Query 019751
Match_columns 336
No_of_seqs 173 out of 700
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 06:34:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019751.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019751hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3im1_A Protein SNU246, PRE-mRN 100.0 9E-44 3.1E-48 343.2 23.4 195 6-259 128-328 (328)
2 2q0z_X Protein Pro2281; SEC63, 100.0 2.4E-42 8.3E-47 334.7 25.8 197 6-262 131-333 (339)
3 4f92_B U5 small nuclear ribonu 100.0 7.7E-33 2.6E-37 313.9 23.4 193 5-257 1526-1724(1724)
4 4f92_B U5 small nuclear ribonu 99.8 5E-19 1.7E-23 201.2 21.2 190 6-263 696-892 (1724)
5 2p6r_A Afuhel308 helicase; pro 98.2 2.8E-07 9.6E-12 95.9 0.8 82 5-109 605-692 (702)
6 2zj8_A DNA helicase, putative 98.2 1.3E-06 4.3E-11 91.2 5.6 85 4-103 614-704 (720)
7 2va8_A SSO2462, SKI2-type heli 97.8 1.7E-05 5.9E-10 82.4 5.2 83 4-104 625-714 (715)
8 2ca6_A RAN GTPase-activating p 77.4 0.62 2.1E-05 43.7 0.8 13 92-104 177-189 (386)
9 1wcn_A Transcription elongatio 75.8 2.1 7E-05 31.8 3.2 52 46-101 6-63 (70)
10 2a1j_A DNA repair endonuclease 59.8 12 0.00042 26.7 4.4 49 46-100 3-57 (63)
11 1z00_B DNA repair endonuclease 58.8 15 0.00051 28.1 5.0 48 46-99 17-70 (84)
12 2kz3_A Putative uncharacterize 53.4 28 0.00094 26.6 5.7 47 50-100 7-59 (83)
13 1ci4_A Protein (barrier-TO-aut 47.0 40 0.0014 26.3 5.7 57 45-101 16-84 (89)
14 2p9r_A Alpha-2-M, alpha-2-macr 43.9 1E+02 0.0034 23.2 10.1 33 222-260 63-98 (102)
15 2i1q_A DNA repair and recombin 43.4 25 0.00087 32.1 4.9 49 48-100 4-58 (322)
16 3isy_A Bsupi, intracellular pr 37.5 1.6E+02 0.0056 23.8 9.4 43 120-170 16-58 (120)
17 2lpe_A Kinase suppressor of RA 37.4 58 0.002 27.6 5.7 55 46-101 77-144 (149)
18 2yrl_A KIAA1837 protein; PKD d 34.8 94 0.0032 23.9 6.3 38 223-262 60-97 (102)
19 2wnv_B C1Q chain B, complement 34.7 48 0.0016 26.9 4.8 21 224-244 41-61 (136)
20 2r5o_A Putative ATP binding co 34.0 52 0.0018 28.0 5.1 41 221-261 125-171 (188)
21 1mg7_A Early switch protein XO 30.9 50 0.0017 31.9 4.7 93 152-272 292-384 (417)
22 2dkz_A Hypothetical protein LO 30.1 74 0.0025 24.5 4.7 45 53-101 30-79 (84)
23 2wnv_A C1Q chain A, complement 30.0 41 0.0014 27.2 3.5 20 224-243 38-57 (134)
24 1pzn_A RAD51, DNA repair and r 29.5 82 0.0028 29.5 6.1 51 46-100 34-90 (349)
25 1kft_A UVRC, excinuclease ABC 29.4 39 0.0013 24.6 3.0 50 46-99 23-77 (78)
26 2hr0_A Complement C3 beta chai 29.0 4.4E+02 0.015 26.4 11.8 43 118-175 117-159 (645)
27 2a1j_B DNA excision repair pro 27.4 93 0.0032 23.2 5.0 48 48-99 33-85 (91)
28 1z00_A DNA excision repair pro 27.1 90 0.0031 23.1 4.8 49 48-100 20-73 (89)
29 2wnv_C C1Q chain C, complement 26.7 56 0.0019 26.3 3.8 21 224-244 42-62 (131)
30 2zd7_A VPS75, vacuolar protein 25.3 17 0.00059 33.5 0.4 7 145-151 113-119 (264)
31 2ayu_A Nucleosome assembly pro 25.3 14 0.00048 36.4 -0.2 8 74-81 133-140 (417)
32 2vzp_A Aocbm35, EXO-beta-D-glu 24.0 88 0.003 24.5 4.4 34 221-256 40-73 (127)
33 3jqw_A COLH protein, collagena 21.7 1.2E+02 0.0041 24.4 4.8 23 221-243 84-106 (121)
34 4fxk_A Complement C4 beta chai 21.3 6E+02 0.02 25.1 11.8 40 117-170 130-169 (656)
35 1x2i_A HEF helicase/nuclease; 20.8 1.1E+02 0.0038 21.3 4.0 49 48-100 15-68 (75)
36 2bgw_A XPF endonuclease; hydro 20.7 1.2E+02 0.004 26.3 4.9 49 48-100 163-216 (219)
37 2z43_A DNA repair and recombin 20.4 21 0.00073 32.9 0.0 52 45-100 10-67 (324)
No 1
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=100.00 E-value=9e-44 Score=343.16 Aligned_cols=195 Identities=23% Similarity=0.472 Sum_probs=178.1
Q ss_pred chhhccCCHHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCcccCCCCCHHHHHHHhhH------HhhcCCHHHHHHH
Q 019751 6 RTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK------ELRDMSLQDRAEL 79 (336)
Q Consensus 6 ~~aa~~GwL~~al~~m~L~Q~IvQA~W~~~~~~~~~~~~~~spLlQLPh~~~e~v~kl~~k------~L~~~~~~er~~l 79 (336)
..++.+||++ ++++|+|+|||+||+|+ .++||+|||||+...++++..+ +|.+|+++++..+
T Consensus 128 di~~~~g~~~-~~~~l~L~q~i~q~~w~-----------~~~pL~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~l 195 (328)
T 3im1_A 128 DILSANGYLN-ATTAMDLAQMLIQGVWD-----------VDNPLRQIPHFNNKILEKCKEINVETVYDIMALEDEERDEI 195 (328)
T ss_dssp HHHHHTTBTT-HHHHHHHHHHHHHTSCT-----------TSCGGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHH
T ss_pred HHHHcCCcHH-HHHHHHHHHHHHhhcCC-----------CCCceeCCCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHHhH
Confidence 4678999999 99999999999999999 7899999999999999988764 8899999999988
Q ss_pred HhhccCCChHHHHHHHHHHhcCCceeEEEEEEecCCccccCCCeEEEEEeeeeeccCCCCCCCccCCCCCCCCcccEEEE
Q 019751 80 LSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFL 159 (336)
Q Consensus 80 L~~~~gls~~q~~~v~~v~~~lP~I~v~~~~~V~ge~~It~g~~vtl~~~V~L~R~n~~~~~~v~aP~FP~~K~E~Wwvv 159 (336)
|+ +++.+++++.++|++||.|+|+ ++|+|++.|++|+.++|+ |+|+|.+......+||||||+.|.|+||||
T Consensus 196 l~----~~~~~~~~v~~~~~~~P~l~v~--~~v~~~~~i~~~~~~~l~--v~l~~~~~~~~~~~~ap~fp~~k~e~ww~~ 267 (328)
T 3im1_A 196 LT----LTDSQLAQVAAFVNNYPNVELT--YSLNNSDSLISGVKQKIT--IQLTRDVEPENLQVTSEKYPFDKLESWWLV 267 (328)
T ss_dssp CC----CCHHHHHHHHHHHHHCCCEEEE--EEETTGGGCCTTSEEEEE--EEEEESSCCSCCBCCCSSCCBCCBCCEEEE
T ss_pred hC----CCHHHHHHHHHHHHhCCCEEEE--EEecCCCcccCCCeEEEE--EEEEECCCCCCCcEECCCCCCCccCCEEEE
Confidence 65 8999999999999999999976 678899899999999999 999998766667899999999999999999
Q ss_pred EEECCCCeEEEEeeeeeccchhHHhhhhhhhhhhhcCCCCccchhhHHHHHHHhhhhcCceeEEEEEEcCCCCceeEEEE
Q 019751 160 LADSVSNNVWFSQKVSFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNLTCY 239 (336)
Q Consensus 160 lgD~~~n~Ll~~krv~~~~~~~~~~~~~k~i~~~~~~~g~~~k~~~~~~~~~~~~~k~~~~~v~l~F~aP~~G~~~l~l~ 239 (336)
|||+++|+|+++||+++.+. .+.++++|++|.+|+|+|+|+
T Consensus 268 v~d~~~~~l~~~kr~~~~~~---------------------------------------~~~~~~~f~~p~~g~~~~~v~ 308 (328)
T 3im1_A 268 LGEVSKKELYAIKKVTLNKE---------------------------------------TQQYELEFDTPTSGKHNLTIW 308 (328)
T ss_dssp EEEGGGTEEEEEEEECCCSS---------------------------------------EEEEEEEEECCCSEEEEEEEE
T ss_pred EEECCCCeEEEEeeeccccc---------------------------------------ceEEEEEEEcCCCCcEEEEEE
Confidence 99999999999999988541 235789999998899999999
Q ss_pred EEcCCCcccceEEEEEEEee
Q 019751 240 CLCDSWLGCDKRTNLKVKIL 259 (336)
Q Consensus 240 viSDsYiG~D~~~~i~l~V~ 259 (336)
||||+|+|||++++|+|+|.
