Query 019751
Match_columns 336
No_of_seqs 173 out of 700
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 04:15:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019751.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019751hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4434 Molecular chaperone SE 100.0 5.9E-41 1.3E-45 322.5 18.6 231 14-308 129-519 (520)
2 smart00611 SEC63 Domain of unk 100.0 1.2E-32 2.6E-37 263.6 21.9 185 6-257 121-312 (312)
3 PF02889 Sec63: Sec63 Brl doma 100.0 3.6E-32 7.8E-37 260.0 19.2 188 6-256 118-314 (314)
4 COG5407 SEC63 Preprotein trans 99.8 3E-20 6.6E-25 183.7 11.0 160 5-178 303-502 (610)
5 KOG0951 RNA helicase BRR2, DEA 99.7 4E-20 8.8E-25 199.0 -4.5 329 1-334 118-476 (1674)
6 KOG0951 RNA helicase BRR2, DEA 99.6 6.5E-14 1.4E-18 151.8 16.7 212 6-303 922-1144(1674)
7 KOG0952 DNA/RNA helicase MER3/ 98.0 1.3E-05 2.7E-10 87.5 8.6 181 7-262 713-896 (1230)
8 PRK01172 ski2-like helicase; P 97.9 1.1E-05 2.4E-10 85.7 5.0 80 7-101 570-668 (674)
9 PRK02362 ski2-like helicase; P 97.4 0.00017 3.7E-09 77.7 5.3 76 9-101 625-706 (737)
10 PRK00254 ski2-like helicase; P 96.9 0.0011 2.5E-08 71.1 5.5 73 11-101 623-701 (720)
11 KOG1824 TATA-binding protein-i 86.2 0.35 7.5E-06 53.5 1.5 18 289-306 327-344 (1233)
12 PF15243 ANAPC15: Anaphase-pro 84.9 0.67 1.4E-05 37.8 2.2 42 268-309 49-90 (92)
13 PF09026 CENP-B_dimeris: Centr 83.5 0.35 7.6E-06 39.7 0.0 8 279-286 13-20 (101)
14 PF06524 NOA36: NOA36 protein; 81.4 1.1 2.5E-05 42.9 2.6 9 95-103 57-65 (314)
15 PF01835 A2M_N: MG2 domain; I 78.9 30 0.00064 27.2 11.2 46 117-174 10-55 (99)
16 PF06524 NOA36: NOA36 protein; 78.0 1.6 3.5E-05 41.9 2.4 7 143-149 116-122 (314)
17 PF10446 DUF2457: Protein of u 71.9 3.6 7.7E-05 42.3 3.2 10 244-253 14-23 (458)
18 PF13897 GOLD_2: Golgi-dynamic 65.5 33 0.00072 29.9 7.4 36 224-263 7-44 (136)
19 KOG1834 Calsyntenin [Extracell 65.4 5.9 0.00013 42.7 3.4 10 237-246 831-840 (952)
20 PF06051 DUF928: Domain of Unk 59.3 32 0.0007 31.3 6.7 33 230-262 88-122 (189)
21 KOG1189 Global transcriptional 58.5 7.2 0.00016 42.7 2.6 13 165-177 785-797 (960)
22 PF03066 Nucleoplasmin: Nucleo 58.2 3.3 7.1E-05 36.5 0.0 13 165-177 28-40 (149)
23 PF14520 HHH_5: Helix-hairpin- 57.8 11 0.00025 27.4 2.8 48 48-99 6-59 (60)
24 KOG3540 Beta amyloid precursor 55.6 9 0.00019 39.9 2.6 21 156-176 117-137 (615)
25 PF07495 Y_Y_Y: Y_Y_Y domain; 52.7 42 0.0009 24.2 5.2 35 224-259 31-66 (66)
26 PF04281 Tom22: Mitochondrial 49.4 10 0.00022 33.1 1.7 18 290-307 31-48 (137)
27 KOG1189 Global transcriptional 44.2 13 0.00028 40.8 1.7 6 224-229 741-746 (960)
28 PF00868 Transglut_N: Transglu 42.8 72 0.0016 26.7 5.8 21 222-242 95-118 (118)
29 KOG1834 Calsyntenin [Extracell 40.0 22 0.00048 38.6 2.6 9 25-33 484-492 (952)
30 PF04147 Nop14: Nop14-like fam 37.5 28 0.00061 38.8 3.1 6 67-72 104-109 (840)
31 KOG3064 RNA-binding nuclear pr 36.5 21 0.00045 34.5 1.7 11 235-245 165-175 (303)
32 PF13543 KSR1-SAM: SAM like do 35.8 1.1E+02 0.0023 26.6 5.7 55 46-101 60-128 (129)
33 PF00386 C1q: C1q domain; Int 34.0 70 0.0015 26.4 4.3 18 224-241 37-54 (127)
34 COG1470 Predicted membrane pro 32.9 96 0.0021 32.5 5.8 43 218-263 442-487 (513)
35 PF14686 fn3_3: Polysaccharide 31.9 74 0.0016 25.7 4.0 33 225-259 51-85 (95)
36 COG1470 Predicted membrane pro 30.6 1.1E+02 0.0024 32.1 5.8 41 219-261 334-377 (513)
37 PRK04301 radA DNA repair and r 30.4 88 0.0019 30.3 5.0 51 46-100 5-61 (317)
38 PF14524 Wzt_C: Wzt C-terminal 29.8 82 0.0018 25.6 4.1 42 219-260 85-130 (142)
39 PF04147 Nop14: Nop14-like fam 29.6 37 0.0008 37.8 2.5 6 241-246 317-322 (840)
40 cd00146 PKD polycystic kidney 28.9 1.4E+02 0.003 22.2 4.9 32 225-258 50-81 (81)
41 PF04151 PPC: Bacterial pre-pe 28.8 51 0.0011 24.4 2.4 18 222-239 52-69 (70)
42 PF03115 Astro_capsid: Astrovi 27.7 20 0.00043 39.6 0.0 21 35-55 353-373 (787)
43 KOG2393 Transcription initiati 27.0 31 0.00067 36.4 1.2 30 278-307 280-310 (555)
44 KOG3130 Uncharacterized conser 26.7 39 0.00084 34.7 1.8 36 89-127 97-133 (514)
45 PF14821 Thr_synth_N: Threonin 26.6 88 0.0019 24.3 3.5 62 21-96 12-76 (79)
46 PRK14606 ruvA Holliday junctio 26.2 2.6E+02 0.0055 25.5 6.9 52 45-98 106-167 (188)
47 KOG2051 Nonsense-mediated mRNA 25.4 58 0.0012 37.2 2.9 16 295-310 909-924 (1128)
48 PRK13901 ruvA Holliday junctio 25.3 2.2E+02 0.0048 26.3 6.3 52 45-98 105-168 (196)
49 TIGR00596 rad1 DNA repair prot 24.7 1.1E+02 0.0023 34.3 4.9 48 48-100 758-810 (814)
50 PF11705 RNA_pol_3_Rpc31: DNA- 23.5 39 0.00086 31.5 1.1 40 270-309 167-206 (233)
51 KOG2141 Protein involved in hi 23.5 37 0.0008 37.2 1.0 10 278-287 209-218 (822)
52 KOG3241 Uncharacterized conser 23.5 50 0.0011 30.3 1.7 24 279-302 193-216 (227)
53 COG5406 Nucleosome binding fac 23.4 60 0.0013 35.3 2.5 28 222-249 793-826 (1001)
54 COG5407 SEC63 Preprotein trans 23.1 70 0.0015 33.5 2.9 39 224-262 512-551 (610)
55 PTZ00035 Rad51 protein; Provis 21.5 1.6E+02 0.0035 29.1 5.0 52 48-103 22-81 (337)
56 KOG3540 Beta amyloid precursor 21.5 50 0.0011 34.6 1.5 16 234-249 170-185 (615)
57 PHA02608 67 prohead core prote 21.2 50 0.0011 26.2 1.1 9 271-279 43-51 (80)
58 TIGR02236 recomb_radA DNA repa 21.2 1.8E+02 0.0038 27.9 5.1 47 49-99 1-53 (310)
59 KOG0699 Serine/threonine prote 20.9 55 0.0012 33.4 1.6 41 272-312 257-300 (542)
No 1
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-41 Score=322.52 Aligned_cols=231 Identities=32% Similarity=0.530 Sum_probs=198.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCcccCCCCCHHHHHHHhhH-------HhhcCCHHHHHHHHhhccCC
Q 019751 14 LRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK-------ELRDMSLQDRAELLSQVGGF 86 (336)
Q Consensus 14 L~~al~~m~L~Q~IvQA~W~~~~~~~~~~~~~~spLlQLPh~~~e~v~kl~~k-------~L~~~~~~er~~lL~~~~gl 86 (336)
+.+.-+||.|++|+|||+|. ..||||||||++++.+.++.++ +|..|..+.|+.||+. +
T Consensus 129 iet~eNcmKlspM~vQgLwq-----------fkSPLLQLPHitednL~~~~KKr~vks~qdla~lk~e~rr~lL~~---L 194 (520)
T KOG4434|consen 129 IETFENCMKLSPMFVQGLWQ-----------FKSPLLQLPHITEDNLQHLRKKRKVKSCQDLAVLKAETRRSLLRS---L 194 (520)
T ss_pred HHHHHHHHhccHHHHHHHHH-----------hcChhhcCCccchHHHHHHhhhcccccHHHHhhcCHHHHHHHHHh---c
Confidence 67788999999999999999 8999999999999999888765 7888999999999997 8
Q ss_pred ChHHHHHHHHHHhcCCceeEEEEEEecCCc---cccCCCeEEEEEeeeeecc----------------------------
Q 019751 87 SSTEVQDVEMVLQMMPSLTVEVTCETEGEE---GIQEGDIVTIQAWVTLKRG---------------------------- 135 (336)
Q Consensus 87 s~~q~~~v~~v~~~lP~I~v~~~~~V~ge~---~It~g~~vtl~~~V~L~R~---------------------------- 135 (336)
++.++.+++.|+.+||.|.+++.+.|.|++ .||+|.+||+. |+|+|.
T Consensus 195 sdeeYe~vM~VLg~mP~~~~~ik~~V~dded~n~~TaG~vVTv~--Vtl~R~~l~d~~e~~~~d~~k~paedG~~de~n~ 272 (520)
T KOG4434|consen 195 SDEEYEDVMVVLGMMPRLQIEIKTVVEDDEDKNELTAGCVVTVK--VTLRRSRLIDPQEAGLADQYKKPAEDGGDDENNL 272 (520)
T ss_pred chHHHHHHHHHHccCcceEEEeeEEEecCCcccceeeeeEEEEE--EEEEeccccChHhhhhhhhhhCchhhCCCcccch
Confidence 999999999999999999999999998865 59999999999 888873
Q ss_pred --------------------------------------------------------------------------C-----
Q 019751 136 --------------------------------------------------------------------------N----- 136 (336)
Q Consensus 136 --------------------------------------------------------------------------n----- 136 (336)
|
T Consensus 273 ea~g~~~eaaa~~~~~~vKK~kpw~K~Kpk~~kkpaq~Q~~qK~v~~~aas~at~ka~eeea~~~~sD~E~e~~n~Ds~d 352 (520)
T KOG4434|consen 273 EASGAPEEAAATVEEEEVKKRKPWEKNKPKQKKKPAQGQGQQKFVKKNAASPATEKALEEEAKDKGSDSEEEETNRDSQD 352 (520)
T ss_pred hccCChhhhccccchhhhhhcCchhhcCCCcccCccccchhhhhcccccCChhhhhhhHHHhhhcCcchhhhhhcccccc
Confidence 0
Q ss_pred ------------------------------------------CCCCCCccCCCCCCCCcccEEEEEEECCCCeEEEEeee
Q 019751 137 ------------------------------------------GLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKV 174 (336)
Q Consensus 137 ------------------------------------------~~~~~~v~aP~FP~~K~E~WwvvlgD~~~n~Ll~~krv 174 (336)
......+||||||-.|.|.||+.|.|.++..||.+...
