Your job contains 1 sequence.
>019751
MAVIPRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVI
KKIARKELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQE
GDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEP
AAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNLTCYC
LCDSWLGCDKRTNLKVKILKRTRAGTRGGIVSEEGPIVEDGAEEEEEDEEEEYDDYESEY
SEDEEDERDTKKKVPAANGTVSKKGTNSELSGSDEE
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 019751
(336 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2016354 - symbol:ATERDJ2A species:3702 "Arabid... 1085 2.1e-113 2
TAIR|locus:2127373 - symbol:ATERDJ2B species:3702 "Arabid... 861 2.1e-88 2
UNIPROTKB|F1SU36 - symbol:SNRNP200 "Uncharacterized prote... 120 1.2e-07 2
ZFIN|ZDB-GENE-081105-64 - symbol:si:ch211-251j10.5 "si:ch... 134 4.0e-07 2
FB|FBgn0263599 - symbol:l(3)72Ab "lethal (3) 72Ab" specie... 127 4.7e-07 2
GENEDB_PFALCIPARUM|PF13_0102 - symbol:PF13_0102 "DNAJ-lik... 105 1.1e-06 2
UNIPROTKB|Q8IEC8 - symbol:PF13_0102 "DnaJ/SEC63 protein, ... 105 1.1e-06 2
UNIPROTKB|F1LNJ2 - symbol:Ascc3l1 "Protein Ascc3l1" speci... 117 3.9e-06 2
WB|WBGene00012896 - symbol:snrp-200 species:6239 "Caenorh... 134 4.2e-06 2
UNIPROTKB|Q9U2G0 - symbol:Y46G5A.4 "Putative U5 small nuc... 134 4.2e-06 2
UNIPROTKB|O75643 - symbol:SNRNP200 "U5 small nuclear ribo... 117 6.2e-06 2
UNIPROTKB|E1BH78 - symbol:LOC100850262 "Uncharacterized p... 116 8.0e-06 2
DICTYBASE|DDB_G0270042 - symbol:ascc3l "U5 small nuclear ... 110 6.5e-05 2
>TAIR|locus:2016354 [details] [associations]
symbol:ATERDJ2A species:3702 "Arabidopsis thaliana"
[GO:0006457 "protein folding" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0031072 "heat shock protein
binding" evidence=IEA] [GO:0051082 "unfolded protein binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0030176 "integral to endoplasmic reticulum
membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
[GO:0005794 "Golgi apparatus" evidence=IDA] [GO:0030968
"endoplasmic reticulum unfolded protein response" evidence=RCA]
InterPro:IPR027137 InterPro:IPR001623 Pfam:PF00226 EMBL:CP002684
GO:GO:0005739 GO:GO:0005886 GO:GO:0005794 GO:GO:0006457
GO:GO:0030176 Gene3D:1.10.287.110 PRINTS:PR00625 SMART:SM00271
SUPFAM:SSF46565 PROSITE:PS50076 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 KO:K09540 PANTHER:PTHR24075
EMBL:AK227714 IPI:IPI00846610 RefSeq:NP_001031306.2
RefSeq:NP_001117623.1 RefSeq:NP_178112.2 UniGene:At.34014
ProteinModelPortal:Q0WT48 SMR:Q0WT48 PRIDE:Q0WT48
EnsemblPlants:AT1G79940.1 EnsemblPlants:AT1G79940.2
EnsemblPlants:AT1G79940.3 GeneID:844334 KEGG:ath:AT1G79940
TAIR:At1g79940 HOGENOM:HOG000240711 InParanoid:Q0WT48 OMA:GVCILLP
PhylomeDB:Q0WT48 ProtClustDB:CLSN2689532 Genevestigator:Q0WT48
Uniprot:Q0WT48
Length = 687
Score = 1085 (387.0 bits), Expect = 2.1e-113, Sum P(2) = 2.1e-113
Identities = 207/287 (72%), Positives = 246/287 (85%)
Query: 1 MAVIPRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVI 60
MAVIPRTAQGHGWLRPAVGVVELSQ I+QAVPLS+RK++G S+EG +PFLQLPHF++AV+
