP 472
Score = 134 (52.2 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 40/155 (25%), Positives = 76/155 (49%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEIL--- 95
+ V + + G +IG+GG I+ Q +SG +IQ++ P +R M++GT + +
Sbjct: 105 YKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLP---ERSCMLTGTPESVQSAK 161
Query: 96 RAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVI 155
R +D +++K D G + +++P S G +IGK G TIK + +A +
Sbjct: 162 RLLDQIVEKG-RPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQE--RAGV 217
Query: 156 KISRLDHSYYGLN-DRLVTLTGTLDEQMRALELIL 189
K+ + D+ + +TG + +A E++L
Sbjct: 218 KMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVL 252
Score = 126 (49.4 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 37/147 (25%), Positives = 73/147 (49%)
Query: 46 AGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKL 105
AG VIGKGG TI Q ++G ++ + + G D+ + I+G ++ +A ++V++ +
Sbjct: 197 AGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA-DKPLRITGDPYKVQQAKEMVLELI 255
Query: 106 LTELHAEDQADDVGTKTK----LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLD 161
+ + ++ G++ + + +P + G +IG+ G IK +D+ I+ D
Sbjct: 256 RDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD 315
Query: 162 HSYYGLNDRLVTLTGTLDEQMRALELI 188
+ DR+ +TG D A E+I
Sbjct: 316 GT---TPDRIAQITGPPDRCQHAAEII 339
Score = 86 (35.3 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 269 GFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
G ++G+GG I ISQ SGARI++ + + + TI G + I A +I +K+
Sbjct: 389 GLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 447
Score = 66 (28.3 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 24/87 (27%), Positives = 39/87 (44%)
Query: 242 NMGG-RKFQNNKDDR---TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVS-DRG 296
+ GG R+ +N R + + + +G V+GR G I +I +G RI+ D G
Sbjct: 257 DQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDG 316
Query: 297 DFFSGTSERKVTISGPQRSIRTAESMI 323
T +R I+GP + A +I
Sbjct: 317 T----TPDRIAQITGPPDRCQHAAEII 339
>UNIPROTKB|Q96AE4 [details] [associations]
symbol:FUBP1 "Far upstream element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0010628 "positive
regulation of gene expression" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0003700 GO:GO:0003723
GO:GO:0006366 GO:GO:0003697 GO:GO:0010628 EMBL:U05040 EMBL:AC096948
EMBL:BC017247 IPI:IPI00375441 IPI:IPI00853059 PIR:A53184
RefSeq:NP_003893.2 UniGene:Hs.567380 PDB:1J4W PDB:2KXH PDBsum:1J4W
PDBsum:2KXH ProteinModelPortal:Q96AE4 SMR:Q96AE4 DIP:DIP-47273N
IntAct:Q96AE4 MINT:MINT-1374324 STRING:Q96AE4 PhosphoSite:Q96AE4
DMDM:116241370 REPRODUCTION-2DPAGE:IPI00375441 PaxDb:Q96AE4
PRIDE:Q96AE4 DNASU:8880 Ensembl:ENST00000294623
Ensembl:ENST00000370768 GeneID:8880 KEGG:hsa:8880 UCSC:uc001dii.3
CTD:8880 GeneCards:GC01M078400 HGNC:HGNC:4004 HPA:HPA006149
MIM:603444 neXtProt:NX_Q96AE4 PharmGKB:PA28420 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 OrthoDB:EOG4STS4G
ChiTaRS:FUBP1 EvolutionaryTrace:Q96AE4 GenomeRNAi:8880
NextBio:33343 ArrayExpress:Q96AE4 Bgee:Q96AE4 CleanEx:HS_FUBP1
Genevestigator:Q96AE4 GermOnline:ENSG00000162613 InterPro:IPR015096
Pfam:PF09005 Uniprot:Q96AE4
Length = 644
Score = 134 (52.2 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 40/155 (25%), Positives = 76/155 (49%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEIL--- 95
+ V + + G +IG+GG I+ Q +SG +IQ++ P +R M++GT + +
Sbjct: 105 YKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLP---ERSCMLTGTPESVQSAK 161
Query: 96 RAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVI 155
R +D +++K D G + +++P S G +IGK G TIK + +A +
Sbjct: 162 RLLDQIVEKG-RPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQE--RAGV 217
Query: 156 KISRLDHSYYGLN-DRLVTLTGTLDEQMRALELIL 189
K+ + D+ + +TG + +A E++L
Sbjct: 218 KMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVL 252
Score = 132 (51.5 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 61/193 (31%), Positives = 84/193 (43%)
Query: 47 GAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTT-DRIIMISGTIDEILRAVDLVIDKL 105
G VIG+ G I Q+ +G RIQ GTT +RI I+G D A +++ D L
Sbjct: 288 GIVIGRNGEMIKKIQNDAGVRIQFKPDD----GTTPERIAQITGPPDRCQHAAEIITD-L 342
Query: 106 LTELHAED--------------QAD-DVGTKTKLR---LIVPNSSCGSIIGKAGATIKSF 147
L + A + Q + ++G L+ IVP G IIGK G TIKS
Sbjct: 343 LRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSI 402
Query: 148 MDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPYT 207
S A I++ R N +L T+ GT + A +LI K+ + VP+
Sbjct: 403 SQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIG-GPVNPLGPPVPHG 461
Query: 208 YAGVFFSGFHGMP 220
GV G HG P
Sbjct: 462 PHGV--PGPHGPP 472
Score = 122 (48.0 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 36/147 (24%), Positives = 73/147 (49%)
Query: 46 AGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKL 105
AG VIGKGG TI Q ++G ++ + + G D+ + I+G ++ +A ++V++ +
Sbjct: 197 AGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA-DKPLRITGDPYKVQQAKEMVLELI 255
Query: 106 LTELHAEDQADDVGTKTK----LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLD 161
+ + ++ G++ + + +P + G +IG+ G IK +D+ I+ D
Sbjct: 256 RDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD 315
Query: 162 HSYYGLNDRLVTLTGTLDEQMRALELI 188
+ +R+ +TG D A E+I
Sbjct: 316 GT---TPERIAQITGPPDRCQHAAEII 339
Score = 86 (35.3 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 269 GFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
G ++G+GG I ISQ SGARI++ + + + TI G + I A +I +K+
Sbjct: 389 GLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 447
Score = 69 (29.3 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 25/87 (28%), Positives = 39/87 (44%)
Query: 242 NMGG-RKFQNNKDDR---TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVS-DRG 296
+ GG R+ +N R + + + +G V+GR G I +I +G RI+ D G
Sbjct: 257 DQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDG 316
Query: 297 DFFSGTSERKVTISGPQRSIRTAESMI 323
T ER I+GP + A +I
Sbjct: 317 T----TPERIAQITGPPDRCQHAAEII 339
>UNIPROTKB|F1S9S5 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:CU695021
Ensembl:ENSSSCT00000004173 Uniprot:F1S9S5
Length = 645
Score = 136 (52.9 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 62/193 (32%), Positives = 84/193 (43%)
Query: 47 GAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTT-DRIIMISGTIDEILRAVDLVIDKL 105
G VIG+ G I Q+ +G RIQ GTT DRI I+G D A +++ D L
Sbjct: 288 GIVIGRNGEMIKKIQNDAGVRIQFKPDD----GTTPDRIAQITGPPDRCQHAAEIITD-L 342
Query: 106 LTELHAED--------------QAD-DVGTKTKLR---LIVPNSSCGSIIGKAGATIKSF 147
L + A + Q + ++G L+ IVP G IIGK G TIKS
Sbjct: 343 LRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSI 402
Query: 148 MDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPYT 207
S A I++ R N +L T+ GT + A +LI K+ + VP+
Sbjct: 403 SQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIG-GPVNPLGPPVPHG 461
Query: 208 YAGVFFSGFHGMP 220
GV G HG P
Sbjct: 462 PHGV--PGPHGPP 472
Score = 134 (52.2 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 40/155 (25%), Positives = 76/155 (49%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEIL--- 95
+ V + + G +IG+GG I+ Q +SG +IQ++ P +R M++GT + +
Sbjct: 105 YKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLP---ERSCMLTGTPESVQSAK 161
Query: 96 RAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVI 155
R +D +++K D G + +++P S G +IGK G TIK + +A +
Sbjct: 162 RLLDQIVEKG-RPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQE--RAGV 217
Query: 156 KISRLDHSYYGLN-DRLVTLTGTLDEQMRALELIL 189
K+ + D+ + +TG + +A E++L
Sbjct: 218 KMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVL 252
Score = 126 (49.4 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 37/147 (25%), Positives = 73/147 (49%)
Query: 46 AGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKL 105
AG VIGKGG TI Q ++G ++ + + G D+ + I+G ++ +A ++V++ +
Sbjct: 197 AGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA-DKPLRITGDPYKVQQAKEMVLELI 255
Query: 106 LTELHAEDQADDVGTKTK----LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLD 161
+ + ++ G++ + + +P + G +IG+ G IK +D+ I+ D
Sbjct: 256 RDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD 315
Query: 162 HSYYGLNDRLVTLTGTLDEQMRALELI 188
+ DR+ +TG D A E+I
Sbjct: 316 GT---TPDRIAQITGPPDRCQHAAEII 339
Score = 86 (35.3 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 269 GFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
G ++G+GG I ISQ SGARI++ + + + TI G + I A +I +K+
Sbjct: 389 GLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 447
Score = 66 (28.3 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 24/87 (27%), Positives = 39/87 (44%)
Query: 242 NMGG-RKFQNNKDDR---TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVS-DRG 296
+ GG R+ +N R + + + +G V+GR G I +I +G RI+ D G
Sbjct: 257 DQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDG 316
Query: 297 DFFSGTSERKVTISGPQRSIRTAESMI 323
T +R I+GP + A +I
Sbjct: 317 T----TPDRIAQITGPPDRCQHAAEII 339
>UNIPROTKB|E9PEB5 [details] [associations]
symbol:FUBP1 "Far upstream element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
EMBL:AC096948 HGNC:HGNC:4004 ChiTaRS:FUBP1 InterPro:IPR015096
Pfam:PF09005 IPI:IPI00644386 ProteinModelPortal:E9PEB5 SMR:E9PEB5
PRIDE:E9PEB5 Ensembl:ENST00000370767 ArrayExpress:E9PEB5
Bgee:E9PEB5 Uniprot:E9PEB5
Length = 655
Score = 134 (52.2 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 40/155 (25%), Positives = 76/155 (49%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEIL--- 95
+ V + + G +IG+GG I+ Q +SG +IQ++ P +R M++GT + +
Sbjct: 105 YKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLP---ERSCMLTGTPESVQSAK 161
Query: 96 RAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVI 155
R +D +++K D G + +++P S G +IGK G TIK + +A +
Sbjct: 162 RLLDQIVEKG-RPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQE--RAGV 217
Query: 156 KISRLDHSYYGLN-DRLVTLTGTLDEQMRALELIL 189
K+ + D+ + +TG + +A E++L
Sbjct: 218 KMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVL 252
Score = 132 (51.5 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 61/193 (31%), Positives = 84/193 (43%)
Query: 47 GAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTT-DRIIMISGTIDEILRAVDLVIDKL 105
G VIG+ G I Q+ +G RIQ GTT +RI I+G D A +++ D L
Sbjct: 288 GIVIGRNGEMIKKIQNDAGVRIQFKPDD----GTTPERIAQITGPPDRCQHAAEIITD-L 342
Query: 106 LTELHAED--------------QAD-DVGTKTKLR---LIVPNSSCGSIIGKAGATIKSF 147
L + A + Q + ++G L+ IVP G IIGK G TIKS
Sbjct: 343 LRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSI 402
Query: 148 MDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPYT 207
S A I++ R N +L T+ GT + A +LI K+ + VP+
Sbjct: 403 SQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIG-GPVNPLGPPVPHG 461
Query: 208 YAGVFFSGFHGMP 220
GV G HG P
Sbjct: 462 PHGV--PGPHGPP 472
Score = 122 (48.0 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 36/147 (24%), Positives = 73/147 (49%)
Query: 46 AGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKL 105
AG VIGKGG TI Q ++G ++ + + G D+ + I+G ++ +A ++V++ +
Sbjct: 197 AGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA-DKPLRITGDPYKVQQAKEMVLELI 255
Query: 106 LTELHAEDQADDVGTKTK----LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLD 161
+ + ++ G++ + + +P + G +IG+ G IK +D+ I+ D
Sbjct: 256 RDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD 315
Query: 162 HSYYGLNDRLVTLTGTLDEQMRALELI 188
+ +R+ +TG D A E+I
Sbjct: 316 GT---TPERIAQITGPPDRCQHAAEII 339
Score = 86 (35.3 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 269 GFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
G ++G+GG I ISQ SGARI++ + + + TI G + I A +I +K+
Sbjct: 389 GLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 447
Score = 69 (29.3 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 25/87 (28%), Positives = 39/87 (44%)
Query: 242 NMGG-RKFQNNKDDR---TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVS-DRG 296
+ GG R+ +N R + + + +G V+GR G I +I +G RI+ D G
Sbjct: 257 DQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDG 316
Query: 297 DFFSGTSERKVTISGPQRSIRTAESMI 323
T ER I+GP + A +I
Sbjct: 317 T----TPERIAQITGPPDRCQHAAEII 339
>UNIPROTKB|B4DT31 [details] [associations]
symbol:FUBP1 "cDNA FLJ53425, highly similar to Far upstream
element-binding protein 1" species:9606 "Homo sapiens" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0003723 EMBL:AC096948 UniGene:Hs.567380
HGNC:HGNC:4004 HOGENOM:HOG000231552 HOVERGEN:HBG000625
ChiTaRS:FUBP1 InterPro:IPR015096 Pfam:PF09005 EMBL:AK300032
IPI:IPI00641948 SMR:B4DT31 STRING:B4DT31 Ensembl:ENST00000436586
UCSC:uc010orm.2 OMA:NGQEGDQ Uniprot:B4DT31
Length = 665
Score = 134 (52.2 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 40/155 (25%), Positives = 76/155 (49%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEIL--- 95
+ V + + G +IG+GG I+ Q +SG +IQ++ P +R M++GT + +
Sbjct: 126 YKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLP---ERSCMLTGTPESVQSAK 182
Query: 96 RAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVI 155
R +D +++K D G + +++P S G +IGK G TIK + +A +
Sbjct: 183 RLLDQIVEKG-RPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQE--RAGV 238
Query: 156 KISRLDHSYYGLN-DRLVTLTGTLDEQMRALELIL 189
K+ + D+ + +TG + +A E++L
Sbjct: 239 KMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVL 273
Score = 132 (51.5 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 61/193 (31%), Positives = 84/193 (43%)
Query: 47 GAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTT-DRIIMISGTIDEILRAVDLVIDKL 105
G VIG+ G I Q+ +G RIQ GTT +RI I+G D A +++ D L
Sbjct: 309 GIVIGRNGEMIKKIQNDAGVRIQFKPDD----GTTPERIAQITGPPDRCQHAAEIITD-L 363
Query: 106 LTELHAED--------------QAD-DVGTKTKLR---LIVPNSSCGSIIGKAGATIKSF 147
L + A + Q + ++G L+ IVP G IIGK G TIKS
Sbjct: 364 LRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSI 423
Query: 148 MDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPYT 207
S A I++ R N +L T+ GT + A +LI K+ + VP+
Sbjct: 424 SQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIG-GPVNPLGPPVPHG 482
Query: 208 YAGVFFSGFHGMP 220
GV G HG P
Sbjct: 483 PHGV--PGPHGPP 493
Score = 122 (48.0 bits), Expect = 6.9e-09, Sum P(2) = 6.9e-09
Identities = 36/147 (24%), Positives = 73/147 (49%)
Query: 46 AGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKL 105
AG VIGKGG TI Q ++G ++ + + G D+ + I+G ++ +A ++V++ +
Sbjct: 218 AGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA-DKPLRITGDPYKVQQAKEMVLELI 276
Query: 106 LTELHAEDQADDVGTKTK----LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLD 161
+ + ++ G++ + + +P + G +IG+ G IK +D+ I+ D
Sbjct: 277 RDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD 336
Query: 162 HSYYGLNDRLVTLTGTLDEQMRALELI 188
+ +R+ +TG D A E+I
Sbjct: 337 GT---TPERIAQITGPPDRCQHAAEII 360