T Consensus 309 ~vsD~ylG~d~~~~~~l~V~ 328 (328)
T 3im1_A 309 CVCDSYLDADKELSFEINVK 328 (328)
T ss_dssp EEESSCSSCCEEEEEEEEEC
T ss_pred EEecCCcceeEEEEEEEEeC
Confidence 99999999999999999984
No 2
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=100.00 E-value=2.4e-42 Score=334.73 Aligned_cols=197 Identities=28% Similarity=0.524 Sum_probs=178.2
Q ss_pred chhhccCCHHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCcccCCCCCHHHHHHHhhH------HhhcCCHHHHHHH
Q 019751 6 RTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK------ELRDMSLQDRAEL 79 (336)
Q Consensus 6 ~~aa~~GwL~~al~~m~L~Q~IvQA~W~~~~~~~~~~~~~~spLlQLPh~~~e~v~kl~~k------~L~~~~~~er~~l 79 (336)
..++.+||+.+++++|+|+|||+||+|+ .++||+|||||+.+.++++..+ +|.+|+++++..+
T Consensus 131 di~~~~g~~~~~~~~l~L~q~i~q~~w~-----------~~~pL~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~l 199 (339)
T 2q0z_X 131 DVLSSNGWLSPALAAMELAQMVTQAMWS-----------KDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNAL 199 (339)
T ss_dssp HHHHHTTBHHHHHHHHHHHHHHHHTCCT-----------TSCGGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcCC-----------CCCceecCCCCCHHHHHHHHhcCCCCHHHHHhCCHHHHHHH
Confidence 4678899999999999999999999999 7899999999999999998764 8999999999999
Q ss_pred HhhccCCChHHHHHHHHHHhcCCceeEEEEEEecCCccccCCCeEEEEEeeeeeccCCCCCCCccCCCCCCCCcccEEEE
Q 019751 80 LSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFL 159 (336)
Q Consensus 80 L~~~~gls~~q~~~v~~v~~~lP~I~v~~~~~V~ge~~It~g~~vtl~~~V~L~R~n~~~~~~v~aP~FP~~K~E~Wwvv 159 (336)
|+ +++.+++++.+++++||.|+|+ ++|.+++.|++|+.++|+ |+++|.+. ....+||||||+.|.|+||+|
T Consensus 200 l~----l~~~~~~~i~~~~~~~P~l~v~--~~v~~~~~i~~~~~~~l~--v~l~~~~~-~~~~v~aP~fp~~k~e~wwi~ 270 (339)
T 2q0z_X 200 LQ----LTDSQIADVARFCNRYPNIELS--YEVVDKDSIRSGGPVVVL--VQLEREEE-VTGPVIAPLFPQKREEGWWVV 270 (339)
T ss_dssp HC----CCHHHHHHHHHHHTTSCCEEEE--EEETTGGGCBTTSEEEEE--EEEEECSS-CCSSCCCTTCSSCCCCCEEEE
T ss_pred HC----CCHHHHHHHHHHHHhCCcEEEE--EEEccCccccCCCcEEEE--EEEEECCC-CCCceeCCCCCCCCCCcEEEE
Confidence 86 8899999999999999999975 678888899999999999 89988753 345899999999999999999
Q ss_pred EEECCCCeEEEEeeeeeccchhHHhhhhhhhhhhhcCCCCccchhhHHHHHHHhhhhcCceeEEEEEEcCCCCceeEEEE
Q 019751 160 LADSVSNNVWFSQKVSFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNLTCY 239 (336)
Q Consensus 160 lgD~~~n~Ll~~krv~~~~~~~~~~~~~k~i~~~~~~~g~~~k~~~~~~~~~~~~~k~~~~~v~l~F~aP~~G~~~l~l~ 239 (336)
|+|+++|+|++++|+++.+. ..++++|++|.+|.|+|+|+
T Consensus 271 v~d~~~~~ll~~~r~~l~~~----------------------------------------~~~~l~f~~P~~g~~~~~v~ 310 (339)
T 2q0z_X 271 IGDAKSNSLISIKRLTLQQK----------------------------------------AKVKLDFVAPATGAHNYTLY 310 (339)
T ss_dssp EEETTTTEEEEEEEECCSSE----------------------------------------EEEEEEEECCSSEEEEEEEE
T ss_pred EEECCCCEEEEEEEEecccc----------------------------------------eEEEEEEECCCCCCeeEEEE
Confidence 99999999999999987541 24679999999999999999
Q ss_pred EEcCCCcccceEEEEEEEeeccC
Q 019751 240 CLCDSWLGCDKRTNLKVKILKRT 262 (336)
Q Consensus 240 viSDsYiG~D~~~~i~l~V~~~~ 262 (336)
|+||+|+|||++++|+|+|.++.
T Consensus 311 ~vSD~ylG~D~~~~i~~~v~~~~ 333 (339)
T 2q0z_X 311 FMSDAYMGCDQEYKFSVDVKEAE 333 (339)
T ss_dssp EEESSCSSCCEEEEEEEEEBCC-
T ss_pred EEcccccCcceEEEEEEEEecCc
Confidence 99999999999999999998654
No 3
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=7.7e-33 Score=313.87 Aligned_cols=193 Identities=28% Similarity=0.527 Sum_probs=173.5
Q ss_pred cchhhccCCHHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCcccCCCCCHHHHHHHhhH------HhhcCCHHHHHH
Q 019751 5 PRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK------ELRDMSLQDRAE 78 (336)
Q Consensus 5 ~~~aa~~GwL~~al~~m~L~Q~IvQA~W~~~~~~~~~~~~~~spLlQLPh~~~e~v~kl~~k------~L~~~~~~er~~ 78 (336)
...+...||+.+++.+|+|+|||.||+|. +++||+|||||+...++++... +|.+++++++..