T Consensus 353 ees~asd~~~D~e~~~~~ddddd~EWe~lqa~~~kr~~lEtKs~~tHtVh~pyFPeEKqEwWW~Yi~drKsrtLlt~Pyh 432 (520)
T KOG4434|consen 353 EESDASDRDSDREQDEKQDDDDDAEWEELQASIQKRALLETKSKITHTVHSPYFPEEKQEWWWLYIADRKSRTLLTMPYH 432 (520)
T ss_pred cccccCccccchhhccccccccHHHHHHHHHHHHHHHhhhcccccceeeccCCCcchhhheeeeeeecccccceecchhh
Confidence 01244699999999999999999999999998875432
Q ss_pred eeccchhHHhhhhhhhhhhhcCCCCccchhhHHHHHHHhhhhcCceeEEEEEEcC-CCCceeEEEEEEcCCCcccceEEE
Q 019751 175 SFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAP-AEGNYNLTCYCLCDSWLGCDKRTN 253 (336)
Q Consensus 175 ~~~~~~~~~~~~~k~i~~~~~~~g~~~k~~~~~~~~~~~~~k~~~~~v~l~F~aP-~~G~~~l~l~viSDsYiG~D~~~~ 253 (336)
|.+++ ....|.|+|++| .||.|+|+|++.||||+|+||..+
T Consensus 433 -------------------------------------V~tL~-d~eei~lkF~AP~~pG~Ytytv~lrSDSYmg~dq~~~ 474 (520)
T KOG4434|consen 433 -------------------------------------VCTLK-DTEEIELKFPAPGKPGNYTYTVFLRSDSYMGLDQIKP 474 (520)
T ss_pred -------------------------------------hhccc-ccceeEEeccCCCCCCceEEEEEEecccccChhhccc
Confidence 12232 345789999999 899999999999999999999999
Q ss_pred EEEEeeccCccCccccccccCCCCccCCCCCcccccccccCCcCCcccccchhhh
Q 019751 254 LKVKILKRTRAGTRGGIVSEEGPIVEDGAEEEEEDEEEEYDDYESEYSEDEEDER 308 (336)
Q Consensus 254 i~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 308 (336)
++|.|.+++. |++++|.+++.|+++|+-++.| .=++|++|++++.
T Consensus 475 lKldV~eAk~-------vp~~Hpqwd~~~~e~e~~~~~e---~~~Dyted~~~eE 519 (520)
T KOG4434|consen 475 LKLDVHEAKP-------VPENHPQWDTAIEEDEDQEDSE---GFEDYTEDEEEEE 519 (520)
T ss_pred eeeeeccCCC-------CCCCCccccccccccccccccc---ccccccccccccc
Confidence 9999999987 9999999999999888776443 3456777666553
No 2
>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins.
Probab=100.00 E-value=1.2e-32 Score=263.62 Aligned_cols=185 Identities=34% Similarity=0.536 Sum_probs=157.0
Q ss_pred chhhccCCHHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCcccCCCCCHHHHHHHhhH------HhhcCCHHHHHHH
Q 019751 6 RTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK------ELRDMSLQDRAEL 79 (336)
Q Consensus 6 ~~aa~~GwL~~al~~m~L~Q~IvQA~W~~~~~~~~~~~~~~spLlQLPh~~~e~v~kl~~k------~L~~~~~~er~~l 79 (336)
..++.+||+++++++|+|+|||+||+|+ ..+||+|||||+.+.++++..+ +|.+++.++++.+
T Consensus 121 di~~~~~~~~~~~~~l~L~q~i~q~~w~-----------~~~~L~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~l 189 (312)
T smart00611 121 DIALERGWLSTALNALNLSQMIIQALWP-----------TDSPLLQLPHLPEEILKRLEKKKVLSLEDLLELEDEERGEL 189 (312)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhhCC-----------CCCccccCCCCCHHHHHHHHhCCCCCHHHHHhcCHHHHHHH
Confidence 4678899999999999999999999999 7899999999999999988863 8899999999998
Q ss_pred HhhccCCChHHHHHHHHHHhcCCceeEEEEEEecCCccccCCCeEEEEEeeeeeccCCCCCCCccCCCCCCCCcccEEEE
Q 019751 80 LSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFL 159 (336)
Q Consensus 80 L~~~~gls~~q~~~v~~v~~~lP~I~v~~~~~V~ge~~It~g~~vtl~~~V~L~R~n~~~~~~v~aP~FP~~K~E~Wwvv 159 (336)
++ +.+.+++++.+++++||+|+|++++ .+...+..+..++|+ +.++|.+ .+| .|.|+||++
T Consensus 190 l~----~~~~~~~~i~~~~~~~P~l~v~~~~--~~~~~~~~~~~~~i~--~~~~~~~-----~~~------~k~e~~~l~ 250 (312)
T smart00611 190 LG----LLDAEGERVYKVLSRLPKLNIEISL--EPITRTVLGVEVTLT--VDLTWDD-----EIH------GKQEGWWLV 250 (312)
T ss_pred Hc----CCHHHHHHHHHHHHhCCcceeEEEE--cCCcccccCceEEEE--EEEEEcc-----ccc------CCcccEEEE
Confidence 76 7779999999999999999987654 444445566677777 7777642 122 689999999
Q ss_pred EEECCCCeEEEEeeeeeccchhHHhhhhhhhhhhhcCCCCccchhhHHHHHHHhhhhcCceeEEEEEEcC-CCCceeEEE
Q 019751 160 LADSVSNNVWFSQKVSFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAP-AEGNYNLTC 238 (336)
Q Consensus 160 lgD~~~n~Ll~~krv~~~~~~~~~~~~~k~i~~~~~~~g~~~k~~~~~~~~~~~~~k~~~~~v~l~F~aP-~~G~~~l~l 238 (336)
|+|+++|+|++++|++++... ..+.+.+.|.+| .+|.|+|+|
T Consensus 251 v~d~~~~~il~~~~~~~~~~~-------------------------------------~~~~~~l~f~~P~~~~~~~~~v 293 (312)
T smart00611 251 IGDSDGNELLHIERFSLNKKN-------------------------------------VSEEVKLDFTAPATEGNYQYTL 293 (312)
T ss_pred EEeCCCCEEEEEEEEEEEeec-------------------------------------CCCcEEEEEEecCCCCcceEEE
Confidence 999999999999999986521 012467899999 589999999
Q ss_pred EEEcCCCcccceEEEEEEE
Q 019751 239 YCLCDSWLGCDKRTNLKVK 257 (336)
Q Consensus 239 ~viSDsYiG~D~~~~i~l~ 257 (336)
+++||+|+|||++++++|+
T Consensus 294 ~v~SD~y~g~d~~~~i~~~ 312 (312)
T smart00611 294 RLVSDSYLGCDQEYPLSFD 312 (312)
T ss_pred EEEecccCCcceEEEEeeC
Confidence 9999999999999999874
No 3
>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found. This protein is required for assembly of functional endoplasmic reticulum translocons [, ]. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. ; PDB: 3IM2_A 3IM1_A 3HIB_A 2Q0Z_X.
Probab=100.00 E-value=3.6e-32 Score=259.98 Aligned_cols=188 Identities=30% Similarity=0.534 Sum_probs=140.2
Q ss_pred chhhccCCHHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCcccCCCCCHHHHHHHhhH------HhhcCCHHHHHHH
Q 019751 6 RTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK------ELRDMSLQDRAEL 79 (336)
Q Consensus 6 ~~aa~~GwL~~al~~m~L~Q~IvQA~W~~~~~~~~~~~~~~spLlQLPh~~~e~v~kl~~k------~L~~~~~~er~~l 79 (336)
..|+.+||+++++++|+|+|||+||+|+ ..+||+|||||+++.++++..+ +|.++++.++..+
T Consensus 118 ei~~~~~~~~~~~~~l~l~q~i~q~~w~-----------~~~~L~Qlp~i~~~~~~~l~~~~i~~l~~l~~~~~~e~~~l 186 (314)
T PF02889_consen 118 EIALEKGWLSTALNALELSQCIVQALWD-----------SDSPLLQLPHIGEESLKKLEKRGIKTLQDLRDLSPEELEEL 186 (314)
T ss_dssp HHHHHTTBCCHHHHHHHHHHHHHHTS-T-----------TS-GGGGSTT--HHHHHHHHHTT--SHHHHHHS-HHHHHHH
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhhcCC-----------CCChhhcCCCCCHHHHHHHhccCCCcHHHHhhCCHHHHHHH
Confidence 4578999999999999999999999997 6899999999999999998876 8899999999999
Q ss_pred HhhccCCChHHHHHHHHHHhcCCceeEEEEEEecCCccccCCCeEEEEEeeeeeccCCCCCCCccCCCCCCCCcccEEEE
Q 019751 80 LSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFL 159 (336)
Q Consensus 80 L~~~~gls~~q~~~v~~v~~~lP~I~v~~~~~V~ge~~It~g~~vtl~~~V~L~R~n~~~~~~v~aP~FP~~K~E~Wwvv 159 (336)
|+ ..+.+++++.+++++||.++|++++++.+++.+ ..++|. |.++|.+ .+.++||+.|.++||++
T Consensus 187 l~----~~~~~~~~i~~~~~~~P~~~i~~~~~~~~~~~~---~~~~v~--v~i~~~~------~~~~~~~~~k~~~~~~~ 251 (314)
T PF02889_consen 187 LN----RNPPFGKEILEVASRIPRLEIKASVQVIDEEIV---PILTVQ--VSITRKF------SWSDRFPKKKKESWWLF 251 (314)
T ss_dssp H-----S-HHHHHHHHHHHCCS--EEEEEEETTCCGEEC---SEEEEE--EEEEESS------S-SST-SS--B--EEEE
T ss_pred Hh----hhhhhHHHHHHHHHHCCCEEEEEEEeccccccC---CcEEEE--EEEEccc------ccccCCCCCCcccEEEE
Confidence 87 467999999999999999999988877665422 357777 8888753 34569999999999999
Q ss_pred EEECCCCeEEEEeeeeeccchhHHhhhhhhhhhhhcCCCCccchhhHHHHHHHhhhhcCceeEEEEEEcCC-CCc--eeE
Q 019751 160 LADSVSNNVWFSQKVSFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPA-EGN--YNL 236 (336)
Q Consensus 160 lgD~~~n~Ll~~krv~~~~~~~~~~~~~k~i~~~~~~~g~~~k~~~~~~~~~~~~~k~~~~~v~l~F~aP~-~G~--~~l 236 (336)
|+|.++|+|++++|+.+..+. ......++|++|. +|+ ++|
T Consensus 252 v~~~~~~~l~~~~~~~~~~~~-------------------------------------~~~~~~~~f~vp~~~~~~~~~~ 294 (314)
T PF02889_consen 252 VGDSKNNELLHFERITISKKK-------------------------------------SKDTVKISFQVPIPVGPRPYQY 294 (314)
T ss_dssp EEECCCTEEEEEEEE---SS---------------------------------------EEEEEEEEE--SS-EE--EEE
T ss_pred EEECCCCeEEEEeeeehhhhc-------------------------------------cCCcEEEEEEecCCCCCCCceE
Confidence 999999999999999873200 0124668999994 476 999
Q ss_pred EEEEEcCCCcccceEEEEEE
Q 019751 237 TCYCLCDSWLGCDKRTNLKV 256 (336)
Q Consensus 237 ~l~viSDsYiG~D~~~~i~l 256 (336)
+++++||+|+|+|+.++|+|
T Consensus 295 ~v~v~sd~y~G~d~~~~i~~ 314 (314)
T PF02889_consen 295 TVYVISDSYLGLDQEVPINF 314 (314)
T ss_dssp EEEEEESS-SS--EEEEEEE
T ss_pred EEEEEECCccccceEEEeeC
Confidence 99999999999999999986
No 4
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.82 E-value=3e-20 Score=183.67 Aligned_cols=160 Identities=16% Similarity=0.152 Sum_probs=136.7
Q ss_pred cchhhccCCHHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCcccCCCCCHHHHHHHhhH------HhhcCCHHHHHH
Q 019751 5 PRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK------ELRDMSLQDRAE 78 (336)
Q Consensus 5 ~~~aa~~GwL~~al~~m~L~Q~IvQA~W~~~~~~~~~~~~~~spLlQLPh~~~e~v~kl~~k------~L~~~~~~er~~ 78 (336)
-|+|+++|++.++.+.+.+-||||||++.. ..-+++||||++.+.++.+.-+ .|+.+..+..+.