Sbjct: 343 MAVIPRTAQGHGWLRPAVGVVELSQCIVQAVPLSARKSSGVSSEGISPFLQLPHFSDAVV 402
Query: 61 KKIARK------ELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLXXXXXXXXXX 114
KKIARK +L++M L+DR+ELL+QV G S+T+V+D+E VL+MMPS+
Sbjct: 403 KKIARKKVKSFQDLQEMRLEDRSELLTQVAGLSATDVEDIEKVLEMMPSITVDITCETEG 462
Query: 115 XXXIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKV 174
IQEGDIVT+QAWVTLKR NGL+GALPHAPY+PFHKEEN+W LLADSVSNNVWFSQKV
Sbjct: 463 EEGIQEGDIVTLQAWVTLKRPNGLVGALPHAPYFPFHKEENYWVLLADSVSNNVWFSQKV 522
Query: 175 SFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNY 234
SF+DE AITAASKAI ++MEGSGA VKET+ AVREA EKV+ GSRLVMGK+QAPAEG Y
Sbjct: 523 SFLDEGGAITAASKAISESMEGSGAGVKETNDAVREAIEKVKGGSRLVMGKLQAPAEGTY 582
Query: 235 NLTCYCLCDSWLGCDKRTNLKVKILKRTRAGTRGGIVSEEGPIVEDG 281
NLTC+CLCD+W+GCDK+ LKVK+LKRTRAGTRG +VS+EG I E+G
Sbjct: 583 NLTCFCLCDTWIGCDKKQALKVKVLKRTRAGTRG-LVSDEGAIAEEG 628
Score = 54 (24.1 bits), Expect = 2.1e-113, Sum P(2) = 2.1e-113
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 317 ANGTVS-KKGTNSELSGSDEE 336
ANG+V KK ++SE SGS+EE
Sbjct: 667 ANGSVKQKKESSSEESGSEEE 687
>TAIR|locus:2127373 [details] [associations]
symbol:ATERDJ2B species:3702 "Arabidopsis thaliana"
[GO:0006457 "protein folding" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0031072 "heat shock protein
binding" evidence=IEA] [GO:0051082 "unfolded protein binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0030176 "integral
to endoplasmic reticulum membrane" evidence=IDA] InterPro:IPR027137
InterPro:IPR001623 Pfam:PF00226 GO:GO:0005886 GO:GO:0006457
EMBL:CP002687 GO:GO:0030176 Gene3D:1.10.287.110 PRINTS:PR00625
SMART:SM00271 SUPFAM:SSF46565 PROSITE:PS50076 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 UniGene:At.23696
UniGene:At.71130 KO:K09540 PANTHER:PTHR24075 OMA:ARFIPPG
IPI:IPI00518885 RefSeq:NP_567621.1 ProteinModelPortal:F4JIN3
SMR:F4JIN3 PRIDE:F4JIN3 EnsemblPlants:AT4G21180.1 GeneID:827866
KEGG:ath:AT4G21180 Uniprot:F4JIN3
Length = 661
Score = 861 (308.1 bits), Expect = 2.1e-88, Sum P(2) = 2.1e-88
Identities = 172/285 (60%), Positives = 216/285 (75%)
Query: 1 MAVIPRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVI 60
MAVIPR QG GWLRPA+GV+ELSQ I+QAVPLS+RK+ S+E APFLQLPHF E++
Sbjct: 343 MAVIPRNEQGRGWLRPALGVMELSQCIVQAVPLSARKS---SSEDIAPFLQLPHFNESIA 399
Query: 61 KKIARK-----ELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLXXXXXXXXXXX 115
K IA + + +++SL +R++LL +V S T+VQD+E VL+M+PSL
Sbjct: 400 KSIALQVKSFQKFQELSLAERSKLLREVVSLSETDVQDIEKVLEMIPSLKINVTCKTEGE 459
Query: 116 XXIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVS 175
IQEGDI+T+QAW+TLKR NGLIGA+PH+PY+PFHKEENFW LLADS N+VWF QKV
Sbjct: 460 EGIQEGDIMTVQAWITLKRPNGLIGAIPHSPYFPFHKEENFWVLLADS--NHVWFFQKVK 517
Query: 176 FMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYN 235
FMDE AI AAS I +TME GA+VKET+ AV+EA EKV+SGSRLVMG++ AP EG YN
Sbjct: 518 FMDEAGAIAAASNTITETMEPLGASVKETNDAVKEAVEKVKSGSRLVMGRLLAPGEGTYN 577
Query: 236 LTCYCLCDSWLGCDKRTNLKVKILKRTRAGTRGGIVSEEGPIVED 280
LTC+CL D+W+GCD++T+LKV++LKRTR G +EEG ED
