Query 019749
Match_columns 336
No_of_seqs 228 out of 1193
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 06:32:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019749.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019749hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1p7a_A BF3, BKLF, kruppel-like 29.8 28 0.00097 20.4 1.9 21 11-31 3-23 (37)
2 2epx_A Zinc finger protein 28 22.1 50 0.0017 20.4 2.1 23 8-30 1-23 (47)
3 2lx0_A Membrane fusion protein 21.7 86 0.003 20.3 3.0 17 212-228 11-27 (32)
4 2enh_A Zinc finger protein 28 19.0 71 0.0024 19.8 2.3 23 9-31 2-24 (46)
5 2yte_A Zinc finger protein 473 18.5 72 0.0025 19.1 2.2 21 11-31 2-22 (42)
6 2eon_A ZFP-95, zinc finger pro 18.4 70 0.0024 19.8 2.2 23 9-31 2-24 (46)
7 2ytb_A Zinc finger protein 32; 17.8 69 0.0024 19.2 2.0 21 11-31 3-23 (42)
8 2eoh_A Zinc finger protein 28 16.7 85 0.0029 19.4 2.3 23 9-31 2-24 (46)
9 2eom_A ZFP-95, zinc finger pro 16.4 87 0.003 19.4 2.3 23 9-31 2-24 (46)
10 2emz_A ZFP-95, zinc finger pro 16.3 89 0.003 19.3 2.3 22 10-31 3-24 (46)
No 1
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=29.81 E-value=28 Score=20.39 Aligned_cols=21 Identities=10% Similarity=0.121 Sum_probs=17.1
Q ss_pred ccccCCCCCCCCCCCCccCCc
Q 019749 11 LKAHSLPSSASYPKASKSCGS 31 (336)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~ 31 (336)
.+.|.-..|+.|+...|.|..
T Consensus 3 ~~~h~~~k~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 3 TRGSTGIKPFQCPDCDRSFSR 23 (37)
T ss_dssp SSTTCCSSSBCCTTTCCCBSS
T ss_pred CCcCCCCCCccCCCCCcccCc
Confidence 467888899999998887654
No 2
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.14 E-value=50 Score=20.40 Aligned_cols=23 Identities=9% Similarity=-0.185 Sum_probs=18.2
Q ss_pred cccccccCCCCCCCCCCCCccCC
Q 019749 8 WSGLKAHSLPSSASYPKASKSCG 30 (336)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~ 30 (336)
++-++.|.-..|+.|+.-.|.|.
T Consensus 1 ~~H~~~H~~~k~~~C~~C~k~F~ 23 (47)
T 2epx_A 1 GSSGSSGTGKKPYECIECGKAFI 23 (47)
T ss_dssp CCCCCCCCCCCSBCCSSSCCCBS
T ss_pred CccccccCCCCCEECCccCchhC
Confidence 34568899999999998888554
No 3
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=21.69 E-value=86 Score=20.26 Aligned_cols=17 Identities=18% Similarity=0.295 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHhh
Q 019749 212 DIAAVCLLVYFGVSTLL 228 (336)
Q Consensus 212 ~i~AavLFl~FGl~tL~ 228 (336)
..++..-|+.||+|+..
T Consensus 11 glvalltflafgfwlfk 27 (32)
T 2lx0_A 11 GLVALLTFLAFGFWLFK 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445569999999864
No 4
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=18.97 E-value=71 Score=19.75 Aligned_cols=23 Identities=9% Similarity=-0.081 Sum_probs=17.9
Q ss_pred ccccccCCCCCCCCCCCCccCCc
Q 019749 9 SGLKAHSLPSSASYPKASKSCGS 31 (336)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~ 31 (336)
|..+.|.-..|+.|+.-.|.|..
T Consensus 2 ~h~~~h~~~k~~~C~~C~k~F~~ 24 (46)
T 2enh_A 2 SSGSSGTGEKPYECDVCRKAFSH 24 (46)
T ss_dssp CCCCCCCCSSSCBCTTTCCBCSS
T ss_pred CCCCCcCCCCCcCCCCcCchhCC
Confidence 34578999999999998886543
No 5
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=18.51 E-value=72 Score=19.08 Aligned_cols=21 Identities=10% Similarity=0.011 Sum_probs=16.5
Q ss_pred ccccCCCCCCCCCCCCccCCc
Q 019749 11 LKAHSLPSSASYPKASKSCGS 31 (336)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~ 31 (336)
.+.|.-..|++|+.-.|.|..