T Consensus 303 L~ia~~F~f~~~~~g~~n~~q~iVqAiPld----------~~f~ilQlp~~d~E~~~~~s~r~I~~~~~~~sL~~~~~g~ 372 (610)
T COG5407 303 LRIASNFAFPLKECGKENKGQYIVQAIPLD----------HLFRILQLPRSDVEYAQRVSLRLIEGMKAIGSLIAKRYGN 372 (610)
T ss_pred HHHHhhccCCchhhccchhhheeeEeccCC----------CCchhhcccchhHHHHHHhhhhhhhhhhhHhhHHHHHHhh
Confidence 489999999999999999999999999993 6789999999998877766543 778888888899
Q ss_pred HHhhccCCChHHHHHHHHHHhcCCcee-EEEEEEecCCccccCCCeEEEEEeeeeecc-------------C--------
Q 019751 79 LLSQVGGFSSTEVQDVEMVLQMMPSLT-VEVTCETEGEEGIQEGDIVTIQAWVTLKRG-------------N-------- 136 (336)
Q Consensus 79 lL~~~~gls~~q~~~v~~v~~~lP~I~-v~~~~~V~ge~~It~g~~vtl~~~V~L~R~-------------n-------- 136 (336)
.|.+ ++..++.++.++++++|++. |.+.|-|.++..||++++..+.+++.+... |
T Consensus 373 vl~n---~~~~~l~e~~~va~gIPr~~~~~a~flv~~d~~it~~s~~~vslk~~~g~~~~pe~~ts~~~~~n~~e~~dfe 449 (610)
T COG5407 373 VLKN---LVVLELMEIQAVADGIPRYFLLQAPFLVFEDLFITEKSKERVSLKGYLGAIPGPEHRTSALNVYNQVEISDFE 449 (610)
T ss_pred hhhh---HHHHHHHHHHHHhcCCCceEEEecceeecccceecccceeeEEEEEEeccccCCcccccccccccccChHHHh
Confidence 9986 78899999999999999999 689999999999999999998877766431 1
Q ss_pred ------------CCCCCCccCCCCCCCCcccEEEEEEECCCCeEEEEeeeeecc
Q 019751 137 ------------GLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMD 178 (336)
Q Consensus 137 ------------~~~~~~v~aP~FP~~K~E~WwvvlgD~~~n~Ll~~krv~~~~ 178 (336)
....++++||+||..+.-.|||.+.+++.+.++. ..+++.+
T Consensus 450 ~~~~~~~ai~~d~~~~pys~Ap~f~t~~~~~w~~~v~~~~Qt~~Ii-p~~Si~~ 502 (610)
T COG5407 450 ASVIETGAIKNDSSDSPYSEAPDFATRNDSEWAVRVAKCEQTVYII-PGGSIAT 502 (610)
T ss_pred hhccCccccccCCCCCCcccCcccccccCcceEEEeeccccceEEe-CCccccc
Confidence 0235689999999999989999999999877764 7777654
No 5
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.74 E-value=4e-20 Score=198.98 Aligned_cols=329 Identities=26% Similarity=0.221 Sum_probs=256.0
Q ss_pred CCcccchhhccCCHHHHHHHHHHHHHHHH---------------hcCCCccCCCCCCCCCCCCcccCCCCCHHHHHHHhh
Q 019751 1 MAVIPRTAQGHGWLRPAVGVVELSQSIIQ---------------AVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIAR 65 (336)
Q Consensus 1 ~~~~~~~aa~~GwL~~al~~m~L~Q~IvQ---------------A~W~~~~~~~~~~~~~~spLlQLPh~~~e~v~kl~~ 65 (336)
|+.++|+++.+||+.+.+..|...|||.| ++..++|++..-+.+...+.+| |||.+-+.+.+.+
T Consensus 118 ~~~ilr~~~~~~~lE~~L~~ll~~e~~slV~~l~kNr~~i~~~t~L~~aaresE~~siEe~m~~lg-p~l~d~V~~~~a~ 196 (1674)
T KOG0951|consen 118 AAEILRTASDDGDLEPKLVVLLQFEKISLVEFLRKNRLGIVWCTRLARAARESERLSIEEIMRFLG-PELNDIVAKYIAT 196 (1674)
T ss_pred HHHhHhhccCchhhhHHHHHhhhhhhhHHHHHHHhhcchhhHHHHhhhhhccchhccHHHHHhhcC-hhhHHHHHHHHhh
Confidence 56789999999999999999999999999 6776666666666678889999 9998877777665
Q ss_pred H------HhhcCCHHHHHHHHhhccCCChHHHHHHHHHHhcCCceeEEEEEEecCCccccCCCeEEEEEeeeeeccCCCC
Q 019751 66 K------ELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLI 139 (336)
Q Consensus 66 k------~L~~~~~~er~~lL~~~~gls~~q~~~v~~v~~~lP~I~v~~~~~V~ge~~It~g~~vtl~~~V~L~R~n~~~ 139 (336)
. ++..+....+..++....+++. .++..+..+.|.|+++..+..+|+..++.|+..+...|+++++++...
T Consensus 197 ~~~~~~qeek~~~l~~~e~~~~~~~~ls~---td~~~v~~~~~~iDLekt~ftEGe~lm~e~~c~lP~GS~rl~kk~yee 273 (1674)
T KOG0951|consen 197 RQTKSEQEEKEKKLEKREELLVSVIALSK---TDVLGVLEMRPVIDLEKTCFTEGEELMQEGKCKLPQGSFRLKKKGYEE 273 (1674)
T ss_pred hcccccchhhhhhhhccchhhhhhhhhcc---cccccccccCcccchhhhhhhhhhhhhccCceecCCccEEEecCCceE
Confidence 4 3333333333333332122322 344447889999999989999999999999999999999999999887
Q ss_pred CCCccCCCCCCCCcccEEEEEEECCCCeEEEEeeeeeccchhHHhhhhhhhhhhhcCCC-CccchhhHHHHHHHhhhhcC
Q 019751 140 GALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEPAAITAASKAIEDTMEGSG-ATVKETSAAVREAAEKVRSG 218 (336)
Q Consensus 140 ~~~v~aP~FP~~K~E~WwvvlgD~~~n~Ll~~krv~~~~~~~~~~~~~k~i~~~~~~~g-~~~k~~~~~~~~~~~~~k~~ 218 (336)
...+|.||||+.+.|.+|.+..+|+-|+.+.....+|+++..+|..+++...+.+..-+ ..++.|+.++..+++.++++
T Consensus 274 vhVPa~~~~pf~~~Ekl~~iselP~Wnq~aF~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h 353 (1674)
T KOG0951|consen 274 VHVPAPSYFPFHKEEKLVKISELPKWNQPAFFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNH 353 (1674)
T ss_pred EeCCCCCCCCCCccceeEeecCCcchhhhhcccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcc
Confidence 77889999999999999999999999999999999999988888888888877666444 34678999999999999988
Q ss_pred ceeEEEEEEcCCCCceeEEEEEEcCCCcc--cceEEEEEEEeeccCccCccccccccCCCCccCCCCCcc-cccccccC-
Q 019751 219 SRLVMGKIQAPAEGNYNLTCYCLCDSWLG--CDKRTNLKVKILKRTRAGTRGGIVSEEGPIVEDGAEEEE-EDEEEEYD- 294 (336)
Q Consensus 219 ~~~v~l~F~aP~~G~~~l~l~viSDsYiG--~D~~~~i~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 294 (336)
.+...-.-..|-.+.|...+.++++-|+| |++..++.++|.+.|.+++++. ...+++...-+-.|.- ..+.+.+|
T Consensus 354 ~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~-~qieeTqVIV~TPEK~DiITRk~gdr 432 (1674)
T KOG0951|consen 354 LREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGK-EQIEETQVIVTTPEKWDIITRKSGDR 432 (1674)
T ss_pred cccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccchh-hhhhcceeEEeccchhhhhhcccCch
Confidence 88654333456688999999999999999 9999999999999999888766 4444445544444433 33445555
Q ss_pred CcCCcccccchhhh---hhcccCCCCCCccccCCC-CCCCCCCC
Q 019751 295 DYESEYSEDEEDER---DTKKKVPAANGTVSKKGT-NSELSGSD 334 (336)
Q Consensus 295 ~~~s~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~ 334 (336)
+|++.|..+..||. ..++.....++++..... +++.+|+.
T Consensus 433 aY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~~e~~R 476 (1674)
T KOG0951|consen 433 AYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTEEGSR 476 (1674)
T ss_pred hHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhcccCce
Confidence 99999999999998 344555556777665544 44666664
No 6
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.56 E-value=6.5e-14 Score=151.80 Aligned_cols=212 Identities=14% Similarity=0.263 Sum_probs=163.5
Q ss_pred chhhccCCHHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCcccCCCCCHHHHHHHhhH-----HhhcCCHHHHHHHH
Q 019751 6 RTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK-----ELRDMSLQDRAELL 80 (336)
Q Consensus 6 ~~aa~~GwL~~al~~m~L~Q~IvQA~W~~~~~~~~~~~~~~spLlQLPh~~~e~v~kl~~k-----~L~~~~~~er~~lL 80 (336)
.++..+||...+..++.+|+|+.+.+|+ ...||+|+|.++.+++.+++.+ .+.++++.+...++
T Consensus 922 ei~l~rgw~~~~~~~l~~ck~v~~r~w~-----------~~~plrqf~~~~~ev~~~lE~k~~~~~r~~~l~~~elg~lI 990 (1674)
T KOG0951|consen 922 EIVLKRGWAGLAQMALNLCKMVEKRMWP-----------TQTPLRQFKGCPKEVLRRLEKKELPWGRYYDLDPAELGELI 990 (1674)
T ss_pred HHHhhcCcchHHHHHHHhHhHhhhhccc-----------ccCchhhcCCCCHHHHHHHHhccCcchhhhccCHHHHHHHh
Confidence 3567899999999999999999999999 7899999999999999999987 78899999999888
Q ss_pred hhccCCChHHHHHHHHHHhcCCceeEEEEEEecCCccccCCCeEEEEEeeeeeccCCCCCCCccCCCCCC-----CCccc
Q 019751 81 SQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPF-----HKEEN 155 (336)
Q Consensus 81 ~~~~gls~~q~~~v~~v~~~lP~I~v~~~~~V~ge~~It~g~~vtl~~~V~L~R~n~~~~~~v~aP~FP~-----~K~E~ 155 (336)
+ .++-.+.+..++.+||++.+.+.++ +|+.+ .+.+. +.+ .|.|-| .-.|.