T Consensus 1526 ~d~~~~~g~~~~~~~~~~l~q~l~~~~w~-----------~~~~L~qip~i~~~~ar~l~~~gi~t~~dl~~~~~~~~~~ 1594 (1724)
T 4f92_B 1526 VDVLSSNGWLSPALAAMELAQMVTQAMWS-----------KDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNA 1594 (1724)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHHHTTCCT-----------TSCGGGGSTTCCHHHHHHHHHHTCCSHHHHHSSCHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHhCCCc-----------CCcCEecCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHH
Confidence 35688999999999999999999999998 7899999999999999998765 889999999988
Q ss_pred HHhhccCCChHHHHHHHHHHhcCCceeEEEEEEecCCccccCCCeEEEEEeeeeeccCCCCCCCccCCCCCCCCcccEEE
Q 019751 79 LLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWF 158 (336)
Q Consensus 79 lL~~~~gls~~q~~~v~~v~~~lP~I~v~~~~~V~ge~~It~g~~vtl~~~V~L~R~n~~~~~~v~aP~FP~~K~E~Wwv 158 (336)
+|+ +++.++.++.++|++||+|+|+ +++.+.+.+..|..++++ |+++|.+.. ...+|||+||+.|.|+||+
T Consensus 1595 ll~----~~~~~~~~i~~~~~~~P~i~~~--~~~~~~~~~~~~~~~~~~--v~~~~~~~~-~~~~~~~~~p~~k~e~w~~ 1665 (1724)
T 4f92_B 1595 LLQ----LTDSQIADVARFCNRYPNIELS--YEVVDKDSIRSGGPVVVL--VQLEREEEV-TGPVIAPLFPQKREEGWWV 1665 (1724)
T ss_dssp SSC----CCHHHHHHHHHHHHHSCCEEEE--EEEETSSSCCTTSEEEEE--EEEEESSCC-CSCCCCTTSCSCCCCCEEE
T ss_pred HHC----CChHHHHHHHHHHHhCCceEEE--EEEecCccccCCCeEEEE--EEEEecCCC-CCeeecCCCCCCCccCEEE
Confidence 876 8999999999999999999966 566677789999999999 999997643 3478999999999999999
Q ss_pred EEEECCCCeEEEEeeeeeccchhHHhhhhhhhhhhhcCCCCccchhhHHHHHHHhhhhcCceeEEEEEEcCCCCceeEEE
Q 019751 159 LLADSVSNNVWFSQKVSFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNLTC 238 (336)
Q Consensus 159 vlgD~~~n~Ll~~krv~~~~~~~~~~~~~k~i~~~~~~~g~~~k~~~~~~~~~~~~~k~~~~~v~l~F~aP~~G~~~l~l 238 (336)
+|||.++|+|+++||+++.+. ..+++.|.+|.+|.+.|+|
T Consensus 1666 vvg~~~~~~l~~~kr~~~~~~----------------------------------------~~~~l~f~~p~~g~~~~~~ 1705 (1724)
T 4f92_B 1666 VIGDAKSNSLISIKRLTLQQK----------------------------------------AKVKLDFVAPATGAHNYTL 1705 (1724)
T ss_dssp EEEETTTTEEEEEEEECCSSE----------------------------------------EEEEEEEECCSSSCEEEEE
T ss_pred EEEECCCCeEEEEEEEecCCC----------------------------------------ceEEEEEEeCCCCceeEEE
Confidence 999999999999999988641 2477999999999999999
Q ss_pred EEEcCCCcccceEEEEEEE
Q 019751 239 YCLCDSWLGCDKRTNLKVK 257 (336)
Q Consensus 239 ~viSDsYiG~D~~~~i~l~ 257 (336)
|||||||+||||++.+.++
T Consensus 1706 ~~~~d~y~g~d~~~~~~~~ 1724 (1724)
T 4f92_B 1706 YFMSDAYMGCDQEYKFSVD 1724 (1724)
T ss_dssp EEEESSCSSCCEEEEEEEC
T ss_pred EEEecCccccceeEEEecC
Confidence 9999999999999998863
No 4
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.81 E-value=5e-19 Score=201.21 Aligned_cols=190 Identities=18% Similarity=0.296 Sum_probs=159.0
Q ss_pred chhhccCCHHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCcccCCCCCHHHHHHHhhH-----HhhcCCHHHHHHHH
Q 019751 6 RTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK-----ELRDMSLQDRAELL 80 (336)
Q Consensus 6 ~~aa~~GwL~~al~~m~L~Q~IvQA~W~~~~~~~~~~~~~~spLlQLPh~~~e~v~kl~~k-----~L~~~~~~er~~lL 80 (336)
+.+..+||...+..++.|++||.+++|. ..+||+|||++....++++..+ +|.+|++.++..++
T Consensus 696 ei~~~~~~~~~~~~~l~l~k~i~~~~w~-----------~~~~L~q~~~i~~~~~~~l~~~~~~~~~l~~~~~~~l~~~~ 764 (1724)
T 4f92_B 696 EIVLNRGWAQLTDKTLNLCKMIDKRMWQ-----------SMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELI 764 (1724)
T ss_dssp HHHHHTTBHHHHHHHHHHHHHHHHTSCT-----------TSCGGGGSTTSCHHHHHHHHTSSCCGGGGGGCCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhCCCC-----------CCCceecCCCCCHHHHHHHHhcCCCHHHHHhCCHHHHHHHH
Confidence 4678899999999999999999999999 6899999999999999998876 89999999999998
Q ss_pred hhccCCChHHHHHHHHHHhcCCceeEEEEEEecCCccccCCCeEEEEEeeeeeccCCCCCCCccCCCCCCCCcccEEEEE
Q 019751 81 SQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLL 160 (336)
Q Consensus 81 ~~~~gls~~q~~~v~~v~~~lP~I~v~~~~~V~ge~~It~g~~vtl~~~V~L~R~n~~~~~~v~aP~FP~~K~E~Wwvvl 160 (336)
+ .+.....+.+.+++||.++|++.++ +|+. +.+.+. +++++. +.|.++++. +.|+||+||
T Consensus 765 ~-----~~~~g~~i~~~~~~~P~~~~~~~~~-----p~~~-~~~~~~--~~~~~~------~~w~~~~h~-~~~~~~~~v 824 (1724)
T 4f92_B 765 R-----MPKMGKTIHKYVHLFPKLELSVHLQ-----PITR-STLKVE--LTITPD------FQWDEKVHG-SSEAFWILV 824 (1724)
T ss_dssp T-----CSTTHHHHHHHHTTSCCEEEEEEEE-----ESSS-SEEEEE--EEEEEC------SCCCTTTTT-TEEEEEEEE
T ss_pred C-----CchHHHHHHHHHHHCCCceEEEEEE-----ecCC-ceEEEE--EEEeec------cccchhhcC-CceeEEEEE
Confidence 7 3567899999999999999887766 4555 377777 766642 445555554 679999999
Q ss_pred EECCCCeEEEEeeeeeccchhHHhhhhhhhhhhhcCCCCccchhhHHHHHHHhhhhcCceeEEEEEEcC--CCCceeEEE
Q 019751 161 ADSVSNNVWFSQKVSFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAP--AEGNYNLTC 238 (336)
Q Consensus 161 gD~~~n~Ll~~krv~~~~~~~~~~~~~k~i~~~~~~~g~~~k~~~~~~~~~~~~~k~~~~~v~l~F~aP--~~G~~~l~l 238 (336)
+|..++.|++++++.+.++.. .....+.|++| .|.+.+|.|
T Consensus 825 ~d~~~~~i~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~p~~~~~p~~~~i 867 (1724)
T 4f92_B 825 EDVDSEVILHHEYFLLKAKYA-------------------------------------QDEHLITFFVPVFEPLPPQYFI 867 (1724)
T ss_dssp ECTTSCBEEEEEEEEEEGGGT-------------------------------------TSCEEEEEEEECCSSCCSEEEE
T ss_pred EecCCCeEEEEEEEEeeeecc-------------------------------------CCceEEEEEEECCCCCCCeEEE
Confidence 999999999999999876210 11245788888 788899999
Q ss_pred EEEcCCCcccceEEEEEEEeeccCc
Q 019751 239 YCLCDSWLGCDKRTNLKVKILKRTR 263 (336)
Q Consensus 239 ~viSDsYiG~D~~~~i~l~V~~~~~ 263 (336)
+++||.|+||+..++|.|+-+-.|.
T Consensus 868 ~~~sd~w~~~~~~~~~~~~~~~~p~ 892 (1724)
T 4f92_B 868 RVVSDRWLSCETQLPVSFRHLILPE 892 (1724)
T ss_dssp EEEESSSTTCEEEEEEECTTCCCCC
T ss_pred EEEEccccCCCceeeeccccccCCC
Confidence 9999999999999999998666654
No 5
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.17 E-value=2.8e-07 Score=95.89 Aligned_cols=82 Identities=18% Similarity=0.204 Sum_probs=66.1
Q ss_pred cchhhccCCHHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCcccCCCCCHHHHHHHhhH------HhhcCCHHHHHH
Q 019751 5 PRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK------ELRDMSLQDRAE 78 (336)
Q Consensus 5 ~~~aa~~GwL~~al~~m~L~Q~IvQA~W~~~~~~~~~~~~~~spLlQLPh~~~e~v~kl~~k------~L~~~~~~er~~ 78 (336)
-+.|...||. .+++|+|||.||+|. ..+||+|||||+...++++... +|.+++ .++..