Score = 86 (35.3 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 269 GFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
G ++G+GG I ISQ SGARI++ + + + TI G + I A +I +K+
Sbjct: 410 GLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 468
Score = 69 (29.3 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 25/87 (28%), Positives = 39/87 (44%)
Query: 242 NMGG-RKFQNNKDDR---TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVS-DRG 296
+ GG R+ +N R + + + +G V+GR G I +I +G RI+ D G
Sbjct: 278 DQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDG 337
Query: 297 DFFSGTSERKVTISGPQRSIRTAESMI 323
T ER I+GP + A +I
Sbjct: 338 T----TPERIAQITGPPDRCQHAAEII 360
>UNIPROTKB|E2RJQ2 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:AAEX03004886
Ensembl:ENSCAFT00000032426 Uniprot:E2RJQ2
Length = 668
Score = 136 (52.9 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 62/193 (32%), Positives = 84/193 (43%)
Query: 47 GAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTT-DRIIMISGTIDEILRAVDLVIDKL 105
G VIG+ G I Q+ +G RIQ GTT DRI I+G D A +++ D L
Sbjct: 311 GIVIGRNGEMIKKIQNDAGVRIQFKPDD----GTTPDRIAQITGPPDRCQHAAEIITD-L 365
Query: 106 LTELHAED--------------QAD-DVGTKTKLR---LIVPNSSCGSIIGKAGATIKSF 147
L + A + Q + ++G L+ IVP G IIGK G TIKS
Sbjct: 366 LRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSI 425
Query: 148 MDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPYT 207
S A I++ R N +L T+ GT + A +LI K+ + VP+
Sbjct: 426 SQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIG-GPVNPLGPPVPHG 484
Query: 208 YAGVFFSGFHGMP 220
GV G HG P
Sbjct: 485 PHGV--PGPHGPP 495
Score = 134 (52.2 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 40/155 (25%), Positives = 76/155 (49%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEIL--- 95
+ V + + G +IG+GG I+ Q +SG +IQ++ P +R M++GT + +
Sbjct: 128 YKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLP---ERSCMLTGTPESVQSAK 184
Query: 96 RAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVI 155
R +D +++K D G + +++P S G +IGK G TIK + +A +
Sbjct: 185 RLLDQIVEKG-RPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQE--RAGV 240
Query: 156 KISRLDHSYYGLN-DRLVTLTGTLDEQMRALELIL 189
K+ + D+ + +TG + +A E++L
Sbjct: 241 KMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVL 275
Score = 126 (49.4 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 37/147 (25%), Positives = 73/147 (49%)
Query: 46 AGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKL 105
AG VIGKGG TI Q ++G ++ + + G D+ + I+G ++ +A ++V++ +
Sbjct: 220 AGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA-DKPLRITGDPYKVQQAKEMVLELI 278
Query: 106 LTELHAEDQADDVGTKTK----LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLD 161
+ + ++ G++ + + +P + G +IG+ G IK +D+ I+ D
Sbjct: 279 RDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD 338
Query: 162 HSYYGLNDRLVTLTGTLDEQMRALELI 188
+ DR+ +TG D A E+I
Sbjct: 339 GT---TPDRIAQITGPPDRCQHAAEII 362
Score = 86 (35.3 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 269 GFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
G ++G+GG I ISQ SGARI++ + + + TI G + I A +I +K+
Sbjct: 412 GLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 470
Score = 66 (28.3 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 24/87 (27%), Positives = 39/87 (44%)
Query: 242 NMGG-RKFQNNKDDR---TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVS-DRG 296
+ GG R+ +N R + + + +G V+GR G I +I +G RI+ D G
Sbjct: 280 DQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDG 339
Query: 297 DFFSGTSERKVTISGPQRSIRTAESMI 323
T +R I+GP + A +I
Sbjct: 340 T----TPDRIAQITGPPDRCQHAAEII 362
>UNIPROTKB|Q5T6W5 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0030529 EMBL:AL354733 HOGENOM:HOG000019764 HOVERGEN:HBG051916
InterPro:IPR012987 Pfam:PF08067 UniGene:Hs.522257 HGNC:HGNC:5044
ChiTaRS:HNRNPK IPI:IPI00514561 SMR:Q5T6W5 MINT:MINT-1445469
Ensembl:ENST00000435158 Uniprot:Q5T6W5
Length = 428
Score = 114 (45.2 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 44/152 (28%), Positives = 68/152 (44%)
Query: 82 DRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAG 141
+RI+ IS I+ I + +I L H + D +LRL++ S G IIG G
Sbjct: 74 ERILSISADIETIGEILKKIIPTLEEYQHYKGSDFDC----ELRLLIHQSLAGGIIGVKG 129
Query: 142 ATIKSFMDDSQAVIKISR--LDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYS 199
A IK +++Q IK+ + HS DR+V + G D + +++IL +SE +
Sbjct: 130 AKIKELRENTQTTIKLFQECCPHS----TDRVVLIGGKPDRVVECIKIILDLISESPIKG 185
Query: 200 QTMTV-P------YTYAG--VFFSGFHGMPYG 222
+ P Y Y G + F G P G
Sbjct: 186 RAQPYDPNFYDETYDYGGFTMMFDDRRGRPVG 217
Score = 109 (43.4 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 125 RLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRA 184
++ +P GSIIGK G IK +S A IKI D G DR++T+TGT D+ A
Sbjct: 356 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DEPLEGSEDRIITITGTQDQIQNA 412
Query: 185 LELI 188
L+
Sbjct: 413 QYLL 416
Score = 108 (43.1 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 22/72 (30%), Positives = 43/72 (59%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
+R L+ LAG +IG G+ I + + + I+L + E P +TDR+++I G D ++
Sbjct: 112 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQ--ECCPHSTDRVVLIGGKPDRVVE 169
Query: 97 AVDLVIDKLLTE 108
+ +++D L++E
Sbjct: 170 CIKIILD-LISE 180
Score = 100 (40.3 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 24/90 (26%), Positives = 45/90 (50%)
Query: 244 GGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTS 303
GGR + + + + + G ++G+GG+ I +I SGA IK+ + G+
Sbjct: 340 GGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSE 396
Query: 304 ERKVTISGPQRSIRTAESMIMQKVAYASDR 333
+R +TI+G Q I+ A+ ++ V S +
Sbjct: 397 DRIITITGTQDQIQNAQYLLQNSVKQYSGK 426
>UNIPROTKB|C9JTY5 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00978070 ProteinModelPortal:C9JTY5 SMR:C9JTY5
STRING:C9JTY5 Ensembl:ENST00000466412 ArrayExpress:C9JTY5
Bgee:C9JTY5 Uniprot:C9JTY5
Length = 124
Score = 150 (57.9 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 42/122 (34%), Positives = 61/122 (50%)
Query: 26 LSSDPTEKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRI 84
L +P T +R L+ G++IGK G T+ + QS ARI +S +RI
Sbjct: 8 LEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----SCPERI 62
Query: 85 IMISGTIDEILRAVDLVIDKLLTELHAED-QADDVGTK-TKLRLIVPNSSCGSIIGKAGA 142
I+G+ + AV ++ KL +L A +V LRL++P S CGS+IGKAG
Sbjct: 63 TTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGT 122
Query: 143 TI 144
I
Sbjct: 123 KI 124
Score = 103 (41.3 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 26/83 (31%), Positives = 41/83 (49%)
Query: 113 DQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLV 172
++ ++ LR+++ GSIIGK G T+K + S A I IS +R+
Sbjct: 9 EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISE-----GSCPERIT 63
Query: 173 TLTGTLDEQMRALELILLKLSED 195
T+TG+ A+ +I KL ED
Sbjct: 64 TITGSTAAVFHAVSMIAFKLDED 86
>UNIPROTKB|F1S9S9 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:CU695021
Ensembl:ENSSSCT00000004169 Uniprot:F1S9S9
Length = 708
Score = 136 (52.9 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 62/193 (32%), Positives = 84/193 (43%)
Query: 47 GAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTT-DRIIMISGTIDEILRAVDLVIDKL 105
G VIG+ G I Q+ +G RIQ GTT DRI I+G D A +++ D L
Sbjct: 328 GIVIGRNGEMIKKIQNDAGVRIQFKPDD----GTTPDRIAQITGPPDRCQHAAEIITD-L 382
Query: 106 LTELHAED--------------QAD-DVGTKTKLR---LIVPNSSCGSIIGKAGATIKSF 147
L + A + Q + ++G L+ IVP G IIGK G TIKS
Sbjct: 383 LRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSI 442
Query: 148 MDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPYT 207
S A I++ R N +L T+ GT + A +LI K+ + VP+
Sbjct: 443 SQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIG-GPVNPLGPPVPHG 501
Query: 208 YAGVFFSGFHGMP 220
GV G HG P
Sbjct: 502 PHGV--PGPHGPP 512
Score = 134 (52.2 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 40/155 (25%), Positives = 76/155 (49%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEIL--- 95
+ V + + G +IG+GG I+ Q +SG +IQ++ P +R M++GT + +
Sbjct: 145 YKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLP---ERSCMLTGTPESVQSAK 201
Query: 96 RAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVI 155
R +D +++K D G + +++P S G +IGK G TIK + +A +
Sbjct: 202 RLLDQIVEKG-RPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQE--RAGV 257
Query: 156 KISRLDHSYYGLN-DRLVTLTGTLDEQMRALELIL 189
K+ + D+ + +TG + +A E++L
Sbjct: 258 KMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVL 292
Score = 126 (49.4 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 37/147 (25%), Positives = 73/147 (49%)
Query: 46 AGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKL 105
AG VIGKGG TI Q ++G ++ + + G D+ + I+G ++ +A ++V++ +
Sbjct: 237 AGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA-DKPLRITGDPYKVQQAKEMVLELI 295
Query: 106 LTELHAEDQADDVGTKTK----LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLD 161
+ + ++ G++ + + +P + G +IG+ G IK +D+ I+ D
Sbjct: 296 RDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD 355
Query: 162 HSYYGLNDRLVTLTGTLDEQMRALELI 188
+ DR+ +TG D A E+I
Sbjct: 356 GT---TPDRIAQITGPPDRCQHAAEII 379
Score = 86 (35.3 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 269 GFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
G ++G+GG I ISQ SGARI++ + + + TI G + I A +I +K+
Sbjct: 429 GLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 487
Score = 66 (28.3 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 24/87 (27%), Positives = 39/87 (44%)
Query: 242 NMGG-RKFQNNKDDR---TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVS-DRG 296
+ GG R+ +N R + + + +G V+GR G I +I +G RI+ D G
Sbjct: 297 DQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDG 356
Query: 297 DFFSGTSERKVTISGPQRSIRTAESMI 323
T +R I+GP + A +I
Sbjct: 357 T----TPDRIAQITGPPDRCQHAAEII 379
>MGI|MGI:1196294 [details] [associations]
symbol:Fubp1 "far upstream element (FUSE) binding protein 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=ISO] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:1196294 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0003723
eggNOG:NOG300923 HOGENOM:HOG000231552 HOVERGEN:HBG000625
InterPro:IPR015096 Pfam:PF09005 EMBL:BC014763 EMBL:AK029458
IPI:IPI00467635 IPI:IPI00874931 UniGene:Mm.278922 PDB:1X4M PDB:1X4N
PDBsum:1X4M PDBsum:1X4N ProteinModelPortal:Q91WJ8 SMR:Q91WJ8
IntAct:Q91WJ8 STRING:Q91WJ8 PhosphoSite:Q91WJ8
REPRODUCTION-2DPAGE:Q91WJ8 PaxDb:Q91WJ8 PRIDE:Q91WJ8
UCSC:uc008rsv.1 InParanoid:Q91WJ8 EvolutionaryTrace:Q91WJ8
CleanEx:MM_FUBP1 Genevestigator:Q91WJ8
GermOnline:ENSMUSG00000028034 Uniprot:Q91WJ8
Length = 651
Score = 137 (53.3 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 62/193 (32%), Positives = 84/193 (43%)
Query: 47 GAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTT-DRIIMISGTIDEILRAVDLVIDKL 105
G VIG+ G I Q+ +G RIQ GTT DRI I+G D A +++ D L
Sbjct: 284 GIVIGRNGEMIKKIQNDAGVRIQFKPDD----GTTPDRIAQITGPPDRCQHAAEIITD-L 338
Query: 106 LTELHAED--------------QAD-DVGTKTKLR---LIVPNSSCGSIIGKAGATIKSF 147
L + A + Q + ++G L+ IVP G IIGK G TIKS
Sbjct: 339 LRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSI 398
Query: 148 MDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPYT 207
S A I++ R N +L T+ GT + A +LI K+ + VP+
Sbjct: 399 SQQSGARIELQRSPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIG-GPVNPLGPPVPHG 457
Query: 208 YAGVFFSGFHGMP 220
GV G HG P
Sbjct: 458 PHGV--PGPHGPP 468
Score = 134 (52.2 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 40/155 (25%), Positives = 76/155 (49%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEIL--- 95
+ V + + G +IG+GG I+ Q +SG +IQ++ P +R M++GT + +
Sbjct: 101 YKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLP---ERSCMLTGTPESVQSAK 157
Query: 96 RAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVI 155
R +D +++K D G + +++P S G +IGK G TIK + +A +
Sbjct: 158 RLLDQIVEKG-RPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQE--RAGV 213
Query: 156 KISRLDHSYYGLN-DRLVTLTGTLDEQMRALELIL 189
K+ + D+ + +TG + +A E++L
Sbjct: 214 KMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVL 248
Score = 126 (49.4 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 37/147 (25%), Positives = 73/147 (49%)
Query: 46 AGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKL 105
AG VIGKGG TI Q ++G ++ + + G D+ + I+G ++ +A ++V++ +
Sbjct: 193 AGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA-DKPLRITGDPYKVQQAKEMVLELI 251
Query: 106 LTELHAEDQADDVGTKTK----LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLD 161
+ + ++ G++ + + +P + G +IG+ G IK +D+ I+ D
Sbjct: 252 RDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD 311
Query: 162 HSYYGLNDRLVTLTGTLDEQMRALELI 188
+ DR+ +TG D A E+I
Sbjct: 312 GT---TPDRIAQITGPPDRCQHAAEII 335
Score = 85 (35.0 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 269 GFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
G ++G+GG I ISQ SGARI++ + + + TI G + I A +I +K+
Sbjct: 385 GLIIGKGGETIKSISQQSGARIELQRSPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 443
Score = 66 (28.3 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 24/87 (27%), Positives = 39/87 (44%)
Query: 242 NMGG-RKFQNNKDDR---TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVS-DRG 296
+ GG R+ +N R + + + +G V+GR G I +I +G RI+ D G
Sbjct: 253 DQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDG 312
Query: 297 DFFSGTSERKVTISGPQRSIRTAESMI 323
T +R I+GP + A +I
Sbjct: 313 T----TPDRIAQITGPPDRCQHAAEII 335
Score = 41 (19.5 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 41 VSNPLAGAVIGKGGSTIND 59
V P +G+ G GG +ND
Sbjct: 7 VPPPSSGSAGGGGGGVVND 25
>UNIPROTKB|Q5T6W2 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0030529 EMBL:AL354733 HOGENOM:HOG000019764 HOVERGEN:HBG051916
InterPro:IPR012987 Pfam:PF08067 UniGene:Hs.522257 HGNC:HGNC:5044
ChiTaRS:HNRNPK IPI:IPI00910458 SMR:Q5T6W2 Ensembl:ENST00000457156
Uniprot:Q5T6W2
Length = 379
Score = 169 (64.5 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 66/241 (27%), Positives = 107/241 (44%)
Query: 1 METNESSYV-PSPDVHGKRSTAPVKSLSSDP-------TEKPTYIRFLVSNPLAGAVIGK 52
MET + P+ + +G+ P + + + T++ +R L+ + AGAVIGK
Sbjct: 1 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 60
Query: 53 GGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAE 112
GG I ++ A + + S P +RI+ IS I+ I + +I L H +
Sbjct: 61 GGKNIKALRTDYNASVSVPDSSG--P---ERILSISADIETIGEILKKIIPTLEEYQHYK 115
Query: 113 DQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISR--LDHSYYGLNDR 170
D +LRL++ S G IIG GA IK +++Q IK+ + HS DR
Sbjct: 116 GSDFDC----ELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHS----TDR 167
Query: 171 LVTLTGTLDEQMRALELILLKLSEDTLYSQTMTV-P------YTYAG--VFFSGFHGMPY 221
+V + G D + +++IL +SE + + P Y Y G + F G P
Sbjct: 168 VVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPV 227
