BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019753
(336 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XMB|A Chain A, X-ray Structure Of Iaa-aminoacid Hydrolase From
Arabidopsis Thaliana Gene At5g56660
pdb|2Q43|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Iaa-Aminoacid Hydrolase From Arabidopsis Thaliana Gene
At5g56660
Length = 418
Score = 305 bits (782), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 142/231 (61%), Positives = 181/231 (78%)
Query: 86 EVMELARRPETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIR 145
+++E A+ PE DW+ +RR IH+NPEL ++E ETS+L+R+EL+ + I Y+YP+A TG+
Sbjct: 16 KLLEFAKSPEVFDWMVKIRRKIHENPELGYEELETSKLIRSELELIGIKYRYPVAITGVI 75
Query: 146 AWVGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSR 205
++GTG PPFVALRADMDALPIQE VEWE+KSK+AGKMHACGHD HV ML+GAAKIL
Sbjct: 76 GYIGTGEPPFVALRADMDALPIQEGVEWEHKSKIAGKMHACGHDGHVTMLLGAAKILHEH 135
Query: 206 EHLLKGTVILIFQPAEEAGNGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLA 265
H L+GTV+LIFQPAEE +GAK+M +GAL++VEAIF +H+S P G SR G LA
Sbjct: 136 RHHLQGTVVLIFQPAEEGLSGAKKMREEGALKNVEAIFGIHLSARIPFGKAASRAGSFLA 195
Query: 266 GCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREANPLDSQV 316
G G F AVI+GK G AA P ++DPV+AAS+ V+SLQ LVSRE +PLDS+V
Sbjct: 196 GAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDPLDSKV 246
>pdb|1YSJ|A Chain A, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
pdb|1YSJ|B Chain B, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
Length = 404
Score = 181 bits (458), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 131/219 (59%), Gaps = 2/219 (0%)
Query: 100 LKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIG-YKYPLAKTGIRAWV-GTGGPPFVA 157
L + RR +H++PEL+FQE ET++ +R L+ +I P KTG+ A + G P +A
Sbjct: 34 LINXRRDLHEHPELSFQEVETTKKIRRWLEEEQIEILDVPQLKTGVIAEIKGREDGPVIA 93
Query: 158 LRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIF 217
+RAD+DALPIQE + SKV G HACGHD H A +IG A +L R LKGTV IF
Sbjct: 94 IRADIDALPIQEQTNLPFASKVDGTXHACGHDFHTASIIGTAXLLNQRRAELKGTVRFIF 153
Query: 218 QPAEEAGNGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGK 277
QPAEE GA++++ G L V AIF H + P G IG + GPL A F VI GK
Sbjct: 154 QPAEEIAAGARKVLEAGVLNGVSAIFGXHNKPDLPVGTIGVKEGPLXASVDRFEIVIKGK 213
Query: 278 KGGAANPHRSVDPVLAASAAVISLQGLVSREANPLDSQV 316
G A+ P+ S+DP+ AA + LQ +VSR + L + V
Sbjct: 214 GGHASIPNNSIDPIAAAGQIISGLQSVVSRNISSLQNAV 252
>pdb|4EWT|A Chain A, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|C Chain C, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|D Chain D, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|B Chain B, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
Length = 392
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 123/216 (56%), Gaps = 2/216 (0%)
Query: 103 VRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGP-PFVALRAD 161
+RR +HQ+PEL+F E ET++ + ++ + + GI+ + +G P +A+RAD
Sbjct: 19 IRRYLHQHPELSFHEDETAKYIAEFYKGKDVEVETNVGPRGIKVTIDSGKPGKTLAIRAD 78
Query: 162 MDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAE 221
DALPI E + S+ G MHACGHDAH A ++ A+ L + G V++I QPAE
Sbjct: 79 FDALPITEDTGLSFASQNKGVMHACGHDAHTAYMLVLAETLAEMKDSFTGKVVVIHQPAE 138
Query: 222 EA-GNGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGG 280
E GAK M+ +G L+ V+ + VHV TG + RPG + G FF + GK G
Sbjct: 139 EVPPGGAKTMIENGVLDGVDHVLGVHVMSTMKTGKVYYRPGYVQTGRAFFKLKVQGKGGH 198
Query: 281 AANPHRSVDPVLAASAAVISLQGLVSREANPLDSQV 316
++PH + D ++A S V +LQ +VSR +P ++ V
Sbjct: 199 GSSPHMANDAIVAGSYFVTALQTVVSRRLSPFETGV 234
>pdb|3IO1|A Chain A, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
pdb|3IO1|B Chain B, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
Length = 445
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 67/122 (54%), Gaps = 8/122 (6%)
Query: 143 GIRAWVGTGGP-PFVALRADMDALPIQEAVEWEYK-------SKVAGKMHACGHDAHVAM 194
G+ A + TG P P +A R D DAL + E + ++ S AG HACGHD H A+
Sbjct: 98 GVVATLDTGRPGPTLAFRVDXDALDLNEQHDDSHRPHRDHFASCNAGXXHACGHDGHTAI 157
Query: 195 LIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALEDVEAIFAVHVSHEHPTG 254
+G A +LK L G + LIFQPAEE GA+ +A G ++DV+ A+H+ P G