Sbjct: 578 LTCFCLSDTWIGCDQKTSLKVEVLKRTRDVE--GENAEEGLEEED 620
Score = 41 (19.5 bits), Expect = 2.1e-88, Sum P(2) = 2.1e-88
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 324 KGTNSELSGSDEE 336
K ++SE SGSDEE
Sbjct: 649 KESSSEESGSDEE 661
>UNIPROTKB|F1SU36 [details] [associations]
symbol:SNRNP200 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0004386 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 GeneTree:ENSGT00640000091272 EMBL:CU896688
Ensembl:ENSSSCT00000008906 OMA:QSSKKEF Uniprot:F1SU36
Length = 553
Score = 120 (47.3 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 44/164 (26%), Positives = 76/164 (46%)
Query: 11 HGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK---- 66
+GWL PA+ +EL+Q + QA + S+ + QLPHFT IK+ K
Sbjct: 350 NGWLSPALAAMELAQMVTQA--MWSKDSY---------LKQLPHFTSEHIKRCTDKGVES 398
Query: 67 --ELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLXXXXXXXXXXXXXIQEGDIV 124
++ +M ++R LL S +++ DV P++ I+ G V
Sbjct: 399 VFDIMEMEDEERNALLQ----LSDSQIADVARFCNRYPNIELSYEVVDKDS--IRSGGPV 452
Query: 125 TIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNV 168
+ V L+R + G + AP +P +EE +W ++ D+ SN++
Sbjct: 453 VVL--VQLEREEEVTGPVI-APLFPQKREEGWWVVIGDAKSNSL 493
Score = 72 (30.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 228 APAEGNYNLTCYCLCDSWLGCDKRTNLKVKI 258
APA G +N T Y + D+++GCD+ V +
Sbjct: 513 APATGAHNYTLYFMSDAYMGCDQEYKFSVDV 543
>ZFIN|ZDB-GENE-081105-64 [details] [associations]
symbol:si:ch211-251j10.5 "si:ch211-251j10.5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 ZFIN:ZDB-GENE-081105-64 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
HOVERGEN:HBG051896 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 KO:K12854 GO:GO:0008026 EMBL:BX640472
EMBL:CR376723 IPI:IPI00608684 RefSeq:NP_001116729.1
UniGene:Dr.32574 SMR:B0S754 Ensembl:ENSDART00000109885
GeneID:799690 KEGG:dre:799690 NextBio:20933935 Uniprot:B0S754
Length = 2134
Score = 134 (52.2 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 47/164 (28%), Positives = 76/164 (46%)
Query: 11 HGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK---- 66
+GWL PA+ +EL+Q + QA + S+ + QLPHFT +IK+ K
Sbjct: 1929 NGWLSPALAAMELAQMVTQA--MWSKDSY---------LRQLPHFTSELIKRCTDKGVES 1977
Query: 67 --ELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLXXXXXXXXXXXXXIQEGDIV 124
++ +M +DR LL S +V DV P++ I+ G V
Sbjct: 1978 IFDIMEMEDEDRTGLLQ----LSDVQVADVARFCNRYPNIELSYEVVDKDD--IKSGSPV 2031
Query: 125 TIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNV 168
+Q V L+R + G + AP +P +EE +W ++ D SN++
Sbjct: 2032 VVQ--VQLEREEEVTGPVI-APLFPQKREEGWWVVIGDPKSNSL 2072
Score = 65 (27.9 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 228 APAEGNYNLTCYCLCDSWLGCDKRTNLKVKILKRTRAG 265
AP G +N T Y + D+++GCD+ ++ + G
Sbjct: 2092 APVVGVHNYTLYFMSDAYMGCDQEYKFSTEVKEADSEG 2129
>FB|FBgn0263599 [details] [associations]
symbol:l(3)72Ab "lethal (3) 72Ab" species:7227 "Drosophila
melanogaster" [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS] [GO:0005682 "U5 snRNP" evidence=ISS] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014296