Query: 222 G 222
G
Sbjct: 228 G 228
>TAIR|locus:2017612 [details] [associations]
symbol:AT1G51580 "AT1G51580" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC025294
EMBL:AC024261 GO:GO:0003723 UniGene:At.37784 eggNOG:NOG285495
UniGene:At.66909 KO:K13162 EMBL:BT008776 EMBL:AK227874
IPI:IPI00539866 PIR:D96554 RefSeq:NP_175569.1
ProteinModelPortal:Q9C553 SMR:Q9C553 IntAct:Q9C553 PaxDb:Q9C553
PRIDE:Q9C553 EnsemblPlants:AT1G51580.1 GeneID:841583
KEGG:ath:AT1G51580 TAIR:At1g51580 HOGENOM:HOG000077702
InParanoid:Q9C553 OMA:PGFDRPP PhylomeDB:Q9C553
ProtClustDB:CLSN2679414 Genevestigator:Q9C553 Uniprot:Q9C553
Length = 621
Score = 137 (53.3 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 55/202 (27%), Positives = 94/202 (46%)
Query: 2 ETNESSYVPSPDVHGKRSTAP--VKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTIND 59
E + Y P D H + P V + E+ R L G++IGKGG+ +
Sbjct: 242 EYHSMEYHPQWD-HPPPNPMPEDVGPFNRPVVEEEVAFRLLCPADKVGSLIGKGGAVVRA 300
Query: 60 FQSQSGARIQLSR-SHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDV 118
Q++SGA I++S +H+ + +RII+IS + + R L D ++ +H ++ ++
Sbjct: 301 LQNESGASIKVSDPTHD----SEERIIVISAR-ENLERRHSLAQDGVM-RVH--NRIVEI 352
Query: 119 GTKTKL----RLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHS--YYGLNDRLV 172
G + RL+V + G ++GK G I + A I++ D + Y +D +V
Sbjct: 353 GFEPSAAVVARLLVHSPYIGRLLGKGGHLISEMRRATGASIRVFAKDQATKYESQHDEIV 412
Query: 173 TLTGTLDEQMRALELILLKLSE 194
+ G L AL IL +L E
Sbjct: 413 QVIGNLKTVQDALFQILCRLRE 434
Score = 79 (32.9 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 258 SLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIR 317
++ I + ++G V G N+ I Q+SGA + V D +GT+E V +SG
Sbjct: 550 NVEIVIPQAYLGHVYGENCSNLNYIKQVSGANVVVHDPK---AGTTEGLVVVSGTSDQAH 606
Query: 318 TAESMI 323
A+S++
Sbjct: 607 FAQSLL 612
Score = 78 (32.5 bits), Expect = 4.7e-07, Sum P(3) = 4.7e-07
Identities = 27/113 (23%), Positives = 49/113 (43%)
Query: 113 DQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDH----SYYGLN 168
D+ D ++ R+IV + ++ K G I+ +DS A+++IS D ++ G
Sbjct: 139 DELDKGESEGLCRMIVRGNQVDYLMSKGGKMIQKIREDSGAIVRISSTDQIPPCAFPG-- 196
Query: 169 DRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPYTYAGVFFSGFHGMPY 221
D ++ + G +AL L+ L E P+ G + +H M Y
Sbjct: 197 DVVIQMNGKFSSVKKALLLVTNCLQESGAPPTWDECPFPQPG-YPPEYHSMEY 248
Score = 75 (31.5 bits), Expect = 4.7e-07, Sum P(3) = 4.7e-07
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 19 STAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQL 70
ST+ + ++ E + R L GA+IGKGGS I QS +G++I++
Sbjct: 4 STSKRPATTATAAES-VHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRV 54
Score = 75 (31.5 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 19/73 (26%), Positives = 38/73 (52%)
Query: 264 ADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMI 323
AD+ +G ++G+GG + + SGA IKVSD + SE ++ + + ++ S+
Sbjct: 284 ADK-VGSLIGKGGAVVRALQNESGASIKVSDP----THDSEERIIVISARENLERRHSLA 338
Query: 324 MQKVAYASDRLMD 336
V +R+++
Sbjct: 339 QDGVMRVHNRIVE 351
Score = 67 (28.6 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 263 VADEHIGFVVGRGGRNIMEISQISGARIKV--SDRGDFFSGTSERKVTISGPQRSIRTAE 320
V +IG ++G+GG I E+ + +GA I+V D+ + + V + G ++++ A
Sbjct: 366 VHSPYIGRLLGKGGHLISEMRRATGASIRVFAKDQATKYESQHDEIVQVIGNLKTVQDAL 425
Query: 321 SMIMQKVAYA 330
I+ ++ A
Sbjct: 426 FQILCRLREA 435
>GENEDB_PFALCIPARUM|PFF0250w [details] [associations]
symbol:PFF0250w "RNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:AL844505
RefSeq:XP_966041.1 ProteinModelPortal:C6KSP9 PRIDE:C6KSP9
EnsemblProtists:PFF0250w:mRNA GeneID:3885713 KEGG:pfa:PFF0250w
EuPathDB:PlasmoDB:PF3D7_0605100 HOGENOM:HOG000281436
ProtClustDB:CLSZ2497375 Uniprot:C6KSP9
Length = 755
Score = 155 (59.6 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 42/163 (25%), Positives = 86/163 (52%)
Query: 34 PTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPG--TTDRIIMISGTI 91
P +RF++ +IGK G I + +S +GA + + + T DRI+ +SG+
Sbjct: 380 PCVVRFVLDVETTAWIIGKAGCHIKEIRSVTGAGAVIVDAPDNIENVKTCDRILTLSGSA 439
Query: 92 DEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDS 151
+ A+ L++ ++ E++ ++ +R++VP + +IG+ G+ IK + S
Sbjct: 440 ENKFNALKLIVRQM------EEREKNINNP--MRMLVPGKAASFLIGRKGSIIKYITEQS 491
Query: 152 QAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSE 194
+ I++++ S N++LV +TG+ + ++ A L+L KL E
Sbjct: 492 GSQIQVAKNKESE---NEKLVLITGSPEAKILASVLVLQKLEE 531
Score = 139 (54.0 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 49/190 (25%), Positives = 91/190 (47%)
Query: 24 KSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEF--FPGTT 81
KS + TE L+ N G VIGK G+ + + + GA I+ + + +P +
Sbjct: 48 KSNCATSTEMRIPYCLLLPNRAIGYVIGKSGNNVREIEKACGAVIKCQKEFDVSVYPPPS 107
Query: 82 DRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAG 141
++I+ I G + +A++LV+ K + + + Q +D G K + +IVP S IIG+ G
Sbjct: 108 EKILTIFGKKENKKKALELVLGKSKSVM--DFQEED-G-KESIVIIVPTRSIPIIIGQKG 163
Query: 142 ATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQT 201
+ I S + S I + + D G+ D+ + + ++ I+ L ED + +
Sbjct: 164 SKISSLSERSSCEINVHKDDVP--GIKDKAIFIKSKKISKIIDCIGIIYDLLEDVVENGI 221
Query: 202 MTVPYTYAGV 211
+T+ + GV
Sbjct: 222 LTIS-EFPGV 230
Score = 107 (42.7 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 28/86 (32%), Positives = 49/86 (56%)
Query: 112 EDQADDVGTKTKLR----LIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISR-LDHSYYG 166
ED + T T++R L++PN + G +IGK+G ++ AVIK + D S Y
Sbjct: 45 EDGKSNCATSTEMRIPYCLLLPNRAIGYVIGKSGNNVREIEKACGAVIKCQKEFDVSVYP 104
Query: 167 L-NDRLVTLTGTLDEQMRALELILLK 191
+++++T+ G + + +ALEL+L K
Sbjct: 105 PPSEKILTIFGKKENKKKALELVLGK 130
Score = 75 (31.5 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 22/83 (26%), Positives = 46/83 (55%)
Query: 246 RKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSER 305
R+ + + + N + + V + F++GR G I I++ SG++I+V+ + +E+
Sbjct: 451 RQMEEREKNINNPMRMLVPGKAASFLIGRKGSIIKYITEQSGSQIQVAKNKE---SENEK 507
Query: 306 KVTISG-PQRSIRTAESMIMQKV 327
V I+G P+ I A +++QK+
Sbjct: 508 LVLITGSPEAKI-LASVLVLQKL 529
Score = 67 (28.6 bits), Expect = 6.6e-09, Sum P(3) = 6.6e-09
Identities = 17/64 (26%), Positives = 34/64 (53%)
Query: 266 EHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSG--TSERKVTISGPQRSIRTAESMI 323
E +++G+ G +I EI ++GA + D D T +R +T+SG + A +I
Sbjct: 390 ETTAWIIGKAGCHIKEIRSVTGAGAVIVDAPDNIENVKTCDRILTLSGSAENKFNALKLI 449
Query: 324 MQKV 327
++++
Sbjct: 450 VRQM 453
Score = 40 (19.1 bits), Expect = 6.6e-09, Sum P(3) = 6.6e-09
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 241 PNMGGRKFQNNKDDRTNSLTIGVADEHIGF 270
P + NN DD ++ I DEH F
Sbjct: 228 PGVPKNDINNNNDDIIDNDHINDNDEHNNF 257
>UNIPROTKB|C6KSP9 [details] [associations]
symbol:PFF0250w "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:AL844505
RefSeq:XP_966041.1 ProteinModelPortal:C6KSP9 PRIDE:C6KSP9
EnsemblProtists:PFF0250w:mRNA GeneID:3885713 KEGG:pfa:PFF0250w
EuPathDB:PlasmoDB:PF3D7_0605100 HOGENOM:HOG000281436
ProtClustDB:CLSZ2497375 Uniprot:C6KSP9
Length = 755
Score = 155 (59.6 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 42/163 (25%), Positives = 86/163 (52%)
Query: 34 PTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPG--TTDRIIMISGTI 91
P +RF++ +IGK G I + +S +GA + + + T DRI+ +SG+
Sbjct: 380 PCVVRFVLDVETTAWIIGKAGCHIKEIRSVTGAGAVIVDAPDNIENVKTCDRILTLSGSA 439
Query: 92 DEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDS 151
+ A+ L++ ++ E++ ++ +R++VP + +IG+ G+ IK + S
Sbjct: 440 ENKFNALKLIVRQM------EEREKNINNP--MRMLVPGKAASFLIGRKGSIIKYITEQS 491
Query: 152 QAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSE 194
+ I++++ S N++LV +TG+ + ++ A L+L KL E
Sbjct: 492 GSQIQVAKNKESE---NEKLVLITGSPEAKILASVLVLQKLEE 531
Score = 139 (54.0 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 49/190 (25%), Positives = 91/190 (47%)
Query: 24 KSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEF--FPGTT 81
KS + TE L+ N G VIGK G+ + + + GA I+ + + +P +
Sbjct: 48 KSNCATSTEMRIPYCLLLPNRAIGYVIGKSGNNVREIEKACGAVIKCQKEFDVSVYPPPS 107
Query: 82 DRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAG 141
++I+ I G + +A++LV+ K + + + Q +D G K + +IVP S IIG+ G
Sbjct: 108 EKILTIFGKKENKKKALELVLGKSKSVM--DFQEED-G-KESIVIIVPTRSIPIIIGQKG 163
Query: 142 ATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQT 201
+ I S + S I + + D G+ D+ + + ++ I+ L ED + +
Sbjct: 164 SKISSLSERSSCEINVHKDDVP--GIKDKAIFIKSKKISKIIDCIGIIYDLLEDVVENGI 221
Query: 202 MTVPYTYAGV 211
+T+ + GV
Sbjct: 222 LTIS-EFPGV 230
Score = 107 (42.7 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 28/86 (32%), Positives = 49/86 (56%)
Query: 112 EDQADDVGTKTKLR----LIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISR-LDHSYYG 166
ED + T T++R L++PN + G +IGK+G ++ AVIK + D S Y
Sbjct: 45 EDGKSNCATSTEMRIPYCLLLPNRAIGYVIGKSGNNVREIEKACGAVIKCQKEFDVSVYP 104
Query: 167 L-NDRLVTLTGTLDEQMRALELILLK 191
+++++T+ G + + +ALEL+L K
Sbjct: 105 PPSEKILTIFGKKENKKKALELVLGK 130
Score = 75 (31.5 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 22/83 (26%), Positives = 46/83 (55%)
Query: 246 RKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSER 305
R+ + + + N + + V + F++GR G I I++ SG++I+V+ + +E+
Sbjct: 451 RQMEEREKNINNPMRMLVPGKAASFLIGRKGSIIKYITEQSGSQIQVAKNKE---SENEK 507
Query: 306 KVTISG-PQRSIRTAESMIMQKV 327
V I+G P+ I A +++QK+
Sbjct: 508 LVLITGSPEAKI-LASVLVLQKL 529
Score = 67 (28.6 bits), Expect = 6.6e-09, Sum P(3) = 6.6e-09
Identities = 17/64 (26%), Positives = 34/64 (53%)
Query: 266 EHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSG--TSERKVTISGPQRSIRTAESMI 323
E +++G+ G +I EI ++GA + D D T +R +T+SG + A +I
Sbjct: 390 ETTAWIIGKAGCHIKEIRSVTGAGAVIVDAPDNIENVKTCDRILTLSGSAENKFNALKLI 449
Query: 324 MQKV 327
++++
Sbjct: 450 VRQM 453
Score = 40 (19.1 bits), Expect = 6.6e-09, Sum P(3) = 6.6e-09
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 241 PNMGGRKFQNNKDDRTNSLTIGVADEHIGF 270
P + NN DD ++ I DEH F
Sbjct: 228 PGVPKNDINNNNDDIIDNDHINDNDEHNNF 257
>ZFIN|ZDB-GENE-041121-12 [details] [associations]
symbol:zgc:101598 "zgc:101598" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-041121-12 GO:GO:0003723
eggNOG:NOG300923 HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 OrthoDB:EOG4X97H1 EMBL:BC085379
IPI:IPI00487369 RefSeq:NP_001007777.1 UniGene:Dr.76973
ProteinModelPortal:Q5RKQ3 SMR:Q5RKQ3 STRING:Q5RKQ3 GeneID:493616
KEGG:dre:493616 InParanoid:Q5RKQ3 NextBio:20865427
ArrayExpress:Q5RKQ3 Uniprot:Q5RKQ3
Length = 572
Score = 133 (51.9 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 40/154 (25%), Positives = 75/154 (48%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGT---IDEIL 95
F V + + G +IG+GG I Q +S +IQ++ G DR ++GT I++
Sbjct: 88 FKVPDKMVGFIIGRGGEQITRIQLESNCKIQIAADSG---GMMDRPCTLTGTPESIEQAK 144
Query: 96 RAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVI 155
R + ++D+ Q D G+ +++P S G +IGK G TIK + + +
Sbjct: 145 RLLGQIVDRCRNGPGFHSQMD--GSSAVQEILIPASKVGLVIGKGGDTIKQLQERTGVKM 202
Query: 156 KISRLDHSYYGLNDRLVTLTGTLDEQMRALELIL 189
+ + D G +D+ + ++G + +A EL++
Sbjct: 203 IMIQDDPMPTG-SDKPLRISGDPYKVQQARELVV 235
Score = 131 (51.2 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 44/158 (27%), Positives = 80/158 (50%)
Query: 40 LVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVD 99
L+ G VIGKGG TI Q ++G ++ + + P +D+ + ISG ++ +A +
Sbjct: 174 LIPASKVGLVIGKGGDTIKQLQERTGVKMIMIQDDPM-PTGSDKPLRISGDPYKVQQARE 232
Query: 100 LVIDKLLTELHAEDQAD------DVGTK--TKLRLIVPNSSCGSIIGKAGATIKSFMDDS 151
LV++ ++ E +DQ D D G++ + + + VP + G +IG+ G IK +D+
Sbjct: 233 LVVE-IIRE---KDQGDFRSGRSDFGSRLGSSIDVAVPRFAVGIVIGRNGEMIKKIQNDA 288
Query: 152 QAVIKISRLDHSYYGLN-DRLVTLTGTLDEQMRALELI 188
I+ D G++ DR+ + G + A+ LI
Sbjct: 289 GVRIQFKPDD----GISPDRVAQVMGQPERCQHAVHLI 322
Score = 78 (32.5 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 259 LTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRT 318
+T + + G V+G+GG I I+Q SGA +++ + + R +I G + +
Sbjct: 362 VTYTIPADKCGLVIGKGGETIKNINQQSGAHVELQRNPPPNTDPNVRTFSIRGSPQQMEM 421
Query: 319 AESMIMQKV 327
A +I K+
Sbjct: 422 ARQLIDDKI 430
Score = 65 (27.9 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 21/77 (27%), Positives = 35/77 (45%)
Query: 257 NSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSI 316
+S+ + V +G V+GR G I +I +G RI+ D S +R + G
Sbjct: 259 SSIDVAVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKP-DDGIS--PDRVAQVMGQPERC 315
Query: 317 RTAESMIMQKVAYASDR 333
+ A +I + V A +R
Sbjct: 316 QHAVHLINELVQTAQER 332
Score = 41 (19.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 290 IKVSDRGDFFSGTSE 304
I+ D+GDF SG S+
Sbjct: 238 IREKDQGDFRSGRSD 252
>UNIPROTKB|B3KM64 [details] [associations]
symbol:PCBP4 "cDNA FLJ10382 fis, clone NT2RM2002088, highly
similar to Poly(rC)-binding protein 4" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HOVERGEN:HBG053520 UniGene:Hs.20930 HGNC:HGNC:8652 EMBL:AK001244
IPI:IPI00788617 SMR:B3KM64 STRING:B3KM64 Ensembl:ENST00000395013
UCSC:uc003dci.2 Uniprot:B3KM64
Length = 243
Score = 116 (45.9 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 29/69 (42%), Positives = 42/69 (60%)
Query: 255 RTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQR 314
+T+S V ++ IG V+GR G I EI Q+SGA IK+ ++ + G ER VTI+G
Sbjct: 80 QTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAE---GAGERHVTITGSPV 136
Query: 315 SIRTAESMI 323
SI A+ +I
Sbjct: 137 SIALAQYLI 145
Score = 83 (34.3 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMD 149
LRL++P S CGS+IGKAG IK +
Sbjct: 27 LRLVIPASQCGSLIGKAGTKIKEIRE 52
Score = 52 (23.4 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 34 PTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRII 85
P +R ++ G++IGK G+ I + + + + QLS SH P T ++
Sbjct: 24 PVTLRLVIPASQCGSLIGKAGTKIKEIREVTKLQ-QLS-SHAV-PFATPSVV 72
>TAIR|locus:2012713 [details] [associations]
symbol:AT1G33680 "AT1G33680" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084 SMART:SM00322
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0003723
eggNOG:NOG300923 KO:K13210 UniGene:At.39892 UniGene:At.71035
HOGENOM:HOG000242545 EMBL:AK229850 EMBL:AK229909 EMBL:AK230055
IPI:IPI00786006 RefSeq:NP_174629.3 ProteinModelPortal:Q0WLY0
SMR:Q0WLY0 STRING:Q0WLY0 PaxDb:Q0WLY0 PRIDE:Q0WLY0
EnsemblPlants:AT1G33680.1 GeneID:840259 KEGG:ath:AT1G33680
TAIR:At1g33680 InParanoid:Q0WLY0 OMA:PSYGSTP PhylomeDB:Q0WLY0
ProtClustDB:CLSN2690290 Genevestigator:Q0WLY0 Uniprot:Q0WLY0
Length = 763
Score = 166 (63.5 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 56/185 (30%), Positives = 89/185 (48%)
Query: 29 DPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMIS 88
D T+ T R V + G +IGKGG + Q SGA+IQ+ R E P + R + I
Sbjct: 227 DDTQSTTR-RIDVPSSKVGTLIGKGGEMVRYLQVNSGAKIQIRRDAEADPSSALRPVEII 285
Query: 89 GTIDEILRAVDLVIDKLLTELHAEDQADDV------GTKTKLRLIVPNSSCGSIIGKAGA 142
GT+ I +A +KL+ + AE +A V G ++ + VP+ G IIG+ G
