Query 019753
Match_columns 336
No_of_seqs 186 out of 1353
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 04:16:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019753.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019753hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02280 IAA-amino acid hydrol 100.0 1.1E-48 2.5E-53 394.1 33.6 275 60-334 56-334 (478)
2 PLN02693 IAA-amino acid hydrol 100.0 5.3E-45 1.2E-49 364.2 30.1 252 83-334 32-284 (437)
3 COG1473 AbgB Metal-dependent a 100.0 1.7E-44 3.8E-49 353.7 27.0 240 95-334 9-252 (392)
4 TIGR01891 amidohydrolases amid 100.0 2.5E-40 5.5E-45 322.3 26.7 234 101-334 2-238 (363)
5 PRK06915 acetylornithine deace 100.0 7.6E-38 1.7E-42 310.4 28.4 240 83-334 4-282 (422)
6 PRK08588 succinyl-diaminopimel 100.0 1.3E-36 2.7E-41 297.1 27.1 228 98-334 2-244 (377)
7 PRK13013 succinyl-diaminopimel 100.0 2.6E-36 5.7E-41 299.5 28.5 234 86-328 4-272 (427)
8 PRK06837 acetylornithine deace 100.0 2E-35 4.3E-40 294.1 28.7 244 78-333 2-286 (427)
9 PRK13004 peptidase; Reviewed 100.0 1.3E-34 2.9E-39 285.5 28.7 239 84-334 3-254 (399)
10 PRK06133 glutamate carboxypept 100.0 2.7E-34 5.9E-39 284.6 29.0 237 84-334 25-275 (410)
11 TIGR03526 selenium_YgeY putati 100.0 4.6E-34 1E-38 281.4 28.1 237 86-334 3-252 (395)
12 TIGR03320 ygeY M20/DapE family 100.0 3.9E-34 8.4E-39 281.7 27.5 236 86-333 3-251 (395)
13 PRK07522 acetylornithine deace 100.0 2.5E-34 5.5E-39 281.3 25.8 227 98-334 4-253 (385)
14 PRK07473 carboxypeptidase; Pro 100.0 1.6E-33 3.5E-38 276.3 28.6 225 96-334 9-249 (376)
15 PRK07338 hypothetical protein; 100.0 1.7E-33 3.8E-38 277.4 28.5 235 84-334 5-268 (402)
16 TIGR01246 dapE_proteo succinyl 100.0 8.5E-34 1.8E-38 276.5 25.8 229 101-334 2-247 (370)
17 PRK13009 succinyl-diaminopimel 100.0 1.5E-33 3.3E-38 274.9 26.8 231 99-334 3-250 (375)
18 PRK05111 acetylornithine deace 100.0 1.4E-33 3.1E-38 276.0 26.6 226 97-334 4-256 (383)
19 TIGR01892 AcOrn-deacetyl acety 100.0 1.1E-33 2.3E-38 274.4 25.3 222 102-334 1-243 (364)
20 TIGR01910 DapE-ArgE acetylorni 100.0 9.9E-34 2.1E-38 276.7 24.0 226 102-334 2-253 (375)
21 TIGR01900 dapE-gram_pos succin 100.0 1.1E-33 2.5E-38 277.1 24.2 222 103-334 1-252 (373)
22 PRK08596 acetylornithine deace 100.0 9.6E-33 2.1E-37 274.3 27.7 235 86-333 3-272 (421)
23 PRK13007 succinyl-diaminopimel 100.0 8.3E-33 1.8E-37 267.5 26.2 222 96-334 5-238 (352)
24 PRK13983 diaminopimelate amino 100.0 7.5E-33 1.6E-37 271.7 26.2 234 95-334 2-271 (400)
25 TIGR01880 Ac-peptdase-euk N-ac 100.0 1E-32 2.2E-37 272.0 26.6 233 97-334 8-268 (400)
26 PRK08651 succinyl-diaminopimel 100.0 5.1E-32 1.1E-36 266.0 26.6 228 95-334 3-261 (394)
27 PRK09133 hypothetical protein; 100.0 7.6E-32 1.7E-36 271.6 26.3 205 95-304 34-262 (472)
28 PRK08737 acetylornithine deace 100.0 2.5E-31 5.4E-36 259.9 26.0 218 95-334 3-240 (364)
29 PRK08201 hypothetical protein; 100.0 3.3E-31 7.1E-36 265.8 26.3 213 85-304 3-239 (456)
30 PRK06446 hypothetical protein; 100.0 1.9E-31 4.2E-36 266.2 24.4 200 98-304 2-220 (436)
31 PRK08652 acetylornithine deace 100.0 5.7E-31 1.2E-35 253.7 24.4 214 98-334 2-222 (347)
32 TIGR01883 PepT-like peptidase 100.0 5.5E-31 1.2E-35 255.8 23.7 217 100-334 2-236 (361)
33 PRK07907 hypothetical protein; 100.0 1.3E-30 2.9E-35 261.0 27.1 211 84-304 6-240 (449)
34 PRK07318 dipeptidase PepV; Rev 100.0 1.3E-30 2.8E-35 262.4 25.1 236 87-327 5-339 (466)
35 PRK09104 hypothetical protein; 100.0 2.9E-30 6.2E-35 259.6 26.6 214 84-303 5-246 (464)
36 PRK04443 acetyl-lysine deacety 100.0 3.5E-30 7.6E-35 249.8 25.7 215 97-333 5-226 (348)
37 PRK07906 hypothetical protein; 100.0 3.4E-30 7.3E-35 256.1 25.0 230 101-334 2-297 (426)
38 PRK00466 acetyl-lysine deacety 100.0 5.5E-30 1.2E-34 248.0 25.1 210 95-334 7-222 (346)
39 TIGR01886 dipeptidase dipeptid 100.0 6.6E-30 1.4E-34 257.4 26.1 232 87-327 4-338 (466)
40 PRK08262 hypothetical protein; 100.0 5.1E-30 1.1E-34 259.2 22.5 203 95-304 41-277 (486)
41 PRK07079 hypothetical protein; 100.0 8.5E-29 1.8E-33 249.4 27.3 216 79-303 2-246 (469)
42 PRK13381 peptidase T; Provisio 100.0 6.1E-29 1.3E-33 245.6 24.5 216 100-325 3-268 (404)
43 PRK05469 peptidase T; Provisio 100.0 5.4E-29 1.2E-33 246.3 22.7 219 98-326 2-271 (408)
44 PRK15026 aminoacyl-histidine d 100.0 2.4E-28 5.2E-33 247.1 25.5 218 97-334 9-262 (485)
45 COG0624 ArgE Acetylornithine d 100.0 3.9E-28 8.6E-33 240.0 24.3 226 95-327 10-261 (409)
46 TIGR01882 peptidase-T peptidas 100.0 3.4E-28 7.5E-33 241.1 20.7 198 98-304 3-251 (410)
47 TIGR01887 dipeptidaselike dipe 100.0 1.4E-27 3.1E-32 239.4 25.1 225 98-326 2-325 (447)
48 PRK07205 hypothetical protein; 100.0 2.1E-27 4.5E-32 237.7 25.2 208 95-303 8-273 (444)
49 PRK12892 allantoate amidohydro 100.0 1.9E-27 4.1E-32 235.2 24.4 212 97-334 9-283 (412)
50 TIGR01902 dapE-lys-deAc N-acet 100.0 4.1E-27 8.8E-32 227.0 23.7 206 102-334 1-213 (336)
51 PRK06156 hypothetical protein; 100.0 9.9E-27 2.2E-31 237.4 25.9 205 95-303 43-334 (520)
52 TIGR01893 aa-his-dipept aminoa 100.0 8.3E-27 1.8E-31 235.5 24.8 217 98-334 4-256 (477)
53 PRK12893 allantoate amidohydro 100.0 1.9E-26 4.1E-31 228.2 25.8 215 97-334 9-282 (412)
54 PRK09290 allantoate amidohydro 100.0 2.2E-26 4.8E-31 228.2 24.5 212 98-334 7-283 (413)
55 PRK12891 allantoate amidohydro 99.9 2.7E-25 5.9E-30 220.6 24.9 200 111-334 33-282 (414)
56 PRK12890 allantoate amidohydro 99.9 1.6E-24 3.4E-29 214.9 26.2 203 107-334 27-284 (414)
57 KOG2275 Aminoacylase ACY1 and 99.9 1.6E-23 3.5E-28 202.2 23.1 231 98-333 25-284 (420)
58 TIGR01879 hydantase amidase, h 99.9 1.1E-23 2.4E-28 208.2 21.9 200 111-334 24-275 (401)
59 PRK08554 peptidase; Reviewed 99.9 2.5E-23 5.3E-28 208.3 20.6 200 99-303 2-235 (438)
60 PRK13799 unknown domain/N-carb 99.9 6.3E-22 1.4E-26 204.8 24.8 216 96-334 179-461 (591)
61 TIGR03176 AllC allantoate amid 99.9 6.6E-22 1.4E-26 196.2 23.3 199 112-334 27-276 (406)
62 PRK13590 putative bifunctional 99.9 2.5E-21 5.4E-26 200.4 24.6 214 96-334 179-459 (591)
63 KOG2276 Metalloexopeptidases [ 99.7 4.8E-16 1E-20 149.7 18.7 212 84-303 4-252 (473)
64 PRK10199 alkaline phosphatase 99.5 2E-13 4.4E-18 132.0 15.7 131 98-233 35-188 (346)
65 PF01546 Peptidase_M20: Peptid 99.5 5.8E-14 1.3E-18 123.3 8.2 92 157-248 1-101 (189)
66 COG4187 RocB Arginine degradat 99.5 3.5E-13 7.7E-18 131.2 14.1 203 97-303 7-262 (553)
67 TIGR03106 trio_M42_hydro hydro 99.5 1.5E-12 3.3E-17 126.6 16.5 129 98-227 3-223 (343)
68 PRK09961 exoaminopeptidase; Pr 99.2 3.5E-10 7.6E-15 110.2 17.0 143 101-249 3-224 (344)
69 COG1363 FrvX Cellulase M and r 99.2 3E-10 6.6E-15 110.3 15.7 146 98-249 2-238 (355)
70 TIGR03107 glu_aminopep glutamy 99.2 9E-10 2E-14 107.5 16.3 142 102-249 2-236 (350)
71 COG2195 PepD Di- and tripeptid 99.2 1.5E-10 3.3E-15 114.7 10.6 218 97-328 4-274 (414)
72 PRK09864 putative peptidase; P 99.1 1.4E-09 2.9E-14 106.3 16.5 140 101-249 3-231 (356)
73 PF07687 M20_dimer: Peptidase 98.9 1.7E-09 3.6E-14 87.3 6.4 68 266-333 5-78 (111)
74 KOG2194 Aminopeptidases of the 98.3 4.5E-06 9.7E-11 88.3 10.1 92 142-248 129-226 (834)
75 PF04389 Peptidase_M28: Peptid 98.0 1.7E-05 3.7E-10 69.4 6.4 83 155-246 2-88 (179)
76 PF05343 Peptidase_M42: M42 gl 97.7 0.00024 5.1E-09 68.0 10.2 61 183-248 128-191 (292)
77 KOG3946 Glutaminyl cyclase [Po 96.4 0.071 1.5E-06 50.4 12.5 113 109-233 64-200 (338)
78 COG2234 Iap Predicted aminopep 96.2 0.016 3.5E-07 57.9 8.1 66 152-234 207-274 (435)
79 KOG2195 Transferrin receptor a 95.4 0.048 1E-06 58.0 7.9 76 142-233 339-420 (702)
80 PF05450 Nicastrin: Nicastrin; 94.8 0.16 3.5E-06 47.1 8.8 66 154-232 1-73 (234)
81 KOG2526 Predicted aminopeptida 92.7 1.8 3.8E-05 43.5 11.9 93 142-247 194-305 (555)
82 cd00433 Peptidase_M17 Cytosol 90.3 11 0.00023 38.6 15.2 126 95-223 151-296 (468)
83 PTZ00412 leucyl aminopeptidase 85.1 37 0.0008 35.5 15.3 126 95-223 209-355 (569)
84 KOG2597 Predicted aminopeptida 84.2 14 0.00031 38.0 11.7 130 95-226 186-334 (513)
85 PRK00913 multifunctional amino 83.8 37 0.0008 35.0 14.6 126 95-223 168-310 (483)
86 PF00883 Peptidase_M17: Cytoso 77.6 27 0.00058 33.9 10.6 110 101-222 1-140 (311)
87 PRK05015 aminopeptidase B; Pro 77.1 79 0.0017 32.0 14.1 122 97-224 99-248 (424)
88 COG4882 Predicted aminopeptida 63.8 24 0.00053 35.0 6.9 71 142-233 179-259 (486)
89 COG0260 PepB Leucyl aminopepti 61.7 2E+02 0.0044 29.7 13.5 124 96-223 165-309 (485)
90 KOG3566 Glycosylphosphatidylin 35.0 2.9E+02 0.0062 29.3 9.6 88 123-232 93-192 (617)
91 PRK02256 putative aminopeptida 33.5 1.6E+02 0.0035 30.2 7.6 58 104-165 32-105 (462)
92 PF06675 DUF1177: Protein of u 31.2 4.6E+02 0.01 24.8 12.2 89 152-250 30-133 (276)
93 PF04114 Gaa1: Gaa1-like, GPI 31.2 1.1E+02 0.0025 31.5 6.2 72 141-233 3-77 (504)
94 COG5095 TAF6 Transcription ini 30.6 32 0.0007 33.4 1.9 70 21-92 127-211 (450)
95 COG5230 Uncharacterized conser 27.9 1.7E+02 0.0037 25.7 5.7 58 74-133 20-77 (194)
96 COG2195 PepD Di- and tripeptid 27.4 75 0.0016 32.1 4.0 64 154-224 62-134 (414)
97 PRK02256 putative aminopeptida 25.6 1.1E+02 0.0024 31.4 4.8 39 182-224 253-293 (462)
98 PF13153 DUF3985: Protein of u 25.5 57 0.0012 21.7 1.8 21 7-27 21-41 (44)
No 1
>PLN02280 IAA-amino acid hydrolase
Probab=100.00 E-value=1.1e-48 Score=394.09 Aligned_cols=275 Identities=75% Similarity=1.157 Sum_probs=240.2
Q ss_pred CcccccCcCCCC--CC-CccccchHHhHHHHHHHhcCcchHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHhCCCeEE
Q 019753 60 GSVKNRSSTSRK--PY-SSCEVWSRACSKEVMELARRPETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYK 136 (336)
Q Consensus 60 ~~~~~~~~~~~~--~~-~~~~~~~~~~~~~i~~~~~~~~~~~~li~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v~ 136 (336)
-|.+||...++. ++ ..|.+|++.|++.|+-...+++..+.+.+++|.++++||++++|.++++||.++|+++|++++
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~r~lh~~PEls~~E~~t~~~i~~~L~~~G~~~~ 135 (478)
T PLN02280 56 NSPKKNQSSGLPAKPSSDECEVWTKACSEAVLRLAYQPDTVAWLKSVRRKIHENPELAFEEYKTSELVRSELDRMGIMYR 135 (478)
T ss_pred CCCcccccCCCCCCCCCchhhHhhhhhhHHHHHhhhhHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCCCeEE
Confidence 344555443333 44 899999999999999888777889999999999999999999999999999999999999988
Q ss_pred EecCCceEEEEecCCCCCeEEEEeccCcccCCCccCCccccccCCeeeecCCcHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 019753 137 YPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILI 216 (336)
Q Consensus 137 ~~~~~~nvia~i~g~~~p~I~l~~H~DtVP~~~~~~~pf~~~~~G~~~g~G~dg~~A~~L~Aa~~L~~~~~~l~g~I~~i 216 (336)
+...++|++++++++++|+|+|+|||||||+++...|+|.+..+|++||||||+++|++++++++|++.+.+++|+|.|+
T Consensus 136 ~~~~~~~vva~~g~~~~~~I~l~gh~DaVP~~e~~~w~~~p~~~G~~h~cGhd~~~A~~l~a~~~L~~~~~~~~g~V~~i 215 (478)
T PLN02280 136 YPLAKTGIRAWIGTGGPPFVAVRADMDALPIQEAVEWEHKSKVAGKMHACGHDAHVAMLLGAAKILKSREHLLKGTVVLL 215 (478)
T ss_pred ecCCCCEEEEEECCCCCCEEEEEEecCCCcccCCCCCCCCCCCCCeEEeCCCcHHHHHHHHHHHHHHhccccCCceEEEE
Confidence 76667899999954445899999999999998877899999889999999999999999999999988777789999999
Q ss_pred EecCCCCcchHHHHHHcCCCCCCcEEEEEEeCCCCCceeEEeccCCccceeEEEEEEEEeecCCCCCCCCCCCHHHHHHH
Q 019753 217 FQPAEEAGNGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASA 296 (336)
Q Consensus 217 ft~dEE~g~Ga~~li~~g~~~~~d~~i~~ept~~~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~P~~G~NAI~~a~~ 296 (336)
|++|||.+.|+++|+++|.++++|++++.|+++..+.+.+..+.+..++|..|++|+++|+++|++.|+.|+|||..+++
T Consensus 216 f~pdEE~g~Ga~~li~~g~~~~~d~~~~~h~~~~~p~g~ig~~~~~~~~G~~~~~I~v~Gk~aHas~P~~G~NAI~~aa~ 295 (478)
T PLN02280 216 FQPAEEAGNGAKRMIGDGALDDVEAIFAVHVSHEHPTAVIGSRPGPLLAGCGFFRAVISGKKGRAGSPHHSVDLILAASA 295 (478)
T ss_pred ecccccccchHHHHHHCCCCcCCCEEEEEecCCCCCCceeEecccccccceeEEEEEEECcchhcCCcccCcCHHHHHHH
Confidence 99999998899999999999889999999987655666666565666779999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCCCCCceEEEEEEEecCCCc-CCCCC
Q 019753 297 AVISLQGLVSREANPLDSQVSLSLWIITTHFAL-NPSFG 334 (336)
Q Consensus 297 ~i~~L~~l~~~~~~~~~~~tl~vg~I~gG~~~~-~p~~~ 334 (336)
++.+|+++..+..++....++|+|.|+||+..+ +|+.+
T Consensus 296 li~~l~~l~~r~~~~~~~~tvnvg~I~GG~~~NvIPd~~ 334 (478)
T PLN02280 296 AVISLQGIVSREANPLDSQVVSVTTMDGGNNLDMIPDTV 334 (478)
T ss_pred HHHHHHHHHhcccCCCCCcEEEEEEEEccCCCCEeCCEE
Confidence 999999886555556667899999999998765 88754
No 2
>PLN02693 IAA-amino acid hydrolase
Probab=100.00 E-value=5.3e-45 Score=364.19 Aligned_cols=252 Identities=58% Similarity=0.932 Sum_probs=218.7
Q ss_pred hHHHHHHHhcCcchHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHhCCCeEEEecCCceEEEEecCCCCCeEEEEecc
Q 019753 83 CSKEVMELARRPETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADM 162 (336)
Q Consensus 83 ~~~~i~~~~~~~~~~~~li~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v~~~~~~~nvia~i~g~~~p~I~l~~H~ 162 (336)
++.++...++..+..+++++++++||++||+|++|.+++++|.++|+++|+++++..+++||+|+++++++|+|+|+|||
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~r~~lh~~PE~s~~E~~ta~~i~~~L~~~G~~~~~~~~~~~via~~g~~~g~~i~l~~h~ 111 (437)
T PLN02693 32 IQINLLELAKSPEVFDWMVRIRRKIHENPELGYEEFETSKLIRSELDLIGIKYRYPVAITGIIGYIGTGEPPFVALRADM 111 (437)
T ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHCCCeeEecCCCcEEEEEECCCCCCEEEEEeec
Confidence 34445555552246688999999999999999999999999999999999998764457899999964557999999999
Q ss_pred CcccCCCccCCccccccCCeeeecCCcHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCcchHHHHHHcCCCCCCcEE
Q 019753 163 DALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALEDVEAI 242 (336)
Q Consensus 163 DtVP~~~~~~~pf~~~~~G~~~g~G~dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g~Ga~~li~~g~~~~~d~~ 242 (336)
||||+++.+.|+|.+..+|++|+||||+++|++++|+++|++.+..++++|.|+|++|||.+.|++.|+++|.+++.|++
T Consensus 112 DaVp~~e~~~~~~~p~~~G~~hacGhkg~~A~~l~Aa~~L~~~~~~~~g~V~~if~pdEE~~~Ga~~~i~~g~~~~~~~i 191 (437)
T PLN02693 112 DALPIQEAVEWEHKSKIPGKMHACGHDGHVAMLLGAAKILQEHRHHLQGTVVLIFQPAEEGLSGAKKMREEGALKNVEAI 191 (437)
T ss_pred CCCcCCCCCCCCCCCCCCCCEECCcchHHHHHHHHHHHHHHhCcccCCceEEEEEEEcccchhhHHHHHHCCCCCCCCEE
Confidence 99999887778888878899999999999999999999999876677899999999999966799999999988777888
Q ss_pred EEEEeCCCCCceeEEeccCCccceeEEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhhccCCCCCceEEEEEE
Q 019753 243 FAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVSLSLWI 322 (336)
Q Consensus 243 i~~ept~~~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~P~~G~NAI~~a~~~i~~L~~l~~~~~~~~~~~tl~vg~I 322 (336)
+..|..+..+.|.+..+.|..++|..+++|+++|+++|++.|+.|+|||..++++|.+|+++..+..++.++.++|+|.|
T Consensus 192 ig~h~~p~~~~g~~~~~~g~~~~G~~~~~i~v~Gk~aHaa~P~~G~nAI~~aa~~i~~l~~~~~~~~~~~~~~ti~vg~i 271 (437)
T PLN02693 192 FGIHLSPRTPFGKAASRAGSFMAGAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDPLDSKVVTVSKV 271 (437)
T ss_pred EEEecCCCCCCeeEEeccCcccccceEEEEEEEcccccCCCCCCCcCHHHHHHHHHHHHHHHhcccCCCCCCcEEEEEEE
Confidence 88777766667877777788888999999999999999999999999999999999999998655555667789999999
Q ss_pred EecCCCc-CCCCC
Q 019753 323 ITTHFAL-NPSFG 334 (336)
Q Consensus 323 ~gG~~~~-~p~~~ 334 (336)
+||+..+ +|+.+
T Consensus 272 ~GG~~~NvVPd~a 284 (437)
T PLN02693 272 NGGNAFNVIPDSI 284 (437)
T ss_pred EcCCCCceECCeE
Confidence 9998765 88864
No 3
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=100.00 E-value=1.7e-44 Score=353.70 Aligned_cols=240 Identities=44% Similarity=0.655 Sum_probs=223.5
Q ss_pred chHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHhCCCeEEEecC-CceEEEEecCC-CCCeEEEEeccCcccCCCccC
Q 019753 95 ETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLA-KTGIRAWVGTG-GPPFVALRADMDALPIQEAVE 172 (336)
Q Consensus 95 ~~~~~li~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v~~~~~-~~nvia~i~g~-~~p~I~l~~H~DtVP~~~~~~ 172 (336)
...+++++++|+||++||++++|+++++||.++|+++|+++....+ +++++|.++++ ++|+|+|+++||.+|..+.+.
T Consensus 9 ~~~~~l~~~rr~lH~~PEL~f~E~~Ta~~i~~~L~~~g~~~~~~~~~~TGvva~~~~g~~g~tIalRAD~DALPi~E~t~ 88 (392)
T COG1473 9 ELKDELIEWRRDLHEHPELGFEEYRTAAYIAEKLEELGFEVVEVGGGKTGVVATLKGGKPGPTIALRADMDALPIQEETG 88 (392)
T ss_pred hhhHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHcCCeeEeccCCceEEEEEEcCCCCCCEEEEEeecccCccccccC
Confidence 4578999999999999999999999999999999999999544443 79999999976 667999999999999999999
Q ss_pred CccccccCCeeeecCCcHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCcchHHHHHHcCCCCC-CcEEEEEEeCCCC
Q 019753 173 WEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALED-VEAIFAVHVSHEH 251 (336)
Q Consensus 173 ~pf~~~~~G~~~g~G~dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g~Ga~~li~~g~~~~-~d~~i~~ept~~~ 251 (336)
.||.++.+|++|+||||+++|++|+++++|++....++|+|+|+|+|.||+++|++.|+++|.+++ +|++|..|+.+..
