Query 019748
Match_columns 336
No_of_seqs 300 out of 1673
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 06:31:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019748.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019748hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cch_B Cyclin A2, cyclin-A; co 100.0 2.4E-47 8.4E-52 352.6 20.9 239 20-281 3-245 (260)
2 3g33_B CCND3 protein; Ser/Thr 100.0 9.5E-47 3.2E-51 356.3 24.7 227 21-252 35-266 (306)
3 2f2c_A Cyclin homolog, V-cycli 100.0 5.1E-46 1.8E-50 342.7 25.1 222 25-252 21-247 (254)
4 1f5q_B Gamma herpesvirus cycli 100.0 9.8E-47 3.4E-51 346.7 19.1 221 21-252 18-241 (252)
5 1g3n_C V-cyclin; cyclin-depend 100.0 7.4E-46 2.5E-50 342.2 22.7 222 25-252 20-247 (257)
6 2b9r_A Human cyclin B1; cell c 100.0 2.6E-46 8.9E-51 347.4 16.8 240 20-282 3-245 (269)
7 2w96_A G1/S-specific cyclin-D1 100.0 1.6E-44 5.4E-49 335.8 25.6 225 23-252 23-256 (271)
8 1w98_B Cyclin E, G1/S-specific 100.0 2.1E-43 7.2E-48 330.1 23.1 218 20-252 14-241 (283)
9 2i53_A Cyclin K; cell cycle, t 100.0 8.9E-34 3E-38 261.2 20.2 206 41-252 25-250 (258)
10 3rgf_B Cyclin-C; protein kinas 100.0 3.2E-32 1.1E-36 254.6 21.6 185 55-252 40-241 (285)
11 2ivx_A Cyclin-T2; transcriptio 100.0 5.9E-32 2E-36 249.0 20.9 189 54-252 27-239 (257)
12 1zp2_A RNA polymerase II holoe 100.0 4.1E-32 1.4E-36 247.0 19.1 183 58-252 28-219 (235)
13 2pk2_A Cyclin-T1, protein TAT; 100.0 2.4E-31 8.2E-36 255.9 13.7 190 53-252 33-246 (358)
14 1jkw_A Cyclin H; cell cycle, c 100.0 6.8E-30 2.3E-34 242.7 22.8 191 55-252 54-260 (323)
15 1c9b_A General transcription f 99.9 1.2E-24 4.2E-29 193.8 19.1 183 56-251 3-187 (207)
16 1ais_B TFB TFIIB, protein (tra 99.9 9.1E-21 3.1E-25 167.8 18.8 183 56-251 7-193 (200)
17 3k7a_M Transcription initiatio 99.6 8.5E-17 2.9E-21 153.9 4.5 180 59-251 127-320 (345)
18 4bbr_M Transcription initiatio 99.2 3.3E-11 1.1E-15 115.0 9.0 180 59-251 127-320 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 98.2 1.2E-05 4E-10 74.1 12.6 106 61-170 77-186 (293)
20 1ais_B TFB TFIIB, protein (tra 95.8 0.05 1.7E-06 46.9 9.7 81 69-154 118-198 (200)
21 1c9b_A General transcription f 94.8 0.13 4.5E-06 44.5 9.3 86 158-251 8-93 (207)
22 4bbr_M Transcription initiatio 92.1 0.45 1.5E-05 44.7 8.5 90 155-252 126-215 (345)
23 3k7a_M Transcription initiatio 87.2 0.26 9E-06 46.3 2.5 88 157-252 128-215 (345)
24 1zp2_A RNA polymerase II holoe 84.3 3.2 0.00011 36.3 8.0 88 159-251 32-125 (235)
25 2ivx_A Cyclin-T2; transcriptio 71.8 27 0.00091 30.6 10.2 76 71-149 158-238 (257)
26 2i53_A Cyclin K; cell cycle, t 69.7 26 0.00091 30.6 9.7 73 75-150 171-250 (258)
27 2b9r_A Human cyclin B1; cell c 68.3 21 0.00073 31.7 8.8 85 160-251 43-129 (269)
28 2w96_A G1/S-specific cyclin-D1 66.3 31 0.0011 30.6 9.5 64 186-251 83-148 (271)
29 1jkw_A Cyclin H; cell cycle, c 66.0 33 0.0011 31.4 9.8 81 161-249 63-152 (323)
30 3rgf_B Cyclin-C; protein kinas 64.5 23 0.00078 31.8 8.3 87 160-251 48-148 (285)
31 2f2c_A Cyclin homolog, V-cycli 63.2 41 0.0014 29.4 9.6 67 183-251 75-143 (254)
32 2cch_B Cyclin A2, cyclin-A; co 60.6 37 0.0012 29.9 8.8 69 75-148 156-225 (260)
33 3o0g_D Cyclin-dependent kinase 60.2 37 0.0013 27.2 7.5 68 59-129 28-108 (149)
34 1g3n_C V-cyclin; cyclin-depend 56.9 32 0.0011 30.2 7.7 67 183-251 74-142 (257)
35 1unl_D Cyclin-dependent kinase 54.8 45 0.0015 28.0 7.5 68 100-171 122-193 (208)
36 3g33_B CCND3 protein; Ser/Thr 53.2 42 0.0015 30.4 8.1 55 195-251 106-162 (306)
37 3h4c_A Transcription factor TF 48.5 1.3E+02 0.0045 25.9 14.1 145 63-217 17-171 (260)
38 1w98_B Cyclin E, G1/S-specific 48.2 66 0.0023 28.6 8.4 53 197-251 88-142 (283)
39 2pk2_A Cyclin-T1, protein TAT; 42.5 39 0.0013 31.5 6.1 56 158-218 41-96 (358)
40 2pmi_B PHO85 cyclin PHO80, ami 30.1 2.7E+02 0.0094 25.1 9.3 87 156-246 75-161 (293)
41 1fs1_B SKP1, cyclin A/CDK2-ass 29.8 1.7E+02 0.0058 23.0 7.2 72 26-119 25-125 (141)
42 2ast_A S-phase kinase-associat 26.7 2.4E+02 0.0083 22.4 8.5 73 51-138 47-149 (159)
43 2wh0_Q Pkcev3, protein kinase 21.6 69 0.0024 18.1 2.3 18 135-152 12-29 (31)
No 1
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=2.4e-47 Score=352.65 Aligned_cols=239 Identities=23% Similarity=0.287 Sum_probs=212.1
Q ss_pred ccccHHHHHHHHHHHhhccCCCcchhhhccCCCCCHHHHHHHHHHHHhh--hcccChhHHHHHHHHHHHhhhccccCCCC
Q 019748 20 DEDSTETILESLFLVESDHMPSKSYIKTLKGRDLDNSLRSRAVSSILQF--SCKFDPFLSYLAVNYMDRYLSSQEMPQPK 97 (336)
Q Consensus 20 ~~~y~~ei~~~l~~~E~~~~p~~~yl~~~~~~~i~~~~R~~~vdWi~~v--~~~~~~~T~~lAv~~lDRfLs~~~v~~~~ 97 (336)
+.+|++|||.+|++.|.++.|.++|++. ++++++.||.++||||++| +++++++|+++||+|||||++...+++.+
T Consensus 3 ~~eY~~di~~~l~~~E~~~~p~~~y~~~--q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~ 80 (260)
T 2cch_B 3 VPDYHEDIHTYLREMEVKCKPKVGYMKK--QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK 80 (260)
T ss_dssp CCTTHHHHHHHHHHHHHHTCCCTTGGGG--CSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHH
T ss_pred hHhHHHHHHHHHHHHHhhcCCCchhhhc--CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHH
Confidence 5789999999999999999999999995 4689999999999999999 68999999999999999999999998877
Q ss_pred cchhHHHHHHHHHHHHHhhccCcc-hhhhhhhcCCccCHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHccCCChHH
Q 019748 98 PWKLRLLAVSCFSLAAKMRQIEFS-YTQFQADGGLIFDTQTIQRMECLILGALKWRMRSITPFTFLSFFISLFKLKDLTV 176 (336)
Q Consensus 98 ~~~lqLlavaCL~lAsK~eE~~~p-l~dl~~~~~~~~~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~~~~~~~~~ 176 (336)
+||+|+|||+||+|+||..+| +.||+......|++++|.+||+.||++|+|++++|||++|+.+|+..++.++.
T Consensus 81 ---lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~-- 155 (260)
T 2cch_B 81 ---LQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANC-- 155 (260)
T ss_dssp ---HHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCH--
T ss_pred ---HhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChH--
Confidence 999999999999999999877 89997666568999999999999999999999999999999999999887553
Q ss_pred HHHHHHHHHHHHHHHhcchh-hhCccHHHHHHHHHHHHHHHhCCCchhhhHHhchhcCCCCHhhHHHHHHHHHHhhcccc
Q 019748 177 QRALKTRASEVIFQAQIDIK-LIEFKPSIIAASALLFASRELFPLQFHCFRKAISNCPYVNKENLLRCYNAMQDTSMDDE 255 (336)
Q Consensus 177 ~~~l~~~~~~l~~~~l~d~~-~l~~~PS~iAaAal~~a~~~l~~~~~~~~~~~L~~~~~~~~~~l~~C~~~l~~l~~~~~ 255 (336)
.+...+.++++.++.++. |++|+||.||+|||++|+..++. +.|.+.|..++|+++++|.+|++.|.++..
T Consensus 156 --~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~---~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~--- 227 (260)
T 2cch_B 156 --KVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG---QSWPESLIRKTGYTLESLKPCLMDLHQTYL--- 227 (260)
T ss_dssp --HHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS---CCSCHHHHHHHCCCHHHHHHHHHHHHHHHH---
T ss_pred --HHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC---CcchHHHHHHhCcCHHHHHHHHHHHHHHHH---
Confidence 344566777778888999 99999999999999999998864 457788999999999999999999999876
Q ss_pred cccccccCCCCCCcccccccccccCC
Q 019748 256 YESEIDLVSSSYTPVNVLDCRVSSSG 281 (336)
Q Consensus 256 ~~~~~~~~~~p~sp~~vld~~~~s~~ 281 (336)
..+.++...+..+|++.+
T Consensus 228 --------~~~~~~~~~i~~Ky~~~~ 245 (260)
T 2cch_B 228 --------KAPQHAQQSIREKYKNSK 245 (260)
T ss_dssp --------HGGGSSCCHHHHHHTSGG
T ss_pred --------hcCCcchHHHHHHHCccc
Confidence 123446667777787655
No 2
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=9.5e-47 Score=356.32 Aligned_cols=227 Identities=22% Similarity=0.350 Sum_probs=203.5
Q ss_pred cccHHHHHHHHHHHhhccCCCcchhhhccCCCCCHHHHHHHHHHHHhh--hcccChhHHHHHHHHHHHhhhccccCCCCc
Q 019748 21 EDSTETILESLFLVESDHMPSKSYIKTLKGRDLDNSLRSRAVSSILQF--SCKFDPFLSYLAVNYMDRYLSSQEMPQPKP 98 (336)
Q Consensus 21 ~~y~~ei~~~l~~~E~~~~p~~~yl~~~~~~~i~~~~R~~~vdWi~~v--~~~~~~~T~~lAv~~lDRfLs~~~v~~~~~ 98 (336)
=.|++|||++|+++|.++.|.++|++..| +++++.||.++|+||++| .+++.++|+++||+||||||+...+.+.+
T Consensus 35 l~~~~~i~~~l~~~E~~~~p~~~y~~~~q-~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~- 112 (306)
T 3g33_B 35 LLGDQRVLQSLLRLEERYVPRASYFQCVQ-REIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQ- 112 (306)
T ss_dssp --CHHHHHHHHHHHGGGGSCSSCCTTTST-TTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGGG-
T ss_pred ccchHHHHHHHHHHHHHhCCCcHHHhhcC-ccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHHH-
Confidence 35899999999999999999999998755 479999999999999999 68999999999999999999999887666
Q ss_pred chhHHHHHHHHHHHHHhhccCcc-hhhhhhhcCCccCHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHccCCChHHH
Q 019748 99 WKLRLLAVSCFSLAAKMRQIEFS-YTQFQADGGLIFDTQTIQRMECLILGALKWRMRSITPFTFLSFFISLFKLKDLTVQ 177 (336)
Q Consensus 99 ~~lqLlavaCL~lAsK~eE~~~p-l~dl~~~~~~~~~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~~~~~~~~~~ 177 (336)
+||+|+|||+||+|+||..+| +.+|+....+.|++++|++||+.||++|+|++++|||++||.+|++.++..... .
T Consensus 113 --lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~-~ 189 (306)
T 3g33_B 113 --LQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDR-Q 189 (306)
T ss_dssp --HHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTT-H
T ss_pred --HHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhH-H
Confidence 999999999999999999987 889977766789999999999999999999999999999999999998765432 2
Q ss_pred HHHHHHHHHHHHHHhcchhhhCccHHHHHHHHHHHHHHHhCCC--chhhhHHhchhcCCCCHhhHHHHHHHHHHhhc
Q 019748 178 RALKTRASEVIFQAQIDIKLIEFKPSIIAASALLFASRELFPL--QFHCFRKAISNCPYVNKENLLRCYNAMQDTSM 252 (336)
Q Consensus 178 ~~l~~~~~~l~~~~l~d~~~l~~~PS~iAaAal~~a~~~l~~~--~~~~~~~~L~~~~~~~~~~l~~C~~~l~~l~~ 252 (336)
..+...+.+++..++.++.|+.|+||.||||||++|+..++.. +...|.+.|..++|+++++|.+|++.|.++..