T Consensus 2 ~~~H~~~k~~~C~~C~k~f~~ 22 (42)
T 2yte_A 2 SSGSSGEKPYSCAECKETFSD 22 (42)
T ss_dssp CSSSCSCCSCBCTTTCCBCSS
T ss_pred CcCcCCCCCeECCCCCCccCC
Confidence 367888899999998886544
No 6
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=18.39 E-value=70 Score=19.85 Aligned_cols=23 Identities=9% Similarity=-0.098 Sum_probs=18.0
Q ss_pred ccccccCCCCCCCCCCCCccCCc
Q 019749 9 SGLKAHSLPSSASYPKASKSCGS 31 (336)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~ 31 (336)
+..+.|.-..|+.|+.-.|.|..
T Consensus 2 ~h~~~H~~~k~~~C~~C~k~f~~ 24 (46)
T 2eon_A 2 SSGSSGTGEKPYKCQVCGKAFRV 24 (46)
T ss_dssp CCSSSCSSCCSCBCSSSCCBCSS
T ss_pred CCCCCCCCCcccCCCCCCcccCc
Confidence 34578999999999998886544
No 7
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=17.84 E-value=69 Score=19.16 Aligned_cols=21 Identities=5% Similarity=-0.051 Sum_probs=16.6
Q ss_pred ccccCCCCCCCCCCCCccCCc
Q 019749 11 LKAHSLPSSASYPKASKSCGS 31 (336)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~ 31 (336)
.+.|.-..|++|+.-.|.|..
T Consensus 3 ~~~H~~~k~~~C~~C~k~f~~ 23 (42)
T 2ytb_A 3 SGSSGGEKPYRCDQCGKAFSQ 23 (42)
T ss_dssp CCCCCSCCSBCCTTTTCCBSS
T ss_pred ccccCCCCCeeCCCccchhCC
Confidence 367888899999998886554
No 8
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=16.66 E-value=85 Score=19.36 Aligned_cols=23 Identities=13% Similarity=-0.088 Sum_probs=17.9
Q ss_pred ccccccCCCCCCCCCCCCccCCc
Q 019749 9 SGLKAHSLPSSASYPKASKSCGS 31 (336)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~ 31 (336)
+-++.|.-..|+.|+.-.|.|..
T Consensus 2 ~H~~~H~~~k~~~C~~C~k~f~~ 24 (46)
T 2eoh_A 2 SSGSSGSGKKPYECKECRKTFIQ 24 (46)
T ss_dssp CCCCSCCCSCSCCCSSSCCCCSS
T ss_pred CCCCCcCCCCCcCCCCcCchhCC
Confidence 34678998999999998886543
No 9
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=16.38 E-value=87 Score=19.37 Aligned_cols=23 Identities=9% Similarity=-0.159 Sum_probs=17.9
Q ss_pred ccccccCCCCCCCCCCCCccCCc
Q 019749 9 SGLKAHSLPSSASYPKASKSCGS 31 (336)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~ 31 (336)
+..+.|.-..|++|+.-.|.|..
T Consensus 2 ~~~~~h~~~k~~~C~~C~k~F~~ 24 (46)
T 2eom_A 2 SSGSSGHGERGHRCSDCGKFFLQ 24 (46)
T ss_dssp CCCCCCCCCSSCCCSSSCCCCSS
T ss_pred CCCCCCCCCCCcCCCCCCCeeCC
Confidence 34578999999999998886543
No 10
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=16.30 E-value=89 Score=19.27 Aligned_cols=22 Identities=14% Similarity=0.018 Sum_probs=17.4
Q ss_pred cccccCCCCCCCCCCCCccCCc
Q 019749 10 GLKAHSLPSSASYPKASKSCGS 31 (336)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~ 31 (336)
-++.|+-..|++|+.-.|.|..
T Consensus 3 h~~~H~~~k~~~C~~C~k~f~~ 24 (46)
T 2emz_A 3 SGSSGSGERPFKCNECGKGFGR 24 (46)
T ss_dssp CCSCSSCCCSCCCSSSCCCCSS
T ss_pred CCcCCCCCCCeECCCCCcccCC
Confidence 3578999999999998886544
Done!