T Consensus 89 ~~~~S~~~G~mHACGHD~Hta~lLgaA~~L~~~~~~~~Gtv~~ifQPAEE~~~Ga~~mi~~G~~~~~vD~v~g~H~~p~~ 168 (392)
T COG1473 89 LPFASKNPGVMHACGHDGHTAILLGAALALAEHKDNLPGTVRLIFQPAEEGGGGAKAMIEDGVFDDFVDAVFGLHPGPGL 168 (392)
T ss_pred CCcccCCCCCcccCCchHHHHHHHHHHHHHHhhhhhCCcEEEEEecccccccccHHHHHhcCCccccccEEEEecCCCCC
Confidence 999999999999999999999999999999987678999999999999999889999999999999 9999999998766
Q ss_pred CceeEEeccCCccceeEEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhhccCCCCCceEEEEEEEecCCC-cC
Q 019753 252 PTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVSLSLWIITTHFA-LN 330 (336)
Q Consensus 252 ~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~P~~G~NAI~~a~~~i~~L~~l~~~~~~~~~~~tl~vg~I~gG~~~-~~ 330 (336)
+.|.+.++.|..+++...++|+++|+++|++.||.|+||+.+++.++.+|+.+.++..+|.++.++++|+++||++. ++
T Consensus 169 ~~g~v~~~~G~~~aa~d~~~i~~~GkggH~a~Ph~~~d~i~aa~~~v~~lq~ivsr~~~p~~~~vv~vg~~~aG~a~NVI 248 (392)
T COG1473 169 PVGTVALRPGALMAAADEFEITFKGKGGHAAAPHLGIDALVAAAQLVTALQTIVSRNVDPLDSAVVTVGKIEAGTAANVI 248 (392)
T ss_pred CCceEEeecccceeecceEEEEEEeCCcccCCcccccCHHHHHHHHHHHHHHHHhcccCCccCeEEEEEEecCCCcCCcC
Confidence 78999999998888999999999999999999999999999999999999999999888888899999999999876 48
Q ss_pred CCCC
Q 019753 331 PSFG 334 (336)
Q Consensus 331 p~~~ 334 (336)
|+.+
T Consensus 249 pd~A 252 (392)
T COG1473 249 PDSA 252 (392)
T ss_pred CCee
Confidence 8865
No 4
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=100.00 E-value=2.5e-40 Score=322.26 Aligned_cols=234 Identities=45% Similarity=0.703 Sum_probs=201.2
Q ss_pred HHHHHHhhcCCCCCccHHHHHHHHHHHHHhCCCeEEE-ecCCceEEEEecCC-CCCeEEEEeccCcccCCCccCCccccc
Q 019753 101 KSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKY-PLAKTGIRAWVGTG-GPPFVALRADMDALPIQEAVEWEYKSK 178 (336)
Q Consensus 101 i~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v~~-~~~~~nvia~i~g~-~~p~I~l~~H~DtVP~~~~~~~pf~~~ 178 (336)
.+++++|++|||+|++|.++++||.++|+++|+++++ ....+|++++++++ ++|+|+|+|||||||.++++.+||...
T Consensus 2 ~~~~~~L~~ips~s~~E~~~a~~l~~~l~~~g~~~~~~~~~~~~vva~~~~~~~~~~i~l~gH~DtVp~~~~~~~pf~~~ 81 (363)
T TIGR01891 2 TDIRRHLHEHPELSFEEFKTSSLIAEALESLGIEVRRGVGGATGVVATIGGGKPGPVVALRADMDALPIQEQTDLPYKST 81 (363)
T ss_pred hHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCceEecCCCCcEEEEEEeCCCCCCEEEEEeccCCCCcccccCCCcccC
Confidence 5789999999999999999999999999999999886 34568999999764 568999999999999988778999977
Q ss_pred cCCeeeecCCcHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCcchHHHHHHcCCCCCCcEEEEEEeCCCCCceeEEe
Q 019753 179 VAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGS 258 (336)
Q Consensus 179 ~~G~~~g~G~dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g~Ga~~li~~g~~~~~d~~i~~ept~~~~~G~i~~ 258 (336)
.+|++||||+|+++|++++|++.|++.+..++++|.|+|++|||.+.|++++++++.++++|++|++||++..+.+.+..
T Consensus 82 ~~g~l~g~G~~~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~G~~~~~~~~~~~~~d~~i~~e~~~~~~~~~~~~ 161 (363)
T TIGR01891 82 NPGVMHACGHDLHTAILLGTAKLLKKLADLLEGTVRLIFQPAEEGGGGATKMIEDGVLDDVDAILGLHPDPSIPAGTVGL 161 (363)
T ss_pred CCCceecCcCHHHHHHHHHHHHHHHhchhhCCceEEEEEeecCcCcchHHHHHHCCCCCCcCEEEEECCCCCCCCeEEEE
Confidence 78999999999999999999999988666678999999999999988999999988887889999999976555565544
Q ss_pred ccCCccceeEEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhhccCCCCCceEEEEEEEecCCCc-CCCCC
Q 019753 259 RPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVSLSLWIITTHFAL-NPSFG 334 (336)
Q Consensus 259 ~~G~~~aG~~~~~I~v~G~~aHas~P~~G~NAI~~a~~~i~~L~~l~~~~~~~~~~~tl~vg~I~gG~~~~-~p~~~ 334 (336)
..+..++|+.+++|+++|+++|++.|+.|+|||..+++++.+|+++..+..++....++|+|.|+||++.+ +|+.+
T Consensus 162 ~~~~~~~g~~~~~i~~~G~~~Has~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~i~~i~gG~~~nvvP~~~ 238 (363)
T TIGR01891 162 RPGTIMAAADKFEVTIHGKGAHAARPHLGRDALDAAAQLVVALQQIVSRNVDPSRPAVVTVGIIEAGGAPNVIPDKA 238 (363)
T ss_pred CCCcceeecceEEEEEEeecccccCcccccCHHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEEcCCCCcEECCee
Confidence 45555668889999999999999889999999999999999999874333333446799999999998764 78754
No 5
>PRK06915 acetylornithine deacetylase; Validated
Probab=100.00 E-value=7.6e-38 Score=310.40 Aligned_cols=240 Identities=16% Similarity=0.160 Sum_probs=199.4
Q ss_pred hHHHHHHHhcCcchHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHhCCCeEEEe--------------------cCCc
Q 019753 83 CSKEVMELARRPETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYP--------------------LAKT 142 (336)
Q Consensus 83 ~~~~i~~~~~~~~~~~~li~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v~~~--------------------~~~~ 142 (336)
.+++|++.++ +.++++++++++|++|||+|++|.+++++|.++|+++|+++++. ..++
T Consensus 4 ~~~~~~~~~~--~~~~~~~~~l~~lv~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (422)
T PRK06915 4 LKKQICDYIE--SHEEEAVKLLKRLIQEKSVSGDESGAQAIVIEKLRELGLDLDIWEPSFKKLKDHPYFVSPRTSFSDSP 81 (422)
T ss_pred HHHHHHHHHH--hhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhcCCeeEEeecchhhhhcccccCCcccccCCCc
Confidence 4788999998 88899999999999999999999999999999999999997642 1368
Q ss_pred eEEEEecCC-CCCeEEEEeccCcccCCC---ccCCccccc-cCCeeeecCC-c--HHHHHHHHHHHHHHHcCCCCCceEE
Q 019753 143 GIRAWVGTG-GPPFVALRADMDALPIQE---AVEWEYKSK-VAGKMHACGH-D--AHVAMLIGAAKILKSREHLLKGTVI 214 (336)
Q Consensus 143 nvia~i~g~-~~p~I~l~~H~DtVP~~~---~~~~pf~~~-~~G~~~g~G~-d--g~~A~~L~Aa~~L~~~~~~l~g~I~ 214 (336)
||++++++. ++|+|+|+|||||||+++ |+.+||.+. .+|++||||+ | |+++++|.|++.|++.+..++++|.
T Consensus 82 nlia~~~g~~~~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~v~ 161 (422)
T PRK06915 82 NIVATLKGSGGGKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIESGIELKGDVI 161 (422)
T ss_pred eEEEEEcCCCCCCeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCcEE
Confidence 999999764 568999999999999864 556699986 5899999997 5 7777788899999988777889999
Q ss_pred EEEecCCCCc-chHHHHHHcCCCCCCcEEEEEEeCCCCCceeEEeccCCccceeEEEEEEEEeecCCCCCCCCCCCHHHH
Q 019753 215 LIFQPAEEAG-NGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLA 293 (336)
Q Consensus 215 ~ift~dEE~g-~Ga~~li~~g~~~~~d~~i~~ept~~~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~P~~G~NAI~~ 293 (336)
|+|++|||.| .|+..++..++ +.|++|+.||+.. .+.. + +.|..+++|+++|+++|+|.|+.|+|||..
T Consensus 162 ~~~~~dEE~g~~G~~~~~~~~~--~~d~~i~~ep~~~----~i~~--~--~~G~~~~~i~v~G~~~H~s~p~~g~nAi~~ 231 (422)
T PRK06915 162 FQSVIEEESGGAGTLAAILRGY--KADGAIIPEPTNM----KFFP--K--QQGSMWFRLHVKGKAAHGGTRYEGVSAIEK 231 (422)
T ss_pred EEEecccccCCcchHHHHhcCc--CCCEEEECCCCCc----ccee--e--cccEEEEEEEEEeeccccCCCCcCcCHHHH
Confidence 9999999987 48888888764 4799999987652 2221 1 237899999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhc----cCCC-----CCceEEEEEEEecCCC-cCCCCC
Q 019753 294 ASAAVISLQGLVSRE----ANPL-----DSQVSLSLWIITTHFA-LNPSFG 334 (336)
Q Consensus 294 a~~~i~~L~~l~~~~----~~~~-----~~~tl~vg~I~gG~~~-~~p~~~ 334 (336)
+++++.+|+++.... ..+. .+.++|++.|+||+.. ++|+.+
T Consensus 232 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~t~~v~~i~gG~~~nvvP~~a 282 (422)
T PRK06915 232 SMFVIDHLRKLEEKRNDRITDPLYKGIPIPIPINIGKIEGGSWPSSVPDSV 282 (422)
T ss_pred HHHHHHHHHHHHHHhccccCCCcccCCCCCceEeEEEeeCCCCCCccCcEE
Confidence 999999999875321 1121 2458999999999876 488753
No 6
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=1.3e-36 Score=297.14 Aligned_cols=228 Identities=21% Similarity=0.235 Sum_probs=192.0
Q ss_pred HHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHhCCCeEEEe---cCCceEEEEecCCCCCeEEEEeccCcccCCC---cc
Q 019753 98 DWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYP---LAKTGIRAWVGTGGPPFVALRADMDALPIQE---AV 171 (336)
Q Consensus 98 ~~li~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v~~~---~~~~nvia~i~g~~~p~I~l~~H~DtVP~~~---~~ 171 (336)
+++++++++|+++||+|++|.++++||.++|+++|++++.. ++++|++++++++ .|+|+|+|||||||+++ |+
T Consensus 2 ~~~~~~l~~Lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~l~a~~g~~-~~~il~~~H~DtVp~~~~~~w~ 80 (377)
T PRK08588 2 EEKIQILADIVKINSVNDNEIEVANYLQDLFAKHGIESKIVKVNDGRANLVAEIGSG-SPVLALSGHMDVVAAGDVDKWT 80 (377)
T ss_pred hHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCCCceEEEecCCCCceEEEEeCCC-CceEEEEeeecccCCCCcccCc
Confidence 57889999999999999999999999999999999998754 3568999999554 58999999999999864 56
Q ss_pred CCccccc-cCCeeeecCC-c--HHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-chHHHHHHcCCCCCCcEEEEEE
Q 019753 172 EWEYKSK-VAGKMHACGH-D--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-NGAKRMMADGALEDVEAIFAVH 246 (336)
Q Consensus 172 ~~pf~~~-~~G~~~g~G~-d--g~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g-~Ga~~li~~g~~~~~d~~i~~e 246 (336)
.+||+.. .+|++||||+ | ++++++|.|++.|++.+..++++|.|+|++|||.| .|+++|+++++++++|++++.|
T Consensus 81 ~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~l~~~~dEE~g~~G~~~~~~~~~~~~~d~~i~~e 160 (377)
T PRK08588 81 YDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKEQGQLLNGTIRLLATAGEEVGELGAKQLTEKGYADDLDALIIGE 160 (377)
T ss_pred CCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHHcCCCCCCcEEEEEEcccccCchhHHHHHhcCccCCCCEEEEec
Confidence 6699854 6899999997 4 78899999999999887778899999999999987 5999999998887889999999
Q ss_pred eCCCCCceeEEeccCCccceeEEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhhc---cCCCCCceEEEEEEE
Q 019753 247 VSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSRE---ANPLDSQVSLSLWII 323 (336)
Q Consensus 247 pt~~~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~P~~G~NAI~~a~~~i~~L~~l~~~~---~~~~~~~tl~vg~I~ 323 (336)
|+.. ..+..+ .|..+++|+++|+++|++.|+.|+|||..+++++.+|+++..+. .+..+.+++|++.|+
T Consensus 161 p~~~---~i~~~~-----~G~~~~~i~~~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~t~~v~~i~ 232 (377)
T PRK08588 161 PSGH---GIVYAH-----KGSMDYKVTSTGKAAHSSMPELGVNAIDPLLEFYNEQKEYFDSIKKHNPYLGGLTHVVTIIN 232 (377)
T ss_pred CCCc---eeEEEE-----EEEEEEEEEEEeechhccCCccccCHHHHHHHHHHHHHHHhhhhcccCccCCCCceeeeEEe
Confidence 8642 222222 27889999999999999999999999999999999998864321 223457899999999
Q ss_pred ecCCC-cCCCCC
Q 019753 324 TTHFA-LNPSFG 334 (336)
Q Consensus 324 gG~~~-~~p~~~ 334 (336)
||+.. ++|+.+
T Consensus 233 gG~~~nvip~~~ 244 (377)
T PRK08588 233 GGEQVNSVPDEA 244 (377)
T ss_pred CCCcCCcCCCeE
Confidence 99875 488754
No 7
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=2.6e-36 Score=299.47 Aligned_cols=234 Identities=13% Similarity=0.098 Sum_probs=191.6
Q ss_pred HHHHHhcCcchHHHHHHHHHHhhcCCCCC--c-cHHHHHHHHHHHHHhCCCeEEEec-----C------CceEEEEecCC
Q 019753 86 EVMELARRPETVDWLKSVRRTIHQNPELA--F-QEFETSRLLRAELDRMEIGYKYPL-----A------KTGIRAWVGTG 151 (336)
Q Consensus 86 ~i~~~~~~~~~~~~li~l~~~Lv~iPs~s--g-~E~~~~~~l~~~L~~~G~~v~~~~-----~------~~nvia~i~g~ 151 (336)
+|.+.++ +.++++++++++|++|||++ + +|.++++||.++|+++|++++... . ++|++++++++
T Consensus 4 ~~~~~~~--~~~~~~~~~l~~Lv~i~S~~~~g~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~nlia~~~g~ 81 (427)
T PRK13013 4 RLFAAIE--ARRDDLVALTQDLIRIPTLNPPGRAYREICEFLAARLAPRGFEVELIRAEGAPGDSETYPRWNLVARRQGA 81 (427)
T ss_pred HHHHHHH--HhHHHHHHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHHCCCceEEEecCCCCcccccCCcceEEEEecCC
Confidence 4677777 78899999999999999986 3 578999999999999999987542 1 46999999764
Q ss_pred -CCCeEEEEeccCcccCCC-ccCCccccc-cCCeeeecCC---cHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-
Q 019753 152 -GPPFVALRADMDALPIQE-AVEWEYKSK-VAGKMHACGH---DAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG- 224 (336)
Q Consensus 152 -~~p~I~l~~H~DtVP~~~-~~~~pf~~~-~~G~~~g~G~---dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g- 224 (336)
++|+|+|+|||||||+++ |+.+||++. .+|++||||. |++++++|.|+++|++.+..++++|.|+|++|||.|
T Consensus 82 ~~~~~i~l~gH~DvVp~~~~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~ 161 (427)
T PRK13013 82 RDGDCVHFNSHHDVVEVGHGWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLAVYPDFAGSIEISGTADEESGG 161 (427)
T ss_pred CCCCEEEEEeccccCCCCCCCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHHhCCCCCccEEEEEEeccccCC
Confidence 568999999999999864 688899975 5899998874 699999999999999877678899999999999987
Q ss_pred -chHHHHHHcCCCC--CCcEEEEEEeCCCCCceeEEeccCCccceeEEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHH
Q 019753 225 -NGAKRMMADGALE--DVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISL 301 (336)
Q Consensus 225 -~Ga~~li~~g~~~--~~d~~i~~ept~~~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~P~~G~NAI~~a~~~i~~L 301 (336)
+|.++|++++.++ ++|++|+.||+.. ..+... ..|..+++|+++|+++|++.|+.|+|||..++++|.+|
T Consensus 162 ~~g~~~l~~~~~~~~~~~d~~i~~ep~~~---~~i~~~----~~G~~~~~i~v~G~~~H~~~p~~g~nai~~~~~~l~~l 234 (427)
T PRK13013 162 FGGVAYLAEQGRFSPDRVQHVIIPEPLNK---DRICLG----HRGVWWAEVETRGRIAHGSMPFLGDSAIRHMGAVLAEI 234 (427)
T ss_pred hhHHHHHHhcCCccccCCCEEEEecCCCC---CceEEe----eeeEEEEEEEEEccccccCCCCcCcCHHHHHHHHHHHH
Confidence 4888999888776 5699999998642 123222 23788999999999999999999999999999999999
Q ss_pred Hhhhhh-----ccC-C-----CCCceEEEEEEEecCCC
Q 019753 302 QGLVSR-----EAN-P-----LDSQVSLSLWIITTHFA 328 (336)
Q Consensus 302 ~~l~~~-----~~~-~-----~~~~tl~vg~I~gG~~~ 328 (336)
+++..+ ... + ....++|++.|+||+..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~gG~~~ 272 (427)
T PRK13013 235 EERLFPLLATRRTAMPVVPEGARQSTLNINSIHGGEPE 272 (427)
T ss_pred HHHhhhhhhcccccCCCCCcccCCCceeeeEEeCCCcc
Confidence 765311 000 0 13579999999999654
No 8
>PRK06837 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=2e-35 Score=294.11 Aligned_cols=244 Identities=14% Similarity=0.091 Sum_probs=202.1
Q ss_pred cchHHhHHHHHHHhcCcchHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHhCCCeEEEe-------------------
Q 019753 78 VWSRACSKEVMELARRPETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYP------------------- 138 (336)
Q Consensus 78 ~~~~~~~~~i~~~~~~~~~~~~li~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v~~~------------------- 138 (336)
|.+.++++++.+.++ +.++++++++++|++|||+|++|.++++||.++|+++|+++++.
T Consensus 2 ~~~~~~~~~~~~~i~--~~~~~~~~~l~~li~ipS~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (427)
T PRK06837 2 MLTPDLTQRILAAVD--AGFDAQVAFTQDLVRFPSTRGAEAPCQDFLARAFRERGYEVDRWSIDPDDLKSHPGAGPVEID 79 (427)
T ss_pred CCchHHHHHHHHHHH--hhhHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHCCCceEEecCCHHHhhhcccccccccc
Confidence 445677888999999 88999999999999999999999999999999999999997642
Q ss_pred -cCCceEEEEecCC--CCCeEEEEeccCcccCC---CccCCccccc-cCCeeeecCC-c--HHHHHHHHHHHHHHHcCCC
Q 019753 139 -LAKTGIRAWVGTG--GPPFVALRADMDALPIQ---EAVEWEYKSK-VAGKMHACGH-D--AHVAMLIGAAKILKSREHL 208 (336)
Q Consensus 139 -~~~~nvia~i~g~--~~p~I~l~~H~DtVP~~---~~~~~pf~~~-~~G~~~g~G~-d--g~~A~~L~Aa~~L~~~~~~ 208 (336)
++++||++++++. .+|+|+|+|||||||++ .|+.+||+++ .+|++||||+ | ++++++|.|++.|++.+..
T Consensus 80 ~~~~~nl~a~~~g~~~~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~~~ 159 (427)
T PRK06837 80 YSGAPNVVGTYRPAGKTGRSLILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRAAGLA 159 (427)
T ss_pred cCCCceEEEEecCCCCCCCeEEEEeecccCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHHcCCC
Confidence 2468999999763 36899999999999986 4788899876 5799999997 4 7888889899999988777
Q ss_pred CCceEEEEEecCCCCc-chHHHHHHcCCCCCCcEEEEEEeCCCCCceeEEeccCCccceeEEEEEEEEeecCCCCCCCCC
Q 019753 209 LKGTVILIFQPAEEAG-NGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRS 287 (336)
Q Consensus 209 l~g~I~~ift~dEE~g-~Ga~~li~~g~~~~~d~~i~~ept~~~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~P~~G 287 (336)
++++|.|+|++|||.+ .|+..++..++ ..|++|+.||+.. .+.. |. .|..+++|+++|+++|++.|+.|
T Consensus 160 ~~~~i~~~~~~dEE~~g~g~~~~~~~~~--~~d~~iv~ep~~~----~i~~--~~--~G~~~~~i~v~G~~~Hs~~p~~g 229 (427)
T PRK06837 160 PAARVHFQSVIEEESTGNGALSTLQRGY--RADACLIPEPTGE----KLVR--AQ--VGVIWFRLRVRGAPVHVREAGTG 229 (427)
T ss_pred CCCcEEEEEEeccccCCHhHHHHHhcCc--CCCEEEEcCCCCC----cccc--cc--ceeEEEEEEEEeeccccCCcccC
Confidence 8899999999999976 58888877764 4799999988642 2322 21 37899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhhhc-----c-C----CCCCceEEEEEEEecCCC-cCCCC
Q 019753 288 VDPVLAASAAVISLQGLVSRE-----A-N----PLDSQVSLSLWIITTHFA-LNPSF 333 (336)
Q Consensus 288 ~NAI~~a~~~i~~L~~l~~~~-----~-~----~~~~~tl~vg~I~gG~~~-~~p~~ 333 (336)
+||+..+++++.+|+++.... . . ...+.++|++.|+||... ++|+.