T Consensus 190 ~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~l~~ 266 (306)
T 3g33_B 190 ALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALR 266 (306)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3566778888999999999999999999999999999998742 33567888999999999999999999999886
No 3
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=5.1e-46 Score=342.68 Aligned_cols=222 Identities=18% Similarity=0.249 Sum_probs=197.8
Q ss_pred HHHHHHHHHHhhccCCCcchhhhccCCCCCHHHHHHHHHHHHhh--hcccChhHHHHHHHHHHHhhhccccCCCCcchhH
Q 019748 25 ETILESLFLVESDHMPSKSYIKTLKGRDLDNSLRSRAVSSILQF--SCKFDPFLSYLAVNYMDRYLSSQEMPQPKPWKLR 102 (336)
Q Consensus 25 ~ei~~~l~~~E~~~~p~~~yl~~~~~~~i~~~~R~~~vdWi~~v--~~~~~~~T~~lAv~~lDRfLs~~~v~~~~~~~lq 102 (336)
+|||. |+++|.++.|+++|++..| +++++.||.++||||++| ++++.++|+++||+|+|||++...+++.+ +|
T Consensus 21 ~~i~~-l~~~E~~~~p~~~y~~~~q-~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~~---lq 95 (254)
T 2f2c_A 21 PRVLN-NLKLRELLLPKFTSLWEIQ-TEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKT---LQ 95 (254)
T ss_dssp HHHHH-HHHHHHTTSCCCSSTTTTC-SSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTT---HH
T ss_pred HHHHH-HHHHHHhhCCCchhhhhcC-ccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHHH---cc
Confidence 89999 9999999999999997544 579999999999999999 68999999999999999999999999888 99
Q ss_pred HHHHHHHHHHHHhhccCcc-hhhhhhhcCCccCHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHccCCChHHHHHHH
Q 019748 103 LLAVSCFSLAAKMRQIEFS-YTQFQADGGLIFDTQTIQRMECLILGALKWRMRSITPFTFLSFFISLFKLKDLTVQRALK 181 (336)
Q Consensus 103 LlavaCL~lAsK~eE~~~p-l~dl~~~~~~~~~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~~~~~~~~~~~~l~ 181 (336)
|+|+|||+||+|+||..+| +.||+....+.|++++|++||+.||++|+|++++|||++|+.+|++.++.+... ...+.
T Consensus 96 Lv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~-~~~~~ 174 (254)
T 2f2c_A 96 KIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDL-WPQLY 174 (254)
T ss_dssp HHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGG-HHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhh-HHHHH
Confidence 9999999999999999888 899977666689999999999999999999999999999999999998876433 33556
Q ss_pred HHHHHHHHHHhcchhhhCccHHHHHHHHHHHHHHHhCCC--chhhhHHhchhcCCCCHhhHHHHHHHHHHhhc
Q 019748 182 TRASEVIFQAQIDIKLIEFKPSIIAASALLFASRELFPL--QFHCFRKAISNCPYVNKENLLRCYNAMQDTSM 252 (336)
Q Consensus 182 ~~~~~l~~~~l~d~~~l~~~PS~iAaAal~~a~~~l~~~--~~~~~~~~L~~~~~~~~~~l~~C~~~l~~l~~ 252 (336)
..+.++++.++.++.|+.|+||.||||||++|+...+.. .|..|.+.|..++|+++++|.+|++.|.++..
T Consensus 175 ~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~~~~ 247 (254)
T 2f2c_A 175 EAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNFSTNTVRTVKDQVSEAFS 247 (254)
T ss_dssp HHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 778889999999999999999999999999999986322 23345888999999999999999999999875
No 4
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=9.8e-47 Score=346.75 Aligned_cols=221 Identities=15% Similarity=0.188 Sum_probs=191.1
Q ss_pred cccHHHHHHHHHHHhhccCCCcchhhhccCCCCCHHHHHHHHHHHHhh--hcccChhHHHHHHHHHHHhhhccccCCCCc
Q 019748 21 EDSTETILESLFLVESDHMPSKSYIKTLKGRDLDNSLRSRAVSSILQF--SCKFDPFLSYLAVNYMDRYLSSQEMPQPKP 98 (336)
Q Consensus 21 ~~y~~ei~~~l~~~E~~~~p~~~yl~~~~~~~i~~~~R~~~vdWi~~v--~~~~~~~T~~lAv~~lDRfLs~~~v~~~~~ 98 (336)
+...++||.+|+++|.++.|. ..| +++++.||.++||||++| ++++.++|+|+||+|+||||+...+++.+
T Consensus 18 ~l~~d~i~~~l~~~E~~~~p~-----~~q-~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~~- 90 (252)
T 1f5q_B 18 EDCRQMIYRSEREHDARMVGV-----NVD-QHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDREN- 90 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHSSS-----SHH-HHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGGG-
T ss_pred HHhHHHHHHHHHHHHHHhCcC-----ccC-CCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHHH-
Confidence 456779999999999999882 122 357889999999999999 68999999999999999999999988777
Q ss_pred chhHHHHHHHHHHHHHhhccCcc-hhhhhhhcCCccCHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHccCCChHHH
Q 019748 99 WKLRLLAVSCFSLAAKMRQIEFS-YTQFQADGGLIFDTQTIQRMECLILGALKWRMRSITPFTFLSFFISLFKLKDLTVQ 177 (336)
Q Consensus 99 ~~lqLlavaCL~lAsK~eE~~~p-l~dl~~~~~~~~~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~~~~~~~~~~ 177 (336)
+||+|+|||+||+|+||..+| +.+|+....+.|++++|++||+.||++|+|++++|||++|+++|++.++.+... .
T Consensus 91 --lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~~-~ 167 (252)
T 1f5q_B 91 --YQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPRED-Y 167 (252)
T ss_dssp --HHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHH-H
T ss_pred --HHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcch-H
Confidence 999999999999999999987 889977666789999999999999999999999999999999999998765432 2
Q ss_pred HHHHHHHHHHHHHHhcchhhhCccHHHHHHHHHHHHHHHhCCCchhhhHHhchhcCCCCHhhHHHHHHHHHHhhc
Q 019748 178 RALKTRASEVIFQAQIDIKLIEFKPSIIAASALLFASRELFPLQFHCFRKAISNCPYVNKENLLRCYNAMQDTSM 252 (336)
Q Consensus 178 ~~l~~~~~~l~~~~l~d~~~l~~~PS~iAaAal~~a~~~l~~~~~~~~~~~L~~~~~~~~~~l~~C~~~l~~l~~ 252 (336)
..+...+.++++.++.|+.|+.|+||+||+||+.+++.... .+...|.+.|..++|+++++|.+|++.|.++..
T Consensus 168 ~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l~~~~-~~~~~~~~~L~~~t~~~~~~l~~C~~~i~~~l~ 241 (252)
T 1f5q_B 168 LNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTMNQKY-DYYENRIDGVCKSLYITKEELHQCCDLVDIAIV 241 (252)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHhccCC-CchhhHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 35667888889999999999999999999999766653221 123456778888999999999999999999875
No 5
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=7.4e-46 Score=342.18 Aligned_cols=222 Identities=15% Similarity=0.189 Sum_probs=199.2
Q ss_pred HHHHHHHHHHhhccCCCcchhhhccCCCCCHHHHHHHHHHHHhh--hcccChhHHHHHHHHHHHhhhccccCCCCcchhH
Q 019748 25 ETILESLFLVESDHMPSKSYIKTLKGRDLDNSLRSRAVSSILQF--SCKFDPFLSYLAVNYMDRYLSSQEMPQPKPWKLR 102 (336)
Q Consensus 25 ~ei~~~l~~~E~~~~p~~~yl~~~~~~~i~~~~R~~~vdWi~~v--~~~~~~~T~~lAv~~lDRfLs~~~v~~~~~~~lq 102 (336)
+||| +|+++|.++.|.++|+...| +++++.||.++||||++| ++++.++|+++||+|||||++...+.+.+ +|
T Consensus 20 ~~i~-~l~~~E~~~~p~~~y~~~~q-~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~~---lq 94 (257)
T 1g3n_C 20 RIFY-NILEIEPRFLTSDSVFGTFQ-QSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEH---FQ 94 (257)
T ss_dssp HHHH-HHHHHGGGGCCCGGGHHHHT-SSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHHH---HH
T ss_pred HHHH-HHHHHHHHhCCChhHHHhcC-ccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHHH---HH
Confidence 8999 99999999999999997544 479999999999999999 68999999999999999999999988777 99
Q ss_pred HHHHHHHHHHHHhhccCcc-hhhhhhhcCCccCHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHccCCChHHHHHHH
Q 019748 103 LLAVSCFSLAAKMRQIEFS-YTQFQADGGLIFDTQTIQRMECLILGALKWRMRSITPFTFLSFFISLFKLKDLTVQRALK 181 (336)
Q Consensus 103 LlavaCL~lAsK~eE~~~p-l~dl~~~~~~~~~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~~~~~~~~~~~~l~ 181 (336)
|+|+|||+||+|+||..+| +.+|+......|++++|++||+.||++|+|++++|||++|+.+|++.++.+... ...+.
T Consensus 95 Lv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~-~~~~~ 173 (257)
T 1g3n_C 95 KTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQH-LDFWH 173 (257)
T ss_dssp HHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTT-HHHHH
T ss_pred HHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhH-HHHHH
Confidence 9999999999999999887 899976666689999999999999999999999999999999999998765432 23456
Q ss_pred HHHHHHHHHHhcchhhhCccHHHHHHHHHHHHHHHhCCC---chhhhHHhchhcCCCCHhhHHHHHHHHHHhhc
Q 019748 182 TRASEVIFQAQIDIKLIEFKPSIIAASALLFASRELFPL---QFHCFRKAISNCPYVNKENLLRCYNAMQDTSM 252 (336)
Q Consensus 182 ~~~~~l~~~~l~d~~~l~~~PS~iAaAal~~a~~~l~~~---~~~~~~~~L~~~~~~~~~~l~~C~~~l~~l~~ 252 (336)
..+.++++.++.++.|+.|+||.||+|||++|+..++.. ..+.|.+.|..++|+++++|.+|++.|.++..
T Consensus 174 ~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~~~i~~l~~ 247 (257)
T 1g3n_C 174 HEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCDVSVLQAAVEQILTSVS 247 (257)
T ss_dssp HHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 678888989999999999999999999999999988632 12568999999999999999999999999876
No 6
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=2.6e-46 Score=347.44 Aligned_cols=240 Identities=19% Similarity=0.272 Sum_probs=210.4
Q ss_pred ccccHHHHHHHHHHHhhccCCCcchhhhccCCCCCHHHHHHHHHHHHhh--hcccChhHHHHHHHHHHHhhhccccCCCC
Q 019748 20 DEDSTETILESLFLVESDHMPSKSYIKTLKGRDLDNSLRSRAVSSILQF--SCKFDPFLSYLAVNYMDRYLSSQEMPQPK 97 (336)
Q Consensus 20 ~~~y~~ei~~~l~~~E~~~~p~~~yl~~~~~~~i~~~~R~~~vdWi~~v--~~~~~~~T~~lAv~~lDRfLs~~~v~~~~ 97 (336)
+.+|++|||++|+++|.++.|+++|++. + ++++.||.++++||.+| .++++++|+++||+|||||++...+++.+
T Consensus 3 ~~eY~~di~~~l~~~E~~~~~~~~y~~~--q-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~ 79 (269)
T 2b9r_A 3 SSEYVKDIYAYLRQLEAAQAVRPKYLLG--R-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKM 79 (269)
T ss_dssp ----CCTTTTTHHHHHHTTCCCTTTTSS--S-SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGG
T ss_pred hHHHHHHHHHHHHHHHHhhCCCcccccC--C-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4688999999999999999999999984 3 79999999999999999 68999999999999999999999998887
Q ss_pred cchhHHHHHHHHHHHHHhhccCcc-hhhhhhhcCCccCHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHccCCChHH
Q 019748 98 PWKLRLLAVSCFSLAAKMRQIEFS-YTQFQADGGLIFDTQTIQRMECLILGALKWRMRSITPFTFLSFFISLFKLKDLTV 176 (336)
Q Consensus 98 ~~~lqLlavaCL~lAsK~eE~~~p-l~dl~~~~~~~~~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~~~~~~~~~ 176 (336)
+||+|+|||+||+|+||..+| +.||+....+.|++++|.+||+.||++|+|++++|||++|+.+|+..++.+ .
T Consensus 80 ---lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~-~-- 153 (269)
T 2b9r_A 80 ---LQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVD-V-- 153 (269)
T ss_dssp ---HHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCC-H--
T ss_pred ---hhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCC-H--
Confidence 999999999999999999887 899977666689999999999999999999999999999999999977653 2
Q ss_pred HHHHHHHHHHHHHHHhcchhhhCccHHHHHHHHHHHHHHHhCCCchhhhHHhchhcCCCCHhhHHHHHHHHHHhhccccc
Q 019748 177 QRALKTRASEVIFQAQIDIKLIEFKPSIIAASALLFASRELFPLQFHCFRKAISNCPYVNKENLLRCYNAMQDTSMDDEY 256 (336)
Q Consensus 177 ~~~l~~~~~~l~~~~l~d~~~l~~~PS~iAaAal~~a~~~l~~~~~~~~~~~L~~~~~~~~~~l~~C~~~l~~l~~~~~~ 256 (336)
.+...+.++++.++.++.|+.|+||.||+|||++|+..++.. .|.+.|..++|+++++|.+|++.|.++...