Sbjct: 286 GTVSCIEKA-----EKLINAVIAEVEAGGVPALAARGVPEQMEIKVPSDKVGVIIGRGGE 340
Query: 143 TIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTM 202
TIK+ S+A I++ + +R V ++G D++ + L+K D +Y
Sbjct: 341 TIKNMQTKSRARIQLIPQNEGDAS-KERTVRISG--DKRQIDIATALIK---DVMYQDGR 394
Query: 203 TVPYT 207
PY+
Sbjct: 395 PSPYS 399
>UNIPROTKB|F1MX51 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:DAAA02008247
EMBL:DAAA02008246 IPI:IPI00698543 Ensembl:ENSBTAT00000011751
Uniprot:F1MX51
Length = 602
Score = 136 (52.9 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 62/193 (32%), Positives = 84/193 (43%)
Query: 47 GAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTT-DRIIMISGTIDEILRAVDLVIDKL 105
G VIG+ G I Q+ +G RIQ GTT DRI I+G D A +++ D L
Sbjct: 245 GIVIGRNGEMIKKIQNDAGVRIQFKPDD----GTTPDRIAQITGPPDRCQHAAEIITD-L 299
Query: 106 LTELHAED--------------QAD-DVGTKTKLR---LIVPNSSCGSIIGKAGATIKSF 147
L + A + Q + ++G L+ IVP G IIGK G TIKS
Sbjct: 300 LRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSI 359
Query: 148 MDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPYT 207
S A I++ R N +L T+ GT + A +LI K+ + VP+
Sbjct: 360 SQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIG-GPVNPLGPPVPHG 418
Query: 208 YAGVFFSGFHGMP 220
GV G HG P
Sbjct: 419 PHGV--PGPHGPP 429
Score = 123 (48.4 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 39/152 (25%), Positives = 74/152 (48%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAV 98
+ V + + G +IG+GG I+ Q +SG +IQ++ P +R M++GT + + A
Sbjct: 65 YKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLP---ERSCMLTGTPESVQSAK 121
Query: 99 DLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKIS 158
L +D + A G K +++P S G ++GK G TI + + +A +K+
Sbjct: 122 RL-LDIVEKGRPAPGFHHGDGPKCSSEIMIPASKAG-LVGKGGETINN--SEERAGVKMV 177
Query: 159 RLDHSYYGLN-DRLVTLTGTLDEQMRALELIL 189
+ D+ + +TG + +A E++L
Sbjct: 178 MIQDGPQNTGADKPLRITGDPYKVQQAKEMVL 209
Score = 116 (45.9 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 35/147 (23%), Positives = 75/147 (51%)
Query: 46 AGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKL 105
AG ++GKGG TIN+ + ++G ++ + + G D+ + I+G ++ +A ++V++ +
Sbjct: 155 AG-LVGKGGETINNSEERAGVKMVMIQDGPQNTGA-DKPLRITGDPYKVQQAKEMVLELI 212
Query: 106 LTELHAEDQADDVGTKTK----LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLD 161
+ + ++ G++ + + +P + G +IG+ G IK +D+ I+ D
Sbjct: 213 RDQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD 272
Query: 162 HSYYGLNDRLVTLTGTLDEQMRALELI 188
+ DR+ +TG D A E+I
Sbjct: 273 GT---TPDRIAQITGPPDRCQHAAEII 296
Score = 86 (35.3 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 269 GFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
G ++G+GG I ISQ SGARI++ + + + TI G + I A +I +K+
Sbjct: 346 GLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 404
Score = 66 (28.3 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 24/87 (27%), Positives = 39/87 (44%)
Query: 242 NMGG-RKFQNNKDDR---TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVS-DRG 296
+ GG R+ +N R + + + +G V+GR G I +I +G RI+ D G
Sbjct: 214 DQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDG 273
Query: 297 DFFSGTSERKVTISGPQRSIRTAESMI 323
T +R I+GP + A +I
Sbjct: 274 T----TPDRIAQITGPPDRCQHAAEII 296
>UNIPROTKB|Q8UVD9 [details] [associations]
symbol:KHSRP "Far upstream element-binding protein 2"
species:9031 "Gallus gallus" [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0005737 GO:GO:0003730
GO:GO:0008298 GO:GO:0051028 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 EMBL:AF461020 IPI:IPI00589044
RefSeq:NP_989608.1 UniGene:Gga.94 ProteinModelPortal:Q8UVD9
SMR:Q8UVD9 PRIDE:Q8UVD9 GeneID:374140 KEGG:gga:374140 CTD:8570
NextBio:20813655 Uniprot:Q8UVD9
Length = 769
Score = 131 (51.2 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 42/173 (24%), Positives = 82/173 (47%)
Query: 30 PTEKPTYI--RFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMI 87
P + T + + V + + G +IG+GG IN Q SG ++Q+S P +R + +
Sbjct: 202 PPPRSTTVTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLP---ERSVSL 258
Query: 88 SGTIDEILRAVDLVIDKLLTELHA--EDQADDVGTK---TKLRLIVPNSSCGSIIGKAGA 142
+G+ + + +A L++D +++ Q D T +++P G +IGK G
Sbjct: 259 TGSPEAVQKA-KLMLDDIVSRGRGGPPGQFHDYANGQNGTVQEIMIPAGKAGLVIGKGGE 317
Query: 143 TIKSFMDDSQAVIKISRLDHSYYGLN-DRLVTLTGTLDEQMRALELILLKLSE 194
TIK + +A +K+ + N D+ + + G + +A E+++ L E
Sbjct: 318 TIKQLQE--RAGVKMIFIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 368
Score = 108 (43.1 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 34/120 (28%), Positives = 60/120 (50%)
Query: 46 AGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKL 105
AG VIGKGG TI Q ++G ++ + D+ + I G ++ +A ++V+D +
Sbjct: 308 AGLVIGKGGETIKQLQERAGVKMIFIQDGSQNTNV-DKPLRIIGDPYKVQQACEMVMD-I 365
Query: 106 LTELHAEDQAD--DVGTKTK--LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLD 161
L E D + G++ + + VP S G +IG++G IK +D+ I+ + D
Sbjct: 366 LRERDQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD 425
Score = 79 (32.9 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 19/69 (27%), Positives = 34/69 (49%)
Query: 259 LTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRT 318
+T + G V+GRGG N+ I+Q GA +++S + + + I G + I
Sbjct: 489 MTFSIPTHKCGLVIGRGGENVKAINQQRGAFVEISRQLPPNGDPNFKLFIIRGSPQQIEH 548
Query: 319 AESMIMQKV 327
A+ I +K+
Sbjct: 549 AKQPIEEKI 557
Score = 68 (29.0 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 24/84 (28%), Positives = 35/84 (41%)
Query: 242 NMGGRKFQNNKDDRTNS-LTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFS 300
+ GG +N R + + V +G V+GR G I +I +G RI+ D
Sbjct: 370 DQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQ--D--D 425
Query: 301 GTSERKVT-ISGPQRSIRTAESMI 323
GT K+ I GP A +I
Sbjct: 426 GTGPEKIAHIMGPPERCEHAARII 449
>UNIPROTKB|F1NV59 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:AADN02012752 IPI:IPI00579990
Ensembl:ENSGALT00000014526 ArrayExpress:F1NV59 Uniprot:F1NV59
Length = 632
Score = 137 (53.3 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 44/177 (24%), Positives = 85/177 (48%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEIL--- 95
+ V + + G +IG+GG I+ Q +SG +IQ++ P +R M++GT + +
Sbjct: 102 YKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLP---ERSCMLTGTPESVQSAK 158
Query: 96 RAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVI 155
R +D +++K D G + +++P S G +IGK G TIK + +A +
Sbjct: 159 RLLDQIVEKG-RPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIKQLQE--RAGV 214
Query: 156 KISRLDHSYYGLN-DRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPYTYAGV 211
K+ + D+ + +TG + +A E++L +L D + + +P G+
Sbjct: 215 KMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVL-ELIRDQGGFREVPIPRFAVGI 270
Score = 115 (45.5 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 39/143 (27%), Positives = 69/143 (48%)
Query: 46 AGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKL 105
AG VIGKGG TI Q ++G ++ + + G D+ + I+G ++ +A ++V++ +
Sbjct: 194 AGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGA-DKPLRITGDPYKVQQAKEMVLELI 252
Query: 106 LTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYY 165
DQ G + + +P + G +IG+ G IK +D+ I+ D +
Sbjct: 253 ------RDQG---GFR---EVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGT-- 298
Query: 166 GLNDRLVTLTGTLDEQMRALELI 188
DR+ +TG D A E+I
Sbjct: 299 -TPDRIAQITGPPDRCQHAAEII 320
Score = 88 (36.0 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 47 GAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTT-DRIIMISGTIDEILRAVDLVIDKL 105
G VIG+ G I Q+ +G RIQ GTT DRI I+G D A +++ D L
Sbjct: 269 GIVIGRNGEMIKKIQNDAGVRIQFKPDD----GTTPDRIAQITGPPDRCQHAAEIITD-L 323
Query: 106 LTELHA 111
L + A
Sbjct: 324 LRSVQA 329
Score = 77 (32.2 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 34/107 (31%), Positives = 45/107 (42%)
Query: 119 GTKTKLRLIVPNSSCGSIIGKA-----GATIKSFMDDSQAVIKISRLDHSYYGLNDRLVT 173
G + IVP G IIGK G TIKS S A I++ R N ++ T
Sbjct: 356 GGLQEFNFIVPTGKTGLIIGKGNVSLRGETIKSISQQSGARIELQRNPPPNADPNMKMFT 415
Query: 174 LTGTLDEQMRALELILLKLSEDTLYSQTMTVPYTYAGVFFSGFHGMP 220
+ GT + A +LI K+ + VP+ GV G HG P
Sbjct: 416 IRGTPQQIDYARQLIEEKIG-GPVNPLGPPVPHGPHGVV-PGPHGPP 460
Score = 70 (29.7 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 269 GFVVGRG-----GRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMI 323
G ++G+G G I ISQ SGARI++ + + + TI G + I A +I
Sbjct: 371 GLIIGKGNVSLRGETIKSISQQSGARIELQRNPPPNADPNMKMFTIRGTPQQIDYARQLI 430
Query: 324 MQKV 327
+K+
Sbjct: 431 EEKI 434
Score = 64 (27.6 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 268 IGFVVGRGGRNIMEISQISGARIKVS-DRGDFFSGTSERKVTISGPQRSIRTAESMI 323
+G V+GR G I +I +G RI+ D G T +R I+GP + A +I
Sbjct: 268 VGIVIGRNGEMIKKIQNDAGVRIQFKPDDGT----TPDRIAQITGPPDRCQHAAEII 320
>WB|WBGene00022738 [details] [associations]
symbol:ZK418.9 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 eggNOG:NOG300923 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 EMBL:FO080150
HOGENOM:HOG000018892 PIR:T27855 RefSeq:NP_001023000.1
ProteinModelPortal:Q23487 SMR:Q23487 STRING:Q23487 PaxDb:Q23487
PRIDE:Q23487 EnsemblMetazoa:ZK418.9a GeneID:175989
KEGG:cel:CELE_ZK418.9 UCSC:ZK418.9b.2 CTD:175989 WormBase:ZK418.9a
InParanoid:Q23487 OMA:NCTIEGP NextBio:890626 ArrayExpress:Q23487
Uniprot:Q23487
Length = 557
Score = 142 (55.0 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 45/172 (26%), Positives = 78/172 (45%)
Query: 46 AGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLV---I 102
AG +IGKGG I +++G +IQ P + DRI +I GT D+I RA + + +
Sbjct: 251 AGMIIGKGGEMIKRLAAETGTKIQFKPDTN--PNSEDRIAVIMGTRDQIYRATERITEIV 308
Query: 103 DKLLTELHAEDQADDVGT----KTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKIS 158
++ + A GT ++ + VP CG +IGK G IK ++ A ++
Sbjct: 309 NRAIKNNGAPQDRGSAGTVLPGQSIFYMHVPAGKCGLVIGKGGENIKQIERETGATCGLA 368
Query: 159 RLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPYTYAG 210
++++ + G+ + A L+ +K+ E + T P AG
Sbjct: 369 PAAEQK-NEDEKVFEIKGSQLQIHHASHLVRIKVGE--ISPNTPVPPLQGAG 417
Score = 131 (51.2 bits), Expect = 9.0e-09, Sum P(2) = 9.0e-09
Identities = 39/139 (28%), Positives = 63/139 (45%)
Query: 13 DVHGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSR 72
D+ + ++ V L+ ++K T I + V + G VIGKGGS I Q SG R+Q+
Sbjct: 33 DLIPTKKSSEVGDLNMGDSDKITDI-YPVPEKVVGLVIGKGGSEIRLIQQTSGCRVQMDP 91
Query: 73 SHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSS 132
H+ G R I G D++ A ++ + G T+ +++P
Sbjct: 92 DHQSVNGF--RNCTIEGPPDQVAVARQMITQVINRNQTGAQPGAAPGEVTE-EMLIPADK 148
Query: 133 CGSIIGKAGATIKSFMDDS 151
G +IGK G TI+ + S
Sbjct: 149 IGLVIGKGGETIRIVQEQS 167
Score = 81 (33.6 bits), Expect = 6.1e-06, Sum P(3) = 6.1e-06
Identities = 24/68 (35%), Positives = 32/68 (47%)
Query: 121 KTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDE 180
+ K +IVP S G IIGK G IK ++ KI + DR+ + GT D+
Sbjct: 239 QAKGEVIVPRLSAGMIIGKGGEMIKRLAAETGT--KIQFKPDTNPNSEDRIAVIMGTRDQ 296
Query: 181 QMRALELI 188
RA E I
Sbjct: 297 IYRATERI 304
Score = 73 (30.8 bits), Expect = 9.0e-09, Sum P(2) = 9.0e-09
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 269 GFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVA 328
G V+G+GG NI +I + +GA ++ + E+ I G Q I A ++ KV
Sbjct: 344 GLVIGKGGENIKQIERETGATCGLAPAAEQ-KNEDEKVFEIKGSQLQIHHASHLVRIKVG 402
Query: 329 YAS 331
S
Sbjct: 403 EIS 405
Score = 65 (27.9 bits), Expect = 6.1e-06, Sum P(3) = 6.1e-06
Identities = 14/21 (66%), Positives = 14/21 (66%)
Query: 47 GAVIGKGGSTINDFQSQSGAR 67
G VIGKGG TI Q QSG R
Sbjct: 150 GLVIGKGGETIRIVQEQSGLR 170
Score = 55 (24.4 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 269 GFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
G ++G+GG I ++ +G +I+ + D + +R I G + I A I + V
Sbjct: 252 GMIIGKGGEMIKRLAAETGTKIQF--KPDTNPNSEDRIAVIMGTRDQIYRATERITEIV 308
>UNIPROTKB|F1LXN9 [details] [associations]
symbol:F1LXN9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 IPI:IPI00777906
Ensembl:ENSRNOT00000017403 Uniprot:F1LXN9
Length = 376
Score = 100 (40.3 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 243 MGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGT 302
+GGR ++ D + I + + G ++G GG+ I +I SGA IK D G+
Sbjct: 285 VGGRGSYSDLDRHIITTQITIPKDLTGSIIGEGGQRIKQICHESGASIKT----DELEGS 340
Query: 303 SERKVTISGPQRSIRTAESMIMQKV 327
+R + I+G Q I+ A+ ++ V
Sbjct: 341 EDRIIIITGTQDQIQNAQYLLQNSV 365
Score = 99 (39.9 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 48/179 (26%), Positives = 78/179 (43%)
Query: 31 TEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISG- 89
T++ R L+ + AGAVIGK I ++ A I + S P + I+ I
Sbjct: 13 TDEMVESRILLQSENAGAVIGKN---IKALRTDYSASISVPDSSG--P---EHILSIGAD 64
Query: 90 --TIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSF 147
TI EILR + +++ H D +L L++ S G IIG GA +K
Sbjct: 65 IKTIGEILRKIVPTLEECQ---HYRGSDFDC----ELGLLIQQSLAGGIIGVKGAKVKEL 117
Query: 148 MDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPY 206
+++Q +K R DR+V + G D + +++I +SE + + PY
Sbjct: 118 RENTQTTVK--RFQEWCPHSTDRVVLIGGKPDRVVECIKIIPDLVSESPIKGRAQ--PY 172
>TAIR|locus:2120755 [details] [associations]
symbol:PEP "AT4G26000" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0048367 "shoot system development" evidence=IMP]
[GO:0048467 "gynoecium development" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161564
EMBL:AL049483 GO:GO:0003723 GO:GO:0048367 GO:GO:0048467 HSSP:Q96AE4
KO:K13162 EMBL:AY056288 EMBL:AY099659 EMBL:AY114064 IPI:IPI00547245
PIR:T04255 RefSeq:NP_194330.1 UniGene:At.23137 UniGene:At.66652
ProteinModelPortal:Q9SZH4 SMR:Q9SZH4 IntAct:Q9SZH4 STRING:Q9SZH4
PaxDb:Q9SZH4 PRIDE:Q9SZH4 EnsemblPlants:AT4G26000.1 GeneID:828706
KEGG:ath:AT4G26000 TAIR:At4g26000 eggNOG:NOG314569
HOGENOM:HOG000243588 InParanoid:Q9SZH4 OMA:MCEETRA PhylomeDB:Q9SZH4
ProtClustDB:CLSN2685896 Genevestigator:Q9SZH4 Uniprot:Q9SZH4
Length = 495
Score = 141 (54.7 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 48/162 (29%), Positives = 88/162 (54%)
Query: 38 RFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDE---I 94
R +V GA+IG+ G I ++ ARI++ T DRI++ISG + +
Sbjct: 77 RMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPV---NTPDRIVLISGKEEPEAYM 133
Query: 95 LRAVDLVID--KLLTEL--HAEDQADDVGTK-TKLRLIVPNSSCGSIIGKAGATIKSFMD 149
A+D V+ + ++ L + +D + G+ + +RL+V ++ ++IGK G+ IKS ++
Sbjct: 134 SPAMDAVLRVFRRVSGLPDNDDDDVQNAGSVFSSVRLLVASTQAINLIGKQGSLIKSIVE 193
Query: 150 DSQAVIKI-SRLDHSYYGLND-RLVTLTGTLDEQMRALELIL 189
+S A ++I S + +Y D R+V L G + ++ALE I+
Sbjct: 194 NSGASVRILSEEETPFYAAQDERIVDLQGEALKILKALEAIV 235
Score = 56 (24.8 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 18/68 (26%), Positives = 31/68 (45%)
Query: 258 SLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIR 317
S T+ + + ++G G NI I + SGA I + + + V I G ++
Sbjct: 342 SQTMQIPFSYAEDIIGVEGANIAYIRRRSGATITIKESPH----PDQITVEIKGTTSQVQ 397
Query: 318 TAESMIMQ 325
TAE +I +