T Consensus 605 ~~i~~~~g~~----~l~~l~~ri~~gv~~-----------~~~~L~qlp~v~~~~ar~l~~~g~~s~~~l~~~~-~~l~~ 668 (702)
T 2p6r_A 605 NRIAEEVGNT----SVSGLTERIKHGVKE-----------ELLELVRIRHIGRVRARKLYNAGIRNAEDIVRHR-EKVAS 668 (702)
T ss_dssp HHHHHHTTCC----SSTTHHHHHHHTCCG-----------GGHHHHTSTTCCHHHHHHHHTTTCCSHHHHHHTH-HHHHH
T ss_pred HHHHHHcCHH----HHHHHHHHHHcCCCc-----------chHhhhcCCCCCHHHHHHHHHcCCCCHHHHHhhh-HHHHH
Confidence 4578889998 788999999999998 7899999999999999988765 777778 77777
Q ss_pred HHhhccCCChHHHHHHHHHHhcCCceeEEEE
Q 019751 79 LLSQVGGFSSTEVQDVEMVLQMMPSLTVEVT 109 (336)
Q Consensus 79 lL~~~~gls~~q~~~v~~v~~~lP~I~v~~~ 109 (336)
+|+ +.+++.+.+.+. +|.++|++.
T Consensus 669 ll~------~~~~~~i~~~~~-~p~~~~~~~ 692 (702)
T 2p6r_A 669 LIG------RGIAERVVEGIS-VKSLNPESA 692 (702)
T ss_dssp HHC------HHHHHHHHHHHH-HHC------
T ss_pred HhC------hhHHHHHHHhcC-CCccCcchh
Confidence 753 688999999999 999997644
No 6
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.17 E-value=1.3e-06 Score=91.22 Aligned_cols=85 Identities=12% Similarity=0.130 Sum_probs=68.8
Q ss_pred ccchhhccCCHHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCcccCCCCCHHHHHHHhhH------HhhcCCHHHHH
Q 019751 4 IPRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK------ELRDMSLQDRA 77 (336)
Q Consensus 4 ~~~~aa~~GwL~~al~~m~L~Q~IvQA~W~~~~~~~~~~~~~~spLlQLPh~~~e~v~kl~~k------~L~~~~~~er~ 77 (336)
+-+.|...||...+..+.+|+|||.||+|. ...||+|||||+...++++... +|..++++++.
T Consensus 614 ~~~i~~~~g~~~~~~~l~~l~~rl~~gv~~-----------e~~~L~qlp~v~~~rar~L~~~G~~s~~dl~~~~~~~l~ 682 (720)
T 2zj8_A 614 LKEIAKVLGAYEIVDYLETLRVRVKYGIRE-----------ELIPLMQLPLVGRRRARALYNSGFRSIEDISQARPEELL 682 (720)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHTCCG-----------GGGGGTTSTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHcCCCc-----------cchhhhhCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHH
Confidence 346788999986555555599999999999 7899999999999999988764 88889999988
Q ss_pred HHHhhccCCChHHHHHHHHHHhcCCc
Q 019751 78 ELLSQVGGFSSTEVQDVEMVLQMMPS 103 (336)
Q Consensus 78 ~lL~~~~gls~~q~~~v~~v~~~lP~ 103 (336)
.+ . ++.+++++++..++.++|.
T Consensus 683 ~~-~---~~~~~i~~~~~~~~~~~~~ 704 (720)
T 2zj8_A 683 KI-E---GIGVKTVEAIFKFLGKNVK 704 (720)
T ss_dssp TS-T---TCCHHHHHHHHHHHC----
T ss_pred Hh-H---hHHHHHHHHHHHhcccccc
Confidence 76 3 4899999999999999998
No 7
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=97.76 E-value=1.7e-05 Score=82.39 Aligned_cols=83 Identities=8% Similarity=0.045 Sum_probs=69.2
Q ss_pred ccchhhccCCHHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCcccCCCCCHHHHHHHhhH------HhhcCCHHHHH
Q 019751 4 IPRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK------ELRDMSLQDRA 77 (336)
Q Consensus 4 ~~~~aa~~GwL~~al~~m~L~Q~IvQA~W~~~~~~~~~~~~~~spLlQLPh~~~e~v~kl~~k------~L~~~~~~er~ 77 (336)
+.+.|..+||...+..+++|+|||.||+|+ ...||+|||||....++++... +|. +++.++.
T Consensus 625 ~~~i~~~~~~~~~~~~l~~l~~rl~~gv~~-----------e~~~L~qlp~i~~~rar~L~~~g~~s~~~l~-~~~~~l~ 692 (715)
T 2va8_A 625 AYHLSRELKLNEHADKLRILNLRVRDGIKE-----------ELLELVQISGVGRKRARLLYNNGIKELGDVV-MNPDKVK 692 (715)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTCCG-----------GGHHHHTSTTCCHHHHHHHHHTTCCSHHHHH-HCHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHcCCCh-----------hhcchhhCCCCCHHHHHHHHHcCCCCHHHHh-CCHHHHH
Confidence 346788999999999999999999999999 7899999999999999988765 777 7899988
Q ss_pred HHHhhccCCChHHHHHHHH-HHhcCCce
Q 019751 78 ELLSQVGGFSSTEVQDVEM-VLQMMPSL 104 (336)
Q Consensus 78 ~lL~~~~gls~~q~~~v~~-v~~~lP~I 104 (336)
.+|+ +++++.+.+ +...+|.+
T Consensus 693 ~~l~------~~~~~~i~~~~~~~~~~~ 714 (715)
T 2va8_A 693 NLLG------QKLGEKVVQEAARLLNRF 714 (715)
T ss_dssp HHHC------HHHHHHHHHHHHHHHC--
T ss_pred HHhC------hhHHHHHHHHHHHhhccC
Confidence 8863 567777777 66667765
No 8
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=77.37 E-value=0.62 Score=43.70 Aligned_cols=13 Identities=15% Similarity=0.084 Sum_probs=5.3
Q ss_pred HHHHHHHhcCCce
Q 019751 92 QDVEMVLQMMPSL 104 (336)
Q Consensus 92 ~~v~~v~~~lP~I 104 (336)
..+...+..+|.|
T Consensus 177 ~~l~~~l~~~~~L 189 (386)
T 2ca6_A 177 KEWAKTFQSHRLL 189 (386)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHHhCCCc
Confidence 3333344444444
No 9
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=75.83 E-value=2.1 Score=31.80 Aligned_cols=52 Identities=17% Similarity=0.341 Sum_probs=42.2
Q ss_pred CCCcccCCCCCHHHHHHHhhH------HhhcCCHHHHHHHHhhccCCChHHHHHHHHHHhcC
Q 019751 46 TAPFLQLPHFTEAVIKKIARK------ELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMM 101 (336)
Q Consensus 46 ~spLlQLPh~~~e~v~kl~~k------~L~~~~~~er~~lL~~~~gls~~q~~~v~~v~~~l 101 (336)
..+|++||+++...+.++... +|...+.+++..+ .|+++.++..+...++.+
T Consensus 6 ~~~l~~L~Gi~~~~~~kL~e~Gi~TvedlA~~~~~eL~~i----~gise~kA~~ii~aAr~~ 63 (70)
T 1wcn_A 6 ADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADI----EGLTDEKAGALIMAARNI 63 (70)
T ss_dssp CHHHHSSTTCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTS----SSCCHHHHHHHHHHHHHH
T ss_pred hhHHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHc----cCCCHHHHHHHHHHHHHc
Confidence 457999999999999999876 6777777776554 569999999999888763
No 10
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=59.78 E-value=12 Score=26.73 Aligned_cols=49 Identities=12% Similarity=0.264 Sum_probs=38.3
Q ss_pred CCCcccCCCCCHHHHHHHhhH-----HhhcCCHHHHHHHHhhccCCChHH-HHHHHHHHhc
Q 019751 46 TAPFLQLPHFTEAVIKKIARK-----ELRDMSLQDRAELLSQVGGFSSTE-VQDVEMVLQM 100 (336)
Q Consensus 46 ~spLlQLPh~~~e~v~kl~~k-----~L~~~~~~er~~lL~~~~gls~~q-~~~v~~v~~~ 100 (336)
.+.|..+|++.+...+++-.+ ++..++.+++.++++ .+. ++.+.++++.