T Consensus 154 --~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~---~w~~~l~~~tg~~~~~l~~~~~~l~~~~~~--- 225 (269)
T 2b9r_A 154 --EQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNG---EWTPTLQHYLSYTEESLLPVMQHLAKNVVM--- 225 (269)
T ss_dssp --HHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCC---CSCTTHHHHSCCCSSTTTTHHHHHHHHHHH---
T ss_pred --HHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCC---CCCHHHHHHHCCCHHHHHHHHHHHHHHHHH---
Confidence 344667888899999999999999999999999999999853 478889999999999999999999997751
Q ss_pred ccccccCCCCCCcccccccccccCCC
Q 019748 257 ESEIDLVSSSYTPVNVLDCRVSSSGS 282 (336)
Q Consensus 257 ~~~~~~~~~p~sp~~vld~~~~s~~s 282 (336)
...+.++...+..+|++.+-
T Consensus 226 ------~~~~~~~~~ai~~Ky~~~~~ 245 (269)
T 2b9r_A 226 ------VNQGLTKHMTVKNKYATSKH 245 (269)
T ss_dssp ------TTTSCCSCCHHHHHTTSGGG
T ss_pred ------hcCCCcchHHHHHHhcchhh
Confidence 12245677888888877663
No 7
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=1.6e-44 Score=335.75 Aligned_cols=225 Identities=23% Similarity=0.386 Sum_probs=200.1
Q ss_pred cHHHHHHHHHHHhhccCCCcchhhhccCCCCCHHHHHHHHHHHHhh--hcccChhHHHHHHHHHHHhhhccccCCCCcch
Q 019748 23 STETILESLFLVESDHMPSKSYIKTLKGRDLDNSLRSRAVSSILQF--SCKFDPFLSYLAVNYMDRYLSSQEMPQPKPWK 100 (336)
Q Consensus 23 y~~ei~~~l~~~E~~~~p~~~yl~~~~~~~i~~~~R~~~vdWi~~v--~~~~~~~T~~lAv~~lDRfLs~~~v~~~~~~~ 100 (336)
.++||+.+|+++|.++.|+++|+...| +++++.||.++|+||++| ++++.++|+++||+|||||++...+++.+
T Consensus 23 ~~~~i~~~l~~~E~~~~p~~~y~~~~q-~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~--- 98 (271)
T 2w96_A 23 LNDRVLRAMLKAEETCAPSVSYFKCVQ-KEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSR--- 98 (271)
T ss_dssp --CHHHHHHHHHHHHTCCCTTHHHHTC-SSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTTT---
T ss_pred cHHHHHHHHHHHHHHhCCCchHHHhcC-CcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHHH---
Confidence 367999999999999999999998765 579999999999999999 68999999999999999999999999888
Q ss_pred hHHHHHHHHHHHHHhhccCcc-hhhhhhhcCCccCHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHccCCChHHHHH
Q 019748 101 LRLLAVSCFSLAAKMRQIEFS-YTQFQADGGLIFDTQTIQRMECLILGALKWRMRSITPFTFLSFFISLFKLKDLTVQRA 179 (336)
Q Consensus 101 lqLlavaCL~lAsK~eE~~~p-l~dl~~~~~~~~~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~~~~~~~~~~~~ 179 (336)
+||+|+|||+||+|+||..+| +.+|+....+.|++++|.+||+.||++|+|++++|||++|+.+|++.++...+ ....
T Consensus 99 lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~-~~~~ 177 (271)
T 2w96_A 99 LQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEE-NKQI 177 (271)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCHH-HHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCch-HHHH
Confidence 999999999999999999776 88997766668999999999999999999999999999999999999876533 2334
Q ss_pred HHHHHHHHHHHHhcchhhhCccHHHHHHHHHHHHHHHhC------CCchhhhHHhchhcCCCCHhhHHHHHHHHHHhhc
Q 019748 180 LKTRASEVIFQAQIDIKLIEFKPSIIAASALLFASRELF------PLQFHCFRKAISNCPYVNKENLLRCYNAMQDTSM 252 (336)
Q Consensus 180 l~~~~~~l~~~~l~d~~~l~~~PS~iAaAal~~a~~~l~------~~~~~~~~~~L~~~~~~~~~~l~~C~~~l~~l~~ 252 (336)
+...+..++..++.|+.|+.|+||.||+|||++|+..++ +.+.+.|.+.|..++|+++++|.+|++.|.++..
T Consensus 178 ~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c~~~i~~l~~ 256 (271)
T 2w96_A 178 IRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQIEALLE 256 (271)
T ss_dssp HHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 566788888888999999999999999999999998774 2233456778999999999999999999999876
No 8
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2.1e-43 Score=330.11 Aligned_cols=218 Identities=22% Similarity=0.341 Sum_probs=189.9
Q ss_pred ccccHHHHHHHHHHHhhccCCCcchhhhccCCCCCHHHHHHHHHHHHhh--hcccChhHHHHHHHHHHHhhhc-cccCCC
Q 019748 20 DEDSTETILESLFLVESDHMPSKSYIKTLKGRDLDNSLRSRAVSSILQF--SCKFDPFLSYLAVNYMDRYLSS-QEMPQP 96 (336)
Q Consensus 20 ~~~y~~ei~~~l~~~E~~~~p~~~yl~~~~~~~i~~~~R~~~vdWi~~v--~~~~~~~T~~lAv~~lDRfLs~-~~v~~~ 96 (336)
..+|.+|||.+|+++|.++.|.++|++. ++++++.||.++|+||++| ++++.++|+++||+|||||++. ..+.+.
T Consensus 14 ~~~y~~~i~~~l~~~E~~~~~~~~y~~~--q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~ 91 (283)
T 1w98_B 14 SWANREEVWKIMLNKEKTYLRDQHFLEQ--HPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKT 91 (283)
T ss_dssp SSSCHHHHHHHHHHHTTTSCCCTTGGGG--CTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGG
T ss_pred hhcCHHHHHHHHHHHHHHhCCCchhhcc--CCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHH
Confidence 3679999999999999999999999984 5689999999999999999 6899999999999999999998 467655
Q ss_pred CcchhHHHHHHHHHHHHHhhccCcc-hhhhhhhcCCccCHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHccCCChH
Q 019748 97 KPWKLRLLAVSCFSLAAKMRQIEFS-YTQFQADGGLIFDTQTIQRMECLILGALKWRMRSITPFTFLSFFISLFKLKDLT 175 (336)
Q Consensus 97 ~~~~lqLlavaCL~lAsK~eE~~~p-l~dl~~~~~~~~~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~~~~~~~~ 175 (336)
+ +||+|+|||+||+|+||..+| +.+|+....+.|++++|.+||+.||++|+|++++|||++|+.+|++.++.++..
T Consensus 92 ~---lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~~ 168 (283)
T 1w98_B 92 L---LQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLH 168 (283)
T ss_dssp G---HHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSSC
T ss_pred H---HHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCchh
Confidence 5 999999999999999999888 899976666689999999999999999999999999999999999987654321
Q ss_pred ------HHHHHHHHHHHHHHHHhcchhhhCccHHHHHHHHHHHHHHHhCCCchhhhHHhchhcCCCCHhhHHHHHHHHHH
Q 019748 176 ------VQRALKTRASEVIFQAQIDIKLIEFKPSIIAASALLFASRELFPLQFHCFRKAISNCPYVNKENLLRCYNAMQD 249 (336)
Q Consensus 176 ------~~~~l~~~~~~l~~~~l~d~~~l~~~PS~iAaAal~~a~~~l~~~~~~~~~~~L~~~~~~~~~~l~~C~~~l~~ 249 (336)
........+.++++.++.|+.|++|+||.||||||++|+ |.+.+..++|+++++|.+|++.|..
T Consensus 169 ~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~----------~~~~l~~~tg~~~~~i~~c~~~l~~ 238 (283)
T 1w98_B 169 EVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFS----------SSELMQKVSGYQWCDIENCVKWMVP 238 (283)
T ss_dssp CSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTS----------CHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHH----------ChHHHHHHhCCCHHHHHHHHHHHHH
Confidence 001122345678888889999999999999999999885 3456778899999999999999998
Q ss_pred hhc
Q 019748 250 TSM 252 (336)
Q Consensus 250 l~~ 252 (336)
++.
T Consensus 239 ~~~ 241 (283)
T 1w98_B 239 FAM 241 (283)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
No 9
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=8.9e-34 Score=261.18 Aligned_cols=206 Identities=15% Similarity=0.175 Sum_probs=169.6
Q ss_pred CcchhhhccCCCCCHHHHHHHHHHHHhh--hcccChhHHHHHHHHHHHhhhccccCCCCcchhHHHHHHHHHHHHHhhcc
Q 019748 41 SKSYIKTLKGRDLDNSLRSRAVSSILQF--SCKFDPFLSYLAVNYMDRYLSSQEMPQPKPWKLRLLAVSCFSLAAKMRQI 118 (336)
Q Consensus 41 ~~~yl~~~~~~~i~~~~R~~~vdWi~~v--~~~~~~~T~~lAv~~lDRfLs~~~v~~~~~~~lqLlavaCL~lAsK~eE~ 118 (336)
.|++.+.++ ++....+|..+++||.++ .++++++|+++|++|||||++...+.+.+ +|++|+|||+||+|+||.
T Consensus 25 ~ps~~~~~~-~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~---~qlv~~acL~lA~K~eE~ 100 (258)
T 2i53_A 25 TPSQLEGLD-PATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFP---RYVTGACCLFLAGKVEET 100 (258)
T ss_dssp CHHHHTTCC-HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSC---HHHHHHHHHHHHHHHTTC
T ss_pred CchhhcCCC-HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcC---HHHHHHHHHHHHHccccc
Confidence 345554432 346678999999999999 68999999999999999999999998888 999999999999999997
Q ss_pred Ccchhhhhhhc-----CCcc------CHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHccCCChHHHHHHHHHHHHH
Q 019748 119 EFSYTQFQADG-----GLIF------DTQTIQRMECLILGALKWRMRSITPFTFLSFFISLFKLKDLTVQRALKTRASEV 187 (336)
Q Consensus 119 ~~pl~dl~~~~-----~~~~------~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~~~~~~~~~~~~l~~~~~~l 187 (336)
.+++.||+... ...| ++++|++||+.||++|+|+++++||+.|+..|++.++.+.. ....+...+.++
T Consensus 101 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~-~~~~~~~~A~~l 179 (258)
T 2i53_A 101 PKKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKN-KIQKLVQMAWTF 179 (258)
T ss_dssp CCCHHHHHHHHHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHH-HHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcc-hHHHHHHHHHHH
Confidence 54588885321 1123 48899999999999999999999999999999999876532 234678889999
Q ss_pred HHHHhcchhhhCccHHHHHHHHHHHHHHHhCCCchhhhHHhc------hh-cCCCCHhhHHHHHHHHHHhhc
Q 019748 188 IFQAQIDIKLIEFKPSIIAASALLFASRELFPLQFHCFRKAI------SN-CPYVNKENLLRCYNAMQDTSM 252 (336)
Q Consensus 188 ~~~~l~d~~~l~~~PS~iAaAal~~a~~~l~~~~~~~~~~~L------~~-~~~~~~~~l~~C~~~l~~l~~ 252 (336)
+..++.++.++.|+||.||+|||++|...++.. .+.|.... .. ++|+++++|.+|++.|.++..
T Consensus 180 ~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~-~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 180 VNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFE-IQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYS 250 (258)
T ss_dssp HHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCC-GGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHcCCchhccChHHHHHHHHHHHHHHhCCC-CCccccCCCcccHHHHhccCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999988642 22232211 11 369999999999999999876
No 10
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.2e-32 Score=254.62 Aligned_cols=185 Identities=16% Similarity=0.126 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHhh--hcccChhHHHHHHHHHHHhhhccccCCCCcchhHHHHHHHHHHHHHhhccCcc-hhhhhh----
Q 019748 55 NSLRSRAVSSILQF--SCKFDPFLSYLAVNYMDRYLSSQEMPQPKPWKLRLLAVSCFSLAAKMRQIEFS-YTQFQA---- 127 (336)
Q Consensus 55 ~~~R~~~vdWi~~v--~~~~~~~T~~lAv~~lDRfLs~~~v~~~~~~~lqLlavaCL~lAsK~eE~~~p-l~dl~~---- 127 (336)
.++|..+++||.++ .+++.++|+++|++|||||++...+.+.+ +|++|+|||+||+|+||..+| +.|++.
T Consensus 40 ~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~---~~lva~acLfLA~K~EE~~~~~~~di~~~~~~ 116 (285)
T 3rgf_B 40 WKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSID---PVLMAPTCVFLASKVEEFGVVSNTRLIAAATS 116 (285)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSC---HHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcC---HHHHHHHHHHHHHhhhccccccHHHHHHHHHH
Confidence 46899999999999 68999999999999999999999998888 999999999999999999987 777743
Q ss_pred ----------hcCCccCHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHhcchhh
Q 019748 128 ----------DGGLIFDTQTIQRMECLILGALKWRMRSITPFTFLSFFISLFKLKDLTVQRALKTRASEVIFQAQIDIKL 197 (336)
Q Consensus 128 ----------~~~~~~~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~~~~~~~~~~~~l~~~~~~l~~~~l~d~~~ 197 (336)
...+.+++++|++||+.||++|+|++.++||+.||..|++.++.. ..+...+.+++..++.+..+
T Consensus 117 ~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~-----~~~~~~A~~~l~~sl~t~~~ 191 (285)
T 3rgf_B 117 VLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQE-----DMLLPLAWRIVNDTYRTDLC 191 (285)
T ss_dssp HHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCH-----HHHHHHHHHHHHHHTTSSHH
T ss_pred HHcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCCC-----HHHHHHHHHHHHHHHccChh
Confidence 123568999999999999999999999999999999999998752 35678889999999999999
Q ss_pred hCccHHHHHHHHHHHHHHHhCCCchhhhHHhchhcCCCCHhhHHHHHHHHHHhhc
Q 019748 198 IEFKPSIIAASALLFASRELFPLQFHCFRKAISNCPYVNKENLLRCYNAMQDTSM 252 (336)
Q Consensus 198 l~~~PS~iAaAal~~a~~~l~~~~~~~~~~~L~~~~~~~~~~l~~C~~~l~~l~~ 252 (336)
+.|+||.||+|||++|...++.... .|.. ..|++.++|.+|++.|.++..
