BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019751
(336 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex subunit 3-like
OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1
Length = 2237
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 106/263 (40%), Gaps = 69/263 (26%)
Query: 10 GHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARKELR 69
+ WL+PA+ +ELSQ I QA+ + + F QLPH + I I + +
Sbjct: 2012 SNSWLQPAIAAMELSQMITQAM-----------WDSDSVFKQLPHMNKRRIDAITSQGIE 2060
Query: 70 D----MSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVT 125
MSL D + + Q+ S E D +V M ++++ + + E+ + I+T
Sbjct: 2061 SVFDLMSLDDNSRI--QLLDLSQQESND--LVQSFMKYPDIDISYQVQDEDDLHADSIMT 2116
Query: 126 IQAWVTLKRG---------NGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSF 176
++ + G N I + APYYP K +W L+ DS +N++ ++++F
Sbjct: 2117 VEMVIERDLGDDEENPIEINDSINVV-SAPYYPKEKICGWWALIGDSKNNHLLAIKRITF 2175
Query: 177 MDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNL 236
+ K+T V + PA G + L
Sbjct: 2176 L------------------------KKTK----------------VKFEFPTPAVGKHQL 2195
Query: 237 TCYCLCDSWLGCDKRTNLKVKIL 259
+ Y DS+ GCD+ L + IL
Sbjct: 2196 SLYLFSDSYNGCDQEHELNINIL 2218
>sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4
Length = 2142
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 107/255 (41%), Gaps = 66/255 (25%)
Query: 10 GHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK--- 66
+GWL PAV +EL+Q + QA+ + QLPHF+ ++K+ K
Sbjct: 1936 SNGWLSPAVAAMELAQMVTQAM-----------WSKDSYLKQLPHFSPEIVKRCTEKKIE 1984
Query: 67 ---ELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDI 123
++ ++ +DR LL S ++ DV P+ +E+ E ++ I G
Sbjct: 1985 TVFDIMELEDEDRTRLLQ----LSDLQMADVARFCNRYPN--IELNYEVVDKDRINSGS- 2037
Query: 124 VTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEPAAI 183
T+ V L+R + + G + AP++P +EE +W ++ D +N++ ++++ +
Sbjct: 2038 -TVNVVVQLEREDEVTGPVI-APFFPQKREEGWWVVIGDPKTNSLLSIKRLTLQQK---- 2091
Query: 184 TAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNLTCYCLCD 243
A VK AP+ G ++ T Y + D
Sbjct: 2092 ---------------AKVKLDFV---------------------APSPGKHDYTLYYMSD 2115
Query: 244 SWLGCDKRTNLKVKI 258
S+LGCD+ +++
Sbjct: 2116 SYLGCDQEYKFSIEV 2130
>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens
GN=SNRNP200 PE=1 SV=2
Length = 2136
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 107/255 (41%), Gaps = 66/255 (25%)
Query: 10 GHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK--- 66
+GWL PA+ +EL+Q + QA+ + QLPHFT IK+ K
Sbjct: 1932 SNGWLSPALAAMELAQMVTQAM-----------WSKDSYLKQLPHFTSEHIKRCTDKGVE 1980
Query: 67 ---ELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDI 123
++ +M ++R LL + +++ DV P+ +E++ E ++ I+ G
Sbjct: 1981 SVFDIMEMEDEERNALLQ----LTDSQIADVARFCNRYPN--IELSYEVVDKDSIRSGGP 2034
Query: 124 VTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEPAAI 183
V + V L+R + G + AP +P +EE +W ++ D+ SN++ ++++ +
Sbjct: 2035 VVV--LVQLEREEEVTGPVI-APLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQK---- 2087
Query: 184 TAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNLTCYCLCD 243
A VK APA G +N T Y + D
Sbjct: 2088 ---------------AKVKLDFV---------------------APATGAHNYTLYFMSD 2111
Query: 244 SWLGCDKRTNLKVKI 258
+++GCD+ V +
Sbjct: 2112 AYMGCDQEYKFSVDV 2126
>sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1
Length = 2145