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~~Fgs~~~i~~As~eeL~~vig------~~~~A~~I~~~l~~ 57 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG------NAANAKQLYDFIHT 57 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHHHCSSHHHHHTCCHHHHHHHHS------CHHHHHHHHHHHHC
T ss_pred HhHHHcCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHHcC------chHHHHHHHHHHhc
Confidence 467889999999877776655 888999999988854 355 7888888853
No 11
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=58.82 E-value=15 Score=28.05 Aligned_cols=48 Identities=13% Similarity=0.273 Sum_probs=38.0
Q ss_pred CCCcccCCCCCHHHHHHHhhH-----HhhcCCHHHHHHHHhhccCCChHH-HHHHHHHHh
Q 019751 46 TAPFLQLPHFTEAVIKKIARK-----ELRDMSLQDRAELLSQVGGFSSTE-VQDVEMVLQ 99 (336)
Q Consensus 46 ~spLlQLPh~~~e~v~kl~~k-----~L~~~~~~er~~lL~~~~gls~~q-~~~v~~v~~ 99 (336)
.+.|..+|++.+...+++-.+ +|..++.+++.++++ .+. ++.+..+++
T Consensus 17 ~s~L~~IpGIG~kr~~~LL~~FgSl~~i~~AS~eEL~~vig------~~~~A~~I~~~l~ 70 (84)
T 1z00_B 17 QDFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG------NAANAKQLYDFIH 70 (84)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHSSCHHHHHHSCHHHHHHHHS------CHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHHhC------chHHHHHHHHHHH
Confidence 357889999999877776665 889999999998865 344 788888875
No 12
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=53.39 E-value=28 Score=26.59 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=36.2
Q ss_pred ccCCCCCHHHHHHHhhH------HhhcCCHHHHHHHHhhccCCChHHHHHHHHHHhc
Q 019751 50 LQLPHFTEAVIKKIARK------ELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQM 100 (336)
Q Consensus 50 lQLPh~~~e~v~kl~~k------~L~~~~~~er~~lL~~~~gls~~q~~~v~~v~~~ 100 (336)
.-.|.+++.+++.+.++ +|...++.++.++++ ++-+.+..+.+.+..
T Consensus 7 ~~~p~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~----ls~~~v~~l~r~l~~ 59 (83)
T 2kz3_A 7 GLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCG----LSYKALVALRRVLLA 59 (83)
T ss_dssp TSSTTCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHT----CCHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhC----CCHHHHHHHHHHHHH
Confidence 33589999999999886 899999999888765 776666666655544
No 13
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=47.03 E-value=40 Score=26.27 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=45.4
Q ss_pred CCCCcccCCCCCHHHHHHHhhH----------HhhcC--CHHHHHHHHhhccCCChHHHHHHHHHHhcC
Q 019751 45 GTAPFLQLPHFTEAVIKKIARK----------ELRDM--SLQDRAELLSQVGGFSSTEVQDVEMVLQMM 101 (336)
Q Consensus 45 ~~spLlQLPh~~~e~v~kl~~k----------~L~~~--~~~er~~lL~~~~gls~~q~~~v~~v~~~l 101 (336)
++-++..||++.+...+++..+ +|+-| +.+.....|....|.+.+|..+..+.++.|
T Consensus 16 geK~V~evpGIG~~~~~~L~~~Gf~kAy~lLGqFL~l~kd~~~F~~WLk~~~gan~kq~~dc~~cl~eW 84 (89)
T 1ci4_A 16 GEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFREWLKDTCGANAKQSRDCFGCLREW 84 (89)
T ss_dssp TTCCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHHHHTTTCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCcccCCCcCHHHHHHHHHcCccHHHHHHHHHHHcCCCHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 5679999999999999998876 55555 666667777765689999999998887643
No 14
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=43.94 E-value=1e+02 Score=23.21 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=22.1
Q ss_pred EEEEEEcC---CCCceeEEEEEEcCCCcccceEEEEEEEeec
Q 019751 222 VMGKIQAP---AEGNYNLTCYCLCDSWLGCDKRTNLKVKILK 260 (336)
Q Consensus 222 v~l~F~aP---~~G~~~l~l~viSDsYiG~D~~~~i~l~V~~ 260 (336)
....|++| ..|.|.+.++.-+ | ......|+|.+
T Consensus 63 ~~~~f~Lp~~~~~G~y~i~~~~~~----~--~~~~~~F~Vee 98 (102)
T 2p9r_A 63 KQFSFPLSSEPFQGSYKVVVQKKS----G--GRTEHPFTVEE 98 (102)
T ss_dssp EEEEEECCSSCCCEEEEEEEECTT----S--CEEEEEEEECC
T ss_pred EEEEEECCCCCCCeeEEEEEEECC----C--CeEEEEEEEEE
Confidence 45789999 3688877776532 2 24666777765
No 15
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=43.37 E-value=25 Score=32.11 Aligned_cols=49 Identities=12% Similarity=0.243 Sum_probs=36.5
Q ss_pred CcccCCCCCHHHHHHHhhH------HhhcCCHHHHHHHHhhccCCChHHHHHHHHHHhc
Q 019751 48 PFLQLPHFTEAVIKKIARK------ELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQM 100 (336)
Q Consensus 48 pLlQLPh~~~e~v~kl~~k------~L~~~~~~er~~lL~~~~gls~~q~~~v~~v~~~ 100 (336)
+|..||++++..++++... ++...++.++..+ .|++.+.+.++...+..
T Consensus 4 ~~~~l~gi~~~~~~kL~~~gi~t~~~~~~~~~~~L~~~----~gis~~~a~~~i~~a~~ 58 (322)
T 2i1q_A 4 NLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDI----EGISEKAAAKMIMGARD 58 (322)
T ss_dssp -CTTSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTS----TTCCHHHHHHHHHHHHH
T ss_pred cHhhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHh----hCcCHHHHHHHHHHHHH
Confidence 7899999999999999876 6777776665433 56888777777766654
No 16
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=37.51 E-value=1.6e+02 Score=23.77 Aligned_cols=43 Identities=14% Similarity=0.187 Sum_probs=24.9
Q ss_pred CCCeEEEEEeeeeeccCCCCCCCccCCCCCCCCcccEEEEEEECCCCeEEE
Q 019751 120 EGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWF 170 (336)
Q Consensus 120 ~g~~vtl~~~V~L~R~n~~~~~~v~aP~FP~~K~E~WwvvlgD~~~n~Ll~ 170 (336)
.|+.+.+. ++++.... .+..=.|+-.+. +=++|-|...++||.