T Consensus 991 ~-----~~k~G~~l~~~~~~fpk~s~~~~vq-----pitr~-~~~~~--l~i------------~~~f~wd~~vh~~~e~ 1045 (1674)
T KOG0951|consen 991 G-----VPKMGKPLHLFIRQFPKLSVSAHVQ-----PITRS-VYRVE--LTI------------TPDFDWDDKVHGSVEP 1045 (1674)
T ss_pred c-----CcccChhHHHHHHhcccceeeeeee-----eeeee-EEEEE--EEE------------eecccchhhhcccccc
Confidence 7 3556778888999999999776654 35553 55555 444 455554 24688
Q ss_pred EEEEEEECCCCeEEEEeeeeeccchhHHhhhhhhhhhhhcCCCCccchhhHHHHHHHhhhhcCceeEEEEEEcC-CCCce
Q 019751 156 FWFLLADSVSNNVWFSQKVSFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAP-AEGNY 234 (336)
Q Consensus 156 WwvvlgD~~~n~Ll~~krv~~~~~~~~~~~~~k~i~~~~~~~g~~~k~~~~~~~~~~~~~k~~~~~v~l~F~aP-~~G~~ 234 (336)
||++|.|....+|++..-+-+.+ + ...+.|+.| -.++.
T Consensus 1046 F~i~ved~dge~il~~e~~~~~k---------------------------------------~--~~~v~ft~~~~~~pP 1084 (1674)
T KOG0951|consen 1046 FWIIVEDTDGEKILHHEFFLLKK---------------------------------------K--EHTVNFTVPLFEPPP 1084 (1674)
T ss_pred eEEEEEccCccceeeeeeEEecc---------------------------------------C--ceEEEEEeecCCCCC
Confidence 99999999999999988877654 0 234799999 33389
Q ss_pred eEEEEEEcCCCcccceEEEEEEEeeccCccCccccccccCCCCccCCCCCcccccccccCCcCCccccc
Q 019751 235 NLTCYCLCDSWLGCDKRTNLKVKILKRTRAGTRGGIVSEEGPIVEDGAEEEEEDEEEEYDDYESEYSED 303 (336)
Q Consensus 235 ~l~l~viSDsYiG~D~~~~i~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 303 (336)
+|.|.++||.|+|....+|+.|+-+..|++-.--+.+-+.-|..-.+...+ +++.-|-|+
T Consensus 1085 ~~fi~lvSd~wl~s~~~~Pvsfr~l~lpek~p~pt~lld~~~~~~~~l~N~---------~~~~lf~~~ 1144 (1674)
T KOG0951|consen 1085 QYFIRLVSDRWLHSETVLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNP---------SFETLFQDF 1144 (1674)
T ss_pred ceEEEEeeccccCCCcccccchhhccCcccCCCCchhhhccccchhccCCc---------chhhhcccc
Confidence 999999999999999999999999988864332233333333333333333 466666655
No 7
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.05 E-value=1.3e-05 Score=87.54 Aligned_cols=181 Identities=15% Similarity=0.136 Sum_probs=126.9
Q ss_pred hhhccCCHHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCcccCCCCCHHHHHHHhhH-HhhcCCHHHHHHHHhhccC
Q 019751 7 TAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK-ELRDMSLQDRAELLSQVGG 85 (336)
Q Consensus 7 ~aa~~GwL~~al~~m~L~Q~IvQA~W~~~~~~~~~~~~~~spLlQLPh~~~e~v~kl~~k-~L~~~~~~er~~lL~~~~g 85 (336)
++...||-..+.+++.||+||...||- ...++.|++..-. .+...+ .|++|...+.++++..
T Consensus 713 i~~~~~~~~~~~~~l~l~k~ier~mw~-----------~~~~l~qf~~~~~---~~~~~~~~l~~L~~~~~g~~w~~--- 775 (1230)
T KOG0952|consen 713 IVLRQNWHLLSNRMLNLCKRIERRMWD-----------FFIPLKQFTLLLN---RKERKKLTLLLLRKDELGELWHN--- 775 (1230)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHh-----------hhhhhhcCCcccc---hhhhhcchHHhhhhhhhcccccc---
Confidence 345679999999999999999999998 8899999987644 222222 7788887788877763
Q ss_pred CChHHHHHHHHHHhcCCceeEEEEEEecCCccccCCCeEEEEEeeeeeccCCCCCCCccCCCCCCCCcccEEEEEEECCC
Q 019751 86 FSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVS 165 (336)
Q Consensus 86 ls~~q~~~v~~v~~~lP~I~v~~~~~V~ge~~It~g~~vtl~~~V~L~R~n~~~~~~v~aP~FP~~K~E~WwvvlgD~~~ 165 (336)
. ....+.+..+|.+++++.+.. ++. +++.|. +.+.+. +.|.-... -..|-.+++.|...
T Consensus 776 -~----~~~~k~l~~ip~v~v~a~~~p-----~t~-~vlri~--~~~~~~------f~w~~~~h--g~~g~~i~~ed~~~ 834 (1230)
T KOG0952|consen 776 -V----PYGLKQLSGIPLVNVEALIQP-----ITR-NVLRIE--VAITPD------FEWNDGIH--GKAGQPIFKEDSSL 834 (1230)
T ss_pred -C----chhhhhhccCCceehhhhhcc-----chh-hhheee--eccCCc------eEEecccc--cccCceeEeecCCC
Confidence 2 223888999999998877542 222 355555 444321 22221111 22333499999999
Q ss_pred CeEEEEeeeeeccchhHHhhhhhhhhhhhcCCCCccchhhHHHHHHHhhhhcCceeEEEEEEcC--CCCceeEEEEEEcC
Q 019751 166 NNVWFSQKVSFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAP--AEGNYNLTCYCLCD 243 (336)
Q Consensus 166 n~Ll~~krv~~~~~~~~~~~~~k~i~~~~~~~g~~~k~~~~~~~~~~~~~k~~~~~v~l~F~aP--~~G~~~l~l~viSD 243 (336)
+.+++++...+..... +.++ -+.|.+| +|-+.++.+++.||
T Consensus 835 ~~i~h~e~~~~~~~~~-----------------------------------~~s~--~lvf~ipis~pLps~~~~~~~s~ 877 (1230)
T KOG0952|consen 835 LPILHIEVFLVNCKKV-----------------------------------NESQ--LLVFTIPISDPLPSQIRHRAVSD 877 (1230)
T ss_pred Ccceeeeeehhhhhhh-----------------------------------hhhh--heeEEeecccCCccceEEeeecc
Confidence 9999988876654210 0112 2678888 78889999999999
Q ss_pred CCcccceEEEEEEEeeccC
Q 019751 244 SWLGCDKRTNLKVKILKRT 262 (336)
Q Consensus 244 sYiG~D~~~~i~l~V~~~~ 262 (336)
.|+|++..+++.+.-...+
T Consensus 878 ~~l~~e~~~~~s~~~~il~ 896 (1230)
T KOG0952|consen 878 NWLGAETVYPLSFQHLILP 896 (1230)
T ss_pred cccCCceeccccccceecc
Confidence 9999999999887766554
No 8
>PRK01172 ski2-like helicase; Provisional
Probab=97.90 E-value=1.1e-05 Score=85.75 Aligned_cols=80 Identities=11% Similarity=0.215 Sum_probs=68.9
Q ss_pred hhhccCCHHHHHHH------HHHHHH-------HHHhcCCCccCCCCCCCCCCCCcccCCCCCHHHHHHHhhH------H
Q 019751 7 TAQGHGWLRPAVGV------VELSQS-------IIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK------E 67 (336)
Q Consensus 7 ~aa~~GwL~~al~~------m~L~Q~-------IvQA~W~~~~~~~~~~~~~~spLlQLPh~~~e~v~kl~~k------~ 67 (336)
.....+|+..++.. |+|+|| |+||+|. ...||+|||||+...++++... +
T Consensus 570 ~~~~~~~~~~a~~~~~~~~~~~~~~~l~~~~~rl~~gv~~-----------~~~~L~~ip~~~~~~a~~l~~~g~~~~~d 638 (674)
T PRK01172 570 RASSADWISYSLARLSSIYKPEMRRKLEILNIRIKEGIRE-----------DLIDLVLIPKVGRVRARRLYDAGFKTVDD 638 (674)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCH-----------HHHhhcCCCCCCHHHHHHHHHcCCCCHHH
Confidence 35677999878777 999999 9999998 7899999999999999988765 8
Q ss_pred hhcCCHHHHHHHHhhccCCChHHHHHHHHHHhcC
Q 019751 68 LRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMM 101 (336)
Q Consensus 68 L~~~~~~er~~lL~~~~gls~~q~~~v~~v~~~l 101 (336)
+..+++++|.++++ +++++++.+...+.++
T Consensus 639 i~~~~~~~~~~i~~----~~~~~~~~i~~~~~~~ 668 (674)
T PRK01172 639 IARSSPERIKKIYG----FSDTLANAIVNRAMKI 668 (674)
T ss_pred HHhCCHHHHHHHhc----cCHHHHHHHHHHHHHH
Confidence 99999999988865 8888888887776654
No 9
>PRK02362 ski2-like helicase; Provisional
Probab=97.41 E-value=0.00017 Score=77.67 Aligned_cols=76 Identities=12% Similarity=0.026 Sum_probs=62.5
Q ss_pred hccCCHHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCcccCCCCCHHHHHHHhhH------HhhcCCHHHHHHHHhh
Q 019751 9 QGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK------ELRDMSLQDRAELLSQ 82 (336)
Q Consensus 9 a~~GwL~~al~~m~L~Q~IvQA~W~~~~~~~~~~~~~~spLlQLPh~~~e~v~kl~~k------~L~~~~~~er~~lL~~ 82 (336)
++.+|+..+..+|+|+|||.||+|. ...||+|||||....++++... +|..++++++..+++
T Consensus 625 ~~~~~~~~~~~~~~l~~~l~~gv~~-----------~~~~L~~ip~i~~~~a~~l~~~gi~s~~dl~~~~~~~l~~~~g- 692 (737)
T PRK02362 625 ASELDLDLARAARELEKRVEYGVRE-----------ELLDLVGLRGVGRVRARRLYNAGIESRADLRAADKSVVLAILG- 692 (737)
T ss_pred HHHhCccHHHHHHHHHHHHHhCCCH-----------HHHHHhCCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHHC-
Confidence 3456778899999999999999998 7899999999999988887654 788888888887754
Q ss_pred ccCCChHHHHHHHHHHhcC
Q 019751 83 VGGFSSTEVQDVEMVLQMM 101 (336)
Q Consensus 83 ~~gls~~q~~~v~~v~~~l 101 (336)
.+..+.+.+.+..+
T Consensus 693 -----~~~~~~i~~~~~~~ 706 (737)
T PRK02362 693 -----EKIAENILEQAGRR 706 (737)
T ss_pred -----HHHHHHHHHHhCcc
Confidence 56677777777643
No 10
>PRK00254 ski2-like helicase; Provisional
Probab=96.92 E-value=0.0011 Score=71.14 Aligned_cols=73 Identities=11% Similarity=0.148 Sum_probs=58.0
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCcccCCCCCHHHHHHHhhH------HhhcCCHHHHHHHHhhcc
Q 019751 11 HGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK------ELRDMSLQDRAELLSQVG 84 (336)
Q Consensus 11 ~GwL~~al~~m~L~Q~IvQA~W~~~~~~~~~~~~~~spLlQLPh~~~e~v~kl~~k------~L~~~~~~er~~lL~~~~ 84 (336)
.+|++ ++. +|+|||+||+|. ..+||.|+|||....++++-.. ++..++++++.++ .
