Query 019747
Match_columns 336
No_of_seqs 173 out of 1880
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 06:30:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019747.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019747hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2anr_A Neuro-oncological ventr 100.0 2.9E-28 1E-32 205.4 14.2 165 31-196 2-177 (178)
2 3krm_A Insulin-like growth fac 100.0 3.7E-27 1.3E-31 195.8 17.5 160 121-334 2-161 (163)
3 3n89_A Defective in GERM LINE 99.9 2.4E-27 8.2E-32 217.0 16.5 237 21-327 16-259 (376)
4 2jzx_A Poly(RC)-binding protei 99.9 5.2E-27 1.8E-31 194.3 14.5 156 32-194 2-159 (160)
5 3krm_A Insulin-like growth fac 99.9 2.1E-26 7.1E-31 191.3 17.1 155 34-195 2-157 (163)
6 2anr_A Neuro-oncological ventr 99.9 7E-27 2.4E-31 196.9 13.9 173 120-330 4-176 (178)
7 1j4w_A FUSE binding protein; s 99.9 3.6E-26 1.2E-30 191.8 15.4 156 34-192 2-174 (174)
8 2jvz_A KH type-splicing, FAR u 99.9 6.1E-26 2.1E-30 188.7 16.7 161 122-331 2-162 (164)
9 1j4w_A FUSE binding protein; s 99.9 3.5E-26 1.2E-30 191.9 14.1 172 122-327 3-174 (174)
10 2jzx_A Poly(RC)-binding protei 99.9 3.2E-26 1.1E-30 189.6 13.5 157 120-329 3-159 (160)
11 2jvz_A KH type-splicing, FAR u 99.9 7.8E-26 2.7E-30 188.0 15.2 156 35-194 2-160 (164)
12 2qnd_A FMR1 protein; KH domain 99.8 3.9E-20 1.3E-24 149.4 11.2 138 121-330 3-143 (144)
13 2qnd_A FMR1 protein; KH domain 99.8 1.9E-19 6.3E-24 145.5 10.2 137 34-194 3-142 (144)
14 2e3u_A PH-DIM2P, hypothetical 99.7 4.9E-18 1.7E-22 145.7 11.0 145 119-329 31-191 (219)
15 2e3u_A PH-DIM2P, hypothetical 99.7 2E-17 6.8E-22 141.9 10.1 142 36-196 35-193 (219)
16 1dtj_A RNA-binding neurooncolo 99.7 7.8E-17 2.7E-21 115.8 7.4 73 257-329 3-75 (76)
17 1ec6_A RNA-binding protein NOV 99.7 1.8E-16 6E-21 116.9 7.1 77 257-333 3-79 (87)
18 1zzk_A Heterogeneous nuclear r 99.6 8.4E-16 2.9E-20 111.9 9.8 74 255-331 5-78 (82)
19 2p2r_A Poly(RC)-binding protei 99.6 3.3E-16 1.1E-20 112.4 6.6 72 256-330 4-75 (76)
20 1dtj_A RNA-binding neurooncolo 99.6 7.4E-16 2.5E-20 110.6 8.0 74 34-107 2-75 (76)
21 1tua_A Hypothetical protein AP 99.6 7.9E-16 2.7E-20 128.7 9.3 141 36-195 5-161 (191)
22 1wvn_A Poly(RC)-binding protei 99.6 5.8E-16 2E-20 112.8 7.5 73 255-330 4-76 (82)
23 1tua_A Hypothetical protein AP 99.6 9.3E-16 3.2E-20 128.2 9.6 140 123-329 5-160 (191)
24 2axy_A Poly(RC)-binding protei 99.6 7.5E-16 2.6E-20 109.4 7.2 71 32-107 2-72 (73)
25 2axy_A Poly(RC)-binding protei 99.6 7.7E-16 2.6E-20 109.4 7.0 69 256-329 4-72 (73)
26 1j5k_A Heterogeneous nuclear r 99.6 9.1E-16 3.1E-20 113.4 6.9 75 254-331 11-85 (89)
27 1x4n_A FAR upstream element bi 99.6 2.3E-15 7.9E-20 111.9 9.0 74 256-332 14-87 (92)
28 2hh2_A KH-type splicing regula 99.6 2.6E-15 8.8E-20 114.8 7.6 74 257-330 7-80 (107)
29 1ec6_A RNA-binding protein NOV 99.6 2.5E-15 8.4E-20 110.7 6.6 75 34-108 2-76 (87)
30 2dgr_A Ring finger and KH doma 99.6 2.8E-15 9.6E-20 108.7 6.7 69 255-329 8-76 (83)
31 1zzk_A Heterogeneous nuclear r 99.6 1.4E-14 4.7E-19 105.4 9.9 74 32-108 4-77 (82)
32 2p2r_A Poly(RC)-binding protei 99.6 4.5E-15 1.6E-19 106.4 6.9 73 33-108 3-75 (76)
33 1x4m_A FAR upstream element bi 99.6 8.8E-15 3E-19 109.2 8.4 75 255-330 13-87 (94)
34 1wvn_A Poly(RC)-binding protei 99.6 6.9E-15 2.3E-19 107.0 7.6 75 31-108 2-76 (82)
35 2opv_A KHSRP protein; KH domai 99.5 1.5E-14 5.2E-19 105.9 8.5 72 256-328 13-84 (85)
36 1x4n_A FAR upstream element bi 99.5 2.3E-14 7.9E-19 106.5 9.3 74 32-108 12-85 (92)
37 1we8_A Tudor and KH domain con 99.5 3E-14 1E-18 108.3 9.8 75 256-331 14-88 (104)
38 2hh3_A KH-type splicing regula 99.5 1.4E-14 4.9E-19 110.1 7.8 73 257-332 11-83 (106)
39 1j5k_A Heterogeneous nuclear r 99.5 1.4E-14 4.9E-19 107.0 7.5 77 29-108 8-84 (89)
40 2ctm_A Vigilin; K homology typ 99.5 6.7E-14 2.3E-18 104.3 9.5 74 254-331 14-87 (95)
41 2hh2_A KH-type splicing regula 99.5 3.4E-14 1.2E-18 108.5 7.1 73 36-108 8-80 (107)
42 2ctl_A Vigilin; K homology typ 99.5 7.5E-14 2.6E-18 104.5 8.7 75 256-332 16-90 (97)
43 2opv_A KHSRP protein; KH domai 99.5 1.6E-13 5.5E-18 100.4 10.1 72 33-105 12-83 (85)
44 1vig_A Vigilin; RNA-binding pr 99.5 3.1E-14 1.1E-18 100.4 6.0 67 256-327 4-70 (71)
45 1x4m_A FAR upstream element bi 99.5 6.6E-14 2.3E-18 104.4 8.0 77 30-107 10-86 (94)
46 2cte_A Vigilin; K homology typ 99.5 6.1E-14 2.1E-18 104.6 7.7 75 254-333 14-88 (94)
47 2dgr_A Ring finger and KH doma 99.5 3.2E-14 1.1E-18 103.1 5.1 71 31-107 6-76 (83)
48 1we8_A Tudor and KH domain con 99.5 4E-13 1.4E-17 102.1 10.4 75 33-108 13-87 (104)
49 2hh3_A KH-type splicing regula 99.5 1.3E-13 4.6E-18 104.7 7.8 71 35-108 11-81 (106)
50 2ctf_A Vigilin; K homology typ 99.4 6.3E-15 2.2E-19 111.3 -1.2 69 257-333 27-96 (102)
51 3n89_A Defective in GERM LINE 99.4 3.8E-13 1.3E-17 123.3 9.7 144 119-329 27-174 (376)
52 2cte_A Vigilin; K homology typ 99.4 3.1E-13 1.1E-17 100.7 7.1 74 30-108 12-85 (94)
53 1vig_A Vigilin; RNA-binding pr 99.4 3.7E-13 1.3E-17 94.9 7.0 66 33-103 3-68 (71)
54 2ctl_A Vigilin; K homology typ 99.4 4.2E-13 1.4E-17 100.4 7.8 76 30-107 12-87 (97)
55 2ctm_A Vigilin; K homology typ 99.4 4.2E-13 1.4E-17 100.0 7.1 75 29-107 11-85 (95)
56 2ctk_A Vigilin; K homology typ 99.4 3.7E-13 1.3E-17 102.0 6.6 70 257-331 17-86 (104)
57 2ctj_A Vigilin; K homology typ 99.3 2.5E-12 8.6E-17 95.6 6.5 75 253-332 13-88 (95)
58 2ctk_A Vigilin; K homology typ 99.3 3.6E-12 1.2E-16 96.5 6.6 68 35-107 17-84 (104)
59 2ctj_A Vigilin; K homology typ 99.3 1.3E-11 4.3E-16 91.8 7.5 75 28-107 10-85 (95)
60 2ctf_A Vigilin; K homology typ 99.2 3.2E-13 1.1E-17 101.9 -2.2 88 87-195 5-93 (102)
61 2cpq_A FragIle X mental retard 99.0 2.8E-10 9.4E-15 83.0 5.5 64 255-326 13-78 (91)
62 2yqr_A KIAA0907 protein; struc 98.8 1.7E-08 5.7E-13 77.7 8.8 75 257-331 12-101 (119)
63 1k1g_A SF1-BO isoform; splicin 98.8 1.7E-08 5.7E-13 79.3 7.8 75 255-329 5-99 (131)
64 1k1g_A SF1-BO isoform; splicin 98.7 5.6E-08 1.9E-12 76.3 8.3 76 33-108 5-100 (131)
65 2cpq_A FragIle X mental retard 98.7 1.8E-08 6.2E-13 73.4 5.0 66 119-192 12-79 (91)
66 2yqr_A KIAA0907 protein; struc 98.7 1.2E-07 4.1E-12 72.9 9.2 75 33-107 10-99 (119)
67 2bl5_A MGC83862 protein, quaki 98.3 7.2E-07 2.5E-11 70.3 6.0 72 35-106 2-100 (140)
68 2bl5_A MGC83862 protein, quaki 98.3 9.4E-07 3.2E-11 69.7 6.0 73 257-329 2-101 (140)
69 3v69_A Protein filia; RNA-bind 98.3 1.5E-06 5.1E-11 67.1 6.6 73 257-333 56-128 (140)
70 3u1k_A Polyribonucleotide nucl 98.1 2.8E-06 9.5E-11 83.5 6.8 62 257-327 567-629 (630)
71 3u1k_A Polyribonucleotide nucl 98.1 4.3E-06 1.5E-10 82.2 7.4 89 95-192 540-629 (630)
72 2cxc_A NUSA; transcription ter 97.8 4.1E-06 1.4E-10 66.5 0.8 101 35-159 36-140 (144)
73 3v69_A Protein filia; RNA-bind 97.7 0.00011 3.8E-09 56.7 6.9 65 36-104 57-121 (140)
74 4aid_A Polyribonucleotide nucl 97.6 4.5E-05 1.5E-09 75.9 4.7 65 257-330 570-635 (726)
75 4aid_A Polyribonucleotide nucl 97.5 5.1E-05 1.7E-09 75.5 4.6 91 95-194 543-634 (726)
76 2cxc_A NUSA; transcription ter 97.4 7.2E-05 2.5E-09 59.3 3.2 104 122-293 36-139 (144)
77 2asb_A Transcription elongatio 96.5 0.0014 4.9E-08 56.4 3.3 97 45-162 127-224 (251)
78 2asb_A Transcription elongatio 96.2 0.0083 2.8E-07 51.7 6.4 41 257-297 184-224 (251)
79 1k0r_A NUSA; two component arr 96.1 0.0034 1.2E-07 57.2 3.5 97 44-161 249-346 (366)
80 3cdi_A Polynucleotide phosphor 95.8 0.0035 1.2E-07 62.6 2.7 89 96-193 534-623 (723)
81 1k0r_A NUSA; two component arr 95.8 0.02 6.7E-07 52.2 7.2 40 257-296 307-346 (366)
82 3cdi_A Polynucleotide phosphor 95.7 0.0034 1.2E-07 62.7 1.9 63 257-328 560-623 (723)
83 1e3p_A Guanosine pentaphosphat 95.2 0.0023 8E-08 64.1 -1.1 87 96-192 573-660 (757)
84 1e3p_A Guanosine pentaphosphat 95.0 0.0023 7.9E-08 64.2 -1.8 62 257-327 598-660 (757)
85 1hh2_P NUSA, N utilization sub 94.7 0.016 5.4E-07 52.6 3.1 91 45-159 246-340 (344)
86 1hh2_P NUSA, N utilization sub 93.8 0.065 2.2E-06 48.5 5.1 39 257-295 303-341 (344)
87 4hhu_A OR280; engineered prote 92.1 1.3 4.5E-05 32.9 9.1 48 277-331 103-150 (170)
88 2pt7_G HP1451, hypothetical pr 83.4 0.47 1.6E-05 37.6 1.9 66 36-108 34-99 (152)
89 1wh9_A 40S ribosomal protein S 81.2 0.54 1.9E-05 33.9 1.4 28 36-63 36-63 (92)
90 2pt7_G HP1451, hypothetical pr 76.2 1.1 3.9E-05 35.4 1.9 30 257-286 33-62 (152)
91 2ba0_A Archeal exosome RNA bin 68.4 10 0.00035 32.0 6.2 56 259-323 138-193 (229)
92 1wh9_A 40S ribosomal protein S 65.5 2.3 7.8E-05 30.5 1.3 29 257-285 35-63 (92)
93 3gku_A Probable RNA-binding pr 60.4 2.3 7.7E-05 36.0 0.6 67 37-108 94-160 (225)
94 2z0s_A Probable exosome comple 56.4 26 0.00088 29.6 6.6 57 259-324 150-207 (235)
95 3u5c_D RP13, YS3, 40S ribosoma 55.2 4.2 0.00014 34.6 1.4 28 37-64 46-73 (240)
96 3j20_C 30S ribosomal protein S 55.1 4.2 0.00014 33.9 1.3 27 37-63 42-68 (210)
97 2kl8_A OR15; structural genomi 54.7 30 0.001 22.6 5.1 46 278-330 22-67 (85)
98 2xzm_C KH domain containing pr 54.3 5.4 0.00018 34.0 1.9 28 36-63 48-75 (243)
99 2ba0_A Archeal exosome RNA bin 54.0 20 0.00069 30.2 5.5 60 39-108 140-199 (229)
100 3iz6_B 40S ribosomal protein S 50.4 4.3 0.00015 34.2 0.7 28 36-63 45-72 (227)
101 2z0s_A Probable exosome comple 50.2 36 0.0012 28.6 6.5 62 37-108 150-212 (235)
102 3iev_A GTP-binding protein ERA 48.8 10 0.00034 33.4 2.9 37 256-292 239-284 (308)
103 3r8n_C 30S ribosomal protein S 46.8 4.5 0.00015 33.6 0.3 34 37-70 63-100 (206)
104 3gku_A Probable RNA-binding pr 45.8 5.8 0.0002 33.5 0.8 35 257-291 92-126 (225)
105 2zkq_c 40S ribosomal protein S 45.0 4.9 0.00017 34.2 0.2 29 36-64 45-73 (243)
106 3i1m_C 30S ribosomal protein S 44.1 5.2 0.00018 33.9 0.2 26 37-62 64-89 (233)
107 2vqe_C 30S ribosomal protein S 42.7 7.8 0.00027 33.0 1.1 27 37-63 64-90 (239)
108 3iev_A GTP-binding protein ERA 41.3 10 0.00035 33.4 1.7 37 34-70 239-284 (308)
109 3bbn_C Ribosomal protein S3; s 39.3 7.1 0.00024 32.8 0.3 28 37-64 72-99 (218)
110 4hhu_A OR280; engineered prote 38.7 1.2E+02 0.004 22.4 12.4 97 81-195 41-149 (170)
111 2ja9_A Exosome complex exonucl 38.3 35 0.0012 27.4 4.3 58 259-325 93-152 (175)
112 3u5c_D RP13, YS3, 40S ribosoma 36.8 14 0.00049 31.2 1.8 28 258-285 45-72 (240)
113 1wf3_A GTP-binding protein; GT 32.6 15 0.00052 32.1 1.4 34 259-292 232-274 (301)
114 2xzm_C KH domain containing pr 32.3 18 0.0006 30.8 1.7 29 257-285 47-75 (243)
115 3j20_C 30S ribosomal protein S 31.7 17 0.00058 30.2 1.4 36 259-294 42-84 (210)
116 3iz6_B 40S ribosomal protein S 30.2 17 0.00057 30.6 1.1 29 257-285 44-72 (227)
117 3dhx_A Methionine import ATP-b 29.6 95 0.0033 22.3 5.2 51 141-191 35-88 (106)
118 4dh9_Y YAEJ; ribosome, YAEJ, r 29.2 62 0.0021 24.9 4.2 58 50-109 23-99 (140)
119 3dhx_A Methionine import ATP-b 29.1 63 0.0022 23.3 4.1 51 276-326 35-88 (106)
120 2y9k_A Protein INVG; protein t 27.4 2E+02 0.0067 21.6 7.6 25 302-326 109-133 (137)
121 2zkq_c 40S ribosomal protein S 25.5 17 0.00059 30.9 0.4 30 257-286 44-73 (243)
122 2vqe_C 30S ribosomal protein S 24.7 25 0.00085 29.8 1.2 27 259-285 64-90 (239)
123 3r8n_C 30S ribosomal protein S 24.4 16 0.00055 30.3 0.0 34 259-292 63-100 (206)
124 3bbn_C Ribosomal protein S3; s 23.9 23 0.00077 29.6 0.9 27 259-285 72-98 (218)
125 1wf3_A GTP-binding protein; GT 23.3 13 0.00046 32.5 -0.7 27 44-70 240-274 (301)
126 3i1m_C 30S ribosomal protein S 22.1 18 0.00063 30.5 -0.1 26 259-284 64-89 (233)
127 2jva_A Peptidyl-tRNA hydrolase 21.7 72 0.0025 23.3 3.1 27 84-110 69-100 (108)
128 1go3_E DNA-directed RNA polyme 20.8 52 0.0018 26.4 2.4 35 257-294 7-53 (187)
129 1go3_E DNA-directed RNA polyme 20.7 65 0.0022 25.8 3.1 28 34-64 6-34 (187)
130 1ghh_A DINI, DNA-damage-induci 20.6 2.1E+02 0.0073 19.6 5.2 47 277-333 24-73 (81)
No 1
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.95 E-value=2.9e-28 Score=205.38 Aligned_cols=165 Identities=35% Similarity=0.626 Sum_probs=138.5
Q ss_pred CCCcEEEEEEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHHHHhhcc
Q 019747 31 TEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELH 110 (336)
Q Consensus 31 ~~~~~~~~i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~~~~~ 110 (336)
.+++++++|+||.+++|.||||+|++|++|+++|||+|+|++..+..+++.+|+|.|+|+.+++.+|+.+|.+.+.+...
T Consensus 2 l~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~~~~~~~ 81 (178)
T 2anr_A 2 LGSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQ 81 (178)
T ss_dssp -CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHHHHHHHHHhccCC
Confidence 46789999999999999999999999999999999999998876677889999999999999999999999977655421
Q ss_pred ccc-----------cCCCCCCceeEEEEEecCccceeecCCChHHHHHHHhcCCEEEEeccCCCCCCCCceEEEEEcCHH
Q 019747 111 AED-----------QADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLD 179 (336)
Q Consensus 111 ~~~-----------~~~~~~~~~~~~l~ip~~~~g~iIG~~G~~Ik~I~~~tga~I~i~~~~~~~~~~~~r~v~I~G~~~ 179 (336)
... .....+...+.+|.||.+++|+|||++|.+|++|+++|||+|+|.+.. .++...++.|+|+|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~-~~~~~~~~~v~I~G~~~ 160 (178)
T 2anr_A 82 NVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKP-DGINLQNRVVTVSGEPE 160 (178)
T ss_dssp C-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC-----CCEEEEEEESSHH
T ss_pred ccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCC-CCCCCCceEEEEEcCHH
Confidence 110 001122357889999999999999999999999999999999998742 24556789999999999
Q ss_pred HHHHHHHHHHHHhhcCc
Q 019747 180 EQMRALELILLKLSEDT 196 (336)
Q Consensus 180 ~v~~A~~~i~~~l~~~~ 196 (336)
++.+|+.+|.+++.+++
T Consensus 161 ~v~~A~~~I~~~i~e~p 177 (178)
T 2anr_A 161 QNRKAVELIIQKIQEDP 177 (178)
T ss_dssp HHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 99999999999998753
No 2
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.95 E-value=3.7e-27 Score=195.79 Aligned_cols=160 Identities=24% Similarity=0.358 Sum_probs=134.6
Q ss_pred ceeEEEEEecCccceeecCCChHHHHHHHhcCCEEEEeccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHhhcCcCCCC
Q 019747 121 KTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQ 200 (336)
Q Consensus 121 ~~~~~l~ip~~~~g~iIG~~G~~Ik~I~~~tga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~i~~~l~~~~~~~~ 200 (336)
..+++|+||.+.+|.|||++|++|++|+++|||+|+|... ..+++.+|.|+|+|+++++.+|+.+|.+++.+...+.+
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~--~~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~~~~~ 79 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPP--ETPDSKVRMVIITGPPEAQFKAQGRIYGKLKEENFFGP 79 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCC--SSTTCSEEEEEEEECHHHHHHHHHHHHHHHHHTTSSCS
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCC--CCCCCCceEEEEEcCHHHHHHHHHHHHHHHhccccccc
Confidence 3578999999999999999999999999999999999873 34677899999999999999999999999887532211
Q ss_pred CcCCCccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCceEEEEEeccCcccceeccCCchHH
Q 019747 201 TMTVPYTYAGVFFSGFHGMPYGAVPPPVPAVPHNTAAHYGPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIM 280 (336)
Q Consensus 201 ~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~vp~~~vg~IIGk~G~~I~ 280 (336)
. .....+.++.||.+++|+|||++|++|+
T Consensus 80 ~---------------------------------------------------~~~~~~~~i~vp~~~~g~iIGkgG~~I~ 108 (163)
T 3krm_A 80 K---------------------------------------------------EEVKLETHIRVPASAAGRVIGKGGKTVN 108 (163)
T ss_dssp S---------------------------------------------------CCCCEEEEEEEETTTHHHHHCGGGHHHH
T ss_pred c---------------------------------------------------cCCceEEEEEcChhheeeEEcCCChHHH
Confidence 0 1223677999999999999999999999
Q ss_pred HHHhHhCCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHHHhhhhcc
Q 019747 281 EISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVAYASDRL 334 (336)
Q Consensus 281 ~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~~~ 334 (336)
+|++.|||+|.|++...+ ...+.+.|+|+|++++|+.|+.+|.+++.+..+..