T Consensus 230 ~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~t~ni~~i~gG~~~nvVP~~ 286 (427)
T PRK06837 230 ANAIDAAYHLIQALRELEAEWNARKASDPHFEDVPHPINFNVGIIKGGDWASSVPAW 286 (427)
T ss_pred cCHHHHHHHHHHHHHHHHHHHhhcccCCCcccCCCCceeEeeeeEeCCCCCCccCCE
Confidence 999999999999998764321 0 0 113468999999999765 48864
No 9
>PRK13004 peptidase; Reviewed
Probab=100.00 E-value=1.3e-34 Score=285.50 Aligned_cols=239 Identities=15% Similarity=0.123 Sum_probs=196.6
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHhCCCeEEEecCCceEEEEecCCCCCeEEEEeccC
Q 019753 84 SKEVMELARRPETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMD 163 (336)
Q Consensus 84 ~~~i~~~~~~~~~~~~li~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v~~~~~~~nvia~i~g~~~p~I~l~~H~D 163 (336)
.+.+.++++ +.++++++++++|+++||+|++|.+++++|.++|+++|+++...+.+.|++++++++ .|+|+|+||+|
T Consensus 3 ~~~~~~~~~--~~~~~~~~~l~~lv~ips~s~~e~~~a~~l~~~l~~~G~~~~~~~~~~n~~a~~~~~-~~~i~~~~H~D 79 (399)
T PRK13004 3 FKLILMLAE--KYKADMTRFLRDLIRIPSESGDEKRVVKRIKEEMEKVGFDKVEIDPMGNVLGYIGHG-KKLIAFDAHID 79 (399)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCcEEEEcCCCeEEEEECCC-CcEEEEEeccC
Confidence 356888888 888999999999999999999999999999999999999865544457999999765 48999999999
Q ss_pred cccCCC---ccCCccccc-cCCeeeecCC-c--HHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc--chHHHHHHcC
Q 019753 164 ALPIQE---AVEWEYKSK-VAGKMHACGH-D--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG--NGAKRMMADG 234 (336)
Q Consensus 164 tVP~~~---~~~~pf~~~-~~G~~~g~G~-d--g~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g--~Ga~~li~~g 234 (336)
|||.++ |+.+||... .+|++||||+ | ++++++|+|++.|++.+..++++|.|+|++|||.+ .|++++++++
T Consensus 80 tVp~~~~~~w~~~P~~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~~~~EE~~~g~~~~~~~~~~ 159 (399)
T PRK13004 80 TVGIGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYAAKIIKDLGLDDEYTLYVTGTVQEEDCDGLCWRYIIEED 159 (399)
T ss_pred ccCCCChhhcccCCCccEEECCEEEeCCccccchHHHHHHHHHHHHHhcCCCCCCeEEEEEEcccccCcchhHHHHHHhc
Confidence 999864 566788864 5789999997 4 89999999999999887778899999999999974 3678888875
Q ss_pred CCCCCcEEEEEEeCCCCCceeEEeccCCccceeEEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhh--ccCCC
Q 019753 235 ALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSR--EANPL 312 (336)
Q Consensus 235 ~~~~~d~~i~~ept~~~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~P~~G~NAI~~a~~~i~~L~~l~~~--~~~~~ 312 (336)
.+ ++|++|++||+.. .+... ..|..+++|+++|+++|++.|+.|+|||..+++++.+|+.+... .....
T Consensus 160 ~~-~~d~~i~~e~~~~----~i~~~----~~G~~~~~v~v~G~~~Ha~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~ 230 (399)
T PRK13004 160 KI-KPDFVVITEPTDL----NIYRG----QRGRMEIRVETKGVSCHGSAPERGDNAIYKMAPILNELEELNPNLKEDPFL 230 (399)
T ss_pred CC-CCCEEEEccCCCC----ceEEe----cceEEEEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHhhccccccCCcC
Confidence 44 4799999998642 23321 12789999999999999999999999999999999999887532 22234
Q ss_pred CCceEEEEEEEecC-CC-cCCCCC
Q 019753 313 DSQVSLSLWIITTH-FA-LNPSFG 334 (336)
Q Consensus 313 ~~~tl~vg~I~gG~-~~-~~p~~~ 334 (336)
+..+++++.|.+|. +. ++|+.+
T Consensus 231 ~~~~~~v~~i~~g~~~~nvvP~~~ 254 (399)
T PRK13004 231 GKGTLTVSDIFSTSPSRCAVPDSC 254 (399)
T ss_pred CCceEEEeeeecCCCCCCccCCEE
Confidence 45689999999763 43 488753
No 10
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=100.00 E-value=2.7e-34 Score=284.61 Aligned_cols=237 Identities=16% Similarity=0.179 Sum_probs=196.5
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHhhcCCCCCccH---HHHHHHHHHHHHhCCCeEEEec----CCceEEEEecCCCCCeE
Q 019753 84 SKEVMELARRPETVDWLKSVRRTIHQNPELAFQE---FETSRLLRAELDRMEIGYKYPL----AKTGIRAWVGTGGPPFV 156 (336)
Q Consensus 84 ~~~i~~~~~~~~~~~~li~l~~~Lv~iPs~sg~E---~~~~~~l~~~L~~~G~~v~~~~----~~~nvia~i~g~~~p~I 156 (336)
.+++.+.++ +.++++++++++|+++||.+++| .++++||.++|+++|+++++.. .++||++++++.++|+|
T Consensus 25 ~~~~~~~~~--~~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~lia~~~g~~~~~i 102 (410)
T PRK06133 25 DAELLAAAQ--QEQPAYLDTLKELVSIESGSGDAEGLKQVAALLAERLKALGAKVERAPTPPSAGDMVVATFKGTGKRRI 102 (410)
T ss_pred HHHHHHHHH--HhHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEEEECCCCCceE
Confidence 456888888 88899999999999999999765 4899999999999999987643 35799999976546899
Q ss_pred EEEeccCcccCCC-ccCCccccccCCeeeecCC---cHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-chHHHHH
Q 019753 157 ALRADMDALPIQE-AVEWEYKSKVAGKMHACGH---DAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-NGAKRMM 231 (336)
Q Consensus 157 ~l~~H~DtVP~~~-~~~~pf~~~~~G~~~g~G~---dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g-~Ga~~li 231 (336)
+|+|||||||.++ |+..||. ..+|++||+|. +++++++|.|+++|++.+..++++|.|+|++|||.+ .|++.++
T Consensus 103 ll~~H~D~Vp~~~~w~~~Pf~-~~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~G~~~~~ 181 (410)
T PRK06133 103 MLIAHMDTVYLPGMLAKQPFR-IDGDRAYGPGIADDKGGVAVILHALKILQQLGFKDYGTLTVLFNPDEETGSPGSRELI 181 (410)
T ss_pred EEEeecCccCCCCccCCCCEE-EECCEEECCccccchHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCcccCCccHHHHH
Confidence 9999999999854 7778997 56799999984 489999999999999877677899999999999987 5999999
Q ss_pred HcCCCCCCcEEEEEEeCCCCCceeEEeccCCccceeEEEEEEEEeecCCCC-CCCCCCCHHHHHHHHHHHHHhhhhhccC
Q 019753 232 ADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAA-NPHRSVDPVLAASAAVISLQGLVSREAN 310 (336)
Q Consensus 232 ~~g~~~~~d~~i~~ept~~~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas-~P~~G~NAI~~a~~~i~~L~~l~~~~~~ 310 (336)
++.. .+.|++|++||+.. .+.+... ..|..+++|+++|+++|++ .|+.|+|||..+++++..|+++. .
T Consensus 182 ~~~~-~~~d~~i~~ep~~~--~~~v~~~----~~G~~~~~v~v~G~~~Hsg~~p~~g~nAi~~~~~~i~~l~~~~----~ 250 (410)
T PRK06133 182 AELA-AQHDVVFSCEPGRA--KDALTLA----TSGIATALLEVKGKASHAGAAPELGRNALYELAHQLLQLRDLG----D 250 (410)
T ss_pred HHHh-ccCCEEEEeCCCCC--CCCEEEe----ccceEEEEEEEEeeccccCCCcccCcCHHHHHHHHHHHHHhcc----C
Confidence 7633 35799999998642 1334332 1378999999999999986 69999999999999999998863 2
Q ss_pred CCCCceEEEEEEEecCCCc-CCCCC
Q 019753 311 PLDSQVSLSLWIITTHFAL-NPSFG 334 (336)
Q Consensus 311 ~~~~~tl~vg~I~gG~~~~-~p~~~ 334 (336)
+....++|++.|+||+..+ +|+.+
T Consensus 251 ~~~~~t~~~~~i~gG~~~nvIP~~~ 275 (410)
T PRK06133 251 PAKGTTLNWTVAKAGTNRNVIPASA 275 (410)
T ss_pred CCCCeEEEeeEEECCCCCceeCCcc
Confidence 2345789999999998764 88764
No 11
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=100.00 E-value=4.6e-34 Score=281.36 Aligned_cols=237 Identities=15% Similarity=0.131 Sum_probs=191.3
Q ss_pred HHHHHhcCcchHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHhCCCeEEEecCCceEEEEecCCCCCeEEEEeccCcc
Q 019753 86 EVMELARRPETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDAL 165 (336)
Q Consensus 86 ~i~~~~~~~~~~~~li~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v~~~~~~~nvia~i~g~~~p~I~l~~H~DtV 165 (336)
+|.+.++ +.++++++++++|+++||++++|.+++++|.++|+++|+++.......|+++.++++ .|+|+|+||+|||
T Consensus 3 ~~~~~~~--~~~~~~~~~l~~Lv~ips~s~~e~~~~~~l~~~l~~~g~~~~~~~~~~~v~~~~g~~-~~~l~l~~H~DtV 79 (395)
T TIGR03526 3 QIKSEAE--KYRGDMIRFLRDLVAIPSESGDEGRVALRIKQEMEKLGFDKVEIDPMGNVLGYIGHG-PKLIAMDAHIDTV 79 (395)
T ss_pred hHHHHHH--HHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCceEEEcCCCcEEEEeCCC-CCEEEEEeecccc
Confidence 3666776 778999999999999999999999999999999999999854333346899998543 5799999999999
Q ss_pred cCCC---ccCCccccc-cCCeeeecC---CcHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc--chHHHHHHcCCC
Q 019753 166 PIQE---AVEWEYKSK-VAGKMHACG---HDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG--NGAKRMMADGAL 236 (336)
Q Consensus 166 P~~~---~~~~pf~~~-~~G~~~g~G---~dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g--~Ga~~li~~g~~ 236 (336)
|+++ |+.+||.+. .+|++|||| +||+++++|.|++.|++.+..+++++.|++++|||.+ .|++.+++++.+
T Consensus 80 p~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~~~g~~~~~~~~~~~~ 159 (395)
T TIGR03526 80 GIGDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLVTGTVQEEDCDGLCWQYIIEEDKI 159 (395)
T ss_pred CCCCcccccCCCCceEEECCEEEecCccccchhHHHHHHHHHHHHHcCCCCCceEEEEEecccccCCcHhHHHHHhccCC
Confidence 9865 566688875 578999999 4699999999999999877667789999999999954 366777776555
Q ss_pred CCCcEEEEEEeCCCCCceeEEeccCCccceeEEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhhc-cCC-CCC
Q 019753 237 EDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSRE-ANP-LDS 314 (336)
Q Consensus 237 ~~~d~~i~~ept~~~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~P~~G~NAI~~a~~~i~~L~~l~~~~-~~~-~~~ 314 (336)
++|++|++||+.. .+.. | ..|..+++|+++|+++|++.|+.|+|||..+++++.+|+++.... .++ .+.
T Consensus 160 -~~d~~i~~ep~~~----~i~~--g--~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~ 230 (395)
T TIGR03526 160 -KPEFVVITEPTDM----NIYR--G--QRGRMEIKVTVKGVSCHGSAPERGDNAIYKMAPILKELSQLNANLVEDPFLGK 230 (395)
T ss_pred -CCCEEEecCCCCc----eEEE--E--cceEEEEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHhhhhhcCCcccCc
Confidence 4799999998642 3332 2 137899999999999999999999999999999999998875321 222 345
Q ss_pred ceEEEEEEEecC-C-CcCCCCC
Q 019753 315 QVSLSLWIITTH-F-ALNPSFG 334 (336)
Q Consensus 315 ~tl~vg~I~gG~-~-~~~p~~~ 334 (336)
.++|++.|++|. . +++|+.+
T Consensus 231 ~~~~v~~i~~g~~~~nviP~~~ 252 (395)
T TIGR03526 231 GTLTVSEIFFSSPSRCAVADGC 252 (395)
T ss_pred cceeeeeeecCCCCCCccCCeE
Confidence 799999999875 3 3588753
No 12
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=100.00 E-value=3.9e-34 Score=281.73 Aligned_cols=236 Identities=15% Similarity=0.162 Sum_probs=190.2
Q ss_pred HHHHHhcCcchHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHhCCCeEEEecCCceEEEEecCCCCCeEEEEeccCcc
Q 019753 86 EVMELARRPETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDAL 165 (336)
Q Consensus 86 ~i~~~~~~~~~~~~li~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v~~~~~~~nvia~i~g~~~p~I~l~~H~DtV 165 (336)
++.+.++ +.++++++++++|+++||++++|.++++||.++|+++|+++.......|++++++.+ +|+|+|+||||||
T Consensus 3 ~~~~~i~--~~~~~~~~~~~~lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~n~~~~~g~~-~~~l~l~~H~DtV 79 (395)
T TIGR03320 3 QIKSEAK--KYRGDMIRFLRDLVAIPSESGDEKRVAERIKEEMEKLGFDKVEIDPMGNVLGYIGHG-PKLIAMDAHIDTV 79 (395)
T ss_pred hHHHHHH--HHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHhCCcEEEECCCCCEEEEeCCC-CcEEEEEeccccc
Confidence 3667776 778999999999999999999999999999999999999843333356899998543 5899999999999
Q ss_pred cCCC---ccCCccccc-cCCeeeecCC---cHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCcch--HHHHHHcCCC
Q 019753 166 PIQE---AVEWEYKSK-VAGKMHACGH---DAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNG--AKRMMADGAL 236 (336)
Q Consensus 166 P~~~---~~~~pf~~~-~~G~~~g~G~---dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g~G--a~~li~~g~~ 236 (336)
|+++ |+.+||.+. .+|++||||+ |+++|++|.|+++|++.+..++++|.|++++|||.++| .+.++++..+
T Consensus 80 p~~~~~~w~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~A~~~l~~~g~~~~~~i~~~~~~dEE~~~g~~~~~~~~~~~~ 159 (395)
T TIGR03320 80 GIGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLVTGTVQEEDCDGLCWQYIIEEDGI 159 (395)
T ss_pred CCCCccccccCCCceEEECCEEEecCccCccchHHHHHHHHHHHHHcCCCCCceEEEEecccccccCchHHHHHHHhcCC
Confidence 9864 566789875 5789999995 69999999999999987766788999999999997644 4567665444
Q ss_pred CCCcEEEEEEeCCCCCceeEEeccCCccceeEEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhhc-cCC-CCC
Q 019753 237 EDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSRE-ANP-LDS 314 (336)
Q Consensus 237 ~~~d~~i~~ept~~~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~P~~G~NAI~~a~~~i~~L~~l~~~~-~~~-~~~ 314 (336)
.+|++|++||+.. .+.. | ..|..+++|+++|+++|++.|+.|.|||..+++++.+|+++.... .++ .+.
T Consensus 160 -~~d~~iv~ep~~~----~i~~--g--~~G~~~~~v~~~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~ 230 (395)
T TIGR03320 160 -KPEFVVITEPTDM----NIYR--G--QRGRMEIKVTVKGVSCHGSAPERGDNAIYKMAPILKELSQLNANLVEDPFLGK 230 (395)
T ss_pred -CCCEEEEcCCCcc----ceEE--e--cceEEEEEEEEeeeccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCcccCc
Confidence 4799999998642 3332 2 137899999999999999999999999999999999998874321 122 345
Q ss_pred ceEEEEEEEecC-C-CcCCCC
Q 019753 315 QVSLSLWIITTH-F-ALNPSF 333 (336)
Q Consensus 315 ~tl~vg~I~gG~-~-~~~p~~ 333 (336)
.++|+|.|++|. . +++|+.
T Consensus 231 ~t~~v~~i~~g~~~~NviP~~ 251 (395)
T TIGR03320 231 GTLTVSEIFFSSPSRCAVADG 251 (395)
T ss_pred CceeeeeeecCCCCcCccCCE
Confidence 799999999885 3 358864
No 13
>PRK07522 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=2.5e-34 Score=281.25 Aligned_cols=227 Identities=15% Similarity=0.124 Sum_probs=184.6
Q ss_pred HHHHHHHHHhhcCCCCCccH-HHHHHHHHHHHHhCCCeEEEec----CCceEEEEecCCCCCeEEEEeccCcccCCC--c
Q 019753 98 DWLKSVRRTIHQNPELAFQE-FETSRLLRAELDRMEIGYKYPL----AKTGIRAWVGTGGPPFVALRADMDALPIQE--A 170 (336)
Q Consensus 98 ~~li~l~~~Lv~iPs~sg~E-~~~~~~l~~~L~~~G~~v~~~~----~~~nvia~i~g~~~p~I~l~~H~DtVP~~~--~ 170 (336)
.++++++++|++|||+|++| .++++||.++|+++|+++++.. .++||+++++++++|+|+|+|||||||+++ |
T Consensus 4 ~~~~~~l~~lv~i~S~s~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~nv~a~~~~~~~~~ill~~H~Dtv~~~~~~W 83 (385)
T PRK07522 4 MSSLDILERLVAFDTVSRDSNLALIEWVRDYLAAHGVESELIPDPEGDKANLFATIGPADRGGIVLSGHTDVVPVDGQAW 83 (385)
T ss_pred hhHHHHHHHHhCCCCcCCCccHHHHHHHHHHHHHcCCeEEEEecCCCCcccEEEEeCCCCCCeEEEEeecccccCCCCCC
Confidence 57899999999999999887 5999999999999999987532 357999999765568999999999999853 6
Q ss_pred cCCccccc-cCCeeeecCC---cHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-chHHHHHHcCC--CCCCcEEE
Q 019753 171 VEWEYKSK-VAGKMHACGH---DAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-NGAKRMMADGA--LEDVEAIF 243 (336)
Q Consensus 171 ~~~pf~~~-~~G~~~g~G~---dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g-~Ga~~li~~g~--~~~~d~~i 243 (336)
+.+||++. .+|++||||. |+++|++++|++.|++. .++++|.|+|++|||.+ .|+++|++... ..++|++|
T Consensus 84 ~~~pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~i~~~~~~dEE~g~~G~~~l~~~~~~~~~~~d~~i 161 (385)
T PRK07522 84 TSDPFRLTERDGRLYGRGTCDMKGFIAAALAAVPELAAA--PLRRPLHLAFSYDEEVGCLGVPSMIARLPERGVKPAGCI 161 (385)
T ss_pred CCCCCceEEECCEEEeccccccchHHHHHHHHHHHHHhC--CCCCCEEEEEEeccccCCccHHHHHHHhhhcCCCCCEEE
Confidence 77899976 5899999995 69999999999999875 46889999999999987 69999987521 12479999
Q ss_pred EEEeCCCCCceeEEeccCCccceeEEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhhccC--C----C--CCc
Q 019753 244 AVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREAN--P----L--DSQ 315 (336)
Q Consensus 244 ~~ept~~~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~P~~G~NAI~~a~~~i~~L~~l~~~~~~--~----~--~~~ 315 (336)
.++|+.. .+... ..|..+++|+++|+++|++.|+.|+||+..+++++..|+++..+... + + ..+
T Consensus 162 ~~ep~~~----~~~~~----~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 233 (385)
T PRK07522 162 VGEPTSM----RPVVG----HKGKAAYRCTVRGRAAHSSLAPQGVNAIEYAARLIAHLRDLADRLAAPGPFDALFDPPYS 233 (385)
T ss_pred EccCCCC----eeeee----ecceEEEEEEEEeeccccCCCccCcCHHHHHHHHHHHHHHHHHHHhhcCCCCcCCCCCcc
Confidence 9888642 23221 12688999999999999999999999999999999999886432211 1 1 136
Q ss_pred eEEEEEEEecCCC-cCCCCC
Q 019753 316 VSLSLWIITTHFA-LNPSFG 334 (336)
Q Consensus 316 tl~vg~I~gG~~~-~~p~~~ 334 (336)
++|++.|+||... ++|+.+
T Consensus 234 t~~i~~i~gG~~~nviP~~a 253 (385)
T PRK07522 234 TLQTGTIQGGTALNIVPAEC 253 (385)
T ss_pred eeEEeeeecCccccccCCce
Confidence 8999999999775 488764
No 14
>PRK07473 carboxypeptidase; Provisional
Probab=100.00 E-value=1.6e-33 Score=276.34 Aligned_cols=225 Identities=11% Similarity=0.127 Sum_probs=185.1
Q ss_pred hHHHHHHHHHHhhcCCCCCccHH---HHHHHHHHHHHhCCCeEEEecC----CceEEEEecCC--CCCeEEEEeccCccc
Q 019753 96 TVDWLKSVRRTIHQNPELAFQEF---ETSRLLRAELDRMEIGYKYPLA----KTGIRAWVGTG--GPPFVALRADMDALP 166 (336)
Q Consensus 96 ~~~~li~l~~~Lv~iPs~sg~E~---~~~~~l~~~L~~~G~~v~~~~~----~~nvia~i~g~--~~p~I~l~~H~DtVP 166 (336)
.++++++++++|++|||++++|. ++++|+.++|+++|++++.... .+|+++++++. .+|+|+|+|||||||
T Consensus 9 ~~~~~~~~l~~Lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~gH~DtV~ 88 (376)
T PRK07473 9 DSEAMLAGLRPWVECESPTWDAAAVNRMLDLAARDMAIMGATIERIPGRQGFGDCVRARFPHPRQGEPGILIAGHMDTVH 88 (376)
T ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCeEEEEeCCCCCCCCeEEEEecCCCCC
Confidence 36889999999999999999986 5677999999999999887432 24799998642 468999999999996
Q ss_pred C-CCccCCccccccCCeeeecC---CcHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-chHHHHHHcCCCCCCcE
Q 019753 167 I-QEAVEWEYKSKVAGKMHACG---HDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-NGAKRMMADGALEDVEA 241 (336)
Q Consensus 167 ~-~~~~~~pf~~~~~G~~~g~G---~dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g-~Ga~~li~~g~~~~~d~ 241 (336)
+ +.|+.+||. ..+|++|||| ||++++++|.|+++|++.+..++++|.|+|++|||.| .|++.+++++.. ..|+
T Consensus 89 ~~~~~~~~p~~-~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~~g~~~~~~~~~~-~~d~ 166 (376)
T PRK07473 89 PVGTLEKLPWR-REGNKCYGPGILDMKGGNYLALEAIRQLARAGITTPLPITVLFTPDEEVGTPSTRDLIEAEAA-RNKY 166 (376)
T ss_pred CCCCccCCCeE-EECCEEEcCchhhchHHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCcccCCccHHHHHHHhhc-cCCE
Confidence 5 556778996 5679999999 5699999999999999877667789999999999988 499999987543 4799
Q ss_pred EEEEEeCCCCCceeEEeccCCccceeEEEEEEEEeecCCCC-CCCCCCCHHHHHHHHHHHHHhhhhhccCCCCCceEEEE
Q 019753 242 IFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAA-NPHRSVDPVLAASAAVISLQGLVSREANPLDSQVSLSL 320 (336)
Q Consensus 242 ~i~~ept~~~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas-~P~~G~NAI~~a~~~i~~L~~l~~~~~~~~~~~tl~vg 320 (336)
+|++||+.. ..+.+..++ |..|++|+++|+++|++ .|+.|+|||..+++++.+|+++.. ...++|+|
T Consensus 167 ~iv~ep~~~-~~~v~~~~~-----G~~~~~v~~~G~~aHag~~p~~g~nAi~~~~~~i~~l~~~~~------~~~~~~vg 234 (376)
T PRK07473 167 VLVPEPGRP-DNGVVTGRY-----AIARFNLEATGRPSHAGATLSEGRSAIREMARQILAIDAMTT------EDCTFSVG 234 (376)
T ss_pred EEEeCCCCC-CCCEEEECe-----eeEEEEEEEEeEcCCCCCCcccCcCHHHHHHHHHHHHHHhcC------CCceEeEe
Confidence 999998742 112332222 78999999999999987 599999999999999999988732 24689999
Q ss_pred EEEecCCCc-CCCCC
Q 019753 321 WIITTHFAL-NPSFG 334 (336)
Q Consensus 321 ~I~gG~~~~-~p~~~ 334 (336)
.|+||++.+ +|+.+
T Consensus 235 ~i~gg~~~n~VP~~~ 249 (376)
T PRK07473 235 IVHGGQWVNCVATTC 249 (376)
T ss_pred eEEcCCCCcCCCCce
Confidence 999998764 88764
No 15
>PRK07338 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-33 Score=277.38 Aligned_cols=235 Identities=15% Similarity=0.154 Sum_probs=191.8
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHhhcCCCCCccH---HHHHHHHHHHHHhCCCeEEEec----------C-------Cce
Q 019753 84 SKEVMELARRPETVDWLKSVRRTIHQNPELAFQE---FETSRLLRAELDRMEIGYKYPL----------A-------KTG 143 (336)
Q Consensus 84 ~~~i~~~~~~~~~~~~li~l~~~Lv~iPs~sg~E---~~~~~~l~~~L~~~G~~v~~~~----------~-------~~n 143 (336)
..+++++++ +.++++++++++|+++||.|+++ .++++||.++|+++|++++..+ + +.|
T Consensus 5 ~~~~~~~~~--~~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~n 82 (402)
T PRK07338 5 ERAVLDLID--DRQAPMLEQLIAWAAINSGSRNLDGLARMAELLADAFAALPGEIELIPLPPVEVIDADGRTLEQAHGPA 82 (402)
T ss_pred HHHHHHHHh--hhHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecCCccccccccccccccCcCCe
Confidence 455888888 88999999999999999998764 6789999999999999987532 1 259