T Consensus 192 l~~~Ps~IAaAaiylA~~~~~~~~~-~W~~----~~~~~~~~l~~~~~~il~ly~ 241 (285)
T 3rgf_B 192 LLYPPFMIALACLHVACVVQQKDAR-QWFA----ELSVDMEKILEIIRVILKLYE 241 (285)
T ss_dssp HHSCHHHHHHHHHHHHHHHTTCCCH-HHHH----TSCSCHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHcCCChh-hHHH----HHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999998875433 3433 259999999999999999875
No 11
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=5.9e-32 Score=249.03 Aligned_cols=189 Identities=15% Similarity=0.150 Sum_probs=157.9
Q ss_pred CHHHHHHHHHHHHhh--hcccChhHHHHHHHHHHHhhhccccCCCCcchhHHHHHHHHHHHHHhhccCcchhhhhhhc--
Q 019748 54 DNSLRSRAVSSILQF--SCKFDPFLSYLAVNYMDRYLSSQEMPQPKPWKLRLLAVSCFSLAAKMRQIEFSYTQFQADG-- 129 (336)
Q Consensus 54 ~~~~R~~~vdWi~~v--~~~~~~~T~~lAv~~lDRfLs~~~v~~~~~~~lqLlavaCL~lAsK~eE~~~pl~dl~~~~-- 129 (336)
...+|..+++||.++ .++++++|+++|++|||||++...+.+.+ +|++|+|||+||+|+||..+.+.|++...
T Consensus 27 e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~---~qlv~~acL~lA~K~EE~p~~l~d~~~~~~~ 103 (257)
T 2ivx_A 27 ELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFN---KNIISSTALFLAAKVEEQARKLEHVIKVAHA 103 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSC---HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhC---HHHHHHHHHHHHhccccCCcCHHHHHHHHHH
Confidence 357999999999999 68999999999999999999999998888 99999999999999999944488884211
Q ss_pred ------------CCccC--HHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHhc-c
Q 019748 130 ------------GLIFD--TQTIQRMECLILGALKWRMRSITPFTFLSFFISLFKLKDLTVQRALKTRASEVIFQAQI-D 194 (336)
Q Consensus 130 ------------~~~~~--~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~~~~~~~~~~~~l~~~~~~l~~~~l~-d 194 (336)
+..|+ +++|++||+.||++|+|+++++||+.|+..|++.++.+ ..+...+.+++..++. +
T Consensus 104 ~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~-----~~~~~~A~~~~~~sl~~~ 178 (257)
T 2ivx_A 104 CLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRAS-----KDLAQTSYFMATNSLHLT 178 (257)
T ss_dssp HHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCC-----HHHHHHHHHHHHHHHHHC
T ss_pred HhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCC-----cHHHHHHHHHHHhhhhcc
Confidence 12344 99999999999999999999999999999999998764 2455677888877774 4
Q ss_pred hhhhCccHHHHHHHHHHHHHHHhCCC-----chhhhHHhchhcCCCCHhhHHHHHHHHHHhhc
Q 019748 195 IKLIEFKPSIIAASALLFASRELFPL-----QFHCFRKAISNCPYVNKENLLRCYNAMQDTSM 252 (336)
Q Consensus 195 ~~~l~~~PS~iAaAal~~a~~~l~~~-----~~~~~~~~L~~~~~~~~~~l~~C~~~l~~l~~ 252 (336)
..++.|+||.||+|||++|...++.. ....|...+ ..|+++++|.+|++.|.++..
T Consensus 179 ~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~--~~~~~~~~l~~~~~~i~~~~~ 239 (257)
T 2ivx_A 179 TFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYV--DPTVTLELLDELTHEFLQILE 239 (257)
T ss_dssp CGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGT--CSSCCHHHHHHHHHHHHHHHH
T ss_pred cHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHh--CCCCCHHHHHHHHHHHHHHHH
Confidence 45899999999999999999988621 112354433 258999999999999999876
No 12
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.1e-32 Score=247.02 Aligned_cols=183 Identities=13% Similarity=0.124 Sum_probs=160.7
Q ss_pred HHHHHHHHHhh--hcccChhHHHHHHHHHHHhhhccccCC-CCcchhHHHHHHHHHHHHHhhccCcchhhhhhhc-----
Q 019748 58 RSRAVSSILQF--SCKFDPFLSYLAVNYMDRYLSSQEMPQ-PKPWKLRLLAVSCFSLAAKMRQIEFSYTQFQADG----- 129 (336)
Q Consensus 58 R~~~vdWi~~v--~~~~~~~T~~lAv~~lDRfLs~~~v~~-~~~~~lqLlavaCL~lAsK~eE~~~pl~dl~~~~----- 129 (336)
|..+++||.++ .++++++|+++|++|||||++...+.+ .+ +|++|+|||+||+|+||..+++.||+...
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~---~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~ 104 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFS---LEALVATCIYLSCKVEECPVHIRTICNEANDLWS 104 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCC---HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccC---HHHHHHHHHHHHhccccCcccHHHHHHHHHHHcc
Confidence 99999999999 689999999999999999999999988 77 99999999999999999766688985432
Q ss_pred -CCccCHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHhcchhhhCccHHHHHHH
Q 019748 130 -GLIFDTQTIQRMECLILGALKWRMRSITPFTFLSFFISLFKLKDLTVQRALKTRASEVIFQAQIDIKLIEFKPSIIAAS 208 (336)
Q Consensus 130 -~~~~~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~~~~~~~~~~~~l~~~~~~l~~~~l~d~~~l~~~PS~iAaA 208 (336)
.+.+++++|.+||+.||++|+|++.++||+.||..|++.++.. . .+...+.+++..++.+..++.|+||.||+|
T Consensus 105 ~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~-~----~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaA 179 (235)
T 1zp2_A 105 LKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIIN-Q----KQLEFAWSIVNDSYASSLCLMAHPHQLAYA 179 (235)
T ss_dssp CSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSC-H----HHHHHHHHHHHHHTTTTGGGTSCHHHHHHH
T ss_pred chhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCC-H----HHHHHHHHHHHHHHcCCchhccCHHHHHHH
Confidence 2468999999999999999999999999999999999976543 2 456788999999999999999999999999
Q ss_pred HHHHHHHHhCCCchhhhHHhchhcCCCCHhhHHHHHHHHHHhhc
Q 019748 209 ALLFASRELFPLQFHCFRKAISNCPYVNKENLLRCYNAMQDTSM 252 (336)
Q Consensus 209 al~~a~~~l~~~~~~~~~~~L~~~~~~~~~~l~~C~~~l~~l~~ 252 (336)
||++|...++. ..+.|...+. |+++++|.+|++.|.++..
T Consensus 180 ai~lA~~~~~~-~~~~~~~~~~---~~~~~~i~~~~~~i~~ly~ 219 (235)
T 1zp2_A 180 ALLISCCNDEN-TIPKLLDLIK---STDAFKVILCVQRIISIYY 219 (235)
T ss_dssp HHHHHHTSCTT-HHHHHHHHCC---HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCC-CCCCCcchhh---cCCHHHHHHHHHHHHHHHh
Confidence 99999988763 2333444443 9999999999999999876
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.97 E-value=2.4e-31 Score=255.89 Aligned_cols=190 Identities=15% Similarity=0.116 Sum_probs=158.2
Q ss_pred CCHHHHHHHHHHHHhh--hcccChhHHHHHHHHHHHhhhccccCCCCcchhHHHHHHHHHHHHHhhccCcchhhhhhh--
Q 019748 53 LDNSLRSRAVSSILQF--SCKFDPFLSYLAVNYMDRYLSSQEMPQPKPWKLRLLAVSCFSLAAKMRQIEFSYTQFQAD-- 128 (336)
Q Consensus 53 i~~~~R~~~vdWi~~v--~~~~~~~T~~lAv~~lDRfLs~~~v~~~~~~~lqLlavaCL~lAsK~eE~~~pl~dl~~~-- 128 (336)
....+|..+++||.+| .+++.++|+++|++|||||++...+.+.+ +||+|+||||||+|+||..+++.||+..
T Consensus 33 ~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~---~qlva~acLfLA~K~EE~p~~l~d~v~v~~ 109 (358)
T 2pk2_A 33 KELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFP---GNSVAPAALFLAAKVEEQPKKLEHVIKVAH 109 (358)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSC---HHHHHHHHHHHHHHHTTCCCCHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccccc---HHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 3457999999999999 68999999999999999999999998888 9999999999999999995458888531
Q ss_pred --------------cCCccCHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHhcc
Q 019748 129 --------------GGLIFDTQTIQRMECLILGALKWRMRSITPFTFLSFFISLFKLKDLTVQRALKTRASEVIFQAQID 194 (336)
Q Consensus 129 --------------~~~~~~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~~~~~~~~~~~~l~~~~~~l~~~~l~d 194 (336)
..|.+.+++|++||+.||++|+|++.++||+.||..|++.++.. ..+...+++++..++.+
T Consensus 110 ~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~-----~~l~~~A~~ll~~sl~~ 184 (358)
T 2pk2_A 110 TCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRAS-----KDLAQTSYFMATNSLHL 184 (358)
T ss_dssp HHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCC-----HHHHHHHHHHHHHHTTT
T ss_pred HHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCC-----HHHHHHHHHHHHHHHhc
Confidence 11223489999999999999999999999999999999988753 24667788888888754
Q ss_pred -hhhhCccHHHHHHHHHHHHHHHhCCC-----chhhhHHhchhcCCCCHhhHHHHHHHHHHhhc
Q 019748 195 -IKLIEFKPSIIAASALLFASRELFPL-----QFHCFRKAISNCPYVNKENLLRCYNAMQDTSM 252 (336)
Q Consensus 195 -~~~l~~~PS~iAaAal~~a~~~l~~~-----~~~~~~~~L~~~~~~~~~~l~~C~~~l~~l~~ 252 (336)
..++.|+||.||+|||++|...++.. ....|...+ ..++++++|.+|++.|.++..
T Consensus 185 t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~--~~~vt~~~l~~i~~~il~~y~ 246 (358)
T 2pk2_A 185 TTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYV--DATVTLELLDELTHEFLQILE 246 (358)
T ss_dssp SCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTS--CSSCCHHHHHHHHHHHHHHTT
T ss_pred CcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHH--hccCCHHHHHHHHHHHHHHHH
Confidence 44899999999999999999988621 112354433 247999999999999999775
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.97 E-value=6.8e-30 Score=242.73 Aligned_cols=191 Identities=18% Similarity=0.223 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHHhh--hcc--cChhHHHHHHHHHHHhhhccccCCCCcchhHHHHHHHHHHHHHhhccCcchhhhhhhcC
Q 019748 55 NSLRSRAVSSILQF--SCK--FDPFLSYLAVNYMDRYLSSQEMPQPKPWKLRLLAVSCFSLAAKMRQIEFSYTQFQADGG 130 (336)
Q Consensus 55 ~~~R~~~vdWi~~v--~~~--~~~~T~~lAv~~lDRfLs~~~v~~~~~~~lqLlavaCL~lAsK~eE~~~pl~dl~~~~~ 130 (336)
..+|...++||.++ .++ ++++|+++|++|||||++...+.+.+ +|++|+|||+||+|+||..+++.+|+....
T Consensus 54 ~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~---~~lva~acLfLA~K~EE~~~~l~d~v~~~~ 130 (323)
T 1jkw_A 54 MTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYH---PRIIMLTCAFLACKVDEFNVSSPQFVGNLR 130 (323)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSC---HHHHHHHHHHHHHHHTTCCCCHHHHGGGSS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcC---HHHHHHHHHHHHHhhhcCCCCHHHHHHHhc
Confidence 35889999999999 688 99999999999999999999998887 999999999999999999777999864321
Q ss_pred -----CccCHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHcc-----CCChHHHHHHHHHHHHHHHHHhcchhhhCc
Q 019748 131 -----LIFDTQTIQRMECLILGALKWRMRSITPFTFLSFFISLFK-----LKDLTVQRALKTRASEVIFQAQIDIKLIEF 200 (336)
Q Consensus 131 -----~~~~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~~~-----~~~~~~~~~l~~~~~~l~~~~l~d~~~l~~ 200 (336)
..|++++|++||+.||++|+|++.++||+.||..|+..+. ..+. ..+...++.++..++.+..++.|
T Consensus 131 ~~p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~---~~l~~~A~~~l~~sl~t~~~l~~ 207 (323)
T 1jkw_A 131 ESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENP---EILRKTADDFLNRIALTDAYLLY 207 (323)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCH---HHHHHHHHHHHHHHTTSTHHHHS
T ss_pred cChhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCH---HHHHHHHHHHHHHHHhccHHHcC
Confidence 1367899999999999999999999999999999987652 2232 35778889999999999999999
Q ss_pred cHHHHHHHHHHHHHHHhCCCchhhhHHhchhc--CCCCHhhHHHHHHHHHHhhc
Q 019748 201 KPSIIAASALLFASRELFPLQFHCFRKAISNC--PYVNKENLLRCYNAMQDTSM 252 (336)
Q Consensus 201 ~PS~iAaAal~~a~~~l~~~~~~~~~~~L~~~--~~~~~~~l~~C~~~l~~l~~ 252 (336)
+||.||+|||++|...++.. .+.|...+..+ .+++.++|.+|++.|..+..