Sbjct: 398 TAEQLIQE 405
Score = 45 (20.9 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 196 TLYSQTMTVPYTYA 209
T SQTM +P++YA
Sbjct: 339 TQVSQTMQIPFSYA 352
>TAIR|locus:2150956 [details] [associations]
symbol:AT5G15270 "AT5G15270" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003723 eggNOG:NOG315872 KO:K13162
EMBL:AK228673 EMBL:AK229313 IPI:IPI00527841 RefSeq:NP_197031.3
RefSeq:NP_851040.1 UniGene:At.31826 ProteinModelPortal:Q0WNX3
SMR:Q0WNX3 PaxDb:Q0WNX3 PRIDE:Q0WNX3 EnsemblPlants:AT5G15270.1
EnsemblPlants:AT5G15270.2 GeneID:831379 KEGG:ath:AT5G15270
TAIR:At5g15270 HOGENOM:HOG000240086 InParanoid:Q0WNX3 OMA:IYSPSDE
PhylomeDB:Q0WNX3 ProtClustDB:CLSN2679973 Genevestigator:Q0WNX3
Uniprot:Q0WNX3
Length = 548
Score = 130 (50.8 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 50/184 (27%), Positives = 86/184 (46%)
Query: 35 TYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEI 94
T R+L G+VIG+GG + ++ + ++I++ E PG +R+I I DE
Sbjct: 50 TVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIG---EAIPGCDERVITIYSPSDET 106
Query: 95 LRAVD--LVIDKL---LTELHAEDQADDV-------GTK-TKLRLIVPNSSCGSIIGKAG 141
D V+ L +H ADD G K +L+VP+ G I+G+ G
Sbjct: 107 NAFGDGEKVLSPAQDALFRIHDRVVADDARSEDSPEGEKQVTAKLLVPSDQIGCILGRGG 166
Query: 142 ATIKSFMDDSQAVIKISRLDHSY--YGLN-DRLVTLTGTLDEQMRALELILLKLSEDTLY 198
+++ ++ A I+I + D + LN D L+ ++G + +AL I +L E+
Sbjct: 167 QIVQNIRSETGAQIRIVK-DRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHENPSR 225
Query: 199 SQTM 202
SQ +
Sbjct: 226 SQNL 229
Score = 127 (49.8 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 50/171 (29%), Positives = 82/171 (47%)
Query: 28 SDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMI 87
+DP +IR + +VIGKGG+ IN + ++ A I++ S G D +I I
Sbjct: 277 NDPPATEFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRT--EGN-DCLITI 333
Query: 88 SGTIDEILR-AVDLVIDKLLT-ELHAEDQAD-DVGTKT-KLRLIVPNSSCGSIIGKAGAT 143
S E+ A I+ ++ + D+ + D G + RL+VP+S G I+GK GA
Sbjct: 334 SAR--EVFEDAYSPTIEAVMRLQPKCSDKVERDSGLVSFTTRLLVPSSRIGCILGKGGAI 391
Query: 144 IKSFMDDSQAVIKISRLDH--SYYGLNDRLVTLTGTLDEQMRALELILLKL 192
I ++A I+I ++ +D +V ++G LD AL I +L
Sbjct: 392 ITEMRRMTKANIRILGKENLPKVASDDDEMVQISGELDVAKEALIQITSRL 442
Score = 96 (38.9 bits), Expect = 3.8e-08, Sum P(3) = 3.8e-08
Identities = 23/94 (24%), Positives = 48/94 (51%)
Query: 14 VHGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQL--S 71
+H + +S S EK + LV + G ++G+GG + + +S++GA+I++
Sbjct: 126 IHDRVVADDARSEDSPEGEKQVTAKLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIVKD 185
Query: 72 RSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKL 105
R+ +D +I ISG + + +A+ + +L
Sbjct: 186 RNMPLCALNSDELIQISGEVLIVKKALLQIASRL 219
Score = 86 (35.3 bits), Expect = 3.8e-08, Sum P(3) = 3.8e-08
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 109 LHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLN 168
L+ + D T+ +RL+ P + S+IGK GA I +++A IK+ D S N
Sbjct: 271 LYQPPRNDPPATEFFIRLVSPVENIASVIGKGGALINQLRQETRATIKV---DSSRTEGN 327
Query: 169 DRLVTLT 175
D L+T++
Sbjct: 328 DCLITIS 334
Score = 57 (25.1 bits), Expect = 3.8e-08, Sum P(3) = 3.8e-08
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 263 VADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDF--FSGTSERKVTISG 311
V IG ++G+GG I E+ +++ A I++ + + + + V ISG
Sbjct: 376 VPSSRIGCILGKGGAIITEMRRMTKANIRILGKENLPKVASDDDEMVQISG 426
Score = 53 (23.7 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 266 EHIGFVVGRGGRNIMEISQISGARIKV 292
E+I V+G+GG I ++ Q + A IKV
Sbjct: 293 ENIASVIGKGGALINQLRQETRATIKV 319
>TAIR|locus:2140513 [details] [associations]
symbol:AT4G10070 "AT4G10070" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0009688 "abscisic acid biosynthetic process"
evidence=RCA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CP002687 GO:GO:0003723
UniGene:At.33655 IPI:IPI01020077 RefSeq:NP_192745.2
ProteinModelPortal:F4JLJ3 SMR:F4JLJ3 EnsemblPlants:AT4G10070.1
GeneID:826598 KEGG:ath:AT4G10070 OMA:PSTHAIG ArrayExpress:F4JLJ3
Uniprot:F4JLJ3
Length = 725
Score = 156 (60.0 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 52/184 (28%), Positives = 84/184 (45%)
Query: 3 TNESSYVPSPDVHGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQS 62
+ E+ + +V G++S V D T+ T R V + G +IGKGG TI Q
Sbjct: 150 SQENGKEENKEVDGEKSQKEV-----DGTQSTTR-RIDVPSSKVGVLIGKGGETIRYLQF 203
Query: 63 QSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHA----------E 112
SGA+IQ+ R E P + R + I G++ + + + +I ++ E A
Sbjct: 204 NSGAKIQILRDSEADPSSALRPVEIIGSV-ACIESAEKLISAVIAEAEAGGSPALVARGH 262
Query: 113 DQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLV 172
+G ++ + VPN G IIG+ G TIK+ S A ++ GL +R V
Sbjct: 263 PSTHAIGIPEQIEIKVPNDKVGLIIGRGGETIKNMQTRSGARTQLIPQHAEGDGLKERTV 322
Query: 173 TLTG 176
++G
Sbjct: 323 RISG 326
Score = 121 (47.7 bits), Expect = 0.00030, P = 0.00030
Identities = 28/70 (40%), Positives = 38/70 (54%)
Query: 34 PTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDE 93
P I V N G +IG+GG TI + Q++SGAR QL H G +R + ISG +
Sbjct: 271 PEQIEIKVPNDKVGLIIGRGGETIKNMQTRSGARTQLIPQHAEGDGLKERTVRISGDKMQ 330
Query: 94 ILRAVDLVID 103
I A D++ D
Sbjct: 331 IDIATDMIKD 340
>TAIR|locus:2035807 [details] [associations]
symbol:AT1G14170 "AT1G14170" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009737 "response to abscisic acid stimulus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0003723 EMBL:AC007576
KO:K13162 HOGENOM:HOG000240086 IPI:IPI00521103 PIR:C86275
RefSeq:NP_001117282.1 UniGene:At.43386 ProteinModelPortal:Q9XI71
SMR:Q9XI71 PRIDE:Q9XI71 EnsemblPlants:AT1G14170.3 GeneID:837976
KEGG:ath:AT1G14170 TAIR:At1g14170 OMA:GATIRVN PhylomeDB:Q9XI71
ProtClustDB:CLSN2690952 Genevestigator:Q9XI71 Uniprot:Q9XI71
Length = 479
Score = 151 (58.2 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 51/152 (33%), Positives = 79/152 (51%)
Query: 47 GAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGT--IDEILRAVDLVI-- 102
G VIGKGG IN + ++GA I+++ S D II IS ++ AV+ I
Sbjct: 281 GGVIGKGGGFINQIRQETGATIRVNTSET---DDDDCIIFISSKEFYEDQSPAVNAAIRL 337
Query: 103 DKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKI-SRLD 161
+ +E +D A+D+ T RL+V +S G +IGK GA I ++A I+I + D
Sbjct: 338 QQRCSEKVGKD-ANDLAIST--RLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKED 394
Query: 162 HSYYGLNDR-LVTLTGTLDEQMRALELILLKL 192
D +V +TG+ D M+AL ++L+L
Sbjct: 395 VPKIAREDEEMVQITGSPDAAMKALTQVILRL 426
Score = 110 (43.8 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 34/143 (23%), Positives = 69/143 (48%)
Query: 35 TYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRS----HE---FFPGTTDRIIMI 87
T R+L G++IGKGG +S++ + ++++ + E T + +
Sbjct: 44 TVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNHF 103
Query: 88 SGTIDEILRAVDLVI---DKLLTELHAEDQADD---VGTK--TKLRLIVPNSSCGSIIGK 139
+ + A+D + D ++ + +D DD +G K +R++VP+ G +IGK
Sbjct: 104 GDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIGK 163
Query: 140 AGATIKSFMDDSQAVIKISRLDH 162
G I++ +D+ A I++ + DH
Sbjct: 164 GGQVIQNLRNDTNAQIRVIK-DH 185
Score = 82 (33.9 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 28 SDPTEKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSH 74
+D EK T +R LV + G VIGKGG I + ++ + A+I++ + H
Sbjct: 138 NDLGEKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIKDH 185
Score = 77 (32.2 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 22/89 (24%), Positives = 44/89 (49%)
Query: 247 KFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDF--FSGTSE 304
K + +D S + V+ IG ++G+GG I E+ ++ A I++ + D + E
Sbjct: 344 KVGKDANDLAISTRLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDE 403
Query: 305 RKVTISG-PQRSIRTAESMIMQKVAYASD 332
V I+G P +++ +I++ A + D
Sbjct: 404 EMVQITGSPDAAMKALTQVILRLRANSFD 432
Score = 64 (27.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 266 EHIGFVVGRGGRNIMEISQISGARIKVS 293
E++G V+G+GG I +I Q +GA I+V+
Sbjct: 278 ENVGGVIGKGGGFINQIRQETGATIRVN 305
Score = 54 (24.1 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 127 IVPNSSCGSIIGKAGATIKSFMDDSQAVIKIS 158
I P + G +IGK G I ++ A I+++
Sbjct: 274 ICPAENVGGVIGKGGGFINQIRQETGATIRVN 305
>UNIPROTKB|J9P8J3 [details] [associations]
symbol:J9P8J3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000047704 Uniprot:J9P8J3
Length = 399
Score = 109 (43.4 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 125 RLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRA 184
++ +P GSIIGK G IK +S A IKI D G DR++T+TGT D+ A
Sbjct: 327 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DEPLEGSEDRIITITGTQDQIQNA 383
Query: 185 LELI 188
L+
Sbjct: 384 QYLL 387
Score = 100 (40.3 bits), Expect = 9.5e-08, Sum P(3) = 9.5e-08
Identities = 24/90 (26%), Positives = 45/90 (50%)
Query: 244 GGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTS 303
GGR + + + + + G ++G+GG+ I +I SGA IK+ + G+
Sbjct: 311 GGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSE 367
Query: 304 ERKVTISGPQRSIRTAESMIMQKVAYASDR 333
+R +TI+G Q I+ A+ ++ V S +
Sbjct: 368 DRIITITGTQDQIQNAQYLLQNSVKQYSGK 397
Score = 80 (33.2 bits), Expect = 9.5e-08, Sum P(3) = 9.5e-08
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 31 TEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISG- 89
T++ +R L+ + AGAVIGKGG I ++ A + + S P +RI+ IS
Sbjct: 13 TDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSG--P---ERILSISAD 67
Query: 90 --TIDEILRAV 98
TI EIL+ +
Sbjct: 68 IETIGEILKKI 78
Score = 73 (30.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 25/99 (25%), Positives = 50/99 (50%)
Query: 106 LTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYY 165
+ E A ++ + +LR+++ + + G++IGK G IK+ D A + + D S
Sbjct: 1 MEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVP--DSS-- 56
Query: 166 GLNDRLVTLTGTLDEQMRALELILLKLSEDT-LYSQTMT 203
G +R+++++ ++ L+ I+ L E L S T T
Sbjct: 57 G-PERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 94
Score = 65 (27.9 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 11/34 (32%), Positives = 23/34 (67%)
Query: 75 EFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108
E P +TDR+++I G D ++ + +++D L++E
Sbjct: 119 ECCPHSTDRVVLIGGKPDRVVECIKIILD-LISE 151
Score = 49 (22.3 bits), Expect = 9.5e-08, Sum P(3) = 9.5e-08
Identities = 22/86 (25%), Positives = 38/86 (44%)
Query: 148 MDDSQAVIKISR--LDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTV- 204
++++Q IK+ + HS DR+V + G D + +++IL +SE + +
Sbjct: 107 LNNTQTTIKLFQECCPHS----TDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYD 162
Query: 205 P------YTYAG--VFFSGFHGMPYG 222
P Y Y G + F G P G
Sbjct: 163 PNFYDETYDYGGFTMMFDDRRGRPVG 188
>RGD|1311196 [details] [associations]
symbol:Tdrkh "tudor and KH domain containing" species:10116
"Rattus norvegicus" [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1311196 GO:GO:0003723 EMBL:CH474015 eggNOG:NOG262512
HOGENOM:HOG000037932 OrthoDB:EOG4T4CV4 UniGene:Rn.98848
EMBL:BC059161 IPI:IPI00370637 SMR:Q6PCT7 UCSC:RGD:1311196
HOVERGEN:HBG062756 InParanoid:Q6PCT7 Genevestigator:Q6PCT7
Uniprot:Q6PCT7
Length = 296
Score = 142 (55.0 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 49/147 (33%), Positives = 73/147 (49%)
Query: 49 VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108
+IG+ G+ I + Q+GARI + G +R+++ISG ++ +A I ++LTE
Sbjct: 67 IIGRQGANIKQLRKQTGARIDVDTEDV---GD-ERVLLISGFPVQVCKA-KAAIHQILTE 121
Query: 109 LHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLN 168
T +L VP S G IIG+ G TI+S S A I + L+
Sbjct: 122 ----------NTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLS 171
Query: 169 DRLVTLTGTLDEQMRALELILLKLSED 195
RL+ ++GT E A LIL K+SED
Sbjct: 172 -RLIKISGTQKEVAAAKHLILEKVSED 197
Score = 100 (40.3 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 261 IGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTS--ERKVTISGPQRSIRT 318
+ V +G ++GRGG I I + SGA+I + GT R + ISG Q+ +
Sbjct: 129 LSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESE---GTLLLSRLIKISGTQKEVAA 185
Query: 319 AESMIMQKVA 328
A+ +I++KV+
Sbjct: 186 AKHLILEKVS 195
Score = 67 (28.6 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 26/100 (26%), Positives = 48/100 (48%)
Query: 112 EDQADDVGTKT-KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDR 170
E++ VG ++ + VP + IIG+ GA IK + A I + D G ++R
Sbjct: 42 EERLTFVGEDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTED---VG-DER 97
Query: 171 LVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPYTYAG 210
++ ++G + +A I L+E+T + ++VP G
Sbjct: 98 VLLISGFPVQVCKAKAAIHQILTENTPVFEQLSVPQRSVG 137
>UNIPROTKB|I3LP40 [details] [associations]
symbol:TDRKH "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 InterPro:IPR002999
GO:GO:0005739 GO:GO:0003723 Pfam:PF00567 PROSITE:PS50304
GeneTree:ENSGT00530000063224 OMA:FHADEYL EMBL:FP340554
Ensembl:ENSSSCT00000032144 Uniprot:I3LP40
Length = 558
Score = 145 (56.1 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 49/147 (33%), Positives = 75/147 (51%)
Query: 49 VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108
+IG+ G+ I + Q+GARI + + + G +R+++ISG ++ +A I ++LTE
Sbjct: 67 IIGRQGANIKQLRKQTGARIDVD-TEDI--GD-ERVLLISGFPVQVCKA-KAAIHQILTE 121
Query: 109 LHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLN 168
T +L VP S G IIG+ G TI+S S A I + L+
Sbjct: 122 ----------NTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLS 171
Query: 169 DRLVTLTGTLDEQMRALELILLKLSED 195
RL+ ++GT E A LIL K+SED
Sbjct: 172 -RLIKISGTQKEVAAAKHLILEKVSED 197
Score = 100 (40.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 261 IGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTS--ERKVTISGPQRSIRT 318
+ V +G ++GRGG I I + SGA+I + GT R + ISG Q+ +
Sbjct: 129 LSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESE---GTLLLSRLIKISGTQKEVAA 185
Query: 319 AESMIMQKVA 328
A+ +I++KV+
Sbjct: 186 AKHLILEKVS 195
Score = 76 (31.8 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 28/100 (28%), Positives = 49/100 (49%)
Query: 112 EDQADDVGTKT-KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDR 170
E++ VG ++ + VP S IIG+ GA IK + A I + D G ++R
Sbjct: 42 EERLTFVGEDDIEIEMRVPQESVKLIIGRQGANIKQLRKQTGARIDVDTED---IG-DER 97
Query: 171 LVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPYTYAG 210
++ ++G + +A I L+E+T S+ ++VP G
Sbjct: 98 VLLISGFPVQVCKAKAAIHQILTENTPVSEQLSVPQRSVG 137
>UNIPROTKB|Q9Y2W6 [details] [associations]
symbol:TDRKH "Tudor and KH domain-containing protein"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
InterPro:IPR002999 GO:GO:0005739 GO:GO:0003723 Pfam:PF00567
SMART:SM00333 PROSITE:PS50304 EMBL:CH471121 EMBL:AL589765
EMBL:AF119121 EMBL:AF227192 EMBL:BC022467 IPI:IPI00009982
IPI:IPI01013931 RefSeq:NP_001077432.1 RefSeq:NP_001077433.1
RefSeq:NP_001077434.1 RefSeq:NP_006853.2 UniGene:Hs.144439 PDB:2DIQ
PDB:3FDR PDBsum:2DIQ PDBsum:3FDR ProteinModelPortal:Q9Y2W6
SMR:Q9Y2W6 DIP:DIP-59459N STRING:Q9Y2W6 PhosphoSite:Q9Y2W6