Q ss_pred EEEEecCCCCCeEEEEeccCcccCCCccCCcccc---ccCCeeeecCC---cHHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 019753 144 IRAWVGTGGPPFVALRADMDALPIQEAVEWEYKS---KVAGKMHACGH---DAHVAMLIGAAKILKSREHLLKGTVILIF 217 (336)
Q Consensus 144 via~i~g~~~p~I~l~~H~DtVP~~~~~~~pf~~---~~~G~~~g~G~---dg~~A~~L~Aa~~L~~~~~~l~g~I~~if 217 (336)
|+|+++++.+++|+|+|||||||++. .||+. ..+|++||||. +|+++++|+|+++|++.+..++++|.|+|
T Consensus 83 l~a~~~~~~~~~lll~gH~DvVp~~~---~Pf~~~~~~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~~~~~~~i~~~~ 159 (402)
T PRK07338 83 LHVSVRPEAPRQVLLTGHMDTVFPAD---HPFQTLSWLDDGTLNGPGVADMKGGIVVMLAALLAFERSPLADKLGYDVLI 159 (402)
T ss_pred EEEEECCCCCccEEEEeecCccCCCC---CcccCCeEeeCCEEECCcHHhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE
Confidence 99999654346899999999999853 78986 46899999985 58999999999999887767788999999
Q ss_pred ecCCCCcc-hHHHHHHcCCCCCCcEEEEEEeCCCCCceeEEeccCCccceeEEEEEEEEeecCCCCC-CCCCCCHHHHHH
Q 019753 218 QPAEEAGN-GAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAAN-PHRSVDPVLAAS 295 (336)
Q Consensus 218 t~dEE~g~-Ga~~li~~g~~~~~d~~i~~ept~~~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~-P~~G~NAI~~a~ 295 (336)
++|||.|+ |++.++++.. .+.++++++||+.. .+.+.... .|..+++|+++|+++|++. |+.|+|||..++
T Consensus 160 ~~dEE~g~~g~~~~~~~~~-~~~~~~i~~ep~~~--~~~v~~~~----kG~~~~~v~v~G~~aHs~~~p~~g~nAi~~~~ 232 (402)
T PRK07338 160 NPDEEIGSPASAPLLAELA-RGKHAALTYEPALP--DGTLAGAR----KGSGNFTIVVTGRAAHAGRAFDEGRNAIVAAA 232 (402)
T ss_pred ECCcccCChhhHHHHHHHh-ccCcEEEEecCCCC--CCcEEeec----ceeEEEEEEEEeEcccCCCCcccCccHHHHHH
Confidence 99999884 8888888743 34689999998632 24443221 2688999999999999997 999999999999
Q ss_pred HHHHHHHhhhhhccCCCCCceEEEEEEEecCCCc-CCCCC
Q 019753 296 AAVISLQGLVSREANPLDSQVSLSLWIITTHFAL-NPSFG 334 (336)
Q Consensus 296 ~~i~~L~~l~~~~~~~~~~~tl~vg~I~gG~~~~-~p~~~ 334 (336)
+++.+|+++..+ ....++|+|.|+||.+.+ +|+.+
T Consensus 233 ~~i~~l~~l~~~----~~~~t~~vg~i~gG~~~nvVP~~a 268 (402)
T PRK07338 233 ELALALHALNGQ----RDGVTVNVAKIDGGGPLNVVPDNA 268 (402)
T ss_pred HHHHHHHhhhcc----CCCcEEEEEEEecCCCCceecccc
Confidence 999999887422 235699999999998764 88764
No 16
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=100.00 E-value=8.5e-34 Score=276.53 Aligned_cols=229 Identities=20% Similarity=0.240 Sum_probs=183.2
Q ss_pred HHHHHHhhcCCCCCccHHHHHHHHHHHHHhCCCeEEEe--cCCceEEEEecCCCCCeEEEEeccCcccCCC---ccCCcc
Q 019753 101 KSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYP--LAKTGIRAWVGTGGPPFVALRADMDALPIQE---AVEWEY 175 (336)
Q Consensus 101 i~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v~~~--~~~~nvia~i~g~~~p~I~l~~H~DtVP~~~---~~~~pf 175 (336)
++++++|+++||+|++|.++++||.++|+++|+++++. .++.|++++.++ .+|+|+|+||+||||+++ |+.+||
T Consensus 2 ~~~l~~lv~ips~s~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~~~~~~g~-~~~~i~~~~H~DtVp~~~~~~W~~~p~ 80 (370)
T TIGR01246 2 TELAKELISRPSVTPNDAGCQDIIAERLEKLGFEIEWMHFGDTKNLWATRGT-GEPVLAFAGHTDVVPAGPEEQWSSPPF 80 (370)
T ss_pred hHHHHHHhcCCCCCcchHHHHHHHHHHHHHCCCEEEEEecCCCceEEEEecC-CCcEEEEEccccccCCCCccccccCCC
Confidence 57899999999999999999999999999999998763 345799998754 479999999999999863 677899
Q ss_pred ccc-cCCeeeecCC-c--HHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc--chHHHHHHcC--CCCCCcEEEEEEe
Q 019753 176 KSK-VAGKMHACGH-D--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG--NGAKRMMADG--ALEDVEAIFAVHV 247 (336)
Q Consensus 176 ~~~-~~G~~~g~G~-d--g~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g--~Ga~~li~~g--~~~~~d~~i~~ep 247 (336)
++. .+|++||||+ | +++++++.|++.+++.+..++++|.|+|++|||.+ .|++.+++.- ....+|++|+.||
T Consensus 81 ~~~~~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~~~~~G~~~~~~~~~~~~~~~d~~i~~ep 160 (370)
T TIGR01246 81 EPVERDGKLYGRGAADMKGSLAAFIVAAERFVKKNPDHKGSISLLITSDEEGTAIDGTKKVVETLMARDELIDYCIVGEP 160 (370)
T ss_pred CcEEECCEEEecccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeccccCCCcCHHHHHHHHHhcCCCCCEEEEcCC
Confidence 875 6899999997 5 78888888888888776678899999999999986 4888887531 1124799999998
Q ss_pred CCCCCce-eEEeccCCccceeEEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhhc-cCCCCCceEEEEEEEec
Q 019753 248 SHEHPTG-VIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSRE-ANPLDSQVSLSLWIITT 325 (336)
Q Consensus 248 t~~~~~G-~i~~~~G~~~aG~~~~~I~v~G~~aHas~P~~G~NAI~~a~~~i~~L~~l~~~~-~~~~~~~tl~vg~I~gG 325 (336)
+.....+ .+.. +. .|..+++++++|+++|++.|+.|+||+..+++++..|++..... .+.+.+.+++++.|+||
T Consensus 161 ~~~~~~~~~i~~--~~--~G~~~~~v~v~G~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~t~~i~~i~~g 236 (370)
T TIGR01246 161 SSVKKLGDVIKN--GR--RGSITGNLTIKGIQGHVAYPHLANNPIHKAAPALAELTAIKWDEGNEFFPPTSLQITNIHAG 236 (370)
T ss_pred CCcccCCceEEE--ee--eEEEEEEEEEEccCcccCCcccCCCHHHHHHHHHHHHhhhhhccCCccCCCCceEeeeeecC
Confidence 6532222 2322 11 27889999999999999999999999999999999998763221 12245679999999999
Q ss_pred CC--CcCCCCC
Q 019753 326 HF--ALNPSFG 334 (336)
Q Consensus 326 ~~--~~~p~~~ 334 (336)
.. +.+|+.+
T Consensus 237 ~~~~nvvP~~~ 247 (370)
T TIGR01246 237 TGANNVIPGEL 247 (370)
T ss_pred CCCCcccCCce
Confidence 63 3588764
No 17
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=1.5e-33 Score=274.87 Aligned_cols=231 Identities=17% Similarity=0.181 Sum_probs=185.6
Q ss_pred HHHHHHHHhhcCCCCCccHHHHHHHHHHHHHhCCCeEEEe--cCCceEEEEecCCCCCeEEEEeccCcccCCC---ccCC
Q 019753 99 WLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYP--LAKTGIRAWVGTGGPPFVALRADMDALPIQE---AVEW 173 (336)
Q Consensus 99 ~li~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v~~~--~~~~nvia~i~g~~~p~I~l~~H~DtVP~~~---~~~~ 173 (336)
++++++++|+++||+|++|.+++++|.++|+++|+++++. .+.+|+++++++ ++|+|+|+||+||||.++ |+.+
T Consensus 3 ~~~~~l~~Lv~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~n~~~~~g~-~~~~i~l~~H~D~Vp~g~~~~w~~~ 81 (375)
T PRK13009 3 DVLELAQDLIRRPSVTPDDAGCQDLLAERLEALGFTCERMDFGDVKNLWARRGT-EGPHLCFAGHTDVVPPGDLEAWTSP 81 (375)
T ss_pred hHHHHHHHHhCCCCCCCchhhHHHHHHHHHHHcCCeEEEeccCCCcEEEEEecC-CCCEEEEEeecccCCCCCcccCCCC
Confidence 5789999999999999999999999999999999998763 345799999844 479999999999999864 5667
Q ss_pred ccccc-cCCeeeecCC-c--HHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc--chHHHHHHcCC--CCCCcEEEEE
Q 019753 174 EYKSK-VAGKMHACGH-D--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG--NGAKRMMADGA--LEDVEAIFAV 245 (336)
Q Consensus 174 pf~~~-~~G~~~g~G~-d--g~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g--~Ga~~li~~g~--~~~~d~~i~~ 245 (336)
||.++ .+|++||||+ | +++++++.|++.+++.+..++++|+|+|++|||.+ .|++.+++... ...+|++++.
T Consensus 82 Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~~~~~~~EE~~~~~G~~~~~~~~~~~~~~~d~~i~~ 161 (375)
T PRK13009 82 PFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFVAAHPDHKGSIAFLITSDEEGPAINGTVKVLEWLKARGEKIDYCIVG 161 (375)
T ss_pred CCCcEEECCEEEecCCccChHHHHHHHHHHHHHHHhcCCCCceEEEEEEeecccccccCHHHHHHHHHHcCcCCCEEEEc
Confidence 99875 5899999997 4 88999999999998877678899999999999986 48988875311 1247999999
Q ss_pred EeCCCCCce-eEEeccCCccceeEEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhhc-cCCCCCceEEEEEEE
Q 019753 246 HVSHEHPTG-VIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSRE-ANPLDSQVSLSLWII 323 (336)
Q Consensus 246 ept~~~~~G-~i~~~~G~~~aG~~~~~I~v~G~~aHas~P~~G~NAI~~a~~~i~~L~~l~~~~-~~~~~~~tl~vg~I~ 323 (336)
||+.....+ .+.. |. .|..+++|+++|+++|++.|+.|+||+..+++++.+|+.+..+. ...+.+.+++++.|+
T Consensus 162 ep~~~~~~~~~i~~--g~--~g~~~~~i~v~G~~~Ha~~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~i~ 237 (375)
T PRK13009 162 EPTSTERLGDVIKN--GR--RGSLTGKLTVKGVQGHVAYPHLADNPIHLAAPALAELAATEWDEGNEFFPPTSLQITNID 237 (375)
T ss_pred CCCcccCCCCeEEE--ec--ceEEEEEEEEEecCcccCCCCcccCHHHHHHHHHHHHHhhhccCCCccCCCceEEEEEEe
Confidence 987532222 2222 21 27889999999999999999999999999999999998763221 123456799999999
Q ss_pred ecCC--CcCCCCC
Q 019753 324 TTHF--ALNPSFG 334 (336)
Q Consensus 324 gG~~--~~~p~~~ 334 (336)
||.. +++|+.+
T Consensus 238 ~G~~~~nvip~~~ 250 (375)
T PRK13009 238 AGTGATNVIPGEL 250 (375)
T ss_pred cCCCCCcccCCcE
Confidence 9863 3478753
No 18
>PRK05111 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=1.4e-33 Score=275.98 Aligned_cols=226 Identities=15% Similarity=0.175 Sum_probs=184.2
Q ss_pred HHHHHHHHHHhhcCCCCCccH-------HHHHHHHHHHHHhCCCeEEEec-----CCceEEEEecCCCCCeEEEEeccCc
Q 019753 97 VDWLKSVRRTIHQNPELAFQE-------FETSRLLRAELDRMEIGYKYPL-----AKTGIRAWVGTGGPPFVALRADMDA 164 (336)
Q Consensus 97 ~~~li~l~~~Lv~iPs~sg~E-------~~~~~~l~~~L~~~G~~v~~~~-----~~~nvia~i~g~~~p~I~l~~H~Dt 164 (336)
.+++++++++|++|||+|++| .++++||.++|+++|++++... ++.|++++++++ .++|+|+|||||
T Consensus 4 ~~~~i~~l~~lv~i~s~s~~e~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~nvia~~g~~-~~~il~~~H~Dv 82 (383)
T PRK05111 4 LPSFIEMYRALIATPSISATDPALDQSNRAVIDLLAGWFEDLGFNVEIQPVPGTRGKFNLLASLGSG-EGGLLLAGHTDT 82 (383)
T ss_pred chHHHHHHHHHhCcCCcCCCCcccccchHHHHHHHHHHHHHCCCeEEEEecCCCCCCceEEEEeCCC-CCeEEEEeeece
Confidence 357999999999999999876 5799999999999999987532 467999999543 468999999999
Q ss_pred ccCC--CccCCccccc-cCCeeeecCC---cHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-chHHHHHHcCCCC
Q 019753 165 LPIQ--EAVEWEYKSK-VAGKMHACGH---DAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-NGAKRMMADGALE 237 (336)
Q Consensus 165 VP~~--~~~~~pf~~~-~~G~~~g~G~---dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g-~Ga~~li~~g~~~ 237 (336)
||.. .|+.+||+.. .+|++||||. ||+++++|+|++.|++. .++++|.|+|++|||.+ .|++++++++.++
T Consensus 83 vp~~~~~W~~~Pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~i~~~~~~~EE~g~~G~~~~~~~~~~~ 160 (383)
T PRK05111 83 VPFDEGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILEALRDIDLT--KLKKPLYILATADEETSMAGARAFAEATAIR 160 (383)
T ss_pred ecCCCCcCcCCCCccEEECCEEEecccccccHHHHHHHHHHHHHhhc--CCCCCeEEEEEeccccCcccHHHHHhcCCCC
Confidence 9975 4788999964 6899999984 69999999999999864 46789999999999987 5999999887654
Q ss_pred CCcEEEEEEeCCCCCceeEEeccCCccceeEEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhh----ccCC--
Q 019753 238 DVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSR----EANP-- 311 (336)
Q Consensus 238 ~~d~~i~~ept~~~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~P~~G~NAI~~a~~~i~~L~~l~~~----~~~~-- 311 (336)
.|++|++||+...+ +..+ .|..+++|+++|+++|++.|+.|.|||..+++++.+|+++... ...+
T Consensus 161 -~d~~i~~ep~~~~~---~~~~-----~G~~~~~i~v~G~~~H~~~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~ 231 (383)
T PRK05111 161 -PDCAIIGEPTSLKP---VRAH-----KGHMSEAIRITGQSGHSSDPALGVNAIELMHDVIGELLQLRDELQERYHNPAF 231 (383)
T ss_pred -CCEEEEcCCCCCce---eecc-----cceEEEEEEEEeechhccCCccCcCHHHHHHHHHHHHHHHHHHHhccCCCccC
Confidence 58999999875211 1122 2788999999999999999999999999999999999876421 1112
Q ss_pred -CCCceEEEEEEEecCCC-cCCCCC
Q 019753 312 -LDSQVSLSLWIITTHFA-LNPSFG 334 (336)
Q Consensus 312 -~~~~tl~vg~I~gG~~~-~~p~~~ 334 (336)
...+++|++.|+||... ++|+.+
T Consensus 232 ~~~~~t~~i~~i~gg~~~NvVP~~~ 256 (383)
T PRK05111 232 TVPYPTLNLGHIHGGDAPNRICGCC 256 (383)
T ss_pred CCCCCceeEeeeecCCcCcccCCce
Confidence 13579999999999875 488753
No 19
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=100.00 E-value=1.1e-33 Score=274.40 Aligned_cols=222 Identities=17% Similarity=0.187 Sum_probs=181.1
Q ss_pred HHHHHhhcCCCCCccH-HHHHHHHHHHHHhCCCeEEEec-----CCceEEEEecCCCCCeEEEEeccCcccCC--CccCC
Q 019753 102 SVRRTIHQNPELAFQE-FETSRLLRAELDRMEIGYKYPL-----AKTGIRAWVGTGGPPFVALRADMDALPIQ--EAVEW 173 (336)
Q Consensus 102 ~l~~~Lv~iPs~sg~E-~~~~~~l~~~L~~~G~~v~~~~-----~~~nvia~i~g~~~p~I~l~~H~DtVP~~--~~~~~ 173 (336)
+++++|++|||++++| .++++||.++|+++|++++... .++|+++++++.+.|+|+|+|||||||.+ .|+.+
T Consensus 1 ~~l~~lv~i~S~s~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~nl~~~~~~~~~~~i~l~~H~Dtvp~~~~~w~~~ 80 (364)
T TIGR01892 1 EILTKLVAFDSTSFRPNVDLIDWAQAYLEALGFSVEVQPFPDGAEKSNLVAVIGPSGAGGLALSGHTDVVPYDDAAWTRD 80 (364)
T ss_pred ChHHHhhCcCCcCCccHHHHHHHHHHHHHHcCCeEEEEeCCCCCccccEEEEecCCCCCeEEEEcccccccCCCCcCCCC
Confidence 3688999999999865 7999999999999999987642 36799999976446899999999999986 46778
Q ss_pred ccccc-cCCeeeecC---CcHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-chHHHHHHcCCCCCCcEEEEEEeC
Q 019753 174 EYKSK-VAGKMHACG---HDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-NGAKRMMADGALEDVEAIFAVHVS 248 (336)
Q Consensus 174 pf~~~-~~G~~~g~G---~dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g-~Ga~~li~~g~~~~~d~~i~~ept 248 (336)
||++. .+|++|||| +|++++++|+|+++|++. .++++|.|+|++|||.| .|++++++++.+ ++|+++++||+
T Consensus 81 Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~v~~~~~~~EE~g~~G~~~~~~~~~~-~~d~~i~~ep~ 157 (364)
T TIGR01892 81 PFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAAE--QLKKPLHLALTADEEVGCTGAPKMIEAGAG-RPRHAIIGEPT 157 (364)
T ss_pred CCcceeeCCEEEecCccccchHHHHHHHHHHHHHhc--CcCCCEEEEEEeccccCCcCHHHHHHhcCC-CCCEEEECCCC
Confidence 99864 678999999 679999999999999874 46889999999999987 699999998753 57999998886
Q ss_pred CCCCceeEEeccCCccceeEEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhhcc-----CCC--CCceEEEEE
Q 019753 249 HEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREA-----NPL--DSQVSLSLW 321 (336)
Q Consensus 249 ~~~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~P~~G~NAI~~a~~~i~~L~~l~~~~~-----~~~--~~~tl~vg~ 321 (336)
.. .+.. + ..|..+++|+++|+++|++.|+.|+|||..+++++.+|+++..... .++ ..+++|++.
T Consensus 158 ~~----~~~~--~--~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~ 229 (364)
T TIGR01892 158 RL----IPVR--A--HKGYASAEVTVRGRSGHSSYPDSGVNAIFRAGRFLQRLVHLADTLLREDLDEGFTPPYTTLNIGV 229 (364)
T ss_pred Cc----eeEE--e--eceEEEEEEEEEcccccccCCccCcCHHHHHHHHHHHHHHHHHHhccCCCCccCCCCCceEEEee
Confidence 42 1211 1 1278899999999999999999999999999999999987643211 111 246999999
Q ss_pred EEecCCCc-CCCCC
Q 019753 322 IITTHFAL-NPSFG 334 (336)
Q Consensus 322 I~gG~~~~-~p~~~ 334 (336)
|+||+..+ +|+.+
T Consensus 230 i~gg~~~nviP~~~ 243 (364)
T TIGR01892 230 IQGGKAVNIIPGAC 243 (364)
T ss_pred eecCCCCcccCCeE
Confidence 99997754 88753
No 20
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=100.00 E-value=9.9e-34 Score=276.74 Aligned_cols=226 Identities=15% Similarity=0.150 Sum_probs=184.2
Q ss_pred HHHHHhhcCCC---CCccHHHHHHHHHHHHHhCCCeEEEec---CCce----EEEEecCC-CCCeEEEEeccCcccCC--
Q 019753 102 SVRRTIHQNPE---LAFQEFETSRLLRAELDRMEIGYKYPL---AKTG----IRAWVGTG-GPPFVALRADMDALPIQ-- 168 (336)
Q Consensus 102 ~l~~~Lv~iPs---~sg~E~~~~~~l~~~L~~~G~~v~~~~---~~~n----via~i~g~-~~p~I~l~~H~DtVP~~-- 168 (336)
+++++|+++|| ++++|.++++||.++|+++|+++++.. ...| +++.+.+. ++|+|+|.|||||||.+
T Consensus 2 ~~l~~lv~i~s~~~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ill~~H~DtVp~~~~ 81 (375)
T TIGR01910 2 ELLKDLISIPSVNPPGGNEETIANYIKDLLREFGFSTDVIEITDDRLKVLGKVVVKEPGNGNEKSLIFNGHYDVVPAGDL 81 (375)
T ss_pred hhHHhhhcCCCCCCCCcCHHHHHHHHHHHHHHCCCceEEEecCchhcccccceEEeccCCCCCCEEEEecccccccCCCh
Confidence 67899999999 889999999999999999999987632 2223 55555543 46899999999999986
Q ss_pred -CccCCccccc-cCCeeeecCC---cHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-chHHHHHHcCCCCCCcEE
Q 019753 169 -EAVEWEYKSK-VAGKMHACGH---DAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-NGAKRMMADGALEDVEAI 242 (336)
Q Consensus 169 -~~~~~pf~~~-~~G~~~g~G~---dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g-~Ga~~li~~g~~~~~d~~ 242 (336)
+|+.+||++. .+|++||||+ +++++++|+|++.|++.+..++++|.|+|++|||.| .|++.+++++.++++|++
T Consensus 82 ~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~G~~~~~~~~~~~~~d~~ 161 (375)
T TIGR01910 82 ELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAIREAGIKPNGNIILQSVVDEESGEAGTLYLLQRGYFKDADGV 161 (375)
T ss_pred hhCcCCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEEEcCcccCchhHHHHHHcCCCCCCCEE
Confidence 4677799874 6789999996 489999999999999877778999999999999987 599999998877668999
Q ss_pred EEEEeCCCCCceeEEeccCCccceeEEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhhccC------CCCCce
Q 019753 243 FAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREAN------PLDSQV 316 (336)
Q Consensus 243 i~~ept~~~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~P~~G~NAI~~a~~~i~~L~~l~~~~~~------~~~~~t 316 (336)
|+.+|+.. +.+.... .|..+++|+++|+++|++.|+.|+|||..++++|.+|+++...... ..+.++
T Consensus 162 i~~~~~~~---~~v~~~~----~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~t 234 (375)
T TIGR01910 162 LIPEPSGG---DNIVIGH----KGSIWFKLRVKGKQAHASFPQFGVNAIMKLAKLITELNELEEHIYARNSYGFIPGPIT 234 (375)
T ss_pred EECCCCCC---CceEEEe----cceEEEEEEEeeeecccCCCCcchhHHHHHHHHHHHHHHHHHHhhhcccccccCCCcc
Confidence 99887631 2333221 2788999999999999999999999999999999999987532111 124579
Q ss_pred EEEEEEEecCCCc-CCCCC
Q 019753 317 SLSLWIITTHFAL-NPSFG 334 (336)
Q Consensus 317 l~vg~I~gG~~~~-~p~~~ 334 (336)
+|++.|+||+..+ +|+.+
T Consensus 235 ~~i~~i~gG~~~nviP~~~ 253 (375)
T TIGR01910 235 FNPGVIKGGDWVNSVPDYC 253 (375)
T ss_pred ccceeEECCCCcCcCCCEE
Confidence 9999999998764 88764
No 21
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=100.00 E-value=1.1e-33 Score=277.05 Aligned_cols=222 Identities=18% Similarity=0.132 Sum_probs=174.8
Q ss_pred HHHHhhcCCCCCccHHHHHHHHHHHHHhCCC---eEEEecCCceEEEEecCCCCCeEEEEeccCcccCCC-----ccCCc
Q 019753 103 VRRTIHQNPELAFQEFETSRLLRAELDRMEI---GYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQE-----AVEWE 174 (336)
Q Consensus 103 l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~---~v~~~~~~~nvia~i~g~~~p~I~l~~H~DtVP~~~-----~~~~p 174 (336)
++++|++|||++++|.++++||.++|+++|+ ++... +.||+++++++++|+|+|+|||||||+++ |+..|
T Consensus 1 ll~~Lv~ipS~s~~e~~~~~~i~~~l~~~g~~~~~~~~~--~~nvva~~~~~~~~~l~l~gH~DtVp~~~~~~~~W~~~p 78 (373)
T TIGR01900 1 LLQQIMDIFSPSDHEGPIADEIEAALNNLELEGLEVFRF--GDNVLARTDFGKASRVILAGHIDTVPIADNFPPKWLEPG 78 (373)
T ss_pred ChHHHhCCCCCCchHHHHHHHHHHHHhhccccCceEEEE--CCEEEEecCCCCCCeEEEeCccccccCCCCChhhhccCc
Confidence 4688999999999999999999999999965 34433 45999998654468999999999999853 54444
Q ss_pred c--------cc-ccCCeeeecCC-c--HHHHHHHHHHHHHHH--cCCCCCceEEEEEecCCCCc---chHHHHHHcCC-C
Q 019753 175 Y--------KS-KVAGKMHACGH-D--AHVAMLIGAAKILKS--REHLLKGTVILIFQPAEEAG---NGAKRMMADGA-L 236 (336)
Q Consensus 175 f--------~~-~~~G~~~g~G~-d--g~~A~~L~Aa~~L~~--~~~~l~g~I~~ift~dEE~g---~Ga~~li~~g~-~ 236 (336)
| .. ..+|++||||+ | +++|++|+|++.|++ .+..++++|.|+|++|||.+ .|++.++++.. +
T Consensus 79 ~~~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a~~~l~~~~~~~~~~~~i~~~~~~dEE~~~~~~G~~~~~~~~~~~ 158 (373)
T TIGR01900 79 DSLIREEIAHAHPEDGILWGCGATDMKAGDAVMLHLAATLDGRAPETELKHDLTLIAYDCEEVAAEKNGLGHIRDAHPDW 158 (373)
T ss_pred ccccccccccccccCCEEEecCchhhhHHHHHHHHHHHHHhhhccccCCCCCEEEEEEecccccCCCCCHHHHHHhCccc
Confidence 3 33 35799999997 4 889999999999854 24467899999999999985 39999987632 2
Q ss_pred CCCcEEEEEEeCCCCCceeEEeccCCccceeEEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhhcc--CC-CC
Q 019753 237 EDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREA--NP-LD 313 (336)
Q Consensus 237 ~~~d~~i~~ept~~~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~P~~G~NAI~~a~~~i~~L~~l~~~~~--~~-~~ 313 (336)
.++|++|++||+.. .+.. | ..|..|++|+++|+++|++.|+.|.|||..+++++.+|+++..... +. ..