T Consensus 208 ~Ps~IAaAai~lA~~~~~~~-~~~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~ 260 (323)
T 1jkw_A 208 TPSQIALTAILSSASRAGIT-MESYLSESLMLKENRTCLSQLLDIMKSMRNLVK 260 (323)
T ss_dssp CHHHHHHHHHHHHHHHHSCC-CTTHHHHHTTSCSSSCCTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCC-hHHHHHHHhccccccccHHHHHHHHHHHHHHHH
Confidence 99999999999999988752 35687777655 78899999999999999876
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.93 E-value=1.2e-24 Score=193.85 Aligned_cols=183 Identities=18% Similarity=0.163 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHhh--hcccChhHHHHHHHHHHHhhhccccCCCCcchhHHHHHHHHHHHHHhhccCcchhhhhhhcCCcc
Q 019748 56 SLRSRAVSSILQF--SCKFDPFLSYLAVNYMDRYLSSQEMPQPKPWKLRLLAVSCFSLAAKMRQIEFSYTQFQADGGLIF 133 (336)
Q Consensus 56 ~~R~~~vdWi~~v--~~~~~~~T~~lAv~~lDRfLs~~~v~~~~~~~lqLlavaCL~lAsK~eE~~~pl~dl~~~~~~~~ 133 (336)
+......+||.++ .+++++.|+.+|+.||+||+....+...+ .+++|+|||+||+|+||....+.|+.... .+
T Consensus 3 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~---~~~v~aaclylAcK~ee~p~~l~di~~~~--~~ 77 (207)
T 1c9b_A 3 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRA---NDAIASACLYIACRQEGVPRTFKEICAVS--RI 77 (207)
T ss_dssp GGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSC---HHHHHHHHHHHHHHHTTCCCCHHHHHHTS--SS
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCC---HHHHHHHHHHHHHHhcCCCCCHHHHHHHH--CC
Confidence 3467788999999 68999999999999999999999998888 99999999999999999855588987655 48
Q ss_pred CHHHHHHHHHHHHHHcCCcccCCChHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHhcchhhhCccHHHHHHHHHHHH
Q 019748 134 DTQTIQRMECLILGALKWRMRSITPFTFLSFFISLFKLKDLTVQRALKTRASEVIFQAQIDIKLIEFKPSIIAASALLFA 213 (336)
Q Consensus 134 ~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~~~~~~~~~~~~l~~~~~~l~~~~l~d~~~l~~~PS~iAaAal~~a 213 (336)
+.++|.++|+.||+.|+|++.+++|+.|+..|.+.++.++ .+...+.+++..+..+.-+++++|+.||+|||++|
T Consensus 78 ~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~-----~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA 152 (207)
T 1c9b_A 78 SKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPK-----QVQMAATHIARKAVELDLVPGRSPISVAAAAIYMA 152 (207)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCH-----HHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998753 34566777777777777788999999999999999
Q ss_pred HHHhCCCchhhhHHhchhcCCCCHhhHHHHHHHHHHhh
Q 019748 214 SRELFPLQFHCFRKAISNCPYVNKENLLRCYNAMQDTS 251 (336)
Q Consensus 214 ~~~l~~~~~~~~~~~L~~~~~~~~~~l~~C~~~l~~l~ 251 (336)
....+. +.|.+.+..++|+++..|.+|++.|.+..
T Consensus 153 ~~~~~~---~~~~~~i~~~~~v~~~tI~~~~~~l~~~l 187 (207)
T 1c9b_A 153 SQASAE---KRTQKEIGDIAGVADVTIRQSYRLIYPRA 187 (207)
T ss_dssp HHTSSS---CCCHHHHHHHHTCCHHHHHHHHHHHGGGH
T ss_pred HHHHCC---CCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 998863 34667788889999999999999998744
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.86 E-value=9.1e-21 Score=167.78 Aligned_cols=183 Identities=14% Similarity=0.148 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHhh--hcccChhHHHHHHHHHHHhhhccccCCCCcchhHHHHHHHHHHHHHhhccCcchhhhhhhcCCcc
Q 019748 56 SLRSRAVSSILQF--SCKFDPFLSYLAVNYMDRYLSSQEMPQPKPWKLRLLAVSCFSLAAKMRQIEFSYTQFQADGGLIF 133 (336)
Q Consensus 56 ~~R~~~vdWi~~v--~~~~~~~T~~lAv~~lDRfLs~~~v~~~~~~~lqLlavaCL~lAsK~eE~~~pl~dl~~~~~~~~ 133 (336)
+....+.++|.++ .+++++.+...|..|++||+....+...+ .+.+|++|+++|+|.|+....+.|+.... .+
T Consensus 7 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~---~~~vaaAclylAcr~~~~p~~l~di~~~~--~v 81 (200)
T 1ais_B 7 RNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRS---IESVMAACVYAACRLLKVPRTLDEIADIA--RV 81 (200)
T ss_dssp -CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCC---HHHHHHHHHHHHHHHHTCCCCHHHHHHHT--TS
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCC---HHHHHHHHHHHHHHHcCCCCCHHHHHHHH--CC
Confidence 3456889999999 68999999999999999999998887777 99999999999999999755588986655 48
Q ss_pred CHHHHHHHHHHHHHHcCCcccC--CChHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHhcchhhhCccHHHHHHHHHH
Q 019748 134 DTQTIQRMECLILGALKWRMRS--ITPFTFLSFFISLFKLKDLTVQRALKTRASEVIFQAQIDIKLIEFKPSIIAASALL 211 (336)
Q Consensus 134 ~~~~I~~mE~~IL~~L~w~l~~--~Tp~~Fl~~~l~~~~~~~~~~~~~l~~~~~~l~~~~l~d~~~l~~~PS~iAaAal~ 211 (336)
+..+|.++++.|++.|+|++.+ ++|..||..|...++.++ .+...+++++..+..+.-+.+++|+.||+|||+
T Consensus 82 ~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~-----~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly 156 (200)
T 1ais_B 82 DKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSE-----KVRRRAIEILDEAYKRGLTSGKSPAGLVAAALY 156 (200)
T ss_dssp CHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCH-----HHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHH
Confidence 8999999999999999999999 999999999999998753 456778888888888888899999999999999
Q ss_pred HHHHHhCCCchhhhHHhchhcCCCCHhhHHHHHHHHHHhh
Q 019748 212 FASRELFPLQFHCFRKAISNCPYVNKENLLRCYNAMQDTS 251 (336)
Q Consensus 212 ~a~~~l~~~~~~~~~~~L~~~~~~~~~~l~~C~~~l~~l~ 251 (336)
+|.+..+. +.|.+.+..+.|+++..|.+|++.|.+..
T Consensus 157 ~A~~~~~~---~~t~~ei~~~~~vs~~ti~~~~~~l~~~l 193 (200)
T 1ais_B 157 IASLLEGE---KRTQREVAEVARVTEVTVRNRYKELVEKL 193 (200)
T ss_dssp HHHHHTTC---CCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC---CCCHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 99998863 34678889999999999999999999855
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.63 E-value=8.5e-17 Score=153.86 Aligned_cols=180 Identities=10% Similarity=0.102 Sum_probs=76.1
Q ss_pred HHHHHHHHhh--hcccChhHHHHHHHHHHHhhhccccCCCCcchhHHHHHHHHHHHHHhhccCcchhhhhhhcCCccCHH
Q 019748 59 SRAVSSILQF--SCKFDPFLSYLAVNYMDRYLSSQEMPQPKPWKLRLLAVSCFSLAAKMRQIEFSYTQFQADGGLIFDTQ 136 (336)
Q Consensus 59 ~~~vdWi~~v--~~~~~~~T~~lAv~~lDRfLs~~~v~~~~~~~lqLlavaCL~lAsK~eE~~~pl~dl~~~~~~~~~~~ 136 (336)
..+...|..+ .++++..+.-.|..||.|++....+...+ .+.+++|||+||+|.|+....+.|+.... .++.+
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~---~~~vaaAclyiAcR~e~~prtl~ei~~~~--~v~~k 201 (345)
T 3k7a_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKS---MESIMAASILIGCRRAEVARTFKEIQSLI--HVKTK 201 (345)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCC---SHHHHTTTTTTTSBTTBSSCCHHHHHHSS--SCCSH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCc---HHHHHHHHHHHHHHHcCCCccHHHHHHHH--CCCHH
Confidence 4556667777 68999999999999999999998888777 99999999999999999855588886654 48899
Q ss_pred HHHHHHHHHHHHcC------------CcccCCChHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHhcchhhhCccHHH
Q 019748 137 TIQRMECLILGALK------------WRMRSITPFTFLSFFISLFKLKDLTVQRALKTRASEVIFQAQIDIKLIEFKPSI 204 (336)
Q Consensus 137 ~I~~mE~~IL~~L~------------w~l~~~Tp~~Fl~~~l~~~~~~~~~~~~~l~~~~~~l~~~~l~d~~~l~~~PS~ 204 (336)
+|.++++.|++.|+ +.+.+++|..||..|...++... .+...+++++..+..+.-+..++|+.
T Consensus 202 eIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~-----~v~~~A~~i~~~~~~~~l~~Gr~P~~ 276 (345)
T 3k7a_M 202 EFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM-----QVTTSAEYTAKKCKEIKEIAGKSPIT 276 (345)
T ss_dssp HHHHHHHHHHHHHTCC----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHHhchhcCCCHHH
Confidence 99999999999999 99999999999999999988752 45677888888888877788999999
Q ss_pred HHHHHHHHHHHHhCCCchhhhHHhchhcCCCCHhhHHHHHHHHHHhh
Q 019748 205 IAASALLFASRELFPLQFHCFRKAISNCPYVNKENLLRCYNAMQDTS 251 (336)
Q Consensus 205 iAaAal~~a~~~l~~~~~~~~~~~L~~~~~~~~~~l~~C~~~l~~l~ 251 (336)
||||||++|...++. ..+...+..+.|+++..|..+++.|.+..
T Consensus 277 IAaAaIylAa~~~~~---~~t~~eIa~~~~Vse~TIr~~ykel~~~~ 320 (345)
T 3k7a_M 277 IAVVSIYLNILLFQI---PITAAKVGQTLQVTEGTIKSGYKILYEHR 320 (345)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHHHHHHHHCC---CCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999999999988763 34677888899999999999999998754
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.19 E-value=3.3e-11 Score=115.01 Aligned_cols=180 Identities=10% Similarity=0.106 Sum_probs=72.1
Q ss_pred HHHHHHHHhh--hcccChhHHHHHHHHHHHhhhccccCCCCcchhHHHHHHHHHHHHHhhccCcchhhhhhhcCCccCHH
Q 019748 59 SRAVSSILQF--SCKFDPFLSYLAVNYMDRYLSSQEMPQPKPWKLRLLAVSCFSLAAKMRQIEFSYTQFQADGGLIFDTQ 136 (336)
Q Consensus 59 ~~~vdWi~~v--~~~~~~~T~~lAv~~lDRfLs~~~v~~~~~~~lqLlavaCL~lAsK~eE~~~pl~dl~~~~~~~~~~~ 136 (336)
..+...|.++ .++++..+.-.|..++.+++....+.... ...++++|+++|+|.++....+.|+.... ..+.+
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs---~e~vaAAclYiACR~~~~prtl~eI~~~~--~v~~k 201 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKS---MESIMAASILIGCRRAEVARTFKEIQSLI--HVKTK 201 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCC---HHHHHHHHHHHHHHHTCCBCCHHHHHHHH--TCCTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCC---HHHHHHHHHHHHHHhcCCCccHHHHHHHh--CCCHH
Confidence 3445555666 68999999999999999999988787777 99999999999999999766688875544 36789
Q ss_pred HHHHHHHHHHHHcCCc------------ccCCChHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHhcchhhhCccHHH
Q 019748 137 TIQRMECLILGALKWR------------MRSITPFTFLSFFISLFKLKDLTVQRALKTRASEVIFQAQIDIKLIEFKPSI 204 (336)
Q Consensus 137 ~I~~mE~~IL~~L~w~------------l~~~Tp~~Fl~~~l~~~~~~~~~~~~~l~~~~~~l~~~~l~d~~~l~~~PS~ 204 (336)
+|.+..+.|.+.|+.. +..+.|.+|+..|...++... .+...+.+++..+..+.-....+|+.
T Consensus 202 eigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~-----~v~~~A~~i~~~~~~~~i~~GR~P~~ 276 (345)
T 4bbr_M 202 EFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM-----QVTTSAEYTAKKCKEIKEIAGKSPIT 276 (345)
T ss_dssp HHHHHHHHHHHCC-------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcH-----HHHHHHHHHHHHHHhcccccCCChHH
Confidence 9999999999999974 778899999999999988753 45566777777666655557899999
Q ss_pred HHHHHHHHHHHHhCCCchhhhHHhchhcCCCCHhhHHHHHHHHHHhh
Q 019748 205 IAASALLFASRELFPLQFHCFRKAISNCPYVNKENLLRCYNAMQDTS 251 (336)
Q Consensus 205 iAaAal~~a~~~l~~~~~~~~~~~L~~~~~~~~~~l~~C~~~l~~l~ 251 (336)
||+||||+|....+.. .-...+....|+++.-|...++.|.+..
T Consensus 277 IAAAaIylAa~l~g~~---~t~~eIa~v~~Vse~TIr~rykel~~~~ 320 (345)
T 4bbr_M 277 IAVVSIYLNILLFQIP---ITAAKVGQTLQVTEGTIKSGYKILYEHR 320 (345)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHHHHHHHhCCC---CCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9999999999877632 2246688889999999999999888754
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=98.22 E-value=1.2e-05 Score=74.14 Aligned_cols=106 Identities=10% Similarity=0.115 Sum_probs=80.4
Q ss_pred HHHHHHhh--hcccChhHHHHHHHHHHHhhhccc-cCCCCcchhHHHHHHHHHHHHHhhccCcc-hhhhhhhcCCccCHH
Q 019748 61 AVSSILQF--SCKFDPFLSYLAVNYMDRYLSSQE-MPQPKPWKLRLLAVSCFSLAAKMRQIEFS-YTQFQADGGLIFDTQ 136 (336)
Q Consensus 61 ~vdWi~~v--~~~~~~~T~~lAv~~lDRfLs~~~-v~~~~~~~lqLlavaCL~lAsK~eE~~~p-l~dl~~~~~~~~~~~ 136 (336)
+-+|+..+ ..++++.++..|+.|+||+..... +.. .++...-+-++||.+|+|+-+.... -..+...+ .++.+
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l-~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVg--Gisl~ 153 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTL-NSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVG--GVRCH 153 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCC-STTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHH--TSCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCcc-CCchHHHHHHHHHHHHHHhccccccChhHhhhcc--CcCHH
Confidence 45577777 457899999999999999988644 322 2455888889999999999877654 44554444 48999
Q ss_pred HHHHHHHHHHHHcCCcccCCChHHHHHHHHHHcc
Q 019748 137 TIQRMECLILGALKWRMRSITPFTFLSFFISLFK 170 (336)
Q Consensus 137 ~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~~l~~~~ 170 (336)
++-+||+..|..|+|++.+. +..|..+++....