DMDM:39932455 PaxDb:Q9Y2W6 PRIDE:Q9Y2W6 DNASU:11022
Ensembl:ENST00000368822 Ensembl:ENST00000368824
Ensembl:ENST00000368825 Ensembl:ENST00000368827
Ensembl:ENST00000458431 GeneID:11022 KEGG:hsa:11022 UCSC:uc001eyy.2
CTD:11022 GeneCards:GC01M151745 HGNC:HGNC:11713 HPA:HPA016419
HPA:HPA019625 MIM:609501 neXtProt:NX_Q9Y2W6 PharmGKB:PA36431
eggNOG:NOG262512 HOGENOM:HOG000037932 HOVERGEN:HBG055309
InParanoid:Q9Y2W6 OMA:FHADEYL OrthoDB:EOG4T4CV4 PhylomeDB:Q9Y2W6
EvolutionaryTrace:Q9Y2W6 GenomeRNAi:11022 NextBio:41878
ArrayExpress:Q9Y2W6 Bgee:Q9Y2W6 CleanEx:HS_TDRKH
Genevestigator:Q9Y2W6 GermOnline:ENSG00000182134 Uniprot:Q9Y2W6
Length = 561
Score = 145 (56.1 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 49/147 (33%), Positives = 73/147 (49%)
Query: 49 VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108
+IG+ G+ I + Q+GARI + G +R+++ISG ++ +A I ++LTE
Sbjct: 67 IIGRQGANIKQLRKQTGARIDVDTEDV---GD-ERVLLISGFPVQVCKA-KAAIHQILTE 121
Query: 109 LHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLN 168
T +L VP S G IIG+ G TI+S S A I + L+
Sbjct: 122 ----------NTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLS 171
Query: 169 DRLVTLTGTLDEQMRALELILLKLSED 195
RL+ ++GT E A LIL K+SED
Sbjct: 172 -RLIKISGTQKEVAAAKHLILEKVSED 197
Score = 100 (40.3 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 261 IGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTS--ERKVTISGPQRSIRT 318
+ V +G ++GRGG I I + SGA+I + GT R + ISG Q+ +
Sbjct: 129 LSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESE---GTLLLSRLIKISGTQKEVAA 185
Query: 319 AESMIMQKVA 328
A+ +I++KV+
Sbjct: 186 AKHLILEKVS 195
Score = 73 (30.8 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 27/100 (27%), Positives = 49/100 (49%)
Query: 112 EDQADDVGTKT-KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDR 170
E++ VG ++ + VP + IIG+ GA IK + A I + D G ++R
Sbjct: 42 EERLTFVGEDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTED---VG-DER 97
Query: 171 LVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPYTYAG 210
++ ++G + +A I L+E+T S+ ++VP G
Sbjct: 98 VLLISGFPVQVCKAKAAIHQILTENTPVSEQLSVPQRSVG 137
>UNIPROTKB|E2RBJ9 [details] [associations]
symbol:TDRKH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
InterPro:IPR002999 GO:GO:0005739 GO:GO:0003723 Pfam:PF00567
SMART:SM00333 PROSITE:PS50304 GeneTree:ENSGT00530000063224
CTD:11022 EMBL:AAEX03011058 EMBL:AAEX03011059 RefSeq:XP_851426.2
Ensembl:ENSCAFT00000020405 GeneID:609125 KEGG:cfa:609125
Uniprot:E2RBJ9
Length = 563
Score = 145 (56.1 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 49/147 (33%), Positives = 73/147 (49%)
Query: 49 VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108
+IG+ G+ I + Q+GARI + G +R+++ISG ++ +A I ++LTE
Sbjct: 67 IIGRQGTNIKQLRKQTGARIDVDTEDV---GD-ERVLLISGFPVQVCKA-KAAIHQILTE 121
Query: 109 LHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLN 168
T +L VP S G IIG+ G TI+S S A I + L+
Sbjct: 122 ----------NTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLS 171
Query: 169 DRLVTLTGTLDEQMRALELILLKLSED 195
RL+ ++GT E A LIL K+SED
Sbjct: 172 -RLIKISGTQKEVAAAKHLILEKVSED 197
Score = 100 (40.3 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 261 IGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTS--ERKVTISGPQRSIRT 318
+ V +G ++GRGG I I + SGA+I + GT R + ISG Q+ +
Sbjct: 129 LSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESE---GTLLLSRLIKISGTQKEVAA 185
Query: 319 AESMIMQKVA 328
A+ +I++KV+
Sbjct: 186 AKHLILEKVS 195
Score = 69 (29.3 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 26/100 (26%), Positives = 48/100 (48%)
Query: 112 EDQADDVGTKT-KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDR 170
E++ VG ++ + VP + IIG+ G IK + A I + D G ++R
Sbjct: 42 EERLTFVGEDDIEIEMRVPQEAVKLIIGRQGTNIKQLRKQTGARIDVDTED---VG-DER 97
Query: 171 LVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPYTYAG 210
++ ++G + +A I L+E+T S+ ++VP G
Sbjct: 98 VLLISGFPVQVCKAKAAIHQILTENTPVSEQLSVPQRSVG 137
>UNIPROTKB|J9P0T0 [details] [associations]
symbol:TDRKH "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 InterPro:IPR002999 Pfam:PF01281 GO:GO:0003723
Pfam:PF00567 SMART:SM00333 PROSITE:PS50304 Gene3D:3.40.5.10
InterPro:IPR009027 InterPro:IPR020070 SUPFAM:SSF55658
GeneTree:ENSGT00530000063224 EMBL:AAEX03011058 EMBL:AAEX03011059
Ensembl:ENSCAFT00000048274 Uniprot:J9P0T0
Length = 605
Score = 145 (56.1 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 49/147 (33%), Positives = 73/147 (49%)
Query: 49 VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108
+IG+ G+ I + Q+GARI + G +R+++ISG ++ +A I ++LTE
Sbjct: 67 IIGRQGTNIKQLRKQTGARIDVDTEDV---GD-ERVLLISGFPVQVCKA-KAAIHQILTE 121
Query: 109 LHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLN 168
T +L VP S G IIG+ G TI+S S A I + L+
Sbjct: 122 ----------NTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLS 171
Query: 169 DRLVTLTGTLDEQMRALELILLKLSED 195
RL+ ++GT E A LIL K+SED
Sbjct: 172 -RLIKISGTQKEVAAAKHLILEKVSED 197
Score = 100 (40.3 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 261 IGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTS--ERKVTISGPQRSIRT 318
+ V +G ++GRGG I I + SGA+I + GT R + ISG Q+ +
Sbjct: 129 LSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESE---GTLLLSRLIKISGTQKEVAA 185
Query: 319 AESMIMQKVA 328
A+ +I++KV+
Sbjct: 186 AKHLILEKVS 195
Score = 69 (29.3 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 26/100 (26%), Positives = 48/100 (48%)
Query: 112 EDQADDVGTKT-KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDR 170
E++ VG ++ + VP + IIG+ G IK + A I + D G ++R
Sbjct: 42 EERLTFVGEDDIEIEMRVPQEAVKLIIGRQGTNIKQLRKQTGARIDVDTED---VG-DER 97
Query: 171 LVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPYTYAG 210
++ ++G + +A I L+E+T S+ ++VP G
Sbjct: 98 VLLISGFPVQVCKAKAAIHQILTENTPVSEQLSVPQRSVG 137
>MGI|MGI:1919884 [details] [associations]
symbol:Tdrkh "tudor and KH domain containing protein"
species:10090 "Mus musculus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 InterPro:IPR002999 MGI:MGI:1919884 GO:GO:0005739
GO:GO:0003723 Pfam:PF00567 SMART:SM00333 PROSITE:PS50304
GeneTree:ENSGT00530000063224 CTD:11022 eggNOG:NOG262512
HOGENOM:HOG000037932 HOVERGEN:HBG055309 OMA:FHADEYL
OrthoDB:EOG4T4CV4 EMBL:BC049363 IPI:IPI00330464 RefSeq:NP_082583.1
UniGene:Mm.331198 UniGene:Mm.470795 PDB:1WE8 PDBsum:1WE8
ProteinModelPortal:Q80VL1 SMR:Q80VL1 STRING:Q80VL1
PhosphoSite:Q80VL1 PaxDb:Q80VL1 PRIDE:Q80VL1
Ensembl:ENSMUST00000045245 Ensembl:ENSMUST00000166032 GeneID:72634
KEGG:mmu:72634 UCSC:uc008qge.1 InParanoid:Q80VL1
EvolutionaryTrace:Q80VL1 NextBio:336631 Bgee:Q80VL1
CleanEx:MM_TDRKH Genevestigator:Q80VL1
GermOnline:ENSMUSG00000041912 Uniprot:Q80VL1
Length = 560
Score = 142 (55.0 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 49/147 (33%), Positives = 73/147 (49%)
Query: 49 VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108
+IG+ G+ I + Q+GARI + G +R+++ISG ++ +A I ++LTE
Sbjct: 67 IIGRQGANIKQLRKQTGARIDVDTEDV---GD-ERVLLISGFPVQVCKA-KAAIHQILTE 121
Query: 109 LHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLN 168
T +L VP S G IIG+ G TI+S S A I + L+
Sbjct: 122 ----------NTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLS 171
Query: 169 DRLVTLTGTLDEQMRALELILLKLSED 195
RL+ ++GT E A LIL K+SED
Sbjct: 172 -RLIKISGTQKEVAAAKHLILEKVSED 197
Score = 100 (40.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 261 IGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTS--ERKVTISGPQRSIRT 318
+ V +G ++GRGG I I + SGA+I + GT R + ISG Q+ +
Sbjct: 129 LSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESE---GTLLLSRLIKISGTQKEVAA 185
Query: 319 AESMIMQKVA 328
A+ +I++KV+
Sbjct: 186 AKHLILEKVS 195
Score = 67 (28.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 26/100 (26%), Positives = 48/100 (48%)
Query: 112 EDQADDVGTKT-KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDR 170
E++ VG ++ + VP + IIG+ GA IK + A I + D G ++R
Sbjct: 42 EERLTFVGEDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTED---VG-DER 97
Query: 171 LVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPYTYAG 210
++ ++G + +A I L+E+T + ++VP G
Sbjct: 98 VLLISGFPVQVCKAKAAIHQILTENTPVFEQLSVPQRSVG 137
>UNIPROTKB|G3V8T7 [details] [associations]
symbol:Tdrkh "RCG51933, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
InterPro:IPR002999 RGD:1311196 GO:GO:0003723 Pfam:PF00567
SMART:SM00333 PROSITE:PS50304 EMBL:CH474015
GeneTree:ENSGT00530000063224 CTD:11022 EMBL:AC133978
RefSeq:NP_001014060.2 UniGene:Rn.98848 PRIDE:G3V8T7
Ensembl:ENSRNOT00000028299 GeneID:310652 KEGG:rno:310652
NextBio:662332 Uniprot:G3V8T7
Length = 560
Score = 142 (55.0 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 49/147 (33%), Positives = 73/147 (49%)
Query: 49 VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108
+IG+ G+ I + Q+GARI + G +R+++ISG ++ +A I ++LTE
Sbjct: 67 IIGRQGANIKQLRKQTGARIDVDTEDV---GD-ERVLLISGFPVQVCKA-KAAIHQILTE 121
Query: 109 LHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLN 168
T +L VP S G IIG+ G TI+S S A I + L+
Sbjct: 122 ----------NTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLS 171
Query: 169 DRLVTLTGTLDEQMRALELILLKLSED 195
RL+ ++GT E A LIL K+SED
Sbjct: 172 -RLIKISGTQKEVAAAKHLILEKVSED 197
Score = 100 (40.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 261 IGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTS--ERKVTISGPQRSIRT 318
+ V +G ++GRGG I I + SGA+I + GT R + ISG Q+ +
Sbjct: 129 LSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESE---GTLLLSRLIKISGTQKEVAA 185
Query: 319 AESMIMQKVA 328
A+ +I++KV+
Sbjct: 186 AKHLILEKVS 195
Score = 67 (28.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 26/100 (26%), Positives = 48/100 (48%)
Query: 112 EDQADDVGTKT-KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDR 170
E++ VG ++ + VP + IIG+ GA IK + A I + D G ++R
Sbjct: 42 EERLTFVGEDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTED---VG-DER 97
Query: 171 LVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPYTYAG 210
++ ++G + +A I L+E+T + ++VP G
Sbjct: 98 VLLISGFPVQVCKAKAAIHQILTENTPVFEQLSVPQRSVG 137
>UNIPROTKB|F8VYI3 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 IPI:IPI01017995
ProteinModelPortal:F8VYI3 SMR:F8VYI3 PRIDE:F8VYI3
Ensembl:ENST00000483536 ArrayExpress:F8VYI3 Bgee:F8VYI3
Uniprot:F8VYI3
Length = 121
Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 12 PDVHGKRSTAPVKSLSSDPT---EKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGAR 67
PD + AP ++ S+ T E Y ++ L+ + AG++IGKGG TI Q ++GA
Sbjct: 23 PDSRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGAT 82
Query: 68 IQLSRSHEFFPG 79
I+LS+S +F+PG
Sbjct: 83 IKLSKSKDFYPG 94
Score = 94 (38.1 bits), Expect = 0.00048, P = 0.00048
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 241 PNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFS 300
P G K N +D L + + G ++G+GG+ I+++ + +GA IK+S DF+
Sbjct: 34 PEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYP 93
Query: 301 G 301
G
Sbjct: 94 G 94
>UNIPROTKB|F1MUI1 [details] [associations]
symbol:TDRKH "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 InterPro:IPR002999
GO:GO:0005739 GO:GO:0003723 Pfam:PF00567 PROSITE:PS50304
GeneTree:ENSGT00530000063224 OMA:FHADEYL EMBL:DAAA02007247
IPI:IPI00703713 Ensembl:ENSBTAT00000028777 Uniprot:F1MUI1
Length = 566
Score = 141 (54.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 48/147 (32%), Positives = 75/147 (51%)
Query: 49 VIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108
+IG+ G+ I + ++GARI + + + G +R+++ISG ++ +A I ++LTE
Sbjct: 67 IIGRQGANIKQLRKKTGARIDVD-TEDI--GD-ERVLLISGFPVQVCKA-KAAIHQILTE 121
Query: 109 LHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLN 168
T +L VP S G IIG+ G TI+S S A I + L+
Sbjct: 122 ----------NTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLS 171
Query: 169 DRLVTLTGTLDEQMRALELILLKLSED 195
RL+ ++GT E A LIL K+SED
Sbjct: 172 -RLIKISGTQKEVAAAKHLILEKVSED 197
Score = 100 (40.3 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 261 IGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTS--ERKVTISGPQRSIRT 318
+ V +G ++GRGG I I + SGA+I + GT R + ISG Q+ +
Sbjct: 129 LSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESE---GTLLLSRLIKISGTQKEVAA 185
Query: 319 AESMIMQKVA 328
A+ +I++KV+
Sbjct: 186 AKHLILEKVS 195
Score = 72 (30.4 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 27/100 (27%), Positives = 49/100 (49%)
Query: 112 EDQADDVGTKT-KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDR 170
E++ VG ++ + VP + IIG+ GA IK + A I + D G ++R
Sbjct: 42 EERLTFVGEDDIEIEMRVPQEAVKLIIGRQGANIKQLRKKTGARIDVDTED---IG-DER 97
Query: 171 LVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPYTYAG 210
++ ++G + +A I L+E+T S+ ++VP G
Sbjct: 98 VLLISGFPVQVCKAKAAIHQILTENTPVSEQLSVPQRSVG 137
>UNIPROTKB|Q7JPS0 [details] [associations]
symbol:Psi "PSI" species:7242 "Drosophila sp." [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0048024 "regulation
of mRNA splicing, via spliceosome" evidence=IMP] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IDA;IMP] [GO:0005685 "U1 snRNP" evidence=IPI]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0003729 GO:GO:0006397
GO:GO:0007283 GO:GO:0048025 GO:GO:0000381 InterPro:IPR015096
Pfam:PF09005 PDB:2BN5 PDBsum:2BN5 FlyBase:FBgn0014870 EMBL:S75665
PDB:2BN6 PDBsum:2BN6 ProteinModelPortal:Q7JPS0 SMR:Q7JPS0
InParanoid:Q7JPS0 EvolutionaryTrace:Q7JPS0 Uniprot:Q7JPS0
Length = 796
Score = 94 (38.1 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 30 PTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIM--- 86
P+ P Y ++ G VIGKGG TI Q ++GA++ + + G +I
Sbjct: 207 PSGYPPYQEIMIPGAKVGLVIGKGGDTIKQLQEKTGAKMIIIQD-----GPNQELIKPLR 261
Query: 87 ISGTIDEILRAVDLVIDKLLTELHAEDQ 114
ISG +I A +V+D L+ + A+ Q
Sbjct: 262 ISGEAQKIEHAKQMVLD-LIAQKDAQGQ 288
Score = 92 (37.4 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 30/121 (24%), Positives = 58/121 (47%)
Query: 45 LAGAVIGKGGS-TINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLV-- 101
+AGA +G+ + TI Q++SG ++Q+ + DR+IM+ G D + + +++
Sbjct: 132 VAGAFMGRSSNDTITHIQAESGVKVQVMQDQ-------DRVIMLRGQRDTVTKGREMIQN 184
Query: 102 ---------IDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQ 152
++ LLT ++ G +++P + G +IGK G TIK + +
Sbjct: 185 MANRAGGGQVEVLLT-INMPPPGPS-GYPPYQEIMIPGAKVGLVIGKGGDTIKQLQEKTG 242
Query: 153 A 153
A
Sbjct: 243 A 243
Score = 91 (37.1 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 119 GTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTL 178
G + ++ +VP S CG +IG+ G TIK S A ++ R ++ N++L GT
Sbjct: 424 GGREEITFLVPASKCGIVIGRGGETIKLINQQSGAHTEMDR--NASNPPNEKLFKSKGTT 481
Query: 179 DEQMRALELILLKLS 193
D+ A ++I K++
Sbjct: 482 DQVEAARQMISEKIN 496
Score = 84 (34.6 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 26/91 (28%), Positives = 43/91 (47%)