T Consensus 16 ~g~~v~~~--ltv~N~s~----~~v~l~f~Sgq~--~Df~v~d~~G~~Vwr 58 (120)
T 3isy_A 16 EPEQIKFN--MSLKNQSE----RAIEFQFSTGQK--FELVVYDSEHKERYR 58 (120)
T ss_dssp CSSCEEEE--EEEEECSS----SCEEEEESSSCC--EEEEEECTTCCEEEE
T ss_pred CCCeEEEE--EEEEcCCC----CcEEEEeCCCCE--EEEEEECCCCCEEEE
Confidence 45667777 77764322 233334555444 225666878889985
No 17
>2lpe_A Kinase suppressor of RAS 1; SAM domain, CC-SAM, coiled-coil, signaling protein, scaffold protein; NMR {Mus musculus}
Probab=37.43 E-value=58 Score=27.65 Aligned_cols=55 Identities=25% Similarity=0.411 Sum_probs=41.6
Q ss_pred CCCcccCCCC---------CHHHHHHHhhH----HhhcCCHHHHHHHHhhccCCChHHHHHHHHHHhcC
Q 019751 46 TAPFLQLPHF---------TEAVIKKIARK----ELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMM 101 (336)
Q Consensus 46 ~spLlQLPh~---------~~e~v~kl~~k----~L~~~~~~er~~lL~~~~gls~~q~~~v~~v~~~l 101 (336)
.+.|.++|.+ .++.++.+.+. .|++|++.+.+.+|.. .|-++.+...+.++++.+
T Consensus 77 ~~~l~~yP~l~~WLrvVgl~~esiq~i~~~~TLe~LLemsd~evr~~L~~-~ga~eEEcrRL~~Al~nL 144 (149)
T 2lpe_A 77 TAELNSYPRFSDWLYIFNVRPEVVQEIPQELTLDALLEMDEAKAKEMLRR-WGASTEECSRLQQALTCL 144 (149)
T ss_dssp CTTGGGCSCSTTTHHHHTCCHHHHTTSCTTCSHHHHTTSCHHHHHHHHHT-TTCCTHHHHHHHHHHTTG
T ss_pred chhhhcCchHHHHHHHhccCHHHHHHhhhhccHHHHHhcCHHHHHHHHHH-cCCCHHHHHHHHHHHHHH
Confidence 5678888865 46777777322 8899999999999976 456677888888877765
No 18
>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.81 E-value=94 Score=23.89 Aligned_cols=38 Identities=11% Similarity=0.214 Sum_probs=29.2
Q ss_pred EEEEEcCCCCceeEEEEEEcCCCcccceEEEEEEEeeccC
Q 019751 223 MGKIQAPAEGNYNLTCYCLCDSWLGCDKRTNLKVKILKRT 262 (336)
Q Consensus 223 ~l~F~aP~~G~~~l~l~viSDsYiG~D~~~~i~l~V~~~~ 262 (336)
.+.|..|.+|.|.|+|.|--+. |.-..-.+.+.|....
T Consensus 60 ~~~~t~~~~G~y~f~LTVtD~~--G~s~s~~v~VtV~~~~ 97 (102)
T 2yrl_A 60 VATVTGLQVGTYVFTLTVKDER--NLQSQSSVNVIVKEES 97 (102)
T ss_dssp EEEEESCCSSEEEEEEEEEBTT--CCEEEEEEEEEEECCS
T ss_pred cEEEECCCCeEEEEEEEEEeCC--CCEEEeEEEEEEcCCC
Confidence 3688899999999999975553 7666677888887654
No 19
>2wnv_B C1Q chain B, complement C1Q subcomponent subunit B; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_B 2wnu_B* 2jg9_B* 1pk6_B
Probab=34.71 E-value=48 Score=26.94 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=18.7
Q ss_pred EEEEcCCCCceeEEEEEEcCC
Q 019751 224 GKIQAPAEGNYNLTCYCLCDS 244 (336)
Q Consensus 224 l~F~aP~~G~~~l~l~viSDs 244 (336)
..|++|.||.|.|...+++..
T Consensus 41 G~Ftap~~G~Y~Fs~~~~~~~ 61 (136)
T 2wnv_B 41 GKFTCKVPGLYYFTYHASSRG 61 (136)
T ss_dssp TEEECSSCEEEEEEEEEEESS
T ss_pred CEEECCcCeEEEEEEEEEECC
Confidence 479999999999999999874
No 20
>2r5o_A Putative ATP binding component of ABC- transporter; immunoglobulin fold, carbohydrate binding, domain swapping, O antigen export; HET: PG4; 1.30A {Escherichia coli}
Probab=34.02 E-value=52 Score=28.02 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=29.0
Q ss_pred eEEEEEEcC-CCCceeEEEEEEcCC-Ccc---cceEEE-EEEEeecc
Q 019751 221 LVMGKIQAP-AEGNYNLTCYCLCDS-WLG---CDKRTN-LKVKILKR 261 (336)
Q Consensus 221 ~v~l~F~aP-~~G~~~l~l~viSDs-YiG---~D~~~~-i~l~V~~~ 261 (336)
.+.+.|++| .||.|.+.+.+.+.. +-+ .|+... +.|+|...
T Consensus 125 ~v~f~f~l~L~~G~Y~lsv~i~~~~~~~~~~~~d~~~da~~F~V~~~ 171 (188)
T 2r5o_A 125 VFKFSLPVDLNSGDYLLSFGISAGNPQTDMTPLDRRYDSIILHVTKS 171 (188)
T ss_dssp EEEEEEECCBCSEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEEECS
T ss_pred EEEEEEecccCCCeEEEEEEEecCCcCCCcEEEEEEccEEEEEEecC
Confidence 456777878 899999999998765 211 366655 67888544
No 21
>1mg7_A Early switch protein XOL-1 2.2K splice form; alpha-beta, gene regulation; 1.55A {Caenorhabditis elegans} SCOP: d.14.1.6 d.58.26.6
Probab=30.91 E-value=50 Score=31.91 Aligned_cols=93 Identities=14% Similarity=0.034 Sum_probs=48.8
Q ss_pred CcccEEEEEEECCCCeEEEEeeeeeccchhHHhhhhhhhhhhhcCCCCccchhhHHHHHHHhhhhcCceeEEEEEEcCCC
Q 019751 152 KEENFWFLLADSVSNNVWFSQKVSFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAE 231 (336)
Q Consensus 152 K~E~WwvvlgD~~~n~Ll~~krv~~~~~~~~~~~~~k~i~~~~~~~g~~~k~~~~~~~~~~~~~k~~~~~v~l~F~aP~~ 231 (336)
+-.||=| +..|-|+++|+=.|.+...-+-.+++-. ..-+ +....+.|.+-+|
T Consensus 292 ~i~GfEV----QQGGILvvLKKg~F~~nElL~~Ia~~i~----------------------e~s~--~svt~IsF~LLqp 343 (417)
T 1mg7_A 292 QVEGFEV----QQGGILVALKKDSFFDDELIEKIAIAIA----------------------TESR--QSVSSVSFDLLKL 343 (417)
T ss_dssp TEEEEEE----CSSCEEEEEETTGGGCHHHHHHHHHHHH----------------------HHCS--SCCCEEEEEEECB
T ss_pred cccceEE----ecccEEEEEecCccchhHHHHHHHHHHH----------------------Hhhh--cceeEEEeecccc
Confidence 4566743 6788889999988865221000010000 0011 1234578887766
Q ss_pred CceeEEEEEEcCCCcccceEEEEEEEeeccCccCccccccc
Q 019751 232 GNYNLTCYCLCDSWLGCDKRTNLKVKILKRTRAGTRGGIVS 272 (336)
Q Consensus 232 G~~~l~l~viSDsYiG~D~~~~i~l~V~~~~~~~~~~~~~~ 272 (336)
|+--|-+.+.+-.-+--...+-+.+.|.+.+...|....++
T Consensus 344 ~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (417)
T 1mg7_A 344 GPGASLVTLANSRRFEPECRVVLQIEVKPVSPGETSSEGIS 384 (417)
T ss_dssp CBCCEECCTTTGGGSCCEEEEEEEEEEEECC----------
T ss_pred CCCceEEEeccccccCccceEEEEEEEeecCCCcccccccc
Confidence 66666666666666666777778888877766444333333
No 22
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.11 E-value=74 Score=24.46 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHhhH-----HhhcCCHHHHHHHHhhccCCChHHHHHHHHHHhcC
Q 019751 53 PHFTEAVIKKIARK-----ELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMM 101 (336)
Q Consensus 53 Ph~~~e~v~kl~~k-----~L~~~~~~er~~lL~~~~gls~~q~~~v~~v~~~l 101 (336)
=++.+.++.++++. -|+.|+.+.+.+=| +++.-|.+.+.++++-|
T Consensus 30 igL~e~vv~~F~~e~IDG~lL~~L~ee~L~edf----~ls~Lq~kKi~~fI~GW 79 (84)
T 2dkz_A 30 IGLSEDVISFFVTEKIDGNLLVQLTEEILSEDF----KLSKLQVKKIMQFINGS 79 (84)
T ss_dssp TCCCHHHHHHHHTTTCCHHHHHHCCHHHHHHTS----CCCHHHHHHHHHHHHCC
T ss_pred cCCcHHHHHHHHHHccchHHHHhCCHHHHHhhc----CCCHHHHHHHHHHHhcC
Confidence 35556666666654 57788887765543 48999999999998754
No 23
>2wnv_A C1Q chain A, complement C1Q subcomponent subunit A; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_A 2wnu_A* 2jg9_A* 1pk6_A
Probab=30.03 E-value=41 Score=27.23 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=18.1
Q ss_pred EEEEcCCCCceeEEEEEEcC
Q 019751 224 GKIQAPAEGNYNLTCYCLCD 243 (336)
Q Consensus 224 l~F~aP~~G~~~l~l~viSD 243 (336)
..|++|.||.|.|...+++.