T Consensus 623 ~~~~~-~l~--~l~~rl~~g~~~-----------~~~~L~~ipgig~~~~~~l~~~g~~s~~~i~~a~~~el~~~----~ 684 (720)
T PRK00254 623 QEVLD-YLE--TLHLRVKHGVRE-----------ELLELMRLPMIGRKRARALYNAGFRSIEDIVNAKPSELLKV----E 684 (720)
T ss_pred hhHHH-HHH--HHHHHHHcCCCH-----------HHhhhhcCCCCCHHHHHHHHHccCCCHHHHHhCCHHHHhcC----C
Confidence 45554 333 899999999998 7899999999999988887664 6777787777654 4
Q ss_pred CCChHHHHHHHHHHhcC
Q 019751 85 GFSSTEVQDVEMVLQMM 101 (336)
Q Consensus 85 gls~~q~~~v~~v~~~l 101 (336)
|+..+.++.|.+.++..
T Consensus 685 gi~~~~a~~i~~~~~~~ 701 (720)
T PRK00254 685 GIGAKIVEGIFKHLGVE 701 (720)
T ss_pred CCCHHHHHHHHHHhccc
Confidence 58888899999888744
No 11
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=86.20 E-value=0.35 Score=53.53 Aligned_cols=18 Identities=50% Similarity=0.813 Sum_probs=12.3
Q ss_pred cccccCCcCCcccccchh
Q 019751 289 EEEEYDDYESEYSEDEED 306 (336)
Q Consensus 289 ~~~~~~~~~s~~~~~~~~ 306 (336)
||+|+|++++||||||+-
T Consensus 327 ed~eDde~~deYsDDeD~ 344 (1233)
T KOG1824|consen 327 EDEEDDEQDDEYSDDEDM 344 (1233)
T ss_pred hccccchhccccccccch
Confidence 444555666999999763
No 12
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=84.86 E-value=0.67 Score=37.78 Aligned_cols=42 Identities=38% Similarity=0.523 Sum_probs=22.9
Q ss_pred ccccccCCCCccCCCCCcccccccccCCcCCcccccchhhhh
Q 019751 268 GGIVSEEGPIVEDGAEEEEEDEEEEYDDYESEYSEDEEDERD 309 (336)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 309 (336)
...|+++.|..+.-.++++++|++++++.++|.+++++++.+
T Consensus 49 ~nlvPIGK~~se~~~~~e~d~e~~~dd~d~~e~~~~d~de~~ 90 (92)
T PF15243_consen 49 NNLVPIGKPASEPEEEEEEDDEDEDDDSDDSEESMQDDDEMN 90 (92)
T ss_pred cCcCccCCCCCcccccccccccccccccccccchhccchhcc
Confidence 455788888877223333333444444555666566656553
No 13
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=83.49 E-value=0.35 Score=39.66 Aligned_cols=8 Identities=38% Similarity=0.746 Sum_probs=0.0
Q ss_pred cCCCCCcc
Q 019751 279 EDGAEEEE 286 (336)
Q Consensus 279 ~~~~~~~~ 286 (336)
+.+.++++
T Consensus 13 e~dsdEde 20 (101)
T PF09026_consen 13 ESDSDEDE 20 (101)
T ss_dssp --------
T ss_pred ccccccch
Confidence 33333333
No 14
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=81.42 E-value=1.1 Score=42.94 Aligned_cols=9 Identities=22% Similarity=0.254 Sum_probs=4.6
Q ss_pred HHHHhcCCc
Q 019751 95 EMVLQMMPS 103 (336)
Q Consensus 95 ~~v~~~lP~ 103 (336)
...++++|.
T Consensus 57 C~s~qrlp~ 65 (314)
T PF06524_consen 57 CQSVQRLPM 65 (314)
T ss_pred hhhhhcCch
Confidence 344555554
No 15
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=78.87 E-value=30 Score=27.23 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=27.4
Q ss_pred cccCCCeEEEEEeeeeeccCCCCCCCccCCCCCCCCcccEEEEEEECCCCeEEEEeee
Q 019751 117 GIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKV 174 (336)
Q Consensus 117 ~It~g~~vtl~~~V~L~R~n~~~~~~v~aP~FP~~K~E~WwvvlgD~~~n~Ll~~krv 174 (336)
-..||+.|++. +.+...++ .++.+....-.|.|.|+..+.+ .....
T Consensus 10 iYrPGetV~~~--~~~~~~~~---------~~~~~~~~~~~v~i~dp~g~~v-~~~~~ 55 (99)
T PF01835_consen 10 IYRPGETVHFR--AIVRDLDN---------DFKPPANSPVTVTIKDPSGNEV-FRWSV 55 (99)
T ss_dssp EE-TTSEEEEE--EEEEEECT---------TCSCESSEEEEEEEEETTSEEE-EEEEE
T ss_pred CcCCCCEEEEE--EEEecccc---------ccccccCCceEEEEECCCCCEE-EEEEe
Confidence 46899999999 66654321 1333444556799999955554 43343
No 16
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=77.95 E-value=1.6 Score=41.94 Aligned_cols=7 Identities=43% Similarity=0.505 Sum_probs=3.1
Q ss_pred ccCCCCC
Q 019751 143 PHAPYYP 149 (336)
Q Consensus 143 v~aP~FP 149 (336)
.||=..|
T Consensus 116 ~HaC~Cp 122 (314)
T PF06524_consen 116 THACTCP 122 (314)
T ss_pred cccccCc
Confidence 3444444
No 17
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=71.87 E-value=3.6 Score=42.26 Aligned_cols=10 Identities=20% Similarity=0.584 Sum_probs=4.0
Q ss_pred CCcccceEEE
Q 019751 244 SWLGCDKRTN 253 (336)
Q Consensus 244 sYiG~D~~~~ 253 (336)
.||--+..+.
T Consensus 14 dWi~~~~~~~ 23 (458)
T PF10446_consen 14 DWIRQDTDYK 23 (458)
T ss_pred hhhhcccccc
Confidence 4444443333
No 18
>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking
Probab=65.47 E-value=33 Score=29.94 Aligned_cols=36 Identities=22% Similarity=0.221 Sum_probs=25.6
Q ss_pred EEEEcC--CCCceeEEEEEEcCCCcccceEEEEEEEeeccCc
Q 019751 224 GKIQAP--AEGNYNLTCYCLCDSWLGCDKRTNLKVKILKRTR 263 (336)
Q Consensus 224 l~F~aP--~~G~~~l~l~viSDsYiG~D~~~~i~l~V~~~~~ 263 (336)
+.+.+| ..|+ .+.=-+.+|.| |.-+-+-|...+++-
T Consensus 7 ~tvrVpt~~~G~-~l~WeFaTd~y---DIgFG~~few~~~~s 44 (136)
T PF13897_consen 7 VTVRVPTHPEGK-CLFWEFATDSY---DIGFGVYFEWTPPTS 44 (136)
T ss_pred EEEEcccCCCCC-EEEEEEeeCCC---CceEEEEEEecCCCC
Confidence 344555 5675 67777889999 777778887777653
No 19
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=65.45 E-value=5.9 Score=42.66 Aligned_cols=10 Identities=20% Similarity=0.590 Sum_probs=6.1
Q ss_pred EEEEEcCCCc
Q 019751 237 TCYCLCDSWL 246 (336)
Q Consensus 237 ~l~viSDsYi 246 (336)
.|.|+|=+|+
T Consensus 831 vViVVcVgfL 840 (952)
T KOG1834|consen 831 VVIVVCVGFL 840 (952)
T ss_pred EEEEeehhHH
Confidence 3566676664
No 20
>PF06051 DUF928: Domain of Unknown Function (DUF928); InterPro: IPR010328 This is a family of uncharacterised bacterial proteins.
Probab=59.30 E-value=32 Score=31.27 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=20.5
Q ss_pred CCC-ceeEEEEEEcCCCc-ccceEEEEEEEeeccC
Q 019751 230 AEG-NYNLTCYCLCDSWL-GCDKRTNLKVKILKRT 262 (336)
Q Consensus 230 ~~G-~~~l~l~viSDsYi-G~D~~~~i~l~V~~~~ 262 (336)
++| .|++.+.++||.-- -.|.-+.-.++...++
T Consensus 88 e~gk~Y~W~~~l~Cd~~~~s~~~~v~G~I~Rv~~~ 122 (189)
T PF06051_consen 88 EVGKTYRWYFSLICDPQDRSDDIFVEGWIQRVELS 122 (189)
T ss_pred CCCCeEEEEEEEEECCCCCCCCceEEEEEEEeCCC
Confidence 567 49999999998642 2334444445555544
No 21
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=58.50 E-value=7.2 Score=42.65 Aligned_cols=13 Identities=15% Similarity=0.148 Sum_probs=6.8
Q ss_pred CCeEEEEeeeeec
Q 019751 165 SNNVWFSQKVSFM 177 (336)
Q Consensus 165 ~n~Ll~~krv~~~ 177 (336)
.=+|+++.||.|.
T Consensus 785 eVEiv~~ERV~f~ 797 (960)
T KOG1189|consen 785 EVEIVNLERVQFG 797 (960)
T ss_pred ceeeeeeeeeeec
Confidence 3455555555553
No 22
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=58.22 E-value=3.3 Score=36.47 Aligned_cols=13 Identities=8% Similarity=0.026 Sum_probs=6.0
Q ss_pred CCeEEEEeeeeec
Q 019751 165 SNNVWFSQKVSFM 177 (336)
Q Consensus 165 ~n~Ll~~krv~~~ 177 (336)
....|+++.+.+.
T Consensus 28 ~~h~L~L~~v~Lg 40 (149)
T PF03066_consen 28 NEHQLSLRQVCLG 40 (149)
T ss_dssp SCEEEEEEEEEE-
T ss_pred cccEEEEEEeecC
Confidence 3444555555553
No 23
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A ....