GO:GO:0007067 GO:GO:0003676 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR
GO:GO:0004004 GO:GO:0000381 EMBL:BT016121 EMBL:AY069270
RefSeq:NP_648818.3 UniGene:Dm.973 ProteinModelPortal:Q9VUV9
SMR:Q9VUV9 IntAct:Q9VUV9 STRING:Q9VUV9 PaxDb:Q9VUV9 PRIDE:Q9VUV9
EnsemblMetazoa:FBtr0075527 GeneID:39737 KEGG:dme:Dmel_CG5931
FlyBase:FBgn0036548 InParanoid:Q9VUV9 OrthoDB:EOG4S4MWW
PhylomeDB:Q9VUV9 GenomeRNAi:39737 NextBio:815125 Bgee:Q9VUV9
GermOnline:CG5931 Uniprot:Q9VUV9
Length = 2142
Score = 127 (49.8 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 44/164 (26%), Positives = 76/164 (46%)
Query: 11 HGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARKELRD 70
+GWL PAV +EL+Q + QA + S+ + QLPHF+ ++K+ K++
Sbjct: 1937 NGWLSPAVAAMELAQMVTQA--MWSKDSY---------LKQLPHFSPEIVKRCTEKKIET 1985
Query: 71 ----MSLQD--RAELLSQVGGFSSTEVQDVEMVLQMMPSLXXXXXXXXXXXXXIQEGDIV 124
M L+D R LL S ++ DV P++ I G
Sbjct: 1986 VFDIMELEDEDRTRLLQ----LSDLQMADVARFCNRYPNIELNYEVVDKDR--INSGS-- 2037
Query: 125 TIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNV 168
T+ V L+R + + G + AP++P +EE +W ++ D +N++
Sbjct: 2038 TVNVVVQLEREDEVTGPVI-APFFPQKREEGWWVVIGDPKTNSL 2080
Score = 72 (30.4 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 228 APAEGNYNLTCYCLCDSWLGCDKRTNLKVKI 258
AP+ G ++ T Y + DS+LGCD+ +++
Sbjct: 2100 APSPGKHDYTLYYMSDSYLGCDQEYKFSIEV 2130
>GENEDB_PFALCIPARUM|PF13_0102 [details] [associations]
symbol:PF13_0102 "DNAJ-like Sec63 homologue"
species:5833 "Plasmodium falciparum" [GO:0030176 "integral to
endoplasmic reticulum membrane" evidence=ISS] [GO:0005784 "Sec61
translocon complex" evidence=ISS] [GO:0045047 "protein targeting to
ER" evidence=ISS] InterPro:IPR027137 InterPro:IPR001623
InterPro:IPR018253 Pfam:PF00226 GO:GO:0006457 GO:GO:0030176
Gene3D:1.10.287.110 PRINTS:PR00625 SMART:SM00271 SUPFAM:SSF46565
PROSITE:PS00636 PROSITE:PS50076 GO:GO:0005784 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 EMBL:AL844509 HSSP:P08622 GO:GO:0045047
KO:K09540 PANTHER:PTHR24075 RefSeq:XP_001349924.1
ProteinModelPortal:Q8IEC8 IntAct:Q8IEC8 MINT:MINT-1606227
PRIDE:Q8IEC8 EnsemblProtists:PF13_0102:mRNA GeneID:814078
KEGG:pfa:PF13_0102 EuPathDB:PlasmoDB:PF3D7_1318800
HOGENOM:HOG000280883 OMA:RIWERIG ProtClustDB:CLSZ2429140
Uniprot:Q8IEC8
Length = 651
Score = 105 (42.0 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 31/118 (26%), Positives = 52/118 (44%)
Query: 50 LQLPHFTEAVIK-----KIARKELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSL 104
LQ+PHF E +++ K + KE+ D QD V + ++ DV+ +P +
Sbjct: 391 LQIPHFDENIVRHVHKGKFSVKEVLDFVHQDHENRKGLVD-MNPDQILDVKSFCNTIPDI 449
Query: 105 XXXXXXXXXXXXXIQEGDIVTIQAWV---TLKRGNGLIGALPHAPYYPFHKEENFWFL 159
I +GD+ ++ + LK N G + HAPY+P K E +W +
Sbjct: 450 KMTAHIVVEDETHIVKGDVASVYVQIDRSNLKE-NEAAGYI-HAPYFPQPKFEEWWII 505
Score = 81 (33.6 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 14/50 (28%), Positives = 31/50 (62%)
Query: 215 VRSGSRLVMGKIQAPAE--GNYNLTCYCLCDSWLGCDKRTNLKVKILKRT 262
V++ +++ K+Q + GN +++ + LCDS+ GCD++ ++ K +T