Query: 237 AHYGPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRG 296
++YG G Q +++ +T V G V+GRGG I I+Q SGA ++ DR
Sbjct: 411 SNYGYGYGVNHAQGGREE----ITFLVPASKCGIVIGRGGETIKLINQQSGAHTEM-DR- 464
Query: 297 DFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
+ + +E+ G + A MI +K+
Sbjct: 465 NASNPPNEKLFKSKGTTDQVEAARQMISEKI 495
Score = 84 (34.6 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 47 GAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGT---IDEILRAVDLVID 103
G VIGKGG I Q++ G ++Q + G DR +I GT +D+ R +D +I+
Sbjct: 328 GVVIGKGGDMIRKIQTECGCKLQFIQGKNDEMG--DRRCVIQGTRQQVDDAKRTIDGLIE 385
Query: 104 KLL 106
++
Sbjct: 386 NVM 388
Score = 76 (31.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 23/86 (26%), Positives = 40/86 (46%)
Query: 240 GPNMGGRKFQN-NKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIK-VSDRGD 297
GP MG F N N + T +A +G V+G+GG I +I G +++ + + D
Sbjct: 301 GPGMGFNNFNNGNGGESTEVFVPKIA---VGVVIGKGGDMIRKIQTECGCKLQFIQGKND 357
Query: 298 FFSGTSERKVTISGPQRSIRTAESMI 323
+R+ I G ++ + A+ I
Sbjct: 358 EMG---DRRCVIQGTRQQVDDAKRTI 380
Score = 51 (23.0 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 15/64 (23%), Positives = 29/64 (45%)
Query: 126 LIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGT---LDEQM 182
+ VP + G +IGK G I+ ++ K+ + + DR + GT +D+
Sbjct: 320 VFVPKIAVGVVIGKGGDMIRKIQ--TECGCKLQFIQGKNDEMGDRRCVIQGTRQQVDDAK 377
Query: 183 RALE 186
R ++
Sbjct: 378 RTID 381
>UNIPROTKB|I3LRF8 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005829 "cytosol" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 OMA:FWAPSVL EMBL:FP312938
Ensembl:ENSSSCT00000030310 Uniprot:I3LRF8
Length = 265
Score = 124 (48.7 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 50/202 (24%), Positives = 96/202 (47%)
Query: 12 PDVH-GKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQL 70
P +H G++ + V + T IR L+ G++IGK G T+ + +SGARI +
Sbjct: 23 PQLHFGRKMESKVSEGGLNVT---LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI 79
Query: 71 SRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKL--LTELHA--EDQADDVGTKTKLRL 126
S + P +RI+ I+G D I +A ++ K ++ + E + G T+ R+
Sbjct: 80 SEGN--CP---ERIVTITGPTDAIFKAFAMIAYKFEEVSRVSGLCEIAENAFGVWTQ-RV 133
Query: 127 IVPNSSCGSIIGKAGATIKSFMDDSQAVIKIS--RLDHSYYGLNDRLVTLTGTLDEQMRA 184
I + G ++G+ + A ++++ L +S +R VT++GT D ++
Sbjct: 134 ITLGVTVGCVLGQGPLCPPGLKGSTGAQVQVAGDMLPNS----TERAVTISGTPDAIIQC 189
Query: 185 LELILLKLSEDTLYSQTMTVPY 206
++ I + + E + T+PY
Sbjct: 190 VKQICVVMLESP--PKGATIPY 209
Score = 103 (41.3 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 29/89 (32%), Positives = 44/89 (49%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMR 183
+RL++ GSIIGK G T+K ++S A I IS + +R+VT+TG D +
Sbjct: 46 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN-----CPERIVTITGPTDAIFK 100
Query: 184 ALELILLKLSEDTLYSQTMTVPYTYAGVF 212
A +I K E + S + GV+
Sbjct: 101 AFAMIAYKFEEVSRVSGLCEIAENAFGVW 129
Score = 71 (30.1 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 259 LTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSI 316
+T+GV +G V+G+G + +GA+++V+ GD ++ER VTISG +I
Sbjct: 134 ITLGVT---VGCVLGQGPLCPPGLKGSTGAQVQVA--GDMLPNSTERAVTISGTPDAI 186
>WB|WBGene00016489 [details] [associations]
symbol:C36E6.1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 eggNOG:NOG300923 InterPro:IPR015096
Pfam:PF09005 GeneTree:ENSGT00650000093048 HSSP:Q96AE4 EMBL:FO080802
GeneID:181773 KEGG:cel:CELE_C36E6.1 CTD:181773 HOGENOM:HOG000018892
RefSeq:NP_510825.1 ProteinModelPortal:Q9BLA0 SMR:Q9BLA0
STRING:Q9BLA0 PaxDb:Q9BLA0 PRIDE:Q9BLA0 EnsemblMetazoa:C36E6.1b
UCSC:C36E6.1a WormBase:C36E6.1b InParanoid:Q9BLA0 OMA:IQLIQEN
NextBio:915282 ArrayExpress:Q9BLA0 Uniprot:Q9BLA0
Length = 641
Score = 125 (49.1 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 44/165 (26%), Positives = 77/165 (46%)
Query: 47 GAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLL 106
GA++G G I ++G +IQ + P +R + I G +++ L+ K +
Sbjct: 258 GAIMGLQGKNIKKLSDETGTKIQFLPDDD--PKLMERSLAIIGNKNKVYVCAQLI--KAI 313
Query: 107 TELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYG 166
E ++E V +++P S CG +IG+ G TIK +S A ++SR D +
Sbjct: 314 VEANSEAANAPV---VLFYMVIPASKCGLVIGRGGETIKQINQESGAHCELSR-DPNTNP 369
Query: 167 LNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPYTYAGV 211
+ V + G+ + A LI +K+ + + T PYT AG+
Sbjct: 370 IEKTFV-IRGSEAQVEHAKHLIRVKVGD--IPPNT---PYTPAGM 408
Score = 99 (39.9 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 47/178 (26%), Positives = 76/178 (42%)
Query: 15 HGKRSTAPVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSH 74
HG +S PV DP+ K T I + GA+IGKGG + +S + +QL + +
Sbjct: 142 HGIKS--PVVD-QGDPS-KIT-IEIPIPANKCGAIIGKGGEQMRKLRSWTNCNVQLLQDN 196
Query: 75 EFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGT----KTKLRLIVPN 130
T + + I+G ++ + LV D L A G L++ VP
Sbjct: 197 NI--ADTVKPLKITGDPKQVEQCRLLVADILACNDDTPASAMMAGNGPVATMSLQVKVPR 254
Query: 131 SSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELI 188
+ G+I+G G IK D++ KI L L +R + + G ++ +LI
Sbjct: 255 CTVGAIMGLQGKNIKKLSDETGT--KIQFLPDDDPKLMERSLAIIGNKNKVYVCAQLI 310
Score = 83 (34.3 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 40/178 (22%), Positives = 74/178 (41%)
Query: 41 VSNPLAGAVIGKGGSTINDFQSQSGARIQLS--------RSHEFFPGTTDRIIMISGTID 92
V G VIG+ G+ + +SG R+Q++ R E + G + I I
Sbjct: 61 VPEQCVGLVIGRNGAEVQAISQKSGCRVQVTVQPSSTGFRLVEIY-GIPENIERAKAYIS 119
Query: 93 EIL-RAV----DLVIDKLLTELHA-EDQADDVGTKTKL--RLIVPNSSCGSIIGKAGATI 144
E++ R L + + H + D G +K+ + +P + CG+IIGK G +
Sbjct: 120 EVVTRGTRQPGPLCQPVVHVQTHGIKSPVVDQGDPSKITIEIPIPANKCGAIIGKGGEQM 179
Query: 145 KSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTM 202
+ + +++ + ++ + +T EQ R L +L ++DT S M
Sbjct: 180 RKLRSWTNCNVQLLQDNNIADTVKPLKITGDPKQVEQCRLLVADILACNDDTPASAMM 237
Score = 82 (33.9 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 269 GFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
G V+GRGG I +I+Q SGA ++S D + E+ I G + + A+ +I KV
Sbjct: 338 GLVIGRGGETIKQINQESGAHCELSR--DPNTNPIEKTFVIRGSEAQVEHAKHLIRVKV 394
>RGD|1591989 [details] [associations]
symbol:LOC367191 "similar to Poly(rC)-binding protein 2
(Alpha-CP2) (Putative heterogeneous nuclear ribonucleoprotein X)
(hnRNP X) (CTBP) (CBP)" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1591989 GO:GO:0003723 IPI:IPI00555167
Ensembl:ENSRNOT00000037460 OMA:KARITIS Uniprot:D3ZTH3
Length = 107
Score = 111 (44.1 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 30/97 (30%), Positives = 51/97 (52%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G ++ + +SGARI +S + P RII ++G + I +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN--CP---KRIITLAGPTNAIFK 70
Query: 97 AVDLVIDKLLTELHAEDQADDVGTKTKL--RLIVPNS 131
A ++IDKL ++ + + + RL+VP S
Sbjct: 71 AFAMIIDKLEEDISSSMTNSTAARRPPVTSRLVVPAS 107
Score = 100 (40.3 bits), Expect = 0.00011, P = 0.00011
Identities = 27/78 (34%), Positives = 41/78 (52%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMR 183
+RL++ GSIIGK G ++K ++S A I IS + R++TL G + +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN-----CPKRIITLAGPTNAIFK 70
Query: 184 ALELILLKLSEDTLYSQT 201
A +I+ KL ED S T
Sbjct: 71 AFAMIIDKLEEDISSSMT 88
>UNIPROTKB|F8VW64 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003729 GO:GO:0000398 HGNC:HGNC:7886
ChiTaRS:NOVA1 EMBL:AL079343 EMBL:AL132716 IPI:IPI01020950
ProteinModelPortal:F8VW64 SMR:F8VW64 Ensembl:ENST00000549146
ArrayExpress:F8VW64 Bgee:F8VW64 Uniprot:F8VW64
Length = 96
Score = 111 (44.1 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 19 STAPVKSLSSDP--TEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSR 72
S KS SDP T + ++ +V N AG +IGKGG+T+ QSGA +QLS+
Sbjct: 32 SPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQ 87
Score = 99 (39.9 bits), Expect = 0.00014, P = 0.00014
Identities = 18/37 (48%), Positives = 30/37 (81%)
Query: 123 KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISR 159
++++IVPNS+ G IIGK GAT+K+ M+ S A +++S+
Sbjct: 51 QVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQ 87
>UNIPROTKB|E1B8C6 [details] [associations]
symbol:E1B8C6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:DAAA02008155
IPI:IPI00701183 Ensembl:ENSBTAT00000038517 OMA:YLINARE
Uniprot:E1B8C6
Length = 116
Score = 109 (43.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 29/73 (39%), Positives = 47/73 (64%)
Query: 256 TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRS 315
T+ LTI + IG ++GR G NI EI Q+S A+IK+++ + G+S R+VTI+G S
Sbjct: 41 THELTI--PNNLIGCIIGRQGANINEIRQMSRAQIKIANPVE---GSSGRQVTITGSAAS 95
Query: 316 IRTAESMIMQKVA 328
I A+ +I +++
Sbjct: 96 ISLAQYLINARLS 108
Score = 102 (41.0 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 29/79 (36%), Positives = 41/79 (51%)
Query: 117 DVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTG 176
D T+T L +PN+ G IIG+ GA I S+A IKI+ + G + R VT+TG
Sbjct: 35 DASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSRAQIKIA---NPVEGSSGRQVTITG 91
Query: 177 TLDEQMRALELILLKLSED 195
+ A LI +LS +
Sbjct: 92 SAASISLAQYLINARLSSE 110
>TAIR|locus:2066020 [details] [associations]
symbol:AT2G22600 "AT2G22600" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002685 GO:GO:0003723 KO:K13162
IPI:IPI00526685 RefSeq:NP_850026.1 UniGene:At.52868
ProteinModelPortal:F4IJK5 SMR:F4IJK5 PRIDE:F4IJK5
EnsemblPlants:AT2G22600.1 GeneID:816791 KEGG:ath:AT2G22600
OMA:RVVCHAS Uniprot:F4IJK5
Length = 632
Score = 91 (37.1 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 26/69 (37%), Positives = 36/69 (52%)
Query: 255 RTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQR 314
R +L + V + +G + GR G + + QISGA + V D +GT E V ISG
Sbjct: 562 RKITLELAVEKDALGSLYGRDGTGVDNLQQISGANVDVKDP----TGT-EATVLISGNPE 616
Query: 315 SIRTAESMI 323
RTA S+I
Sbjct: 617 QARTAMSLI 625
Score = 80 (33.2 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 37/176 (21%), Positives = 72/176 (40%)
Query: 31 TEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGT 90
TE+ + + ++ +AG +IGK G+ I Q+++GA I + + + +R++ +S
Sbjct: 273 TERKVVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISVGAPLKV---SGERVVTVSAR 329
Query: 91 ------IDEILRAVDLVIDKLLTELHAEDQADDV---GTKTKLRLIVPNSSCGSIIGKAG 141
A+ LV + + E+ E G K +L+VP+ S G G
Sbjct: 330 ENLESRYSHAQNALALVFARSV-EIDVEKGLRPGLHNGAIVKTKLLVPSHFANSFNGN-G 387
Query: 142 ATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTL 197
+ I + + N+ ++ + G +AL + KL E+ L
Sbjct: 388 NREAIIATGADVHISVGNQVLEWISENEVVIEIKGEYSHVQKALTHVSSKLRENLL 443
Score = 70 (29.7 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 21/74 (28%), Positives = 35/74 (47%)
Query: 29 DPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGT-TDRIIMI 87
D ++ Y L GAV+G GG + + SGA I++ GT D +I I
Sbjct: 134 DGEDEEAYCGILADRNQIGAVLGLGGKNVEWMRRNSGAMIRVLPPP--ICGTKNDELIQI 191
Query: 88 SGTIDEILRAVDLV 101
+G + + +A+ +V
Sbjct: 192 TGDVLAVKKALVMV 205
Score = 55 (24.4 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 113 DQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKI 157
D + K ++I + G IIGK G I++ +++ A I +
Sbjct: 268 DGGNSTERKVVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISV 312
>UNIPROTKB|K7GM69 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000034893 Uniprot:K7GM69
Length = 202
Score = 122 (48.0 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 31/123 (25%), Positives = 63/123 (51%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
+ + GA+IGK G+ I +GA I+++ + P ++R+++I+G + +
Sbjct: 25 VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG--PDVSERMVIITGPPEAQFK 82
Query: 97 AVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIK 156
A + KL E + + ++V + +R VP+S+ G +IGK G T+ + + A +
Sbjct: 83 AQGRIFGKLKEE-NFFNPKEEVKLEAHIR--VPSSTAGRVIGKGGKTVNELQNLTSAEVI 139
Query: 157 ISR 159
+ R
Sbjct: 140 VPR 142
Score = 99 (39.9 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMR 183
+ L +P + G+IIGK GA IK + A IKI+ + +++R+V +TG + Q +
Sbjct: 25 VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGP--DVSERMVIITGPPEAQFK 82
Query: 184 ALELILLKLSEDTLYS 199
A I KL E+ ++
Sbjct: 83 AQGRIFGKLKEENFFN 98
Score = 59 (25.8 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 248 FQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKV 292
F N K++ I V G V+G+GG+ + E+ ++ A + V
Sbjct: 96 FFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIV 140
>FB|FBgn0014870 [details] [associations]
symbol:Psi "P-element somatic inhibitor" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005685
"U1 snRNP" evidence=IPI] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0006397 "mRNA processing"
evidence=IDA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003729
GO:GO:0006397 GO:GO:0007283 GO:GO:0048025 GO:GO:0000381
EMBL:AL031863 InterPro:IPR015096 Pfam:PF09005 HSSP:Q96AE4
FlyBase:FBgn0014870 PIR:T13690 ProteinModelPortal:O96828 SMR:O96828
STRING:O96828 PRIDE:O96828 InParanoid:O96828 ArrayExpress:O96828
Bgee:O96828 Uniprot:O96828
Length = 806
Score = 94 (38.1 bits), Expect = 2.4e-05, Sum P(3) = 2.4e-05
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 30 PTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIM--- 86
P+ P Y ++ G VIGKGG TI Q ++GA++ + + G +I
Sbjct: 220 PSGYPPYQEIMIPGAKVGLVIGKGGDTIKQLQEKTGAKMIIIQD-----GPNQELIKPLR 274
Query: 87 ISGTIDEILRAVDLVIDKLLTELHAEDQ 114
ISG +I A +V+D L+ + A+ Q
Sbjct: 275 ISGEAQKIEHAKQMVLD-LIAQKDAQGQ 301
Score = 76 (31.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 23/86 (26%), Positives = 40/86 (46%)
Query: 240 GPNMGGRKFQN-NKDDRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIK-VSDRGD 297
GP MG F N N + T +A +G V+G+GG I +I G +++ + + D
Sbjct: 314 GPGMGFNNFNNGNGGESTEVFVPKIA---VGVVIGKGGDMIRKIQTECGCKLQFIQGKND 370
Query: 298 FFSGTSERKVTISGPQRSIRTAESMI 323
+R+ I G ++ + A+ I
Sbjct: 371 EMG---DRRCVIQGTRQQVDDAKRTI 393
Score = 69 (29.3 bits), Expect = 2.4e-05, Sum P(3) = 2.4e-05
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 271 VVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327
V+GRGG I I+Q SGA ++ DR + + +E+ G + A MI +K+
Sbjct: 450 VIGRGGETIKLINQQSGAHTEM-DR-NASNPPNEKLFKSKGTTDQVEAARQMISEKI 504
Score = 54 (24.1 bits), Expect = 2.4e-05, Sum P(3) = 2.4e-05
Identities = 18/85 (21%), Positives = 38/85 (44%)
Query: 126 LIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGT---LDEQM 182
+ VP + G +IGK G I+ ++ K+ + + DR + GT +D+
Sbjct: 333 VFVPKIAVGVVIGKGGDMIRKIQ--TECGCKLQFIQGKNDEMGDRRCVIQGTRQQVDDAK 390
Query: 183 RALELIL--LKLSEDTLYSQTMTVP 205
R ++ ++ + +S + T+P
Sbjct: 391 RTIDGLIENVMVSRKYFIKEANTLP 415
>UNIPROTKB|F8VRH0 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022901
Ensembl:ENST00000553064 ArrayExpress:F8VRH0 Bgee:F8VRH0
Uniprot:F8VRH0
Length = 310
Score = 114 (45.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 26/69 (37%), Positives = 46/69 (66%)
