Query 019749
Match_columns 336
No_of_seqs 228 out of 1193
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 04:14:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019749.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019749hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2881 Predicted membrane pro 100.0 1.2E-48 2.7E-53 367.6 12.9 194 132-335 63-278 (294)
2 COG2119 Predicted membrane pro 100.0 9.8E-46 2.1E-50 333.4 16.1 171 135-335 1-172 (190)
3 COG2119 Predicted membrane pro 99.9 4.5E-22 9.8E-27 180.2 11.3 122 91-230 63-185 (190)
4 PF01169 UPF0016: Uncharacteri 99.8 1.2E-21 2.7E-26 155.2 4.9 76 138-223 1-78 (78)
5 PF01169 UPF0016: Uncharacteri 99.8 2.3E-21 5.1E-26 153.6 5.9 70 266-335 1-72 (78)
6 KOG2881 Predicted membrane pro 99.6 2E-15 4.3E-20 143.5 5.6 85 135-229 206-290 (294)
7 COG4280 Predicted membrane pro 97.3 0.0019 4.2E-08 60.6 9.7 159 158-335 22-186 (236)
8 TIGR02840 spore_YtaF putative 97.0 0.0055 1.2E-07 56.6 10.3 49 176-234 38-86 (206)
9 PRK11469 hypothetical protein; 96.4 0.011 2.4E-07 54.1 7.2 45 179-234 48-92 (188)
10 PF01810 LysE: LysE type trans 94.6 0.18 3.9E-06 44.5 8.0 70 155-232 11-83 (191)
11 PF03741 TerC: Integral membra 93.1 1.4 2.9E-05 40.3 11.1 148 151-325 12-164 (183)
12 PF03596 Cad: Cadmium resistan 92.0 0.65 1.4E-05 43.1 7.6 52 167-229 25-76 (191)
13 COG1971 Predicted membrane pro 91.8 0.65 1.4E-05 43.2 7.3 45 179-234 48-92 (190)
14 TIGR00948 2a75 L-lysine export 91.4 2.5 5.4E-05 37.3 10.4 67 157-231 11-78 (177)
15 TIGR00145 FTR1 family protein. 89.4 5.2 0.00011 39.1 11.5 151 167-334 38-188 (283)
16 TIGR00949 2A76 The Resistance 89.3 2.2 4.7E-05 37.6 8.2 65 157-229 8-75 (185)
17 PF01914 MarC: MarC family int 89.1 4.3 9.4E-05 37.5 10.3 108 208-332 69-179 (203)
18 PF03239 FTR1: Iron permease F 87.8 8.2 0.00018 37.7 11.8 161 167-334 35-203 (306)
19 TIGR03716 R_switched_YkoY inte 85.8 2.8 6E-05 39.6 7.0 139 151-323 9-152 (215)
20 COG0730 Predicted permeases [G 83.3 7.2 0.00016 36.3 8.6 152 170-332 71-238 (258)
21 TIGR03718 R_switched_Alx integ 82.8 18 0.00039 36.0 11.5 66 151-229 77-147 (302)
22 PRK10995 inner membrane protei 82.5 2.3 5E-05 39.6 5.0 22 209-230 74-95 (221)
23 TIGR03717 R_switched_YjbE inte 79.6 15 0.00033 33.4 9.1 136 151-324 14-155 (176)
24 COG0861 TerC Membrane protein 76.8 44 0.00094 32.4 11.8 164 140-325 18-192 (254)
25 PRK09304 arginine exporter pro 76.2 24 0.00051 32.1 9.4 68 155-230 23-91 (207)
26 PF01925 TauE: Sulfite exporte 76.2 10 0.00023 34.2 7.1 34 299-332 195-228 (240)
27 PRK10621 hypothetical protein; 75.2 43 0.00093 31.6 11.2 50 170-229 75-124 (266)
28 TIGR00427 membrane protein, Ma 72.7 8.6 0.00019 35.6 5.7 52 169-229 42-93 (201)
29 PRK10019 nickel/cobalt efflux 72.6 18 0.0004 35.5 8.2 54 270-330 197-252 (279)
30 COG1280 RhtB Putative threonin 69.4 81 0.0018 28.9 11.3 69 153-230 22-94 (208)
31 PRK10520 rhtB homoserine/homos 68.9 80 0.0017 28.4 11.0 71 151-229 20-93 (205)
32 COG4280 Predicted membrane pro 67.7 7.6 0.00016 37.1 4.2 54 280-334 16-71 (236)
33 COG4300 CadD Predicted permeas 65.7 43 0.00093 31.6 8.6 68 152-230 18-88 (205)
34 PF01810 LysE: LysE type trans 64.2 35 0.00076 29.9 7.6 20 210-229 171-190 (191)
35 PF03741 TerC: Integral membra 63.7 33 0.00073 31.3 7.5 76 136-229 103-183 (183)
36 PRK11111 hypothetical protein; 60.2 7.7 0.00017 36.4 2.8 52 169-229 45-96 (214)
37 PRK10958 leucine export protei 58.9 1.2E+02 0.0025 27.8 10.3 67 156-231 29-99 (212)
38 TIGR00779 cad cadmium resistan 57.7 25 0.00053 33.0 5.6 55 164-229 21-75 (193)
39 PRK10229 threonine efflux syst 56.7 42 0.0009 30.2 6.9 74 148-230 17-93 (206)
40 PRK10323 cysteine/O-acetylseri 52.5 1.8E+02 0.0038 26.2 11.1 71 151-229 20-93 (195)
41 COG2095 MarC Multiple antibiot 52.1 24 0.00051 33.1 4.6 130 169-329 42-173 (203)
42 PF12270 Cyt_c_ox_IV: Cytochro 49.2 42 0.00092 29.9 5.4 82 213-311 42-125 (137)
43 PRK10599 calcium/sodium:proton 44.5 2E+02 0.0044 29.4 10.2 28 295-322 287-315 (366)
44 PRK10739 putative antibiotic t 43.8 40 0.00088 31.3 4.7 51 170-229 40-90 (197)
45 COG2814 AraJ Arabinose efflux 40.6 2.6E+02 0.0056 28.9 10.3 22 170-191 142-163 (394)
46 KOG1397 Ca2+/H+ antiporter VCX 40.3 79 0.0017 33.1 6.5 20 150-169 136-155 (441)
47 COG1971 Predicted membrane pro 36.9 44 0.00095 31.3 3.8 43 178-231 146-188 (190)
48 COG1283 NptA Na+/phosphate sym 32.0 2.7E+02 0.0058 30.1 9.1 95 210-316 7-106 (533)
49 COG3763 Uncharacterized protei 31.0 61 0.0013 26.1 3.2 27 304-330 8-34 (71)
50 KOG2325 Predicted transporter/ 28.6 7.4E+02 0.016 26.4 12.4 64 263-326 265-333 (488)
51 TIGR00704 NaPi_cotrn_rel Na/Pi 27.7 5E+02 0.011 25.8 9.6 102 212-324 131-237 (307)
52 PF13465 zf-H2C2_2: Zinc-finge 26.8 15 0.00032 23.2 -0.7 20 11-30 6-25 (26)
53 KOG3415 Putative Rab5-interact 25.4 3.5E+02 0.0077 23.9 7.1 17 148-164 33-49 (129)
54 KOG1278 Endosomal membrane pro 25.0 3.7E+02 0.0081 29.5 8.6 126 170-325 332-461 (628)
55 PF02659 DUF204: Domain of unk 23.7 50 0.0011 24.8 1.5 35 178-223 33-67 (67)
56 PF14045 YIEGIA: YIEGIA protei 22.0 2.4E+02 0.0052 28.2 6.1 45 177-234 34-78 (285)
57 PRK11469 hypothetical protein; 21.5 1.2E+02 0.0026 27.8 3.8 45 176-231 142-186 (188)
58 TIGR03716 R_switched_YkoY inte 21.1 1.9E+02 0.0041 27.4 5.1 74 145-231 99-175 (215)
59 COG0861 TerC Membrane protein 20.7 2E+02 0.0044 27.9 5.3 78 136-231 131-213 (254)
60 KOG4812 Golgi-associated prote 20.6 3.1E+02 0.0066 27.1 6.4 33 127-165 156-188 (262)
No 1
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.2e-48 Score=367.60 Aligned_cols=194 Identities=40% Similarity=0.602 Sum_probs=165.4
Q ss_pred cchhHHHHHHHHHHHHhhcCchHHHHHHHHHhccCCcEeehhHHHHHHHHHHHHHHHcccccccccccCccccCCCcchH
Q 019749 132 GDISRGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPID 211 (336)
Q Consensus 132 ~~~~~~fl~aF~lIFlAElGDKTQL~a~lLAaR~~~~~VflGa~lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~ 211 (336)
+++.++|..++.|||++|+||||||+|++|||||+|..||.|+..||++||++++++|+. .++.+|+++ +
T Consensus 63 ~s~~~~f~~SiSmI~vsEiGDKTFfiAAlmAmr~~R~~Vf~Ga~~AL~lMTiLS~~lG~a---ap~lipr~~-------T 132 (294)
T KOG2881|consen 63 SSFLQGFTASISMIFVSEIGDKTFFIAALMAMRYPRLTVFSGAMSALALMTILSVLLGWA---APNLIPRKY-------T 132 (294)
T ss_pred HHHHHHHHHhhheeeeeeccchHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHh---hhhhchHHH-------H
Confidence 357899999999999999999999999999999999999999999999999999999986 368899887 7
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCc--chHHHHHHHhhhhccC----------CCccc-----h----hh-HHHHHHH
Q 019749 212 DIAAVCLLVYFGVSTLLDAASTDGLKS--EDEQKEAELAVSEFSG----------NGAGI-----I----AA-ASTIIST 269 (336)
Q Consensus 212 ~i~AavLFl~FGl~tL~~a~~~~~~~~--eeE~~eae~~v~~~~~----------~~~g~-----~----~~-~~~f~~a 269 (336)
++++.+||++||+|+|+|++.+.+.+. |-||.|+|++.++... +..+. + .. -+.|+++
T Consensus 133 ~~~~t~LF~iFGlkmL~eg~~~~~~~~~eE~eEVe~el~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~t~ffspifika 212 (294)
T KOG2881|consen 133 YYLATALFLIFGLKMLKEGWEMSPSEGQEELEEVEAELAKREDELDRLEEGLPGSAETGSQKSKFRRKLTLFFSPIFIKA 212 (294)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHhccchhhhhhhcCCCCCccchhhhhhhHHHHHhccHHHHHH
Confidence 999999999999999999987644333 3344455544322110 11110 0 01 1478999
Q ss_pred HHHHHHHHhCChhHHHHHHHhhccCCceeehHHHHHHHHHHHHHHHHHHHhhhcccHHHHhhhccC
Q 019749 270 FTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKVYSNFNLS 335 (336)
Q Consensus 270 F~lvFLAE~GDKTQLaTiaLAA~~~p~~V~~Ga~lgl~l~t~laVl~G~~l~~~is~r~i~~~aG~ 335 (336)
|.++|++||||||||+||+|||+.+|++|++|+.+||.+||++||++|+++++|||+|++.+++|+
T Consensus 213 FsltF~aEwGDRSQlaTI~laA~en~~gV~~G~~iGH~lCT~lAVigGk~lAskIS~rtVt~~ggi 278 (294)
T KOG2881|consen 213 FSLTFLAEWGDRSQLATIALAADENPLGVAIGAIIGHALCTGLAVIGGKYLASKISVRTVTLIGGI 278 (294)
T ss_pred HHHHHHHHhccHHHHHHHHHhcccCcceeeeccHHHHHHHHHHHHhhhHHHhhhheeEEEEEecch
Confidence 999999999999999999999999999999999999999999999999999999999999999986
No 2
>COG2119 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=9.8e-46 Score=333.40 Aligned_cols=171 Identities=35% Similarity=0.490 Sum_probs=151.5
Q ss_pred hHHHHHHHHHHHHhhcCchHHHHHHHHHhccCCcEeehhHHHHHHHHHHHHHHHcccccccccccCccccCCCcchHHHH
Q 019749 135 SRGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIA 214 (336)
Q Consensus 135 ~~~fl~aF~lIFlAElGDKTQL~a~lLAaR~~~~~VflGa~lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~ 214 (336)
++.|+.+..+|+++|+|||||+++++||+||+|++||.|+.+|++.||.+++++|++ .+..+|+++ .++.