T Consensus 154 ELN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~~~ 186 (293)
T 2pmi_B 154 ELNILENDFLKRVNYRIIPR-DHNITLCSIEQKQ 186 (293)
T ss_dssp HHHHHHHHHHHTTTTCCSCC-TTHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHcCCceeeC-HHHHHHHHHHHhh
Confidence 99999999999999999665 5566666665543
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=95.79 E-value=0.05 Score=46.86 Aligned_cols=81 Identities=9% Similarity=0.021 Sum_probs=66.5
Q ss_pred hcccChhHHHHHHHHHHHhhhccccCCCCcchhHHHHHHHHHHHHHhhccCcchhhhhhhcCCccCHHHHHHHHHHHHHH
Q 019748 69 SCKFDPFLSYLAVNYMDRYLSSQEMPQPKPWKLRLLAVSCFSLAAKMRQIEFSYTQFQADGGLIFDTQTIQRMECLILGA 148 (336)
Q Consensus 69 ~~~~~~~T~~lAv~~lDRfLs~~~v~~~~~~~lqLlavaCL~lAsK~eE~~~pl~dl~~~~~~~~~~~~I~~mE~~IL~~ 148 (336)
.++++.++.-.|..++.+.....-+.... ...+|+||+++|+++.....+..++.... ..+..+|.+.=..+.+.
T Consensus 118 ~L~l~~~v~~~A~~i~~~~~~~~~~~gr~---P~~iAaAaly~A~~~~~~~~t~~ei~~~~--~vs~~ti~~~~~~l~~~ 192 (200)
T 1ais_B 118 ELGLSEKVRRRAIEILDEAYKRGLTSGKS---PAGLVAAALYIASLLEGEKRTQREVAEVA--RVTEVTVRNRYKELVEK 192 (200)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHTTCCTTSC---HHHHHHHHHHHHHHHTTCCCCHHHHHHHH--TCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHcCcccCCC---HHHHHHHHHHHHHHHhCCCCCHHHHHHHh--CCCHHHHHHHHHHHHHH
Confidence 45778889999999999998876666666 89999999999999988766677875554 47889999999999999
Q ss_pred cCCccc
Q 019748 149 LKWRMR 154 (336)
Q Consensus 149 L~w~l~ 154 (336)
|+-.+.
T Consensus 193 l~~~~~ 198 (200)
T 1ais_B 193 LKIKVP 198 (200)
T ss_dssp HTCCCC
T ss_pred cCCCCC
Confidence 986553
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=94.82 E-value=0.13 Score=44.47 Aligned_cols=86 Identities=17% Similarity=0.193 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHhcchhhhCccHHHHHHHHHHHHHHHhCCCchhhhHHhchhcCCCCH
Q 019748 158 PFTFLSFFISLFKLKDLTVQRALKTRASEVIFQAQIDIKLIEFKPSIIAASALLFASRELFPLQFHCFRKAISNCPYVNK 237 (336)
Q Consensus 158 p~~Fl~~~l~~~~~~~~~~~~~l~~~~~~l~~~~l~d~~~l~~~PS~iAaAal~~a~~~l~~~~~~~~~~~L~~~~~~~~ 237 (336)
.+.+|..+...++..+ .....+..+.........+.++++-.||+|||++|.+..+. |.-...+...++++.
T Consensus 8 a~~~I~~~~~~L~L~~-----~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~---p~~l~di~~~~~~~~ 79 (207)
T 1c9b_A 8 AFKEITTMADRINLPR-----NIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGV---PRTFKEICAVSRISK 79 (207)
T ss_dssp HHHHHHHHHHHTTCCH-----HHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTC---CCCHHHHHHTSSSCH
T ss_pred HHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCC---CCCHHHHHHHHCCCH
Confidence 4567888888887753 34455566666555556677899999999999999998763 223456777788999
Q ss_pred hhHHHHHHHHHHhh
Q 019748 238 ENLLRCYNAMQDTS 251 (336)
Q Consensus 238 ~~l~~C~~~l~~l~ 251 (336)
.++.++++.|.+..
T Consensus 80 ~~i~~~~~~ll~~L 93 (207)
T 1c9b_A 80 KEIGRCFKLILKAL 93 (207)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888754
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=92.14 E-value=0.45 Score=44.74 Aligned_cols=90 Identities=17% Similarity=0.103 Sum_probs=67.3
Q ss_pred CCChHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHhcchhhhCccHHHHHHHHHHHHHHHhCCCchhhhHHhchhcCC
Q 019748 155 SITPFTFLSFFISLFKLKDLTVQRALKTRASEVIFQAQIDIKLIEFKPSIIAASALLFASRELFPLQFHCFRKAISNCPY 234 (336)
Q Consensus 155 ~~Tp~~Fl~~~l~~~~~~~~~~~~~l~~~~~~l~~~~l~d~~~l~~~PS~iAaAal~~a~~~l~~~~~~~~~~~L~~~~~ 234 (336)
....+..|..+...++..+ .+...+..+...+.....+-..+...|||||||+|.+..+. |.-...+..+++
T Consensus 126 L~~a~~~I~~~~~~L~Lp~-----~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~---prtl~eI~~~~~ 197 (345)
T 4bbr_M 126 VQAAFAKITMLCDAAELPK-----IVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV---ARTFKEIQSLIH 197 (345)
T ss_dssp TTHHHHHHHHHHHHTTCCH-----HHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCC---BCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCC---CccHHHHHHHhC
Confidence 3567778888888888753 45567777776655444455678889999999999998763 333456777789
Q ss_pred CCHhhHHHHHHHHHHhhc
Q 019748 235 VNKENLLRCYNAMQDTSM 252 (336)
Q Consensus 235 ~~~~~l~~C~~~l~~l~~ 252 (336)
+++.+|..+++.|.+...
T Consensus 198 v~~keigr~~k~l~~~L~ 215 (345)
T 4bbr_M 198 VKTKEFGKTLNIMKNILR 215 (345)
T ss_dssp CCTTHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHHHHHHHHhC
Confidence 999999999999988543
No 23
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=87.19 E-value=0.26 Score=46.31 Aligned_cols=88 Identities=17% Similarity=0.116 Sum_probs=65.6
Q ss_pred ChHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHhcchhhhCccHHHHHHHHHHHHHHHhCCCchhhhHHhchhcCCCC
Q 019748 157 TPFTFLSFFISLFKLKDLTVQRALKTRASEVIFQAQIDIKLIEFKPSIIAASALLFASRELFPLQFHCFRKAISNCPYVN 236 (336)
Q Consensus 157 Tp~~Fl~~~l~~~~~~~~~~~~~l~~~~~~l~~~~l~d~~~l~~~PS~iAaAal~~a~~~l~~~~~~~~~~~L~~~~~~~ 236 (336)
..+.+|..+...++..+ .+...+..+...+.....+-..+.-.||+|||++|.+..+. |.-...+..+++++
T Consensus 128 ~a~~~I~~~~~~L~Lp~-----~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~---prtl~ei~~~~~v~ 199 (345)
T 3k7a_M 128 AAFAKITMLCDAAELPK-----IVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV---ARTFKEIQSLIHVK 199 (345)
T ss_dssp HHHHHHHHHHHHTTCCH-----HHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBS---SCCHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCC---CccHHHHHHHHCCC
Confidence 45677788888877652 45566777766655544556788899999999999987652 33356677888999
Q ss_pred HhhHHHHHHHHHHhhc
Q 019748 237 KENLLRCYNAMQDTSM 252 (336)
Q Consensus 237 ~~~l~~C~~~l~~l~~ 252 (336)
+.+|..|++.|.+...
T Consensus 200 ~keIgr~~~~l~~~L~ 215 (345)
T 3k7a_M 200 TKEFGKTLNIMKNILR 215 (345)
T ss_dssp SHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988543
No 24
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=84.33 E-value=3.2 Score=36.33 Aligned_cols=88 Identities=7% Similarity=0.073 Sum_probs=56.6
Q ss_pred HHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHhcchhhhC-ccHHHHHHHHHHHHHHHhCCC-chhhhHHhchh----c
Q 019748 159 FTFLSFFISLFKLKDLTVQRALKTRASEVIFQAQIDIKLIE-FKPSIIAASALLFASRELFPL-QFHCFRKAISN----C 232 (336)
Q Consensus 159 ~~Fl~~~l~~~~~~~~~~~~~l~~~~~~l~~~~l~d~~~l~-~~PS~iAaAal~~a~~~l~~~-~~~~~~~~L~~----~ 232 (336)
.++|......++... .....+..++...+....+.. +.+-.||+|||++|.+.-+.. ....+...... .
T Consensus 32 ~~~i~~v~~~l~L~~-----~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~~ 106 (235)
T 1zp2_A 32 WKVVQTFGDRLRLRQ-----RVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLK 106 (235)
T ss_dssp HHHHHHHHHHTTCCH-----HHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccch
Confidence 456666666666652 233445555555555566778 999999999999999986632 22222111111 1
Q ss_pred CCCCHhhHHHHHHHHHHhh
Q 019748 233 PYVNKENLLRCYNAMQDTS 251 (336)
Q Consensus 233 ~~~~~~~l~~C~~~l~~l~ 251 (336)
..++.++|..+...|.+..
T Consensus 107 ~~~~~~~I~~~E~~iL~~L 125 (235)
T 1zp2_A 107 VKLSRSNISEIEFEIISVL 125 (235)
T ss_dssp SCCCHHHHHHHHHHHHHHT
T ss_pred hhccHHHHHHHHHHHHHHC
Confidence 2578999999999988754
No 25
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=71.84 E-value=27 Score=30.61 Aligned_cols=76 Identities=17% Similarity=0.113 Sum_probs=46.9
Q ss_pred ccChhHHHHHHHHHHHhhh-ccccCCCCcchhHHHHHHHHHHHHHhhccCcch-hh---hhhhcCCccCHHHHHHHHHHH
Q 019748 71 KFDPFLSYLAVNYMDRYLS-SQEMPQPKPWKLRLLAVSCFSLAAKMRQIEFSY-TQ---FQADGGLIFDTQTIQRMECLI 145 (336)
Q Consensus 71 ~~~~~T~~lAv~~lDRfLs-~~~v~~~~~~~lqLlavaCL~lAsK~eE~~~pl-~d---l~~~~~~~~~~~~I~~mE~~I 145 (336)
+.+.+...+|..++..-+. ..-.-... ...+|+||+++|+++-....|. .+ .-..-...++.++|...-..|
T Consensus 158 ~~~~~~~~~A~~~~~~sl~~~~~~l~~~---Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l~~~~~~i 234 (257)
T 2ivx_A 158 RASKDLAQTSYFMATNSLHLTTFCLQYK---PTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEF 234 (257)
T ss_dssp TCCHHHHHHHHHHHHHHHHHCCGGGTSC---HHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhhhhcccHHHcCC---HHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHHHHHHHHH
Confidence 4456666777777644432 22233344 7899999999999997755442 11 111001147889998888888
Q ss_pred HHHc
Q 019748 146 LGAL 149 (336)
Q Consensus 146 L~~L 149 (336)
+..+
T Consensus 235 ~~~~ 238 (257)
T 2ivx_A 235 LQIL 238 (257)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 26
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=69.70 E-value=26 Score=30.57 Aligned_cols=73 Identities=16% Similarity=0.132 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHhhhccccCCCCcchhHHHHHHHHHHHHHhhccCcch-h-hhhhh---cC--CccCHHHHHHHHHHHHH
Q 019748 75 FLSYLAVNYMDRYLSSQEMPQPKPWKLRLLAVSCFSLAAKMRQIEFSY-T-QFQAD---GG--LIFDTQTIQRMECLILG 147 (336)
Q Consensus 75 ~T~~lAv~~lDRfLs~~~v~~~~~~~lqLlavaCL~lAsK~eE~~~pl-~-dl~~~---~~--~~~~~~~I~~mE~~IL~ 147 (336)
+...+|..+++.-+.....-... ...+|+||+++|+++-....|- . ..... .. -.++.++|...-..|+.
T Consensus 171 ~~~~~A~~l~~~s~~~~~~l~~~---Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~ 247 (258)
T 2i53_A 171 KLVQMAWTFVNDSLCTTLSLQWE---PEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILD 247 (258)
T ss_dssp HHHHHHHHHHHHHTTTTGGGTSC---HHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCchhccC---hHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHHHHHHHHHH
Confidence 56777777777766555555555 7899999999999987665431 1 01000 00 14789999999888887
Q ss_pred HcC
Q 019748 148 ALK 150 (336)
Q Consensus 148 ~L~ 150 (336)
...
T Consensus 248 ly~ 250 (258)
T 2i53_A 248 LYS 250 (258)
T ss_dssp TTS
T ss_pred HHh
Confidence 654
No 27
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=68.28 E-value=21 Score=31.67 Aligned_cols=85 Identities=9% Similarity=-0.026 Sum_probs=52.1
Q ss_pred HHHHHHHHHccCCChHHHHHHHHHHHHHHHHHhcchhhhCccHHHHHHHHHHHHHHHhCCCchhhhHHhchhcC--CCCH
Q 019748 160 TFLSFFISLFKLKDLTVQRALKTRASEVIFQAQIDIKLIEFKPSIIAASALLFASRELFPLQFHCFRKAISNCP--YVNK 237 (336)
Q Consensus 160 ~Fl~~~l~~~~~~~~~~~~~l~~~~~~l~~~~l~d~~~l~~~PS~iAaAal~~a~~~l~~~~~~~~~~~L~~~~--~~~~ 237 (336)
+|+......++... .....+..+++..+....+-...+-.+|+||+++|.+..+.. .+. .+.+..++ .+++
T Consensus 43 ~wl~~v~~~~~l~~-----~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~-~p~-~~d~~~~~~~~~~~ 115 (269)
T 2b9r_A 43 DWLVQVQMKFRLLQ-----ETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMY-PPE-IGDFAFVTDNTYTK 115 (269)
T ss_dssp HHHHHHHHHTTCCH-----HHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSS-CCC-HHHHHHHTCSSSCH
T ss_pred HHHHHHHHHhCCCH-----HHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhccccc-Ccc-HHHHHHHhcCCCCH
Confidence 34444555555432 222344555555555555666788899999999999976531 111 22333444 4889
Q ss_pred hhHHHHHHHHHHhh
Q 019748 238 ENLLRCYNAMQDTS 251 (336)
Q Consensus 238 ~~l~~C~~~l~~l~ 251 (336)
++|.++...|.+..