T Consensus 109 ~i~~~tga~I~i~~~~~~-~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~~~~ 161 (163)
T 3krm_A 109 ELQNLTAAEVVVPRDQTP-DENDQVIVKIIGHFYASQMAQRKIRDILAQVKQQH 161 (163)
T ss_dssp HHHHHHCCEEECCTTCCC-CTTSEEEEEEEECHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHhCCeEEECCCCCC-CCCCceEEEEEeCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999876432 22344589999999999999999999999876543
No 3
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.95 E-value=2.4e-27 Score=217.05 Aligned_cols=237 Identities=11% Similarity=0.083 Sum_probs=169.5
Q ss_pred CCCCCCCCCCCCCcEEEEEEEecCccceeecCCC--hHHHHHHHHhCCeEEEcCCC--CCCCCCCceEEEEEeeHHHHHH
Q 019747 21 APVKSLSSDPTEKPTYIRFLVSNPLAGAVIGKGG--STINDFQSQSGARIQLSRSH--EFFPGTTDRIIMISGTIDEILR 96 (336)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~i~ip~~~vg~iIGk~G--~~Ik~I~~~tg~~I~i~~~~--~~~~~~~~r~i~I~G~~~~v~~ 96 (336)
-|.+.+--+.....+++++.||..+|+.||||+| ++|++|+++|||+|+|++.+ ..-+......|+|+|..++|++
T Consensus 16 ~~~~~~~le~~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~ 95 (376)
T 3n89_A 16 LPSNIPMIEINPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDR 95 (376)
T ss_dssp BCCCSCCCCCCTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHH
T ss_pred CCccceEEEecCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHH
Confidence 4555667788899999999999999999999999 99999999999999998765 2222345678999999999999
Q ss_pred HHHHHHHHHHhhccccccCCCCCCceeEEEEEecCccceeecCCChHHHHHHHhcCCEEEEeccCCCCCCCCceEEEEEc
Q 019747 97 AVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTG 176 (336)
Q Consensus 97 A~~~I~~~i~~~~~~~~~~~~~~~~~~~~l~ip~~~~g~iIG~~G~~Ik~I~~~tga~I~i~~~~~~~~~~~~r~v~I~G 176 (336)
|+.+|.+. . +....+.+|...+.. ..-+..|.+ ++.++++|.|..... ..+.....|+|+|
T Consensus 96 AR~~I~~l-~--------------Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~-~~~~~sd~V~IrG 156 (376)
T 3n89_A 96 ARMLMRRN-C--------------HFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPE-KNGIVTTYLRITA 156 (376)
T ss_dssp HHHHHHHS-C--------------EEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC------CEEEEEEEE
T ss_pred HHHHHHhc-C--------------CceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCccc-ccCCCCCEEEEEc
Confidence 99999852 1 234555555433221 111234444 567899999976321 1111356899999
Q ss_pred CHHHHHHHHHHHHHHhhcCcCCCCCcCCCccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCc
Q 019747 177 TLDEQMRALELILLKLSEDTLYSQTMTVPYTYAGVFFSGFHGMPYGAVPPPVPAVPHNTAAHYGPNMGGRKFQNNKDDRT 256 (336)
Q Consensus 177 ~~~~v~~A~~~i~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 256 (336)
...++..|.+++..++......... ....
T Consensus 157 ~~~nv~~akeA~~~Ll~~l~~~e~~---------------------------------------------------~~~~ 185 (376)
T 3n89_A 157 REKNQHELIEAAKRLNEILFRESPA---------------------------------------------------PENN 185 (376)
T ss_dssp EGGGHHHHHHHHHHHHHHHCC--CC---------------------------------------------------CSSC
T ss_pred ChhhHHHHHHHHHHHHHHHHhhhcc---------------------------------------------------cccc
Confidence 9977766666655554331110000 1233
Q ss_pred eEEEEEeccCcccceeccCC--chHHHHHhHhCCeEEEccCCCCCC-CCcceEEEEEcChHhHHHHHHHHHHHH
Q 019747 257 NSLTIGVADEHIGFVVGRGG--RNIMEISQISGARIKVSDRGDFFS-GTSERKVTISGPQRSIRTAESMIMQKV 327 (336)
Q Consensus 257 ~~~~v~vp~~~vg~IIGk~G--~~I~~I~~~sga~I~i~~~~~~~~-~~~~r~v~I~G~~~~v~~A~~~I~~~i 327 (336)
.+..+.|+..+|.+|||++| ..|++|+++|||+|.+++.++..+ ......|+|+|+.++|..|+++|+++|
T Consensus 186 ~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 186 FTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGNIDNVLKARRYIMDLL 259 (376)
T ss_dssp EEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESCHHHHHHHHHHHHHTS
T ss_pred eEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeCHHHHHHHHHHHHhhC
Confidence 78899999999999999999 556999999999999987543211 124578999999999999999999875
No 4
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.95 E-value=5.2e-27 Score=194.33 Aligned_cols=156 Identities=29% Similarity=0.537 Sum_probs=135.8
Q ss_pred CCcEEEEEEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHHHHhhccc
Q 019747 32 EKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHA 111 (336)
Q Consensus 32 ~~~~~~~i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~~~~~~ 111 (336)
+..++++|+||.+.+|.||||+|++|++|+++|||+|+|++. ++.+|.|.|.|+.+++.+|+.+|.+.+.+.+..
T Consensus 2 ~~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~-----~~~~r~v~I~G~~~~v~~A~~~I~~~i~e~~~~ 76 (160)
T 2jzx_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-----NCPERIITLAGPTNAIFKAFAMIIDKLEEDISS 76 (160)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC-----TTTEEEEEEEEEHHHHHHHHHHHHHHHHHHHTS
T ss_pred CccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC-----CCCceEEEEEeCHHHHHHHHHHHHHHHHhhccc
Confidence 356899999999999999999999999999999999999864 367999999999999999999999888876543
Q ss_pred cccC--CCCCCceeEEEEEecCccceeecCCChHHHHHHHhcCCEEEEeccCCCCCCCCceEEEEEcCHHHHHHHHHHHH
Q 019747 112 EDQA--DDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELIL 189 (336)
Q Consensus 112 ~~~~--~~~~~~~~~~l~ip~~~~g~iIG~~G~~Ik~I~~~tga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~i~ 189 (336)
.... .......+.++.||.+++|+|||++|.+|++|++.|||+|.+.+ +..++..++.|+|.|+++++.+|+.+|.
T Consensus 77 ~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~--~~~~~~~~~~v~I~G~~~~v~~A~~~I~ 154 (160)
T 2jzx_A 77 SMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG--DMLPNSTERAITIAGIPQSIIECVKQIC 154 (160)
T ss_dssp CCCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCC--CCSTTCCEEEEEEEECHHHHHHHHHHHH
T ss_pred cCCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECC--CCCCCCCceEEEEEcCHHHHHHHHHHHH
Confidence 2111 11234588999999999999999999999999999999999986 3456778999999999999999999999
Q ss_pred HHhhc
Q 019747 190 LKLSE 194 (336)
Q Consensus 190 ~~l~~ 194 (336)
+++.+
T Consensus 155 ~~i~e 159 (160)
T 2jzx_A 155 VVMLE 159 (160)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98865
No 5
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.94 E-value=2.1e-26 Score=191.28 Aligned_cols=155 Identities=23% Similarity=0.350 Sum_probs=132.4
Q ss_pred cEEEEEEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHHHHhhccccc
Q 019747 34 PTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAED 113 (336)
Q Consensus 34 ~~~~~i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~~~~~~~~ 113 (336)
.-+++|+||.+.+|.||||+|++|++|+++|||+|+|++.. .+++.+|+|.|+|+++++.+|+.+|.+.+.+....
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~--~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~~~-- 77 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPE--TPDSKVRMVIITGPPEAQFKAQGRIYGKLKEENFF-- 77 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCS--STTCSEEEEEEEECHHHHHHHHHHHHHHHHHTTSS--
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCC--CCCCCceEEEEEcCHHHHHHHHHHHHHHHhccccc--
Confidence 35899999999999999999999999999999999998743 47789999999999999999999999887765111
Q ss_pred cCCCCCCceeEEEEEecCccceeecCCChHHHHHHHhcCCEEEEeccCCCCCCCCc-eEEEEEcCHHHHHHHHHHHHHHh
Q 019747 114 QADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLND-RLVTLTGTLDEQMRALELILLKL 192 (336)
Q Consensus 114 ~~~~~~~~~~~~l~ip~~~~g~iIG~~G~~Ik~I~~~tga~I~i~~~~~~~~~~~~-r~v~I~G~~~~v~~A~~~i~~~l 192 (336)
..........+|.||.+++|+|||++|.+|++|++.|||+|.|.++. .++.++ +.|+|.|+++++..|+.+|.+++
T Consensus 78 -~~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~--~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 154 (163)
T 3krm_A 78 -GPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQ--TPDENDQVIVKIIGHFYASQMAQRKIRDIL 154 (163)
T ss_dssp -CSSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTC--CCCTTSEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred -ccccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCC--CCCCCCceEEEEEeCHHHHHHHHHHHHHHH
Confidence 11123456779999999999999999999999999999999998632 233344 58999999999999999999999
Q ss_pred hcC
Q 019747 193 SED 195 (336)
Q Consensus 193 ~~~ 195 (336)
.+.
T Consensus 155 ~~~ 157 (163)
T 3krm_A 155 AQV 157 (163)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 6
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.94 E-value=7e-27 Score=196.91 Aligned_cols=173 Identities=29% Similarity=0.468 Sum_probs=136.3
Q ss_pred CceeEEEEEecCccceeecCCChHHHHHHHhcCCEEEEeccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHhhcCcCCC
Q 019747 120 TKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYS 199 (336)
Q Consensus 120 ~~~~~~l~ip~~~~g~iIG~~G~~Ik~I~~~tga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~i~~~l~~~~~~~ 199 (336)
..++++|+||.+++|.|||++|++|++|+++|||+|+|.+..+..++..+|.|+|+|+.+++.+|+.+|.+++.+.....
T Consensus 4 ~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~~~~~~~~~ 83 (178)
T 2anr_A 4 SQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQNV 83 (178)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHHHHHHHHTCCCCC-
T ss_pred CCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHHHHHHHHHhccCCcc
Confidence 45889999999999999999999999999999999999875555677889999999999999999999999997653221
Q ss_pred CCcCCCccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCceEEEEEeccCcccceeccCCchH
Q 019747 200 QTMTVPYTYAGVFFSGFHGMPYGAVPPPVPAVPHNTAAHYGPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNI 279 (336)
Q Consensus 200 ~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~vp~~~vg~IIGk~G~~I 279 (336)
.. ..+ ....+|. .........+.++.||.+++|+|||++|++|
T Consensus 84 ~~-~~~---------------~~~~~~~---------------------~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~I 126 (178)
T 2anr_A 84 AK-TEP---------------VSILQPQ---------------------TTVNPDRANQVKIIVPNSTAGLIIGKGGATV 126 (178)
T ss_dssp -----------------------------------------------------CGGGGEEEEEEEHHHHHHHHCGGGHHH
T ss_pred cc-CCc---------------ccccCCc---------------------cCCCCCCceEEEEEEchhheeeeECCCcHHH
Confidence 00 000 0000000 0000223478899999999999999999999
Q ss_pred HHHHhHhCCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHHHhh
Q 019747 280 MEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVAYA 330 (336)
Q Consensus 280 ~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 330 (336)
++|++.|||+|.|.+..+ .++..++.|+|+|++++++.|+.+|.++|.+.
T Consensus 127 k~i~~~tga~I~i~~~~~-~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e~ 176 (178)
T 2anr_A 127 KAIMEQSGAWVQLSQKPD-GINLQNRVVTVSGEPEQNRKAVELIIQKIQED 176 (178)
T ss_dssp HHHHHHSSCEEEECCCC-----CCEEEEEEESSHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHCCEEEEeCCCC-CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhC
Confidence 999999999999987532 23456899999999999999999999999864
No 7
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.94 E-value=3.6e-26 Score=191.83 Aligned_cols=156 Identities=31% Similarity=0.407 Sum_probs=129.6
Q ss_pred cEEEEEEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHHHHhhccccc
Q 019747 34 PTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAED 113 (336)
Q Consensus 34 ~~~~~i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~~~~~~~~ 113 (336)
..+++|+||.+++|.||||+|++|++|+++|||+|+|.+.. +++.+|+|.|+|+.+++.+|+.+|.+.+.+......
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~---~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~~~~ 78 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD---GTTPERIAQITGPPDRAQHAAEIITDLLRSVQAGNP 78 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCT---TSCSEEEEEEEECHHHHHHHHHHHHHHHHHHC----
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCC---CCCCccEEEEEeCHHHHHHHHHHHHHHHHhcccCCC
Confidence 57899999999999999999999999999999999997532 457899999999999999999999977765421100
Q ss_pred c-----------------CCCCCCceeEEEEEecCccceeecCCChHHHHHHHhcCCEEEEeccCCCCCCCCceEEEEEc
Q 019747 114 Q-----------------ADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTG 176 (336)
Q Consensus 114 ~-----------------~~~~~~~~~~~l~ip~~~~g~iIG~~G~~Ik~I~~~tga~I~i~~~~~~~~~~~~r~v~I~G 176 (336)
. ........+.+|.||.+++|.|||++|.+|++|++.|||+|+|.++...+.+..++.|+|.|
T Consensus 79 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G 158 (174)
T 1j4w_A 79 GGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRG 158 (174)
T ss_dssp -------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEEC
T ss_pred CCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEEC
Confidence 0 00011246889999999999999999999999999999999999754445567889999999
Q ss_pred CHHHHHHHHHHHHHHh
Q 019747 177 TLDEQMRALELILLKL 192 (336)
Q Consensus 177 ~~~~v~~A~~~i~~~l 192 (336)
+++++.+|+.+|.+++
T Consensus 159 ~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 159 TPQQIDYARQLIEEKI 174 (174)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999999874
No 8
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.94 E-value=6.1e-26 Score=188.66 Aligned_cols=161 Identities=22% Similarity=0.330 Sum_probs=131.0
Q ss_pred eeEEEEEecCccceeecCCChHHHHHHHhcCCEEEEeccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHhhcCcCCCCC
Q 019747 122 TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQT 201 (336)
Q Consensus 122 ~~~~l~ip~~~~g~iIG~~G~~Ik~I~~~tga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~i~~~l~~~~~~~~~ 201 (336)
++.+|+||.+++|.|||++|++|++|+++|||+|++.++. ..++..++.|+|+|+++++.+|+.+|.+++.+.....
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~-~~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~~~~-- 78 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDG-SQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQGG-- 78 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCT-TSSSSSCEEEEEEECHHHHHHHHHHHHHHTTCSSSCC--
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCC-CCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhccCCC--
Confidence 5789999999999999999999999999999999998632 3355678999999999999999999999987642110
Q ss_pred cCCCccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCceEEEEEeccCcccceeccCCchHHH
Q 019747 202 MTVPYTYAGVFFSGFHGMPYGAVPPPVPAVPHNTAAHYGPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIME 281 (336)
Q Consensus 202 ~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~vp~~~vg~IIGk~G~~I~~ 281 (336)
+.+. ..|++ ....+.++.||.+++|+|||++|++|++
T Consensus 79 ---------------------~~~~----------~~~~~------------~~~~~~~i~vp~~~~g~iIGk~G~~I~~ 115 (164)
T 2jvz_A 79 ---------------------FGDR----------NEYGS------------RIGGGIDVPVPRHSVGVVIGRSGEMIKK 115 (164)
T ss_dssp ---------------------CSSC----------SSCTT------------SCSSSBCCEEETTTHHHHHCSSSHHHHH
T ss_pred ---------------------CCCc----------cccCC------------CCCceEEEEEChhhccccCCCCcHhHHH
Confidence 0000 00110 0014468889999999999999999999
Q ss_pred HHhHhCCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHHHhhh
Q 019747 282 ISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVAYAS 331 (336)
Q Consensus 282 I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 331 (336)
|++.|||+|.|++.. +...++.|+|+|++++++.|+.+|.+++++..
T Consensus 116 i~~~tg~~I~i~~~~---~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~ 162 (164)
T 2jvz_A 116 IQNDAGVRIQFKQDD---GTGPEKIAHIMGPPDRCEHAARIINDLLQSLR 162 (164)
T ss_dssp HHHHTCCEEEECCCC---TTSSEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCeEEEeCCC---CCCCcEEEEEEcCHHHHHHHHHHHHHHHhhhh
Confidence 999999999998753 33558999999999999999999999987653
No 9
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.94 E-value=3.5e-26 Score=191.85 Aligned_cols=172 Identities=25% Similarity=0.347 Sum_probs=129.2
Q ss_pred eeEEEEEecCccceeecCCChHHHHHHHhcCCEEEEeccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHhhcCcCCCCC
Q 019747 122 TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQT 201 (336)
Q Consensus 122 ~~~~l~ip~~~~g~iIG~~G~~Ik~I~~~tga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~i~~~l~~~~~~~~~ 201 (336)
.+.+|+||.+++|.|||++|++|++|+++|||+|+|.+.+ ++..+|.|+|+|+++++.+|+.+|.+++.+.....
T Consensus 3 ~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~---~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~~~-- 77 (174)
T 1j4w_A 3 HMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD---GTTPERIAQITGPPDRAQHAAEIITDLLRSVQAGN-- 77 (174)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCT---TSCSEEEEEEEECHHHHHHHHHHHHHHHHHHC-----
T ss_pred eEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCC---CCCCccEEEEEeCHHHHHHHHHHHHHHHHhcccCC--
Confidence 5789999999999999999999999999999999998632 35578999999999999999999999987642100
Q ss_pred cCCCccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCceEEEEEeccCcccceeccCCchHHH
Q 019747 202 MTVPYTYAGVFFSGFHGMPYGAVPPPVPAVPHNTAAHYGPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIME 281 (336)
Q Consensus 202 ~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~vp~~~vg~IIGk~G~~I~~ 281 (336)
+. + ..|.+ +. +..+ ...|...+.....+.++.||.+++|+|||++|++|++
T Consensus 78 ------~~-----~--~~p~~---------~~---~~~~----~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~ 128 (174)
T 1j4w_A 78 ------PG-----G--PGPGG---------RG---RGRG----QGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKS 128 (174)
T ss_dssp -------------------------------------------------------CEEEEEEETTTHHHHHCGGGHHHHH
T ss_pred ------CC-----C--CCCCC---------CC---CCCC----CCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHH
Confidence 00 0 00000 00 0000 0000001112346889999999999999999999999
Q ss_pred HHhHhCCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHH
Q 019747 282 ISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327 (336)
Q Consensus 282 I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i 327 (336)
|++.|||+|.|.+..++..++.++.|+|+|++++++.|+.+|.++|
T Consensus 129 I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 129 ISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp HHHHHCCEEEEECCCTTTSCTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred HHHHHCCEEEECCCCCCCCCCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 9999999999998654444567899999999999999999998864
No 10
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.94 E-value=3.2e-26 Score=189.58 Aligned_cols=157 Identities=30% Similarity=0.464 Sum_probs=132.0
Q ss_pred CceeEEEEEecCccceeecCCChHHHHHHHhcCCEEEEeccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHhhcCcCCC
Q 019747 120 TKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYS 199 (336)
Q Consensus 120 ~~~~~~l~ip~~~~g~iIG~~G~~Ik~I~~~tga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~i~~~l~~~~~~~ 199 (336)
....++|+||.+.+|.|||++|.+|++|+++|||+|+|... +..+|.|+|.|+.+++.+|+.+|.+++.+.....