T Consensus 159 ~~~d~~iv~Ept~~----~i~~--g--~~G~~~~~i~v~G~~~H~s~p~~g~NAi~~~~~~i~~l~~l~~~~~~~~~~~~ 230 (373)
T TIGR01900 159 LAADFAIIGEPTGG----GIEA--G--CNGNIRFDVTAHGVAAHSARAWLGDNAIHKAADIINKLAAYEAAEVNIDGLDY 230 (373)
T ss_pred ccCCEEEEECCCCC----cccc--c--ceeeEEEEEEEEeeccccCCCCCCCCHHHHHHHHHHHHHHhhcccccccCCcc
Confidence 35799999998753 2322 2 2378999999999999999999999999999999999988643211 11 12
Q ss_pred CceEEEEEEEecCCCc-CCCCC
Q 019753 314 SQVSLSLWIITTHFAL-NPSFG 334 (336)
Q Consensus 314 ~~tl~vg~I~gG~~~~-~p~~~ 334 (336)
..++|++.|+||.+.+ +|+.+
T Consensus 231 ~~t~~v~~I~GG~~~nvVP~~a 252 (373)
T TIGR01900 231 REGLNATFCEGGKANNVIPDEA 252 (373)
T ss_pred cceEEEEEEeCCCCCcccCCeE
Confidence 4689999999998764 88754
No 22
>PRK08596 acetylornithine deacetylase; Validated
Probab=100.00 E-value=9.6e-33 Score=274.35 Aligned_cols=235 Identities=15% Similarity=0.076 Sum_probs=190.1
Q ss_pred HHHHHhcCcchHHHHHHHHHHhhcCCCCC---ccHHHHHHHHHHHHHhCCCeEEEe---cCCceEEEEecCC-C--CCeE
Q 019753 86 EVMELARRPETVDWLKSVRRTIHQNPELA---FQEFETSRLLRAELDRMEIGYKYP---LAKTGIRAWVGTG-G--PPFV 156 (336)
Q Consensus 86 ~i~~~~~~~~~~~~li~l~~~Lv~iPs~s---g~E~~~~~~l~~~L~~~G~~v~~~---~~~~nvia~i~g~-~--~p~I 156 (336)
++++.++ ..++++++++++|++|||++ ++|.++++||.++|+++|+++++. ++++|+++++++. + +|+|
T Consensus 3 ~~~~~i~--~~~~~~~~~l~~Lv~i~S~s~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~nvia~~~g~~~~~~~~l 80 (421)
T PRK08596 3 QLLEQIE--LRKDELLELLKTLVRFETPAPPARNTNEAQEFIAEFLRKLGFSVDKWDVYPNDPNVVGVKKGTESDAYKSL 80 (421)
T ss_pred HHHHHHH--hhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHCCCeEEEEEccCCCceEEEEecCCCCCCCcEE
Confidence 4677777 77889999999999999998 478899999999999999998764 3568999999653 2 3689
Q ss_pred EEEeccCcccCCC---ccCCccccc-cCCeeeecCC---cHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-chHH
Q 019753 157 ALRADMDALPIQE---AVEWEYKSK-VAGKMHACGH---DAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-NGAK 228 (336)
Q Consensus 157 ~l~~H~DtVP~~~---~~~~pf~~~-~~G~~~g~G~---dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g-~Ga~ 228 (336)
+|+|||||||+++ |+..||.+. .+|++||||+ +++++++|.|+++|++.+..++++|.|+|++|||.| .|++
T Consensus 81 ll~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~G~~ 160 (421)
T PRK08596 81 IINGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHEAGIELPGDLIFQSVIGEEVGEAGTL 160 (421)
T ss_pred EEeccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHHcCCCCCCcEEEEEEeccccCCcCHH
Confidence 9999999999864 677799875 5899999997 499999999999999887778899999999999987 5999
Q ss_pred HHHHcCCCCCCcEEEEEEeCCCCCceeEEeccCCccceeEEEEEEEEee----------cCCCCCCCCCCCHHHHHHHHH
Q 019753 229 RMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGK----------KGGAANPHRSVDPVLAASAAV 298 (336)
Q Consensus 229 ~li~~g~~~~~d~~i~~ept~~~~~G~i~~~~G~~~aG~~~~~I~v~G~----------~aHas~P~~G~NAI~~a~~~i 298 (336)
++++++. ..|++|+.||+... +...+ |...++++++|. .+|++.|+.|.|||..++++|
T Consensus 161 ~~~~~~~--~~d~~i~~ep~~~~----~~~~~-----G~~~~~~~v~g~~~~~~~~~~~~~H~~~p~~G~nai~~~~~~i 229 (421)
T PRK08596 161 QCCERGY--DADFAVVVDTSDLH----MQGQG-----GVITGWITVKSPQTFHDGTRRQMIHAGGGLFGASAIEKMMKII 229 (421)
T ss_pred HHHhcCC--CCCEEEECCCCCCc----ccccc-----ceeeEEEEEEeecccccccccccccccCCccCcCHHHHHHHHH
Confidence 9998864 46999999986521 11111 555566777765 479999999999999999999
Q ss_pred HHHHhhhhh----c-cC--CCCCceEEEEEEEecCCCc-CCCC
Q 019753 299 ISLQGLVSR----E-AN--PLDSQVSLSLWIITTHFAL-NPSF 333 (336)
Q Consensus 299 ~~L~~l~~~----~-~~--~~~~~tl~vg~I~gG~~~~-~p~~ 333 (336)
.+|+.+... . .. +.+..++|++.|+||...+ +|+.
T Consensus 230 ~~l~~~~~~~~~~~~~~~~~~~~~t~~v~~i~gG~~~nvvP~~ 272 (421)
T PRK08596 230 QSLQELERHWAVMKSYPGFPPGTNTINPAVIEGGRHAAFIADE 272 (421)
T ss_pred HHHHHHHHHHhhcccCccCCCCCcceeeeeeeCCCCCCccCce
Confidence 999876321 1 11 1234799999999998754 7864
No 23
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=8.3e-33 Score=267.48 Aligned_cols=222 Identities=17% Similarity=0.212 Sum_probs=178.4
Q ss_pred hHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHhC-CCeEEEecCCceEEEEecCCCCCeEEEEeccCcccCCCccCCc
Q 019753 96 TVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRM-EIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWE 174 (336)
Q Consensus 96 ~~~~li~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~-G~~v~~~~~~~nvia~i~g~~~p~I~l~~H~DtVP~~~~~~~p 174 (336)
+.+++++++++|+++||+|++|.++++||.++|+++ |+++... ++|++++++++.+++|+|+|||||||+++ ..|
T Consensus 5 ~~~~~~~~l~~li~ips~s~~e~~~~~~l~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~i~l~~H~Dtvp~~~--~~~ 80 (352)
T PRK13007 5 LAADLAELTAALVDIPSVSGDEKALADAVEAALRALPHLEVIRH--GNSVVARTDLGRPSRVVLAGHLDTVPVAD--NLP 80 (352)
T ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhCcCceEEec--CCeEEEEccCCCCCeEEEEccccccCCCC--CCC
Confidence 567899999999999999999999999999999996 8887653 46899999655456899999999999864 233
Q ss_pred cccccCCeeeecCC-c--HHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc---chHHHHHHc-CCCCCCcEEEEEEe
Q 019753 175 YKSKVAGKMHACGH-D--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG---NGAKRMMAD-GALEDVEAIFAVHV 247 (336)
Q Consensus 175 f~~~~~G~~~g~G~-d--g~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g---~Ga~~li~~-g~~~~~d~~i~~ep 247 (336)
+. ..+|++||||+ | +++|++|.|++.|. .++++|.|+|++|||.+ .|++.+++. +.+.++|++|++||
T Consensus 81 ~~-~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~----~~~~~i~~~~~~~EE~~~~~~G~~~~~~~~~~~~~~d~~i~~ep 155 (352)
T PRK13007 81 SR-REGDRLYGCGASDMKSGLAVMLHLAATLA----EPAHDLTLVFYDCEEVEAEANGLGRLAREHPEWLAGDFAILLEP 155 (352)
T ss_pred cc-eeCCEEEccCcccccHHHHHHHHHHHHhh----ccCCCeEEEEEecccccCCcccHHHHHHhcccccCCCEEEEecC
Confidence 32 35799999997 4 89999999999983 36789999999999986 388888865 22345799999998
Q ss_pred CCCCCceeEEeccCCccceeEEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhhccCC---CCCceEEEEEEEe
Q 019753 248 SHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREANP---LDSQVSLSLWIIT 324 (336)
Q Consensus 248 t~~~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~P~~G~NAI~~a~~~i~~L~~l~~~~~~~---~~~~tl~vg~I~g 324 (336)
+.. .+.. + ..|..+++|+++|+++|+|.|+.|+||+..+++++.+|+++..+.... ....++|++.|+|
T Consensus 156 ~~~----~i~~--~--~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~i~g 227 (352)
T PRK13007 156 TDG----VIEA--G--CQGTLRVTVTFHGRRAHSARSWLGENAIHKAAPVLARLAAYEPREVVVDGLTYREGLNAVRISG 227 (352)
T ss_pred CCC----ceEe--e--ccceEEEEEEEEecccccCCCccCcCHHHHHHHHHHHHHHhcccccccCCCCccceeEeEeEec
Confidence 642 3332 1 127899999999999999999999999999999999998865332111 1135899999999
Q ss_pred cCCC-cCCCCC
Q 019753 325 THFA-LNPSFG 334 (336)
Q Consensus 325 G~~~-~~p~~~ 334 (336)
|... ++|+.+
T Consensus 228 G~~~nviP~~a 238 (352)
T PRK13007 228 GVAGNVIPDEC 238 (352)
T ss_pred CCcCccCCCeE
Confidence 9876 488764
No 24
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=100.00 E-value=7.5e-33 Score=271.71 Aligned_cols=234 Identities=18% Similarity=0.169 Sum_probs=183.7
Q ss_pred chHHHHHHHHHHhhcCCCCCc-----cHHHHHHHHHHHHHhCCCe-EEEec-------C--CceEEEEecCC-CCCeEEE
Q 019753 95 ETVDWLKSVRRTIHQNPELAF-----QEFETSRLLRAELDRMEIG-YKYPL-------A--KTGIRAWVGTG-GPPFVAL 158 (336)
Q Consensus 95 ~~~~~li~l~~~Lv~iPs~sg-----~E~~~~~~l~~~L~~~G~~-v~~~~-------~--~~nvia~i~g~-~~p~I~l 158 (336)
+.++++++++++|++|||+|+ +|.+++++|.++|+++|++ +++.. + ++|+++++++. ++++|+|
T Consensus 2 ~~~~~~~~~l~~lv~i~s~s~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~nl~~~~~g~~~~~~lll 81 (400)
T PRK13983 2 ELRDEMIELLSELIAIPAVNPDFGGEGEKEKAEYLESLLKEYGFDEVERYDAPDPRVIEGVRPNIVAKIPGGDGKRTLWI 81 (400)
T ss_pred chHHHHHHHHHHHhCcCCCCCCCCCccHHHHHHHHHHHHHHcCCceEEEEecCCcccccCCCccEEEEecCCCCCCeEEE
Confidence 567899999999999999984 5899999999999999998 76531 1 58999999765 4579999
Q ss_pred EeccCcccCCC---ccCCccccc-cCCeeeecCC---cHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCcc--hHHH
Q 019753 159 RADMDALPIQE---AVEWEYKSK-VAGKMHACGH---DAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN--GAKR 229 (336)
Q Consensus 159 ~~H~DtVP~~~---~~~~pf~~~-~~G~~~g~G~---dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g~--Ga~~ 229 (336)
+|||||||+++ |+.+||.+. .+|++||||. +++++++|.|+++|++.+..++++|.|+|++|||.|+ |+++
T Consensus 82 ~~H~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~g~~~ 161 (400)
T PRK13983 82 ISHMDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMDLGIRPKYNLGLAFVSDEETGSKYGIQY 161 (400)
T ss_pred EeeccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHHhCCCCCCcEEEEEEeccccCCcccHHH
Confidence 99999999864 677899876 5789999994 3778888889999998877889999999999999773 8999
Q ss_pred HHHc--CCCCCCcEEEEEEeCCCCCcee-EEeccCCccceeEEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHh-hh
Q 019753 230 MMAD--GALEDVEAIFAVHVSHEHPTGV-IGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQG-LV 305 (336)
Q Consensus 230 li~~--g~~~~~d~~i~~ept~~~~~G~-i~~~~G~~~aG~~~~~I~v~G~~aHas~P~~G~NAI~~a~~~i~~L~~-l~ 305 (336)
+++. +.+.+.|++++.+. ..+.+. +.. + ..|..+++|+++|+++|+|.|+.|+||+..+++++.+|++ +.
T Consensus 162 ~~~~~~~~~~~~d~~i~~~~--~~~~~~~i~~--~--~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~ 235 (400)
T PRK13983 162 LLKKHPELFKKDDLILVPDA--GNPDGSFIEI--A--EKSILWLKFTVKGKQCHASTPENGINAHRAAADFALELDEALH 235 (400)
T ss_pred HHhhcccccCCCCEEEEecC--CCCCCceeEE--e--ecceEEEEEEEEeEccccCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9987 66666788887442 122233 222 1 1378899999999999999999999999999999999987 42
Q ss_pred hhc--cCC-C--CCceEEEEEEEecC-C-CcCCCCC
Q 019753 306 SRE--ANP-L--DSQVSLSLWIITTH-F-ALNPSFG 334 (336)
Q Consensus 306 ~~~--~~~-~--~~~tl~vg~I~gG~-~-~~~p~~~ 334 (336)
... .++ . ...+++++.+.+|. . +++|+.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~nvvp~~~ 271 (400)
T PRK13983 236 EKFNAKDPLFDPPYSTFEPTKKEANVDNINTIPGRD 271 (400)
T ss_pred hhhcccccccCCCCcccccceeecCCcCCcccCCee
Confidence 211 111 1 12478889998874 3 3588653
No 25
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=100.00 E-value=1e-32 Score=271.96 Aligned_cols=233 Identities=15% Similarity=0.092 Sum_probs=183.3
Q ss_pred HHHHHHHHHHhhcCCCCCcc--HHHHHHHHHHHHHhCCCeEEEe---cCCceEEEEecCC-C-CCeEEEEeccCcccCC-
Q 019753 97 VDWLKSVRRTIHQNPELAFQ--EFETSRLLRAELDRMEIGYKYP---LAKTGIRAWVGTG-G-PPFVALRADMDALPIQ- 168 (336)
Q Consensus 97 ~~~li~l~~~Lv~iPs~sg~--E~~~~~~l~~~L~~~G~~v~~~---~~~~nvia~i~g~-~-~p~I~l~~H~DtVP~~- 168 (336)
.+++++++++|++|||.+++ |.++++||.++|+++|++++.. .+++|++++++++ + .|+|+|+|||||||++
T Consensus 8 ~~~~~~~l~~lv~ipS~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~g~~~l~~~~~g~~~~~~~i~l~~H~DvVp~~~ 87 (400)
T TIGR01880 8 EDIAVTRFREYLRINTVQPNPDYAACVDFLIKQADELGLARKTIEFVPGKPVVVLTWPGSNPELPSILLNSHTDVVPVFR 87 (400)
T ss_pred hHHHHHHHHHHhccCccCCCccHHHHHHHHHHHHHhCCCceeEEEecCCceeEEEEEecCCCCCCeEEEEcccccCCCCc
Confidence 57889999999999999764 7899999999999999987642 3578999999654 3 3899999999999985
Q ss_pred -CccCCccccc--cCCeeeecCC-c--HHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCcc--hHHHHHHcCCCCCCc
Q 019753 169 -EAVEWEYKSK--VAGKMHACGH-D--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN--GAKRMMADGALEDVE 240 (336)
Q Consensus 169 -~~~~~pf~~~--~~G~~~g~G~-d--g~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g~--Ga~~li~~g~~~~~d 240 (336)
.|+.+||.+. .+|++||||+ | ++++++|.|++.|++.+..++++|.|+|++|||.|+ |++++++++.+.+.|
T Consensus 88 ~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~~~~~~~~~v~l~~~~dEE~g~~~G~~~~~~~~~~~~~~ 167 (400)
T TIGR01880 88 EHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKASGFKFKRTIHISFVPDEEIGGHDGMEKFAKTDEFKALN 167 (400)
T ss_pred ccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHHcCCCCCceEEEEEeCCcccCcHhHHHHHHHhhhccCCc
Confidence 4778899975 4899999997 5 888899999999998877788999999999999873 999999887666667
Q ss_pred EEEEEEeCCCCCce--eEEeccCCccceeEEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhh------c---c
Q 019753 241 AIFAVHVSHEHPTG--VIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSR------E---A 309 (336)
Q Consensus 241 ~~i~~ept~~~~~G--~i~~~~G~~~aG~~~~~I~v~G~~aHas~P~~G~NAI~~a~~~i~~L~~l~~~------~---~ 309 (336)
++++.++....+.+ .+.. ...|..+++|+++|+++|++.|. +.||+..+++++..|+++... . .
T Consensus 168 ~~~~~d~g~~~~~~~~~i~~----~~kG~~~~~l~v~G~~~Hs~~~~-~~nai~~l~~~i~~l~~~~~~~~~~~~~~~~~ 242 (400)
T TIGR01880 168 LGFALDEGLASPDDVYRVFY----AERVPWWVVVTAPGNPGHGSKLM-ENTAMEKLEKSVESIRRFRESQFQLLQSNPDL 242 (400)
T ss_pred eEEEEcCCCcccccccceeE----EeeEEEEEEEEEecCCCCCCCCC-CCCHHHHHHHHHHHHHHhhHHHHHHHhcCccc
Confidence 77766432111112 2221 12378999999999999999864 479999999999988765311 1 1
Q ss_pred CCCCCceEEEEEEEecCCC-cCCCCC
Q 019753 310 NPLDSQVSLSLWIITTHFA-LNPSFG 334 (336)
Q Consensus 310 ~~~~~~tl~vg~I~gG~~~-~~p~~~ 334 (336)
.....+++|++.|+||... ++|+.+
T Consensus 243 ~~~~~~t~~v~~i~gG~~~nvIP~~a 268 (400)
T TIGR01880 243 AIGDVTSVNLTKLKGGVQSNVIPSEA 268 (400)
T ss_pred cccccceeecceeccCCcCCcCCCcc
Confidence 1112479999999999875 488764
No 26
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=5.1e-32 Score=265.95 Aligned_cols=228 Identities=18% Similarity=0.213 Sum_probs=184.3
Q ss_pred chHHHHHHHHHHhhcCCCCC---ccHHHHHHHHHHHHHhCCCeEEEecC-----------CceEEEEecCCCCCeEEEEe
Q 019753 95 ETVDWLKSVRRTIHQNPELA---FQEFETSRLLRAELDRMEIGYKYPLA-----------KTGIRAWVGTGGPPFVALRA 160 (336)
Q Consensus 95 ~~~~~li~l~~~Lv~iPs~s---g~E~~~~~~l~~~L~~~G~~v~~~~~-----------~~nvia~i~g~~~p~I~l~~ 160 (336)
.+.+++++++++|++|||.| .+|.++++||.++|+++|+++++... ++|+++..+++ +|+|+|+|
T Consensus 3 ~~~~~~~~~l~~lv~i~S~s~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ill~~ 81 (394)
T PRK08651 3 AMMFDIVEFLKDLIKIPTVNPPGENYEEIAEFLRDTLEELGFSTEIIEVPNEYVKKHDGPRPNLIARRGSG-NPHLHFNG 81 (394)
T ss_pred hhHHHHHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHHHcCCeEEEEecCccccccccCCcceEEEEeCCC-CceEEEEe
Confidence 56789999999999999998 67889999999999999999876421 13577776544 48999999
Q ss_pred ccCcccCCC--ccCCccccc-cCCeeeecCC---cHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-chHHHHHHc
Q 019753 161 DMDALPIQE--AVEWEYKSK-VAGKMHACGH---DAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-NGAKRMMAD 233 (336)
Q Consensus 161 H~DtVP~~~--~~~~pf~~~-~~G~~~g~G~---dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g-~Ga~~li~~ 233 (336)
||||||.++ |+.+||++. .+|++||||+ +++++++|+|++.|++.+ +++|.|+|++|||.| .|+++++++
T Consensus 82 HlDtvp~~~~~~~~~Pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~---~~~v~~~~~~~EE~g~~G~~~~~~~ 158 (394)
T PRK08651 82 HYDVVPPGEGWSVNVPFEPKVKDGKVYGRGASDMKGGIAALLAAFERLDPAG---DGNIELAIVPDEETGGTGTGYLVEE 158 (394)
T ss_pred eeeeecCCCCccccCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHhcC---CCCEEEEEecCccccchhHHHHHhc
Confidence 999999864 377899986 5899999996 589999999999998754 789999999999988 599999998
Q ss_pred CCCCCCcEEEEEEeCCCCCceeEEeccCCccceeEEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhhcc----
Q 019753 234 GALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREA---- 309 (336)
Q Consensus 234 g~~~~~d~~i~~ept~~~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~P~~G~NAI~~a~~~i~~L~~l~~~~~---- 309 (336)
+.++ +|++++.+|+.. +.+... ..|..+++|+++|+++|++.|+.|+|||..+++++.+|++...+..