Sbjct: 520 VKNCEKIIEEKLQFLVDKVGNLSVSVFALCDSYFGCDQKVDIPFKAYSKT 569
>UNIPROTKB|Q8IEC8 [details] [associations]
symbol:PF13_0102 "DnaJ/SEC63 protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005784 "Sec61
translocon complex" evidence=ISS] [GO:0030176 "integral to
endoplasmic reticulum membrane" evidence=ISS] [GO:0045047 "protein
targeting to ER" evidence=ISS] InterPro:IPR027137
InterPro:IPR001623 InterPro:IPR018253 Pfam:PF00226 GO:GO:0006457
GO:GO:0030176 Gene3D:1.10.287.110 PRINTS:PR00625 SMART:SM00271
SUPFAM:SSF46565 PROSITE:PS00636 PROSITE:PS50076 GO:GO:0005784
InterPro:IPR004179 Pfam:PF02889 SMART:SM00973 EMBL:AL844509
HSSP:P08622 GO:GO:0045047 KO:K09540 PANTHER:PTHR24075
RefSeq:XP_001349924.1 ProteinModelPortal:Q8IEC8 IntAct:Q8IEC8
MINT:MINT-1606227 PRIDE:Q8IEC8 EnsemblProtists:PF13_0102:mRNA
GeneID:814078 KEGG:pfa:PF13_0102 EuPathDB:PlasmoDB:PF3D7_1318800
HOGENOM:HOG000280883 OMA:RIWERIG ProtClustDB:CLSZ2429140
Uniprot:Q8IEC8
Length = 651
Score = 105 (42.0 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 31/118 (26%), Positives = 52/118 (44%)
Query: 50 LQLPHFTEAVIK-----KIARKELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSL 104
LQ+PHF E +++ K + KE+ D QD V + ++ DV+ +P +
Sbjct: 391 LQIPHFDENIVRHVHKGKFSVKEVLDFVHQDHENRKGLVD-MNPDQILDVKSFCNTIPDI 449
Query: 105 XXXXXXXXXXXXXIQEGDIVTIQAWV---TLKRGNGLIGALPHAPYYPFHKEENFWFL 159
I +GD+ ++ + LK N G + HAPY+P K E +W +
Sbjct: 450 KMTAHIVVEDETHIVKGDVASVYVQIDRSNLKE-NEAAGYI-HAPYFPQPKFEEWWII 505
Score = 81 (33.6 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 14/50 (28%), Positives = 31/50 (62%)
Query: 215 VRSGSRLVMGKIQAPAE--GNYNLTCYCLCDSWLGCDKRTNLKVKILKRT 262
V++ +++ K+Q + GN +++ + LCDS+ GCD++ ++ K +T
Sbjct: 520 VKNCEKIIEEKLQFLVDKVGNLSVSVFALCDSYFGCDQKVDIPFKAYSKT 569
>UNIPROTKB|F1LNJ2 [details] [associations]
symbol:Ascc3l1 "Protein Ascc3l1" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0008380 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973
GeneTree:ENSGT00640000091272 OMA:KWDVLSR GO:GO:0008026
IPI:IPI00562876 PRIDE:F1LNJ2 Ensembl:ENSRNOT00000043895
ArrayExpress:F1LNJ2 Uniprot:F1LNJ2
Length = 2139
Score = 117 (46.2 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 43/164 (26%), Positives = 76/164 (46%)
Query: 11 HGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK---- 66
+GWL PA+ +EL+Q + QA + S+ + QLPHFT IK+ K
Sbjct: 1936 NGWLSPALAAMELAQMVTQA--MWSKDSY---------LKQLPHFTSEHIKRCTDKGVES 1984
Query: 67 --ELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLXXXXXXXXXXXXXIQEGDIV 124
++ +M ++R LL + +++ DV P++ I+ G V
Sbjct: 1985 VFDIMEMEDEERNALLQ----LTDSQIADVARFCNRYPNIELSYEVVDKDS--IRSGGPV 2038
Query: 125 TIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNV 168
+ V L+R + G + AP +P +EE +W ++ D+ SN++
Sbjct: 2039 VVL--VQLEREEEVTGPVI-APLFPQKREEGWWVVIGDAKSNSL 2079
Score = 74 (31.1 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 228 APAEGNYNLTCYCLCDSWLGCDKRTNLKVKI 258
APA G +N T Y + D+++GCD+ V +
Sbjct: 2099 APATGGHNYTLYFMSDAYMGCDQEYKFSVDV 2129
>WB|WBGene00012896 [details] [associations]