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~-----~~~~r~v~I~G~~~~v~~A~~~I~~~i~e~~~~~ 77 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-----NCPERIITLAGPTNAIFKAFAMIIDKLEEDISSS 77 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC-----TTTEEEEEEEEEHHHHHHHHHHHHHHHHHHHTSC
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC-----CCCceEEEEEeCHHHHHHHHHHHHHHHHhhcccc
Confidence 35788999999999999999999999999999999999873 3468999999999999999999999887642211
Q ss_pred CCcCCCccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCceEEEEEeccCcccceeccCCchH
Q 019747 200 QTMTVPYTYAGVFFSGFHGMPYGAVPPPVPAVPHNTAAHYGPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNI 279 (336)
Q Consensus 200 ~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~vp~~~vg~IIGk~G~~I 279 (336)
.. .... ......+.++.||.+++|+|||++|++|
T Consensus 78 ~~-------------------~~~~---------------------------~~~~~~~~~i~vp~~~~g~iIGkgG~~I 111 (160)
T 2jzx_A 78 MT-------------------NSTA---------------------------ASRPPVTLRLVVPASQCGSLIGKGGCKI 111 (160)
T ss_dssp CC-------------------SSSC---------------------------CCCCSEEEEEEEEHHHHHHHHCGGGHHH
T ss_pred CC-------------------CCcc---------------------------CCCCCEEEEEEEChhheeeEECCCCHHH
Confidence 00 0000 0112378999999999999999999999
Q ss_pred HHHHhHhCCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHHHh
Q 019747 280 MEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVAY 329 (336)
Q Consensus 280 ~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 329 (336)
++|++.|||+|.+++. ..+++.++.|+|+|++++++.|+.+|.+++.+
T Consensus 112 k~i~~~tga~I~i~~~--~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 112 KEIRESTGAQVQVAGD--MLPNSTERAITIAGIPQSIIECVKQICVVMLE 159 (160)
T ss_dssp HHHHHHHSSEECCCCC--CSTTCCEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCeEEECCC--CCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 9999999999999864 34567799999999999999999999998865
No 11
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.94 E-value=7.8e-26 Score=188.01 Aligned_cols=156 Identities=24% Similarity=0.336 Sum_probs=130.2
Q ss_pred EEEEEEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHHHHhhcccccc
Q 019747 35 TYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQ 114 (336)
Q Consensus 35 ~~~~i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~~~~~~~~~ 114 (336)
++++|+||.+++|.||||+|++|++|+++|||+|++.+.. ..+++.+|.|.|+|+++++.+|+.+|.+.+.+.......
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~-~~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~~~~~~ 80 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDG-SQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQGGFG 80 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCT-TSSSSSCEEEEEEECHHHHHHHHHHHHHHTTCSSSCCCS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCC-CCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhccCCCCC
Confidence 6899999999999999999999999999999999997643 345678999999999999999999999766554211100
Q ss_pred CCC---CCCceeEEEEEecCccceeecCCChHHHHHHHhcCCEEEEeccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHH
Q 019747 115 ADD---VGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLK 191 (336)
Q Consensus 115 ~~~---~~~~~~~~l~ip~~~~g~iIG~~G~~Ik~I~~~tga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~i~~~ 191 (336)
..+ .....+.++.||.+++|+|||++|.+|++|+++|||+|.|.+.. +...++.|+|+|+++++..|+.+|.++
T Consensus 81 ~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~---~~~~~~~v~I~G~~~~v~~A~~~I~~~ 157 (164)
T 2jvz_A 81 DRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD---GTGPEKIAHIMGPPDRCEHAARIINDL 157 (164)
T ss_dssp SCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCC---TTSSEEEEEEESCHHHHHHHHHHHHHH
T ss_pred CccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCC---CCCCcEEEEEEcCHHHHHHHHHHHHHH
Confidence 000 01124578999999999999999999999999999999998742 345689999999999999999999999
Q ss_pred hhc
Q 019747 192 LSE 194 (336)
Q Consensus 192 l~~ 194 (336)
+.+
T Consensus 158 i~~ 160 (164)
T 2jvz_A 158 LQS 160 (164)
T ss_dssp HHH
T ss_pred Hhh
Confidence 865
No 12
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.82 E-value=3.9e-20 Score=149.43 Aligned_cols=138 Identities=20% Similarity=0.227 Sum_probs=108.2
Q ss_pred ceeEEEEEecCccceeecCCChHHHHHHHhcCCEEEEeccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHhhcCcCCCC
Q 019747 121 KTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQ 200 (336)
Q Consensus 121 ~~~~~l~ip~~~~g~iIG~~G~~Ik~I~~~tga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~i~~~l~~~~~~~~ 200 (336)
.++.+|+||.+.+|.+||++|++|+.|++++|+.+....+ ..+..+...++++++.+|..++ .-
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~~------~~~~~i~~~~~p~~v~~~~~~l----~~------ 66 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDE------DTCTFHIYGEDQDAVKKARSFL----EF------ 66 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEET------TTTEEEEEESSHHHHHHHHHHH----CE------
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccCC------CchheeeccCCHHHHHHHHHhh----hc------
Confidence 4678999999999999999999999999999954443331 1334555556789988886532 11
Q ss_pred CcCCCccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCceEEEEEeccCcccceeccCCchHH
Q 019747 201 TMTVPYTYAGVFFSGFHGMPYGAVPPPVPAVPHNTAAHYGPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIM 280 (336)
Q Consensus 201 ~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~vp~~~vg~IIGk~G~~I~ 280 (336)
...++.||.+.+|++|||+|++|+
T Consensus 67 --------------------------------------------------------~e~~v~Vp~~~~g~~IGK~G~nIr 90 (144)
T 2qnd_A 67 --------------------------------------------------------AEDVIQVPRNLVGKVIGKNGKLIQ 90 (144)
T ss_dssp --------------------------------------------------------EEEEEEEEGGGHHHHHCGGGHHHH
T ss_pred --------------------------------------------------------ceEEEEECHHHcCeeECCCCHHHH
Confidence 236889999999999999999999
Q ss_pred HHHhHhCC-eEEEccCCCCCCCCcc--eEEEEEcChHhHHHHHHHHHHHHHhh
Q 019747 281 EISQISGA-RIKVSDRGDFFSGTSE--RKVTISGPQRSIRTAESMIMQKVAYA 330 (336)
Q Consensus 281 ~I~~~sga-~I~i~~~~~~~~~~~~--r~v~I~G~~~~v~~A~~~I~~~i~~~ 330 (336)
.|++.||| +|.|.+..+......+ ..|+|+|++++++.|+.||+++|.+-
T Consensus 91 ~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~Ak~li~~~l~~l 143 (144)
T 2qnd_A 91 EIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDYHLNYL 143 (144)
T ss_dssp HHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 99999997 9999885432211223 46999999999999999999999763
No 13
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.80 E-value=1.9e-19 Score=145.46 Aligned_cols=137 Identities=22% Similarity=0.267 Sum_probs=107.9
Q ss_pred cEEEEEEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHHHHhhccccc
Q 019747 34 PTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAED 113 (336)
Q Consensus 34 ~~~~~i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~~~~~~~~ 113 (336)
.++.+|+||.+.+|++||++|++|++|++++|+.|.... + .+++.+...++++.+.+|..++. .
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~--~----~~~~~i~~~~~p~~v~~~~~~l~-----~----- 66 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLD--E----DTCTFHIYGEDQDAVKKARSFLE-----F----- 66 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEE--T----TTTEEEEEESSHHHHHHHHHHHC-----E-----
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccC--C----CchheeeccCCHHHHHHHHHhhh-----c-----
Confidence 467899999999999999999999999999994443322 1 34555555567898888765321 1
Q ss_pred cCCCCCCceeEEEEEecCccceeecCCChHHHHHHHhcCC-EEEEeccCCCCCCCCc--eEEEEEcCHHHHHHHHHHHHH
Q 019747 114 QADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQA-VIKISRLDHSYYGLND--RLVTLTGTLDEQMRALELILL 190 (336)
Q Consensus 114 ~~~~~~~~~~~~l~ip~~~~g~iIG~~G~~Ik~I~~~tga-~I~i~~~~~~~~~~~~--r~v~I~G~~~~v~~A~~~i~~ 190 (336)
....+.||.+++|.+|||+|.+|+.+++.||+ +|.|.++++.....++ ..|+|+|++++|+.|..+|..
T Consensus 67 --------~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~Ak~li~~ 138 (144)
T 2qnd_A 67 --------AEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDY 138 (144)
T ss_dssp --------EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHHHHHHHH
T ss_pred --------ceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHHHHHHHH
Confidence 13789999999999999999999999999997 9999985443212233 358999999999999999999
Q ss_pred Hhhc
Q 019747 191 KLSE 194 (336)
Q Consensus 191 ~l~~ 194 (336)
++.+
T Consensus 139 ~l~~ 142 (144)
T 2qnd_A 139 HLNY 142 (144)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9875
No 14
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.75 E-value=4.9e-18 Score=145.66 Aligned_cols=145 Identities=22% Similarity=0.229 Sum_probs=111.5
Q ss_pred CCceeEEEEEecCccceeecCCChHHHHHHHhcCCEEEEeccCCCCCCCCceEEEEEcC-----HHHHHHHHHHHHHHhh
Q 019747 119 GTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGT-----LDEQMRALELILLKLS 193 (336)
Q Consensus 119 ~~~~~~~l~ip~~~~g~iIG~~G~~Ik~I~~~tga~I~i~~~~~~~~~~~~r~v~I~G~-----~~~v~~A~~~i~~~l~ 193 (336)
..+....+.||.+.++.|||++|.+|+.|+++|||+|.++. .++.|.|.|+ ++++.+|+++|..+..
T Consensus 31 ~aP~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~--------~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~r 102 (219)
T 2e3u_A 31 FFKQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS--------ETGEVWITSTKETEDPLAVWKARDIVLAIGR 102 (219)
T ss_dssp --CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT--------TTCEEEEEECTTCCSHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc--------CCCEEEEecCCCCCCHHHHHHHHHHHHHHhc
Confidence 34567799999999999999999999999999999999985 2467888876 6999999999999874
Q ss_pred cCcCCCCCcCCCccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCceEEEEEec---------
Q 019747 194 EDTLYSQTMTVPYTYAGVFFSGFHGMPYGAVPPPVPAVPHNTAAHYGPNMGGRKFQNNKDDRTNSLTIGVA--------- 264 (336)
Q Consensus 194 ~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~vp--------- 264 (336)
.... .....+. ........+.++
T Consensus 103 g~~~---e~g~~ll---------------------------------------------~dd~~~e~i~i~~~~v~~~~~ 134 (219)
T 2e3u_A 103 GFSP---ERAFRLL---------------------------------------------NEGEYLEIINLTDIIIGNEKN 134 (219)
T ss_dssp TCCH---HHHGGGG---------------------------------------------STTCEEEEEEGGGCC------
T ss_pred cCCc---cccceec---------------------------------------------cCCccceeEEcccccccCCch
Confidence 3110 0000000 000011123332
Q ss_pred --cCcccceeccCCchHHHHHhHhCCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHHHh
Q 019747 265 --DEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVAY 329 (336)
Q Consensus 265 --~~~vg~IIGk~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 329 (336)
...+|+|||++|++|+.|++.|||+|.|++ +.|+|.|++++++.|+.+|.++|.+
T Consensus 135 ~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~----------~~v~i~G~~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 135 ALPRVRGRIIGRKGRTRQIIEEMSGASVSVYG----------KTVAIIGNPIQIEIAKTAIEKLARG 191 (219)
T ss_dssp CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEET----------TEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhheeECCCchHHHHHHHHhCceEEECC----------eEEEEEeCHHHHHHHHHHHHHHHcC
Confidence 236899999999999999999999999953 5799999999999999999999965
No 15
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.72 E-value=2e-17 Score=141.92 Aligned_cols=142 Identities=17% Similarity=0.121 Sum_probs=109.7
Q ss_pred EEEEEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEEee-----HHHHHHHHHHHHHHHHhhcc
Q 019747 36 YIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGT-----IDEILRAVDLVIDKLLTELH 110 (336)
Q Consensus 36 ~~~i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~G~-----~~~v~~A~~~I~~~i~~~~~ 110 (336)
+.++.||.+.+|.|||++|++|+.|+++|||+|++.. .+..+.|.++ ++.+.+|..+|.+.+... .
T Consensus 35 i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~--------~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~-~ 105 (219)
T 2e3u_A 35 EEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS--------ETGEVWITSTKETEDPLAVWKARDIVLAIGRGF-S 105 (219)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT--------TTCEEEEEECTTCCSHHHHHHHHHHHHHHHTTC-C
T ss_pred EEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc--------CCCEEEEecCCCCCCHHHHHHHHHHHHHHhccC-C
Confidence 5699999999999999999999999999999999963 3466888876 599999999999655211 0
Q ss_pred ccc-cCCCCCCceeEEEEEec-----------CccceeecCCChHHHHHHHhcCCEEEEeccCCCCCCCCceEEEEEcCH
Q 019747 111 AED-QADDVGTKTKLRLIVPN-----------SSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTL 178 (336)
Q Consensus 111 ~~~-~~~~~~~~~~~~l~ip~-----------~~~g~iIG~~G~~Ik~I~~~tga~I~i~~~~~~~~~~~~r~v~I~G~~ 178 (336)
.+. ...-.++.....+.++. ..+|+|||++|.+|+.|+..|||+|.|.. +.|+|.|+.
T Consensus 106 ~e~g~~ll~dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~----------~~v~i~G~~ 175 (219)
T 2e3u_A 106 PERAFRLLNEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYG----------KTVAIIGNP 175 (219)
T ss_dssp HHHHGGGGSTTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEET----------TEEEEEECH
T ss_pred ccccceeccCCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEECC----------eEEEEEeCH
Confidence 000 00000111222233332 26889999999999999999999999974 569999999
Q ss_pred HHHHHHHHHHHHHhhcCc
Q 019747 179 DEQMRALELILLKLSEDT 196 (336)
Q Consensus 179 ~~v~~A~~~i~~~l~~~~ 196 (336)
++++.|+.+|.+++....
T Consensus 176 ~~i~~A~~~i~~li~g~~ 193 (219)
T 2e3u_A 176 IQIEIAKTAIEKLARGSP 193 (219)
T ss_dssp HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 999999999999997643
No 16
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.68 E-value=7.8e-17 Score=115.76 Aligned_cols=73 Identities=34% Similarity=0.772 Sum_probs=67.3
Q ss_pred eEEEEEeccCcccceeccCCchHHHHHhHhCCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHHHh
Q 019747 257 NSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVAY 329 (336)
Q Consensus 257 ~~~~v~vp~~~vg~IIGk~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 329 (336)
.+.++.||.+++|+|||++|++|++|++.|||+|.|++.+++.+++.++.|+|+|++++++.|+.+|.+++.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 6789999999999999999999999999999999999876666777899999999999999999999998765
No 17
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.65 E-value=1.8e-16 Score=116.87 Aligned_cols=77 Identities=34% Similarity=0.731 Sum_probs=70.4
Q ss_pred eEEEEEeccCcccceeccCCchHHHHHhHhCCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHHHhhhhc
Q 019747 257 NSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVAYASDR 333 (336)
Q Consensus 257 ~~~~v~vp~~~vg~IIGk~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~~ 333 (336)
.+.++.||.+++|+|||++|++|++|++.|||+|.|++.+++.+++.++.|+|+|++++++.|+.+|.+++.+...+
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~~ 79 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGV 79 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhccccc
Confidence 67899999999999999999999999999999999998765567778999999999999999999999999886543
No 18
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.64 E-value=8.4e-16 Score=111.86 Aligned_cols=74 Identities=28% Similarity=0.530 Sum_probs=67.3
Q ss_pred CceEEEEEeccCcccceeccCCchHHHHHhHhCCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHHHhhh
Q 019747 255 RTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVAYAS 331 (336)
Q Consensus 255 ~~~~~~v~vp~~~vg~IIGk~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 331 (336)
...+.++.||.+++|+|||++|++|++|+++|||+|.|++. .+++.++.|+|+|++++++.|+.+|.+++.+..
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~---~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~ 78 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQNSVKQYS 78 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT---TSCSSEEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC---CCCCCceEEEEEeCHHHHHHHHHHHHHHHHhcc
Confidence 34889999999999999999999999999999999999863 446678999999999999999999999998754
No 19
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.63 E-value=3.3e-16 Score=112.37 Aligned_cols=72 Identities=36% Similarity=0.622 Sum_probs=66.5
Q ss_pred ceEEEEEeccCcccceeccCCchHHHHHhHhCCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHHHhh
Q 019747 256 TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVAYA 330 (336)
Q Consensus 256 ~~~~~v~vp~~~vg~IIGk~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 330 (336)
..+.++.||.+++|+|||++|++|++|++.|||+|.|.+. .+++.++.|+|+|++++++.|+.+|.+++.++
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~---~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP---VEGSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC---CTTCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC---CCCCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 4788999999999999999999999999999999999873 45678999999999999999999999998764
No 20
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.63 E-value=7.4e-16 Score=110.62 Aligned_cols=74 Identities=35% Similarity=0.627 Sum_probs=67.5
Q ss_pred cEEEEEEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHHHHh
Q 019747 34 PTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLT 107 (336)
Q Consensus 34 ~~~~~i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~~ 107 (336)
.++++|+||.+.+|.|||++|++|++|+++|||+|+|.+..++.+++.++.|.|.|+++++.+|+.+|.+.+.+
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 46899999999999999999999999999999999999876677888999999999999999999999976543
No 21
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.63 E-value=7.9e-16 Score=128.70 Aligned_cols=141 Identities=18% Similarity=0.249 Sum_probs=111.5
Q ss_pred EEEEEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEE-----eeHHHHHHHHHHHHHHHHhhcc
Q 019747 36 YIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMIS-----GTIDEILRAVDLVIDKLLTELH 110 (336)
Q Consensus 36 ~~~i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~-----G~~~~v~~A~~~I~~~i~~~~~ 110 (336)
.++++||.+.+|+|||++|++++.|++++|++|++.. .++.+.|. |++..+.+|..+|.+... .+.
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~--------~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~r-gf~ 75 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT--------ENSMVIVEPEAEGIPPVNLMKAAEVVKAISL-GFP 75 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET--------TTTEEEEEESSTTSCHHHHHHHHHHHHHHHH-TCC
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc--------CCCeEEEEeCCCCCCHHHHHHHHHHHHHHHc-CCC
Confidence 3699999999999999999999999999999999953 46677888 889999999999985443 222
Q ss_pred ccccCCC-CCCceeEEEEEec----------CccceeecCCChHHHHHHHhcCCEEEEeccCCCCCCCCceEEEEEcCHH
Q 019747 111 AEDQADD-VGTKTKLRLIVPN----------SSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLD 179 (336)
Q Consensus 111 ~~~~~~~-~~~~~~~~l~ip~----------~~~g~iIG~~G~~Ik~I~~~tga~I~i~~~~~~~~~~~~r~v~I~G~~~ 179 (336)
.++...- .++.+...+.++. ...|+|||++|.+++.|+..|||+|.|.. ..|.|.|+.+
T Consensus 76 ~e~A~~Ll~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~----------~~v~i~G~~~ 145 (191)
T 1tua_A 76 PEKAFRLLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGE----------YEVAIIGDYE 145 (191)
T ss_dssp HHHHGGGGSTTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECS----------SEEEEEEEHH
T ss_pred HHHhhhcccCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcC----------CEEEEEeChH
Confidence 1111100 1122333344442 35799999999999999999999999975 4799999999
Q ss_pred HHHHHHHHHHHHhhcC
Q 019747 180 EQMRALELILLKLSED 195 (336)
Q Consensus 180 ~v~~A~~~i~~~l~~~ 195 (336)
+++.|+..|..++...
T Consensus 146 ~i~~Ar~~i~~li~g~ 161 (191)
T 1tua_A 146 RAMAAKQAIEMLAEGR 161 (191)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999999754
No 22
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.63 E-value=5.8e-16 Score=112.76 Aligned_cols=73 Identities=36% Similarity=0.597 Sum_probs=65.8
Q ss_pred CceEEEEEeccCcccceeccCCchHHHHHhHhCCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHHHhh
Q 019747 255 RTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVAYA 330 (336)
Q Consensus 255 ~~~~~~v~vp~~~vg~IIGk~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 330 (336)
...+.++.||.+++|.|||++|++|++|+++|||+|.|.+. .+++.++.|+|+|++++++.|+.+|.+++.+.