T Consensus 38 G~Ftap~~G~Y~Fs~~~~~~ 57 (134)
T 2wnv_A 38 GRFVCTVPGYYYFTFQVLSQ 57 (134)
T ss_dssp TEEECCSCEEEEEEEEEEES
T ss_pred CEEECeeCCEEEEEEEEEEC
Confidence 47999999999999999885
No 24
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=29.52 E-value=82 Score=29.46 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=35.7
Q ss_pred CCCcccCCCCCHHHHHHHhhH------HhhcCCHHHHHHHHhhccCCChHHHHHHHHHHhc
Q 019751 46 TAPFLQLPHFTEAVIKKIARK------ELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQM 100 (336)
Q Consensus 46 ~spLlQLPh~~~e~v~kl~~k------~L~~~~~~er~~lL~~~~gls~~q~~~v~~v~~~ 100 (336)
..+|..||++++..++++... ++...++.++..+. |++...+..+.+.+..
T Consensus 34 ~~~l~~l~Gi~~~~~~kL~~ag~~t~~~~~~~~~~~L~~~~----~~s~~~~~~~l~~~~~ 90 (349)
T 1pzn_A 34 IRSIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVA----GISEGTALKIIQAARK 90 (349)
T ss_dssp -CCSSCCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHH----CCCHHHHHHHHHHHHH
T ss_pred cccHHHcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhhc----CCCHHHHHHHHHHHhh
Confidence 357999999999999999875 56666766665553 4776666666555543
No 25
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=29.36 E-value=39 Score=24.58 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=33.6
Q ss_pred CCCcccCCCCCHHHHHHHhhH-----HhhcCCHHHHHHHHhhccCCChHHHHHHHHHHh
Q 019751 46 TAPFLQLPHFTEAVIKKIARK-----ELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQ 99 (336)
Q Consensus 46 ~spLlQLPh~~~e~v~kl~~k-----~L~~~~~~er~~lL~~~~gls~~q~~~v~~v~~ 99 (336)
.+.|..+|++.+...+++-.. .+...+.+++. .+.|+.+..+..+..+++
T Consensus 23 ~~~L~~I~gIG~~~A~~Ll~~fgsl~~l~~a~~eeL~----~i~GIG~~~a~~I~~~~~ 77 (78)
T 1kft_A 23 TSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA----KVPGISQGLAEKIFWSLK 77 (78)
T ss_dssp CCGGGGCTTCSSSHHHHHHHHHSCHHHHHHCCHHHHT----TSSSTTSHHHHHHHHHHT
T ss_pred HHHHhcCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHH----HCCCCCHHHHHHHHHHHh
Confidence 567889999988766666543 45555555543 235688888888877654
No 26
>2hr0_A Complement C3 beta chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2i07_A* 2wii_A* 2win_A* 2xwj_A* 3l3o_A* 3l5n_A* 3nms_A* 3nsa_A* 3ohx_A* 3t4a_A 2a74_A* 2a73_A* 2qki_A* 3g6j_A 2ice_A* 2icf_A* 2xwb_A*
Probab=29.00 E-value=4.4e+02 Score=26.37 Aligned_cols=43 Identities=12% Similarity=0.069 Sum_probs=26.4
Q ss_pred ccCCCeEEEEEeeeeeccCCCCCCCccCCCCCCCCcccEEEEEEECCCCeEEEEeeee
Q 019751 118 IQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVS 175 (336)
Q Consensus 118 It~g~~vtl~~~V~L~R~n~~~~~~v~aP~FP~~K~E~WwvvlgD~~~n~Ll~~krv~ 175 (336)
..||+.|++. +.+...+ +.| .. ..-.|.|.|++.++|.. +.+.
T Consensus 117 YrPGqtV~~r--~i~~d~~-------~~p---~~--~~v~v~l~dP~g~~i~~-~~~~ 159 (645)
T 2hr0_A 117 YTPGSTVLYR--IFTVNHK-------LLP---VG--RTVMVNIENPEGIPVKQ-DSLS 159 (645)
T ss_dssp CCTTSEEEEE--EEEECTT-------SCB---CC--CEEEEEEECTTSCEEEE-EEEE
T ss_pred CCCCCEEEEE--EEEECCC-------Ccc---cC--ceEEEEEECCCCCEEEE-EEee
Confidence 6889988888 6554221 112 11 23568888998888765 4554
No 27
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=27.36 E-value=93 Score=23.23 Aligned_cols=48 Identities=15% Similarity=0.136 Sum_probs=33.7
Q ss_pred CcccCCCCCHHHHHHHhhH-----HhhcCCHHHHHHHHhhccCCChHHHHHHHHHHh
Q 019751 48 PFLQLPHFTEAVIKKIARK-----ELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQ 99 (336)
Q Consensus 48 pLlQLPh~~~e~v~kl~~k-----~L~~~~~~er~~lL~~~~gls~~q~~~v~~v~~ 99 (336)
.|..+|++.+..++++-.. .++..+.+++.. +.|+.+..+..+..+++
T Consensus 33 ~L~~IpgIG~~~A~~Ll~~fgs~~~l~~as~~eL~~----i~GIG~~~a~~I~~~l~ 85 (91)
T 2a1j_B 33 CLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLAL----CPGLGPQKARRLFDVLH 85 (91)
T ss_dssp HHTTSTTCCHHHHHHHHHHHSSHHHHHSCCHHHHHT----SSSCCSHHHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHCCCHHHHHhCCHHHHHh----CCCCCHHHHHHHHHHHh
Confidence 4678999998877766553 566666665433 35688888888887774
No 28
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=27.10 E-value=90 Score=23.12 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=34.9
Q ss_pred CcccCCCCCHHHHHHHhhH-----HhhcCCHHHHHHHHhhccCCChHHHHHHHHHHhc
Q 019751 48 PFLQLPHFTEAVIKKIARK-----ELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQM 100 (336)
Q Consensus 48 pLlQLPh~~~e~v~kl~~k-----~L~~~~~~er~~lL~~~~gls~~q~~~v~~v~~~ 100 (336)
.|..+|++.+..++++-.. .++..+.+++.. +.|+.+..+..+..+++.
T Consensus 20 ~L~~IpgIG~~~A~~Ll~~fgsl~~l~~a~~~eL~~----i~GIG~~~a~~I~~~l~~ 73 (89)
T 1z00_A 20 CLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLAL----CPGLGPQKARRLFDVLHE 73 (89)
T ss_dssp HHTTSSSCCHHHHHHHHHHTCBHHHHHHCCHHHHHT----STTCCHHHHHHHHHHHHS
T ss_pred HHHcCCCCCHHHHHHHHHHCCCHHHHHhCCHHHHHh----CCCCCHHHHHHHHHHHHH
Confidence 4678999998877776654 566666655433 356888888888888764
No 29
>2wnv_C C1Q chain C, complement C1Q subcomponent subunit C; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_C 2wnu_C* 2jg9_C* 1pk6_C
Probab=26.71 E-value=56 Score=26.31 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=18.4
Q ss_pred EEEEcCCCCceeEEEEEEcCC
Q 019751 224 GKIQAPAEGNYNLTCYCLCDS 244 (336)
Q Consensus 224 l~F~aP~~G~~~l~l~viSDs 244 (336)
..|++|.||.|.|...+.+..