T Consensus 1 l~~~~~s~~~v~laEiGDKT~lia~llA~r~~~~~v~~g~~~a~~~m~~la~~vG~~---~~~~~~~~~-------~~~~ 70 (190)
T COG2119 1 LEALLVSLLMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHA---AASLLPERP-------LAWA 70 (190)
T ss_pred ChhHHHHHHHHHHHHhccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH---HhccCchhH-------HHHH
Confidence 357889999999999999999999999999998899999999999999999999997 467889886 7999
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHhhhhccCCCccchhhHHHHHHHHHHHHHHHhCChhHHHHHHHhhccC
Q 019749 215 AVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIALAAASS 294 (336)
Q Consensus 215 AavLFl~FGl~tL~~a~~~~~~~~eeE~~eae~~v~~~~~~~~g~~~~~~~f~~aF~lvFLAE~GDKTQLaTiaLAA~~~ 294 (336)
.+++|++||+|+++|+. +++|+.++ . ++..+|+++|+++|++|||||||++||+||++++
T Consensus 71 ~~~~Flafav~~l~edk------~~~~e~~~------~--------~~~~~f~~tfi~~FlaE~GDKTQiATIaLaA~~~ 130 (190)
T COG2119 71 SGVLFLAFAVWMLIEDK------EDDEEAQA------A--------SPRGVFVTTFITFFLAELGDKTQIATIALAADYH 130 (190)
T ss_pred HHHHHHHHHHHHhcccc------cccccccc------c--------ccccHHHHHHHHHHHHHhccHHHHHHHHHhhcCC
Confidence 99999999999999722 22222110 0 1235899999999999999999999999999976
Q ss_pred -CceeehHHHHHHHHHHHHHHHHHHHhhhcccHHHHhhhccC
Q 019749 295 -PLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKVYSNFNLS 335 (336)
Q Consensus 295 -p~~V~~Ga~lgl~l~t~laVl~G~~l~~~is~r~i~~~aG~ 335 (336)
||.|++|+++||++|++++|++|+++++|+|+|.++.++|.
T Consensus 131 ~~~~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aal 172 (190)
T COG2119 131 SPWAVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAAL 172 (190)
T ss_pred CceeeehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 69999999999999999999999999999999999999874
No 3
>COG2119 Predicted membrane protein [Function unknown]
Probab=99.87 E-value=4.5e-22 Score=180.21 Aligned_cols=122 Identities=25% Similarity=0.292 Sum_probs=104.5
Q ss_pred chhHHHHHHHHHHhhhccccccccccccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCchHHHHHHHHHhccCC-cE
Q 019749 91 DSGLIKFVMFFGLLTLQGSQTAVAAVDFASGLQSFPFLGDLGDISRGFASAFLLIFFSELGDKTFFIAALLAARNSA-AT 169 (336)
Q Consensus 91 ~~~~~~~~l~~~fl~~~~~~~~~~~~d~~~~~~~~~~~g~~~~~~~~fl~aF~lIFlAElGDKTQL~a~lLAaR~~~-~~ 169 (336)
|.++++|+.+.+|+.|+.+.+..|..| +++..+- +-...|+++|+++|++|||||||++|++||++|+. +.
T Consensus 63 ~~~~~~~~~~~~Flafav~~l~edk~~---~~e~~~~-----~~~~~f~~tfi~~FlaE~GDKTQiATIaLaA~~~~~~~ 134 (190)
T COG2119 63 PERPLAWASGVLFLAFAVWMLIEDKED---DEEAQAA-----SPRGVFVTTFITFFLAELGDKTQIATIALAADYHSPWA 134 (190)
T ss_pred chhHHHHHHHHHHHHHHHHHhcccccc---ccccccc-----ccccHHHHHHHHHHHHHhccHHHHHHHHHhhcCCCcee
Confidence 789999999999999999777655322 3333211 12469999999999999999999999999999998 45
Q ss_pred eehhHHHHHHHHHHHHHHHcccccccccccCccccCCCcchHHHHHHHHHHHHHHHHhhhh
Q 019749 170 VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA 230 (336)
Q Consensus 170 VflGa~lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FGl~tL~~a 230 (336)
||+|+.+|++++++++|++|++ +.+++|++. .+.+++++|++||+..+|+.
T Consensus 135 V~~Gt~lg~~l~s~laVl~G~~---ia~ki~~r~-------l~~~aallFl~fal~~~~~~ 185 (190)
T COG2119 135 VFAGTTLGMILASVLAVLLGKL---IAGKLPERL-------LRFIAALLFLIFALVLLWQV 185 (190)
T ss_pred eehhhHHHHHHHHHHHHHHHHH---HHccCCHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999996 689999987 68899999999999999973
No 4
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=99.84 E-value=1.2e-21 Score=155.16 Aligned_cols=76 Identities=43% Similarity=0.602 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhhcCchHHHHHHHHHhcc--CCcEeehhHHHHHHHHHHHHHHHcccccccccccCccccCCCcchHHHHH
Q 019749 138 FASAFLLIFFSELGDKTFFIAALLAARN--SAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAA 215 (336)
Q Consensus 138 fl~aF~lIFlAElGDKTQL~a~lLAaR~--~~~~VflGa~lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~A 215 (336)
|+++|.++|++|+|||||++++.||+|| +++.|++|+.+|++++|+++|++|++ +.+++|+++ .++++
T Consensus 1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~---l~~~ip~~~-------i~~~~ 70 (78)
T PF01169_consen 1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSW---LASRIPERY-------IKWVA 70 (78)
T ss_pred CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCHHH-------HHHHH
Confidence 5789999999999999999999999999 44569999999999999999999997 578999987 79999
Q ss_pred HHHHHHHH
Q 019749 216 VCLLVYFG 223 (336)
Q Consensus 216 avLFl~FG 223 (336)
+++|++||
T Consensus 71 ~~lFl~fG 78 (78)
T PF01169_consen 71 GALFLLFG 78 (78)
T ss_pred HHHHHHHC
Confidence 99999987
No 5
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=99.84 E-value=2.3e-21 Score=153.60 Aligned_cols=70 Identities=40% Similarity=0.501 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHhhcc--CCceeehHHHHHHHHHHHHHHHHHHHhhhcccHHHHhhhccC
Q 019749 266 IISTFTLVFVAEWGDKSFFSTIALAAAS--SPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKVYSNFNLS 335 (336)
Q Consensus 266 f~~aF~lvFLAE~GDKTQLaTiaLAA~~--~p~~V~~Ga~lgl~l~t~laVl~G~~l~~~is~r~i~~~aG~ 335 (336)
|+++|.++|+||||||||++|++||++| +|+.|++|+++|++++++++|++|+++.+++|+|++++++|.
T Consensus 1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~ 72 (78)
T PF01169_consen 1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGA 72 (78)
T ss_pred CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 5789999999999999999999999999 899999999999999999999999999999999999999874
No 6
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=99.57 E-value=2e-15 Score=143.51 Aligned_cols=85 Identities=27% Similarity=0.360 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHhhcCchHHHHHHHHHhccCCcEeehhHHHHHHHHHHHHHHHcccccccccccCccccCCCcchHHHH
Q 019749 135 SRGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIA 214 (336)
Q Consensus 135 ~~~fl~aF~lIFlAElGDKTQL~a~lLAaR~~~~~VflGa~lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~ 214 (336)
...|+.+|.++|++|||||+|++|+.||++-+++.|++|+.+|+.+||.++|+.|+. ++++|+.|. ..++
T Consensus 206 spifikaFsltF~aEwGDRSQlaTI~laA~en~~gV~~G~~iGH~lCT~lAVigGk~---lAskIS~rt-------Vt~~ 275 (294)
T KOG2881|consen 206 SPIFIKAFSLTFLAEWGDRSQLATIALAADENPLGVAIGAIIGHALCTGLAVIGGKY---LASKISVRT-------VTLI 275 (294)
T ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHHhcccCcceeeeccHHHHHHHHHHHHhhhHH---HhhhheeEE-------EEEe
Confidence 348999999999999999999999999999999999999999999999999999995 789999886 5788
Q ss_pred HHHHHHHHHHHHhhh
Q 019749 215 AVCLLVYFGVSTLLD 229 (336)
Q Consensus 215 AavLFl~FGl~tL~~ 229 (336)
++++|++||+..++.
T Consensus 276 ggi~Fi~Fgl~~i~~ 290 (294)
T KOG2881|consen 276 GGILFIIFGLVYIFQ 290 (294)
T ss_pred cchhHHHHHHHHHhc
Confidence 899999999999987
No 7
>COG4280 Predicted membrane protein [Function unknown]
Probab=97.27 E-value=0.0019 Score=60.55 Aligned_cols=159 Identities=25% Similarity=0.312 Sum_probs=100.4
Q ss_pred HHHHHhc--cCCcEeehhHHHHHHHHHHHHHHHcccccccccccCccccCCCcchHHHHHHHHHHHHHHHHhhhhhcC-C
Q 019749 158 AALLAAR--NSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAST-D 234 (336)
Q Consensus 158 a~lLAaR--~~~~~VflGa~lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FGl~tL~~a~~~-~ 234 (336)
++..+-. |+.+.-++|+.+|+++.-.++..+|..+ ..+|..+ .+++++++.+.||-.-++.+.+. .
T Consensus 22 aIa~avg~~~~wr~al~ga~lglalvl~l~lvlGk~L----~lvPln~-------lqiv~gvLLllFG~rw~Rsavrr~a 90 (236)
T COG4280 22 AIAAAVGNIYKWRLALIGAVLGLALVLILTLVLGKLL----YLVPLNY-------LQIVSGVLLLLFGYRWIRSAVRRFA 90 (236)
T ss_pred HHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHccce----eeeechH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444433 3344489999999999999999999974 4678775 68999999999999988876431 1
Q ss_pred CC-CcchHHH-HHHHhhhhccCCCccchhhHHHHHHHHHHHHHHHhCChhHHHHHHHhhcc-CCceeehHHHHHHHHHHH
Q 019749 235 GL-KSEDEQK-EAELAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIALAAAS-SPLGVIGGALAGHVVATL 311 (336)
Q Consensus 235 ~~-~~eeE~~-eae~~v~~~~~~~~g~~~~~~~f~~aF~lvFLAE~GDKTQLaTiaLAA~~-~p~~V~~Ga~lgl~l~t~ 311 (336)
+. +.-+||+ |+....++. ..|. + .-.+..+|-.+.+ | |=---+..++|.+.+ .+..-..|+..+.++.-.
T Consensus 91 g~rkg~~ee~leE~~~ldq~---e~g~-~-~la~l~~fk~v~L-e-glEv~~iVialgaa~sqwleAi~gagfA~vlvlv 163 (236)
T COG4280 91 GIRKGGGEEKLEEGIVLDQE---EEGF-S-KLALLVVFKVVAL-E-GLEVSLIVIALGAASSQWLEAIMGAGFASVLVLV 163 (236)
T ss_pred chhccCchhhHhhhhhcccc---cccc-h-hhhHHHHhHHHHH-h-hheeeeeeeeechhhhHHHHHHHHHHHHHHHHHH
Confidence 11 1111222 222222221 1121 1 1123333322222 1 222335566676664 466778888888888888
Q ss_pred HHHHHHHHhhhcccHHHHhhhccC
Q 019749 312 LAVLGGSLLGTFLSEKVYSNFNLS 335 (336)
Q Consensus 312 laVl~G~~l~~~is~r~i~~~aG~ 335 (336)
++.++-+.+++ +|++.+|..+|.
T Consensus 164 l~~~lh~plar-vpe~~lKfvag~ 186 (236)
T COG4280 164 LTAILHSPLAR-VPEPHLKFVAGA 186 (236)
T ss_pred HHHHhccHHhh-CCchhHHHHHHH
Confidence 88888888854 999999998874
No 8
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=97.04 E-value=0.0055 Score=56.62 Aligned_cols=49 Identities=20% Similarity=0.379 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHcccccccccccCccccCCCcchHHHHHHHHHHHHHHHHhhhhhcCC
Q 019749 176 GALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTD 234 (336)
Q Consensus 176 lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FGl~tL~~a~~~~ 234 (336)
+...+|+.++..+|+. +.+++|.++ .++++++++++.|+++++++++.+
T Consensus 38 ~~~~~~~~lg~~~G~~---~~~~i~~~~-------~~~ig~~iLi~iG~~mi~~~~~~~ 86 (206)
T TIGR02840 38 VISGLFIFISMLLGKF---LAKFLPPKV-------TEILGAFILIAIGIWIIYNAFRPK 86 (206)
T ss_pred HHHHHHHHHHHHHHHH---HHHHhchhh-------HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445899999999986 567888765 699999999999999999998644
No 9
>PRK11469 hypothetical protein; Provisional
Probab=96.38 E-value=0.011 Score=54.06 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=35.9
Q ss_pred HHHHHHHHHHcccccccccccCccccCCCcchHHHHHHHHHHHHHHHHhhhhhcCC
Q 019749 179 AAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTD 234 (336)
Q Consensus 179 ~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FGl~tL~~a~~~~ 234 (336)
.+|+.++-.+|+. +.+++|. + .+|++.+++++.|.||++|+++.+
T Consensus 48 ~~m~~~g~~~G~~---l~~~i~~-~-------~~~i~~~lL~~lG~~mi~e~~~~~ 92 (188)
T PRK11469 48 TLTPLIGWGMGML---ASRFVLE-W-------NHWIAFVLLIFLGGRMIIEGFRGA 92 (188)
T ss_pred HHHHHHHHHHHHH---HHHHHHH-H-------HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6778888888886 3566664 3 699999999999999999988643
No 10
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=94.57 E-value=0.18 Score=44.46 Aligned_cols=70 Identities=16% Similarity=0.104 Sum_probs=48.8
Q ss_pred HHHHHHHHhccCCcE---eehhHHHHHHHHHHHHHHHcccccccccccCccccCCCcchHHHHHHHHHHHHHHHHhhhhh
Q 019749 155 FFIAALLAARNSAAT---VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 231 (336)
Q Consensus 155 QL~a~lLAaR~~~~~---VflGa~lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FGl~tL~~a~ 231 (336)
.+..+--+++++++. +.+|...+-++...++++.-.. +.+..|.- ..+.++++++.++++|.++++...