T Consensus 159 ~~~~-~d~~i~~~~~~~---~~i~~~----~~G~~~~~i~v~G~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~ 230 (394)
T PRK08651 159 GKVT-PDYVIVGEPSGL---DNICIG----HRGLVWGVVKVYGKQAHASTPWLGINAFEAAAKIAERLKSSLSTIKSKYE 230 (394)
T ss_pred cCCC-CCEEEEecCCCC---CceEEe----cccEEEEEEEEEEeccccCCCccccCHHHHHHHHHHHHHHHHHhhhcccc
Confidence 7653 799999887642 233322 1278899999999999999999999999999999999986532111
Q ss_pred --C-CCCCceEEEEE--EEecCCCc-CCCCC
Q 019753 310 --N-PLDSQVSLSLW--IITTHFAL-NPSFG 334 (336)
Q Consensus 310 --~-~~~~~tl~vg~--I~gG~~~~-~p~~~ 334 (336)
. .....++++|. |+||...+ +|+.+
T Consensus 231 ~~~~~~~~~~~~ig~~~i~gG~~~nviP~~a 261 (394)
T PRK08651 231 YDDERGAKPTVTLGGPTVEGGTKTNIVPGYC 261 (394)
T ss_pred ccccccCCCceeecceeeeCCCCCCccCCEE
Confidence 1 12356889999 99998764 88753
No 27
>PRK09133 hypothetical protein; Provisional
Probab=100.00 E-value=7.6e-32 Score=271.56 Aligned_cols=205 Identities=17% Similarity=0.159 Sum_probs=165.8
Q ss_pred chHHHHHHHHHHhhcCCCCC--ccHHHHHHHHHHHHHhCCCeEE---Ee---cCCceEEEEecCC-CCCeEEEEeccCcc
Q 019753 95 ETVDWLKSVRRTIHQNPELA--FQEFETSRLLRAELDRMEIGYK---YP---LAKTGIRAWVGTG-GPPFVALRADMDAL 165 (336)
Q Consensus 95 ~~~~~li~l~~~Lv~iPs~s--g~E~~~~~~l~~~L~~~G~~v~---~~---~~~~nvia~i~g~-~~p~I~l~~H~DtV 165 (336)
..++++++++++|++|||++ ++|.++++||.++|+++|++++ .. ..+.||++++++. ++|.|+|+||||||
T Consensus 34 ~~~~~~~~~l~~Lv~i~S~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~nli~~~~g~~~~~~lll~~H~DtV 113 (472)
T PRK09133 34 ADQQAARDLYKELIEINTTASTGSTTPAAEAMAARLKAAGFADADIEVTGPYPRKGNLVARLRGTDPKKPILLLAHMDVV 113 (472)
T ss_pred hhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHcCCCceEEEeccCCCCceeEEEEecCCCCCCcEEEEeecccC
Confidence 45788999999999999997 7899999999999999999854 22 2467999999764 45899999999999
Q ss_pred cCC--CccCCccccc-cCCeeeecCC-c--HHHHHHHHHHHHHHHcCCCCCceEEEEEecCCC-Cc-chHHHHHHcCC-C
Q 019753 166 PIQ--EAVEWEYKSK-VAGKMHACGH-D--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEE-AG-NGAKRMMADGA-L 236 (336)
Q Consensus 166 P~~--~~~~~pf~~~-~~G~~~g~G~-d--g~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE-~g-~Ga~~li~~g~-~ 236 (336)
|.+ +|+.+||++. .+|++||||+ | ++++++|.|+++|++.+..++++|.|+|++||| .| .|++.++++.. .
T Consensus 114 p~~~~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~g~~G~~~l~~~~~~~ 193 (472)
T PRK09133 114 EAKREDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLKREGFKPKRDIILALTGDEEGTPMNGVAWLAENHRDL 193 (472)
T ss_pred CCChhcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccCccchHHHHHHHHhhc
Confidence 985 5788899976 5799999996 4 899999999999998777788999999999999 55 59999987632 1
Q ss_pred CCCcEEEEEEeCC------CCCceeEEeccCCccceeEEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhh
Q 019753 237 EDVEAIFAVHVSH------EHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGL 304 (336)
Q Consensus 237 ~~~d~~i~~ept~------~~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~P~~G~NAI~~a~~~i~~L~~l 304 (336)
-+.|++|+ |++. ..+.. ..+..| ..|..+++|+++|+++|+|.|+ +.|||..++++|.+|+++
T Consensus 194 ~~~~~~i~-e~~~~~~~~~gept~-~~i~~g--~kG~~~~~i~v~G~~~Hss~p~-~~nAi~~l~~~l~~l~~~ 262 (472)
T PRK09133 194 IDAEFALN-EGGGGTLDEDGKPVL-LTVQAG--EKTYADFRLEVTNPGGHSSRPT-KDNAIYRLAAALSRLAAY 262 (472)
T ss_pred cCeEEEEE-CCCccccCCCCCceE-EEeeee--cceeEEEEEEEecCCCCCCCCC-CCChHHHHHHHHHHHhhC
Confidence 13688888 7653 11211 111122 2378999999999999999997 599999999999999864
No 28
>PRK08737 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=2.5e-31 Score=259.93 Aligned_cols=218 Identities=14% Similarity=0.042 Sum_probs=172.7
Q ss_pred chHHHHHHHHHHhhcCCCCC----ccHHHHHHHHHHHHHhCCCeEEEec---CCceEEEEecCCCCCeEEEEeccCcccC
Q 019753 95 ETVDWLKSVRRTIHQNPELA----FQEFETSRLLRAELDRMEIGYKYPL---AKTGIRAWVGTGGPPFVALRADMDALPI 167 (336)
Q Consensus 95 ~~~~~li~l~~~Lv~iPs~s----g~E~~~~~~l~~~L~~~G~~v~~~~---~~~nvia~i~g~~~p~I~l~~H~DtVP~ 167 (336)
+..+++++++++|++|||.+ ++|.++++|+.++|+ |++++... ++.|+++.. + .|+|+|+|||||||.
T Consensus 3 ~~~~~~~~~l~~Lv~i~s~~~~~~~~e~~~~~~l~~~l~--g~~~~~~~~~~~~~nli~~~-g--~~~lll~gH~DtVp~ 77 (364)
T PRK08737 3 DLLESTLDHLQALVSFDTRNPPRAITTGGIFDYLRAQLP--GFQVEVIDHGAGAVSLYAVR-G--TPKYLFNVHLDTVPD 77 (364)
T ss_pred ccHHHHHHHHHHHhCCCCcCCCCCCCcHHHHHHHHHHhC--CCEEEEecCCCCceEEEEEc-C--CCeEEEEeeeCCCCC
Confidence 34568899999999999984 357899999999996 89877643 356899874 2 378999999999998
Q ss_pred C-CccCCccccc-cCCeeeecCC---cHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCcc--hHHHHHHcCCCCCCc
Q 019753 168 Q-EAVEWEYKSK-VAGKMHACGH---DAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN--GAKRMMADGALEDVE 240 (336)
Q Consensus 168 ~-~~~~~pf~~~-~~G~~~g~G~---dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g~--Ga~~li~~g~~~~~d 240 (336)
+ .|+.+||.+. .+|++||||. ++++|+++.|++. ++++|.|+|++|||.|+ |++.+++.+. +.|
T Consensus 78 ~~~w~~~Pf~~~~~~g~lyGrGa~DmKg~~aa~l~a~~~-------~~~~v~~~~~~dEE~g~~~g~~~~~~~~~--~~~ 148 (364)
T PRK08737 78 SPHWSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAANA-------GDGDAAFLFSSDEEANDPRCVAAFLARGI--PYE 148 (364)
T ss_pred CCCCCCCCCceEEECCEEEEECcccchHHHHHHHHHHHc-------cCCCEEEEEEcccccCchhhHHHHHHhCC--CCC
Confidence 5 4777899865 5789999995 4888888887653 35799999999999874 8889998764 579
Q ss_pred EEEEEEeCCCCCceeEEeccCCccceeEEEEEEEEeecCCCCCC-CCCCCHHHHHHHHHHHHHhhhhhc----cCCCCCc
Q 019753 241 AIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANP-HRSVDPVLAASAAVISLQGLVSRE----ANPLDSQ 315 (336)
Q Consensus 241 ~~i~~ept~~~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~P-~~G~NAI~~a~~~i~~L~~l~~~~----~~~~~~~ 315 (336)
++|++||+.. .+... +.|..|++|+++|+++|+|.| +.|+|||..+++++.++.+..... .+.....
T Consensus 149 ~~iv~Ept~~----~~~~~----~kG~~~~~v~v~Gk~aHas~p~~~G~NAI~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 220 (364)
T PRK08737 149 AVLVAEPTMS----EAVLA----HRGISSVLMRFAGRAGHASGKQDPSASALHQAMRWGGQALDHVESLAHARFGGLTGL 220 (364)
T ss_pred EEEEcCCCCc----eeEEe----cceeEEEEEEEEeeccccCCCcccCCCHHHHHHHHHHHHHHHHHhhhhhccCCCCCC
Confidence 9999999753 22221 127899999999999999997 699999999999998876543211 1223356
Q ss_pred eEEEEEEEecCCCc-CCCCC
Q 019753 316 VSLSLWIITTHFAL-NPSFG 334 (336)
Q Consensus 316 tl~vg~I~gG~~~~-~p~~~ 334 (336)
++|+|.|+||++.+ +|+.+
T Consensus 221 t~~vg~i~GG~~~NvVP~~a 240 (364)
T PRK08737 221 RFNIGRVEGGIKANMIAPAA 240 (364)
T ss_pred ceEEeeEecCCCCCcCCCce
Confidence 99999999998764 88864
No 29
>PRK08201 hypothetical protein; Provisional
Probab=100.00 E-value=3.3e-31 Score=265.77 Aligned_cols=213 Identities=17% Similarity=0.167 Sum_probs=171.8
Q ss_pred HHHHHHhcCcchHHHHHHHHHHhhcCCCCCc------cHHHHHHHHHHHHHhCCCe-EEEe--cCCceEEEEecCC-CCC
Q 019753 85 KEVMELARRPETVDWLKSVRRTIHQNPELAF------QEFETSRLLRAELDRMEIG-YKYP--LAKTGIRAWVGTG-GPP 154 (336)
Q Consensus 85 ~~i~~~~~~~~~~~~li~l~~~Lv~iPs~sg------~E~~~~~~l~~~L~~~G~~-v~~~--~~~~nvia~i~g~-~~p 154 (336)
+++.+.++ +.++++++++++|+++||+++ +|.++++||.++|+++|++ ++.. .+++||++++.++ ++|
T Consensus 3 ~~~~~~~~--~~~~~~~~~l~~LV~i~Svs~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~~~~~l~a~~~~~~~~~ 80 (456)
T PRK08201 3 QQVEAYLR--ERREAHLEELKEFLRIPSISALSEHKEDVRKAAEWLAGALEKAGLEHVEIMETAGHPIVYADWLHAPGKP 80 (456)
T ss_pred hHHHHHHH--HHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHcCCCeEEEEecCCCCEEEEEecCCCCCC
Confidence 46788888 888999999999999999985 5788999999999999997 4443 2467899988543 468
Q ss_pred eEEEEeccCcccCC---CccCCccccc-cCCeeeecCC---cHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-ch
Q 019753 155 FVALRADMDALPIQ---EAVEWEYKSK-VAGKMHACGH---DAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-NG 226 (336)
Q Consensus 155 ~I~l~~H~DtVP~~---~~~~~pf~~~-~~G~~~g~G~---dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g-~G 226 (336)
+|+|+||+||||++ .|+.+||.++ .+|++||||. +|++++++.|++.|++.+..++++|.|+|++|||.| .|
T Consensus 81 ~lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g 160 (456)
T PRK08201 81 TVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAVEALLKVEGTLPVNVKFCIEGEEEIGSPN 160 (456)
T ss_pred EEEEEeccCCcCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccCCcc
Confidence 99999999999985 3788899975 5789999995 589999999999998765667889999999999988 48
Q ss_pred HHHHHHcC--CCCCCcEEEEEEeCCCCCc-eeEEeccCCccceeEEEEEEEEeecC--CCCCCCC-CCCHHHHHHHHHHH
Q 019753 227 AKRMMADG--ALEDVEAIFAVHVSHEHPT-GVIGSRPGPLLAGCGFFHAVISGKKG--GAANPHR-SVDPVLAASAAVIS 300 (336)
Q Consensus 227 a~~li~~g--~~~~~d~~i~~ept~~~~~-G~i~~~~G~~~aG~~~~~I~v~G~~a--Has~P~~-G~NAI~~a~~~i~~ 300 (336)
+..++++. .+ +.|++|+.||+...+. ..+.+. ..|..|++|+++|+++ |++.|.. +.|||..++++|.+
T Consensus 161 ~~~~l~~~~~~~-~~d~~ii~e~~~~~~~~~~i~~g----~kG~~~~~l~v~G~~~~~Hs~~~~~~~~nAi~~~~~~l~~ 235 (456)
T PRK08201 161 LDSFVEEEKDKL-AADVVLISDTTLLGPGKPAICYG----LRGLAALEIDVRGAKGDLHSGLYGGAVPNALHALVQLLAS 235 (456)
T ss_pred HHHHHHhhHHhc-cCCEEEEeCCCcCCCCCEEEEEe----cCCeEEEEEEEEeCCCCCccccccCcCCCHHHHHHHHHHh
Confidence 88877652 12 3699999998742211 123322 2378999999999998 9998554 58999999999999
Q ss_pred HHhh
Q 019753 301 LQGL 304 (336)
Q Consensus 301 L~~l 304 (336)
|+++
T Consensus 236 l~~~ 239 (456)
T PRK08201 236 LHDE 239 (456)
T ss_pred cCCC
Confidence 9763
No 30
>PRK06446 hypothetical protein; Provisional
Probab=100.00 E-value=1.9e-31 Score=266.23 Aligned_cols=200 Identities=16% Similarity=0.200 Sum_probs=162.8
Q ss_pred HHHHHHHHHhhcCCCCCcc-H--HHHHHHHHHHHHhCCCeEEEec--CCceEEEEecCCCCCeEEEEeccCcccCC---C
Q 019753 98 DWLKSVRRTIHQNPELAFQ-E--FETSRLLRAELDRMEIGYKYPL--AKTGIRAWVGTGGPPFVALRADMDALPIQ---E 169 (336)
Q Consensus 98 ~~li~l~~~Lv~iPs~sg~-E--~~~~~~l~~~L~~~G~~v~~~~--~~~nvia~i~g~~~p~I~l~~H~DtVP~~---~ 169 (336)
+++++++++|++|||++++ | .++++||.++|+++|++++... +++|++++++++.+|+|+|+|||||||++ .
T Consensus 2 ~~~~~~l~eLV~i~S~s~~~~~~~~~a~~l~~~l~~~G~~ve~~~~~~~~~lia~~~~~~~~~vll~gH~DvVp~~~~~~ 81 (436)
T PRK06446 2 DEELYTLIEFLKKPSISATGEGIEETANYLKDTMEKLGIKANIERTKGHPVVYGEINVGAKKTLLIYNHYDVQPVDPLSE 81 (436)
T ss_pred hhHHHHHHHHhCCCCCCCCcHhHHHHHHHHHHHHHHCCCeEEEEecCCCCEEEEEecCCCCCEEEEEecccCCCCCcccc
Confidence 4678999999999999864 3 7899999999999999987643 56799999975446899999999999974 4
Q ss_pred ccCCccccc-cCCeeeecCC---cHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-chHHHHHHc--CCCCCCcEE
Q 019753 170 AVEWEYKSK-VAGKMHACGH---DAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-NGAKRMMAD--GALEDVEAI 242 (336)
Q Consensus 170 ~~~~pf~~~-~~G~~~g~G~---dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g-~Ga~~li~~--g~~~~~d~~ 242 (336)
|+.+||++. .+|++||||. +++++++|.|++.+++.+ .++++|.|+|++|||.| .|+++++++ ..+ +.|++
T Consensus 82 W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~~~l~~~~-~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~-~~d~v 159 (436)
T PRK06446 82 WKRDPFSATIENGRIYARGASDNKGTLMARLFAIKHLIDKH-KLNVNVKFLYEGEEEIGSPNLEDFIEKNKNKL-KADSV 159 (436)
T ss_pred ccCCCCceEEECCEEEEEeccCCcHHHHHHHHHHHHHHHcC-CCCCCEEEEEEcccccCCHhHHHHHHHHHHHh-CCCEE
Confidence 788899976 5899999985 589999999998887654 57889999999999998 488888765 123 36887
Q ss_pred EEEEeCCCCCce--eEEeccCCccceeEEEEEEEEe--ecCCCCCCCCCCCHHHHHHHHHHHHHhh
Q 019753 243 FAVHVSHEHPTG--VIGSRPGPLLAGCGFFHAVISG--KKGGAANPHRSVDPVLAASAAVISLQGL 304 (336)
Q Consensus 243 i~~ept~~~~~G--~i~~~~G~~~aG~~~~~I~v~G--~~aHas~P~~G~NAI~~a~~~i~~L~~l 304 (336)
| .||+...+.| .+... ..|..|++++++| +++|+|.|+.|.|||..+++++.+|++.
T Consensus 160 i-~E~~~~~~~~~~~i~~~----~kG~~~~~l~v~G~~~~~Hss~p~~g~NAi~~~~~~l~~l~~~ 220 (436)
T PRK06446 160 I-MEGAGLDPKGRPQIVLG----VKGLLYVELVLRTGTKDLHSSNAPIVRNPAWDLVKLLSTLVDG 220 (436)
T ss_pred E-ECCCCccCCCCeEEEEe----cCeEEEEEEEEEeCCCCCCCCCCccCCCHHHHHHHHHHhhCCC
Confidence 7 4876532223 33322 1378999999999 9999999999999999999999999754
No 31
>PRK08652 acetylornithine deacetylase; Provisional
Probab=99.98 E-value=5.7e-31 Score=253.71 Aligned_cols=214 Identities=15% Similarity=0.099 Sum_probs=170.6
Q ss_pred HHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHhCCCeEEEecC--CceEEEEecCCCCCeEEEEeccCcccCCCccCCcc
Q 019753 98 DWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLA--KTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEY 175 (336)
Q Consensus 98 ~~li~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v~~~~~--~~nvia~i~g~~~p~I~l~~H~DtVP~~~~~~~pf 175 (336)
+++++++++|+++||+|++|.++++||.++|+++|++++.... ..|+++ ++ +|+|+|+|||||||.+. .|+
T Consensus 2 ~~~~~~~~~lv~ips~s~~e~~~~~~l~~~l~~~G~~v~~~~~~~~~~~~~---~~-~~~i~l~~H~D~vp~~~---~~~ 74 (347)
T PRK08652 2 ERAKELLKQLVKIPSPSGQEDEIALHIMEFLESLGYDVHIESDGEVINIVV---NS-KAELFVEVHYDTVPVRA---EFF 74 (347)
T ss_pred hhHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCEEEEEecCceeEEEc---CC-CCEEEEEccccccCCCC---CCE
Confidence 5789999999999999999999999999999999999877432 356665 33 68999999999999743 232
Q ss_pred ccccCCeeeecCC---cHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-chHHHHHHcCCCCCCcEEEEEEeCCCC
Q 019753 176 KSKVAGKMHACGH---DAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-NGAKRMMADGALEDVEAIFAVHVSHEH 251 (336)
Q Consensus 176 ~~~~~G~~~g~G~---dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g-~Ga~~li~~g~~~~~d~~i~~ept~~~ 251 (336)
..+|++||+|. |+++|++|.|++.|++. .++++|.|+|++|||.| .|++.+++. . +.|++|+.||+..