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~---~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP---VEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC---CTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC---CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 34889999999999999999999999999999999999874 35577999999999999999999999998876
No 23
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.63 E-value=9.3e-16 Score=128.25 Aligned_cols=140 Identities=18% Similarity=0.246 Sum_probs=112.5
Q ss_pred eEEEEEecCccceeecCCChHHHHHHHhcCCEEEEeccCCCCCCCCceEEEEE-----cCHHHHHHHHHHHHHHhhcCcC
Q 019747 123 KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLT-----GTLDEQMRALELILLKLSEDTL 197 (336)
Q Consensus 123 ~~~l~ip~~~~g~iIG~~G~~Ik~I~~~tga~I~i~~~~~~~~~~~~r~v~I~-----G~~~~v~~A~~~i~~~l~~~~~ 197 (336)
..++.||.+.++.|||++|++++.|++.+|++|.++. .++.++|. |++.++.+|.++|.++......
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~--------~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~ 76 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT--------ENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPP 76 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET--------TTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCH
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc--------CCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCH
Confidence 4689999999999999999999999999999999986 46678888 9999999999999998765321
Q ss_pred CCC-CcCCCccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCceEEEEEec----------cC
Q 019747 198 YSQ-TMTVPYTYAGVFFSGFHGMPYGAVPPPVPAVPHNTAAHYGPNMGGRKFQNNKDDRTNSLTIGVA----------DE 266 (336)
Q Consensus 198 ~~~-~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~vp----------~~ 266 (336)
... .+. ........+.++ ..
T Consensus 77 e~A~~Ll-------------------------------------------------~Dd~~~e~i~i~~~~~~~~~~~~r 107 (191)
T 1tua_A 77 EKAFRLL-------------------------------------------------EEDQILVVVDLKQVVGDSQNHLKR 107 (191)
T ss_dssp HHHGGGG-------------------------------------------------STTEEEEEEETHHHHTTCHHHHHH
T ss_pred HHhhhcc-------------------------------------------------cCcceeEEEEcccccccCchhHHH
Confidence 000 000 001122233343 24
Q ss_pred cccceeccCCchHHHHHhHhCCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHHHh
Q 019747 267 HIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVAY 329 (336)
Q Consensus 267 ~vg~IIGk~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 329 (336)
..|+|||++|.+|+.|+..|||+|.|++ ..|.|.|++++++.|+..|.++|..
T Consensus 108 ~~GrIIGk~G~tik~iE~~Tg~~I~v~~----------~~v~i~G~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 108 IKGRIIGEGGRARRTIEEMTDTYINVGE----------YEVAIIGDYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp HHHHHHCGGGHHHHHHHHHHTCEEEECS----------SEEEEEEEHHHHHHHHHHHHHHHTT
T ss_pred HhhheeCCCccHHHHHHHHHCceEEEcC----------CEEEEEeChHHHHHHHHHHHHHHcC
Confidence 6899999999999999999999999953 4899999999999999999999865
No 24
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.62 E-value=7.5e-16 Score=109.43 Aligned_cols=71 Identities=34% Similarity=0.628 Sum_probs=65.4
Q ss_pred CCcEEEEEEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHHHHh
Q 019747 32 EKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLT 107 (336)
Q Consensus 32 ~~~~~~~i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~~ 107 (336)
...++++|+||.+.+|.||||+|++|++|+++|||+|++++. ++++|++.|.|+++++.+|+.+|.++|.+
T Consensus 2 ~~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-----~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-----NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-----CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred CceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-----CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 356899999999999999999999999999999999999864 36799999999999999999999987765
No 25
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.62 E-value=7.7e-16 Score=109.37 Aligned_cols=69 Identities=29% Similarity=0.540 Sum_probs=64.4
Q ss_pred ceEEEEEeccCcccceeccCCchHHHHHhHhCCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHHHh
Q 019747 256 TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVAY 329 (336)
Q Consensus 256 ~~~~~v~vp~~~vg~IIGk~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 329 (336)
..+.++.||.+++|.|||++|++|++|+++|||+|.|++. +..+|+|+|+|++++++.|+.+|.++|++
T Consensus 4 ~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-----~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-----NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-----CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-----CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 3789999999999999999999999999999999999875 35689999999999999999999999976
No 26
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.61 E-value=9.1e-16 Score=113.43 Aligned_cols=75 Identities=28% Similarity=0.523 Sum_probs=68.0
Q ss_pred CCceEEEEEeccCcccceeccCCchHHHHHhHhCCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHHHhhh
Q 019747 254 DRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVAYAS 331 (336)
Q Consensus 254 ~~~~~~~v~vp~~~vg~IIGk~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 331 (336)
....+.++.||.+++|+|||++|++|++|+++|||+|+|++. .+++.++.|+|+|++++++.|+.+|.+++.+.+
T Consensus 11 ~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~---~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~~ 85 (89)
T 1j5k_A 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQNSVKQYS 85 (89)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC---CSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC---CCCCCccEEEEEcCHHHHHHHHHHHHHHHHhhh
Confidence 455889999999999999999999999999999999999863 456779999999999999999999999998754
No 27
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.61 E-value=2.3e-15 Score=111.92 Aligned_cols=74 Identities=30% Similarity=0.540 Sum_probs=67.2
Q ss_pred ceEEEEEeccCcccceeccCCchHHHHHhHhCCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHHHhhhh
Q 019747 256 TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVAYASD 332 (336)
Q Consensus 256 ~~~~~v~vp~~~vg~IIGk~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~ 332 (336)
..+.+|.||.+++|+|||++|++|++|+++|||+|.|.+.. ++..++.|+|+|++++++.|+.+|.+++++...
T Consensus 14 ~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~---~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~~~ 87 (92)
T 1x4n_A 14 VMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS---GGLPERSCMLTGTPESVQSAKRLLDQIVEKGRS 87 (92)
T ss_dssp CEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC---TTCSEEEEEEEECHHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC---CCCCccEEEEEeCHHHHHHHHHHHHHHHHhccc
Confidence 47899999999999999999999999999999999998752 346789999999999999999999999987643
No 28
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=2.6e-15 Score=114.78 Aligned_cols=74 Identities=26% Similarity=0.425 Sum_probs=66.5
Q ss_pred eEEEEEeccCcccceeccCCchHHHHHhHhCCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHHHhh
Q 019747 257 NSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVAYA 330 (336)
Q Consensus 257 ~~~~v~vp~~~vg~IIGk~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 330 (336)
.+.+|.||.+++|+||||+|++|++|+++|||+|+|.+..++..+..+++|+|+|++++|+.|+.+|.++|.+.
T Consensus 7 ~~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 7 GEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CCEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred CeEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 46899999999999999999999999999999999998654444567899999999999999999999998764
No 29
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.58 E-value=2.5e-15 Score=110.68 Aligned_cols=75 Identities=36% Similarity=0.632 Sum_probs=69.0
Q ss_pred cEEEEEEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHHHHhh
Q 019747 34 PTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108 (336)
Q Consensus 34 ~~~~~i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~~~ 108 (336)
.++++|+||.+.+|.|||++|++|++|+++|||+|+|.+..++.|++.++.|.|.|+++++..|+.+|.+.+.+.
T Consensus 2 k~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 2 KELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYE 76 (87)
T ss_dssp CSEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 467899999999999999999999999999999999998766678889999999999999999999999877654
No 30
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=2.8e-15 Score=108.72 Aligned_cols=69 Identities=22% Similarity=0.341 Sum_probs=62.5
Q ss_pred CceEEEEEeccCcccceeccCCchHHHHHhHhCCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHHHh
Q 019747 255 RTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVAY 329 (336)
Q Consensus 255 ~~~~~~v~vp~~~vg~IIGk~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 329 (336)
...+.+|.||.+++|+||||+|++||+|+++|||+|+|++.+ +++.|+|+|++++++.|+.+|.+++..
T Consensus 8 ~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~------~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 8 GQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD------KEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS------SCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCC------CCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 448899999999999999999999999999999999998642 368999999999999999999997654
No 31
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.57 E-value=1.4e-14 Score=105.39 Aligned_cols=74 Identities=34% Similarity=0.544 Sum_probs=66.6
Q ss_pred CCcEEEEEEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHHHHhh
Q 019747 32 EKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108 (336)
Q Consensus 32 ~~~~~~~i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~~~ 108 (336)
...++++|+||.+++|.||||+|++|++|+++|||+|++++. .+++.+|.|.|+|+++++.+|+.+|.+.+.+.
T Consensus 4 g~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~---~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 4 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT---TSCSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC---CCCCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 356899999999999999999999999999999999999763 35678999999999999999999999776653
No 32
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.56 E-value=4.5e-15 Score=106.39 Aligned_cols=73 Identities=33% Similarity=0.540 Sum_probs=66.6
Q ss_pred CcEEEEEEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHHHHhh
Q 019747 33 KPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108 (336)
Q Consensus 33 ~~~~~~i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~~~ 108 (336)
..++++|+||.+++|.|||++|++|++|+++|||+|++.+. .+++.++.|.|.|+++++.+|+.+|.+.+.++
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~---~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP---VEGSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC---CTTCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC---CCCCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 56899999999999999999999999999999999999863 46788999999999999999999999876553
No 33
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.56 E-value=8.8e-15 Score=109.21 Aligned_cols=75 Identities=17% Similarity=0.399 Sum_probs=66.7
Q ss_pred CceEEEEEeccCcccceeccCCchHHHHHhHhCCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHHHhh
Q 019747 255 RTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVAYA 330 (336)
Q Consensus 255 ~~~~~~v~vp~~~vg~IIGk~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 330 (336)
...+.+|.||.+++|+||||+|++|++|+++|||+|.|.++..+. ...+|.|+|+|++++++.|+.+|.+++.+.
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~-~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 13 GNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN-TGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS-SCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC-CCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 348899999999999999999999999999999999999865322 346899999999999999999999998764
No 34
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.56 E-value=6.9e-15 Score=107.03 Aligned_cols=75 Identities=29% Similarity=0.496 Sum_probs=66.4
Q ss_pred CCCcEEEEEEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHHHHhh
Q 019747 31 TEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108 (336)
Q Consensus 31 ~~~~~~~~i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~~~ 108 (336)
....++++|+||.+++|.||||+|++|++|+++|||+|+|.+. .++..++.|.|+|+++++.+|+.+|.+.+.++
T Consensus 2 ~g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~---~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 2 LGSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP---VEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp CTTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC---CTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CCCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC---CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 3467899999999999999999999999999999999999863 36678999999999999999999999776554
No 35
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.55 E-value=1.5e-14 Score=105.90 Aligned_cols=72 Identities=19% Similarity=0.410 Sum_probs=64.8
Q ss_pred ceEEEEEeccCcccceeccCCchHHHHHhHhCCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHHH
Q 019747 256 TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVA 328 (336)
Q Consensus 256 ~~~~~v~vp~~~vg~IIGk~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~ 328 (336)
..+.+|.||.+++|.|||++|++|++|+++|||+|.|.+++. .+.+.+|.|+|+|++++++.|+.+|.+++.
T Consensus 13 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~-~~~~~er~v~I~G~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 13 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGS-QNTNVDKPLRIIGDPYKVQQACEMVMDILR 84 (85)
T ss_dssp SEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSC-SSTTSCEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCC-CCCCCceEEEEEeCHHHHHHHHHHHHHHhc
Confidence 377899999999999999999999999999999999998643 234578999999999999999999999875
No 36
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.54 E-value=2.3e-14 Score=106.46 Aligned_cols=74 Identities=26% Similarity=0.441 Sum_probs=66.8
Q ss_pred CCcEEEEEEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHHHHhh
Q 019747 32 EKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108 (336)
Q Consensus 32 ~~~~~~~i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~~~ 108 (336)
...++++|+||.+++|.||||+|++|++|+++|||+|+|.+.. ++..+|.|.|+|+.+++.+|+.+|.+.+.+.
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~---~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS---GGLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC---TTCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC---CCCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 3579999999999999999999999999999999999998643 4578999999999999999999999776654
No 37
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.54 E-value=3e-14 Score=108.33 Aligned_cols=75 Identities=28% Similarity=0.463 Sum_probs=66.1
Q ss_pred ceEEEEEeccCcccceeccCCchHHHHHhHhCCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHHHhhh
Q 019747 256 TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVAYAS 331 (336)
Q Consensus 256 ~~~~~v~vp~~~vg~IIGk~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 331 (336)
..+.+|.||.+++|+|||++|++|++|+++|||+|.|.+..+. ....++.|+|+|++++++.|+.+|.+++.+..
T Consensus 14 p~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~-~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~~ 88 (104)
T 1we8_A 14 PVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEG-TLLLSRLIKISGTQKEVAAAKHLILEKVSEDE 88 (104)
T ss_dssp EEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCC-SSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCC-CCCCcceEEEEcCHHHHHHHHHHHHHHHhhCh
Confidence 4788999999999999999999999999999999999875421 12358999999999999999999999997654
No 38
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=1.4e-14 Score=110.06 Aligned_cols=73 Identities=23% Similarity=0.399 Sum_probs=64.7
Q ss_pred eEEEEEeccCcccceeccCCchHHHHHhHhCCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHHHhhhh
Q 019747 257 NSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVAYASD 332 (336)
Q Consensus 257 ~~~~v~vp~~~vg~IIGk~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~ 332 (336)
.+.+|.||.+++++||||+|++|++|+++|||+|+|.++. ++..+|.|+|+|+++++++|+.+|.+++.+...
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~---~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~~ 83 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD---GTGPEKIAHIMGPPDRCEHAARIINDLLQSLRS 83 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC---SSSSEEEEEEESSHHHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC---CCCceeEEEEEeCHHHHHHHHHHHHHHHhcccc
Confidence 5789999999999999999999999999999999998742 345689999999999999999999999887543
No 39
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.53 E-value=1.4e-14 Score=106.96 Aligned_cols=77 Identities=34% Similarity=0.529 Sum_probs=68.0
Q ss_pred CCCCCcEEEEEEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHHHHhh
Q 019747 29 DPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108 (336)
Q Consensus 29 ~~~~~~~~~~i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~~~ 108 (336)
+.....++++|+||.+++|.||||+|++|++|+++|||+|+|.+. .+++.++.|.|+|+++++.+|+.+|.+.+.+.
T Consensus 8 ~~~~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~---~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 8 DLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp --CCCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC---CSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC---CCCCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 345668999999999999999999999999999999999999753 35678999999999999999999999777654
No 40
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.51 E-value=6.7e-14 Score=104.32 Aligned_cols=74 Identities=16% Similarity=0.203 Sum_probs=66.2
Q ss_pred CCceEEEEEeccCcccceeccCCchHHHHHhHhCCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHHHhhh
Q 019747 254 DRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVAYAS 331 (336)
Q Consensus 254 ~~~~~~~v~vp~~~vg~IIGk~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 331 (336)
...++..+.||.+++|.|||++|++|++|+++|||+|+|+++++ ..++.|+|+|++++++.|+.+|..++++..
T Consensus 14 ~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~----~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~ 87 (95)
T 2ctm_A 14 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA----PDPNCVTVTGLPENVEEAIDHILNLEEEYL 87 (95)
T ss_dssp TTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC----SCTTEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred cccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCC----CCCcEEEEEcCHHHHHHHHHHHHHHHHHHH
Confidence 44588999999999999999999999999999999999987542 347899999999999999999999987754
No 41
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=3.4e-14 Score=108.54 Aligned_cols=73 Identities=25% Similarity=0.408 Sum_probs=64.8
Q ss_pred EEEEEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHHHHhh
Q 019747 36 YIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108 (336)
Q Consensus 36 ~~~i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~~~ 108 (336)
+++|+||.+++|.||||+|++||+|+++|||+|+|.+..++..+..++.|+|+|+.+++.+|+.+|.+.+.+.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 6899999999999999999999999999999999987654334457899999999999999999999766554
No 42
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.49 E-value=7.5e-14 Score=104.54 Aligned_cols=75 Identities=21% Similarity=0.348 Sum_probs=66.5
Q ss_pred ceEEEEEeccCcccceeccCCchHHHHHhHhCCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHHHhhhh
Q 019747 256 TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVAYASD 332 (336)
Q Consensus 256 ~~~~~v~vp~~~vg~IIGk~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~ 332 (336)
..+..|.||.++++.|||++|++|++|+++|||+|.|+++++ ++..++.|+|+|++++++.|+.+|..++....+
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~--~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e~e~ 90 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD--GNQPQDQITITGYEKNTEAARDAILRIVGELEQ 90 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT--CSSCSSEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC--CCCCccEEEEEeCHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999999988653 223679999999999999999999999876543
No 43
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.49 E-value=1.6e-13 Score=100.39 Aligned_cols=72 Identities=29% Similarity=0.447 Sum_probs=64.4
Q ss_pred CcEEEEEEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHHH
Q 019747 33 KPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKL 105 (336)
Q Consensus 33 ~~~~~~i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i 105 (336)
...+.+|.||.+++|.||||+|++||+|+++|||+|.+.+.. ..+...+|.|.|+|+++++.+|+.+|.+.+
T Consensus 12 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~-~~~~~~er~v~I~G~~~~v~~A~~~I~~i~ 83 (85)
T 2opv_A 12 NGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDG-SQNTNVDKPLRIIGDPYKVQQACEMVMDIL 83 (85)
T ss_dssp SSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSS-CSSTTSCEEEEEEECHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCC-CCCCCCceEEEEEeCHHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999999998743 235578999999999999999999998654
No 44
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.49 E-value=3.1e-14 Score=100.39 Aligned_cols=67 Identities=13% Similarity=0.332 Sum_probs=60.8
Q ss_pred ceEEEEEeccCcccceeccCCchHHHHHhHhCCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHH
Q 019747 256 TNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKV 327 (336)
Q Consensus 256 ~~~~~v~vp~~~vg~IIGk~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i 327 (336)
..+..+.||.+++|.|||++|++|++|+++|||+|.|++++ ..++.|+|+|++++++.|+.+|.+++
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g-----~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-----EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-----SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC-----CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 37789999999999999999999999999999999998754 35789999999999999999998753
No 45
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.49 E-value=6.6e-14 Score=104.42 Aligned_cols=77 Identities=22% Similarity=0.390 Sum_probs=67.4
Q ss_pred CCCCcEEEEEEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHHHHh
Q 019747 30 PTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLT 107 (336)
Q Consensus 30 ~~~~~~~~~i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~~ 107 (336)
.....++++|+||.+++|.||||+|++||+|+++|||+|+|.+.... ....+|.|.|.|+++++.+|+.+|.+.+.+
T Consensus 10 ~~p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~-~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 10 DGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQ-NTGADKPLRITGDPYKVQQAKEMVLELIRD 86 (94)
T ss_dssp CCCCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCC-SSCSCEEEEEEECTTTHHHHHHHHHHHHCC
T ss_pred CCCCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCC-CCCCceEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 35678999999999999999999999999999999999999875432 234789999999999999999999976654
No 46
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.49 E-value=6.1e-14 Score=104.56 Aligned_cols=75 Identities=20% Similarity=0.434 Sum_probs=66.8
Q ss_pred CCceEEEEEeccCcccceeccCCchHHHHHhHhCCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHHHhhhhc
Q 019747 254 DRTNSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVAYASDR 333 (336)
Q Consensus 254 ~~~~~~~v~vp~~~vg~IIGk~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~~ 333 (336)
..+.+.+|.||.+++|+|||++|++|++|+++|||+|.|++.+ ..++.|+|+|++++++.|+.+|.+++.+....
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-----~~~~~V~I~G~~e~v~~A~~~I~~i~~~~~~~ 88 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-----DPSNQIKITGTKEGIEKARHEVLLISAEQDKR 88 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-----SSCCEEEEEECHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-----CCCCeEEEEECHHHHHHHHHHHHHHhhccccc
Confidence 4568899999999999999999999999999999999997642 24589999999999999999999999876654
No 47
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=3.2e-14 Score=103.10 Aligned_cols=71 Identities=20% Similarity=0.308 Sum_probs=63.3
Q ss_pred CCCcEEEEEEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHHHHh
Q 019747 31 TEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLT 107 (336)
Q Consensus 31 ~~~~~~~~i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~~ 107 (336)
....++++|.||.+++|+||||+|++||+|+++|||+|++++.+ .++++.|+|+++++.+|+.+|.+.+..
T Consensus 6 ~~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~------~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 6 SGGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD------KEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp SCCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS------SCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CCCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCC------CCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 34678999999999999999999999999999999999998533 368999999999999999999975443
No 48
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.46 E-value=4e-13 Score=102.13 Aligned_cols=75 Identities=32% Similarity=0.509 Sum_probs=65.2
Q ss_pred CcEEEEEEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHHHHhh
Q 019747 33 KPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108 (336)
Q Consensus 33 ~~~~~~i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~~~ 108 (336)
-.++++|+||.+++|.||||+|++|++|+++|||+|+|.+..+. ....++.|.|.|+.+++.+|+.+|.+.+.+.