Probab=57.78 E-value=11 Score=27.40 Aligned_cols=48 Identities=15% Similarity=0.283 Sum_probs=36.0
Q ss_pred CcccCCCCCHHHHHHHhhH------HhhcCCHHHHHHHHhhccCCChHHHHHHHHHHh
Q 019751 48 PFLQLPHFTEAVIKKIARK------ELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQ 99 (336)
Q Consensus 48 pLlQLPh~~~e~v~kl~~k------~L~~~~~~er~~lL~~~~gls~~q~~~v~~v~~ 99 (336)
.|+++|++.+..+.++... +|...+.+++.. +.|++++.++.+...++
T Consensus 6 ~L~~I~Gig~~~a~~L~~~G~~t~~~l~~a~~~~L~~----i~Gig~~~a~~i~~~~~ 59 (60)
T PF14520_consen 6 DLLSIPGIGPKRAEKLYEAGIKTLEDLANADPEELAE----IPGIGEKTAEKIIEAAR 59 (60)
T ss_dssp HHHTSTTCHHHHHHHHHHTTCSSHHHHHTSHHHHHHT----STTSSHHHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHhcCCCcHHHHHcCCHHHHhc----CCCCCHHHHHHHHHHHh
Confidence 4788999999888887664 666666655433 46799999998887765
No 24
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=55.61 E-value=9 Score=39.91 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=11.2
Q ss_pred EEEEEEECCCCeEEEEeeeee
Q 019751 156 FWFLLADSVSNNVWFSQKVSF 176 (336)
Q Consensus 156 WwvvlgD~~~n~Ll~~krv~~ 176 (336)
+-++.|...+.-++.-++..|
T Consensus 117 ~~Cl~gefvseallvp~kC~f 137 (615)
T KOG3540|consen 117 YRCLAGEFVSEALLVPEKCQF 137 (615)
T ss_pred ceeecCcchhhhccCcccchh
Confidence 445666555555555444444
No 25
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=52.68 E-value=42 Score=24.19 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=21.4
Q ss_pred EEEEcCCCCceeEEEEEEcCCC-cccceEEEEEEEee
Q 019751 224 GKIQAPAEGNYNLTCYCLCDSW-LGCDKRTNLKVKIL 259 (336)
Q Consensus 224 l~F~aP~~G~~~l~l~viSDsY-iG~D~~~~i~l~V~ 259 (336)
+.|.-=.||.|.|.|+++...- ...+. ..|.|.|+
T Consensus 31 ~~~~~L~~G~Y~l~V~a~~~~~~~~~~~-~~l~i~I~ 66 (66)
T PF07495_consen 31 ISYTNLPPGKYTLEVRAKDNNGKWSSDE-KSLTITIL 66 (66)
T ss_dssp EEEES--SEEEEEEEEEEETTS-B-SS--EEEEEEEE
T ss_pred EEEEeCCCEEEEEEEEEECCCCCcCccc-EEEEEEEC
Confidence 5665558999999999988433 23332 66666663
No 26
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=49.39 E-value=10 Score=33.07 Aligned_cols=18 Identities=39% Similarity=0.680 Sum_probs=10.5
Q ss_pred ccccCCcCCcccccchhh
Q 019751 290 EEEYDDYESEYSEDEEDE 307 (336)
Q Consensus 290 ~~~~~~~~s~~~~~~~~~ 307 (336)
+++++|.+|+++||++++
T Consensus 31 ~~~~~d~~sd~~dd~d~e 48 (137)
T PF04281_consen 31 DEDDTDTDSDISDDSDDE 48 (137)
T ss_pred ccccccccccccccccCC
Confidence 344556677776665543
No 27
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=44.16 E-value=13 Score=40.83 Aligned_cols=6 Identities=17% Similarity=0.357 Sum_probs=3.5
Q ss_pred EEEEcC
Q 019751 224 GKIQAP 229 (336)
Q Consensus 224 l~F~aP 229 (336)
+.|..|
T Consensus 741 ~efd~p 746 (960)
T KOG1189|consen 741 LEFDVP 746 (960)
T ss_pred eeeccc
Confidence 556655
No 28
>PF00868 Transglut_N: Transglutaminase family; InterPro: IPR001102 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) (TGase) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ]. Transglutaminases are widely distributed in various organs, tissues and body fluids. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. There are commonly three domains: N-terminal, middle (IPR013808 from INTERPRO) and C-terminal (IPR013807 from INTERPRO). This entry represents the N-terminal domain found in transglutaminases.; GO: 0018149 peptide cross-linking; PDB: 1L9N_B 1NUF_A 1NUD_A 1NUG_B 1L9M_A 1KV3_C 3S3S_A 2Q3Z_A 3LY6_A 3S3P_A ....
Probab=42.81 E-value=72 Score=26.71 Aligned_cols=21 Identities=24% Similarity=0.407 Sum_probs=13.1
Q ss_pred EEEEEEcC---CCCceeEEEEEEc
Q 019751 222 VMGKIQAP---AEGNYNLTCYCLC 242 (336)
Q Consensus 222 v~l~F~aP---~~G~~~l~l~viS 242 (336)
+++.+..| ..|.|.+.|.+.|
T Consensus 95 ~tv~V~spa~A~VG~y~l~v~~~s 118 (118)
T PF00868_consen 95 VTVSVTSPANAPVGRYKLSVETKS 118 (118)
T ss_dssp EEEEEE--TTS--EEEEEEEEEEE
T ss_pred EEEEEECCCCCceEEEEEEEEEeC
Confidence 55677777 3699999988764
No 29
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=40.00 E-value=22 Score=38.56 Aligned_cols=9 Identities=22% Similarity=0.062 Sum_probs=5.3
Q ss_pred HHHHHhcCC
Q 019751 25 QSIIQAVPL 33 (336)
Q Consensus 25 Q~IvQA~W~ 33 (336)
|-++=|.|.
T Consensus 484 qLvVGACW~ 492 (952)
T KOG1834|consen 484 QLVVGACWQ 492 (952)
T ss_pred eeEEeeecc
Confidence 344556776
No 30
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=37.47 E-value=28 Score=38.77 Aligned_cols=6 Identities=0% Similarity=0.008 Sum_probs=2.8
Q ss_pred HhhcCC
Q 019751 67 ELRDMS 72 (336)
Q Consensus 67 ~L~~~~ 72 (336)
.+++|.
T Consensus 104 ~~fnL~ 109 (840)
T PF04147_consen 104 SKFNLE 109 (840)
T ss_pred hccCCC
Confidence 445553
No 31
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=36.54 E-value=21 Score=34.47 Aligned_cols=11 Identities=9% Similarity=0.054 Sum_probs=6.4
Q ss_pred eEEEEEEcCCC
Q 019751 235 NLTCYCLCDSW 245 (336)
Q Consensus 235 ~l~l~viSDsY 245 (336)
.|...+.|..|
T Consensus 165 ELm~RLk~G~Y 175 (303)
T KOG3064|consen 165 ELMERLKSGTY 175 (303)
T ss_pred HHHHHHhcCCc
Confidence 34455666666
No 32
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=35.81 E-value=1.1e+02 Score=26.58 Aligned_cols=55 Identities=24% Similarity=0.310 Sum_probs=41.1
Q ss_pred CCCcccCCCC---------CHHHHHHHhhH-----HhhcCCHHHHHHHHhhccCCChHHHHHHHHHHhcC
Q 019751 46 TAPFLQLPHF---------TEAVIKKIARK-----ELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMM 101 (336)
Q Consensus 46 ~spLlQLPh~---------~~e~v~kl~~k-----~L~~~~~~er~~lL~~~~gls~~q~~~v~~v~~~l 101 (336)
...|.+.|.+ .++.++.+-.+ .|++|++.+...+|.. .|.++++...+.++++.+
T Consensus 60 ~~~l~~yP~l~~WL~vVgl~~~~i~~i~~~~~tLe~Llemsd~el~~~l~~-~g~~~EE~rRL~~Al~~L 128 (129)
T PF13543_consen 60 AAELNSYPSLRQWLRVVGLRPESIQAILSKVLTLEALLEMSDEELKEILNR-CGAREEECRRLCRALSNL 128 (129)
T ss_pred chhcccCCcHHHHhhhcCCCHHHHHHHHHhhcCHHHHHhCCHHHHHHHHHH-hCCCHHHHHHHHHHHHhc
Confidence 3456677744 56777766433 8999999999999987 677888888888777653
No 33
>PF00386 C1q: C1q domain; InterPro: IPR001073 This entry represents the C-terminal domain of C1q. C1q is a subunit of the C1 enzyme complex that activates the serum complement system. C1q comprises 6 A, 6 B and 6 C chains. These share the same topology, each possessing a small, globular N-terminal domain, a collagen-like Gly/Pro-rich central region, and a conserved C-terminal region, the C1q domain []. The C1q protein is produced in collagen-producing cells and shows sequence and structural similarity to collagens VIII and X [, ]. This domain is also found in multimerin and EMILIN proteins.; PDB: 1O91_C 2JG8_D 2JG9_A 2WNV_A 2WNU_A 1PK6_A 4DOU_A 1C3H_C 1C28_C 2OII_A ....
Probab=33.96 E-value=70 Score=26.36 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=14.7
Q ss_pred EEEEcCCCCceeEEEEEE
Q 019751 224 GKIQAPAEGNYNLTCYCL 241 (336)
Q Consensus 224 l~F~aP~~G~~~l~l~vi 241 (336)
..|++|.+|.|.|.+.++
T Consensus 37 G~Ftap~~G~Y~F~~~~~ 54 (127)
T PF00386_consen 37 GIFTAPVPGVYFFSFTIM 54 (127)
T ss_dssp TEEE-SS-EEEEEEEEEE
T ss_pred CEEecCCCCEEEEEEEEe
Confidence 379999999999999998
No 34
>COG1470 Predicted membrane protein [Function unknown]
Probab=32.95 E-value=96 Score=32.51 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=35.0
Q ss_pred CceeEEEEEEcC---CCCceeEEEEEEcCCCcccceEEEEEEEeeccCc
Q 019751 218 GSRLVMGKIQAP---AEGNYNLTCYCLCDSWLGCDKRTNLKVKILKRTR 263 (336)
Q Consensus 218 ~~~~v~l~F~aP---~~G~~~l~l~viSDsYiG~D~~~~i~l~V~~~~~ 263 (336)
++..|.+.+.+| .+|.|..++...|| -..++-.+++.|...+.
T Consensus 442 e~~tV~ltI~vP~~a~aGdY~i~i~~ksD---q~s~e~tlrV~V~~sS~ 487 (513)
T COG1470 442 ESKTVSLTITVPEDAGAGDYRITITAKSD---QASSEDTLRVVVGQSST 487 (513)
T ss_pred CcceEEEEEEcCCCCCCCcEEEEEEEeec---cccccceEEEEEecccc
Confidence 456799999999 48999999999999 35666777888877764
No 35
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=31.94 E-value=74 Score=25.73 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=16.8
Q ss_pred EEEcC--CCCceeEEEEEEcCCCcccceEEEEEEEee
Q 019751 225 KIQAP--AEGNYNLTCYCLCDSWLGCDKRTNLKVKIL 259 (336)
Q Consensus 225 ~F~aP--~~G~~~l~l~viSDsYiG~D~~~~i~l~V~ 259 (336)
.|.+| .||+|.|.+|. |..+|-=....-.+.|.
