Query 019749
Match_columns 336
No_of_seqs 228 out of 1193
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 06:32:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019749.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019749hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1p7aa_ g.37.1.1 (A:) Kruppel- 36.8 7.9 0.00058 24.0 1.8 21 11-31 3-23 (37)
2 d2ct1a2 g.37.1.1 (A:8-43) Tran 33.0 6.4 0.00047 24.5 0.9 19 12-30 1-19 (36)
3 d1x6ha2 g.37.1.1 (A:8-43) Tran 18.0 17 0.0013 22.3 0.7 19 12-30 1-19 (36)
4 d2cota2 g.37.1.1 (A:7-44) Zinc 12.1 54 0.0039 20.0 2.0 20 12-31 5-24 (38)
5 d2dlqa2 g.37.1.1 (A:35-62) GLI 8.4 62 0.0045 19.0 1.1 9 19-27 1-9 (28)
6 d1zuea1 g.9.1.1 (A:1-42) Defen 7.0 56 0.0041 20.9 0.4 11 66-76 31-41 (42)
7 d1q90g_ f.23.26.1 (G:) PetG su 6.7 2.5E+02 0.018 16.5 3.4 22 299-320 6-27 (30)
8 d1pv7a_ f.38.1.2 (A:) Lactose 6.6 2.4E+02 0.018 21.7 4.4 22 309-330 271-292 (417)
9 d1srka_ g.37.1.1 (A:) Zinc fin 6.5 67 0.0049 19.5 0.6 18 14-31 2-19 (35)
10 d1x6ea1 g.37.1.1 (A:8-40) Zinc 6.2 72 0.0052 19.1 0.6 18 14-31 2-19 (33)
No 1
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}
Probab=36.78 E-value=7.9 Score=24.04 Aligned_cols=21 Identities=10% Similarity=0.121 Sum_probs=18.2
Q ss_pred ccccCCCCCCCCCCCCccCCc
Q 019749 11 LKAHSLPSSASYPKASKSCGS 31 (336)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~ 31 (336)
.|.|+-..||+|+.-.|+|+.
T Consensus 3 ~R~HTgeKPy~C~~C~k~F~~ 23 (37)
T d1p7aa_ 3 TRGSTGIKPFQCPDCDRSFSR 23 (37)
T ss_dssp SSTTCCSSSBCCTTTCCCBSS
T ss_pred CCccCCccCeEeCCCCCEecC
Confidence 488999999999999997654
No 2
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.99 E-value=6.4 Score=24.49 Aligned_cols=19 Identities=11% Similarity=-0.046 Sum_probs=16.4
Q ss_pred cccCCCCCCCCCCCCccCC
Q 019749 12 KAHSLPSSASYPKASKSCG 30 (336)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~ 30 (336)
|.|+-..||+|+--.|.|+
T Consensus 1 R~HTgekP~~C~~C~k~F~ 19 (36)
T d2ct1a2 1 RTHSGEKPYECYICHARFT 19 (36)
T ss_dssp CCCSCCCSEECTTTCCEES
T ss_pred CccCCCCCEeCCCCccccc
Confidence 6799999999999998654
No 3
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.04 E-value=17 Score=22.27 Aligned_cols=19 Identities=11% Similarity=0.172 Sum_probs=16.4
Q ss_pred cccCCCCCCCCCCCCccCC
Q 019749 12 KAHSLPSSASYPKASKSCG 30 (336)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~ 30 (336)
|.|+-+.|+.|+.-.|.|.
T Consensus 1 R~HTgekPy~C~~C~k~F~ 19 (36)
T d1x6ha2 1 RTHTGEKPYACSHCDKTFR 19 (36)
T ss_dssp TTCCCCCCEECSSSSCEES
T ss_pred CCCCCCCCEECCCCCCCcC
Confidence 6799999999999999654
No 4
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.10 E-value=54 Score=19.96 Aligned_cols=20 Identities=10% Similarity=-0.050 Sum_probs=16.7
Q ss_pred cccCCCCCCCCCCCCccCCc
Q 019749 12 KAHSLPSSASYPKASKSCGS 31 (336)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~ 31 (336)
+.|+-..||.|+.-.|.|..