T Consensus 11 ~~~~i~~~~~~G~~~~~~~~~G~~~~~~i~~~~~~~g~~~---l~~~~~~~-----~~~l~~~G~~~L~~lg~~~~~~~~ 82 (191)
T PF01810_consen 11 NLLVISNGLRKGFKAGLPVALGAALGDLIYILLAVFGLSA---LLKSSPWL-----FMILKLLGALYLLYLGYKLLRSKF 82 (191)
T ss_pred HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhChHH-----HHHHHHHHHHHHHHHHHHHHhccc
Confidence 345566677777543 7889999988888777776654 22333332 235789999999999999999744
Q ss_pred c
Q 019749 232 S 232 (336)
Q Consensus 232 ~ 232 (336)
+
T Consensus 83 ~ 83 (191)
T PF01810_consen 83 S 83 (191)
T ss_pred C
Confidence 3
No 11
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=93.10 E-value=1.4 Score=40.33 Aligned_cols=148 Identities=19% Similarity=0.277 Sum_probs=81.2
Q ss_pred CchHHHHHHHHHh---ccCCcEeehhHHHHHHHHHHHHHHHcccccccccccCccccCCCcchHHHHHHHHHHHHHHHHh
Q 019749 151 GDKTFFIAALLAA---RNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTL 227 (336)
Q Consensus 151 GDKTQL~a~lLAa---R~~~~~VflGa~lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FGl~tL 227 (336)
+|+=.+++++... +++++..+.|...|+++-.++-......+ +..| +..+++++..++-|.+.+
T Consensus 12 ~DN~~vi~~~~~~lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll----~~~~---------~i~~igG~~Ll~~a~k~~ 78 (183)
T PF03741_consen 12 IDNAFVIAMIFRKLPPEQRRKALFWGIIGAIVLRIIFIFLASWLL----SIFP---------WILLIGGLFLLYIAIKLL 78 (183)
T ss_pred hhHHHHHHHHHhCCCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHH----HHHH---------HHHHHHHHHHHHHHHHHH
Confidence 4555555544332 33456799999999976666555544432 2212 356777777777777777
Q ss_pred hhhhcCCCCCcchHHHHHHHhhhhccCCCccchhhHHHHHHHHHHHHHHHh--CChhHHHHHHHhhccCCceeehHHHHH
Q 019749 228 LDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIAAASTIISTFTLVFVAEW--GDKSFFSTIALAAASSPLGVIGGALAG 305 (336)
Q Consensus 228 ~~a~~~~~~~~eeE~~eae~~v~~~~~~~~g~~~~~~~f~~aF~lvFLAE~--GDKTQLaTiaLAA~~~p~~V~~Ga~lg 305 (336)
++.. ++|+|+.+.+...+... . ....++.+...+-++-. -=-+=+|.++++ .+++.++.|..++
T Consensus 79 ~~~~-----~~d~~~~~~~~~~~~~~----~---~~~~~~~~v~~I~~~DlvfSlDSV~a~~~it--~~~~iv~~g~i~s 144 (183)
T PF03741_consen 79 HEER-----DEDPENAEVEEEKKFFP----V---SKSSLWLAVIQIELADLVFSLDSVLAAVGIT--DDFFIVITGNIIS 144 (183)
T ss_pred Hhcc-----ccccchhhhhhhhcccc----c---hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHh--hhHHHHHHHHHHH
Confidence 7632 11111111111000100 0 01234444433332221 123556777776 7889999999998
Q ss_pred HHHHHHHHHHHHHHhhhccc
Q 019749 306 HVVATLLAVLGGSLLGTFLS 325 (336)
Q Consensus 306 l~l~t~laVl~G~~l~~~is 325 (336)
...--..+-+..+.+.++-.
T Consensus 145 i~~m~~~~~~~~~~l~~~p~ 164 (183)
T PF03741_consen 145 ILLMRFLSFLLAKLLERFPY 164 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88887777777777766533
No 12
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=92.01 E-value=0.65 Score=43.05 Aligned_cols=52 Identities=13% Similarity=0.315 Sum_probs=39.2
Q ss_pred CcEeehhHHHHHHHHHHHHHHHcccccccccccCccccCCCcchHHHHHHHHHHHHHHHHhhh
Q 019749 167 AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 229 (336)
Q Consensus 167 ~~~VflGa~lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FGl~tL~~ 229 (336)
++.|++|=.+|..+.-++|.+.+.. ...+|+.+ +..+++ .+=+++|++.++.
T Consensus 25 ~~~I~~GqylG~~~Lv~~Sl~~~~~----l~~ip~~w------iLGlLG-liPI~lGi~~l~~ 76 (191)
T PF03596_consen 25 RRQIVIGQYLGFTILVLASLLGAFG----LLFIPPEW------ILGLLG-LIPIYLGIKALFS 76 (191)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHH----HHhCCHHH------HHHHHH-HHHHHHHHHHHHc
Confidence 4559999999999998889888865 34788765 235554 4568999998875
No 13
>COG1971 Predicted membrane protein [Function unknown]
Probab=91.80 E-value=0.65 Score=43.24 Aligned_cols=45 Identities=16% Similarity=0.400 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcccccccccccCccccCCCcchHHHHHHHHHHHHHHHHhhhhhcCC
Q 019749 179 AAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTD 234 (336)
Q Consensus 179 ~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FGl~tL~~a~~~~ 234 (336)
++|.++.-..|+.+ ..++. . +.+|++.+++++.|+||++++.+++
T Consensus 48 ~i~pliG~~~g~~~---s~~i~-~-------~~~wigf~lL~~lG~~mI~e~f~~~ 92 (190)
T COG1971 48 AIMPLIGWFIGKFL---STFIA-E-------WAHWIGFVLLIILGLKMIIEGFKNE 92 (190)
T ss_pred HHHHHHHHHHHHHH---HHHHH-H-------HHHHHHHHHHHHHHHHHHHHHhchh
Confidence 44555555666542 22332 2 3799999999999999999988764
No 14
>TIGR00948 2a75 L-lysine exporter.
Probab=91.42 E-value=2.5 Score=37.26 Aligned_cols=67 Identities=10% Similarity=0.036 Sum_probs=44.1
Q ss_pred HHHHHHhccCCcE-eehhHHHHHHHHHHHHHHHcccccccccccCccccCCCcchHHHHHHHHHHHHHHHHhhhhh
Q 019749 157 IAALLAARNSAAT-VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 231 (336)
Q Consensus 157 ~a~lLAaR~~~~~-VflGa~lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FGl~tL~~a~ 231 (336)
..+..++++++-. ..+|...|.++...++++.-..+ -...|.-. .+.++++++-.+++|..+++...
T Consensus 11 ~vi~~~~~~~~g~~~~~G~~~g~~i~~~~~~~Gl~~l---l~~~p~~~-----~~l~~~Ga~YLlylg~~~~r~~~ 78 (177)
T TIGR00948 11 FVLRQGIRREHVLLIVALCCICDLVLIAAGVFGVAAL---LAASPILL-----AVLTWGGALFLLWYGFLAAKTAW 78 (177)
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCHHHH-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555543 77888888888877666655432 22334332 25788988877889999998753
No 15
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=89.42 E-value=5.2 Score=39.14 Aligned_cols=151 Identities=21% Similarity=0.190 Sum_probs=74.0
Q ss_pred CcEeehhHHHHHHHHHHHHHHHcccccccccccCccccCCCcchHHHHHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHH
Q 019749 167 AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAE 246 (336)
Q Consensus 167 ~~~VflGa~lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FGl~tL~~a~~~~~~~~eeE~~eae 246 (336)
+++|+.|+.+|+++.-++++++-..+..++.-..+..- .-+..++|+++....++||...+.+.. ++-|++ .+
T Consensus 38 ~~~V~~G~~~gl~~s~~~a~~~~~~~~~~~~~~~~el~---eg~~~lvAv~~l~~m~~Wm~~~~~~~~---~~i~~~-~~ 110 (283)
T TIGR00145 38 RGWVWVGVLAGFAACLAIGIGVIGAYGSLQKDEFKELL---EGIFGVIAVVMLSYMGLWMLRMQRKWR---VKIERQ-LV 110 (283)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-HH
Confidence 45799999999999888777765532111111101100 113567778888999999996532211 111111 11
Q ss_pred HhhhhccCCCccchhhHHHHHHHHHHHHHHHhCChhHHHHHHHhhccCCceeehHHHHHHHHHHHHHHHHHHHhhhcccH
Q 019749 247 LAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLSE 326 (336)
Q Consensus 247 ~~v~~~~~~~~g~~~~~~~f~~aF~lvFLAE~GDKTQLaTiaLAA~~~p~~V~~Ga~lgl~l~t~laVl~G~~l~~~is~ 326 (336)
.+++. +. +.+..++.+|+.++ =| |=-|=+=-.+.+...+...+..|..+|.+++.+++.+.=+. +.|+|.