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~-~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEG-TLLLSRLIKISGTQKEVAAAKHLILEKVSED 87 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCC-SSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCC-CCCCcceEEEEcCHHHHHHHHHHHHHHHhhC
Confidence 45789999999999999999999999999999999999865421 1236899999999999999999999877654
No 49
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=1.3e-13 Score=104.70 Aligned_cols=71 Identities=28% Similarity=0.391 Sum_probs=63.3
Q ss_pred EEEEEEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHHHHhh
Q 019747 35 TYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108 (336)
Q Consensus 35 ~~~~i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~~~ 108 (336)
.+++|+||.++++.||||+|++||+|+++|+|+|+|.++. +...+|.|+|+|+++++.+|+.+|.+.+.+.
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~---~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD---GTGPEKIAHIMGPPDRCEHAARIINDLLQSL 81 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC---SSSSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC---CCCceeEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 3689999999999999999999999999999999998643 3467899999999999999999999776654
No 50
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.43 E-value=6.3e-15 Score=111.26 Aligned_cols=69 Identities=23% Similarity=0.421 Sum_probs=62.3
Q ss_pred eEEEEEeccCcccceeccCCchHHHHHhH-hCCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHHHhhhhc
Q 019747 257 NSLTIGVADEHIGFVVGRGGRNIMEISQI-SGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVAYASDR 333 (336)
Q Consensus 257 ~~~~v~vp~~~vg~IIGk~G~~I~~I~~~-sga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~~ 333 (336)
++..|.||.++|++|||++|++|++|+++ ++++|.+++ .++.|+|+|++++|++|+.+|..++++..++
T Consensus 27 ~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~--------~~~~ItI~G~~~~V~~a~~~I~~~v~el~~~ 96 (102)
T 2ctf_A 27 TVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE--------GEDKITLEGPTEDVSVAQEQIEGMVKDLINR 96 (102)
T ss_dssp EEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS--------SSCEEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC--------CCCEEEEECCHHHHHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999999997 599999975 3579999999999999999999999876543
No 51
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.42 E-value=3.8e-13 Score=123.27 Aligned_cols=144 Identities=12% Similarity=0.151 Sum_probs=104.8
Q ss_pred CCceeEEEEEecCccceeecCCC--hHHHHHHHhcCCEEEEeccC--CCCCCCCceEEEEEcCHHHHHHHHHHHHHHhhc
Q 019747 119 GTKTKLRLIVPNSSCGSIIGKAG--ATIKSFMDDSQAVIKISRLD--HSYYGLNDRLVTLTGTLDEQMRALELILLKLSE 194 (336)
Q Consensus 119 ~~~~~~~l~ip~~~~g~iIG~~G--~~Ik~I~~~tga~I~i~~~~--~~~~~~~~r~v~I~G~~~~v~~A~~~i~~~l~~ 194 (336)
.+.++..+.||..+++.|||++| ++|++|+++|||+|+|+..+ ...+......|+|+|.+++|++|+.+|.+++-
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l~P- 105 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRNCH- 105 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHSCE-
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhcCC-
Confidence 56799999999999999999999 99999999999999998643 11223455789999999999999999988531
Q ss_pred CcCCCCCcCCCccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCceEEEEEeccCcccceecc
Q 019747 195 DTLYSQTMTVPYTYAGVFFSGFHGMPYGAVPPPVPAVPHNTAAHYGPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGR 274 (336)
Q Consensus 195 ~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~vp~~~vg~IIGk 274 (336)
.+..+.+|...++. ..
T Consensus 106 --------------------------------------------------------------l~i~~elp~~~i~~--~~ 121 (376)
T 3n89_A 106 --------------------------------------------------------------FTVFMALSKMKMPL--HE 121 (376)
T ss_dssp --------------------------------------------------------------EEEEEECTTCSSCH--HH
T ss_pred --------------------------------------------------------------ceEEEEccccccCc--ch
Confidence 44566666543332 11
Q ss_pred CCchHHHHHhHhCCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHHHh
Q 019747 275 GGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVAY 329 (336)
Q Consensus 275 ~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 329 (336)
.+..|.+ ++..+++|.++...+ ..+.....|+|+|++.+++.|+..+.+++..
T Consensus 122 l~~~I~q-q~~y~V~I~Fp~~~~-~~~~~sd~V~IrG~~~nv~~akeA~~~Ll~~ 174 (376)
T 3n89_A 122 LQAHVRQ-NPIQNVEMSFVDAPE-KNGIVTTYLRITAREKNQHELIEAAKRLNEI 174 (376)
T ss_dssp HHHHHHH-CCCTTCEEEEEEEC------CEEEEEEEEEGGGHHHHHHHHHHHHHH
T ss_pred hhhhhcc-ceeCceEEEeCCccc-ccCCCCCEEEEEcChhhHHHHHHHHHHHHHH
Confidence 1234444 567899998865321 1112367899999999888877776666654
No 52
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.42 E-value=3.1e-13 Score=100.71 Aligned_cols=74 Identities=22% Similarity=0.302 Sum_probs=64.8
Q ss_pred CCCCcEEEEEEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHHHHhh
Q 019747 30 PTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108 (336)
Q Consensus 30 ~~~~~~~~~i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~~~ 108 (336)
..+..++.+|.||.+++|.|||++|++|++|+++|||+|+|++.+ ..++.|.|+|+.+++.+|+.+|.+.+.+.
T Consensus 12 ~l~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-----~~~~~V~I~G~~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 12 RLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-----DPSNQIKITGTKEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp CCCSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-----SSCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred HhCCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-----CCCCeEEEEECHHHHHHHHHHHHHHhhcc
Confidence 345679999999999999999999999999999999999997643 34678999999999999999999665544
No 53
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.41 E-value=3.7e-13 Score=94.85 Aligned_cols=66 Identities=18% Similarity=0.389 Sum_probs=60.4
Q ss_pred CcEEEEEEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHH
Q 019747 33 KPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVID 103 (336)
Q Consensus 33 ~~~~~~i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~ 103 (336)
...+.+|.||.+++|.|||++|++|++|+++|||+|+|+++. ..++.|.|+|..+++.+|+.+|.+
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g-----~~~~~V~I~G~~~~v~~A~~~I~~ 68 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-----EKSNLIRIEGDPQGVQQAKRELLE 68 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-----SSSEEEEEEESSHHHHHHHHHHHH
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC-----CcccEEEEEcCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999998744 467899999999999999999984
No 54
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.41 E-value=4.2e-13 Score=100.43 Aligned_cols=76 Identities=16% Similarity=0.222 Sum_probs=65.6
Q ss_pred CCCCcEEEEEEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHHHHh
Q 019747 30 PTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLT 107 (336)
Q Consensus 30 ~~~~~~~~~i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~~ 107 (336)
.....++++|.||.++++.|||++|++|++|+++|||+|+|++..+ ++..++.|.|+|..+++.+|+.+|.+.+.+
T Consensus 12 ~~~~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~--~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 12 RALRSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD--GNQPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp HHHTTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT--CSSCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred hhccceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC--CCCCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 3345689999999999999999999999999999999999987543 334679999999999999999999955433
No 55
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.40 E-value=4.2e-13 Score=100.00 Aligned_cols=75 Identities=13% Similarity=0.230 Sum_probs=65.4
Q ss_pred CCCCCcEEEEEEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHHHHh
Q 019747 29 DPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLT 107 (336)
Q Consensus 29 ~~~~~~~~~~i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~~ 107 (336)
.+.+..++.+|.||.++++.|||++|++|++|+++|||+|+|++..+ ..++.|.|+|..+++.+|+.+|.+.+.+
T Consensus 11 ~~l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~----~~~~~V~I~G~~e~v~~A~~~I~~i~~e 85 (95)
T 2ctm_A 11 GELEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA----PDPNCVTVTGLPENVEEAIDHILNLEEE 85 (95)
T ss_dssp CCTTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC----SCTTEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred HhhcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCC----CCCcEEEEEcCHHHHHHHHHHHHHHHHH
Confidence 34577899999999999999999999999999999999999986532 3468999999999999999999965443
No 56
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.40 E-value=3.7e-13 Score=102.04 Aligned_cols=70 Identities=16% Similarity=0.266 Sum_probs=63.5
Q ss_pred eEEEEEeccCcccceeccCCchHHHHHhHhCCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHHHhhh
Q 019747 257 NSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVAYAS 331 (336)
Q Consensus 257 ~~~~v~vp~~~vg~IIGk~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 331 (336)
.+..|.||.+++|+|||++|++|++|+++|||+|.|++.+ ...+.|+|+|++++++.|+.+|.+++++..
T Consensus 17 ~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g-----~~~~~V~I~G~~e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 17 VTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE-----LQSDIIAITGLAANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp EEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT-----TTCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC-----CCcceEEEEcCHHHHHHHHHHHHHHHhhHH
Confidence 7889999999999999999999999999999999998754 245799999999999999999999887643
No 57
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.31 E-value=2.5e-12 Score=95.57 Aligned_cols=75 Identities=17% Similarity=0.310 Sum_probs=66.4
Q ss_pred CCCceEEEEEeccCcccceeccCCchHHHHHhHh-CCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHHHhhh
Q 019747 253 DDRTNSLTIGVADEHIGFVVGRGGRNIMEISQIS-GARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVAYAS 331 (336)
Q Consensus 253 ~~~~~~~~v~vp~~~vg~IIGk~G~~I~~I~~~s-ga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 331 (336)
....++..|.||.++++.|||++|++|++|+++| ||+|.|++.+ +..+.|+|+|+.+++++|+.+|++++.+..
T Consensus 13 ~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g-----~~~~~V~I~G~~~~v~~A~~~I~~iv~e~e 87 (95)
T 2ctj_A 13 LANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEG-----SGSDTVVIRGPSSDVEKAKKQLLHLAEEKQ 87 (95)
T ss_dssp CCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTT-----TTCCEEEEESCHHHHHHHHHHHHHHHHHHS
T ss_pred HhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCC-----CCcceEEEEcCHHHHHHHHHHHHHHHhhhh
Confidence 3456789999999999999999999999999999 9999997643 457799999999999999999999988654
Q ss_pred h
Q 019747 332 D 332 (336)
Q Consensus 332 ~ 332 (336)
.
T Consensus 88 ~ 88 (95)
T 2ctj_A 88 T 88 (95)
T ss_dssp C
T ss_pred h
Confidence 3
No 58
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.30 E-value=3.6e-12 Score=96.52 Aligned_cols=68 Identities=24% Similarity=0.295 Sum_probs=60.8
Q ss_pred EEEEEEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHHHHh
Q 019747 35 TYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLT 107 (336)
Q Consensus 35 ~~~~i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~~ 107 (336)
++..|.||.+++|.|||+||++|++|+++|||+|+|++.. ...+.|.|+|..+++.+|+.+|.+.+.+
T Consensus 17 ~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g-----~~~~~V~I~G~~e~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 17 VTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE-----LQSDIIAITGLAANLDRAKAGLLERVKE 84 (104)
T ss_dssp EEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT-----TTCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC-----CCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 8899999999999999999999999999999999998744 3456899999999999999999965543
No 59
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.26 E-value=1.3e-11 Score=91.79 Aligned_cols=75 Identities=13% Similarity=0.253 Sum_probs=66.5
Q ss_pred CCCCCCcEEEEEEEecCccceeecCCChHHHHHHHHh-CCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHHHH
Q 019747 28 SDPTEKPTYIRFLVSNPLAGAVIGKGGSTINDFQSQS-GARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLL 106 (336)
Q Consensus 28 ~~~~~~~~~~~i~ip~~~vg~iIGk~G~~Ik~I~~~t-g~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~ 106 (336)
....++.++..|.||.++++.|||++|++|++|+++| ||+|+|+++. ...+.|.|.|..+++.+|+.+|.+.+.
T Consensus 10 ~~e~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g-----~~~~~V~I~G~~~~v~~A~~~I~~iv~ 84 (95)
T 2ctj_A 10 QKDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEG-----SGSDTVVIRGPSSDVEKAKKQLLHLAE 84 (95)
T ss_dssp CCCCCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTT-----TTCCEEEEESCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCC-----CCcceEEEEcCHHHHHHHHHHHHHHHh
Confidence 4567888999999999999999999999999999999 9999998643 557789999999999999999996554
Q ss_pred h
Q 019747 107 T 107 (336)
Q Consensus 107 ~ 107 (336)
+
T Consensus 85 e 85 (95)
T 2ctj_A 85 E 85 (95)
T ss_dssp H
T ss_pred h
Confidence 4
No 60
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.23 E-value=3.2e-13 Score=101.85 Aligned_cols=88 Identities=22% Similarity=0.230 Sum_probs=72.4
Q ss_pred EEeeHHHHHHHHHHHHHHHHhhccccccCCCCCCceeEEEEEecCccceeecCCChHHHHHHHhc-CCEEEEeccCCCCC
Q 019747 87 ISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDS-QAVIKISRLDHSYY 165 (336)
Q Consensus 87 I~G~~~~v~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~l~ip~~~~g~iIG~~G~~Ik~I~~~t-ga~I~i~~~~~~~~ 165 (336)
|+|.+++|.+|+.+|.+.+ ....+..+.||..+++.|||++|++|++|++++ +++|+|++
T Consensus 5 i~G~~~~V~~A~~~i~~~~-------------~~~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~------ 65 (102)
T 2ctf_A 5 SSGEPEKLGQALTEVYAKA-------------NSFTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE------ 65 (102)
T ss_dssp CCCCCCCCCCSCCCCCCCC-------------CCCEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS------
T ss_pred cCcCHHHHHHHHHHHHHHh-------------cCeEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC------
Confidence 4566777777766665321 123778999999999999999999999999974 99999986
Q ss_pred CCCceEEEEEcCHHHHHHHHHHHHHHhhcC
Q 019747 166 GLNDRLVTLTGTLDEQMRALELILLKLSED 195 (336)
Q Consensus 166 ~~~~r~v~I~G~~~~v~~A~~~i~~~l~~~ 195 (336)
.++.|+|+|+++.|.+|+..|..++.+.
T Consensus 66 --~~~~ItI~G~~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 66 --GEDKITLEGPTEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp --SSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred --CCCEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999998763
No 61
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.03 E-value=2.8e-10 Score=82.98 Aligned_cols=64 Identities=17% Similarity=0.361 Sum_probs=57.5
Q ss_pred CceEEEEEeccCcccceeccCCchHHHHHhHhCCe-EEEccCCCCCCCCcceEEEEEc-ChHhHHHHHHHHHHH
Q 019747 255 RTNSLTIGVADEHIGFVVGRGGRNIMEISQISGAR-IKVSDRGDFFSGTSERKVTISG-PQRSIRTAESMIMQK 326 (336)
Q Consensus 255 ~~~~~~v~vp~~~vg~IIGk~G~~I~~I~~~sga~-I~i~~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~ 326 (336)
......+.||.+++|.|||++|++|++|+++||++ |.|.+ ++.+|+|.| +.+++++|+.+|...
T Consensus 13 ~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e--------ddG~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 13 AAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE--------DTGTFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET--------TTTEEEEEESSHHHHHHHHHHHSCC
T ss_pred CceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc--------CCCEEEEEECCHHHHHHHHHHHHhh
Confidence 34788999999999999999999999999999998 99964 358999999 899999999999643
No 62
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.81 E-value=1.7e-08 Score=77.71 Aligned_cols=75 Identities=16% Similarity=0.091 Sum_probs=57.5
Q ss_pred eEEEEEeccC-------cccceeccCCchHHHHHhHhCCeEEEccCCCC-------CCCCcceEEEEEc-ChHhHHHHHH
Q 019747 257 NSLTIGVADE-------HIGFVVGRGGRNIMEISQISGARIKVSDRGDF-------FSGTSERKVTISG-PQRSIRTAES 321 (336)
Q Consensus 257 ~~~~v~vp~~-------~vg~IIGk~G~~I~~I~~~sga~I~i~~~~~~-------~~~~~~r~v~I~G-~~~~v~~A~~ 321 (336)
.+.+|.||-+ ++|.|||++|.+||+|+++|||+|.|..++.. ....++-.|.|++ +++++++|+.
T Consensus 12 ~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~ 91 (119)
T 2yqr_A 12 VQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKK 91 (119)
T ss_dssp EEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHH
T ss_pred EEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHH
Confidence 5667777754 78999999999999999999999999754210 0011344677776 7999999999
Q ss_pred HHHHHHHhhh
Q 019747 322 MIMQKVAYAS 331 (336)
Q Consensus 322 ~I~~~i~~~~ 331 (336)
+|.+++....
T Consensus 92 ~Ie~Ll~~v~ 101 (119)
T 2yqr_A 92 LCENLLQTVH 101 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhchH
Confidence 9999987643
No 63
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.77 E-value=1.7e-08 Score=79.28 Aligned_cols=75 Identities=13% Similarity=0.278 Sum_probs=61.6
Q ss_pred CceEEEEEeccC------cccceeccCCchHHHHHhHhCCeEEEccCCCCC-------------CCCcceEEEEEc-ChH
Q 019747 255 RTNSLTIGVADE------HIGFVVGRGGRNIMEISQISGARIKVSDRGDFF-------------SGTSERKVTISG-PQR 314 (336)
Q Consensus 255 ~~~~~~v~vp~~------~vg~IIGk~G~~I~~I~~~sga~I~i~~~~~~~-------------~~~~~r~v~I~G-~~~ 314 (336)
...+.+|.||.+ ++|.|||++|.+||+|+++|||+|.|...+... ...++-.|.|++ +.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 347889999987 889999999999999999999999998743111 112356788888 799
Q ss_pred hHHHHHHHHHHHHHh
Q 019747 315 SIRTAESMIMQKVAY 329 (336)
Q Consensus 315 ~v~~A~~~I~~~i~~ 329 (336)
.++.|+.+|..+|..
T Consensus 85 ~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999865
No 64
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.69 E-value=5.6e-08 Score=76.30 Aligned_cols=76 Identities=14% Similarity=0.298 Sum_probs=58.9
Q ss_pred CcEEEEEEEecC------ccceeecCCChHHHHHHHHhCCeEEEcCCCCCC-------------CCCCceEEEEEe-eHH
Q 019747 33 KPTYIRFLVSNP------LAGAVIGKGGSTINDFQSQSGARIQLSRSHEFF-------------PGTTDRIIMISG-TID 92 (336)
Q Consensus 33 ~~~~~~i~ip~~------~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~-------------~~~~~r~i~I~G-~~~ 92 (336)
..++.+|.||.+ ++|.|||++|.+||+|+++|||+|.+....-.. ....+-.|.|++ +.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 468899999999 788999999999999999999999996522000 012245677777 578
Q ss_pred HHHHHHHHHHHHHHhh
Q 019747 93 EILRAVDLVIDKLLTE 108 (336)
Q Consensus 93 ~v~~A~~~I~~~i~~~ 108 (336)
.+.+|+++|.+.+...
T Consensus 85 ~~~~A~~~I~~ll~~~ 100 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQG 100 (131)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 8999999999766543
No 65
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.68 E-value=1.8e-08 Score=73.35 Aligned_cols=66 Identities=15% Similarity=0.220 Sum_probs=57.7
Q ss_pred CCceeEEEEEecCccceeecCCChHHHHHHHhcCCE-EEEeccCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHh
Q 019747 119 GTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAV-IKISRLDHSYYGLNDRLVTLTG-TLDEQMRALELILLKL 192 (336)
Q Consensus 119 ~~~~~~~l~ip~~~~g~iIG~~G~~Ik~I~~~tga~-I~i~~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~i~~~l 192 (336)
...+...|.||.+.++.+||++|.+|++|+++||++ |.|.. .+..|+|.| +.+++.+|+.+|..+-
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e--------ddG~V~I~g~~~ea~~~A~~~I~~ie 79 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE--------DTGTFRIYGESADAVKKARGFLEFVE 79 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET--------TTTEEEEEESSHHHHHHHHHHHSCCC
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc--------CCCEEEEEECCHHHHHHHHHHHHhhh
Confidence 455888999999999999999999999999999998 99974 347899999 6899999998876643
No 66
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=1.2e-07 Score=72.92 Aligned_cols=75 Identities=23% Similarity=0.209 Sum_probs=55.8
Q ss_pred CcEEEEEEEecC-------ccceeecCCChHHHHHHHHhCCeEEEcCCCCCC--C-----CCCceEEEEE-eeHHHHHHH
Q 019747 33 KPTYIRFLVSNP-------LAGAVIGKGGSTINDFQSQSGARIQLSRSHEFF--P-----GTTDRIIMIS-GTIDEILRA 97 (336)
Q Consensus 33 ~~~~~~i~ip~~-------~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~--~-----~~~~r~i~I~-G~~~~v~~A 97 (336)
..+.-+|.||.+ ++|.|||++|.+||+|+++|||+|.|....... + ...+-.|.|. .+.+.+.+|
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A 89 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAA 89 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHH
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHH
Confidence 468889999986 689999999999999999999999996331000 0 0123346665 468899999
Q ss_pred HHHHHHHHHh
Q 019747 98 VDLVIDKLLT 107 (336)
Q Consensus 98 ~~~I~~~i~~ 107 (336)
+++|.+.+..