symbol:snrp-200 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018991
"oviposition" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0018991 GO:GO:0016477 GO:GO:0008406
GO:GO:0002119 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003676 GO:GO:0042127 GO:GO:0007281 GO:GO:0040020
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 GeneTree:ENSGT00640000091272 KO:K12854
OMA:KWDVLSR GO:GO:0008026 EMBL:AL110485 RefSeq:NP_496710.1
ProteinModelPortal:Q9U2G0 SMR:Q9U2G0 IntAct:Q9U2G0
MINT:MINT-1062451 STRING:Q9U2G0 PaxDb:Q9U2G0
EnsemblMetazoa:Y46G5A.4 GeneID:174901 KEGG:cel:CELE_Y46G5A.4
UCSC:Y46G5A.4 CTD:174901 WormBase:Y46G5A.4 InParanoid:Q9U2G0
NextBio:885976 Uniprot:Q9U2G0
Length = 2145
Score = 134 (52.2 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 50/166 (30%), Positives = 78/166 (46%)
Query: 11 HGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFL-QLPHFTEAVIKKIARKE-- 67
+GWL PA+ +ELSQ + QA+ S E P+L QLPH + A++++ KE
Sbjct: 1932 NGWLSPAIHAMELSQMLTQAMY---------SNE---PYLKQLPHCSAALLERAKAKEVT 1979
Query: 68 ----LRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLXXXXXXXXXXXXXIQEGDI 123
L ++ DR+++L G E+ DV PS+ + D
Sbjct: 1980 SVFELLELENDDRSDILQMEGA----ELADVARFCNHYPSIEVATELENDV---VTSNDN 2032
Query: 124 VTIQAWVTLKRGNGLIGALPH--APYYPF-HKEENFWFLLADSVSN 166
+ + V+L+R N + G P AP +P KEE +W ++ DS SN
Sbjct: 2033 LMLA--VSLERDNDIDGLAPPVVAPLFPQKRKEEGWWLVIGDSESN 2076
Score = 55 (24.4 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 228 APAEGNYNLTCYCLCDSWLGCDKRTNLKVKILKRTRAGTRGGIVSEE 274
AP G++ + + DS+LG D+ ++ K+ + R+ + EE
Sbjct: 2098 APRPGHHKFKLFFISDSYLGADQEFDVAFKVEEPGRSNRKRKHEKEE 2144
>UNIPROTKB|Q9U2G0 [details] [associations]
symbol:Y46G5A.4 "Putative U5 small nuclear
ribonucleoprotein 200 kDa helicase" species:6239 "Caenorhabditis
elegans" [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0018991 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
GO:GO:0008380 GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
GO:GO:0042127 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR GO:GO:0008026
EMBL:AL110485 RefSeq:NP_496710.1 ProteinModelPortal:Q9U2G0
SMR:Q9U2G0 IntAct:Q9U2G0 MINT:MINT-1062451 STRING:Q9U2G0
PaxDb:Q9U2G0 EnsemblMetazoa:Y46G5A.4 GeneID:174901
KEGG:cel:CELE_Y46G5A.4 UCSC:Y46G5A.4 CTD:174901 WormBase:Y46G5A.4
InParanoid:Q9U2G0 NextBio:885976 Uniprot:Q9U2G0
Length = 2145
Score = 134 (52.2 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 50/166 (30%), Positives = 78/166 (46%)
Query: 11 HGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFL-QLPHFTEAVIKKIARKE-- 67
+GWL PA+ +ELSQ + QA+ S E P+L QLPH + A++++ KE
Sbjct: 1932 NGWLSPAIHAMELSQMLTQAMY---------SNE---PYLKQLPHCSAALLERAKAKEVT 1979
Query: 68 ----LRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLXXXXXXXXXXXXXIQEGDI 123
L ++ DR+++L G E+ DV PS+ + D
Sbjct: 1980 SVFELLELENDDRSDILQMEGA----ELADVARFCNHYPSIEVATELENDV---VTSNDN 2032
Query: 124 VTIQAWVTLKRGNGLIGALPH--APYYPF-HKEENFWFLLADSVSN 166
+ + V+L+R N + G P AP +P KEE +W ++ DS SN