Query: 255 RTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQR 314
+T S + + ++ IG ++GR G I EI Q+SGA+IK+++ + G+++R+VTI+G
Sbjct: 127 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVE---GSTDRQVTITGSAA 183
Query: 315 SIRTAESMI 323
SI A+ +I
Sbjct: 184 SISLAQYLI 192
Score = 50 (22.7 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 64 SGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAV 98
+GA++Q++ + P +T+R I I+G I+ V
Sbjct: 2 TGAQVQVAG--DMLPNSTERAITIAGIPQSIIECV 34
>UNIPROTKB|H3BSS4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 PRIDE:H3BSS4 Ensembl:ENST00000547859
Uniprot:H3BSS4
Length = 184
Score = 118 (46.6 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 237 AHYGPNMGGRKFQNNKDD--RTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSD 294
+H+ G F D +T S + + ++ IG ++GR G I EI Q+SGA+IK+++
Sbjct: 85 SHFPMTHGNTGFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN 144
Query: 295 RGDFFSGTSERKVTISGPQRSIRTAESMI 323
+ G+++R+VTI+G SI A+ +I
Sbjct: 145 PVE---GSTDRQVTITGSAASISLAQYLI 170
>UNIPROTKB|C9JSZ1 [details] [associations]
symbol:FUBP1 "Far upstream element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
EMBL:AC096948 HGNC:HGNC:4004 ChiTaRS:FUBP1 IPI:IPI00641948
ProteinModelPortal:C9JSZ1 SMR:C9JSZ1 STRING:C9JSZ1 PRIDE:C9JSZ1
Ensembl:ENST00000421641 HOGENOM:HOG000110867 ArrayExpress:C9JSZ1
Bgee:C9JSZ1 Uniprot:C9JSZ1
Length = 232
Score = 121 (47.7 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 32/110 (29%), Positives = 56/110 (50%)
Query: 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEIL--- 95
+ V + + G +IG+GG I+ Q +SG +IQ++ P +R M++GT + +
Sbjct: 125 YKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLP---ERSCMLTGTPESVQSAK 181
Query: 96 RAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIK 145
R +D +++K D G + +++P S G +IGK G TIK
Sbjct: 182 RLLDQIVEKG-RPAPGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGETIK 229
>UNIPROTKB|E2RCG0 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03014980 ProteinModelPortal:E2RCG0 PRIDE:E2RCG0
Ensembl:ENSCAFT00000010995 NextBio:20853046 Uniprot:E2RCG0
Length = 291
Score = 123 (48.4 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 46/171 (26%), Positives = 82/171 (47%)
Query: 169 DRLVTLTGTLDEQMRALELILLKLSEDTLYS--QTMTVPY----TYAGVFFSGFHGMPYG 222
+R +T+ G + ++ I + + E S + +T+PY + + V F+G G Y
Sbjct: 7 ERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSSPVIFAG--GQAYT 64
Query: 223 XXXXXXX-----XXXHNTA---AHYGPNMGGRKFQNNKDD--RTNSLTIGVADEHIGFVV 272
H A +H+ G F D +T S + + ++ IG ++
Sbjct: 65 IQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQTTSHELTIPNDLIGCII 124
Query: 273 GRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMI 323
GR G I EI Q+SGA+IK+++ + G+++R+VTI+G SI A+ +I
Sbjct: 125 GRQGAKINEIRQMSGAQIKIANPVE---GSTDRQVTITGSAASISLAQYLI 172
>WB|WBGene00019692 [details] [associations]
symbol:M01A10.1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0006898 GO:GO:0003723 eggNOG:NOG300923
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
EMBL:FO081508 RefSeq:NP_491627.2 ProteinModelPortal:P91393
SMR:P91393 STRING:P91393 PaxDb:P91393 EnsemblMetazoa:M01A10.1
GeneID:187350 KEGG:cel:CELE_M01A10.1 UCSC:M01A10.1 CTD:187350
WormBase:M01A10.1 HOGENOM:HOG000018892 InParanoid:P91393
OMA:KARIMET NextBio:934978 Uniprot:P91393
Length = 586
Score = 127 (49.8 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 65/308 (21%), Positives = 124/308 (40%)
Query: 41 VSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDL 100
V GA++G GS I +++ +IQ + P +R +++ G +++
Sbjct: 243 VPRSTVGAIMGLQGSNIKKISNETETKIQFMPDDD--PKLMERTLVVIGNKNKVY----- 295
Query: 101 VIDKLLTELHAEDQADDVGTKTKL-RLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISR 159
V +LL ++ E +++ T L +++P S CG +IG+ G TI+ +S A ++SR
Sbjct: 296 VCARLLQKI-VEANSENANTPISLFYMLIPASKCGLVIGRGGETIRQINKESGAYCEMSR 354
Query: 160 LDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSE---DTLYSQTMTV-PYTYAG---VF 212
D S + + V + G+ + A LI +K+ + +T Y T P ++
Sbjct: 355 -DPSISAIEKQFV-IRGSETQVEHAKHLIRVKVGDIPPNTPYINTRAAQPLQFSHQNPTA 412
Query: 213 FSGFHGMPYGXXXXXXXXXXHNTAAHYGPNM---GGRK-FQNNKDDRTNSLTIGVADEHI 268
+ P+ AH PN+ R +Q++ +++ + +
Sbjct: 413 IDSWRAQPF-TTQHQNSLSLPQPQAHQFPNLMAYSARLGYQSHPPQHNSNVYASTIQQSL 471
Query: 269 GF----VVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIM 324
VV R + +S + GA S+ G +V S Q ++ A+
Sbjct: 472 NSPSASVVASNSRFLESLSSVEGA----SEPGPSLYARYVTEVEQSEKQLALLAAQKADS 527
Query: 325 QKVAYASD 332
Y SD
Sbjct: 528 SAPNYESD 535
>UNIPROTKB|C9J5V4 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HGNC:HGNC:8652
IPI:IPI00946082 ProteinModelPortal:C9J5V4 SMR:C9J5V4 STRING:C9J5V4
Ensembl:ENST00000497653 HOGENOM:HOG000213901 ArrayExpress:C9J5V4
Bgee:C9J5V4 Uniprot:C9J5V4
Length = 107
Score = 103 (41.3 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 26/83 (31%), Positives = 41/83 (49%)
Query: 113 DQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLV 172
++ ++ LR+++ GSIIGK G T+K + S A I IS +R+
Sbjct: 9 EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISE-----GSCPERIT 63
Query: 173 TLTGTLDEQMRALELILLKLSED 195
T+TG+ A+ +I KL ED
Sbjct: 64 TITGSTAAVFHAVSMIAFKLDED 86
Score = 92 (37.4 bits), Expect = 0.00079, P = 0.00079
Identities = 27/87 (31%), Positives = 42/87 (48%)
Query: 26 LSSDPTEKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRI 84
L +P T +R L+ G++IGK G T+ + QS ARI +S +RI
Sbjct: 8 LEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----SCPERI 62
Query: 85 IMISGTIDEILRAVDLVIDKLLTELHA 111
I+G+ + AV ++ KL +L A
Sbjct: 63 TTITGSTAAVFHAVSMIAFKLDEDLCA 89
>UNIPROTKB|C9JSA6 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HGNC:HGNC:8652
IPI:IPI00945164 ProteinModelPortal:C9JSA6 SMR:C9JSA6 STRING:C9JSA6
Ensembl:ENST00000489595 ArrayExpress:C9JSA6 Bgee:C9JSA6
Uniprot:C9JSA6
Length = 92
Score = 103 (41.3 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 26/83 (31%), Positives = 41/83 (49%)
Query: 113 DQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLV 172
++ ++ LR+++ GSIIGK G T+K + S A I IS +R+
Sbjct: 9 EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISE-----GSCPERIT 63
Query: 173 TLTGTLDEQMRALELILLKLSED 195
T+TG+ A+ +I KL ED
Sbjct: 64 TITGSTAAVFHAVSMIAFKLDED 86
Score = 92 (37.4 bits), Expect = 0.00079, P = 0.00079
Identities = 27/87 (31%), Positives = 42/87 (48%)
Query: 26 LSSDPTEKPTY-IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRI 84
L +P T +R L+ G++IGK G T+ + QS ARI +S +RI
Sbjct: 8 LEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-----SCPERI 62
Query: 85 IMISGTIDEILRAVDLVIDKLLTELHA 111
I+G+ + AV ++ KL +L A
Sbjct: 63 TTITGSTAAVFHAVSMIAFKLDEDLCA 89
>UNIPROTKB|H3BND9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 GO:GO:0003723
EMBL:AC068889 EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2
Ensembl:ENST00000550585 Uniprot:H3BND9
Length = 112
Score = 100 (40.3 bits), Expect = 0.00011, P = 0.00011
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 88 SGTIDEILRAVDLVIDKLLTELHAEDQADDVGTK--TKLRLIVPNSSCGSIIGKAGATIK 145
+G + I +A ++IDKL ++ + ++ LRL+VP S CGS+IGK G IK
Sbjct: 2 AGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIK 61
Query: 146 SFMD 149
+
Sbjct: 62 EIRE 65
>UNIPROTKB|D4ACH3 [details] [associations]
symbol:D4ACH3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OrthoDB:EOG46WZ8K IPI:IPI00464805 Ensembl:ENSRNOT00000055302
Uniprot:D4ACH3
Length = 282
Score = 118 (46.6 bits), Expect = 0.00014, P = 0.00014
Identities = 45/178 (25%), Positives = 86/178 (48%)
Query: 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILR 96
IR L+ G++IGK G ++ + +SGARI +S + P +RII ++G + I +
Sbjct: 16 IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN--CP---ERIITLAGPTNAIFK 70
Query: 97 AVDLVIDKLLTELHAEDQADDVGTKTK---LRLIV--PNSSCGSIIGKAGATIKS-FMDD 150
A ++IDKL + + + K +RLI P+ +II +G K +
Sbjct: 71 AFAMIIDKLEEDKICSLKVRSICYNKKVLTIRLIFFQPSLKANNIIYISGCREKEVILKS 130
Query: 151 SQAVIKIS--RLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPY 206
+ A ++++ L +S +R +T+ G + ++ I + + E + +T+PY
Sbjct: 131 TGAQVQVAGDMLPNS----TERAITIAGIPQSIIECVKQICVVMLESP--PKGVTIPY 182
>TAIR|locus:2168367 [details] [associations]
symbol:RCF3 "AT5G53060" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AY062686
EMBL:BT008402 IPI:IPI00520369 RefSeq:NP_200118.3 UniGene:At.27262
ProteinModelPortal:Q8W4B1 SMR:Q8W4B1 IntAct:Q8W4B1 PaxDb:Q8W4B1
PRIDE:Q8W4B1 EnsemblPlants:AT5G53060.1 GeneID:835386
KEGG:ath:AT5G53060 TAIR:At5g53060 eggNOG:NOG293832
InParanoid:Q8W4B1 OMA:THIRILP PhylomeDB:Q8W4B1
ProtClustDB:CLSN2680526 Genevestigator:Q8W4B1 Uniprot:Q8W4B1
Length = 652
Score = 96 (38.9 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 26/64 (40%), Positives = 32/64 (50%)
Query: 25 SLSSDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRI 84
S S T T R L + AG VIGK G+ I + +GA I + HE PG +RI
Sbjct: 58 SKSHPETMATTTYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINV---HELVPGDAERI 114
Query: 85 IMIS 88
I IS
Sbjct: 115 IEIS 118
Score = 70 (29.7 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 19/79 (24%), Positives = 38/79 (48%)
Query: 119 GTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSY---YGLNDRLVTLT 175
G + RL+V G ++GK G I+ +++ I+I + + L++ +V +
Sbjct: 173 GGRVVTRLVVSRMHVGCLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIV 232
Query: 176 GTLDEQMRALELILLKLSE 194
G L+ AL ++ +L E
Sbjct: 233 GELNAVKNALAIVSSRLRE 251
>UNIPROTKB|C9J7A9 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HGNC:HGNC:8652
IPI:IPI00945892 ProteinModelPortal:C9J7A9 SMR:C9J7A9 STRING:C9J7A9
Ensembl:ENST00000490063 ArrayExpress:C9J7A9 Bgee:C9J7A9
Uniprot:C9J7A9
Length = 86
Score = 97 (39.2 bits), Expect = 0.00023, P = 0.00023
Identities = 25/82 (30%), Positives = 40/82 (48%)
Query: 113 DQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLV 172
++ ++ LR+++ GSIIGK G T+K + S A I IS +R+
Sbjct: 9 EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISE-----GSCPERIT 63
Query: 173 TLTGTLDEQMRALELILLKLSE 194
T+TG+ A+ +I KL E
Sbjct: 64 TITGSTAAVFHAVSMIAFKLDE 85
>UNIPROTKB|Q5SZR4 [details] [associations]
symbol:TDRKH "Tudor and KH domain-containing protein"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 InterPro:IPR002999 GO:GO:0003723 Pfam:PF00567
SMART:SM00333 PROSITE:PS50304 EMBL:CH471121 EMBL:AL589765
UniGene:Hs.144439 HGNC:HGNC:11713 HOVERGEN:HBG055309
IPI:IPI00642210 SMR:Q5SZR4 STRING:Q5SZR4 Ensembl:ENST00000368823
UCSC:uc001ezb.4 Uniprot:Q5SZR4
Length = 557
Score = 120 (47.3 bits), Expect = 0.00027, P = 0.00027
Identities = 45/133 (33%), Positives = 65/133 (48%)
Query: 63 QSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKT 122
Q+GARI + G +R+++ISG ++ +A I ++LTE T
Sbjct: 77 QTGARIDVDTEDV---GD-ERVLLISGFPVQVCKA-KAAIHQILTE----------NTPV 121
Query: 123 KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQM 182
+L VP S G IIG+ G TI+S S A I + L+ RL+ ++GT E
Sbjct: 122 SEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLS-RLIKISGTQKEVA 180
Query: 183 RALELILLKLSED 195
A LIL K+SED
Sbjct: 181 AAKHLILEKVSED 193
Score = 100 (40.3 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 261 IGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTS--ERKVTISGPQRSIRT 318
+ V +G ++GRGG I I + SGA+I + GT R + ISG Q+ +
Sbjct: 125 LSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESE---GTLLLSRLIKISGTQKEVAA 181
Query: 319 AESMIMQKVA 328
A+ +I++KV+
Sbjct: 182 AKHLILEKVS 191
Score = 61 (26.5 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 27/100 (27%), Positives = 49/100 (49%)
Query: 112 EDQADDVGTKT-KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDR 170
E++ VG ++ + VP + IIG+ GA IK Q +I +D G ++R
Sbjct: 42 EERLTFVGEDDIEIEMRVPQEAVKLIIGRQGANIK------QTGARID-VDTEDVG-DER 93
Query: 171 LVTLTGTLDEQMRALELILLKLSEDTLYSQTMTVPYTYAG 210
++ ++G + +A I L+E+T S+ ++VP G
Sbjct: 94 VLLISGFPVQVCKAKAAIHQILTENTPVSEQLSVPQRSVG 133
>ZFIN|ZDB-GENE-050327-81 [details] [associations]
symbol:zgc:113056 "zgc:113056" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 InterPro:IPR002999
ZFIN:ZDB-GENE-050327-81 GO:GO:0003723 Pfam:PF00567 SMART:SM00333
PROSITE:PS50304 HOGENOM:HOG000037932 HOVERGEN:HBG055309
OrthoDB:EOG4T4CV4 EMBL:BC091814 IPI:IPI00495854
RefSeq:NP_001014377.1 UniGene:Dr.82759 ProteinModelPortal:Q58EP5
SMR:Q58EP5 STRING:Q58EP5 GeneID:541541 KEGG:dre:541541
InParanoid:Q58EP5 NextBio:20879320 ArrayExpress:Q58EP5
Uniprot:Q58EP5
Length = 573
Score = 120 (47.3 bits), Expect = 0.00028, P = 0.00028
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 261 IGVADEHIGFVVGRGGRNIMEISQISGARIKVS-DRGDFFSGTSERKVTISGPQRSIRTA 319
I V G ++GRGG + I+++SGAR+ S DRG K+TI+G ++ I++A
Sbjct: 158 IDVPQTAFGRIIGRGGETLKFINRVSGARVNCSKDRGRTLEENG--KITITGTRKEIQSA 215
Query: 320 ESMIMQKV 327
+ MIM+KV
Sbjct: 216 KEMIMEKV 223
>ASPGD|ASPL0000048811 [details] [associations]
symbol:AN2068 species:162425 "Emericella nidulans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0042175 "nuclear outer
membrane-endoplasmic reticulum membrane network" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0034605 "cellular response
to heat" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 EMBL:BN001307
GO:GO:0003723 EMBL:AACD01000032 eggNOG:NOG313207 RefSeq:XP_659672.1
ProteinModelPortal:Q5BBL2 EnsemblFungi:CADANIAT00008738
GeneID:2875227 KEGG:ani:AN2068.2 HOGENOM:HOG000183013 OMA:FPDKGDE
OrthoDB:EOG40ZV5P Uniprot:Q5BBL2
Length = 1305
Score = 89 (36.4 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 31/116 (26%), Positives = 58/116 (50%)
Query: 49 VIGKGGSTINDFQSQSGARIQLSRSHEFFP-GTTDRIIMISGTIDEILRAVDLVIDKLLT 107
+IGK G+ + + Q ++GAR+Q+ R+ E P G D + TID ++ + +
Sbjct: 228 IIGKQGAVVQELQQRTGARVQVPRAEE--PTGDEDED---NDTIDVLIEGDAVAAEMARR 282
Query: 108 ELHA--EDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLD 161
E+ A +++A ++ + LR I P I G A ++ + ++A I + R D
Sbjct: 283 EIEAIVKERASNMNLR--LRSIPPEFF-PFIAGPHNANLREIEERTKAQIHVPRYD 335
Score = 82 (33.9 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 17/73 (23%), Positives = 39/73 (53%)
Query: 254 DRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQ 313
D +++ T+ VA I ++G+ GR + ++ +GA+I V D + ++ I G +
Sbjct: 880 DHSHTATVSVAQGQIPSLIGQRGREMDKLRADTGAQIDVPGANDAPDTSGRVEIKIKGTK 939
Query: 314 RSIRTAESMIMQK 326
+ + A+ ++ Q+
Sbjct: 940 KQVEEAKKILQQR 952
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.374 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 336 326 0.00087 116 3 11 22 0.42 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 232
No. of states in DFA: 569 (61 KB)
Total size of DFA: 178 KB (2104 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.62u 0.15s 24.77t Elapsed: 00:00:01
Total cpu time: 24.68u 0.16s 24.84t Elapsed: 00:00:01
Start: Fri May 10 05:10:57 2013 End: Fri May 10 05:10:58 2013
WARNINGS ISSUED: 1