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 109/263 (41%), Gaps = 79/263 (30%)
Query: 10 GHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFL-QLPHFTEAVIKKIARK-- 66
+GWL PA+ +ELSQ + QA+ P+L QLPH + A++++ K
Sbjct: 1931 SNGWLSPAIHAMELSQMLTQAM------------YSNEPYLKQLPHCSAALLERAKAKEV 1978
Query: 67 ----ELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGD 122
EL ++ DR+++L G E+ DV PS +EV E E D
Sbjct: 1979 TSVFELLELENDDRSDILQMEGA----ELADVARFCNHYPS--IEVATEL-------END 2025
Query: 123 IVT----IQAWVTLKRGNGLIGALPH--APYYP-FHKEENFWFLLADSVSNNVWFSQKVS 175
+VT + V+L+R N + G P AP +P KEE +W ++ DS SN + +++
Sbjct: 2026 VVTSNDNLMLAVSLERDNDIDGLAPPVVAPLFPQKRKEEGWWLVIGDSESNALLTIKRL- 2084
Query: 176 FMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYN 235
+ E S+ + A AP G++
Sbjct: 2085 ------------------------VINEKSSVQLDFA---------------APRPGHHK 2105
Query: 236 LTCYCLCDSWLGCDKRTNLKVKI 258
+ + DS+LG D+ ++ K+
Sbjct: 2106 FKLFFISDSYLGADQEFDVAFKV 2128
>sp|Q9UT24|BRR2_SCHPO Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=brr2 PE=1 SV=1
Length = 2176
Score = 36.2 bits (82), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 54/178 (30%)
Query: 7 TAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK 66
T G L + +E+SQ + QA+ + +P Q+P+F +A+I++ ++
Sbjct: 1965 TLSSEGHLIACIRPMEMSQMVTQAL-----------WDRDSPLKQIPYFDDALIERCNKE 2013
Query: 67 ------ELRDMSLQDRAELL-------SQVGGFSST--------EVQDVEMVLQMMPS-L 104
++ D+ + R ELL ++ F + E++D E V PS L
Sbjct: 2014 GVHDVFDIIDLDDEKRTELLHMDNAHLAKCAEFINKYPDIDIDFEIEDSEDVHANSPSVL 2073
Query: 105 TVEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLAD 162
V++T E E +E E D I APY+P K E++W +++D
Sbjct: 2074 IVQLTRELEEDE---EVDTTVI------------------APYFPAQKTEHWWLVISD 2110
>sp|Q9UGP8|SEC63_HUMAN Translocation protein SEC63 homolog OS=Homo sapiens GN=SEC63 PE=1
SV=2
Length = 760
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 35 SRKATGGSTEGTAPFLQLPHFTEAVIKKIA-RKELRDMSLQDRAEL-----LSQVGGFSS 88
S+ A G + +P LQLPH E +++++ K+ + ++QD L + +
Sbjct: 370 SQMAVQGLQQFKSPLLQLPHIEEDNLRRVSNHKKYKIKTIQDLVSLKESDRHTLLHFLED 429
Query: 89 TEVQDVEMVLQMMPSLTVEVTCET---EGEEGIQEGDIVTI 126
+ ++V VL P +T+++ + E I G +VT+
Sbjct: 430 EKYEEVMAVLGSFPYVTMDIKSQVLDDEDSNNITVGSLVTV 470
>sp|Q5R660|SEC63_PONAB Translocation protein SEC63 homolog OS=Pongo abelii GN=SEC63 PE=2
SV=1
Length = 761
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 35 SRKATGGSTEGTAPFLQLPHFTEAVIKKIA-RKELRDMSLQDRAEL-----LSQVGGFSS 88
S+ A G + +P LQLPH E +++++ K+ + ++QD L + +
Sbjct: 370 SQMAVQGLQQFKSPLLQLPHIEEDNLRRVSNHKKYKIKTIQDLVSLKESDRHTLLHFLED 429
Query: 89 TEVQDVEMVLQMMPSLTVEVTCET---EGEEGIQEGDIVTI 126
+ ++V VL P +T+++ + E I G +VT+
Sbjct: 430 EKYEEVMAVLGSFPYVTMDIKSQVLDDEDSNNITVGSLVTV 470
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.128 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,477,739
Number of Sequences: 539616
Number of extensions: 5502806
Number of successful extensions: 74835
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 440
Number of HSP's that attempted gapping in prelim test: 47253
Number of HSP's gapped (non-prelim): 14985
length of query: 336
length of database: 191,569,459
effective HSP length: 118
effective length of query: 218
effective length of database: 127,894,771
effective search space: 27881060078
effective search space used: 27881060078
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)