T Consensus 111 ~al~~----~~---~~~al~~l~flaV~-RE-G~EtVlF~~g~~~~~~~~~~~gg~~~Gl~~~~~~g~li~~~-~~~i~l 180 (283)
T TIGR00145 111 QALKR----KR---SGWAIALIAFIAVV-RE-GLETVLFLAGFQQGSHATAYIGPAVAGLIVAVVVGVLLYRG-GSRLSL 180 (283)
T ss_pred HHHhc----Cc---chhHHHHHHHHHHH-Hh-hhHHHHhHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHH-HhhCCH
Confidence 11111 00 11233334443322 00 22222111222222222223335888888887777766544 477998
Q ss_pred HHHhhhcc
Q 019749 327 KVYSNFNL 334 (336)
Q Consensus 327 r~i~~~aG 334 (336)
|..=.+++
T Consensus 181 ~~FF~~t~ 188 (283)
T TIGR00145 181 KIFFILSS 188 (283)
T ss_pred HHHHHHHH
Confidence 87655543
No 16
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=89.31 E-value=2.2 Score=37.58 Aligned_cols=65 Identities=14% Similarity=0.103 Sum_probs=41.7
Q ss_pred HHHHHHhccCCc--E-eehhHHHHHHHHHHHHHHHcccccccccccCccccCCCcchHHHHHHHHHHHHHHHHhhh
Q 019749 157 IAALLAARNSAA--T-VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 229 (336)
Q Consensus 157 ~a~lLAaR~~~~--~-VflGa~lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FGl~tL~~ 229 (336)
+++.-+++++++ + +.+|..+|.++...++++.-.. +-+..|.-. .+.++++++..+++|..++++
T Consensus 8 ~~~~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~Gl~~---l~~~~~~~~-----~~l~~~Ga~yLl~lg~~~~~~ 75 (185)
T TIGR00949 8 VVMQTSLSSGRRAGVLTILGIALGDAIWIVLSLLGLAV---LISKSVILF-----TVIKWLGGAYLIYLGIKMLRK 75 (185)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHH-----HHHHHHHHHHHHHHHHHHHHc
Confidence 344455555433 3 7788899988887777763332 122334322 257889888788899998875
No 17
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=89.05 E-value=4.3 Score=37.50 Aligned_cols=108 Identities=19% Similarity=0.189 Sum_probs=60.1
Q ss_pred cchHHHHHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHhhhhccCCCccchhhHHHHHHHHHHHHHHHhCChhHHHHH
Q 019749 208 LPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTI 287 (336)
Q Consensus 208 ~~v~~i~AavLFl~FGl~tL~~a~~~~~~~~eeE~~eae~~v~~~~~~~~g~~~~~~~f~~aF~lvFLAE~GDKTQLaTi 287 (336)
++-.+++++++++..|+.|+....+.++ ..++|.+|+++ .++. . ..++.. =.+ -|.-|=-+++
T Consensus 69 l~af~IaGGiiL~~ia~~ml~~~~~~~~-~~~~~~~~~~~-~~~~-----a----i~PLa~----Pll--aGPG~It~vi 131 (203)
T PF01914_consen 69 LPAFRIAGGIILFLIALEMLFGSPSSEK-SSPDEKEEAKD-AEDI-----A----IVPLAI----PLL--AGPGTITTVI 131 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcccc-cccchhhhhcc-cccc-----e----ecccch----hhc--cChHHHHHHH
Confidence 3447999999999999999986332211 11111111111 0010 0 001000 011 2555555666
Q ss_pred HHhhccCC---ceeehHHHHHHHHHHHHHHHHHHHhhhcccHHHHhhh
Q 019749 288 ALAAASSP---LGVIGGALAGHVVATLLAVLGGSLLGTFLSEKVYSNF 332 (336)
Q Consensus 288 aLAA~~~p---~~V~~Ga~lgl~l~t~laVl~G~~l~~~is~r~i~~~ 332 (336)
.++++++. ..+.+++.+...+.+.+....++++.+++.+.-++.+
T Consensus 132 ~~~~~~~~~~~~~~~~~ai~~~~~~~~l~l~~a~~i~~~lG~~g~~vi 179 (203)
T PF01914_consen 132 VLSAEAGSLQSLLIVLIAILLVALITYLILRFADKIMRRLGKTGLQVI 179 (203)
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHH
Confidence 67776553 3455666666777777888888888888887665543
No 18
>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake. Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane
Probab=87.81 E-value=8.2 Score=37.66 Aligned_cols=161 Identities=21% Similarity=0.153 Sum_probs=84.8
Q ss_pred CcEeehhHHHHHHHHHHHHHHHcccccccccc---cCccccCCCcchHHHHHHHHHHHHHHHHhhhhhcCCCCCcchHHH
Q 019749 167 AATVFAGTFGALAAMTVISVILGRTFHYVDEI---LPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQK 243 (336)
Q Consensus 167 ~~~VflGa~lAL~l~t~LaVllG~~l~~i~~~---LP~~~~~~~~~v~~i~AavLFl~FGl~tL~~a~~~~~~~~eeE~~ 243 (336)
+++|+.|+..|++..-.+++.+-.....+... ..+... .-....++.++-....+|+.+...++.+ +-+++.+
T Consensus 35 ~~~V~~G~~~g~~~s~~~~~~~~~~~~~~~~~~~~~~~e~~---eg~~~liA~~li~~m~~wm~~~~~~~~~-~~~~~~~ 110 (306)
T PF03239_consen 35 RRWVWLGVAAGLVASLVIGAVFAVIFYTLSGDYWGISEELF---EGAISLIAVALITWMVFWMRRHGRKMKG-EWEDKLA 110 (306)
T ss_pred hheeeecHhHHHHHHHHHHHHHHHHHHhhccchhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhch-hHHHHHH
Confidence 47899999999999998888877653222210 000110 0023455566677888888875322221 1111110
Q ss_pred HHHHhhhh---ccCCCccchhhHHHHHHHHHHHHHHHhCChhHHHHHHHhhccC--CceeehHHHHHHHHHHHHHHHHHH
Q 019749 244 EAELAVSE---FSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIALAAASS--PLGVIGGALAGHVVATLLAVLGGS 318 (336)
Q Consensus 244 eae~~v~~---~~~~~~g~~~~~~~f~~aF~lvFLAE~GDKTQLaTiaLAA~~~--p~~V~~Ga~lgl~l~t~laVl~G~ 318 (336)
..-...++ .....++....+..+..+|+.+ +=| |=-|=+-..++.+..+ ...+..|+.+|.+++.+++++.-+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~afl~v-lRE-G~E~vLfl~a~~~~~~~~~~~~~~g~~~G~~~a~~~~~~~~~ 188 (306)
T PF03239_consen 111 KALSSGSEDARASQKDEGGGSKWALFLLAFLIV-LRE-GLEAVLFLAALAASLRKDAASILLGAILGIAAAVVLGWLLYR 188 (306)
T ss_pred HHHhhccchhhhhhhccccchhhHHHHHHHHHH-HHh-hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 0001111112234445555322 111 4455555556666533 677888888898888888888866
Q ss_pred HhhhcccHHHHhhhcc
Q 019749 319 LLGTFLSEKVYSNFNL 334 (336)
Q Consensus 319 ~l~~~is~r~i~~~aG 334 (336)
.. .++|.+..-.++|
T Consensus 189 ~~-~~i~~~~~f~~~~ 203 (306)
T PF03239_consen 189 GL-IRISLRSFFIITG 203 (306)
T ss_pred HH-HhcChHHHHHHHH
Confidence 54 5588777665554
No 19
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=85.75 E-value=2.8 Score=39.56 Aligned_cols=139 Identities=19% Similarity=0.249 Sum_probs=72.5
Q ss_pred CchHHHHHHHHH---hccCCcEeehhHHHHHHHHHHHHHHHcccccccccccCccccCCCcchHHHHHHHHHHHHHHHHh
Q 019749 151 GDKTFFIAALLA---ARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTL 227 (336)
Q Consensus 151 GDKTQL~a~lLA---aR~~~~~VflGa~lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FGl~tL 227 (336)
+|+-.+++++-. .+++++..+.|...|+++--++-.+....+ + +| ..++++++..++-|..++
T Consensus 9 ~DN~~via~~~~~LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll----~-~~---------~l~~iGG~~Ll~~~~k~l 74 (215)
T TIGR03716 9 ADNALVLAVMVKHLPEKQRKKALFYGLIGAYVFRFIALFLASFLI----K-FW---------WIKAIGALYLLYLAIKHF 74 (215)
T ss_pred hhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-HH---------HHHHHHHHHHHHHHHHHH
Confidence 355444444322 233455689999999887766655544322 1 22 246666666666677776
Q ss_pred hhhhcCCCCCcchHHHHHHHhhhhccCCCccchhhHHHHHHHHHHHHHHH--hCChhHHHHHHHhhccCCceeehHHHHH
Q 019749 228 LDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIAAASTIISTFTLVFVAE--WGDKSFFSTIALAAASSPLGVIGGALAG 305 (336)
Q Consensus 228 ~~a~~~~~~~~eeE~~eae~~v~~~~~~~~g~~~~~~~f~~aF~lvFLAE--~GDKTQLaTiaLAA~~~p~~V~~Ga~lg 305 (336)
++ +++++++ ++.+ . .++ + ..++.+...+-++- |-=-+=+|.++++ .+++-++.|..++
T Consensus 75 ~~----~~~~~~~--~~~~----~-~~~--~-----~~f~~av~~I~~~DlvFSlDSV~A~~git--~~~~ii~~g~~~s 134 (215)
T TIGR03716 75 RK----KKKGKED--EEAE----K-KKA--H-----SGFWRTVLKVELMDIAFSVDSILAAVALS--GQFWVVFLGGIIG 134 (215)
T ss_pred Hh----ccccccc--cccc----c-ccc--c-----chHHHHHHHHHHHHHHHHhhhHHHHHHhc--cChHHHHHHHHHH
Confidence 64 2111111 1100 0 001 1 12344433332221 1223456666664 6888888888887
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 019749 306 HVVATLLAVLGGSLLGTF 323 (336)
Q Consensus 306 l~l~t~laVl~G~~l~~~ 323 (336)
...--..+-+..+++.++
T Consensus 135 Il~lr~~s~~l~~li~r~ 152 (215)
T TIGR03716 135 ILIMRFAATIFVKLLERF 152 (215)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 776666666666666554
No 20
>COG0730 Predicted permeases [General function prediction only]
Probab=83.32 E-value=7.2 Score=36.27 Aligned_cols=152 Identities=20% Similarity=0.131 Sum_probs=74.1
Q ss_pred eehhHHHHHHHHHHHHHHHcccccccccccCccccCCCcchHHHHHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHhh
Q 019749 170 VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAV 249 (336)
Q Consensus 170 VflGa~lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FGl~tL~~a~~~~~~~~eeE~~eae~~v 249 (336)
+-.-...-+.....+++.+|.+ +..++|.+. .+..-+++.++.++++++...... .++++++.......
T Consensus 71 v~~~~~~~l~~~~~~G~~lG~~---l~~~~~~~~-------l~~~~~~~ll~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 139 (258)
T COG0730 71 VDWKLALILLLGALIGAFLGAL---LALLLPAEL-------LKLLFGLLLLLLALYMLLGPRLAK-AEDRAARLRPLLFA 139 (258)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH---HHHhCCHHH-------HHHHHHHHHHHHHHHHHHhccccc-ccccccccCcchhH
Confidence 6666666677777888888854 456778765 344345577888888888733200 01110000000000
Q ss_pred -hhccCCCccchh----hHHHHHHHHHHHHHHHhCChhHHHHHHH----hhc-----cCC-ceeehHHHH-HHHHHHHHH
Q 019749 250 -SEFSGNGAGIIA----AASTIISTFTLVFVAEWGDKSFFSTIAL----AAA-----SSP-LGVIGGALA-GHVVATLLA 313 (336)
Q Consensus 250 -~~~~~~~~g~~~----~~~~f~~aF~lvFLAE~GDKTQLaTiaL----AA~-----~~p-~~V~~Ga~l-gl~l~t~la 313 (336)
...-+-..|..+ .-.-+...-.+..+....+|--.+|-.. .+. |-. .+..--... .+.+.+.++
T Consensus 140 ~~~~~g~~~G~~sG~~G~GgG~~~vp~l~~~~~~~~~~~~~ts~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~g~~~G 219 (258)
T COG0730 140 LALLIGFLAGFLSGLFGVGGGFGIVPALLLLLLLPLKLAVATSLAIILNTASNGAALYLFALGAVDWPLALLLAVGSILG 219 (258)
T ss_pred HHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHH
Confidence 000000001000 0001222233334444443333222211 110 111 111111122 788899999
Q ss_pred HHHHHHhhhcccHHHHhhh
Q 019749 314 VLGGSLLGTFLSEKVYSNF 332 (336)
Q Consensus 314 Vl~G~~l~~~is~r~i~~~ 332 (336)
.+.|.++.++++++.++++
T Consensus 220 ~~lG~~l~~~~~~~~lr~~ 238 (258)
T COG0730 220 AYLGARLARRLSPKVLRRL 238 (258)
T ss_pred HHHHHHHHHhcCHHHHHHH
Confidence 9999999999999999875
No 21
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=82.78 E-value=18 Score=35.97 Aligned_cols=66 Identities=21% Similarity=0.315 Sum_probs=39.8
Q ss_pred CchHHHHHHHHHh-----ccCCcEeehhHHHHHHHHHHHHHHHcccccccccccCccccCCCcchHHHHHHHHHHHHHHH
Q 019749 151 GDKTFFIAALLAA-----RNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVS 225 (336)
Q Consensus 151 GDKTQL~a~lLAa-----R~~~~~VflGa~lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FGl~ 225 (336)
+|+-+..+++.+. +++++..+.|...|++.=.+ -+.+|.++ -+.+| ...+++++..++-|.+
T Consensus 77 vDN~fV~~~if~~f~vP~~~q~rvL~~Gi~gAlvlR~i-~i~~g~~L---i~~f~---------wi~~ifG~fLi~~a~k 143 (302)
T TIGR03718 77 VDNLFVFLLIFSYFAVPREYQHRVLFWGILGALVLRAI-FIALGAAL---IEQFH---------WVLYIFGAFLLYTGIK 143 (302)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HHHhH---------HHHHHHHHHHHHHHHH
Confidence 7999988888875 33456688899888876544 44555542 12222 2345555555555555
Q ss_pred Hhhh
Q 019749 226 TLLD 229 (336)
Q Consensus 226 tL~~ 229 (336)
++++
T Consensus 144 ~~~~ 147 (302)
T TIGR03718 144 MLFE 147 (302)
T ss_pred HHhh
Confidence 5553
No 22
>PRK10995 inner membrane protein; Provisional
Probab=82.48 E-value=2.3 Score=39.64 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=18.8
Q ss_pred chHHHHHHHHHHHHHHHHhhhh
Q 019749 209 PIDDIAAVCLLVYFGVSTLLDA 230 (336)
Q Consensus 209 ~v~~i~AavLFl~FGl~tL~~a 230 (336)
+..+++++++.+.+|+.|++..