T Consensus 5 ~~Ht~ekpy~C~~CgK~F~~ 24 (38)
T d2cota2 5 WQQRERRRYKCDECGKSFSH 24 (38)
T ss_dssp SCCCCSCSSBCSSSCCBCSC
T ss_pred cccCCCCCEecCCCCceeeC
Confidence 67899999999999996543
No 5
>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.44 E-value=62 Score=19.01 Aligned_cols=9 Identities=33% Similarity=0.471 Sum_probs=7.0
Q ss_pred CCCCCCCCc
Q 019749 19 SASYPKASK 27 (336)
Q Consensus 19 ~~~~~~~~~ 27 (336)
||+|+|..|
T Consensus 1 pf~c~kcgk 9 (28)
T d2dlqa2 1 PFECPKCGK 9 (28)
T ss_dssp SCBCTTTCC
T ss_pred CCccccchh
Confidence 678888776
No 6
>d1zuea1 g.9.1.1 (A:1-42) Defensin-like peptide, DLP {Duckbilled platypus (Ornithorhynchus anatinus), DLP-2 [TaxId: 9258]}
Probab=7.01 E-value=56 Score=20.86 Aligned_cols=11 Identities=55% Similarity=1.035 Sum_probs=8.9
Q ss_pred ccccccccccc
Q 019749 66 SCENRNDVDCK 76 (336)
Q Consensus 66 ~~~~~~~~~~~ 76 (336)
.|||+|.+-|+
T Consensus 31 ycen~nq~cc~ 41 (42)
T d1zuea1 31 YCENRNQKCCE 41 (42)
T ss_dssp BCSSTTEEEEC
T ss_pred eecCCCccccc
Confidence 58999888775
No 7
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.66 E-value=2.5e+02 Score=16.54 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=17.9
Q ss_pred ehHHHHHHHHHHHHHHHHHHHh
Q 019749 299 IGGALAGHVVATLLAVLGGSLL 320 (336)
Q Consensus 299 ~~Ga~lgl~l~t~laVl~G~~l 320 (336)
..|.++|++-.++.+.+...++
T Consensus 6 l~GivlGlipiTl~Glfv~Ayl 27 (30)
T d1q90g_ 6 LCGIVLGLVPVTIAGLFVTAYL 27 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHhhHHHHHHHHHHHHHH
Confidence 4688899999998888877766
No 8
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=6.56 E-value=2.4e+02 Score=21.70 Aligned_cols=22 Identities=9% Similarity=-0.100 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhhhcccHHHHh
Q 019749 309 ATLLAVLGGSLLGTFLSEKVYS 330 (336)
Q Consensus 309 ~t~laVl~G~~l~~~is~r~i~ 330 (336)
+..++.....++.+|...+.+-
T Consensus 271 ~~~~~~~~~~~l~~r~~~~~~~ 292 (417)
T d1pv7a_ 271 LNASIMFFAPLIINRIGGKNAL 292 (417)
T ss_dssp HHHHHHTTHHHHHHHHCHHHHH
T ss_pred ccccchhhhhhhhcccccccch
Confidence 3334444444455555555443
No 9
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.49 E-value=67 Score=19.50 Aligned_cols=18 Identities=6% Similarity=-0.189 Sum_probs=14.3
Q ss_pred cCCCCCCCCCCCCccCCc
Q 019749 14 HSLPSSASYPKASKSCGS 31 (336)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~ 31 (336)
|+-..||+|+...|.|+.
T Consensus 2 ~TGekPy~C~~C~k~F~~ 19 (35)
T d1srka_ 2 SSGKRPFVCRICLSAFTT 19 (35)
T ss_dssp CSCCSCEECSSSCCEESS
T ss_pred CCCCccccCCCCCCcccC
Confidence 677889999999986543
No 10
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.17 E-value=72 Score=19.12 Aligned_cols=18 Identities=17% Similarity=0.104 Sum_probs=14.8
Q ss_pred cCCCCCCCCCCCCccCCc
Q 019749 14 HSLPSSASYPKASKSCGS 31 (336)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~ 31 (336)
|+-..|+.|+.-.|+|..
T Consensus 2 HTgekpy~C~~Cgk~F~~ 19 (33)
T d1x6ea1 2 HSGEKPYGCVECGKAFSR 19 (33)
T ss_dssp TTTCCCEECSSSCCEESS
T ss_pred cCCCCCeeCCCCCCEeCc
Confidence 778899999999996653
Done!