T Consensus 116 ~eI~~mE~~IL~~L 129 (269)
T 2b9r_A 116 HQIRQMEMKILRAL 129 (269)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 99999988887743
No 28
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=66.33 E-value=31 Score=30.56 Aligned_cols=64 Identities=9% Similarity=0.037 Sum_probs=41.7
Q ss_pred HHHHHHhcchhhhCccHHHHHHHHHHHHHHHhCCCchhhhHHhchhcC--CCCHhhHHHHHHHHHHhh
Q 019748 186 EVIFQAQIDIKLIEFKPSIIAASALLFASRELFPLQFHCFRKAISNCP--YVNKENLLRCYNAMQDTS 251 (336)
Q Consensus 186 ~l~~~~l~d~~~l~~~PS~iAaAal~~a~~~l~~~~~~~~~~~L~~~~--~~~~~~l~~C~~~l~~l~ 251 (336)
.+++..+....+....+-.+|+||+++|.+..+.. +.-.+.+..++ .+++++|.++...|.+..
T Consensus 83 ~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~--p~~~~~~~~~~~~~~~~~eI~~mE~~IL~~L 148 (271)
T 2w96_A 83 NYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETI--PLTAEKLCIYTDNSIRPEELLQMELLLVNKL 148 (271)
T ss_dssp HHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSS--CCCHHHHHHHTTTSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcC--CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHC
Confidence 33333333444556778899999999999986631 11122333333 489999999998888754
No 29
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=66.00 E-value=33 Score=31.42 Aligned_cols=81 Identities=17% Similarity=0.142 Sum_probs=50.4
Q ss_pred HHHHHHHHcc--CCChHHHHHHHHHHHHHHHHHhcchhhhCccHHHHHHHHHHHHHHHhCCCchhhhHHhchhcCCCC--
Q 019748 161 FLSFFISLFK--LKDLTVQRALKTRASEVIFQAQIDIKLIEFKPSIIAASALLFASRELFPLQFHCFRKAISNCPYVN-- 236 (336)
Q Consensus 161 Fl~~~l~~~~--~~~~~~~~~l~~~~~~l~~~~l~d~~~l~~~PS~iAaAal~~a~~~l~~~~~~~~~~~L~~~~~~~-- 236 (336)
+|..+...++ .. ......+..++...+....+..+.|-.||+|||++|.+.-+... . .+.+......+
T Consensus 63 ~I~ev~~~l~~~Lp-----~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~--~-l~d~v~~~~~~p~ 134 (323)
T 1jkw_A 63 RLLEFCSVFKPAMP-----RSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNV--S-SPQFVGNLRESPL 134 (323)
T ss_dssp HHHHHHHHCTTTCC-----HHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCC--C-HHHHGGGSSSCHH
T ss_pred HHHHHHHHHcCCCC-----HHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCC--C-HHHHHHHhccChh
Confidence 4444555555 32 23445566666666677778899999999999999999865321 1 12232223222
Q ss_pred -----HhhHHHHHHHHHH
Q 019748 237 -----KENLLRCYNAMQD 249 (336)
Q Consensus 237 -----~~~l~~C~~~l~~ 249 (336)
.++|..+-..|.+
T Consensus 135 ~~~~~~~~Il~~E~~iL~ 152 (323)
T 1jkw_A 135 GQEKALEQILEYELLLIQ 152 (323)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 5677777776665
No 30
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=64.50 E-value=23 Score=31.80 Aligned_cols=87 Identities=13% Similarity=0.087 Sum_probs=52.8
Q ss_pred HHHHHHHHHccCCChHHHHHHHHHHHHHHHHHhcchhhhCccHHHHHHHHHHHHHHHhCCCc--hhhhHHhchh------
Q 019748 160 TFLSFFISLFKLKDLTVQRALKTRASEVIFQAQIDIKLIEFKPSIIAASALLFASRELFPLQ--FHCFRKAISN------ 231 (336)
Q Consensus 160 ~Fl~~~l~~~~~~~~~~~~~l~~~~~~l~~~~l~d~~~l~~~PS~iAaAal~~a~~~l~~~~--~~~~~~~L~~------ 231 (336)
+||......++... .....+..++...+....+..+.+-.||+|||++|.+.-+... ...+......
T Consensus 48 ~~I~~v~~~l~L~~-----~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~ 122 (285)
T 3rgf_B 48 NVIQALGEHLKLRQ-----QVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRF 122 (285)
T ss_dssp HHHHHHHHHTTCCH-----HHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCH-----HHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcccc
Confidence 44555555555542 2334455555555566777889999999999999999765321 1122111100
Q ss_pred --c----CCCCHhhHHHHHHHHHHhh
Q 019748 232 --C----PYVNKENLLRCYNAMQDTS 251 (336)
Q Consensus 232 --~----~~~~~~~l~~C~~~l~~l~ 251 (336)
. ..+..++|..+-..|.+..
T Consensus 123 ~~~~~~~~~~~~~~Il~~E~~iL~~L 148 (285)
T 3rgf_B 123 SYAFPKEFPYRMNHILECEFYLLELM 148 (285)
T ss_dssp TTTCCSCCCCCHHHHHHHHHHHHHHT
T ss_pred cccCchhhHHHHHHHHHHHHHHHHHc
Confidence 0 1257788988888887643
No 31
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=63.23 E-value=41 Score=29.43 Aligned_cols=67 Identities=7% Similarity=-0.037 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcchhhhCccHHHHHHHHHHHHHHHhCCCchhhhHHhchhcC--CCCHhhHHHHHHHHHHhh
Q 019748 183 RASEVIFQAQIDIKLIEFKPSIIAASALLFASRELFPLQFHCFRKAISNCP--YVNKENLLRCYNAMQDTS 251 (336)
Q Consensus 183 ~~~~l~~~~l~d~~~l~~~PS~iAaAal~~a~~~l~~~~~~~~~~~L~~~~--~~~~~~l~~C~~~l~~l~ 251 (336)
.+..+++..+....+.....-.+|+||+++|.+..+.. .+. .+.+..++ .+++++|.++-..|.+..
T Consensus 75 lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~-~p~-~~d~~~~~~~~~~~~~i~~mE~~IL~~L 143 (254)
T 2f2c_A 75 LSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVK-PMT-VSKLTYLSCDCFTNLELINQEKDILEAL 143 (254)
T ss_dssp HHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSS-CCC-HHHHSTTC---CCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccC-CCC-HHHHHHHhCCCCCHHHHHHHHHHHHHHC
Confidence 34445555555555666778899999999999986521 111 23344443 489999999998888754
No 32
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=60.57 E-value=37 Score=29.85 Aligned_cols=69 Identities=10% Similarity=-0.042 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHhhhccc-cCCCCcchhHHHHHHHHHHHHHhhccCcchhhhhhhcCCccCHHHHHHHHHHHHHH
Q 019748 75 FLSYLAVNYMDRYLSSQE-MPQPKPWKLRLLAVSCFSLAAKMRQIEFSYTQFQADGGLIFDTQTIQRMECLILGA 148 (336)
Q Consensus 75 ~T~~lAv~~lDRfLs~~~-v~~~~~~~lqLlavaCL~lAsK~eE~~~pl~dl~~~~~~~~~~~~I~~mE~~IL~~ 148 (336)
.+..+|-.+++.-+.... +.... ...+|+||+++|.+.-+...--..+.... .++.++|...=..|...
T Consensus 156 ~~~~~a~~l~e~sl~~~~~~~~~~---Ps~iAaAai~lA~~~~~~~~w~~~l~~~~--g~~~~~i~~~~~~l~~~ 225 (260)
T 2cch_B 156 KVESLAMFLGELSLIDADPYLKYL---PSVIAGAAFHLALYTVTGQSWPESLIRKT--GYTLESLKPCLMDLHQT 225 (260)
T ss_dssp HHHHHHHHHHHHHHHCHHHHTTSC---HHHHHHHHHHHHHHHHHSCCSCHHHHHHH--CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHhCCC---HHHHHHHHHHHHHHHhCCCcchHHHHHHh--CcCHHHHHHHHHHHHHH
Confidence 556666666665443333 44445 77899999999999766522133443333 47888887766665553
No 33
>3o0g_D Cyclin-dependent kinase 5 activator 1; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: a.74.1.1 PDB: 1h4l_D
Probab=60.16 E-value=37 Score=27.18 Aligned_cols=68 Identities=18% Similarity=0.279 Sum_probs=40.6
Q ss_pred HHHHHHHHhh--h--------ccc-ChhHHHHHHHHHHHhhhccccCCCCcchhHHHHHHHHHHHHHhh--ccCcchhhh
Q 019748 59 SRAVSSILQF--S--------CKF-DPFLSYLAVNYMDRYLSSQEMPQPKPWKLRLLAVSCFSLAAKMR--QIEFSYTQF 125 (336)
Q Consensus 59 ~~~vdWi~~v--~--------~~~-~~~T~~lAv~~lDRfLs~~~v~~~~~~~lqLlavaCL~lAsK~e--E~~~pl~dl 125 (336)
.++|-|+..| + .+| .|.-+.. |.++=|=+-...+. ..-.+|-+-.|||+||=-|- |+..|++-|
T Consensus 28 ~~~V~WlR~VDRsLLlQGWQD~~Fi~PanvVF-vYmL~r~~v~~~~~--se~eLqa~~lTCLYlsYSYmGNEISYPLKPF 104 (149)
T 3o0g_D 28 TDPVLWLRSVDRSLLLQGWQDQGFITPANVVF-LYMLCRDVISSEVG--SDHELQAVLLTCLYLSYSYMGNEISYPLKPF 104 (149)
T ss_dssp HHHHHHHHHHHHHHHHHTSCSSCSCCHHHHHH-HHHHHHHHSCTTCC--SHHHHHHHHHHHHHHHHHHHCSSSCCCSGGG
T ss_pred chhhhhHHhhhHHHHHccchhcccccchHHHH-HHHHHHHHcccccC--CHHHHHHHHHHHHHHHHHHhcccccccCcch
Confidence 5789999888 1 344 3332221 23333322222222 22249999999999998885 555688888
Q ss_pred hhhc
Q 019748 126 QADG 129 (336)
Q Consensus 126 ~~~~ 129 (336)
.++.
T Consensus 105 lv~~ 108 (149)
T 3o0g_D 105 LVES 108 (149)
T ss_dssp CCCS
T ss_pred hhcc
Confidence 6654
No 34
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=56.95 E-value=32 Score=30.15 Aligned_cols=67 Identities=9% Similarity=0.007 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcchhhhCccHHHHHHHHHHHHHHHhCCCchhhhHHhchhcC--CCCHhhHHHHHHHHHHhh
Q 019748 183 RASEVIFQAQIDIKLIEFKPSIIAASALLFASRELFPLQFHCFRKAISNCP--YVNKENLLRCYNAMQDTS 251 (336)
Q Consensus 183 ~~~~l~~~~l~d~~~l~~~PS~iAaAal~~a~~~l~~~~~~~~~~~L~~~~--~~~~~~l~~C~~~l~~l~ 251 (336)
.+..+++..+....+.....-.+|+||+++|.+..+.. .+. .+.+..++ .+++++|.++-..|.+..
T Consensus 74 lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~-~p~-~~d~~~~~~~~~~~~~i~~mE~~iL~~L 142 (257)
T 1g3n_C 74 LALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLT-PIS-TSSLCYAAADSFSRQELIDQEKELLEKL 142 (257)
T ss_dssp HHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSS-CCC-HHHHHHHTTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcccc-CCC-HHHHHHHHCCCCCHHHHHHHHHHHHHHC
Confidence 33444444444344445556789999999999975421 111 22333333 489999999998888754
No 35
>1unl_D Cyclin-dependent kinase 5 activator 1; inhibitor, ATP-analogue, neurodegen diseases; HET: RRC; 2.2A {Homo sapiens} SCOP: a.74.1.1 PDB: 1unh_D* 1ung_D*
Probab=54.81 E-value=45 Score=27.97 Aligned_cols=68 Identities=15% Similarity=0.284 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHHhh--ccCcchhhhhhhcCCccCHHHHHHHHHHHHHHcCCccc--CCChHHHHHHHHHHccC
Q 019748 100 KLRLLAVSCFSLAAKMR--QIEFSYTQFQADGGLIFDTQTIQRMECLILGALKWRMR--SITPFTFLSFFISLFKL 171 (336)
Q Consensus 100 ~lqLlavaCL~lAsK~e--E~~~pl~dl~~~~~~~~~~~~I~~mE~~IL~~L~w~l~--~~Tp~~Fl~~~l~~~~~ 171 (336)
.+|-+-+|||+||--|- |+..|+.-|.++.. ++.+-+-=+.|++.+.=+|- -..|.-|-+.|...-+.