T Consensus 90 ~~~Ie~Ll~~ 99 (119)
T 2yqr_A 90 KKLCENLLQT 99 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999865543
No 67
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.32 E-value=7.2e-07 Score=70.31 Aligned_cols=72 Identities=21% Similarity=0.340 Sum_probs=52.9
Q ss_pred EEEEEEEecCc------cceeecCCChHHHHHHHHhCCeEEEcCCCCCC--------CC-------CCceEEEEEee-HH
Q 019747 35 TYIRFLVSNPL------AGAVIGKGGSTINDFQSQSGARIQLSRSHEFF--------PG-------TTDRIIMISGT-ID 92 (336)
Q Consensus 35 ~~~~i~ip~~~------vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~--------~~-------~~~r~i~I~G~-~~ 92 (336)
++-+|.||.+. +|.|||++|.++|+|+++|||+|.|....... .| ...--|.|++. .+
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 67789999876 89999999999999999999999997543110 00 11235778874 32
Q ss_pred -----HHHHHHHHHHHHHH
Q 019747 93 -----EILRAVDLVIDKLL 106 (336)
Q Consensus 93 -----~v~~A~~~I~~~i~ 106 (336)
.+.+|+++|.+.+.
T Consensus 82 ~~~~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLV 100 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHHHHHCC
Confidence 68888888885543
No 68
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.29 E-value=9.4e-07 Score=69.65 Aligned_cols=73 Identities=15% Similarity=0.222 Sum_probs=55.0
Q ss_pred eEEEEEeccC------cccceeccCCchHHHHHhHhCCeEEEccCCCCCC---------------CCcceEEEEEcC-hH
Q 019747 257 NSLTIGVADE------HIGFVVGRGGRNIMEISQISGARIKVSDRGDFFS---------------GTSERKVTISGP-QR 314 (336)
Q Consensus 257 ~~~~v~vp~~------~vg~IIGk~G~~I~~I~~~sga~I~i~~~~~~~~---------------~~~~r~v~I~G~-~~ 314 (336)
.+.+|.||-+ ++|.|||++|.++|+|+++|||+|.|..++...+ ..++=.|.|++. ++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 3567777754 5999999999999999999999999998652110 011237888883 43
Q ss_pred -----hHHHHHHHHHHHHHh
Q 019747 315 -----SIRTAESMIMQKVAY 329 (336)
Q Consensus 315 -----~v~~A~~~I~~~i~~ 329 (336)
.++.|+.+|..+|..
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVP 101 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSC
T ss_pred hhHHHHHHHHHHHHHHHCCC
Confidence 799999999988763
No 69
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=98.28 E-value=1.5e-06 Score=67.09 Aligned_cols=73 Identities=18% Similarity=0.292 Sum_probs=63.6
Q ss_pred eEEEEEeccCcccceeccCCchHHHHHhHhCCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHHHhhhhc
Q 019747 257 NSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVAYASDR 333 (336)
Q Consensus 257 ~~~~v~vp~~~vg~IIGk~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~~ 333 (336)
.-..+.|..+.++.|+|++|+.|+.|+..|.+.|+|..-. .+....|+|.|++..-..|+.+|..+.+.....
T Consensus 56 dPlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~----s~g~tEVtIfG~~~~Q~rak~MI~sLA~~hr~~ 128 (140)
T 3v69_A 56 DPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWG----PERRAEIWIFGPPPFRRDVDRMLTDLAHYCRMK 128 (140)
T ss_dssp SCEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCC----TTSCEEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccC----CCCcEEEEEECCHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888999999999999999999999999999998742 246889999999999999999999888776443
No 70
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.13 E-value=2.8e-06 Score=83.54 Aligned_cols=62 Identities=23% Similarity=0.329 Sum_probs=54.2
Q ss_pred eEEEEEeccCcccceeccCCchHHHHHhHhCCeEEEccCCCCCCCCcceEEEEEcC-hHhHHHHHHHHHHHH
Q 019747 257 NSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGP-QRSIRTAESMIMQKV 327 (336)
Q Consensus 257 ~~~~v~vp~~~vg~IIGk~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~i 327 (336)
....+.||.+++|.|||++|++||+|+++|||+|.|.+ +-.|.|.|+ .+.+++|+.+|.+++
T Consensus 567 ~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d---------~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 567 VVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD---------EETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp EEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS---------SSEEEEEESSHHHHHHHHHHTTC--
T ss_pred eEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC---------CcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 67889999999999999999999999999999999953 578888885 788999999997654
No 71
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.10 E-value=4.3e-06 Score=82.16 Aligned_cols=89 Identities=11% Similarity=0.113 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhhccccccCCCCCCceeEEEEEecCccceeecCCChHHHHHHHhcCCEEEEeccCCCCCCCCceEEEE
Q 019747 95 LRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTL 174 (336)
Q Consensus 95 ~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~l~ip~~~~g~iIG~~G~~Ik~I~~~tga~I~i~~~~~~~~~~~~r~v~I 174 (336)
.+++..|.+.+.+.+...+...+...+....+.||.+.++.|||++|.+||.|+++|||+|.|.. +..|.|
T Consensus 540 ~~g~~~I~~~m~~al~~~~~~~~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d---------~G~V~I 610 (630)
T 3u1k_A 540 SVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD---------EETFSV 610 (630)
T ss_dssp HHHHHHHHHHHHHHCSSCCSSCCTTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS---------SSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC---------CcEEEE
Confidence 34455566666666655444444556778899999999999999999999999999999999974 357889
Q ss_pred EcC-HHHHHHHHHHHHHHh
Q 019747 175 TGT-LDEQMRALELILLKL 192 (336)
Q Consensus 175 ~G~-~~~v~~A~~~i~~~l 192 (336)
.|. .+.+.+|+++|..++
T Consensus 611 ~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 611 FAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp EESSHHHHHHHHHHTTC--
T ss_pred EeCCHHHHHHHHHHHHHHh
Confidence 988 688899998887654
No 72
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.80 E-value=4.1e-06 Score=66.46 Aligned_cols=101 Identities=21% Similarity=0.324 Sum_probs=73.6
Q ss_pred EEEEEEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHHHHhhccccc-
Q 019747 35 TYIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAED- 113 (336)
Q Consensus 35 ~~~~i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~~~~~~~~- 113 (336)
-.+.++|+...+|..||++|++|+.|+++.|-+|.+-..++ + +.. .+...+....
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~------d--------~~~----------fI~naLsPA~V 91 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSS------D--------LER----------IVKNLFPGVKI 91 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCS------S--------HHH----------HHHHHSTTSCE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCC------C--------HHH----------HHHHhcCCceE
Confidence 46889999999999999999999999999999999965432 1 111 1111111110
Q ss_pred ---cCCCCCCceeEEEEEecCccceeecCCChHHHHHHHhcCCEEEEec
Q 019747 114 ---QADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISR 159 (336)
Q Consensus 114 ---~~~~~~~~~~~~l~ip~~~~g~iIG~~G~~Ik~I~~~tga~I~i~~ 159 (336)
.....+......+.||.+..+..||++|.+++-..+-||.++.|..
T Consensus 92 ~~V~i~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~~ 140 (144)
T 2cxc_A 92 ESINVRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVEK 140 (144)
T ss_dssp EEEEEEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEEE
T ss_pred EEEEEeecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCceE
Confidence 0000023467788999999999999999999999999988877753
No 73
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.66 E-value=0.00011 Score=56.68 Aligned_cols=65 Identities=22% Similarity=0.176 Sum_probs=56.9
Q ss_pred EEEEEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHH
Q 019747 36 YIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDK 104 (336)
Q Consensus 36 ~~~i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~ 104 (336)
.+.|.|.+..++.|+|++|+.|+.|+..|++.|++..-+ + +..-.|+|.|++..-.+|+.+|...
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~---s-~g~tEVtIfG~~~~Q~rak~MI~sL 121 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWG---P-ERRAEIWIFGPPPFRRDVDRMLTDL 121 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCC---T-TSCEEEEEESCHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccC---C-CCcEEEEEECCHHHHHHHHHHHHHH
Confidence 367889999999999999999999999999999997643 2 4678899999999999999999843
No 74
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.58 E-value=4.5e-05 Score=75.87 Aligned_cols=65 Identities=29% Similarity=0.426 Sum_probs=11.8
Q ss_pred eEEEEEeccCcccceeccCCchHHHHHhHhCCeEEEccCCCCCCCCcceEEEEEc-ChHhHHHHHHHHHHHHHhh
Q 019747 257 NSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISG-PQRSIRTAESMIMQKVAYA 330 (336)
Q Consensus 257 ~~~~v~vp~~~vg~IIGk~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~i~~~ 330 (336)
....+.||.++++.|||+||++||+|.++||++|.|.+ +-.|.|.+ ..+.++.|+.+|..++...
T Consensus 570 ~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d---------dG~v~I~~~~~~~~~~A~~~i~~i~~~~ 635 (726)
T 4aid_A 570 KIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND---------DGVVKVSASDGAKIKAAIDWIKSITDEA 635 (726)
T ss_dssp C----------------------------------------------------CCSCHHHHHHHHHC--------
T ss_pred eEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC---------CceEEEEeCCHHHHHHHHHHHHHHhhhh
Confidence 45688899999999999999999999999999999953 45667777 5889999999998877543
No 75
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.55 E-value=5.1e-05 Score=75.51 Aligned_cols=91 Identities=14% Similarity=0.199 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhhccccccCCCCCCceeEEEEEecCccceeecCCChHHHHHHHhcCCEEEEeccCCCCCCCCceEEEE
Q 019747 95 LRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTL 174 (336)
Q Consensus 95 ~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~l~ip~~~~g~iIG~~G~~Ik~I~~~tga~I~i~~~~~~~~~~~~r~v~I 174 (336)
.+++..|.+.+.+.+...+...+...+....+.||.+.++.+||++|.+|+.|.++||++|.+.. +..|.|
T Consensus 543 ~~g~~~I~~~m~~al~~~r~~~~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d---------dG~v~I 613 (726)
T 4aid_A 543 KEGRAHILGEMNKAMDAPRADVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND---------DGVVKV 613 (726)
T ss_dssp HHHHHHHHHHHHTTCSSCCSSCCSSCCC----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC---------CceEEE
Confidence 33455566566665554433344455677889999999999999999999999999999999974 345777
Q ss_pred EcC-HHHHHHHHHHHHHHhhc
Q 019747 175 TGT-LDEQMRALELILLKLSE 194 (336)
Q Consensus 175 ~G~-~~~v~~A~~~i~~~l~~ 194 (336)
.+. .+++.+|+..|..++.+
T Consensus 614 ~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 614 SASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp CCSCHHHHHHHHHC-------
T ss_pred EeCCHHHHHHHHHHHHHHhhh
Confidence 776 78899999999888754
No 76
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.43 E-value=7.2e-05 Score=59.26 Aligned_cols=104 Identities=18% Similarity=0.340 Sum_probs=75.3
Q ss_pred eeEEEEEecCccceeecCCChHHHHHHHhcCCEEEEeccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHhhcCcCCCCC
Q 019747 122 TKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSEDTLYSQT 201 (336)
Q Consensus 122 ~~~~l~ip~~~~g~iIG~~G~~Ik~I~~~tga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~i~~~l~~~~~~~~~ 201 (336)
-...+.|+...+|..||++|.+++.|+++.|-+|.+-..++ ++ ...|...|....-..-.
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~--------------d~------~~fI~naLsPA~V~~V~ 95 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSS--------------DL------ERIVKNLFPGVKIESIN 95 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCS--------------SH------HHHHHHHSTTSCEEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCC--------------CH------HHHHHHhcCCceEEEEE
Confidence 57789999999999999999999999999999999876211 11 23344443321000000
Q ss_pred cCCCccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCceEEEEEeccCcccceeccCCchHHH
Q 019747 202 MTVPYTYAGVFFSGFHGMPYGAVPPPVPAVPHNTAAHYGPNMGGRKFQNNKDDRTNSLTIGVADEHIGFVVGRGGRNIME 281 (336)
Q Consensus 202 ~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~vp~~~vg~IIGk~G~~I~~ 281 (336)
. ..........+.||.+..+..|||+|.+++-
T Consensus 96 i------------------------------------------------~~~~~~~~~~V~V~~~q~slAIGk~G~NvrL 127 (144)
T 2cxc_A 96 V------------------------------------------------RERNGVKQVVIKVSEDDKGAAIGKGGKNVKR 127 (144)
T ss_dssp E------------------------------------------------EEETTEEEEEEEECTTTHHHHHCGGGHHHHH
T ss_pred E------------------------------------------------eecCCcEEEEEEEChHHhhhccCCCCHHHHH
Confidence 0 0001235678899999999999999999999
Q ss_pred HHhHhCCeEEEc
Q 019747 282 ISQISGARIKVS 293 (336)
Q Consensus 282 I~~~sga~I~i~ 293 (336)
..+.||.+|.|.
T Consensus 128 a~~Ltg~~idI~ 139 (144)
T 2cxc_A 128 ARLVLSKLFGVE 139 (144)
T ss_dssp HHHHHHHHHCEE
T ss_pred HHHHhCCeeCce
Confidence 999999988774
No 77
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=96.49 E-value=0.0014 Score=56.37 Aligned_cols=97 Identities=22% Similarity=0.225 Sum_probs=66.1
Q ss_pred ccceeecCCChHHHHH-HHHhCCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHHHHhhccccccCCCCCCcee
Q 019747 45 LAGAVIGKGGSTINDF-QSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTK 123 (336)
Q Consensus 45 ~vg~iIGk~G~~Ik~I-~~~tg~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~~~~~~~~~~~~~~~~~~ 123 (336)
-+|..||++|++|+.| ++-.|=+|.+-..++ + +. ..|...|...-... .....+....
T Consensus 127 pvGacIG~~G~rI~~i~~eL~gekIDIi~~s~------d--------p~------~fi~nalsPA~V~~-V~i~~~~~~~ 185 (251)
T 2asb_A 127 AKGACIGPMGQRVRNVMSELSGEKIDIIDYDD------D--------PA------RFVANALSPAKVVS-VSVIDQTARA 185 (251)
T ss_dssp HHHHHHCGGGHHHHHHHHHTTTCEEEEEECCS------S--------HH------HHHHHHTTTSCCSE-EEEEETTTTE
T ss_pred HHHHHhCCCchHHHHHHHHhCCCeEEEEEecC------C--------HH------HHHHhccCCcceEE-EEEEcCCCcE
Confidence 4899999999999999 677789999865432 1 11 11111111110000 0000112357
Q ss_pred EEEEEecCccceeecCCChHHHHHHHhcCCEEEEeccCC
Q 019747 124 LRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDH 162 (336)
Q Consensus 124 ~~l~ip~~~~g~iIG~~G~~Ik~I~~~tga~I~i~~~~~ 162 (336)
..+.||..+.+.-||++|.+++-..+-||.+|.|....+
T Consensus 186 a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 224 (251)
T 2asb_A 186 ARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 224 (251)
T ss_dssp EEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESSC
T ss_pred EEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHHH
Confidence 789999999999999999999999999999999987433
No 78
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=96.22 E-value=0.0083 Score=51.66 Aligned_cols=41 Identities=20% Similarity=0.406 Sum_probs=37.3
Q ss_pred eEEEEEeccCcccceeccCCchHHHHHhHhCCeEEEccCCC
Q 019747 257 NSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGD 297 (336)
Q Consensus 257 ~~~~v~vp~~~vg~IIGk~G~~I~~I~~~sga~I~i~~~~~ 297 (336)
....+.||.+..+.-|||+|+|++--.+.||.+|.|....+
T Consensus 184 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 224 (251)
T 2asb_A 184 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 224 (251)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESSC
T ss_pred cEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHHH
Confidence 46789999999999999999999999999999999987543
No 79
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=96.06 E-value=0.0034 Score=57.16 Aligned_cols=97 Identities=22% Similarity=0.227 Sum_probs=67.4
Q ss_pred CccceeecCCChHHHHHHHHh-CCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHHHHhhccccccCCCCCCce
Q 019747 44 PLAGAVIGKGGSTINDFQSQS-GARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKT 122 (336)
Q Consensus 44 ~~vg~iIGk~G~~Ik~I~~~t-g~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~~~~~~~~~~~~~~~~~ 122 (336)
+-+|..||++|++|+.|.++. |=+|.|-..++ + +. ..|...|...-...-... .+...
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~------d--------p~------~fi~nalsPA~V~~V~~~-~~~~~ 307 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDD------D--------PA------RFVANALSPAKVVSVSVI-DQTAR 307 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCS------S--------HH------HHHHHHTTTSCCSEEEEE-ETTTT
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcCC------C--------HH------HHHHHhcCCcceeEEEEE-cCCCc
Confidence 458999999999999999999 89999865432 1 11 111111111100000000 11245
Q ss_pred eEEEEEecCccceeecCCChHHHHHHHhcCCEEEEeccC
Q 019747 123 KLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLD 161 (336)
Q Consensus 123 ~~~l~ip~~~~g~iIG~~G~~Ik~I~~~tga~I~i~~~~ 161 (336)
...+.||..+.+..||++|.+++-..+-||.+|.|....
T Consensus 308 ~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 346 (366)
T 1k0r_A 308 AARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 346 (366)
T ss_dssp EEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESS
T ss_pred EEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHH
Confidence 788999999999999999999999999999999998743
No 80
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=95.83 E-value=0.0035 Score=62.57 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHhhccccccCCCCCCceeEEEEEecCccceeecCCChHHHHHHHhcCCEEEEeccCCCCCCCCceEEEEE
Q 019747 96 RAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLT 175 (336)
Q Consensus 96 ~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~l~ip~~~~g~iIG~~G~~Ik~I~~~tga~I~i~~~~~~~~~~~~r~v~I~ 175 (336)
++...|.+.+.+.+.......+...+....+.||.+.++.+||++|.+|+.|.++||+.|.+.. +..+.|.
T Consensus 534 ~~~~~I~~~m~~al~~~~~~~~~~ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~---------dg~v~I~ 604 (723)
T 3cdi_A 534 GARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED---------DGTVKIA 604 (723)
T ss_dssp HHHHHHHHHHHHHCC-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhcchhccccCceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC---------CccEEEe
Confidence 3444566566665554423333445667788999999999999999999999999999998874 3456666
Q ss_pred cC-HHHHHHHHHHHHHHhh
Q 019747 176 GT-LDEQMRALELILLKLS 193 (336)
Q Consensus 176 G~-~~~v~~A~~~i~~~l~ 193 (336)
+. .+.+.+|.+.+..++.
T Consensus 605 ~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 605 ATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp -------------------
T ss_pred cCCHHHHHHHHHHHHHHhh
Confidence 65 5677778777766553
No 81
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=95.79 E-value=0.02 Score=52.16 Aligned_cols=40 Identities=20% Similarity=0.422 Sum_probs=36.9
Q ss_pred eEEEEEeccCcccceeccCCchHHHHHhHhCCeEEEccCC
Q 019747 257 NSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRG 296 (336)
Q Consensus 257 ~~~~v~vp~~~vg~IIGk~G~~I~~I~~~sga~I~i~~~~ 296 (336)
....+.||.+..+..|||+|.|++-..+.||.+|.|....
T Consensus 307 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 346 (366)
T 1k0r_A 307 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 346 (366)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESS
T ss_pred cEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHH
Confidence 5688999999999999999999999999999999997753
No 82
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=95.68 E-value=0.0034 Score=62.70 Aligned_cols=63 Identities=25% Similarity=0.386 Sum_probs=0.0
Q ss_pred eEEEEEeccCcccceeccCCchHHHHHhHhCCeEEEccCCCCCCCCcceEEEEEc-ChHhHHHHHHHHHHHHH
Q 019747 257 NSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISG-PQRSIRTAESMIMQKVA 328 (336)
Q Consensus 257 ~~~~v~vp~~~vg~IIGk~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~i~ 328 (336)
....+.||.++++.|||++|.+|+.|.+++|+.|.|.+ +..|.|.+ ..+.++.|+.+|...+.