T Consensus 74 ~a~rIaGGilL~~igi~ml~~~ 95 (221)
T PRK10995 74 PGLRIAGGLIVAFIGFRMLFPQ 95 (221)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 3469999999999999999864
No 23
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=79.55 E-value=15 Score=33.35 Aligned_cols=136 Identities=19% Similarity=0.255 Sum_probs=76.0
Q ss_pred CchHHHHHHHHHhccC----CcEeehhHHHHHHHHHHHHHHHcccccccccccCccccCCCcchHHHHHHHHHHHHHHHH
Q 019749 151 GDKTFFIAALLAARNS----AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVST 226 (336)
Q Consensus 151 GDKTQL~a~lLAaR~~----~~~VflGa~lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FGl~t 226 (336)
+|+-.++++ .+.+.+ ++..+.|...|+++..+........+ + +| ..+++++++.++.|..+
T Consensus 14 ~DN~~vi~~-~t~~lp~~~r~~~~~~G~~~A~vlr~if~~~G~~ll----~-~~---------~~~iaGGllLl~ia~~m 78 (176)
T TIGR03717 14 GDNAVVIAL-AARNLPAHQRKKAIFWGTAGAIVLRILLTAVAVYLL----A-IP---------FLKLIGGLLLLWIGWKL 78 (176)
T ss_pred HHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-hH---------HHHHHHHHHHHHHHHHH
Confidence 677777776 233333 34588899999988877766655433 2 22 35888888888889888
Q ss_pred hhhhhcCCCCCcchHHHHHHHhhhhccCCCccchhhHHHHHHHHHHHHHHHh--CChhHHHHHHHhhccCCceeehHHHH
Q 019749 227 LLDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIAAASTIISTFTLVFVAEW--GDKSFFSTIALAAASSPLGVIGGALA 304 (336)
Q Consensus 227 L~~a~~~~~~~~eeE~~eae~~v~~~~~~~~g~~~~~~~f~~aF~lvFLAE~--GDKTQLaTiaLAA~~~p~~V~~Ga~l 304 (336)
+++ +. ++++.++ . . ...++.+.+.+-++-. -=-+=+|.++.+ +.+.+.+++|..+
T Consensus 79 l~~----~~---~~~~~~~-----~---~-------~~~~~~~v~~I~~~D~~fS~DsV~a~~~~~-~~~~~li~~g~~i 135 (176)
T TIGR03717 79 LLE----EE---EEQGGDV-----K---G-------STTLWAAIKTIVIADAVMSLDNVLAVAGAA-HGHLGLLIFGLLL 135 (176)
T ss_pred Hhc----cc---ccccccc-----c---c-------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHH
Confidence 875 11 1111100 0 0 0123444333322211 112334444443 3467777888877
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 019749 305 GHVVATLLAVLGGSLLGTFL 324 (336)
Q Consensus 305 gl~l~t~laVl~G~~l~~~i 324 (336)
+..+--..+-+..+++.++-
T Consensus 136 ~i~~m~~~s~~~~~~~~~~p 155 (176)
T TIGR03717 136 SIPIIVWGSTLILKLMDRFP 155 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77666666666666665543
No 24
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=76.80 E-value=44 Score=32.42 Aligned_cols=164 Identities=18% Similarity=0.226 Sum_probs=84.9
Q ss_pred HHHHHHHHhhc---CchHHHHHHHHH---hccCCcEeehhHHHHHHHHHHHHHHHcccccccccccCccccCCCcchHHH
Q 019749 140 SAFLLIFFSEL---GDKTFFIAALLA---ARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDI 213 (336)
Q Consensus 140 ~aF~lIFlAEl---GDKTQL~a~lLA---aR~~~~~VflGa~lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i 213 (336)
.++...++-|. +|+=.+++++-. -+++++..+.|..+|++.=.++ ...|.|+ -+ ++. |+ -+
T Consensus 18 ~~l~tl~~lE~vL~iDN~iviai~~~~Lp~~qr~ral~~Gl~~A~v~R~~l-l~~~s~L---l~-l~~-------~l-~~ 84 (254)
T COG0861 18 VALLTLILLEIVLGIDNAIVIAILASKLPPKQRKKALFIGLAGALVLRIIL-LASISWL---LT-LTQ-------PL-LY 84 (254)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---HH-hhH-------HH-HH
Confidence 56666667775 899888776532 2334456888998888766554 4444442 11 111 11 22
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHhhhhccCCC---ccchhhHHHHHHHHHHHHHHH--hCChhHHHHHH
Q 019749 214 AAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNG---AGIIAAASTIISTFTLVFVAE--WGDKSFFSTIA 288 (336)
Q Consensus 214 ~AavLFl~FGl~tL~~a~~~~~~~~eeE~~eae~~v~~~~~~~---~g~~~~~~~f~~aF~lvFLAE--~GDKTQLaTia 288 (336)
+.+..++.-++.++++.. +++.++..+..++.+++. .+......+|+.+...+-++- +.=-|-+|.++
T Consensus 85 ~fg~~L~~~~~~ll~~~~-------~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~f~~ai~~I~i~D~vFSlDSV~Aa~g 157 (254)
T COG0861 85 IFGLYLLWRDIKLLLGGL-------FLLFKATKELHERLEGEEFFVNGKLKKATPFWGAIIQIELADLVFSLDSVIAAVG 157 (254)
T ss_pred HHHHHHHHHHHHHHhcch-------hHHHHHHHHHhhhhccccccccccccccCcHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 234455666666666411 111111000000011110 000001234566655554443 23356777777
Q ss_pred HhhccCCceeehHHHHHHHHHHHHHHHHHHHhhhccc
Q 019749 289 LAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLS 325 (336)
Q Consensus 289 LAA~~~p~~V~~Ga~lgl~l~t~laVl~G~~l~~~is 325 (336)
++ .+|+-+++|.+.+..+-=..+=...+++-++-.
T Consensus 158 ~~--~~~~im~~a~i~aI~~m~~aa~~l~~ll~r~p~ 192 (254)
T COG0861 158 MA--GHPFVMVTAVIFAILVMRFAAFLLARLLERHPT 192 (254)
T ss_pred Hh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHchH
Confidence 77 678888888888877666666666666655433
No 25
>PRK09304 arginine exporter protein; Provisional
Probab=76.21 E-value=24 Score=32.12 Aligned_cols=68 Identities=10% Similarity=0.084 Sum_probs=41.6
Q ss_pred HHHHHHHHhccCCcE-eehhHHHHHHHHHHHHHHHcccccccccccCccccCCCcchHHHHHHHHHHHHHHHHhhhh
Q 019749 155 FFIAALLAARNSAAT-VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA 230 (336)
Q Consensus 155 QL~a~lLAaR~~~~~-VflGa~lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FGl~tL~~a 230 (336)
.+..+.-+.++++.. ...|...+..+...++++.-.. +-...|.-. .+.++++++-.+++|..+++..
T Consensus 23 ~~~v~~~~~~~~~~~~~~~Gi~~g~~~~~~la~~Gl~~---Ll~~~p~~~-----~~l~~~Ga~YLlyLg~~~~rs~ 91 (207)
T PRK09304 23 NAFVMNQGIRRQYHLMIALLCALSDLVLICAGIFGGSA---LLMQSPWLL-----ALVTWGGVAFLLWYGFGAFKTA 91 (207)
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 334444566654433 6778888877776665544332 122334332 3578888877788999999863
No 26
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=76.18 E-value=10 Score=34.17 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=28.3
Q ss_pred ehHHHHHHHHHHHHHHHHHHHhhhcccHHHHhhh
Q 019749 299 IGGALAGHVVATLLAVLGGSLLGTFLSEKVYSNF 332 (336)
Q Consensus 299 ~~Ga~lgl~l~t~laVl~G~~l~~~is~r~i~~~ 332 (336)
.+...+.+...+.++.+.|+++.+++|+++++++
T Consensus 195 ~~~~~~~~~~~~~~G~~lG~~~~~~i~~~~~~~~ 228 (240)
T PF01925_consen 195 MLLLSLILLPGAFLGAFLGAKLARKIPQKVFRRI 228 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4444555788899999999999999999998875
No 27
>PRK10621 hypothetical protein; Provisional
Probab=75.17 E-value=43 Score=31.56 Aligned_cols=50 Identities=18% Similarity=0.081 Sum_probs=34.3
Q ss_pred eehhHHHHHHHHHHHHHHHcccccccccccCccccCCCcchHHHHHHHHHHHHHHHHhhh
Q 019749 170 VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 229 (336)
Q Consensus 170 VflGa~lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FGl~tL~~ 229 (336)
|=.-...-+.+..++.+.+|.+ +..++|+++ .+++-+++.++.++++++.
T Consensus 75 v~~~~~~~l~~~~l~Ga~~G~~---l~~~l~~~~-------l~~~~~~~ll~~~~~~l~~ 124 (266)
T PRK10621 75 VNLADQKLNIAMTFVGSMSGAL---LVQYVQADI-------LRQILPILVIGIGLYFLLM 124 (266)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH---HHHhCCHHH-------HHHHHHHHHHHHHHHHHHC
Confidence 5556666677778888889986 456778765 3554455667777777754
No 28
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=72.69 E-value=8.6 Score=35.59 Aligned_cols=52 Identities=15% Similarity=0.202 Sum_probs=32.6
Q ss_pred EeehhHHHHHHHHHHHHHHHcccccccccccCccccCCCcchHHHHHHHHHHHHHHHHhhh
Q 019749 169 TVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 229 (336)
Q Consensus 169 ~VflGa~lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FGl~tL~~ 229 (336)
..+-.+..+++++- +..++|+++ -+.+-- +++-.+++++++.+..|+.|+..
T Consensus 42 ia~~~~l~a~~ill-~f~~~G~~i---L~~fgI-----sl~afrIaGGiiL~~ia~~ml~~ 93 (201)
T TIGR00427 42 IAKKANISSFIILL-IFLVFGDTI---LKLFGI-----SIDAFRIAGGILLFTIAMDMLSG 93 (201)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHH---HHHhCC-----CHHHHHHHHHHHHHHHHHHHhCC
Confidence 34445555555554 555667652 122211 23457899999999999999965
No 29
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=72.60 E-value=18 Score=35.48 Aligned_cols=54 Identities=13% Similarity=0.027 Sum_probs=32.4
Q ss_pred HHHHHHHHhCChhHHHHHHHhhccCCceeehHHHHHHHHHHHHHHHHHHHhhhccc--HHHHh
Q 019749 270 FTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLS--EKVYS 330 (336)
Q Consensus 270 F~lvFLAE~GDKTQLaTiaLAA~~~p~~V~~Ga~lgl~l~t~laVl~G~~l~~~is--~r~i~ 330 (336)
++++|..-+|+-..-....++ .-+|..+.+....+++++..+...++.+ .++++
T Consensus 197 ~VLL~a~~lg~~~~Gi~~vla-------fslGtaltm~~vgll~~~~~r~~~~~~~~~~~~~~ 252 (279)
T PRK10019 197 TVLLICIQLKALTLGATLVLS-------FSIGLALTLVTVGVGAAISVQQAAKRWSGFNTLAR 252 (279)
T ss_pred HHHHHHHHhchHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 445555555654443333322 3468888888888888777776666663 44444
No 30
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=69.44 E-value=81 Score=28.92 Aligned_cols=69 Identities=12% Similarity=0.125 Sum_probs=45.8
Q ss_pred hHHHHHHHHHhccCCc---EeehhHHHHHHHHHHHHHHH-cccccccccccCccccCCCcchHHHHHHHHHHHHHHHHhh
Q 019749 153 KTFFIAALLAARNSAA---TVFAGTFGALAAMTVISVIL-GRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLL 228 (336)
Q Consensus 153 KTQL~a~lLAaR~~~~---~VflGa~lAL~l~t~LaVll-G~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FGl~tL~ 228 (336)
=..+.++.-+++++++ .+-+|..++.++...++++. +..++ ..|.-. .+.++++++-.+++|+.+++
T Consensus 22 P~~~~v~~~~~~~G~~~g~~~~~G~~~G~~v~~~l~~~Gl~all~----~~~~~f-----~~lk~~GaaYL~ylg~~~~r 92 (208)
T COG1280 22 PDNLLVLARSLSRGRRAGLATALGIALGDLVHMLLAALGLAALLA----TSPALF-----TVLKLAGAAYLLYLGWKALR 92 (208)
T ss_pred ccHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHH-----HHHHHHHHHHHHHHHHHHHh
Confidence 3445566677777654 27788888888777766653 33321 223222 25789999888999999998
Q ss_pred hh
Q 019749 229 DA 230 (336)
Q Consensus 229 ~a 230 (336)
..