T Consensus 51 ~Fti~~V~pGtY~L~ay~--~g~~g~~~~~~~~ItV~ 85 (95)
T PF14686_consen 51 NFTIPNVRPGTYRLYAYA--DGIFGDYKVASDSITVS 85 (95)
T ss_dssp EEE---B-SEEEEEEEEE------TTEEEEEEEEEE-
T ss_pred cEEeCCeeCcEeEEEEEE--ecccCceEEecceEEEc
Confidence 79999 79999999998 55554333223444454
No 36
>COG1470 Predicted membrane protein [Function unknown]
Probab=30.62 E-value=1.1e+02 Score=32.06 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=33.1
Q ss_pred ceeEEEEEEcC---CCCceeEEEEEEcCCCcccceEEEEEEEeecc
Q 019751 219 SRLVMGKIQAP---AEGNYNLTCYCLCDSWLGCDKRTNLKVKILKR 261 (336)
Q Consensus 219 ~~~v~l~F~aP---~~G~~~l~l~viSDsYiG~D~~~~i~l~V~~~ 261 (336)
++.+.++...| .||.|++.+.+.|-+ |.-.+.+|++++.-.
T Consensus 334 ~kdvtleV~ps~na~pG~Ynv~I~A~s~s--~v~~e~~lki~~~g~ 377 (513)
T COG1470 334 EKDVTLEVYPSLNATPGTYNVTITASSSS--GVTRELPLKIKNTGS 377 (513)
T ss_pred ceEEEEEEecCCCCCCCceeEEEEEeccc--cceeeeeEEEEeccc
Confidence 45678888888 599999999999988 778888877776543
No 37
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=30.37 E-value=88 Score=30.27 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=40.0
Q ss_pred CCCcccCCCCCHHHHHHHhhH------HhhcCCHHHHHHHHhhccCCChHHHHHHHHHHhc
Q 019751 46 TAPFLQLPHFTEAVIKKIARK------ELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQM 100 (336)
Q Consensus 46 ~spLlQLPh~~~e~v~kl~~k------~L~~~~~~er~~lL~~~~gls~~q~~~v~~v~~~ 100 (336)
..+|..+|.+.+..++++... +|..++++++.++++ ++.+.+..+.+.++.
T Consensus 5 ~~~l~~l~gIg~~~a~~L~~~Gi~t~~dl~~~~~~~L~~~~g----~~~~~a~~l~~~a~~ 61 (317)
T PRK04301 5 EKDLEDLPGVGPATAEKLREAGYDTVEAIAVASPKELSEAAG----IGESTAAKIIEAARE 61 (317)
T ss_pred cccHhhcCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHhcC----CCHHHHHHHHHHHHH
Confidence 468899999999999988875 888888888776654 777777777776654
No 38
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=29.80 E-value=82 Score=25.65 Aligned_cols=42 Identities=17% Similarity=0.097 Sum_probs=24.3
Q ss_pred ceeEEEEEEcC-CCCceeEEEEEE--cCCCcccceEEE-EEEEeec
Q 019751 219 SRLVMGKIQAP-AEGNYNLTCYCL--CDSWLGCDKRTN-LKVKILK 260 (336)
Q Consensus 219 ~~~v~l~F~aP-~~G~~~l~l~vi--SDsYiG~D~~~~-i~l~V~~ 260 (336)
...+.+.|+.+ .||.|.+.+.+- ....-=+|+... +.|+|..
T Consensus 85 ~~~~~~~i~~~L~~G~Y~i~v~l~~~~~~~~~~d~~~~~~~f~V~~ 130 (142)
T PF14524_consen 85 TYEVTFTIPKPLNPGEYSISVGLGDDSSGGEVLDWIEDALSFEVED 130 (142)
T ss_dssp EEEEEEEEE--B-SEEEEEEEEEEETTTEEEEEEEEEEEEEEEEE-
T ss_pred EEEEEEEEcCccCCCeEEEEEEEEecCCCCEEEEEECCEEEEEEEC
Confidence 34555666666 899999999992 223333455444 5788877
No 39
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=29.62 E-value=37 Score=37.85 Aligned_cols=6 Identities=33% Similarity=0.379 Sum_probs=2.6
Q ss_pred EcCCCc
Q 019751 241 LCDSWL 246 (336)
Q Consensus 241 iSDsYi 246 (336)
+-|.|.
T Consensus 317 ldD~~~ 322 (840)
T PF04147_consen 317 LDDDFE 322 (840)
T ss_pred cccccc
Confidence 344444
No 40
>cd00146 PKD polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.
Probab=28.86 E-value=1.4e+02 Score=22.21 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=23.1
Q ss_pred EEEcCCCCceeEEEEEEcCCCcccceEEEEEEEe
Q 019751 225 KIQAPAEGNYNLTCYCLCDSWLGCDKRTNLKVKI 258 (336)
Q Consensus 225 ~F~aP~~G~~~l~l~viSDsYiG~D~~~~i~l~V 258 (336)
....+.+|.|.++|.+..+. |+.....+.+.|
T Consensus 50 ~~~y~~~G~y~v~l~v~d~~--g~~~~~~~~V~V 81 (81)
T cd00146 50 THTYTKPGTYTVTLTVTNAV--GSSSTKTTTVVV 81 (81)
T ss_pred EEEcCCCcEEEEEEEEEeCC--CCEEEEEEEEEC
Confidence 45566899999999988766 776655555543
No 41
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=28.75 E-value=51 Score=24.40 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=15.0
Q ss_pred EEEEEEcCCCCceeEEEE
Q 019751 222 VMGKIQAPAEGNYNLTCY 239 (336)
Q Consensus 222 v~l~F~aP~~G~~~l~l~ 239 (336)
-.+.|.+|++|+|.+.|+
T Consensus 52 ~~i~~~~~~~GtYyi~V~ 69 (70)
T PF04151_consen 52 ESITFTAPAAGTYYIRVY 69 (70)
T ss_dssp EEEEEEESSSEEEEEEEE
T ss_pred cEEEEEcCCCEEEEEEEE
Confidence 347899999999998875
No 42
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=27.74 E-value=20 Score=39.64 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=0.0
Q ss_pred ccCCCCCCCCCCCCcccCCCC
Q 019751 35 SRKATGGSTEGTAPFLQLPHF 55 (336)
Q Consensus 35 ~~~~~~~~~~~~spLlQLPh~ 55 (336)
-||-.|.+......++..|.+
T Consensus 353 vkki~G~~~~~~~~~~vY~S~ 373 (787)
T PF03115_consen 353 VKKIFGRSRNGTDTYQVYASY 373 (787)
T ss_dssp ---------------------
T ss_pred HHHHhCCccCCCceEEEecCH
Confidence 344333333233334334433
No 43
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=27.03 E-value=31 Score=36.41 Aligned_cols=30 Identities=30% Similarity=0.588 Sum_probs=17.3
Q ss_pred ccCCCCCcccccccccC-CcCCcccccchhh
Q 019751 278 VEDGAEEEEEDEEEEYD-DYESEYSEDEEDE 307 (336)
Q Consensus 278 ~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~ 307 (336)
+.+.+++..+.+.|+.. ||+++++||||..
T Consensus 280 Dd~a~eesdd~d~e~~E~DYdee~addEE~P 310 (555)
T KOG2393|consen 280 DDEAFEESDDGDNEGRELDYDEESADDEEAP 310 (555)
T ss_pred cccccccCCCccccccccccccccCCccccc
Confidence 34444444444444333 7888899888753
No 44
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.70 E-value=39 Score=34.65 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCc-eeEEEEEEecCCccccCCCeEEEE
Q 019751 89 TEVQDVEMVLQMMPS-LTVEVTCETEGEEGIQEGDIVTIQ 127 (336)
Q Consensus 89 ~q~~~v~~v~~~lP~-I~v~~~~~V~ge~~It~g~~vtl~ 127 (336)
+|+++..+++.++-. +++.-.| .+-.+..|++|-|.
T Consensus 97 ~q~~~l~~~~~n~~~~vkf~~df---~~~s~~~Gd~VeIv 133 (514)
T KOG3130|consen 97 KQIDDLKKVMKNFESRVKFTEDF---QKMSDAAGDIVEIV 133 (514)
T ss_pred HHHHHHHHHHHhhHHHhhhcccH---hhccCCCCCeehhH
Confidence 677777777776643 3321111 11236678888776
No 45
>PF14821 Thr_synth_N: Threonine synthase N terminus; PDB: 3V7N_A 1VB3_A 1KL7_A.
Probab=26.65 E-value=88 Score=24.32 Aligned_cols=62 Identities=18% Similarity=0.363 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCCccCCCCCCCCCCCCcccCCCCCHHHHHHHhhHHhhcCCHHHHH-HHHhhc--cCCChHHHHHHHH
Q 019751 21 VELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARKELRDMSLQDRA-ELLSQV--GGFSSTEVQDVEM 96 (336)
Q Consensus 21 m~L~Q~IvQA~W~~~~~~~~~~~~~~spLlQLPh~~~e~v~kl~~k~L~~~~~~er~-~lL~~~--~gls~~q~~~v~~ 96 (336)
+.+.+.|.|++-+.| +----..+|.++.+.++.+.. ++..++. .+|... ..+++.+++.+.+
T Consensus 12 vsf~eAil~GlA~DG---------GLyvP~~iP~l~~~~l~~l~~-----~sy~elA~~il~~f~~~di~~~~L~~ii~ 76 (79)
T PF14821_consen 12 VSFKEAILQGLAPDG---------GLYVPEEIPKLSKEELEELKN-----LSYAELAFEILSPFLGDDIPEEELKEIIE 76 (79)
T ss_dssp E-HHHHHHH-SBTTS---------B-EEESS-----HHHHHHHTT-----S-HHHHHHHHHHHHCCCCS-HHHHHHHHH
T ss_pred cCHHHHHHhCCCCCC---------eeEecCcCCCCCHHHHHHHHC-----CCHHHHHHHHHHHHHccCCCHHHHHHHHH
Confidence 467889999987632 222223588888877775544 3444432 233221 2456666666543
No 46
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=26.20 E-value=2.6e+02 Score=25.50 Aligned_cols=52 Identities=13% Similarity=0.296 Sum_probs=34.0
Q ss_pred CCCCcccCCCCCHHHHHHHhhH---Hhhc--CC-----HHHHHHHHhhccCCChHHHHHHHHHH
Q 019751 45 GTAPFLQLPHFTEAVIKKIARK---ELRD--MS-----LQDRAELLSQVGGFSSTEVQDVEMVL 98 (336)
Q Consensus 45 ~~spLlQLPh~~~e~v~kl~~k---~L~~--~~-----~~er~~lL~~~~gls~~q~~~v~~v~ 98 (336)
+...|.++|++.+..++++--. ++.. .. .+....|+. +|+++.++..+.+-+
T Consensus 106 D~~~L~~vpGIGkKtAerIilELkdK~~~~~~~~~~~~~e~~~AL~~--LGy~~~ea~~av~~~ 167 (188)
T PRK14606 106 DVEGLSKLPGISKKTAERIVMELKDEFESAGIKDMRIYHESLEALVS--LGYPEKQAREAVKHV 167 (188)
T ss_pred CHHHHhhCCCCCHHHHHHHHHHHHHhhccccCCCcccHHHHHHHHHH--cCCCHHHHHHHHHHH
Confidence 5678999999999888876532 3321 11 223344444 899998888777665
No 47
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=25.35 E-value=58 Score=37.15 Aligned_cols=16 Identities=50% Similarity=0.613 Sum_probs=8.6
Q ss_pred CcCCcccccchhhhhh
Q 019751 295 DYESEYSEDEEDERDT 310 (336)
Q Consensus 295 ~~~s~~~~~~~~~~~~ 310 (336)
|+.|+.+|.++++.++
T Consensus 909 d~~sd~~e~e~ee~~~ 924 (1128)
T KOG2051|consen 909 DDGSDEDENEEEEPDT 924 (1128)
T ss_pred cccccccccccCCCCC
Confidence 5555555555555443
No 48
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=25.32 E-value=2.2e+02 Score=26.27 Aligned_cols=52 Identities=13% Similarity=0.103 Sum_probs=32.3
Q ss_pred CCCCcccCCCCCHHHHHHHhhH---HhhcC--------C-HHHHHHHHhhccCCChHHHHHHHHHH
Q 019751 45 GTAPFLQLPHFTEAVIKKIARK---ELRDM--------S-LQDRAELLSQVGGFSSTEVQDVEMVL 98 (336)
Q Consensus 45 ~~spLlQLPh~~~e~v~kl~~k---~L~~~--------~-~~er~~lL~~~~gls~~q~~~v~~v~ 98 (336)
+...|.++|++.+..++++--. ++... . .+....|+. +|+++.++..+.+-+
T Consensus 105 D~~~L~~vpGIGkKtAeRIIlELkdKl~~~~~~~~~~~~~~ea~~AL~~--LGy~~~ea~~al~~v 168 (196)
T PRK13901 105 DIELISKVKGIGNKMAGKIFLKLRGKLVKNDELESSLFKFKELEQSIVN--MGFDRKLVNSAIKEI 168 (196)
T ss_pred CHHHHhhCCCCCHHHHHHHHHHHHHhhccccccccCcccHHHHHHHHHH--cCCCHHHHHHHHHHH
Confidence 5678999999998888775432 33111 1 133344444 899887777665533
No 49
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=24.74 E-value=1.1e+02 Score=34.30 Aligned_cols=48 Identities=23% Similarity=0.360 Sum_probs=38.8
Q ss_pred CcccCCCCCHHHHHHHhhH-----HhhcCCHHHHHHHHhhccCCChHHHHHHHHHHhc
Q 019751 48 PFLQLPHFTEAVIKKIARK-----ELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQM 100 (336)
Q Consensus 48 pLlQLPh~~~e~v~kl~~k-----~L~~~~~~er~~lL~~~~gls~~q~~~v~~v~~~ 100 (336)
-|+.||++++..+.++-.+ +|++++.+++..+++ +++.++.+.+|++.