T Consensus 560 ~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~---------dg~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 560 RIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED---------DGTVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp -------------------------------------------------------------------------
T ss_pred eEEEEEECHHHhcccccccceeeeeeehhhCceEEecC---------CccEEEecCCHHHHHHHHHHHHHHhh
Confidence 55678899999999999999999999999999998853 45666666 56677888887776654
No 83
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=95.19 E-value=0.0023 Score=64.14 Aligned_cols=87 Identities=16% Similarity=0.181 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhccccccCCCCCCceeEEEEEecCccceeecCCChHHHHHHHhcCCEEEEeccCCCCCCCCceEEEEE
Q 019747 96 RAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISRLDHSYYGLNDRLVTLT 175 (336)
Q Consensus 96 ~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~l~ip~~~~g~iIG~~G~~Ik~I~~~tga~I~i~~~~~~~~~~~~r~v~I~ 175 (336)
++...|.+.+.+.+... .......+....+.||.+.++.+||++|.+|+.|.+++|+.|.|.. +..|.|.
T Consensus 573 ~~~~~I~~~m~~al~~~-~~~~~~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~---------dG~v~Is 642 (757)
T 1e3p_A 573 DARLHILDVMMEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED---------DGTIYIG 642 (757)
T ss_dssp HHHHHHHHHHHHHCSSC-CCCCTTSCBCCCC------------------CTTCCCCCSCC-----------------CCC
T ss_pred HHHHHHHHHHHHHhccc-ccccccCceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC---------CceEEEe
Confidence 34455665666655444 3333444566678999999999999999999999999999998874 3456666
Q ss_pred cC-HHHHHHHHHHHHHHh
Q 019747 176 GT-LDEQMRALELILLKL 192 (336)
Q Consensus 176 G~-~~~v~~A~~~i~~~l 192 (336)
+. .....+|.+.|..+.
T Consensus 643 ~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 643 AADGPAAEAARATINGIA 660 (757)
T ss_dssp BSSHHHHCC---------
T ss_pred cCCHHHHHHHHHHHHHhc
Confidence 65 566667766666554
No 84
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=95.00 E-value=0.0023 Score=64.18 Aligned_cols=62 Identities=23% Similarity=0.340 Sum_probs=20.8
Q ss_pred eEEEEEeccCcccceeccCCchHHHHHhHhCCeEEEccCCCCCCCCcceEEEEEc-ChHhHHHHHHHHHHHH
Q 019747 257 NSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISG-PQRSIRTAESMIMQKV 327 (336)
Q Consensus 257 ~~~~v~vp~~~vg~IIGk~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~i 327 (336)
....+.||.+++|.+||++|++|+.|.+.+|+.|.|.+ +..|.|++ ..+..+.|+.+|..+.
T Consensus 598 ~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~---------dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 598 RIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED---------DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp BCCCC------------------CTTCCCCCSCC-----------------CCCBSSHHHHCC---------
T ss_pred eeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC---------CceEEEecCCHHHHHHHHHHHHHhc
Confidence 33467799999999999999999999999999999953 46677777 4566667777776654
No 85
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=94.74 E-value=0.016 Score=52.56 Aligned_cols=91 Identities=21% Similarity=0.256 Sum_probs=65.0
Q ss_pred ccceeecCCChHHHHHHHHh-CCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHHHHhhccc-ccc--CCCCCC
Q 019747 45 LAGAVIGKGGSTINDFQSQS-GARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTELHA-EDQ--ADDVGT 120 (336)
Q Consensus 45 ~vg~iIGk~G~~Ik~I~~~t-g~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~~~~~~-~~~--~~~~~~ 120 (336)
-+|+.||.+|.+|+.+.++. |=+|.+-..++ ++. . .+...+.. .-. ....+.
T Consensus 246 pvGacvg~~G~ri~~i~~el~ge~Idii~~s~--------------d~~------~----fi~nal~Pa~v~~v~~~d~~ 301 (344)
T 1hh2_P 246 PIGACIGEGGSRIAAILKELKGEKLDVLKWSD--------------DPK------Q----LIANALAPATVIEVEILDKE 301 (344)
T ss_dssp HHHHHHCTTSTTHHHHHHHTTTCEEEEEECCS--------------SHH------H----HHHHHTCSSCCSEEEEEETT
T ss_pred ccceeeccCCcEeHHHHHHhCCCeeeEEecCC--------------CHH------H----HHHHhcCccEEEEEEEEcCC
Confidence 58999999999999999998 78888855432 111 1 11121111 100 000123
Q ss_pred ceeEEEEEecCccceeecCCChHHHHHHHhcCCEEEEec
Q 019747 121 KTKLRLIVPNSSCGSIIGKAGATIKSFMDDSQAVIKISR 159 (336)
Q Consensus 121 ~~~~~l~ip~~~~g~iIG~~G~~Ik~I~~~tga~I~i~~ 159 (336)
.....+.||..+.+.-||++|.+++--.+-||.+|.|..
T Consensus 302 ~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 302 NKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp TTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred CCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 457889999999999999999999999999999999976
No 86
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=93.85 E-value=0.065 Score=48.53 Aligned_cols=39 Identities=18% Similarity=0.434 Sum_probs=35.9
Q ss_pred eEEEEEeccCcccceeccCCchHHHHHhHhCCeEEEccC
Q 019747 257 NSLTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDR 295 (336)
Q Consensus 257 ~~~~v~vp~~~vg~IIGk~G~~I~~I~~~sga~I~i~~~ 295 (336)
....+.||.+..+.-|||+|.|++--.+.||.+|.|...
T Consensus 303 ~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 303 KAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp TEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred CEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 568899999999999999999999999999999999653
No 87
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=92.11 E-value=1.3 Score=32.94 Aligned_cols=48 Identities=10% Similarity=0.127 Sum_probs=31.8
Q ss_pred chHHHHHhHhCCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHHHhhh
Q 019747 277 RNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVAYAS 331 (336)
Q Consensus 277 ~~I~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 331 (336)
+.|++-+...|+--.--+ .+.-.|.|+|-|+||.+-...=.+++..+.
T Consensus 103 emirqarkfagtvtytl~-------gn~l~i~itgvpeqvrkelakeaerl~~ef 150 (170)
T 4hhu_A 103 EMIRQARKFAGTVTYTLS-------GNRLVIVITGVPEQVRKELAKEAERLKAEF 150 (170)
T ss_dssp HHHHHHHHTTCEEEEEEC-------SSEEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcceEEEEEe-------CCEEEEEEeCCcHHHHHHHHHHHHHHHHhc
Confidence 456666666775433322 356789999999999886666666665544
No 88
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=83.45 E-value=0.47 Score=37.59 Aligned_cols=66 Identities=11% Similarity=0.079 Sum_probs=41.0
Q ss_pred EEEEEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHHHHhh
Q 019747 36 YIRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108 (336)
Q Consensus 36 ~~~i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~~~ 108 (336)
++.+.+..+..|.+|||.|.|++.|+--+...++-. . .-.-.+-+.+..+.-.+.+..+...+.+.
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~vn~~--~-----~~~V~LDve~YRerReetL~~lA~~~A~k 99 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIHPT--Y-----GYSIRLEISTFLQNQEKVMDTQLQSVIMT 99 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHHHHHH--H-----SCEEEEEETTHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHHHHhhhc--C-----CceEEEEhHHhHHHHHHHHHHHHHHHHHH
Confidence 466777788999999999999999995543222211 0 01112334455566666666666665555
No 89
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=81.24 E-value=0.54 Score=33.88 Aligned_cols=28 Identities=14% Similarity=0.328 Sum_probs=24.2
Q ss_pred EEEEEEecCccceeecCCChHHHHHHHH
Q 019747 36 YIRFLVSNPLAGAVIGKGGSTINDFQSQ 63 (336)
Q Consensus 36 ~~~i~ip~~~vg~iIGk~G~~Ik~I~~~ 63 (336)
.+++.|....-|.|||++|..|++|+.+
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 4788888899999999999999988754
No 90
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=76.20 E-value=1.1 Score=35.40 Aligned_cols=30 Identities=20% Similarity=0.352 Sum_probs=25.7
Q ss_pred eEEEEEeccCcccceeccCCchHHHHHhHh
Q 019747 257 NSLTIGVADEHIGFVVGRGGRNIMEISQIS 286 (336)
Q Consensus 257 ~~~~v~vp~~~vg~IIGk~G~~I~~I~~~s 286 (336)
.+..+.+-.+-.|.+|||.|.+++.||-.+
T Consensus 33 ~~i~i~i~ged~glLIGK~G~TL~ALQyL~ 62 (152)
T 2pt7_G 33 GVLLIDIDGEDSALLIGEKGYRYKALSYLL 62 (152)
T ss_dssp TEEEEEEEEGGGTTTTCGGGHHHHHHHHHH
T ss_pred CEEEEEEecCCcceEECCCCcchHHHHHHH
Confidence 356777888899999999999999997666
No 91
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=68.37 E-value=10 Score=32.02 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=44.1
Q ss_pred EEEEeccCcccceeccCCchHHHHHhHhCCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHH
Q 019747 259 LTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMI 323 (336)
Q Consensus 259 ~~v~vp~~~vg~IIGk~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I 323 (336)
..+.++..++.+++|+++..++.|.+.+++.|.+-. +-.|=|.+.......+...|
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~---------NG~IWi~~~~~~~~~~~~ai 193 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ---------NGLIWVNGDRRKVSIAEEAI 193 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECT---------TSEEEEESCHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEEC---------CcEEEEeCCchhHHHHHHHH
Confidence 456789999999999999999999999999999943 44555888776555555544
No 92
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=65.50 E-value=2.3 Score=30.53 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=22.9
Q ss_pred eEEEEEeccCcccceeccCCchHHHHHhH
Q 019747 257 NSLTIGVADEHIGFVVGRGGRNIMEISQI 285 (336)
Q Consensus 257 ~~~~v~vp~~~vg~IIGk~G~~I~~I~~~ 285 (336)
...+|.|....-|.|||++|..|++|+..
T Consensus 35 ~~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 35 TRTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp SCEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred CeEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 34677777778899999999989887543
No 93
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=60.38 E-value=2.3 Score=35.97 Aligned_cols=67 Identities=13% Similarity=0.153 Sum_probs=39.8
Q ss_pred EEEEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHHHHhh
Q 019747 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108 (336)
Q Consensus 37 ~~i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~~~ 108 (336)
+.|.|.....|.+||+.|.++..||--+..-++-.... ...-.+-|.|..+.-.+.+..+...+.+.
T Consensus 94 i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn~~~~~-----~~rv~LDi~~YR~rR~e~L~~lA~~~A~k 160 (225)
T 3gku_A 94 MNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVNKSSSD-----YIRVKLDTENYRERRKETLETLAKNIAYK 160 (225)
T ss_dssp EEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHHHTCSS-----CCEEEEESTTHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCccceeecCCCeEhHHHHHHHHHHHHhcCCC-----ceEEEEecchHHHHHHHHHHHHHHHHHHH
Confidence 45556677899999999999999998777554432110 11222333455555455554444444333
No 94
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=56.42 E-value=26 Score=29.58 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=44.5
Q ss_pred EEEEeccCcccceeccCCchHHHHHhHhCCeEEEccCCCCCCCCcceEEEEEc-ChHhHHHHHHHHH
Q 019747 259 LTIGVADEHIGFVVGRGGRNIMEISQISGARIKVSDRGDFFSGTSERKVTISG-PQRSIRTAESMIM 324 (336)
Q Consensus 259 ~~v~vp~~~vg~IIGk~G~~I~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~ 324 (336)
..+.++...+.+++|++|..+..|.+.+++.|.+-. +..|-|.+ +++.+..+...|.
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~---------NG~IWi~~~~~~~~~~~~~ai~ 207 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVAR---------NGRIHLECPNEDLEAIAVMAIK 207 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEET---------TTEEEEECSCHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeC---------CCEEEEecCCHHHHHHHHHHHH
Confidence 566889999999999999999999999999999943 45556775 5656665555553
No 95
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=55.21 E-value=4.2 Score=34.55 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=24.1
Q ss_pred EEEEEecCccceeecCCChHHHHHHHHh
Q 019747 37 IRFLVSNPLAGAVIGKGGSTINDFQSQS 64 (336)
Q Consensus 37 ~~i~ip~~~vg~iIGk~G~~Ik~I~~~t 64 (336)
++|.|....-|.|||++|..|++|+..-
T Consensus 46 i~I~I~t~rPg~VIGkkG~~I~~L~~~l 73 (240)
T 3u5c_D 46 TEVIIRATRTQDVLGENGRRINELTLLV 73 (240)
T ss_dssp EEEEEEESCHHHHHTTTTCTHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 6788888999999999999999887543
No 96
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=55.09 E-value=4.2 Score=33.90 Aligned_cols=27 Identities=26% Similarity=0.537 Sum_probs=23.1
Q ss_pred EEEEEecCccceeecCCChHHHHHHHH
Q 019747 37 IRFLVSNPLAGAVIGKGGSTINDFQSQ 63 (336)
Q Consensus 37 ~~i~ip~~~vg~iIGk~G~~Ik~I~~~ 63 (336)
+++.|....-|.|||++|..|++|+..
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~ 68 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRI 68 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 677788888999999999999998643
No 97
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=54.74 E-value=30 Score=22.62 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=29.0
Q ss_pred hHHHHHhHhCCeEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHHHhh
Q 019747 278 NIMEISQISGARIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVAYA 330 (336)
Q Consensus 278 ~I~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 330 (336)
.|++-+...|+--.--+ .++-.|.|+|-|+||.+-...-.+++..+
T Consensus 22 mirqarkfagtvtytld-------gndleiritgvpeqvrkelakeaerlake 67 (85)
T 2kl8_A 22 MIRQARKFAGTVTYTLD-------GNDLEIRITGVPEQVRKELAKEAERLAKE 67 (85)
T ss_dssp HHHHHTTTTCEEEEEEC-------SSCEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcceEEEEec-------CCeeEEEEecChHHHHHHHHHHHHHHHHh
Confidence 45555555564333221 35778999999999988665555555543
No 98
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=54.34 E-value=5.4 Score=34.00 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=24.8
Q ss_pred EEEEEEecCccceeecCCChHHHHHHHH
Q 019747 36 YIRFLVSNPLAGAVIGKGGSTINDFQSQ 63 (336)
Q Consensus 36 ~~~i~ip~~~vg~iIGk~G~~Ik~I~~~ 63 (336)
.++|.|....-|.|||++|..|++|+..
T Consensus 48 ~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 48 KTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp CEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred eEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 4788888999999999999999998765
No 99
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=54.01 E-value=20 Score=30.16 Aligned_cols=60 Identities=22% Similarity=0.318 Sum_probs=43.5
Q ss_pred EEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEEeeHHHHHHHHHHHHHHHHhh
Q 019747 39 FLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISGTIDEILRAVDLVIDKLLTE 108 (336)
Q Consensus 39 i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~~~ 108 (336)
+-++...+..++|+++..++.|.+.++|.|-+-. +-.|-|.+.......+...|. .+.++
T Consensus 140 ~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~---------NG~IWi~~~~~~~~~~~~ai~-~~e~~ 199 (229)
T 2ba0_A 140 VAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ---------NGLIWVNGDRRKVSIAEEAIY-LIEQE 199 (229)
T ss_dssp EECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECT---------TSEEEEESCHHHHHHHHHHHH-HHHHC
T ss_pred EEECHHHhHHHhcCCchHHHHhcccCCeEEEEEC---------CcEEEEeCCchhHHHHHHHHH-HHHhh
Confidence 4677778889999999999999999999999942 223457777665555555555 44444
No 100
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=50.43 E-value=4.3 Score=34.20 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=24.4
Q ss_pred EEEEEEecCccceeecCCChHHHHHHHH
Q 019747 36 YIRFLVSNPLAGAVIGKGGSTINDFQSQ 63 (336)
Q Consensus 36 ~~~i~ip~~~vg~iIGk~G~~Ik~I~~~ 63 (336)
.+++.|....-|.|||++|..|++|+.+
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 4778889999999999999999998754
No 101
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=50.15 E-value=36 Score=28.65 Aligned_cols=62 Identities=19% Similarity=0.150 Sum_probs=45.4
Q ss_pred EEEEEecCccceeecCCChHHHHHHHHhCCeEEEcCCCCCCCCCCceEEEEEe-eHHHHHHHHHHHHHHHHhh
Q 019747 37 IRFLVSNPLAGAVIGKGGSTINDFQSQSGARIQLSRSHEFFPGTTDRIIMISG-TIDEILRAVDLVIDKLLTE 108 (336)
Q Consensus 37 ~~i~ip~~~vg~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~~~~r~i~I~G-~~~~v~~A~~~I~~~i~~~ 108 (336)
+-+.++...+..++|++|..++.|.+++++.|-+-. +-.|-|.+ +.+....+...|. .+.++
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~---------NG~IWi~~~~~~~~~~~~~ai~-~~e~~ 212 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVAR---------NGRIHLECPNEDLEAIAVMAIK-IIDEE 212 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEET---------TTEEEEECSCHHHHHHHHHHHH-HHHHC
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeC---------CCEEEEecCCHHHHHHHHHHHH-HHHhh
Confidence 345678889999999999999999999999999943 33355664 5556666666665 55555
No 102
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=48.83 E-value=10 Score=33.39 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=28.3
Q ss_pred ceEEEEEeccC-cccceeccCCchHHHH--------HhHhCCeEEE
Q 019747 256 TNSLTIGVADE-HIGFVVGRGGRNIMEI--------SQISGARIKV 292 (336)
Q Consensus 256 ~~~~~v~vp~~-~vg~IIGk~G~~I~~I--------~~~sga~I~i 292 (336)
.+...+.|..+ +-+-|||++|++||+| ++..|++|.+
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 35567777764 5588999999999986 5567887776
No 103
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=46.77 E-value=4.5 Score=33.60 Aligned_cols=34 Identities=29% Similarity=0.548 Sum_probs=26.1
Q ss_pred EEEEEecCccceeecCCChHHHHHHH----HhCCeEEE
Q 019747 37 IRFLVSNPLAGAVIGKGGSTINDFQS----QSGARIQL 70 (336)
Q Consensus 37 ~~i~ip~~~vg~iIGk~G~~Ik~I~~----~tg~~I~i 70 (336)
+++.|....-|.|||++|+.|++|+. .++..+++
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~~~v~I 100 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQI 100 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHSSCBCC
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEE
Confidence 56677778889999999999998864 56655444
No 104
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=45.76 E-value=5.8 Score=33.45 Aligned_cols=35 Identities=9% Similarity=0.463 Sum_probs=28.2
Q ss_pred eEEEEEeccCcccceeccCCchHHHHHhHhCCeEE
Q 019747 257 NSLTIGVADEHIGFVVGRGGRNIMEISQISGARIK 291 (336)
Q Consensus 257 ~~~~v~vp~~~vg~IIGk~G~~I~~I~~~sga~I~ 291 (336)
....+.|..+-.|.+||++|.+++.||..+...+.
T Consensus 92 ~~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn 126 (225)
T 3gku_A 92 KEMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVN 126 (225)
T ss_dssp TEEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCccceeecCCCeEhHHHHHHHHHHHH
Confidence 34566777778899999999999999988875443
No 105
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=45.00 E-value=4.9 Score=34.24 Aligned_cols=29 Identities=14% Similarity=0.305 Sum_probs=25.0
Q ss_pred EEEEEEecCccceeecCCChHHHHHHHHh
Q 019747 36 YIRFLVSNPLAGAVIGKGGSTINDFQSQS 64 (336)
Q Consensus 36 ~~~i~ip~~~vg~iIGk~G~~Ik~I~~~t 64 (336)
.+++.|....-|.|||++|..|++|++.-
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~L 73 (243)
T 2zkq_c 45 RTEIIILATRTQNVLGEKGRRIRELTAVV 73 (243)
T ss_dssp EECCEEEESCHHHHHCGGGHHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchHHHHHHHHH
Confidence 47788888999999999999999988653
No 106
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=44.10 E-value=5.2 Score=33.89 Aligned_cols=26 Identities=31% Similarity=0.592 Sum_probs=22.1
Q ss_pred EEEEEecCccceeecCCChHHHHHHH
Q 019747 37 IRFLVSNPLAGAVIGKGGSTINDFQS 62 (336)
Q Consensus 37 ~~i~ip~~~vg~iIGk~G~~Ik~I~~ 62 (336)
++|.|....-|.|||++|..|++|+.