T Consensus 75 --~~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~v~~~~~~dEE~g~~G~~~~~~~--~-~~d~~i~~ep~~~- 146 (347)
T PRK08652 75 --VDGVYVYGTGACDAKGGVAAILLALEELGKE--FEDLNVGIAFVSDEEEGGRGSALFAER--Y-RPKMAIVLEPTDL- 146 (347)
T ss_pred --EECCEEEeccchhhhHHHHHHHHHHHHHhhc--ccCCCEEEEEecCcccCChhHHHHHHh--c-CCCEEEEecCCCC-
Confidence 34689998874 59999999999999854 34679999999999987 599999875 2 3589999998642
Q ss_pred CceeEEeccCCccceeEEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhhccCCCCCceEEEEEEEecCCC-cC
Q 019753 252 PTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVSLSLWIITTHFA-LN 330 (336)
Q Consensus 252 ~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~P~~G~NAI~~a~~~i~~L~~l~~~~~~~~~~~tl~vg~I~gG~~~-~~ 330 (336)
.+.... .|..+++|+++|+++|++.|+.|+|||..+++++.+|+++......... .+++++.|+||... ++
T Consensus 147 ---~i~~~~----~g~~~~~i~~~G~~~H~s~p~~g~nAi~~~a~~i~~l~~~~~~~~~~~~-~~~~~~~i~gg~~~nvi 218 (347)
T PRK08652 147 ---KVAIAH----YGNLEAYVEVKGKPSHGACPESGVNAIEKAFEMLEKLKELLKALGKYFD-PHIGIQEIIGGSPEYSI 218 (347)
T ss_pred ---ceeeec----ccEEEEEEEEEeeecccCCCCcCcCHHHHHHHHHHHHHHHHHhhhcccC-CCCcceeeecCCCCCcc
Confidence 333222 3789999999999999999999999999999999999887533221222 36788889999764 48
Q ss_pred CCCC
Q 019753 331 PSFG 334 (336)
Q Consensus 331 p~~~ 334 (336)
|+.+
T Consensus 219 P~~~ 222 (347)
T PRK08652 219 PALC 222 (347)
T ss_pred CCcE
Confidence 8764
No 32
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=99.98 E-value=5.5e-31 Score=255.79 Aligned_cols=217 Identities=17% Similarity=0.129 Sum_probs=174.5
Q ss_pred HHHHHHHhhcCCCCCccHHHHHHHHHHHHHhCCCeEEEec------CCceEEEEecCC-CCCeEEEEeccCcccCCCccC
Q 019753 100 LKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPL------AKTGIRAWVGTG-GPPFVALRADMDALPIQEAVE 172 (336)
Q Consensus 100 li~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v~~~~------~~~nvia~i~g~-~~p~I~l~~H~DtVP~~~~~~ 172 (336)
+++++++|++|||++++|.++++||.++|+++|+++++.. +++|++++++++ ++|+|+|+||+||||.++
T Consensus 2 ~~~~~~~l~~i~s~s~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~l~~H~D~V~~~~--- 78 (361)
T TIGR01883 2 LKKYFLELIQIDSESGKEKAILTYLKKQITKLGIPVSLDEVPAEVSNDNNLIARLPGTVKFDTIFFCGHMDTVPPGA--- 78 (361)
T ss_pred hHHHHHHHeecCCCCCcHHHHHHHHHHHHHHcCCEEEEeccccccCCCceEEEEEeCCCCCCcEEEEeeccccCCCC---
Confidence 6789999999999999999999999999999999987643 368999999765 458999999999999753
Q ss_pred Ccccc-ccCCeeeecCC-----c--HHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-chHHHHHHcCCCCCCcEEE
Q 019753 173 WEYKS-KVAGKMHACGH-----D--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-NGAKRMMADGALEDVEAIF 243 (336)
Q Consensus 173 ~pf~~-~~~G~~~g~G~-----d--g~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g-~Ga~~li~~g~~~~~d~~i 243 (336)
+|.+ ..+|++||||. | ++++++|.+++.|++.+ .++++|.|+|++|||.+ .|++.+.+.+. ..|+++
T Consensus 79 -~~~~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~-~~~~~v~~~~~~~EE~g~~G~~~~~~~~~--~~~~~~ 154 (361)
T TIGR01883 79 -GPEPVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTEE-TPHGTIEFIFTVKEELGLIGMRLFDESKI--TAAYGY 154 (361)
T ss_pred -CCCceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccCchhHhHhChhhc--CcceeE
Confidence 3333 34678888874 6 88999999999998865 57889999999999988 49998876532 357888
Q ss_pred EEEeCCCCCceeEEeccCCccceeEEEEEEEEeecCCCC-CCCCCCCHHHHHHHHHHHHHhhhhhccCCCCCceEEEEEE
Q 019753 244 AVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAA-NPHRSVDPVLAASAAVISLQGLVSREANPLDSQVSLSLWI 322 (336)
Q Consensus 244 ~~ept~~~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas-~P~~G~NAI~~a~~~i~~L~~l~~~~~~~~~~~tl~vg~I 322 (336)
..+++. ..+.+.... .|..+++|+++|+++|++ .|+.|+||+..+++++.+|+... .+ ...++|++.|
T Consensus 155 ~~~~~~--~~~~i~~~~----~g~~~~~i~~~G~~~Ha~~~p~~g~nAi~~~~~~i~~l~~~~---~~--~~~~~~i~~i 223 (361)
T TIGR01883 155 CLDAPG--EVGNIQLAA----PTQVKVDATIAGKDAHAGLVPEDGISAISVARMAIHAMRLGR---ID--EETTANIGSF 223 (361)
T ss_pred EEeCCC--CcceEEecC----CceEEEEEEEEeeecCCCCCcccCcCHHHHHHHHHHhccccC---CC--Ccccccccee
Confidence 777643 234444322 278899999999999986 59999999999999999986531 11 2368999999
Q ss_pred EecCCCc-CCCCC
Q 019753 323 ITTHFAL-NPSFG 334 (336)
Q Consensus 323 ~gG~~~~-~p~~~ 334 (336)
+||+..+ +|+.+
T Consensus 224 ~gG~~~nvVP~~~ 236 (361)
T TIGR01883 224 SGGVNTNIVQDEQ 236 (361)
T ss_pred ecCCccCccCCce
Confidence 9998764 88764
No 33
>PRK07907 hypothetical protein; Provisional
Probab=99.98 E-value=1.3e-30 Score=261.03 Aligned_cols=211 Identities=15% Similarity=0.155 Sum_probs=172.0
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHhhcCCCCCcc------HHHHHHHHHHHHHhCCC-eEEEe--cCCceEEEEecCC-CC
Q 019753 84 SKEVMELARRPETVDWLKSVRRTIHQNPELAFQ------EFETSRLLRAELDRMEI-GYKYP--LAKTGIRAWVGTG-GP 153 (336)
Q Consensus 84 ~~~i~~~~~~~~~~~~li~l~~~Lv~iPs~sg~------E~~~~~~l~~~L~~~G~-~v~~~--~~~~nvia~i~g~-~~ 153 (336)
++++.++++ ++++++++++++|++|||++++ |.++++||.++|+++|+ ++++. .+++|++++++++ ++
T Consensus 6 ~~~~~~~i~--~~~~~~~~ll~~LV~ipS~s~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~nl~a~~~~~~~~ 83 (449)
T PRK07907 6 ADDLRARVA--ELLPRVRADLEELVRIPSVAADPFRREEVARSAEWVADLLREAGFDDVRVVSADGAPAVIGTRPAPPGA 83 (449)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHhcCCCCCCCccchhhHHHHHHHHHHHHHHcCCceEEEEecCCCCEEEEEecCCCCC
Confidence 456888898 8899999999999999999963 78899999999999998 67764 3568999999764 46
Q ss_pred CeEEEEeccCcccCC---CccCCccccc-cCCeeeecCC---cHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-c
Q 019753 154 PFVALRADMDALPIQ---EAVEWEYKSK-VAGKMHACGH---DAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-N 225 (336)
Q Consensus 154 p~I~l~~H~DtVP~~---~~~~~pf~~~-~~G~~~g~G~---dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g-~ 225 (336)
|+|+|+||+||||++ .|+.+||.+. .+|++||||. +|+++++|.|+++| +..++++|.|++++|||.| .
T Consensus 84 ~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l---~~~~~~~i~~~~~~dEE~g~~ 160 (449)
T PRK07907 84 PTVLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRAL---GGDLPVGVTVFVEGEEEMGSP 160 (449)
T ss_pred CEEEEEcccCCCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHHHHh---ccCCCCcEEEEEEcCcccCCc
Confidence 899999999999986 3788899976 5899999995 48999999999988 2456789999999999988 5
Q ss_pred hHHHHHHcCC-CCCCcEEEEEEeCCCCCce--eEEeccCCccceeEEEEEEEE--eecCCCCC-CCCCCCHHHHHHHHHH
Q 019753 226 GAKRMMADGA-LEDVEAIFAVHVSHEHPTG--VIGSRPGPLLAGCGFFHAVIS--GKKGGAAN-PHRSVDPVLAASAAVI 299 (336)
Q Consensus 226 Ga~~li~~g~-~~~~d~~i~~ept~~~~~G--~i~~~~G~~~aG~~~~~I~v~--G~~aHas~-P~~G~NAI~~a~~~i~ 299 (336)
|+++++++.. ..+.|++|+.||+... .+ .+.. + ..|..|++++++ |+++|+|. +..+.|||..+++++.
T Consensus 161 g~~~~l~~~~~~~~~d~~iv~E~~~~~-~~~p~i~~--~--~kG~~~~~l~v~~~G~~~Hss~~~~~~~nAi~~~~~~l~ 235 (449)
T PRK07907 161 SLERLLAEHPDLLAADVIVIADSGNWS-VGVPALTT--S--LRGNADVVVTVRTLEHAVHSGQFGGAAPDALTALVRLLA 235 (449)
T ss_pred cHHHHHHhchHhhcCCEEEEecCCcCC-CCCeEEEE--e--cCCcEEEEEEEEECCCCCCCccccccCCCHHHHHHHHHH
Confidence 8999987631 1246999999986421 11 2322 1 226889999988 89999998 5678999999999999
Q ss_pred HHHhh
Q 019753 300 SLQGL 304 (336)
Q Consensus 300 ~L~~l 304 (336)
+|++.
T Consensus 236 ~l~~~ 240 (449)
T PRK07907 236 TLHDE 240 (449)
T ss_pred hhCCC
Confidence 99764
No 34
>PRK07318 dipeptidase PepV; Reviewed
Probab=99.97 E-value=1.3e-30 Score=262.43 Aligned_cols=236 Identities=14% Similarity=0.067 Sum_probs=175.9
Q ss_pred HHHHhcCcchHHHHHHHHHHhhcCCCCCcc------------HHHHHHHHHHHHHhCCCeEEEecCCceEEEEecC-CCC
Q 019753 87 VMELARRPETVDWLKSVRRTIHQNPELAFQ------------EFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGT-GGP 153 (336)
Q Consensus 87 i~~~~~~~~~~~~li~l~~~Lv~iPs~sg~------------E~~~~~~l~~~L~~~G~~v~~~~~~~nvia~i~g-~~~ 153 (336)
+.++++ ++++++++++++|+++||.+++ |.++++||.++|+++|++++... |+++++.. ...
T Consensus 5 ~~~~~~--~~~~~~~~~l~~lv~i~S~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~G~~~~~~~---n~~~~~~~~~~~ 79 (466)
T PRK07318 5 WKKEVE--KRKDDLIEDLQELLRINSVRDDSKAKEGAPFGPGPVKALEKFLEIAERDGFKTKNVD---NYAGHIEYGEGE 79 (466)
T ss_pred HHHHHH--HhHHHHHHHHHHHhccCcccCCcccccCCCCCccHHHHHHHHHHHHHHCCCEEEEec---CccceEEECCCC
Confidence 567777 7889999999999999999865 56899999999999999988643 66665532 235
Q ss_pred CeEEEEeccCcccCCC-ccCCccccc-cCCeeeecCC---cHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-chH
Q 019753 154 PFVALRADMDALPIQE-AVEWEYKSK-VAGKMHACGH---DAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-NGA 227 (336)
Q Consensus 154 p~I~l~~H~DtVP~~~-~~~~pf~~~-~~G~~~g~G~---dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g-~Ga 227 (336)
|+|+|+||+||||+++ |+.+||.+. .+|++||||. ||++++++.|++.|++.+..++++|.|+|++|||.| .|+
T Consensus 80 ~~l~l~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~DmKgg~aa~l~Al~~l~~~g~~~~~~i~l~~~~DEE~g~~G~ 159 (466)
T PRK07318 80 EVLGILGHLDVVPAGDGWDTDPYEPVIKDGKIYARGTSDDKGPTMAAYYALKIIKELGLPLSKKVRFIVGTDEESGWKCM 159 (466)
T ss_pred CEEEEEEecCCCCCCCCCCCCCcceEEECCEEEEcccccCcHHHHHHHHHHHHHHHcCCCCCccEEEEEEcccccCchhH
Confidence 7999999999999864 778899875 5789999995 589999999999999887778899999999999998 499
Q ss_pred HHHHHcCCCCC----CcE---EEEEEeCC-----------------------CCCcee------EE--------------
Q 019753 228 KRMMADGALED----VEA---IFAVHVSH-----------------------EHPTGV------IG-------------- 257 (336)
Q Consensus 228 ~~li~~g~~~~----~d~---~i~~ept~-----------------------~~~~G~------i~-------------- 257 (336)
+++++...... .|. ++.+|++. +.+.+. ..
T Consensus 160 ~~l~~~~~~~~~~~~~d~~~~vi~~E~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~ 239 (466)
T PRK07318 160 DYYFEHEEAPDFGFSPDAEFPIINGEKGITTFDLVHFEGENEGDYVLVSFKSGLRENMVPDSAEAVITGDDLDDLIAAFE 239 (466)
T ss_pred HHHHHhCCCCCEEEEeCCCCcEEEEEeeeEEEEEEeccccCCCCceeEEEEcCccceecCcccEEEEecCCHHHHHHHHH
Confidence 99988642110 121 35555421 000000 00
Q ss_pred ------eccCCccceeEEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhh------h----h--------------h
Q 019753 258 ------SRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGL------V----S--------------R 307 (336)
Q Consensus 258 ------~~~G~~~aG~~~~~I~v~G~~aHas~P~~G~NAI~~a~~~i~~L~~l------~----~--------------~ 307 (336)
.++|....+..|++|+++|+++|++.|+.|+|||..|++++.+|+.. . . .
T Consensus 240 ~~~~~~~~kG~~~~~~~~~~i~v~G~aaH~s~p~~g~NAI~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (466)
T PRK07318 240 AFLAENGLKGELEEEGGKLVLTVIGKSAHGSTPEKGVNAATYLAKFLNQLNLDGDAKAFLDFAAEYLHEDTRGEKLGIAY 319 (466)
T ss_pred HHHhhcCceEEEEecCCEEEEEEEeeEcccCCCccCccHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCCcccCCCcc
Confidence 01111111234799999999999999999999999999999998741 0 0 0
Q ss_pred ccCCCCCceEEEEEEEecCC
Q 019753 308 EANPLDSQVSLSLWIITTHF 327 (336)
Q Consensus 308 ~~~~~~~~tl~vg~I~gG~~ 327 (336)
.....+..++|+|.|+||+.
T Consensus 320 ~~~~~g~~t~nvg~i~gg~~ 339 (466)
T PRK07318 320 EDDVMGDLTMNVGVFSFDEE 339 (466)
T ss_pred cCCCccCeEEEeeEEEEecC
Confidence 01112457999999999875
No 35
>PRK09104 hypothetical protein; Validated
Probab=99.97 E-value=2.9e-30 Score=259.62 Aligned_cols=214 Identities=13% Similarity=0.134 Sum_probs=172.6
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHhhcCCCCCccH------HHHHHHHHHHHHhCCCeEEEe--cCCceEEEEecCC--CC
Q 019753 84 SKEVMELARRPETVDWLKSVRRTIHQNPELAFQE------FETSRLLRAELDRMEIGYKYP--LAKTGIRAWVGTG--GP 153 (336)
Q Consensus 84 ~~~i~~~~~~~~~~~~li~l~~~Lv~iPs~sg~E------~~~~~~l~~~L~~~G~~v~~~--~~~~nvia~i~g~--~~ 153 (336)
.+++.+.++ ..++++++++++|++|||.|++| .++++||.++|+++|++++.. .+++||++++++. .+
T Consensus 5 ~~~~~~~~~--~~~~~~~~~L~~lv~i~Svs~~~~~~~~~~~~~~~l~~~l~~~G~~v~~~~~~~~~~l~a~~~g~~~~~ 82 (464)
T PRK09104 5 LDPVLDHID--ANLDASLERLFALLRIPSISTDPAYAADCRKAADWLVADLASLGFEASVRDTPGHPMVVAHHEGPTGDA 82 (464)
T ss_pred HHHHHHHHH--HhHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHHHHHHHHHCCCeEEEEecCCCCEEEEEecCCCCCC
Confidence 456888888 88999999999999999999754 788999999999999998763 3467999999753 36
Q ss_pred CeEEEEeccCcccCCC---ccCCcccccc-CC-----eeeecCC---cHHHHHHHHHHHHHHHcCCCCCceEEEEEecCC
Q 019753 154 PFVALRADMDALPIQE---AVEWEYKSKV-AG-----KMHACGH---DAHVAMLIGAAKILKSREHLLKGTVILIFQPAE 221 (336)
Q Consensus 154 p~I~l~~H~DtVP~~~---~~~~pf~~~~-~G-----~~~g~G~---dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dE 221 (336)
|+|+|+||+||||+++ |+.+||.++. +| ++||||. +|+++++|.|++.|++.+..++++|.|+|++||
T Consensus 83 ~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l~~~~~~~~~~i~~~~~~dE 162 (464)
T PRK09104 83 PHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRAWKAVTGSLPVRVTILFEGEE 162 (464)
T ss_pred CEEEEEecccCCCCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcc
Confidence 8999999999999853 7888999753 33 5999995 489999999999999876678889999999999
Q ss_pred CCc-chHHHHHHcCC-CCCCcEEEEEEeCCCCC-ceeEEeccCCccceeEEEEEEEEe--ecCCCCC-CCCCCCHHHHHH
Q 019753 222 EAG-NGAKRMMADGA-LEDVEAIFAVHVSHEHP-TGVIGSRPGPLLAGCGFFHAVISG--KKGGAAN-PHRSVDPVLAAS 295 (336)
Q Consensus 222 E~g-~Ga~~li~~g~-~~~~d~~i~~ept~~~~-~G~i~~~~G~~~aG~~~~~I~v~G--~~aHas~-P~~G~NAI~~a~ 295 (336)
|.| .|.++++.+.. ...+|++|+.|++...+ ...+.+.. .|..|++|+++| +++|++. |+.|.|||..++
T Consensus 163 E~g~~g~~~~l~~~~~~~~~d~~iv~E~~~~~~~~~~i~~~~----kG~~~~~l~v~g~~~~~Hss~~~~~g~nai~~~~ 238 (464)
T PRK09104 163 ESGSPSLVPFLEANAEELKADVALVCDTGMWDRETPAITTSL----RGLVGEEVTITAADRDLHSGLFGGAAANPIRVLT 238 (464)
T ss_pred ccCCccHHHHHHhhHHhcCCCEEEEeCCCCCCCCCeEEEeec----CCeEEEEEEEEeCCCCccccccCCccCCHHHHHH
Confidence 998 47777765421 11469999999753111 12343221 278999999999 7899997 789999999999
Q ss_pred HHHHHHHh
Q 019753 296 AAVISLQG 303 (336)
Q Consensus 296 ~~i~~L~~ 303 (336)
+++.+|++
T Consensus 239 ~~l~~l~~ 246 (464)
T PRK09104 239 RILAGLHD 246 (464)
T ss_pred HHHHhccC
Confidence 99999975
No 36
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=99.97 E-value=3.5e-30 Score=249.76 Aligned_cols=215 Identities=17% Similarity=0.131 Sum_probs=171.0
Q ss_pred HHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHhCCCeEEEecCCceEEEEecCCCCCeEEEEeccCcccCCCccCCccc
Q 019753 97 VDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYK 176 (336)
Q Consensus 97 ~~~li~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v~~~~~~~nvia~i~g~~~p~I~l~~H~DtVP~~~~~~~pf~ 176 (336)
.+++++++++|+++||++++|.++++|+.++|+++|++++.+. ..|++++++++ +|+|+|+||+||||.. .||.
T Consensus 5 ~~~~~~~l~~Lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~-~~n~i~~~~~~-~~~l~~~~H~DtVp~~----~p~~ 78 (348)
T PRK04443 5 ALEARELLKGLVEIPSPSGEEAAAAEFLVEFMESHGREAWVDE-AGNARGPAGDG-PPLVLLLGHIDTVPGD----IPVR 78 (348)
T ss_pred hHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHcCCEEEEcC-CCcEEEEcCCC-CCEEEEEeeccccCCC----CCcE
Confidence 3678999999999999999999999999999999999987753 35899998544 6899999999999952 3663
Q ss_pred cccCCeeeecCC---cHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCcc-hHHHHHHcCCCCCCcEEEEEEeCCCCC
Q 019753 177 SKVAGKMHACGH---DAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMMADGALEDVEAIFAVHVSHEHP 252 (336)
Q Consensus 177 ~~~~G~~~g~G~---dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g~-Ga~~li~~g~~~~~d~~i~~ept~~~~ 252 (336)
..+|++||||. +|++++++.|+++| +..++++|.|+|++|||.|+ |...++.++. .+|++|++||+..
T Consensus 79 -~~~g~iyGrG~~D~Kg~~aa~l~A~~~l---~~~~~~~i~~~~~~dEE~g~~~~~~~l~~~~--~~d~~iv~Ept~~-- 150 (348)
T PRK04443 79 -VEDGVLWGRGSVDAKGPLAAFAAAAARL---EALVRARVSFVGAVEEEAPSSGGARLVADRE--RPDAVIIGEPSGW-- 150 (348)
T ss_pred -eeCCeEEeecccccccHHHHHHHHHHHh---cccCCCCEEEEEEcccccCChhHHHHHHhcc--CCCEEEEeCCCCc--
Confidence 35799999985 58999999999988 34688999999999999983 4555555543 5799999998752
Q ss_pred ceeEEeccCCccceeEEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhh---hccCCCCCceEEEEEEEecCCCc
Q 019753 253 TGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVS---REANPLDSQVSLSLWIITTHFAL 329 (336)
Q Consensus 253 ~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~P~~G~NAI~~a~~~i~~L~~l~~---~~~~~~~~~tl~vg~I~gG~~~~ 329 (336)
+.+... ..|..+++|+++|+++|+|.| |+|||..+++++.+|+++.. .....++..++|++.|+.+ .+.
T Consensus 151 -~~i~~~----~kG~~~~~l~~~G~~~Hss~~--g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~i~~~-~n~ 222 (348)
T PRK04443 151 -DGITLG----YKGRLLVTYVATSESFHSAGP--EPNAAEDAIEWWLAVEAWFEANDGRERVFDQVTPKLVDFDSS-SDG 222 (348)
T ss_pred -cceeee----cccEEEEEEEEEeCCCccCCC--CCCHHHHHHHHHHHHHHHHhcCccccccccccceeeeEEecC-CCC
Confidence 123222 127899999999999999988 89999999999999988643 1112345678999999833 345
Q ss_pred CCCC
Q 019753 330 NPSF 333 (336)
Q Consensus 330 ~p~~ 333 (336)
+|+.
T Consensus 223 iP~~ 226 (348)
T PRK04443 223 LTVE 226 (348)
T ss_pred CCce
Confidence 7764
No 37
>PRK07906 hypothetical protein; Provisional
Probab=99.97 E-value=3.4e-30 Score=256.12 Aligned_cols=230 Identities=14% Similarity=0.152 Sum_probs=177.0
Q ss_pred HHHHHHhhcCCCCC------ccHHHHHHHHHHHHHhCCCeEEEec---CCceEEEEecCC--CCCeEEEEeccCcccCC-
Q 019753 101 KSVRRTIHQNPELA------FQEFETSRLLRAELDRMEIGYKYPL---AKTGIRAWVGTG--GPPFVALRADMDALPIQ- 168 (336)
Q Consensus 101 i~l~~~Lv~iPs~s------g~E~~~~~~l~~~L~~~G~~v~~~~---~~~nvia~i~g~--~~p~I~l~~H~DtVP~~- 168 (336)
++++++|+++||++ ++|.++++||.++|+++|++++... ++.|+++++++. ..|+|+|+||+||||.+
T Consensus 2 ~~ll~~Lv~i~S~s~~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nv~~~~~g~~~~~~~lll~~H~DtVp~~~ 81 (426)
T PRK07906 2 VDLCSELIRIDTTNTGDGTGKGEREAAEYVAEKLAEVGLEPTYLESAPGRANVVARLPGADPSRPALLVHGHLDVVPAEA 81 (426)
T ss_pred hHHHHHHhcccccCCCCCCCchHHHHHHHHHHHHHhCCCCeEEeecCCCceEEEEEEeCCCCCCCcEEEEcccccCCCCc
Confidence 67899999999998 7899999999999999999987643 467999999754 24799999999999985
Q ss_pred -CccCCccccc-cCCeeeecCC---cHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc--chHHHHHHcC--CCCCC
Q 019753 169 -EAVEWEYKSK-VAGKMHACGH---DAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG--NGAKRMMADG--ALEDV 239 (336)
Q Consensus 169 -~~~~~pf~~~-~~G~~~g~G~---dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g--~Ga~~li~~g--~~~~~ 239 (336)
.|+.+||.+. .+|++||||. +++++++|+|+++|++.+..++++|.|+|++|||.+ .|++.+++.. .++..
T Consensus 82 ~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~~g~~~l~~~~~~~~~~~ 161 (426)
T PRK07906 82 ADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLARTGRRPPRDLVFAFVADEEAGGTYGAHWLVDNHPELFEGV 161 (426)
T ss_pred ccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEEecCcccchhhhHHHHHHHHHHhccch
Confidence 4778899975 5899999995 489999999999999887788999999999999997 3999998752 22223
Q ss_pred cEEEEEEeCCC---CCc--eeEEeccCCccceeEEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhhc------
Q 019753 240 EAIFAVHVSHE---HPT--GVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSRE------ 308 (336)
Q Consensus 240 d~~i~~ept~~---~~~--G~i~~~~G~~~aG~~~~~I~v~G~~aHas~P~~G~NAI~~a~~~i~~L~~l~~~~------ 308 (336)
+ +++.|++.. .+. ....+..+ ..|..+++|+++|+++|++.|+ +.|||..++++|.+|+++..+.