Sbjct: 2033 LMLA--VSLERDNDIDGLAPPVVAPLFPQKRKEEGWWLVIGDSESN 2076
Score = 55 (24.4 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 228 APAEGNYNLTCYCLCDSWLGCDKRTNLKVKILKRTRAGTRGGIVSEE 274
AP G++ + + DS+LG D+ ++ K+ + R+ + EE
Sbjct: 2098 APRPGHHKFKLFFISDSYLGADQEFDVAFKVEEPGRSNRKRKHEKEE 2144
>UNIPROTKB|O75643 [details] [associations]
symbol:SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa
helicase" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;IDA;TAS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0000354 "cis assembly of pre-catalytic
spliceosome" evidence=IC] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0008026 "ATP-dependent helicase
activity" evidence=IDA] [GO:0005682 "U5 snRNP" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0005682 GO:GO:0003676
Orphanet:791 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOVERGEN:HBG051896 KO:K12854
OMA:KWDVLSR GO:GO:0008026 GO:GO:0000354 EMBL:AY572488 EMBL:AK024391
EMBL:AK090671 EMBL:AB018331 EMBL:Z70200 EMBL:BC065924 EMBL:BC007577
IPI:IPI00168235 IPI:IPI00420014 RefSeq:NP_054733.2
UniGene:Hs.246112 PDB:2Q0Z PDB:4F91 PDB:4F92 PDB:4F93 PDBsum:2Q0Z
PDBsum:4F91 PDBsum:4F92 PDBsum:4F93 ProteinModelPortal:O75643
SMR:O75643 IntAct:O75643 MINT:MINT-5003904 STRING:O75643
PhosphoSite:O75643 PaxDb:O75643 PeptideAtlas:O75643 PRIDE:O75643
Ensembl:ENST00000323853 GeneID:23020 KEGG:hsa:23020 UCSC:uc002svu.3
CTD:23020 GeneCards:GC02M096940 H-InvDB:HIX0002273 HGNC:HGNC:30859
HPA:HPA029321 MIM:601664 MIM:610359 neXtProt:NX_O75643
PharmGKB:PA164726004 InParanoid:O75643 OrthoDB:EOG4WM4SS
PhylomeDB:O75643 ChiTaRS:SNRNP200 EvolutionaryTrace:O75643
GenomeRNAi:23020 NextBio:43966 ArrayExpress:O75643 Bgee:O75643
CleanEx:HS_SNRNP200 Genevestigator:O75643
GermOnline:ENSG00000144028 Uniprot:O75643
Length = 2136
Score = 117 (46.2 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 43/164 (26%), Positives = 76/164 (46%)
Query: 11 HGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK---- 66
+GWL PA+ +EL+Q + QA + S+ + QLPHFT IK+ K
Sbjct: 1933 NGWLSPALAAMELAQMVTQA--MWSKDSY---------LKQLPHFTSEHIKRCTDKGVES 1981
Query: 67 --ELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLXXXXXXXXXXXXXIQEGDIV 124
++ +M ++R LL + +++ DV P++ I+ G V
Sbjct: 1982 VFDIMEMEDEERNALLQ----LTDSQIADVARFCNRYPNIELSYEVVDKDS--IRSGGPV 2035
Query: 125 TIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNV 168
+ V L+R + G + AP +P +EE +W ++ D+ SN++
Sbjct: 2036 VVL--VQLEREEEVTGPVI-APLFPQKREEGWWVVIGDAKSNSL 2076
Score = 72 (30.4 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 228 APAEGNYNLTCYCLCDSWLGCDKRTNLKVKI 258
APA G +N T Y + D+++GCD+ V +
Sbjct: 2096 APATGAHNYTLYFMSDAYMGCDQEYKFSVDV 2126
>UNIPROTKB|E1BH78 [details] [associations]
symbol:LOC100850262 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005682 "U5
snRNP" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0008380 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973
GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR GO:GO:0008026
CTD:23020 EMBL:DAAA02030116 IPI:IPI00695338 RefSeq:NP_001193092.1