T Consensus 64 i~I~I~t~rPg~vIGkkG~~I~~L~~ 89 (233)
T 3i1m_C 64 IRVTIHTARPGIVIGKKGEDVEKLRK 89 (233)
T ss_dssp BCCEEEESCHHHHHCSTTHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHH
Confidence 56777778889999999999998874
No 107
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=42.74 E-value=7.8 Score=32.96 Aligned_cols=27 Identities=30% Similarity=0.546 Sum_probs=22.5
Q ss_pred EEEEEecCccceeecCCChHHHHHHHH
Q 019747 37 IRFLVSNPLAGAVIGKGGSTINDFQSQ 63 (336)
Q Consensus 37 ~~i~ip~~~vg~iIGk~G~~Ik~I~~~ 63 (336)
++|.|....-|.|||++|..|++|+.+
T Consensus 64 i~I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 64 VAVTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp BCCEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred EEEEEEeCCCcceecCCchHHHHHHHH
Confidence 556677788899999999999988755
No 108
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=41.35 E-value=10 Score=33.38 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=28.1
Q ss_pred cEEEEEEEecC-ccceeecCCChHHHHHH--------HHhCCeEEE
Q 019747 34 PTYIRFLVSNP-LAGAVIGKGGSTINDFQ--------SQSGARIQL 70 (336)
Q Consensus 34 ~~~~~i~ip~~-~vg~iIGk~G~~Ik~I~--------~~tg~~I~i 70 (336)
.+...|+|..+ +-+.|||++|+.||+|. +-+|++|.+
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 46667777765 78899999999999875 346666666
No 109
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=39.25 E-value=7.1 Score=32.76 Aligned_cols=28 Identities=11% Similarity=0.239 Sum_probs=22.8
Q ss_pred EEEEEecCccceeecCCChHHHHHHHHh
Q 019747 37 IRFLVSNPLAGAVIGKGGSTINDFQSQS 64 (336)
Q Consensus 37 ~~i~ip~~~vg~iIGk~G~~Ik~I~~~t 64 (336)
+++.|....-|.|||++|..|++|+.+-
T Consensus 72 i~I~I~~~rPg~vIGk~g~~i~~L~~~l 99 (218)
T 3bbn_C 72 IQVIIHMGFPKLLIENRPQGVEDLKINV 99 (218)
T ss_dssp BCCEEEESCTTTTSCSSSCTTHHHHHHH
T ss_pred EEEEEEecCCCcEecCCcHHHHHHHHHH
Confidence 5566777888999999999999987553
No 110
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=38.65 E-value=1.2e+02 Score=22.45 Aligned_cols=97 Identities=16% Similarity=0.246 Sum_probs=54.9
Q ss_pred CceEEEEEeeHHHHHHHHHHHHHHHHhhccccccCCCCCCceeEEEEEecCccce-eecCCChH-----------HHHHH
Q 019747 81 TDRIIMISGTIDEILRAVDLVIDKLLTELHAEDQADDVGTKTKLRLIVPNSSCGS-IIGKAGAT-----------IKSFM 148 (336)
Q Consensus 81 ~~r~i~I~G~~~~v~~A~~~I~~~i~~~~~~~~~~~~~~~~~~~~l~ip~~~~g~-iIG~~G~~-----------Ik~I~ 148 (336)
.+-.+.|+|-++++.+-+..-.+.+..++.- .....|-.+-.|. .|-..|.. |++-+
T Consensus 41 n~l~i~itgvpeqvrkelakeaerl~~efni-----------~v~y~imgsgsgvm~i~f~gddlea~ekalkemirqar 109 (170)
T 4hhu_A 41 NRLVIVITGVPEQVRKELAKEAERLKAEFNI-----------NVQYQIMGSGSGVMVIVFEGDDLEALEKALKEMIRQAR 109 (170)
T ss_dssp TEEEEEEESCCHHHHHHHHHHHHHHHHHHTC-----------EEEEEEECTTCCEEEEEEECSCHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHHHHHhcce-----------EEEEEEEeCCceEEEEEEecCcHHHHHHHHHHHHHHHH
Confidence 4678999999999998877777777776432 1222222221111 12222322 33333
Q ss_pred HhcCCEEEEeccCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHhhcC
Q 019747 149 DDSQAVIKISRLDHSYYGLNDRLVTLTGTLDEQMRALELILLKLSED 195 (336)
Q Consensus 149 ~~tga~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~i~~~l~~~ 195 (336)
+-.|+--... +.++-.+.|+|-+++|.+-+..=.+.+...
T Consensus 110 kfagtvtytl-------~gn~l~i~itgvpeqvrkelakeaerl~~e 149 (170)
T 4hhu_A 110 KFAGTVTYTL-------SGNRLVIVITGVPEQVRKELAKEAERLKAE 149 (170)
T ss_dssp HTTCEEEEEE-------CSSEEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred hhcceEEEEE-------eCCEEEEEEeCCcHHHHHHHHHHHHHHHHh
Confidence 4344322111 125568999999999988666555666543
No 111
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=38.27 E-value=35 Score=27.41 Aligned_cols=58 Identities=9% Similarity=0.024 Sum_probs=42.6
Q ss_pred EEEEeccCcccceeccCCc-hHHHHHhHhCCeEEEccCCCCCCCCcceEEEEEc-ChHhHHHHHHHHHH
Q 019747 259 LTIGVADEHIGFVVGRGGR-NIMEISQISGARIKVSDRGDFFSGTSERKVTISG-PQRSIRTAESMIMQ 325 (336)
Q Consensus 259 ~~v~vp~~~vg~IIGk~G~-~I~~I~~~sga~I~i~~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~ 325 (336)
.-+.||..++.+++|+.|. .|+.|.+.+++.|.+-. +-.|=|.+ ++..+-.+...|..
T Consensus 93 ~l~~v~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~---------NG~IWi~~~~~~~~~~v~~aI~~ 152 (175)
T 2ja9_A 93 MIIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIGL---------NGKIWVKCEELSNTLACYRTIME 152 (175)
T ss_dssp EEEECCHHHHHHHHHCTTCCHHHHHHTTCCCEEEEET---------TTEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEEcHHHhhHHhcCCCcchHHhhhccCCeEEEEEC---------CcEEEEecCCHHHHHHHHHHHHH
Confidence 5678999999999999888 89999999999999944 33444665 45444444455544
No 112
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=36.76 E-value=14 Score=31.24 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=22.8
Q ss_pred EEEEEeccCcccceeccCCchHHHHHhH
Q 019747 258 SLTIGVADEHIGFVVGRGGRNIMEISQI 285 (336)
Q Consensus 258 ~~~v~vp~~~vg~IIGk~G~~I~~I~~~ 285 (336)
..+|.|-...-|.|||++|..|++|+..
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 4567777778899999999999987544
No 113
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=32.57 E-value=15 Score=32.15 Aligned_cols=34 Identities=29% Similarity=0.547 Sum_probs=25.6
Q ss_pred EEEEecc-CcccceeccCCchHHHH--------HhHhCCeEEE
Q 019747 259 LTIGVAD-EHIGFVVGRGGRNIMEI--------SQISGARIKV 292 (336)
Q Consensus 259 ~~v~vp~-~~vg~IIGk~G~~I~~I--------~~~sga~I~i 292 (336)
..+.|.. .+.+.|||++|++||+| ++..|++|.+
T Consensus 232 ~~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l 274 (301)
T 1wf3_A 232 AILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYL 274 (301)
T ss_dssp EEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred EEEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEE
Confidence 4455554 45589999999999986 5677888776
No 114
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=32.34 E-value=18 Score=30.81 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=23.9
Q ss_pred eEEEEEeccCcccceeccCCchHHHHHhH
Q 019747 257 NSLTIGVADEHIGFVVGRGGRNIMEISQI 285 (336)
Q Consensus 257 ~~~~v~vp~~~vg~IIGk~G~~I~~I~~~ 285 (336)
...+|.|-...-|.|||++|..|++|+..
T Consensus 47 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 47 TKTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp SCEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred CeEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 34677777888899999999999998664
No 115
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.71 E-value=17 Score=30.21 Aligned_cols=36 Identities=33% Similarity=0.659 Sum_probs=25.8
Q ss_pred EEEEeccCcccceeccCCchHHHHHh----HhC---CeEEEcc
Q 019747 259 LTIGVADEHIGFVVGRGGRNIMEISQ----ISG---ARIKVSD 294 (336)
Q Consensus 259 ~~v~vp~~~vg~IIGk~G~~I~~I~~----~sg---a~I~i~~ 294 (336)
.++.|-...-|.|||++|..|++|+. .++ .+|.+.+
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~l~k~~~~~~v~I~i~e 84 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEVEE 84 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHHHHHHSSCSSCEEEEEE
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCCCceEEEEEE
Confidence 46666677789999999999998754 455 3455543
No 116
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=30.17 E-value=17 Score=30.61 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=23.5
Q ss_pred eEEEEEeccCcccceeccCCchHHHHHhH
Q 019747 257 NSLTIGVADEHIGFVVGRGGRNIMEISQI 285 (336)
Q Consensus 257 ~~~~v~vp~~~vg~IIGk~G~~I~~I~~~ 285 (336)
...++.|-...-|.|||++|..|++|+..
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (227)
T 3iz6_B 44 MRTEIIIRATRTQNVLGEKGRRIRELTSV 72 (227)
T ss_dssp TEECCEEECTTHHHHHCSSSSHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 34677777888899999999999987543
No 117
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=29.63 E-value=95 Score=22.28 Aligned_cols=51 Identities=12% Similarity=0.066 Sum_probs=36.2
Q ss_pred ChHHHHHHHhcCCEEEEeccC-CCCCC--CCceEEEEEcCHHHHHHHHHHHHHH
Q 019747 141 GATIKSFMDDSQAVIKISRLD-HSYYG--LNDRLVTLTGTLDEQMRALELILLK 191 (336)
Q Consensus 141 G~~Ik~I~~~tga~I~i~~~~-~~~~~--~~~r~v~I~G~~~~v~~A~~~i~~~ 191 (336)
.-.|.++.+++++.++|.... +...+ -..-++.+.|+.+++.+|+..+.+.
T Consensus 35 ~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~ 88 (106)
T 3dhx_A 35 APLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEH 88 (106)
T ss_dssp CCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 346899999999999997510 00001 1234788999999999999888764
No 118
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=29.23 E-value=62 Score=24.91 Aligned_cols=58 Identities=16% Similarity=0.276 Sum_probs=36.1
Q ss_pred ecCCChHHHHHHHHhCCeEEEcCCCCCCCC--------------CCceEEEEEee-----HHHHHHHHHHHHHHHHhhc
Q 019747 50 IGKGGSTINDFQSQSGARIQLSRSHEFFPG--------------TTDRIIMISGT-----IDEILRAVDLVIDKLLTEL 109 (336)
Q Consensus 50 IGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~--------------~~~r~i~I~G~-----~~~v~~A~~~I~~~i~~~~ 109 (336)
=|+||.++++ -+|.|.+.|.-..-.+|. ..+-.|+|... ..|-..|+..+.+.|.+..
T Consensus 23 sGpGGQnVNK--v~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ~~Nr~~A~~rL~~~l~~a~ 99 (140)
T 4dh9_Y 23 QGAGGQHVNK--TSTAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELNREAALARLVAMIKELT 99 (140)
T ss_dssp CSSSSHHHHT--TCCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcccc--ccceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcCCcCHHHHHHHHHHHHHHHHHHhc
Confidence 5999999995 346777776322112232 01123555543 4688899999998887764
No 119
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=29.12 E-value=63 Score=23.27 Aligned_cols=51 Identities=10% Similarity=0.100 Sum_probs=35.6
Q ss_pred CchHHHHHhHhCCeEEEccCCC-CCCC--CcceEEEEEcChHhHHHHHHHHHHH
Q 019747 276 GRNIMEISQISGARIKVSDRGD-FFSG--TSERKVTISGPQRSIRTAESMIMQK 326 (336)
Q Consensus 276 G~~I~~I~~~sga~I~i~~~~~-~~~~--~~~r~v~I~G~~~~v~~A~~~I~~~ 326 (336)
.-.|.+|-+++|..+.|-...- ...+ -..=+|.+.|..+++++|...+.+.
T Consensus 35 ~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~ 88 (106)
T 3dhx_A 35 APLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEH 88 (106)
T ss_dssp CCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 4578999999999998865310 0000 0123688999999999999888654
No 120
>2y9k_A Protein INVG; protein transport, type III secretion system, outer membrane secretin family, C15 fold; 8.30A {Salmonella enterica subsp}
Probab=27.35 E-value=2e+02 Score=21.58 Aligned_cols=25 Identities=12% Similarity=0.149 Sum_probs=20.9
Q ss_pred CcceEEEEEcChHhHHHHHHHHHHH
Q 019747 302 TSERKVTISGPQRSIRTAESMIMQK 326 (336)
Q Consensus 302 ~~~r~v~I~G~~~~v~~A~~~I~~~ 326 (336)
.....+.|+|++..++..+.++.++
T Consensus 109 ~~tn~l~v~g~~~~v~~v~~~i~~l 133 (137)
T 2y9k_A 109 NRKGTFYVSGPPVYVDMVVNAATMM 133 (137)
T ss_dssp SSTTEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHh
Confidence 3578899999999999999888643
No 121
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=25.45 E-value=17 Score=30.85 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=24.1
Q ss_pred eEEEEEeccCcccceeccCCchHHHHHhHh
Q 019747 257 NSLTIGVADEHIGFVVGRGGRNIMEISQIS 286 (336)
Q Consensus 257 ~~~~v~vp~~~vg~IIGk~G~~I~~I~~~s 286 (336)
...+|.|-...-|.|||++|..|++|+...
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~L 73 (243)
T 2zkq_c 44 TRTEIIILATRTQNVLGEKGRRIRELTAVV 73 (243)
T ss_dssp TEECCEEEESCHHHHHCGGGHHHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchHHHHHHHHH
Confidence 456677777888999999999999986653
No 122
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=24.68 E-value=25 Score=29.83 Aligned_cols=27 Identities=30% Similarity=0.526 Sum_probs=20.6
Q ss_pred EEEEeccCcccceeccCCchHHHHHhH
Q 019747 259 LTIGVADEHIGFVVGRGGRNIMEISQI 285 (336)
Q Consensus 259 ~~v~vp~~~vg~IIGk~G~~I~~I~~~ 285 (336)
.+|.|-...-|.|||++|+.|++|+..
T Consensus 64 i~I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 64 VAVTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp BCCEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred EEEEEEeCCCcceecCCchHHHHHHHH
Confidence 344555667799999999999988654
No 123
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=24.40 E-value=16 Score=30.27 Aligned_cols=34 Identities=18% Similarity=0.559 Sum_probs=24.1
Q ss_pred EEEEeccCcccceeccCCchHHHHH----hHhCCeEEE
Q 019747 259 LTIGVADEHIGFVVGRGGRNIMEIS----QISGARIKV 292 (336)
Q Consensus 259 ~~v~vp~~~vg~IIGk~G~~I~~I~----~~sga~I~i 292 (336)
.+|.|-...-|.|||++|+.|++|+ ..++..+.|
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~~~v~I 100 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQI 100 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHSSCBCC
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEE
Confidence 4455556677899999999998875 456654443
No 124
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=23.93 E-value=23 Score=29.64 Aligned_cols=27 Identities=0% Similarity=0.049 Sum_probs=20.3
Q ss_pred EEEEeccCcccceeccCCchHHHHHhH
Q 019747 259 LTIGVADEHIGFVVGRGGRNIMEISQI 285 (336)
Q Consensus 259 ~~v~vp~~~vg~IIGk~G~~I~~I~~~ 285 (336)
.+|.|-...-|.|||++|..|++|+..
T Consensus 72 i~I~I~~~rPg~vIGk~g~~i~~L~~~ 98 (218)
T 3bbn_C 72 IQVIIHMGFPKLLIENRPQGVEDLKIN 98 (218)
T ss_dssp BCCEEEESCTTTTSCSSSCTTHHHHHH
T ss_pred EEEEEEecCCCcEecCCcHHHHHHHHH
Confidence 344455566789999999999988654
No 125
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=23.28 E-value=13 Score=32.54 Aligned_cols=27 Identities=30% Similarity=0.564 Sum_probs=20.8
Q ss_pred CccceeecCCChHHHHHH--------HHhCCeEEE
Q 019747 44 PLAGAVIGKGGSTINDFQ--------SQSGARIQL 70 (336)
Q Consensus 44 ~~vg~iIGk~G~~Ik~I~--------~~tg~~I~i 70 (336)
++-+.|||++|+.||+|. +-++++|+.
T Consensus 240 ~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l 274 (301)
T 1wf3_A 240 SQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYL 274 (301)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEE
Confidence 467889999999999875 445666665
No 126
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=22.06 E-value=18 Score=30.48 Aligned_cols=26 Identities=15% Similarity=0.549 Sum_probs=20.3
Q ss_pred EEEEeccCcccceeccCCchHHHHHh
Q 019747 259 LTIGVADEHIGFVVGRGGRNIMEISQ 284 (336)
Q Consensus 259 ~~v~vp~~~vg~IIGk~G~~I~~I~~ 284 (336)
.+|.|-...-|.|||++|+.|++|+.
T Consensus 64 i~I~I~t~rPg~vIGkkG~~I~~L~~ 89 (233)
T 3i1m_C 64 IRVTIHTARPGIVIGKKGEDVEKLRK 89 (233)
T ss_dssp BCCEEEESCHHHHHCSTTHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHH
Confidence 45555666778999999999988754
No 127
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=21.69 E-value=72 Score=23.33 Aligned_cols=27 Identities=7% Similarity=0.131 Sum_probs=19.3
Q ss_pred EEEEEee-----HHHHHHHHHHHHHHHHhhcc
Q 019747 84 IIMISGT-----IDEILRAVDLVIDKLLTELH 110 (336)
Q Consensus 84 ~i~I~G~-----~~~v~~A~~~I~~~i~~~~~ 110 (336)
.++|... ..|.+.|++.+.++|.+...
T Consensus 69 ~ivv~~q~~RSQ~~Nr~~Al~rL~~~l~~a~~ 100 (108)
T 2jva_A 69 VIVLKAQQYRTQEQNRADALLRLSELIVNAAK 100 (108)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCcCCHHHHHHHHHHHHHHHHHHHcc
Confidence 4566553 46888999999988877643
No 128
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=20.80 E-value=52 Score=26.40 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=28.9
Q ss_pred eEEEEEeccCcccceeccCCchHHHH-HhHh--------CC---eEEEcc
Q 019747 257 NSLTIGVADEHIGFVVGRGGRNIMEI-SQIS--------GA---RIKVSD 294 (336)
Q Consensus 257 ~~~~v~vp~~~vg~IIGk~G~~I~~I-~~~s--------ga---~I~i~~ 294 (336)
....+.||.++.|.+|| .+|++| ++++ |+ .+.+.+
T Consensus 7 l~~~i~I~P~~~~~~i~---~~I~~~L~~~~~gk~~~~~G~~i~~idi~~ 53 (187)
T 1go3_E 7 IADVVKVPPEEFGKDLK---ETVKKILMEKYEGRLDKDVGFVLSIVDVKD 53 (187)
T ss_dssp EEEEEEECGGGTTSCHH---HHHHHHHHHHHTTCEETTTEEEEEEEEEEE
T ss_pred EEEEEEECHHHhCccHH---HHHHHHHHHHhCCeEcCCccEEEEEEEEee
Confidence 45688999999999999 689995 9999 88 566655
No 129
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=20.66 E-value=65 Score=25.76 Aligned_cols=28 Identities=11% Similarity=-0.020 Sum_probs=24.5
Q ss_pred cEEEEEEEecCccceeecCCChHHHHH-HHHh
Q 019747 34 PTYIRFLVSNPLAGAVIGKGGSTINDF-QSQS 64 (336)
Q Consensus 34 ~~~~~i~ip~~~vg~iIGk~G~~Ik~I-~~~t 64 (336)
++...+.||.++.|.+|| .+|+++ ++++
T Consensus 6 ~l~~~i~I~P~~~~~~i~---~~I~~~L~~~~ 34 (187)
T 1go3_E 6 EIADVVKVPPEEFGKDLK---ETVKKILMEKY 34 (187)
T ss_dssp EEEEEEEECGGGTTSCHH---HHHHHHHHHHH
T ss_pred EEEEEEEECHHHhCccHH---HHHHHHHHHHh
Confidence 356789999999999999 799995 9999
No 130
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=20.56 E-value=2.1e+02 Score=19.59 Aligned_cols=47 Identities=9% Similarity=0.086 Sum_probs=33.3
Q ss_pred chHHHHHhHhC-C--eEEEccCCCCCCCCcceEEEEEcChHhHHHHHHHHHHHHHhhhhc
Q 019747 277 RNIMEISQISG-A--RIKVSDRGDFFSGTSERKVTISGPQRSIRTAESMIMQKVAYASDR 333 (336)
Q Consensus 277 ~~I~~I~~~sg-a--~I~i~~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~~ 333 (336)
+-.|+|++.+- + .|.|... ...-++|+|.... .+..|++.|++.++.
T Consensus 24 EL~kRl~~~fpd~~~~V~Vr~~-------s~n~lsV~g~~k~---dKe~i~eiLqE~we~ 73 (81)
T 1ghh_A 24 ELSRRIQYAFPDNEGHVSVRYA-------AANNLSVIGATKE---DKQRISEILQETWES 73 (81)
T ss_dssp HHHHHHHHHCSSSCCEEEEEEE-------SSCEEEEESCCHH---HHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhCCCCCceEEEeec-------CCCceeecCCChh---HHHHHHHHHHHHHhC
Confidence 45677877774 5 7888662 3677889997664 577777777776653
Done!