T Consensus 93 a~ 94 (208)
T COG1280 93 AG 94 (208)
T ss_pred cc
Confidence 74
No 31
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=68.95 E-value=80 Score=28.39 Aligned_cols=71 Identities=13% Similarity=0.064 Sum_probs=47.1
Q ss_pred CchHHHHHHHHHhccCCc--E-eehhHHHHHHHHHHHHHHHcccccccccccCccccCCCcchHHHHHHHHHHHHHHHHh
Q 019749 151 GDKTFFIAALLAARNSAA--T-VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTL 227 (336)
Q Consensus 151 GDKTQL~a~lLAaR~~~~--~-VflGa~lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FGl~tL 227 (336)
..=..+..+.-+++++++ + ..+|...|..+...++++.-.. +-...|... .+.++++++-.+++|.+++
T Consensus 20 PGP~~~~v~~~~~~~G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~---l~~~~p~~~-----~~lk~~Ga~YL~~lg~~~~ 91 (205)
T PRK10520 20 PGSGAINTMSTSISHGYRGAVASIAGLQTGLAIHIVLVGVGLGA---LFSQSLLAF-----EVLKWAGAAYLIWLGIQQW 91 (205)
T ss_pred CchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 334455666667777644 3 7779999998887776554433 122334332 3578998887888999999
Q ss_pred hh
Q 019749 228 LD 229 (336)
Q Consensus 228 ~~ 229 (336)
+.
T Consensus 92 ~s 93 (205)
T PRK10520 92 RA 93 (205)
T ss_pred hC
Confidence 86
No 32
>COG4280 Predicted membrane protein [Function unknown]
Probab=67.74 E-value=7.6 Score=37.07 Aligned_cols=54 Identities=19% Similarity=0.108 Sum_probs=45.1
Q ss_pred ChhHHHHHHHhhc--cCCceeehHHHHHHHHHHHHHHHHHHHhhhcccHHHHhhhcc
Q 019749 280 DKSFFSTIALAAA--SSPLGVIGGALAGHVVATLLAVLGGSLLGTFLSEKVYSNFNL 334 (336)
Q Consensus 280 DKTQLaTiaLAA~--~~p~~V~~Ga~lgl~l~t~laVl~G~~l~~~is~r~i~~~aG 334 (336)
.-+-.-+|+.+-. +++-.-++|+.+|+++.-.++..+|+.+ ..+|.+++++++|
T Consensus 16 ElvEa~aIa~avg~~~~wr~al~ga~lglalvl~l~lvlGk~L-~lvPln~lqiv~g 71 (236)
T COG4280 16 ELVEAGAIAAAVGNIYKWRLALIGAVLGLALVLILTLVLGKLL-YLVPLNYLQIVSG 71 (236)
T ss_pred HHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHccce-eeeechHHHHHHH
Confidence 3455667777765 5677889999999999999999999988 6799999999877
No 33
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=65.67 E-value=43 Score=31.63 Aligned_cols=68 Identities=18% Similarity=0.344 Sum_probs=43.3
Q ss_pred chHHHHHHHHHhccCC--cE-eehhHHHHHHHHHHHHHHHcccccccccccCccccCCCcchHHHHHHHHHHHHHHHHhh
Q 019749 152 DKTFFIAALLAARNSA--AT-VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLL 228 (336)
Q Consensus 152 DKTQL~a~lLAaR~~~--~~-VflGa~lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FGl~tL~ 228 (336)
|--=++.+..|.+-.+ .+ +++|=.++....-..|.++.- +.+++|+.+ +.... +.+=++.|+|.++
T Consensus 18 D~lIiL~l~Far~~~~k~~~~I~~GQyLGs~~lilaSL~~a~----v~~fvp~e~------I~glL-GLIPi~LGik~l~ 86 (205)
T COG4300 18 DLLIILLLFFARRKSRKDILHIYLGQYLGSVILILASLLFAF----VLNFVPEEW------ILGLL-GLIPIYLGIKVLI 86 (205)
T ss_pred HHHHHHHHHHHHhcccCcEEEEeHHHHHhHHHHHHHHHHHHH----HHhhCcHHH------HHHHH-hHHHHHHhhHHhh
Confidence 4445555666655422 23 999998887776666655442 456789876 22344 3456789999888
Q ss_pred hh
Q 019749 229 DA 230 (336)
Q Consensus 229 ~a 230 (336)
.+
T Consensus 87 ~~ 88 (205)
T COG4300 87 LG 88 (205)
T ss_pred cc
Confidence 63
No 34
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=64.20 E-value=35 Score=29.92 Aligned_cols=20 Identities=25% Similarity=0.152 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHhhh
Q 019749 210 IDDIAAVCLLVYFGVSTLLD 229 (336)
Q Consensus 210 v~~i~AavLFl~FGl~tL~~ 229 (336)
+...+.+++|++||++++++
T Consensus 171 ~i~~~~g~~li~~av~l~~~ 190 (191)
T PF01810_consen 171 WINRISGLLLIGFAVYLLYS 190 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 35777788999999999986
No 35
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=63.74 E-value=33 Score=31.32 Aligned_cols=76 Identities=24% Similarity=0.361 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhhcCchHH-----HHHHHHHhccCCcEeehhHHHHHHHHHHHHHHHcccccccccccCccccCCCcch
Q 019749 136 RGFASAFLLIFFSELGDKTF-----FIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPI 210 (336)
Q Consensus 136 ~~fl~aF~lIFlAElGDKTQ-----L~a~lLAaR~~~~~VflGa~lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v 210 (336)
..++.+... -|+=|=.| ++++.++ .+.+.++.|...+...|-..+-.+.+++ ++.| .
T Consensus 103 ~~~~~~v~~---I~~~DlvfSlDSV~a~~~it--~~~~iv~~g~i~si~~m~~~~~~~~~~l----~~~p---------~ 164 (183)
T PF03741_consen 103 SSLWLAVIQ---IELADLVFSLDSVLAAVGIT--DDFFIVITGNIISILLMRFLSFLLAKLL----ERFP---------Y 164 (183)
T ss_pred HHHHHHHHH---HHHHHHHHHHhHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---------H
Confidence 344444444 45556554 3444444 4445699999999999999999998863 3444 4
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 019749 211 DDIAAVCLLVYFGVSTLLD 229 (336)
Q Consensus 211 ~~i~AavLFl~FGl~tL~~ 229 (336)
.+++++++..+.|+.++.+
T Consensus 165 l~~~~~~~L~~ig~~li~~ 183 (183)
T PF03741_consen 165 LKYLAAAILGFIGVKLILE 183 (183)
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 6888888888899988763
No 36
>PRK11111 hypothetical protein; Provisional
Probab=60.15 E-value=7.7 Score=36.38 Aligned_cols=52 Identities=19% Similarity=0.230 Sum_probs=33.5
Q ss_pred EeehhHHHHHHHHHHHHHHHcccccccccccCccccCCCcchHHHHHHHHHHHHHHHHhhh
Q 019749 169 TVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 229 (336)
Q Consensus 169 ~VflGa~lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FGl~tL~~ 229 (336)
..+-.+..+.+++. +..++|+++ -+++-- +++-.+++++++.+.+|+.|+..
T Consensus 45 ia~~a~l~a~~ill-~f~~~G~~i---L~~fGI-----sl~afrIaGGiiL~~ial~Ml~g 96 (214)
T PRK11111 45 TNLTANLSVAIILL-ISLFLGDFI---LNLFGI-----SIDSFRIAGGILVVTIAMSMISG 96 (214)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHH---HHHhCC-----CHHHHHHHHHHHHHHHHHHHhCC
Confidence 34455555555555 567778762 222211 23447899999999999999964
No 37
>PRK10958 leucine export protein LeuE; Provisional
Probab=58.92 E-value=1.2e+02 Score=27.81 Aligned_cols=67 Identities=21% Similarity=0.299 Sum_probs=43.1
Q ss_pred HHHHHHHhccCCc--E-eehhHHHHHHHHHHHHHH-HcccccccccccCccccCCCcchHHHHHHHHHHHHHHHHhhhhh
Q 019749 156 FIAALLAARNSAA--T-VFAGTFGALAAMTVISVI-LGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 231 (336)
Q Consensus 156 L~a~lLAaR~~~~--~-VflGa~lAL~l~t~LaVl-lG~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FGl~tL~~a~ 231 (336)
+..+.-+.+++++ . ..+|..+|..+...++++ +|..+ ...|.-. .+.++++++..+++|.+.++++.
T Consensus 29 ~~v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~G~~~l~----~~~p~~~-----~~l~~~G~~yL~~la~~~~~~~~ 99 (212)
T PRK10958 29 LYVLSTAARRGVKAGYRAACGVFIGDAVLMFLAAAGVASLL----KATPLLF-----NVVKYLGAAYLLYLGVKMLRAAL 99 (212)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHH-----HHHHHHHHHHHHHHHHHHHHhhc
Confidence 4445556666643 2 777888888887766664 33332 2233332 35789988878889999998753
No 38
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=57.70 E-value=25 Score=32.96 Aligned_cols=55 Identities=13% Similarity=0.410 Sum_probs=38.8
Q ss_pred ccCCcEeehhHHHHHHHHHHHHHHHcccccccccccCccccCCCcchHHHHHHHHHHHHHHHHhhh
Q 019749 164 RNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 229 (336)
Q Consensus 164 R~~~~~VflGa~lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FGl~tL~~ 229 (336)
+++++.|.+|-.+|..+.-++|+..+.. ...+|+.| +..+++ .+=+++|+|-+++
T Consensus 21 ~~~~~~IviGqylGf~~Lv~~Sl~~a~g----l~~iP~~w------IlGlLG-liPI~lGi~~l~~ 75 (193)
T TIGR00779 21 RKEYKDIYIGQYLGSIILILVSLLLAFG----VNLIPEKW------VLGLLG-LIPIYLGIKVAIK 75 (193)
T ss_pred CCCeeEEEEeHHHHHHHHHHHHHHHHHH----HHhCCHHH------HHhHHh-HHHHHHHHHHHhc
Confidence 4566679999999998888888775542 24678765 224453 3458999998886
No 39
>PRK10229 threonine efflux system; Provisional
Probab=56.73 E-value=42 Score=30.18 Aligned_cols=74 Identities=16% Similarity=0.159 Sum_probs=48.9
Q ss_pred hhcCchHHHHHHHHHhccCCcE---eehhHHHHHHHHHHHHHHHcccccccccccCccccCCCcchHHHHHHHHHHHHHH
Q 019749 148 SELGDKTFFIAALLAARNSAAT---VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGV 224 (336)
Q Consensus 148 AElGDKTQL~a~lLAaR~~~~~---VflGa~lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FGl 224 (336)
.-.|. ..+.++--+.+++++. ..+|...|.++..+++++.-.. +-...|.-. .+.++++++..+++|.
T Consensus 17 ~sPGP-~~~~vi~~~~~~G~~~~~~~~~G~~~g~~i~~~l~~~Gl~~---ll~~~p~~~-----~~l~~~Ga~yLlylg~ 87 (206)
T PRK10229 17 MSPGP-DFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGVALLGLHL---ILEKMAWLH-----TIIMVGGGLYLCWMGY 87 (206)
T ss_pred cCCCc-hhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHH-----HHHHHHHHHHHHHHHH
Confidence 33455 6777777888887553 6678888888877766554433 222334322 2578888877788999
Q ss_pred HHhhhh
Q 019749 225 STLLDA 230 (336)
Q Consensus 225 ~tL~~a 230 (336)
.++++.
T Consensus 88 ~~~~~~ 93 (206)
T PRK10229 88 QMLRGA 93 (206)
T ss_pred HHHHhc
Confidence 998864
No 40
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=52.48 E-value=1.8e+02 Score=26.22 Aligned_cols=71 Identities=14% Similarity=0.105 Sum_probs=46.9
Q ss_pred CchHHHHHHHHHhccCCc--E-eehhHHHHHHHHHHHHHHHcccccccccccCccccCCCcchHHHHHHHHHHHHHHHHh
Q 019749 151 GDKTFFIAALLAARNSAA--T-VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTL 227 (336)
Q Consensus 151 GDKTQL~a~lLAaR~~~~--~-VflGa~lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FGl~tL 227 (336)
..=+.+..+.-+++++++ + ..+|...|..+...+++..... +-...|.-. .+.++++++-.+++|.+++
T Consensus 20 PGP~~~~v~~~~~~~G~r~a~~~~~G~~~g~~~~~~~~~~g~~~---l~~~~p~~~-----~vlk~~Ga~YLlyLg~~~~ 91 (195)
T PRK10323 20 PGPNNILALSSATSHGFRQSTRVLAGMSLGFLIVMLLCAGISFS---LAVIDPAAV-----HLLSWAGAAYIVWLAWKIA 91 (195)
T ss_pred CChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 344556666677777654 3 8889999999987666644422 222334332 3578998876788999998
Q ss_pred hh
Q 019749 228 LD 229 (336)
Q Consensus 228 ~~ 229 (336)
+.