T Consensus 122 eLqa~vLTCLYlsYSYmGNEISYPLKPFlve~~----ke~FWdRCl~ii~~~S~kML~iN~~p~~Ftevf~eLK~~ 193 (208)
T 1unl_D 122 ELQAVLLTCLYLSYSYMGNEISYPLKPFLVESC----KEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLKNE 193 (208)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSCCCSGGGCCSSC----HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhCccccccCcceeecCC----HHHHHHHHHHHHHhhchhhheecCCccHHHHHHHHHHhc
Confidence 39999999999998885 55568888866542 33332222223332222221 23466666666555443
No 36
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=53.18 E-value=42 Score=30.40 Aligned_cols=55 Identities=11% Similarity=-0.009 Sum_probs=35.0
Q ss_pred hhhhCccHHHHHHHHHHHHHHHhCCCchhhhHHhchhcC--CCCHhhHHHHHHHHHHhh
Q 019748 195 IKLIEFKPSIIAASALLFASRELFPLQFHCFRKAISNCP--YVNKENLLRCYNAMQDTS 251 (336)
Q Consensus 195 ~~~l~~~PS~iAaAal~~a~~~l~~~~~~~~~~~L~~~~--~~~~~~l~~C~~~l~~l~ 251 (336)
..+....+-.+|+||+++|.+..... .+. .+.+..++ .+++++|.++-..|.+..
T Consensus 106 ~~v~~~~lqLv~~tcL~lAsK~eE~~-p~~-~~~l~~~~~~~~~~~~i~~mE~~IL~~L 162 (306)
T 3g33_B 106 VPTRKAQLQLLGAVCMLLASKLRETT-PLT-IEKLCIYTDHAVSPRQLRDWEVLVLGKL 162 (306)
T ss_dssp CCCCGGGHHHHHHHHHHHHHHHHCSS-CCC-TTHHHHHTTTSSCHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHHHHHhccCC-CCC-HHHHHHHhccCccHHHHHHHHHHHHHHc
Confidence 34556777889999999999875421 111 12233333 478888888887777643
No 37
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=48.53 E-value=1.3e+02 Score=25.91 Aligned_cols=145 Identities=12% Similarity=0.115 Sum_probs=83.2
Q ss_pred HHHHhhh--cccChhHHHHHHHHHHHhhhccc---cCCCCcchhHHHHHHHHHHHHHhhccCcchhhhhhhcCCccCHHH
Q 019748 63 SSILQFS--CKFDPFLSYLAVNYMDRYLSSQE---MPQPKPWKLRLLAVSCFSLAAKMRQIEFSYTQFQADGGLIFDTQT 137 (336)
Q Consensus 63 dWi~~v~--~~~~~~T~~lAv~~lDRfLs~~~---v~~~~~~~lqLlavaCL~lAsK~eE~~~pl~dl~~~~~~~~~~~~ 137 (336)
+-|..++ -+++..++--||.+--.|.-... ..-.+ -|=+|.+|+.||+---...+|+.++..... ....-+
T Consensus 17 nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~---q~dVAAAc~miAae~~~~PiplaE~r~lD~-sL~Dve 92 (260)
T 3h4c_A 17 NCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVER---QPDVAAACLMIAAEEAQQPLPLAEVRCLDS-SLGDVE 92 (260)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCC---HHHHHHHHHHHHHHHTTCCCCHHHHHHHCT-TCCCHH
T ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccc---cHHHHHHHHHHHHHHcCCCccHHHHHHHhh-hhhHHH
Confidence 3345564 37788899999999888876554 22344 889999999999965555556777744332 233333
Q ss_pred HHHHHHHHHHHcCCc-----ccCCChHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHhcchhhhCccHHHHHHHHHHH
Q 019748 138 IQRMECLILGALKWR-----MRSITPFTFLSFFISLFKLKDLTVQRALKTRASEVIFQAQIDIKLIEFKPSIIAASALLF 212 (336)
Q Consensus 138 I~~mE~~IL~~L~w~-----l~~~Tp~~Fl~~~l~~~~~~~~~~~~~l~~~~~~l~~~~l~d~~~l~~~PS~iAaAal~~ 212 (336)
.++. .|+..|+-. |...-.-..|.+|+.+++..-. ...-.|..++...-....+..+---.--.-|+++
T Consensus 93 lrr~--Eiv~~l~l~e~e~rl~~~~~~NLl~~Yv~kL~Lq~s----~Y~p~C~rL~~ai~~ve~LA~~~~~drii~AlLL 166 (260)
T 3h4c_A 93 LRRA--DIVRELHLEDSERRLRDTFADNLLVKYILKLGLQVS----LYLPHCKRLLTALGRVEALAGLTVADRVTTALLL 166 (260)
T ss_dssp HHHH--HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCCHH----HHHHHHHHHHHHHHTCGGGTTCCHHHHHHHHHHH
T ss_pred HHHH--HHHHHccCCHHHHHHHHHhhhhHHHHHHHHhccchh----hhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4444 355555532 2222222355667777766421 1112344444332233445566655555667788
Q ss_pred HHHHh
Q 019748 213 ASREL 217 (336)
Q Consensus 213 a~~~l 217 (336)
|+.+-
T Consensus 167 ArT~~ 171 (260)
T 3h4c_A 167 ARTAQ 171 (260)
T ss_dssp HHHSC
T ss_pred Hhccc
Confidence 88653
No 38
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=48.21 E-value=66 Score=28.64 Aligned_cols=53 Identities=9% Similarity=0.021 Sum_probs=37.2
Q ss_pred hhCccHHHHHHHHHHHHHHHhCCCchhhhHHhchhcC--CCCHhhHHHHHHHHHHhh
Q 019748 197 LIEFKPSIIAASALLFASRELFPLQFHCFRKAISNCP--YVNKENLLRCYNAMQDTS 251 (336)
Q Consensus 197 ~l~~~PS~iAaAal~~a~~~l~~~~~~~~~~~L~~~~--~~~~~~l~~C~~~l~~l~ 251 (336)
......-.+|+||+++|.+..+.. .+. .+.+..++ .+++++|.++...|.+..
T Consensus 88 v~~~~lqlv~~acL~iA~K~eE~~-~p~-l~~~~~i~~~~~~~~ei~~mE~~IL~~L 142 (283)
T 1w98_B 88 VVKTLLQLIGISSLFIAAKLEEIY-PPK-LHQFAYVTDGACSGDEILTMELMIMKAL 142 (283)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHCSS-CCC-HHHHHHTTTTSSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhcccC-CCc-HHHHHHHHcCCCCHHHHHHHHHHHHHHc
Confidence 345667789999999999986531 111 23344444 589999999999888754
No 39
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=42.46 E-value=39 Score=31.45 Aligned_cols=56 Identities=13% Similarity=0.071 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHhcchhhhCccHHHHHHHHHHHHHHHhC
Q 019748 158 PFTFLSFFISLFKLKDLTVQRALKTRASEVIFQAQIDIKLIEFKPSIIAASALLFASRELF 218 (336)
Q Consensus 158 p~~Fl~~~l~~~~~~~~~~~~~l~~~~~~l~~~~l~d~~~l~~~PS~iAaAal~~a~~~l~ 218 (336)
..+||......++... .....+..+++..+....+..+.+-.||+|||++|.+..+
T Consensus 41 ~v~wI~ev~~~l~L~~-----~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE 96 (358)
T 2pk2_A 41 AANLLQDMGQRLNVSQ-----LTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEE 96 (358)
T ss_dssp HHHHHHHHHTTTTCCH-----HHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhcc
Confidence 4455666655555542 3345666677766677778889999999999999998764
No 40
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=30.05 E-value=2.7e+02 Score=25.08 Aligned_cols=87 Identities=14% Similarity=0.056 Sum_probs=43.8
Q ss_pred CChHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHhcchhhhCccHHHHHHHHHHHHHHHhCCCchhhhHHhchhcCCC
Q 019748 156 ITPFTFLSFFISLFKLKDLTVQRALKTRASEVIFQAQIDIKLIEFKPSIIAASALLFASRELFPLQFHCFRKAISNCPYV 235 (336)
Q Consensus 156 ~Tp~~Fl~~~l~~~~~~~~~~~~~l~~~~~~l~~~~l~d~~~l~~~PS~iAaAal~~a~~~l~~~~~~~~~~~L~~~~~~ 235 (336)
++...|+..+++.......-+.-.+ -|...+... ..+...-....--+-++||.+|.+.++.. ..+......+.|+
T Consensus 75 ISI~~Yl~RI~k~t~ls~~~ll~AL-vYLdRL~~~-~p~~~l~~~nvHRLlLtALmlAsK~ldD~--~ysN~~wAkVgGi 150 (293)
T 2pmi_B 75 ISIFNYFIRLTKFSSLEHCVLMTSL-YYIDLLQTV-YPDFTLNSLTAHRFLLTATTVATKGLCDS--FSTNAHYAKVGGV 150 (293)
T ss_dssp SCHHHHHHHHHHTTTCCHHHHHHHH-HHHHHHHHH-CTTCCCSTTTHHHHHHHHHHHHHHHHCSS--CCCHHHHHHHHTS
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHhh-CCCCccCCchHHHHHHHHHHHHHHhcccc--ccChhHhhhccCc
Confidence 4567788888877666422111111 122223221 11222334567778888999999988632 1122333334555
Q ss_pred CHhhHHHHHHH
Q 019748 236 NKENLLRCYNA 246 (336)
Q Consensus 236 ~~~~l~~C~~~ 246 (336)
+.+++...-..
T Consensus 151 sl~ELN~LE~e 161 (293)
T 2pmi_B 151 RCHELNILEND 161 (293)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 55554444333
No 41
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=29.75 E-value=1.7e+02 Score=22.98 Aligned_cols=72 Identities=17% Similarity=0.261 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhccCCCcchhhhccCCCCCHHHHHHHHHHHHhhh--------------------------cccChhHHH-
Q 019748 26 TILESLFLVESDHMPSKSYIKTLKGRDLDNSLRSRAVSSILQFS--------------------------CKFDPFLSY- 78 (336)
Q Consensus 26 ei~~~l~~~E~~~~p~~~yl~~~~~~~i~~~~R~~~vdWi~~v~--------------------------~~~~~~T~~- 78 (336)
..+++|++... . + .+.-++++...=..+|+|+..-. ++.++++++
T Consensus 25 ~~ik~ml~~~~----~-~---~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~vd~~~l~e 96 (141)
T 1fs1_B 25 VTIKTMLEDLG----M-D---PVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFE 96 (141)
T ss_dssp HHHHHHHHHTC----C-S---SEECTTCCHHHHHHHHHHHHHHTTCC-----------------HHHHHHTCSCHHHHHH
T ss_pred HHHHHHHHhcC----C-C---ceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHHhCCHHHHHH
Confidence 34577776532 0 1 12334688888889999987542 233444433
Q ss_pred --HHHHHHHHhhhccccCCCCcchhHHHHHHHHHHHHHhhccC
Q 019748 79 --LAVNYMDRYLSSQEMPQPKPWKLRLLAVSCFSLAAKMRQIE 119 (336)
Q Consensus 79 --lAv~~lDRfLs~~~v~~~~~~~lqLlavaCL~lAsK~eE~~ 119 (336)
+|-|||| - -.|+-++|-.+|..+....
T Consensus 97 Li~AAnyL~-----------I---~~Lldl~c~~vA~~ikgkt 125 (141)
T 1fs1_B 97 LILAANYLD-----------I---KGLLDVTCKTVANMIKGKT 125 (141)
T ss_dssp HHHHHHHHT-----------C---HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHh-----------h---hHHHHHHHHHHHHHHcCCC
Confidence 5666665 1 5688888999998887644
No 42
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=26.73 E-value=2.4e+02 Score=22.45 Aligned_cols=73 Identities=18% Similarity=0.178 Sum_probs=47.2
Q ss_pred CCCCHHHHHHHHHHHHhhh--------------------------cccChhHH---HHHHHHHHHhhhccccCCCCcchh
Q 019748 51 RDLDNSLRSRAVSSILQFS--------------------------CKFDPFLS---YLAVNYMDRYLSSQEMPQPKPWKL 101 (336)
Q Consensus 51 ~~i~~~~R~~~vdWi~~v~--------------------------~~~~~~T~---~lAv~~lDRfLs~~~v~~~~~~~l 101 (336)
++++...=..+|+|+..-. .+.+.+++ .+|-+||| - -
T Consensus 47 ~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~id~~~l~eLl~AAnyL~-----------I---~ 112 (159)
T 2ast_A 47 PNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLD-----------I---K 112 (159)
T ss_dssp TTSCHHHHHHHHHHHHHTTTCCC-----------CCCCCHHHHHHTCSCHHHHHHHHHHHHHHT-----------C---H
T ss_pred CCccHHHHHHHHHHHHHcCcCCCCcccccccccchhhhhHHHHHHHcCCHHHHHHHHHHHHHHh-----------H---H
Confidence 4688888889999997552 23444443 35666666 1 5
Q ss_pred HHHHHHHHHHHHHhhccCcc-hhhhhhhcCCccCHHHH
Q 019748 102 RLLAVSCFSLAAKMRQIEFS-YTQFQADGGLIFDTQTI 138 (336)
Q Consensus 102 qLlavaCL~lAsK~eE~~~p-l~dl~~~~~~~~~~~~I 138 (336)
.|+-++|-++|..+....+- ++.+.... .-|++++-
T Consensus 113 ~Lld~~c~~va~~i~gkt~eeir~~f~I~-~d~t~eEe 149 (159)
T 2ast_A 113 GLLDVTCKTVANMIKGKTPEEIRKTFNIK-NDFTEEEE 149 (159)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHTTCC-CCSCTTHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHcCCC-CCCCHHHH
Confidence 68889999999999876543 66553322 23665543
No 43
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=21.56 E-value=69 Score=18.15 Aligned_cols=18 Identities=33% Similarity=0.383 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHcCCc
Q 019748 135 TQTIQRMECLILGALKWR 152 (336)
Q Consensus 135 ~~~I~~mE~~IL~~L~w~ 152 (336)
.++|.++|..|-++|.|+
T Consensus 12 dqeikelennirkalsfd 29 (31)
T 2wh0_Q 12 DQEIKELENNIRKALSFD 29 (31)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 578999999999999886
Done!