Sbjct: 158 GLGLAHVLKQYAAQLNGVIKLIFQPAEEGTRGARAXVAAGVVDDVDYFTAIHIGTGVPAG 217
Query: 255 VI 256
+
Sbjct: 218 TV 219
>pdb|3RAM|A Chain A, Crystal Structure Of Hmra
pdb|3RAM|B Chain B, Crystal Structure Of Hmra
pdb|3RAM|C Chain C, Crystal Structure Of Hmra
pdb|3RAM|D Chain D, Crystal Structure Of Hmra
Length = 394
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 37/178 (20%)
Query: 91 ARRPETVDWLKS-------VRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLA--K 141
+ + +D++++ + IH+ PEL +E SR L L + + +A
Sbjct: 2 GEKQQILDYIETNKYSYIEISHRIHERPELGNEEIFASRTLIDRLKEHDFEIETEIAGHA 61
Query: 142 TGIRAWVGTG-GPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAK 200
TG A +G P + A+ DALP G HACGH+ +IG A
Sbjct: 62 TGFIATYDSGLDGPAIGFLAEYDALP--------------GLGHACGHN-----IIGTAS 102
Query: 201 I-----LKSREHLLKGTVILIFQPAEEAG-NGAKR--MMADGALEDVEAIFAVHVSHE 250
+ LK + G V+++ PAEE G NG+ + + G ++ ++ +H +E
Sbjct: 103 VLGAIGLKQVIDQIGGKVVVLGCPAEEGGENGSAKASYVKAGVIDQIDIALXIHPGNE 160
>pdb|2PCS|A Chain A, Crystal Structure Of Conserved Protein From Geobacillus
Kaustophilus
Length = 162
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 149 GTGGPPFVALRADMDALPIQE---AVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKS 204
G GGP FV +D PI + + + Y ++V GK+ A G ML G AK+L S
Sbjct: 82 GEGGPGFVNAEGVIDLTPINDECTQLTYTYSAEVGGKVAAIGQ----RMLGGVAKLLIS 136
>pdb|3LKZ|A Chain A, Structural And Functional Analyses Of A Conserved
Hydrophobic Pocket Of Flavivirus Methyltransferase
pdb|3LKZ|B Chain B, Structural And Functional Analyses Of A Conserved
Hydrophobic Pocket Of Flavivirus Methyltransferase
Length = 321
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 39 DINSLGSSTTAATTPALKPDGGSVKNRSSTSRKPYSS 75
D+N LGS T A P L D +KNR R+ YSS
Sbjct: 278 DVN-LGSGTRAVGKPLLNSDTSKIKNRIERLRREYSS 313
>pdb|2Q2E|A Chain A, Crystal Structure Of The Topoisomerase Vi Holoenzyme From
Methanosarcina Mazei
Length = 369
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 63 KNRSSTSRKPYSSCEVWSRACSKEVMELARRPETVDWLKSVRRT-IHQNPE 112
+NR ST R+ Y E W A KE E R E ++ L S++R H PE
Sbjct: 95 RNRGSTLRELYYISEGWDYAKFKEQGESDRLIEDLEILTSLQREYFHMRPE 145
>pdb|4D94|A Chain A, Crystal Structure Of Tep1r
Length = 1325
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 144 IRAWVGTGGPPFVALRADMDALPIQEAVEW-EYKSKVAGKMHACGHDAHVAM 194
+ A+VGT V +D+DA +++A++W K +G+ G + H M
Sbjct: 903 LTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEM 954
>pdb|2PN5|A Chain A, Crystal Structure Of Tep1r
Length = 1325
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 144 IRAWVGTGGPPFVALRADMDALPIQEAVEW-EYKSKVAGKMHACGHDAHVAM 194
+ A+VGT V +D+DA +++A++W K +G+ G + H M
Sbjct: 903 LTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEM 954
>pdb|3CHV|A Chain A, Crystal Structure Of A Prokaryotic Domain Of Unknown
Function (Duf849) Member (Spoa0042) From Silicibacter
Pomeroyi Dss-3 At 1.45 A Resolution
Length = 284
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 94 PETVDWLKSVRRTIHQNPELAFQEFETSRLLRA 126
P+ VDWL + R+ PE+ + F+ S +LRA
Sbjct: 128 PDLVDWLAAQXRSYRVTPEI--EAFDLSHILRA 158
>pdb|3NF2|A Chain A, Crystal Structure Of Polyprenyl Synthetase From
Streptomyces Coelicolor A3(2)
Length = 352
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 15/91 (16%)
Query: 193 AMLIGAAKILKSREHLLK-GTVILIFQPAEEAGNGAKRM------MADGALEDVEAIFAV 245
A+L+G A + E LL+ GTV EAG +R+ + DG +D+
Sbjct: 118 AILVGDALFALANEVLLELGTV--------EAGRATRRLTKASRSLIDGQAQDISYEHRD 169
Query: 246 HVSHEHPTGVIGSRPGPLLAGCGFFHAVISG 276
VS E + G++ G LLA AV+ G
Sbjct: 170 RVSVEECLEMEGNKTGALLACASSIGAVLGG 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,860,602
Number of Sequences: 62578
Number of extensions: 389126
Number of successful extensions: 777
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 766
Number of HSP's gapped (non-prelim): 17
length of query: 336
length of database: 14,973,337
effective HSP length: 99
effective length of query: 237
effective length of database: 8,778,115
effective search space: 2080413255
effective search space used: 2080413255
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)