T Consensus 758 ~L~~lPgI~~~~a~~ll~~f~si~~l~~as~eeL~~~iG-----~~~~A~~i~~fl~~ 810 (814)
T TIGR00596 758 FLLKLPGVTKKNYRNLRKKVKSIRELAKLSQNELNELIG-----DEEAAKRLYDFLRT 810 (814)
T ss_pred HHHHCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHHHHhC-----CHHHHHHHHHHhcc
Confidence 3778999999888777665 889999999887654 47788999988875
No 50
>PF11705 RNA_pol_3_Rpc31: DNA-directed RNA polymerase III subunit Rpc31; InterPro: IPR024661 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA polymerase III-specific, and form the functionally distinct groups: (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in Saccharomyces cerevisiae and Homo sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain []. This entry represents the Rpc31 subunit.
Probab=23.55 E-value=39 Score=31.49 Aligned_cols=40 Identities=30% Similarity=0.540 Sum_probs=0.0
Q ss_pred ccccCCCCccCCCCCcccccccccCCcCCcccccchhhhh
Q 019751 270 IVSEEGPIVEDGAEEEEEDEEEEYDDYESEYSEDEEDERD 309 (336)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 309 (336)
+.......++++-++.++++++++++.+.+|.|||+++.+
T Consensus 167 k~~~~~~~d~~~~~e~~~eeee~eee~dee~~dee~e~~~ 206 (233)
T PF11705_consen 167 KEKEAEDEDEEEEDEEEEEEEEDEEEEDEEFEDEEDEDDD 206 (233)
T ss_pred hhhhcccccccccccccccccccccccccccchhhhccCC
No 51
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=23.54 E-value=37 Score=37.20 Aligned_cols=10 Identities=60% Similarity=0.800 Sum_probs=3.9
Q ss_pred ccCCCCCccc
Q 019751 278 VEDGAEEEEE 287 (336)
Q Consensus 278 ~~~~~~~~~~ 287 (336)
+++|.+.+||
T Consensus 209 dd~~m~~~Ee 218 (822)
T KOG2141|consen 209 DDDGMEGEEE 218 (822)
T ss_pred hccCCccccc
Confidence 3334443333
No 52
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.52 E-value=50 Score=30.31 Aligned_cols=24 Identities=25% Similarity=0.496 Sum_probs=11.4
Q ss_pred cCCCCCcccccccccCCcCCcccc
Q 019751 279 EDGAEEEEEDEEEEYDDYESEYSE 302 (336)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~s~~~~ 302 (336)
+|+..++++++++...|+|-+..|
T Consensus 193 ~DDd~d~d~D~eD~~gD~e~~~ed 216 (227)
T KOG3241|consen 193 HDDDSDPDSDEEDNVGDDEHDLED 216 (227)
T ss_pred cccccCCccccccccCcccccccc
Confidence 334444444444444455555533
No 53
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=23.45 E-value=60 Score=35.33 Aligned_cols=28 Identities=18% Similarity=0.029 Sum_probs=13.3
Q ss_pred EEEEEEcCCCCc------eeEEEEEEcCCCcccc
Q 019751 222 VMGKIQAPAEGN------YNLTCYCLCDSWLGCD 249 (336)
Q Consensus 222 v~l~F~aP~~G~------~~l~l~viSDsYiG~D 249 (336)
+.++.++|..|- -.+.+.--.||.+-+|
T Consensus 793 i~~~~~fr~lgF~GVPfRs~V~~~pTtdCLVqL~ 826 (1001)
T COG5406 793 IEFKVQFRKLGFYGVPFRSSVMIKPTTDCLVQLD 826 (1001)
T ss_pred eEEeeechhccccCCccccceeeecchhheeecc
Confidence 445555554332 2333444456666555
No 54
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=23.13 E-value=70 Score=33.49 Aligned_cols=39 Identities=3% Similarity=-0.135 Sum_probs=28.0
Q ss_pred EEEEcC-CCCceeEEEEEEcCCCcccceEEEEEEEeeccC
Q 019751 224 GKIQAP-AEGNYNLTCYCLCDSWLGCDKRTNLKVKILKRT 262 (336)
Q Consensus 224 l~F~aP-~~G~~~l~l~viSDsYiG~D~~~~i~l~V~~~~ 262 (336)
++|++| -.++..+.+.+++..|+|.+.--.|.+-+..-+
T Consensus 512 i~~dv~pvd~T~~~ql~~~ap~~vg~f~~~~ivm~t~d~~ 551 (610)
T COG5407 512 IQGDVAPVDKTGGKQLIVHAPFMVGAFSVKWIVMLTVDNV 551 (610)
T ss_pred cccccCccccccceeeeecCchhhccceeeeEEEEeechh
Confidence 344444 346677888999999999888877776666655
No 55
>PTZ00035 Rad51 protein; Provisional
Probab=21.49 E-value=1.6e+02 Score=29.12 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=39.7
Q ss_pred CcccC--CCCCHHHHHHHhhH------HhhcCCHHHHHHHHhhccCCChHHHHHHHHHHhcCCc
Q 019751 48 PFLQL--PHFTEAVIKKIARK------ELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPS 103 (336)
Q Consensus 48 pLlQL--Ph~~~e~v~kl~~k------~L~~~~~~er~~lL~~~~gls~~q~~~v~~v~~~lP~ 103 (336)
+|-.| |.+++..+++++.. +|...++.++.++ +|++...+.++.+.++.+..
T Consensus 22 ~~~~l~~~g~~~~~~~kL~~~g~~t~~~~~~~~~~~L~~~----~gis~~~~~~i~~~~~~~~~ 81 (337)
T PTZ00035 22 EIEKLQSAGINAADIKKLKEAGICTVESVAYATKKDLCNI----KGISEAKVEKIKEAASKLVP 81 (337)
T ss_pred cHHHHhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHh----hCCCHHHHHHHHHHHHHhcc
Confidence 34444 78999999999875 7777788877665 45999988888888887754
No 56
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=21.47 E-value=50 Score=34.64 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=8.3
Q ss_pred eeEEEEEEcCCCcccc
Q 019751 234 YNLTCYCLCDSWLGCD 249 (336)
Q Consensus 234 ~~l~l~viSDsYiG~D 249 (336)
|-.-+=|-+|-|-|..
T Consensus 170 ~gmLlPCg~D~F~GvE 185 (615)
T KOG3540|consen 170 YGMLLPCGLDMFRGVE 185 (615)
T ss_pred ccceeccccccccCce
Confidence 3444555556665543
No 57
>PHA02608 67 prohead core protein; Provisional
Probab=21.17 E-value=50 Score=26.18 Aligned_cols=9 Identities=44% Similarity=0.302 Sum_probs=4.1
Q ss_pred cccCCCCcc
Q 019751 271 VSEEGPIVE 279 (336)
Q Consensus 271 ~~~~~~~~~ 279 (336)
|-++|+..+
T Consensus 43 v~iEGEe~e 51 (80)
T PHA02608 43 VMIEGEEPE 51 (80)
T ss_pred HhhcCCCCc
Confidence 445554433
No 58
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=21.16 E-value=1.8e+02 Score=27.89 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=34.6
Q ss_pred cccCCCCCHHHHHHHhhH------HhhcCCHHHHHHHHhhccCCChHHHHHHHHHHh
Q 019751 49 FLQLPHFTEAVIKKIARK------ELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQ 99 (336)
Q Consensus 49 LlQLPh~~~e~v~kl~~k------~L~~~~~~er~~lL~~~~gls~~q~~~v~~v~~ 99 (336)
|.++|++.+..++++... +|..++++++..+++ ++.+.+..+.+.+.
T Consensus 1 l~~i~gig~~~~~~L~~~Gi~ti~dl~~~~~~~L~~~~g----~~~~~a~~l~~~~~ 53 (310)
T TIGR02236 1 LEDLPGVGPATAEKLREAGYDTFEAIAVASPKELSEIAG----ISEGTAAKIIQAAR 53 (310)
T ss_pred CcccCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHhccC----CCHHHHHHHHHHHH
Confidence 457899999999888775 777788888766644 66666666666665
No 59
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=20.94 E-value=55 Score=33.35 Aligned_cols=41 Identities=37% Similarity=0.519 Sum_probs=0.0
Q ss_pred ccCCCCccCCCCCccccc---ccccCCcCCcccccchhhhhhcc
Q 019751 272 SEEGPIVEDGAEEEEEDE---EEEYDDYESEYSEDEEDERDTKK 312 (336)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~~ 312 (336)
.....+..|+.+.+||++ .++.|-|.||+.++|||+.+..+
T Consensus 257 ~~sS~d~~D~a~~EEeD~~k~~d~sd~~sse~~eneed~Ded~e 300 (542)
T KOG0699|consen 257 APSSSDGVDGAATEEEDEVKSPDDSDAESSEFVENEEDDDEDAE 300 (542)
T ss_pred CCCcccccccccccccccccCCcccccccchhcccccccccccc
Done!