T Consensus 92 ~s 93 (195)
T PRK10323 92 TS 93 (195)
T ss_pred hc
Confidence 75
No 41
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=52.13 E-value=24 Score=33.09 Aligned_cols=130 Identities=18% Similarity=0.227 Sum_probs=63.7
Q ss_pred EeehhHHHHHHHHHHHHHHHccc-ccccccccCccccCCCcchHHHHHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHH
Q 019749 169 TVFAGTFGALAAMTVISVILGRT-FHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAEL 247 (336)
Q Consensus 169 ~VflGa~lAL~l~t~LaVllG~~-l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FGl~tL~~a~~~~~~~~eeE~~eae~ 247 (336)
+++-....|+.++-+ ..++|+. +.+++ ++.. -.+++++++.+..|+.|++...+.+..+. ||.+|++.
T Consensus 42 v~~ra~i~a~~ill~-f~~~G~~il~~fg--Isi~-------a~rIAGGilLf~ia~~ml~~~~~~~~~~~-e~~~~~~i 110 (203)
T COG2095 42 VALRASIIALLILLV-FLLLGEGILRFFG--ISID-------AFRIAGGILLFLIALRMLFGPTSRPKKKR-EEGQEDSI 110 (203)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhC--Cchh-------HHHHhhhHHHHHHHHHHhcCCcCcCCCCc-ccCccCCe
Confidence 344555555555544 4445554 22121 2322 36899999999999999997443222111 11111011
Q ss_pred hhhhccCCCccchhhHHHHHHHHHHHHHHHhCChhHHHHHHHhhccC-CceeehHHHHHHHHHHHHHHHHHHHhhhcccH
Q 019749 248 AVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIALAAASS-PLGVIGGALAGHVVATLLAVLGGSLLGTFLSE 326 (336)
Q Consensus 248 ~v~~~~~~~~g~~~~~~~f~~aF~lvFLAE~GDKTQLaTiaLAA~~~-p~~V~~Ga~lgl~l~t~laVl~G~~l~~~is~ 326 (336)
.+ . ++..= .+ -|+-+==+++.++.+++ ...+.+++++...+.+.+.-....++.|++-.
T Consensus 111 ai--v------------PLA~P----li--aGPg~Ist~i~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~s~~i~r~lG~ 170 (203)
T COG2095 111 AI--V------------PLAIP----LI--AGPGTIATVIVLSSQYGNSKLAVVLAILLASLLTYLILLSSSRIMRLLGK 170 (203)
T ss_pred ee--e------------cccCc----cc--cCcHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 0 00000 00 15555555666666654 23444555555555555566666666666554
Q ss_pred HHH
Q 019749 327 KVY 329 (336)
Q Consensus 327 r~i 329 (336)
+-+
T Consensus 171 ~G~ 173 (203)
T COG2095 171 TGL 173 (203)
T ss_pred HHH
Confidence 433
No 42
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=49.15 E-value=42 Score=29.93 Aligned_cols=82 Identities=13% Similarity=0.059 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHhhhhccCCCccchhh--HHHHHHHHHHHHHHHhCChhHHHHHHHh
Q 019749 213 IAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIAA--ASTIISTFTLVFVAEWGDKSFFSTIALA 290 (336)
Q Consensus 213 i~AavLFl~FGl~tL~~a~~~~~~~~eeE~~eae~~v~~~~~~~~g~~~~--~~~f~~aF~lvFLAE~GDKTQLaTiaLA 290 (336)
.+++.+-+..|.+..+-+.+.+...||.|+.|-+ +-. ..-|..+| +.++..+.... ++.++++
T Consensus 42 ~ls~~l~~mig~yl~~~~rr~~~rPED~~daEI~----dgA-Ge~GfFsP~SwWPl~la~~~a----------l~~lGla 106 (137)
T PF12270_consen 42 VLSGGLALMIGFYLRFTARRIGPRPEDREDAEIA----DGA-GELGFFSPHSWWPLVLAAAAA----------LVFLGLA 106 (137)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCccccccccc----cCC-CCcCcCCCccHhHHHHHHHHH----------HHHHHHH
Confidence 3444556666666666666655444444443222 111 11233322 23444433221 2223344
Q ss_pred hccCCceeehHHHHHHHHHHH
Q 019749 291 AASSPLGVIGGALAGHVVATL 311 (336)
Q Consensus 291 A~~~p~~V~~Ga~lgl~l~t~ 311 (336)
..+|.+.+|..+..+.+.+
T Consensus 107 --~g~Wl~~iG~~~~i~~~~G 125 (137)
T PF12270_consen 107 --FGWWLILIGAVLLIVAVVG 125 (137)
T ss_pred --HHHHHHHHHHHHHHHHHHH
Confidence 3348888888776554443
No 43
>PRK10599 calcium/sodium:proton antiporter; Provisional
Probab=44.49 E-value=2e+02 Score=29.43 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=20.9
Q ss_pred CceeehHHHHHHHHHHHHHHHH-HHHhhh
Q 019749 295 PLGVIGGALAGHVVATLLAVLG-GSLLGT 322 (336)
Q Consensus 295 p~~V~~Ga~lgl~l~t~laVl~-G~~l~~ 322 (336)
...+.+|+.++.+.-+.+++.. |-++.+
T Consensus 287 slnialGSsLq~illtvP~lvlig~~~g~ 315 (366)
T PRK10599 287 AMNLFFGSVLATISLTVPVVTLIAFLTGN 315 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4778999999999888888766 444443
No 44
>PRK10739 putative antibiotic transporter; Provisional
Probab=43.76 E-value=40 Score=31.26 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=31.5
Q ss_pred eehhHHHHHHHHHHHHHHHcccccccccccCccccCCCcchHHHHHHHHHHHHHHHHhhh
Q 019749 170 VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 229 (336)
Q Consensus 170 VflGa~lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FGl~tL~~ 229 (336)
.+-.+..+.+++- +..++|+.+ -+.+-- +++-.+++++++.+.+|+.|+++
T Consensus 40 a~~a~~~a~~ill-~f~~~G~~i---L~~fGI-----sl~afrIAGGilL~~ial~ml~~ 90 (197)
T PRK10739 40 MIRELLIALLVML-VFLFAGEKI---LAFLNL-----RTETVSISGGIILFLIAIKMIFP 90 (197)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHH---HHHhCC-----CHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444445554444 566667652 222211 23447999999999999999975
No 45
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=40.61 E-value=2.6e+02 Score=28.86 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=12.3
Q ss_pred eehhHHHHHHHHHHHHHHHccc
Q 019749 170 VFAGTFGALAAMTVISVILGRT 191 (336)
Q Consensus 170 VflGa~lAL~l~t~LaVllG~~ 191 (336)
|+.|..+|+++-.=++.++|++
T Consensus 142 v~~G~tlA~v~GvPLGt~ig~~ 163 (394)
T COG2814 142 VFTGLTLATVLGVPLGTFLGQL 163 (394)
T ss_pred HHHHHHHHHHHhccHHHHHHHH
Confidence 5566666655555555555544
No 46
>KOG1397 consensus Ca2+/H+ antiporter VCX1 and related proteins [Inorganic ion transport and metabolism]
Probab=40.26 E-value=79 Score=33.07 Aligned_cols=20 Identities=25% Similarity=0.389 Sum_probs=13.8
Q ss_pred cCchHHHHHHHHHhccCCcE
Q 019749 150 LGDKTFFIAALLAARNSAAT 169 (336)
Q Consensus 150 lGDKTQL~a~lLAaR~~~~~ 169 (336)
.|.-|-++...+|-|.++..
T Consensus 136 fGnaiElii~ilALk~g~~r 155 (441)
T KOG1397|consen 136 FGNAIELIIYILALKNGKVR 155 (441)
T ss_pred hccHHHHHHHHHHhhcCceE
Confidence 46777777777777776644
No 47
>COG1971 Predicted membrane protein [Function unknown]
Probab=36.91 E-value=44 Score=31.34 Aligned_cols=43 Identities=23% Similarity=0.392 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHcccccccccccCccccCCCcchHHHHHHHHHHHHHHHHhhhhh
Q 019749 178 LAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 231 (336)
Q Consensus 178 L~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FGl~tL~~a~ 231 (336)
.++++.++..+|+. +..++..+ ..++++++++.||++.|++.+
T Consensus 146 T~il~~~G~~IG~~---~g~~~g~~--------ae~lgGiiLI~~G~~iL~~~~ 188 (190)
T COG1971 146 TLILSALGAIIGRK---LGKFLGKY--------AEILGGIILIGIGVKILLEHL 188 (190)
T ss_pred HHHHHHHHHHHHHH---HHHHHhhH--------HHHHHHHHHHHHHHHHHHHhc
Confidence 44566666666653 45566544 589999999999999999854
No 48
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=32.03 E-value=2.7e+02 Score=30.09 Aligned_cols=95 Identities=18% Similarity=0.295 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHhhhhccCCCccchhhHHHHHHHHHHHHHHHhCChhHHHHHHH
Q 019749 210 IDDIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIAL 289 (336)
Q Consensus 210 v~~i~AavLFl~FGl~tL~~a~~~~~~~~eeE~~eae~~v~~~~~~~~g~~~~~~~f~~aF~lvFLAE~GDKTQLaTiaL 289 (336)
+.+.++++..++||+.++.++...- -.+.-+.- ..++.. +++..++..++++-+----+-|-+.|+++
T Consensus 7 ~l~l~g~v~l~L~g~~~m~~Gv~~~----~G~~lr~~--L~~~t~------np~~gvl~Gi~~T~llQSStatt~lt~gf 74 (533)
T COG1283 7 LLNLLGAVALLLFGIKMVGDGVQRA----AGDRLRKI--LARFTS------NPILGVLAGIVATALLQSSTATTVLTIGF 74 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHH--HHHhcC------CcHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 4688889999999999999876431 11111111 112222 24566788888888888888899999999
Q ss_pred hhcc-----CCceeehHHHHHHHHHHHHHHHH
Q 019749 290 AAAS-----SPLGVIGGALAGHVVATLLAVLG 316 (336)
Q Consensus 290 AA~~-----~p~~V~~Ga~lgl~l~t~laVl~ 316 (336)
.++. ...+|++|+=+|-.+.+-+..+.
T Consensus 75 V~aGl~sl~~Ai~vilGANIGTt~Ta~iva~~ 106 (533)
T COG1283 75 VAAGLLSLKQAIGVILGANIGTTVTAWIVALD 106 (533)
T ss_pred HhccccchhhhhhheeccchhHHHHHHHHHHh
Confidence 8873 24789999988887776555443
No 49
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.03 E-value=61 Score=26.05 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcccHHHHh
Q 019749 304 AGHVVATLLAVLGGSLLGTFLSEKVYS 330 (336)
Q Consensus 304 lgl~l~t~laVl~G~~l~~~is~r~i~ 330 (336)
+..++|-+.++++|-+++++.-++.++
T Consensus 8 l~ivl~ll~G~~~G~fiark~~~k~lk 34 (71)
T COG3763 8 LLIVLALLAGLIGGFFIARKQMKKQLK 34 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788888899999999999987766654
No 50
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=28.63 E-value=7.4e+02 Score=26.41 Aligned_cols=64 Identities=19% Similarity=0.153 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHh-CChhHHHHHHHhhccCCceeehH----HHHHHHHHHHHHHHHHHHhhhcccH
Q 019749 263 ASTIISTFTLVFVAEW-GDKSFFSTIALAAASSPLGVIGG----ALAGHVVATLLAVLGGSLLGTFLSE 326 (336)
Q Consensus 263 ~~~f~~aF~lvFLAE~-GDKTQLaTiaLAA~~~p~~V~~G----a~lgl~l~t~laVl~G~~l~~~is~ 326 (336)
+.-++.-|+..|.++- ++-.|..++.+-.-.+-..|+.+ ++.|.+.+.....+..-.+.+..+.
T Consensus 265 ~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r 333 (488)
T KOG2325|consen 265 LVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKR 333 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 3456677788888877 99999999998875443333333 3344444444444444444443333
No 51
>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter. This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.