UniGene:Bt.7486 ProteinModelPortal:E1BH78 PRIDE:E1BH78
Ensembl:ENSBTAT00000001130 GeneID:510529 KEGG:bta:510529
NextBio:20869492 Uniprot:E1BH78
Length = 2136
Score = 116 (45.9 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 44/164 (26%), Positives = 75/164 (45%)
Query: 11 HGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK---- 66
+GWL PA+ +EL+Q QA + S+ + QLPHFT IK+ K
Sbjct: 1933 NGWLSPALAAMELAQMATQA--MWSKDSY---------LKQLPHFTSEHIKRCTDKGVES 1981
Query: 67 --ELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLXXXXXXXXXXXXXIQEGDIV 124
++ +M ++R LL S +++ DV P++ I+ G V
Sbjct: 1982 VFDIMEMEDEERNALLQ----LSDSQIADVARFCNRYPNIELSYEVVDKDA--IRSGGPV 2035
Query: 125 TIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNV 168
+ V L+R + G + AP +P +EE +W ++ D+ SN++
Sbjct: 2036 VVL--VQLEREEEVTGPVI-APLFPQKREEGWWVVIGDAKSNSL 2076
Score = 72 (30.4 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 228 APAEGNYNLTCYCLCDSWLGCDKRTNLKVKI 258
APA G +N T Y + D+++GCD+ V +
Sbjct: 2096 APATGAHNYTLYFMSDAYMGCDQEYKFSVDV 2126
>DICTYBASE|DDB_G0270042 [details] [associations]
symbol:ascc3l "U5 small nuclear ribonucleoprotein 200
kDa helicase" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 dictyBase:DDB_G0270042 GO:GO:0005524
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0008380
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 KO:K12854 OMA:KWDVLSR GO:GO:0008026
RefSeq:XP_646493.1 ProteinModelPortal:Q55CI8 STRING:Q55CI8
EnsemblProtists:DDB0233131 GeneID:8617455 KEGG:ddi:DDB_G0270042
InParanoid:Q55CI8 ProtClustDB:CLSZ2431432 Uniprot:Q55CI8
Length = 2237
Score = 110 (43.8 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 44/180 (24%), Positives = 75/180 (41%)
Query: 11 HGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARKELRD 70
+ WL+PA+ +ELSQ I QA+ + + F QLPH + I I + +
Sbjct: 2013 NSWLQPAIAAMELSQMITQAM-----------WDSDSVFKQLPHMNKRRIDAITSQGIES 2061
Query: 71 ----MSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLXXXXXXXXXXXXXIQEGDIVTI 126
MSL D + + Q+ S E D+ P + + I+T+
Sbjct: 2062 VFDLMSLDDNSRI--QLLDLSQQESNDLVQSFMKYPDIDISYQVQDEDD--LHADSIMTV 2117
Query: 127 QAWVTLKRG---------NGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFM 177
+ + G N I + APYYP K +W L+ DS +N++ ++++F+
Sbjct: 2118 EMVIERDLGDDEENPIEINDSINVVS-APYYPKEKICGWWALIGDSKNNHLLAIKRITFL 2176
Score = 70 (29.7 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 229 PAEGNYNLTCYCLCDSWLGCDKRTNLKVKIL 259
PA G + L+ Y DS+ GCD+ L + IL
Sbjct: 2188 PAVGKHQLSLYLFSDSYNGCDQEHELNINIL 2218
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.130 0.375 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 336 292 0.00090 115 3 11 23 0.43 34
33 0.44 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 13
No. of states in DFA: 607 (65 KB)
Total size of DFA: 193 KB (2109 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.71u 0.09s 21.80t Elapsed: 00:00:01
Total cpu time: 21.71u 0.09s 21.80t Elapsed: 00:00:01
Start: Fri May 10 05:26:10 2013 End: Fri May 10 05:26:11 2013