T Consensus 42 G~Ftap~~G~Y~Fs~~~~~~~ 62 (131)
T 2wnv_C 42 GKFTCKVPGLYYFVYHASHTA 62 (131)
T ss_dssp TEEECSSCEEEEEEEEEEESS
T ss_pred CEEEcccCCEEEEEEEEEECC
Confidence 479999999999999998764
No 30
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=25.34 E-value=17 Score=33.48 Aligned_cols=7 Identities=0% Similarity=-0.121 Sum_probs=4.4
Q ss_pred CCCCCCC
Q 019751 145 APYYPFH 151 (336)
Q Consensus 145 aP~FP~~ 151 (336)
.|||...
T Consensus 113 NpyF~N~ 119 (264)
T 2zd7_A 113 EGDFKEQ 119 (264)
T ss_dssp TTTBCCE
T ss_pred CCCccCC
Confidence 4677753
No 31
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=25.31 E-value=14 Score=36.42 Aligned_cols=8 Identities=25% Similarity=0.692 Sum_probs=4.5
Q ss_pred HHHHHHHh
Q 019751 74 QDRAELLS 81 (336)
Q Consensus 74 ~er~~lL~ 81 (336)
+.|.+++.
T Consensus 133 ~KR~eII~ 140 (417)
T 2ayu_A 133 EQRSRIIS 140 (417)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 45666653
No 32
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=23.95 E-value=88 Score=24.53 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=24.2
Q ss_pred eEEEEEEcCCCCceeEEEEEEcCCCcccceEEEEEE
Q 019751 221 LVMGKIQAPAEGNYNLTCYCLCDSWLGCDKRTNLKV 256 (336)
Q Consensus 221 ~v~l~F~aP~~G~~~l~l~viSDsYiG~D~~~~i~l 256 (336)
.+...+.+|+.|.|.+.++..+.. |.+....|.+
T Consensus 40 ~v~~~V~v~~aG~Y~l~~rya~~~--~~~~~~~l~V 73 (127)
T 2vzp_A 40 SVEWTVTVPSAGTYDVVVRYANGT--TTSRPLDFSV 73 (127)
T ss_dssp EEEEEEEESSSEEEEEEEEEECCS--SSCCCEEEEE
T ss_pred EEEEEEEcCCCCEEEEEEEEEcCC--CCCeEEEEEE
Confidence 466778889999999999999854 2344444443
No 33
>3jqw_A COLH protein, collagenase; beta-barrel, dual calcium site, cell adhesion; 2.00A {Clostridium histolyticum} SCOP: b.23.2.0 PDB: 3jqx_A
Probab=21.73 E-value=1.2e+02 Score=24.43 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=18.5
Q ss_pred eEEEEEEcCCCCceeEEEEEEcC
Q 019751 221 LVMGKIQAPAEGNYNLTCYCLCD 243 (336)
Q Consensus 221 ~v~l~F~aP~~G~~~l~l~viSD 243 (336)
.+..+|.+++||+|.+.|+=-++
T Consensus 84 ~~~~~~~~~~pGkYYl~Vy~y~~ 106 (121)
T 3jqw_A 84 NLSGKFKADKPGRYYIHLYMFNG 106 (121)
T ss_dssp EEEEEEEECSCEEEEEEEEEEEC
T ss_pred EEEEEEEeCCCeeEEEEEEEecC
Confidence 46678999999999999986443
No 34
>4fxk_A Complement C4 beta chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_A*
Probab=21.33 E-value=6e+02 Score=25.05 Aligned_cols=40 Identities=15% Similarity=0.053 Sum_probs=24.9
Q ss_pred cccCCCeEEEEEeeeeeccCCCCCCCccCCCCCCCCcccEEEEEEECCCCeEEE
Q 019751 117 GIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWF 170 (336)
Q Consensus 117 ~It~g~~vtl~~~V~L~R~n~~~~~~v~aP~FP~~K~E~WwvvlgD~~~n~Ll~ 170 (336)
-.+||+.|++. +.+...+. .| . .+..-+.|.|++.++|..
T Consensus 130 iYrPGqtV~~r--~i~~d~~~-------~p---~--~~~~~v~i~dp~g~~v~~ 169 (656)
T 4fxk_A 130 IYNPGQRVRYR--VFALDQKM-------RP---S--TDTITVMVENSHGLRVRK 169 (656)
T ss_dssp EECTTCEEEEE--EEEECSSS-------SB---C--CCCEEEEEECTTCCEEEE
T ss_pred CcCCCCEEEEE--EEEECCcc-------Cc---C--cccceEEEECCCCcEEee
Confidence 36999999988 65532211 11 1 223457889998887754
No 35
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=20.78 E-value=1.1e+02 Score=21.34 Aligned_cols=49 Identities=14% Similarity=0.328 Sum_probs=33.0
Q ss_pred CcccCCCCCHHHHHHHhhH-----HhhcCCHHHHHHHHhhccCCChHHHHHHHHHHhc
Q 019751 48 PFLQLPHFTEAVIKKIARK-----ELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQM 100 (336)
Q Consensus 48 pLlQLPh~~~e~v~kl~~k-----~L~~~~~~er~~lL~~~~gls~~q~~~v~~v~~~ 100 (336)
.|..+|++.....+++-.. .+...+.+++. .+.|+.+..+..+..++..
T Consensus 15 ~L~~i~giG~~~a~~Ll~~fgs~~~l~~a~~~~L~----~i~Gig~~~a~~i~~~~~~ 68 (75)
T 1x2i_A 15 IVEGLPHVSATLARRLLKHFGSVERVFTASVAELM----KVEGIGEKIAKEIRRVITA 68 (75)
T ss_dssp HHTTSTTCCHHHHHHHHHHHCSHHHHHHCCHHHHT----TSTTCCHHHHHHHHHHHHS
T ss_pred HHcCCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHh----cCCCCCHHHHHHHHHHHhC
Confidence 5788999998777766553 45555554432 2357888888888877654
No 36
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=20.71 E-value=1.2e+02 Score=26.32 Aligned_cols=49 Identities=10% Similarity=0.264 Sum_probs=36.2
Q ss_pred CcccCCCCCHHHHHHHhhH-----HhhcCCHHHHHHHHhhccCCChHHHHHHHHHHhc
Q 019751 48 PFLQLPHFTEAVIKKIARK-----ELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQM 100 (336)
Q Consensus 48 pLlQLPh~~~e~v~kl~~k-----~L~~~~~~er~~lL~~~~gls~~q~~~v~~v~~~ 100 (336)
.|.++|++.+..++.+..+ .++..+.+++..+ .|+.++.++.+..+++.
T Consensus 163 ~L~~i~gVg~~~a~~Ll~~fgs~~~l~~a~~e~L~~v----~GiG~~~a~~i~~~~~~ 216 (219)
T 2bgw_A 163 ILQSFPGIGRRTAERILERFGSLERFFTASKAEISKV----EGIGEKRAEEIKKILMT 216 (219)
T ss_dssp HHHTSTTCCHHHHHHHHHHHSSHHHHTTCCHHHHHHS----TTCCHHHHHHHHHHHHS
T ss_pred HHhcCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhhC----CCCCHHHHHHHHHHHhc
Confidence 3668999999888777665 6777777765433 56888888888887753
No 37
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=20.44 E-value=21 Score=32.93 Aligned_cols=52 Identities=21% Similarity=0.227 Sum_probs=0.0
Q ss_pred CCCCcccCCCCCHHHHHHHhhH------HhhcCCHHHHHHHHhhccCCChHHHHHHHHHHhc
Q 019751 45 GTAPFLQLPHFTEAVIKKIARK------ELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQM 100 (336)
Q Consensus 45 ~~spLlQLPh~~~e~v~kl~~k------~L~~~~~~er~~lL~~~~gls~~q~~~v~~v~~~ 100 (336)
...+|.+||++++..+++++.. ++...++.++... .|++...+..+.+.+..
T Consensus 10 ~~~~~~~l~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~----~g~s~~~~~~~~~~~~~ 67 (324)
T 2z43_A 10 NIKTINDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVA----AGIPLSTAQKIIKEARD 67 (324)
T ss_dssp --------------------------------------------------------------
T ss_pred CCccHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHh----hCCCHHHHHHHHHHHHh
Confidence 3458999999999999998775 3433344443322 45666666666555543
Done!