Probab=27.66 E-value=5e+02 Score=25.83 Aligned_cols=102 Identities=12% Similarity=0.152 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHhhhhccCCCccchhhHHHHHHHHHHHHHHHhCChhHHHHHHHhh
Q 019749 212 DIAAVCLLVYFGVSTLLDAASTDGLKSEDEQKEAELAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIALAA 291 (336)
Q Consensus 212 ~i~AavLFl~FGl~tL~~a~~~~~~~~eeE~~eae~~v~~~~~~~~g~~~~~~~f~~aF~lvFLAE~GDKTQLaTiaLAA 291 (336)
+.+.+.-++++|+.++.++.+.= ++++.-.+- .....+ +++..++..++++.+------+=..+++|++
T Consensus 131 ~~l~G~gllf~gl~~m~~~~~pl--~~~~~~~~~---~~~l~~------~~~~~~l~G~~lT~ivQSSsA~i~i~~~la~ 199 (307)
T TIGR00704 131 RSGIGLGLIFLALELISQLVTPL--TQANGVQVI---FASLTG------SILLDLLIGAVLTIISHSSSAAVLITATLTA 199 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hcChhHHHH---HHHhcc------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445567788888887754321 111111110 001111 1233344444445544322222233344555
Q ss_pred ccC-----CceeehHHHHHHHHHHHHHHHHHHHhhhcc
Q 019749 292 ASS-----PLGVIGGALAGHVVATLLAVLGGSLLGTFL 324 (336)
Q Consensus 292 ~~~-----p~~V~~Ga~lgl~l~t~laVl~G~~l~~~i 324 (336)
..- ..++.+|+-+|-.+...++-+.+..-+||+
T Consensus 200 ~G~i~~~~a~~lvlGaNiGT~~ta~las~g~~~~arr~ 237 (307)
T TIGR00704 200 AGIIGFPVALCLVLGSNLGSGILAMLAASAANAAARRV 237 (307)
T ss_pred CCCCCHHHHHHHHHhcchhHHHHHHHHHccCchhHHHH
Confidence 421 356677777777777777776666555554
No 52
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=26.83 E-value=15 Score=23.20 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=16.9
Q ss_pred ccccCCCCCCCCCCCCccCC
Q 019749 11 LKAHSLPSSASYPKASKSCG 30 (336)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~ 30 (336)
+|.|+-+.|++||.-.|.|.
T Consensus 6 ~~~H~~~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 6 MRTHTGEKPYKCPYCGKSFS 25 (26)
T ss_dssp HHHHSSSSSEEESSSSEEES
T ss_pred hhhcCCCCCCCCCCCcCeeC
Confidence 46799999999999888764
No 53
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.44 E-value=3.5e+02 Score=23.89 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=14.2
Q ss_pred hhcCchHHHHHHHHHhc
Q 019749 148 SELGDKTFFIAALLAAR 164 (336)
Q Consensus 148 AElGDKTQL~a~lLAaR 164 (336)
|||.||-||.-++.=.|
T Consensus 33 a~W~DKdellDViyW~r 49 (129)
T KOG3415|consen 33 AEWPDKDELLDVIYWIR 49 (129)
T ss_pred ccCCCHHHHHHHHHHHH
Confidence 69999999998876555
No 54
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.01 E-value=3.7e+02 Score=29.53 Aligned_cols=126 Identities=21% Similarity=0.246 Sum_probs=68.7
Q ss_pred eehhHHHHHHHHHHHHHHHcccccccccccCccccCCCcchHHHHHHHHHHHHHHHHhhhhhc----CCCCCcchHHHHH
Q 019749 170 VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAS----TDGLKSEDEQKEA 245 (336)
Q Consensus 170 VflGa~lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FGl~tL~~a~~----~~~~~~eeE~~ea 245 (336)
|++|+-..++.|..+.+++.-. +-..|..-+ . .--++.++|+++|+..=|-+-+ ..| .+-+..
T Consensus 332 v~vGsGvQ~l~M~~vti~fA~l----GflSPs~RG--s---LmT~~~~l~v~~G~~agY~s~rlyk~~~g----~~wk~~ 398 (628)
T KOG1278|consen 332 VLVGSGVQLLGMILVTIFFACL----GFLSPSSRG--S---LMTAMVLLFVFMGFVAGYVSARLYKTFKG----REWKRN 398 (628)
T ss_pred EEeccChhhhHHHHHHHHHHHh----ccCCccccc--c---HHHHHHHHHHHHHHhhhhhhhhhHhhhcC----Ccchhh
Confidence 9999999999998888887753 334454432 1 1233455677778765554211 111 000000
Q ss_pred HHhhhhccCCCccchhhHHHHHHHHHHHHHHHhCChhHHHHHHHhhccCCceeehHHHHHHHHHHHHHHHHHHHhhhccc
Q 019749 246 ELAVSEFSGNGAGIIAAASTIISTFTLVFVAEWGDKSFFSTIALAAASSPLGVIGGALAGHVVATLLAVLGGSLLGTFLS 325 (336)
Q Consensus 246 e~~v~~~~~~~~g~~~~~~~f~~aF~lvFLAE~GDKTQLaTiaLAA~~~p~~V~~Ga~lgl~l~t~laVl~G~~l~~~is 325 (336)
.. .+...-|-..|...|++-|+- ||-+|- ..=|++-++--.+=.+..+.+=+++|.+++.|.+
T Consensus 399 --~~------lta~l~PGivf~~~f~lN~~l-W~~~SS--------gAvPF~T~~~ll~LwF~isVPLsf~G~y~g~kk~ 461 (628)
T KOG1278|consen 399 --AI------LTAFLFPGIVFAIFFVLNFFL-WGKHSS--------GAVPFSTMVALLFLWFGISVPLSFVGGYFGFKKP 461 (628)
T ss_pred --HH------hhhhhcchHHHHHHHHHHHHh-hcCCCC--------CcccHHHHHHHHHHHHHhhhhHHHhhHHhhccCC
Confidence 00 001111123566777777776 765431 1114444444444456778888889998887754
No 55
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=23.67 E-value=50 Score=24.82 Aligned_cols=35 Identities=17% Similarity=0.409 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHcccccccccccCccccCCCcchHHHHHHHHHHHHH
Q 019749 178 LAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFG 223 (336)
Q Consensus 178 L~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FG 223 (336)
-.+|+.++..+|+. +.++++.. .+++++++++++|
T Consensus 33 ~~~~~~~G~~~G~~---~~~~~~~~--------~~~igg~iLi~iG 67 (67)
T PF02659_consen 33 QFIMPLLGLLLGRR---LGRFIGSY--------AEWIGGIILIFIG 67 (67)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHH--------HHHHHHHHHHHHC
Confidence 46778888888886 34555432 6888888877765
No 56
>PF14045 YIEGIA: YIEGIA protein
Probab=21.97 E-value=2.4e+02 Score=28.18 Aligned_cols=45 Identities=11% Similarity=0.205 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcccccccccccCccccCCCcchHHHHHHHHHHHHHHHHhhhhhcCC
Q 019749 177 ALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTD 234 (336)
Q Consensus 177 AL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FGl~tL~~a~~~~ 234 (336)
-++..-.+|..+|..+ ++.++-+. +. ++-|+..++-=.+|-..+|
T Consensus 34 iHi~LG~IAa~LGava--iPAL~~ke----------yt-AvTFLaLAaqQFRdVR~mE 78 (285)
T PF14045_consen 34 IHISLGFIAAALGAVA--IPALLEKE----------YT-AVTFLALAAQQFRDVRNME 78 (285)
T ss_pred hHHHHHHHHHHhhhhh--hHHHhccc----------hH-HHHHHHHHHHHHHHHHHHH
Confidence 3556667788888763 56655443 33 5579999999888865543
No 57
>PRK11469 hypothetical protein; Provisional
Probab=21.48 E-value=1.2e+02 Score=27.82 Aligned_cols=45 Identities=22% Similarity=0.340 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHcccccccccccCccccCCCcchHHHHHHHHHHHHHHHHhhhhh
Q 019749 176 GALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 231 (336)
Q Consensus 176 lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~FGl~tL~~a~ 231 (336)
+-.++++..++.+|+. +++++..+ ..+++++++++.|++.|.+..
T Consensus 142 ~~s~~~~~~G~~lG~~---~g~~~g~~--------a~~lgG~iLI~iGi~il~~h~ 186 (188)
T PRK11469 142 CATLIMSTLGMMVGRF---IGSIIGKK--------AEILGGLVLIGIGVQILWTHF 186 (188)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHc
Confidence 3345566666667764 23333322 578999999999999998743
No 58
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=21.13 E-value=1.9e+02 Score=27.44 Aligned_cols=74 Identities=28% Similarity=0.335 Sum_probs=51.0
Q ss_pred HHHhhcCchHHH---HHHHHHhccCCcEeehhHHHHHHHHHHHHHHHcccccccccccCccccCCCcchHHHHHHHHHHH
Q 019749 145 IFFSELGDKTFF---IAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVY 221 (336)
Q Consensus 145 IFlAElGDKTQL---~a~lLAaR~~~~~VflGa~lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v~~i~AavLFl~ 221 (336)
+..-|+=|=.|= +.++.|...+...++.|...+...|-..+-.+.++. +..| ..+++++++..+
T Consensus 99 v~~I~~~DlvFSlDSV~A~~git~~~~ii~~g~~~sIl~lr~~s~~l~~li----~r~p---------~L~~~~~~iL~~ 165 (215)
T TIGR03716 99 VLKVELMDIAFSVDSILAAVALSGQFWVVFLGGIIGILIMRFAATIFVKLL----ERFP---------ELETAAFLLIGW 165 (215)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---------HHHHHHHHHHHH
Confidence 334455565552 122333334455699999999999999999888753 3333 468888888899
Q ss_pred HHHHHhhhhh
Q 019749 222 FGVSTLLDAA 231 (336)
Q Consensus 222 FGl~tL~~a~ 231 (336)
.|+.++.+++
T Consensus 166 ig~kLil~~~ 175 (215)
T TIGR03716 166 IGVKLLLETL 175 (215)
T ss_pred HHHHHHHHHH
Confidence 9999999854
No 59
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=20.72 E-value=2e+02 Score=27.92 Aligned_cols=78 Identities=23% Similarity=0.337 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhhcCchHH-----HHHHHHHhccCCcEeehhHHHHHHHHHHHHHHHcccccccccccCccccCCCcch
Q 019749 136 RGFASAFLLIFFSELGDKTF-----FIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPI 210 (336)
Q Consensus 136 ~~fl~aF~lIFlAElGDKTQ-----L~a~lLAaR~~~~~VflGa~lAL~l~t~LaVllG~~l~~i~~~LP~~~~~~~~~v 210 (336)
..|+.+...|-++ |=.| ++++.++ ...++++.|.+.|..+|-..+-.+.+++ ++.| .
T Consensus 131 ~~f~~ai~~I~i~---D~vFSlDSV~Aa~g~~--~~~~im~~a~i~aI~~m~~aa~~l~~ll----~r~p---------~ 192 (254)
T COG0861 131 TPFWGAIIQIELA---DLVFSLDSVIAAVGMA--GHPFVMVTAVIFAILVMRFAAFLLARLL----ERHP---------T 192 (254)
T ss_pred CcHHHHHHHHHHH---HHHHhhhHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHH----HHch---------H
Confidence 4566665555443 4433 4444444 4456699999999999999999988864 3444 3
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 019749 211 DDIAAVCLLVYFGVSTLLDAA 231 (336)
Q Consensus 211 ~~i~AavLFl~FGl~tL~~a~ 231 (336)
..+++.++.++.|+.++.+++
T Consensus 193 l~~~~~~iL~~IG~kli~~~~ 213 (254)
T COG0861 193 LKYLALVILLFIGVKLILEGL 213 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 578888888999999999753
No 60
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=20.64 E-value=3.1e+02 Score=27.08 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=22.9
Q ss_pred CCCCccchhHHHHHHHHHHHHhhcCchHHHHHHHHHhcc
Q 019749 127 FLGDLGDISRGFASAFLLIFFSELGDKTFFIAALLAARN 165 (336)
Q Consensus 127 ~~g~~~~~~~~fl~aF~lIFlAElGDKTQL~a~lLAaR~ 165 (336)
..|+.+.|+-+|..||+.-|+. |+++-.|.+.+
T Consensus 156 ~vGnd~~F~~af~vAflFnwIG------Flltycl~tT~ 188 (262)
T KOG4812|consen 156 RVGNDGIFMWAFIVAFLFNWIG------FLLTYCLTTTH 188 (262)
T ss_pred ccccchHHHHHHHHHHHHHHHH------HHHHHHHHhhH
Confidence 3577778888888888887774 55555554433
Done!