T Consensus 162 ~-~ii~e~~~~~~~~~~~~~~~~i~~~--~kG~~~~~v~v~G~~~Hss~p~-~~nAi~~~~~~l~~l~~~~~~~~~~~~~ 237 (426)
T PRK07906 162 T-EAISEVGGFSLTVPGRDRLYLIETA--EKGLAWMRLTARGRAGHGSMVN-DDNAVTRLAEAVARIGRHRWPLVLTPTV 237 (426)
T ss_pred h-eEEECCCceeeccCCCccEEEEEec--cceEEEEEEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHhCCCCcccCHHH
Confidence 3 345566431 010 11111122 2388999999999999999986 4999999999999997542100
Q ss_pred --------------cCCC-------------------CCceEEEEEEEecCCC-cCCCCC
Q 019753 309 --------------ANPL-------------------DSQVSLSLWIITTHFA-LNPSFG 334 (336)
Q Consensus 309 --------------~~~~-------------------~~~tl~vg~I~gG~~~-~~p~~~ 334 (336)
.++. ..+++|++.|+||... ++|+.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~t~~~~~i~gG~~~NviP~~~ 297 (426)
T PRK07906 238 RAFLDGVAELTGLEFDPDDPDALLAKLGPAARMVGATLRNTANPTMLKAGYKVNVIPGTA 297 (426)
T ss_pred HHHHHHhhhhcCcccCcccHHHHHHHHhhcCcchhhhhcccccceeEeccCccccCCCce
Confidence 0010 0359999999999865 488753
No 38
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=99.97 E-value=5.5e-30 Score=248.05 Aligned_cols=210 Identities=13% Similarity=0.072 Sum_probs=169.5
Q ss_pred chHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHhCCCeEEEecCCceEEEEecCCCCCeEEEEeccCcccCCCccCCc
Q 019753 95 ETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWE 174 (336)
Q Consensus 95 ~~~~~li~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v~~~~~~~nvia~i~g~~~p~I~l~~H~DtVP~~~~~~~p 174 (336)
.+.+++++++++|++|||++++|.++++||.++|+++|++++++.. .|++. .+ .|+|+|+||+||||. +
T Consensus 7 ~~~~~~~~~l~~lv~i~s~s~~e~~~~~~l~~~l~~~g~~~~~~~~-~~~~~--~g--~~~lll~gH~DtVp~------~ 75 (346)
T PRK00466 7 LVKQKAKELLLDLLSIYTPSGNETNATKFFEKISNELNLKLEILPD-SNSFI--LG--EGDILLASHVDTVPG------Y 75 (346)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCeEEEecC-CCcEe--cC--CCeEEEEeccccCCC------C
Confidence 3457889999999999999999999999999999999999887543 46553 22 478999999999994 2
Q ss_pred cccc-cCCeeeecCC---cHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-chHHHHHHcCCCCCCcEEEEEEeCC
Q 019753 175 YKSK-VAGKMHACGH---DAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-NGAKRMMADGALEDVEAIFAVHVSH 249 (336)
Q Consensus 175 f~~~-~~G~~~g~G~---dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g-~Ga~~li~~g~~~~~d~~i~~ept~ 249 (336)
|.+. .+|++||||. +|++|++|.|+++|++.+ .+|.|+|++|||.+ .|++++++++. ++|+++++||+.
T Consensus 76 ~~~~~~~g~iyGrG~~DmKgg~aa~l~a~~~l~~~~----~~i~~~~~~dEE~g~~G~~~l~~~~~--~~d~~i~~ep~~ 149 (346)
T PRK00466 76 IEPKIEGEVIYGRGAVDAKGPLISMIIAAWLLNEKG----IKVMVSGLADEESTSIGAKELVSKGF--NFKHIIVGEPSN 149 (346)
T ss_pred CCceeeCCEEEecCccccchHHHHHHHHHHHHHHcC----CCEEEEEEcCcccCCccHHHHHhcCC--CCCEEEEcCCCC
Confidence 4433 5799999995 488999999999998754 36999999999987 59999998863 479999999875
Q ss_pred CCCceeEEeccCCccceeEEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhhccCCCCCceEEEEEEEecCCCc
Q 019753 250 EHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSREANPLDSQVSLSLWIITTHFAL 329 (336)
Q Consensus 250 ~~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~P~~G~NAI~~a~~~i~~L~~l~~~~~~~~~~~tl~vg~I~gG~~~~ 329 (336)
. +.+.. + ..|..+++|+++|+++|+|.|+ .|||..+++++.+|+++. ......++|+|.|+||+..+
T Consensus 150 ~---~~i~~--~--~kG~~~~~i~v~G~~~Has~p~--~nAi~~~~~~l~~l~~~~----~~~~~~t~~~~~i~gG~~~N 216 (346)
T PRK00466 150 G---TDIVV--E--YRGSIQLDIMCEGTPEHSSSAK--SNLIVDISKKIIEVYKQP----ENYDKPSIVPTIIRAGESYN 216 (346)
T ss_pred C---CceEE--E--eeEEEEEEEEEEeeccccCCCC--cCHHHHHHHHHHHHHhcc----ccCCCCcceeeEEecCCcCc
Confidence 2 12322 1 2379999999999999999986 599999999999997652 22345799999999998764
Q ss_pred -CCCCC
Q 019753 330 -NPSFG 334 (336)
Q Consensus 330 -~p~~~ 334 (336)
+|+.+
T Consensus 217 vvP~~a 222 (346)
T PRK00466 217 VTPAKL 222 (346)
T ss_pred ccCCce
Confidence 88764
No 39
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=99.97 E-value=6.6e-30 Score=257.44 Aligned_cols=232 Identities=13% Similarity=0.029 Sum_probs=172.8
Q ss_pred HHHHhcCcchHHHHHHHHHHhhcCCCCCc------------cHHHHHHHHHHHHHhCCCeEEEecCCceEEEEecC-CCC
Q 019753 87 VMELARRPETVDWLKSVRRTIHQNPELAF------------QEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGT-GGP 153 (336)
Q Consensus 87 i~~~~~~~~~~~~li~l~~~Lv~iPs~sg------------~E~~~~~~l~~~L~~~G~~v~~~~~~~nvia~i~g-~~~ 153 (336)
+.+.++ +.++++++++++|+++||.+. ++.++++++.++|+++||+++..+ |+++.+.. .++
T Consensus 4 ~~~~i~--~~~~~~~~~l~~lv~ipS~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~---~~~~~~~~~~~~ 78 (466)
T TIGR01886 4 FKEEVE--ARKDALLEDLEELLRIDSSEDLENATEEYPFGPGPVDALTKFLSFAERDGFTTKNFD---NYAGHVEYGAGD 78 (466)
T ss_pred HHHHHH--HhHHHHHHHHHHHhCCCCcCCCCCCCccCCCChhHHHHHHHHHHHHHHCCCeEEEec---CCceeEEecCCC
Confidence 455666 778999999999999999964 457788999999999999988643 33343322 246
Q ss_pred CeEEEEeccCcccCC-CccCCccccc-cCCeeeecCC---cHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-chH
Q 019753 154 PFVALRADMDALPIQ-EAVEWEYKSK-VAGKMHACGH---DAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-NGA 227 (336)
Q Consensus 154 p~I~l~~H~DtVP~~-~~~~~pf~~~-~~G~~~g~G~---dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g-~Ga 227 (336)
|+|+|+||+||||++ .|+.+||.++ ++|++||||. +|+++++|.|+++|++.+..++++|.|+|++|||.| .|+
T Consensus 79 ~~l~~~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~~a~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~ 158 (466)
T TIGR01886 79 ERLGIIGHMDVVPAGEGWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAMKILKELGLPPSKKIRFVVGTNEETGWVDM 158 (466)
T ss_pred CEEEEEeecccCCCCCCCcCCCCCeEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCCCEEEEEECccccCcccH
Confidence 899999999999986 4888999986 5789999995 488899999999999988888999999999999998 599
Q ss_pred HHHHHcCCCCCCcEE---------EEEEeCCCCCceeEEec-----------------------------cCC-------
Q 019753 228 KRMMADGALEDVEAI---------FAVHVSHEHPTGVIGSR-----------------------------PGP------- 262 (336)
Q Consensus 228 ~~li~~g~~~~~d~~---------i~~ept~~~~~G~i~~~-----------------------------~G~------- 262 (336)
+++++++. .+|++ +.+|++... -.+..+ .++
T Consensus 159 ~~~~~~~~--~~d~~~~~d~~~~~~~ge~g~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~i~~~~~~~~~~ 234 (466)
T TIGR01886 159 DYYFKHEE--TPDFGFSPDAEFPIINGEKGNFT--LELSFKGDNKGDYVLDSFKAGLAENMVPQVARAVISGPDAEALKA 234 (466)
T ss_pred HHHHhcCc--CCCEEEECCCCceeEEEecceEE--EEEEEecCCCCceeEEEEEcCCcCCccCCeeEEEEecCCHHHHHH
Confidence 99998754 24664 334432210 000000 000
Q ss_pred ------cccee---------EEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHH----------Hhhhh-----------
Q 019753 263 ------LLAGC---------GFFHAVISGKKGGAANPHRSVDPVLAASAAVISL----------QGLVS----------- 306 (336)
Q Consensus 263 ------~~aG~---------~~~~I~v~G~~aHas~P~~G~NAI~~a~~~i~~L----------~~l~~----------- 306 (336)
.+.|. .|++|+++|+++|+|.|+.|+|||..|++++..+ +.+..
T Consensus 235 ~~~~~~~~kg~~~~~~~~~~~~~~i~v~G~~aH~s~P~~G~NAi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 314 (466)
T TIGR01886 235 AYESFLADKASLDGSFEINDESATIVLIGKGAHGAAPQVGINSATFLALFLNQYAFAGGAKNFIHFLAEVEHEDFYGEKL 314 (466)
T ss_pred HHHHHHhhccCceEEEEEeCCEEEEEEEeeEcccCCCCCCcCHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCcccC
Confidence 01122 2799999999999999999999999999988873 22211
Q ss_pred ---hccCCCCCceEEEEEEEecCC
Q 019753 307 ---REANPLDSQVSLSLWIITTHF 327 (336)
Q Consensus 307 ---~~~~~~~~~tl~vg~I~gG~~ 327 (336)
...+.++.+++|+|.|+||..
T Consensus 315 ~~~~~~~~~g~~S~nvgvI~gG~~ 338 (466)
T TIGR01886 315 GIAFHDELMGDLAMNAGMFDFDHA 338 (466)
T ss_pred CCcccccCcCceEEEeEEEEEecC
Confidence 011224567999999999964
No 40
>PRK08262 hypothetical protein; Provisional
Probab=99.97 E-value=5.1e-30 Score=259.16 Aligned_cols=203 Identities=15% Similarity=0.161 Sum_probs=158.5
Q ss_pred chHHHHHHHHHHhhcCCCCCccHH---------HHHHHHHHHHHhCCCeEEEe-cCCceEEEEecCC-CC-CeEEEEecc
Q 019753 95 ETVDWLKSVRRTIHQNPELAFQEF---------ETSRLLRAELDRMEIGYKYP-LAKTGIRAWVGTG-GP-PFVALRADM 162 (336)
Q Consensus 95 ~~~~~li~l~~~Lv~iPs~sg~E~---------~~~~~l~~~L~~~G~~v~~~-~~~~nvia~i~g~-~~-p~I~l~~H~ 162 (336)
..++++++++++|+++||+|++|. ++++||.++|+.+|++++.. .++.|+++.+.+. ++ |+|+|+|||
T Consensus 41 ~~~~~~v~~L~~lv~i~S~s~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~~~~~~~~vv~~~~g~~~~~~~ill~gH~ 120 (486)
T PRK08262 41 VDEDAAAERLSEAIRFRTISNRDRAEDDAAAFDALHAHLEESYPAVHAALEREVVGGHSLLYTWKGSDPSLKPIVLMAHQ 120 (486)
T ss_pred CCHHHHHHHHHHhcccceeccCCCCcccHHHHHHHHHHHHHhChhhhceeEEEEECCccEEEEEECCCCCCCeEEEECcc
Confidence 346889999999999999998763 48899999999999986653 2336788887554 33 899999999
Q ss_pred CcccCCC-----ccCCccccc-cCCeeeecC---CcHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-chHHHHHH
Q 019753 163 DALPIQE-----AVEWEYKSK-VAGKMHACG---HDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-NGAKRMMA 232 (336)
Q Consensus 163 DtVP~~~-----~~~~pf~~~-~~G~~~g~G---~dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g-~Ga~~li~ 232 (336)
||||.++ |+.+||.++ .+|++|||| +||+++++|.|++.|++.+..++++|.|+|++|||.| .|++++++
T Consensus 121 DvVp~~~~~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~aa~L~A~~~l~~~~~~l~~~I~llf~~dEE~g~~G~~~l~~ 200 (486)
T PRK08262 121 DVVPVAPGTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILEAAEALLAQGFQPRRTIYLAFGHDEEVGGLGARAIAE 200 (486)
T ss_pred cccCCCCCCcccCccCCCceEeeCCEEEecCccccchhHHHHHHHHHHHHHcCCCCCCeEEEEEecccccCCcCHHHHHH
Confidence 9999853 566799976 579999999 4699999999999999887778999999999999987 48888875
Q ss_pred c----CCCCCCcEEE------EEEeC--CCCCceeEEeccCCccceeEEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHH
Q 019753 233 D----GALEDVEAIF------AVHVS--HEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVIS 300 (336)
Q Consensus 233 ~----g~~~~~d~~i------~~ept--~~~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~P~~G~NAI~~a~~~i~~ 300 (336)
. +. +.|+++ ..++. ...|.+.+... ..|..+++|+++|+++|++.|+. .|||..++++|.+
T Consensus 201 ~l~~~~~--~~~~~~~~~~~i~~~~~~~~~~p~~~i~~~----~kG~~~~~i~v~G~~~Hss~p~~-~nai~~l~~~l~~ 273 (486)
T PRK08262 201 LLKERGV--RLAFVLDEGGAITEGVLPGVKKPVALIGVA----EKGYATLELTARATGGHSSMPPR-QTAIGRLARALTR 273 (486)
T ss_pred HHHHhcC--CEEEEEeCCceecccccCCCCceEEeeEEe----eeeeEEEEEEEecCCCCCCCCCC-CCHHHHHHHHHHH
Confidence 3 22 234433 22211 12233333322 23789999999999999999999 9999999999999
Q ss_pred HHhh
Q 019753 301 LQGL 304 (336)
Q Consensus 301 L~~l 304 (336)
|++.
T Consensus 274 l~~~ 277 (486)
T PRK08262 274 LEDN 277 (486)
T ss_pred HhhC
Confidence 9863
No 41
>PRK07079 hypothetical protein; Provisional
Probab=99.97 E-value=8.5e-29 Score=249.36 Aligned_cols=216 Identities=11% Similarity=-0.006 Sum_probs=166.0
Q ss_pred chHHhHHHHHHHhcCcchHHHHHHHHHHhhcCCCCCc---cHHHHHHHHH----HHHHhCCCeEEEec-----CCceEEE
Q 019753 79 WSRACSKEVMELARRPETVDWLKSVRRTIHQNPELAF---QEFETSRLLR----AELDRMEIGYKYPL-----AKTGIRA 146 (336)
Q Consensus 79 ~~~~~~~~i~~~~~~~~~~~~li~l~~~Lv~iPs~sg---~E~~~~~~l~----~~L~~~G~~v~~~~-----~~~nvia 146 (336)
.+....+++.++++ .+++++++++|++|||.|+ +|.++++|+. ++|+++|+++++.. +++||++
T Consensus 2 ~~~~~~~~~~~~~~----~~~~~~~L~~LV~ipSvs~~~~~~~~~~~~l~~~~~~~l~~~G~~~~~~~~~~~~~~~~vva 77 (469)
T PRK07079 2 TREAAIARAAAYFD----SGAFFADLARRVAYRTESQNPDRAPALRAYLTDEIAPALAALGFTCRIVDNPVAGGGPFLIA 77 (469)
T ss_pred cHHHHHHHHHHhhc----cHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCEEEE
Confidence 45566677777776 2579999999999999987 3456777764 58999999987531 3679999
Q ss_pred EecCC-CCCeEEEEeccCcccCCC--cc--CCccccc-cCCeeeecCC---cHHHHHHHHHHHHHHHc-CCCCCceEEEE
Q 019753 147 WVGTG-GPPFVALRADMDALPIQE--AV--EWEYKSK-VAGKMHACGH---DAHVAMLIGAAKILKSR-EHLLKGTVILI 216 (336)
Q Consensus 147 ~i~g~-~~p~I~l~~H~DtVP~~~--~~--~~pf~~~-~~G~~~g~G~---dg~~A~~L~Aa~~L~~~-~~~l~g~I~~i 216 (336)
.++++ ++|+|+|+||+||||.++ |+ .+||.++ .+|++||||. ||+++++|+|+++|++. +..+.++|.|+
T Consensus 78 ~~~~~~~~~~lll~gH~DvVp~~~~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~~~l~~~~~~~~~~~i~~~ 157 (469)
T PRK07079 78 ERIEDDALPTVLIYGHGDVVRGYDEQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALEQVLAARGGRLGFNVKLL 157 (469)
T ss_pred EeCCCCCCCEEEEEcccCCCCCChHHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEE
Confidence 98654 468999999999999853 76 4899976 5789999985 59999999999998653 46788999999
Q ss_pred EecCCCCc-chHHHHHHcCC-CCCCcEEEEEEeCCCCCc-eeEEeccCCccceeEEEEEEEEee--cCCCCCCCCC--CC
Q 019753 217 FQPAEEAG-NGAKRMMADGA-LEDVEAIFAVHVSHEHPT-GVIGSRPGPLLAGCGFFHAVISGK--KGGAANPHRS--VD 289 (336)
Q Consensus 217 ft~dEE~g-~Ga~~li~~g~-~~~~d~~i~~ept~~~~~-G~i~~~~G~~~aG~~~~~I~v~G~--~aHas~P~~G--~N 289 (336)
|++|||.| .|++.++++.. .-+.|++|+.||+...+. ..+.+ | ..|..|++|+++|+ +.|++ ++.| .|
T Consensus 158 ~~~dEE~g~~G~~~l~~~~~~~~~~d~~iv~e~~~~~~~~~~i~~--g--~kG~~~~~v~v~G~~~~~hs~-~~~g~~~n 232 (469)
T PRK07079 158 IEMGEEIGSPGLAEVCRQHREALAADVLIASDGPRLSAERPTLFL--G--SRGAVNFRLRVNLRDGAHHSG-NWGGLLRN 232 (469)
T ss_pred EECccccCCccHHHHHHHhHHhcCCCEEEEeCCCccCCCCeEEEE--e--cceEEEEEEEEeeCCCCCCCC-ccccccCC
Confidence 99999998 49999988642 113799999987532111 12332 2 23799999999998 44655 4555 79
Q ss_pred HHHHHHHHHHHHHh
Q 019753 290 PVLAASAAVISLQG 303 (336)
Q Consensus 290 AI~~a~~~i~~L~~ 303 (336)
|+..++++|.++.+
T Consensus 233 ai~~l~~ai~~l~~ 246 (469)
T PRK07079 233 PGTVLAHAIASLVD 246 (469)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999999854
No 42
>PRK13381 peptidase T; Provisional
Probab=99.97 E-value=6.1e-29 Score=245.64 Aligned_cols=216 Identities=15% Similarity=0.143 Sum_probs=165.5
Q ss_pred HHHHHHHhhcCCCCCc----------cHHHHHHHHHHHHHhCCCeEEEecCCceEEEEecCC-CC-CeEEEEeccCcccC
Q 019753 100 LKSVRRTIHQNPELAF----------QEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTG-GP-PFVALRADMDALPI 167 (336)
Q Consensus 100 li~l~~~Lv~iPs~sg----------~E~~~~~~l~~~L~~~G~~v~~~~~~~nvia~i~g~-~~-p~I~l~~H~DtVP~ 167 (336)
+++.++++++|||.|+ +|.++++||.++|+++|++....++++||++++++. ++ |+|+|+||+||||.
T Consensus 3 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~nvi~~~~g~~~~~~~lll~~H~D~Vp~ 82 (404)
T PRK13381 3 LTDRFFRYLKVNSQSDAASGTLPSTPGQHELAKLLADELRELGLEDIVIDEHAIVTAKLPGNTPGAPRIGFIAHLDTVDV 82 (404)
T ss_pred HHHHhHhhEEEeccCCCCCCCCcCChhHHHHHHHHHHHHHHcCCCcEEEcCCeEEEEEEecCCCCCCeEEEEEEecCCCc
Confidence 5677889999999987 478999999999999999755445678999999764 44 89999999999998
Q ss_pred CCc-cCC----ccc-------------------c-----ccCCeeeecCC-------cHHHHHHHHHHHHHHHcCCCCCc
Q 019753 168 QEA-VEW----EYK-------------------S-----KVAGKMHACGH-------DAHVAMLIGAAKILKSREHLLKG 211 (336)
Q Consensus 168 ~~~-~~~----pf~-------------------~-----~~~G~~~g~G~-------dg~~A~~L~Aa~~L~~~~~~l~g 211 (336)
+++ ... ||+ + ..+|++||||+ ++++|++|.|++.|++.+ .+++
T Consensus 83 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GrG~~~~g~DmKgg~aa~l~a~~~l~~~~-~~~g 161 (404)
T PRK13381 83 GLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFSDGTSVLGADNKAAIAVVMTLLENLTENE-VEHG 161 (404)
T ss_pred cCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEeCCCccccccccHHHHHHHHHHHHHHHhcC-CCCC
Confidence 652 111 122 1 12567888664 489999999999998764 4688
Q ss_pred eEEEEEecCCCCc-chHHHHHHcCCCCCCcEEEEEEeCCCCCceeEEeccCCccceeEEEEEEEEeecCCCCC-CCCCCC
Q 019753 212 TVILIFQPAEEAG-NGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAAN-PHRSVD 289 (336)
Q Consensus 212 ~I~~ift~dEE~g-~Ga~~li~~g~~~~~d~~i~~ept~~~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~-P~~G~N 289 (336)
+|.|+|++|||.| .|++.++.+++ ..|++++.|... + +.+... ..|..|++|+++|+++|++. |+.|+|
T Consensus 162 ~i~~~~~~dEE~g~~G~~~~~~~~~--~~d~~~~~~~~~--~-~~i~~~----~~G~~~~~v~v~Gk~aHa~~~p~~g~N 232 (404)
T PRK13381 162 DIVVAFVPDEEIGLRGAKALDLARF--PVDFAYTIDCCE--L-GEVVYE----NFNAASAEITITGVTAHPMSAKGVLVN 232 (404)
T ss_pred CEEEEEEcccccccccHHHHHHhcC--CCCEEEEecCCC--c-ceEEEe----cCcceEEEEEEEeEecCCCCCcccCcC
Confidence 9999999999988 69999987643 368888766432 2 333322 13678999999999999885 999999
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCCCceEEEEEEEec
Q 019753 290 PVLAASAAVISLQGLVSREANPLDSQVSLSLWIITT 325 (336)
Q Consensus 290 AI~~a~~~i~~L~~l~~~~~~~~~~~tl~vg~I~gG 325 (336)
||..+++++.+|+++..+........+++++.|+|+
T Consensus 233 AI~~a~~~i~~l~~~~~~~~~~~~~~~i~v~~i~g~ 268 (404)
T PRK13381 233 PILMANDFISHFPRQETPEHTEGREGYIWVNDLQGN 268 (404)
T ss_pred HHHHHHHHHHhCCccCCCCCCCCcccEEEEEeEEeC
Confidence 999999999999886433222223457899999886
No 43
>PRK05469 peptidase T; Provisional
Probab=99.97 E-value=5.4e-29 Score=246.34 Aligned_cols=219 Identities=16% Similarity=0.140 Sum_probs=164.1
Q ss_pred HHHHHHHHHhhcCCCCCcc----------HHHHHHHHHHHHHhCCCe-EEEecCCceEEEEecCC---CCCeEEEEeccC
Q 019753 98 DWLKSVRRTIHQNPELAFQ----------EFETSRLLRAELDRMEIG-YKYPLAKTGIRAWVGTG---GPPFVALRADMD 163 (336)
Q Consensus 98 ~~li~l~~~Lv~iPs~sg~----------E~~~~~~l~~~L~~~G~~-v~~~~~~~nvia~i~g~---~~p~I~l~~H~D 163 (336)
+++++.+++|++|||.|.+ |.++++||.++|+++|++ ++.+ ...||++.+++. ++|+|+|+||||
T Consensus 2 ~~~~~~l~~~~~i~s~s~~~~~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~-~~~~v~~~~~g~~~~~~~~i~l~~H~D 80 (408)
T PRK05469 2 DKLLERFLRYVKIDTQSDENSTTVPSTEGQWDLAKLLVEELKELGLQDVTLD-ENGYVMATLPANVDKDVPTIGFIAHMD 80 (408)
T ss_pred chHHHHHHhhEEeecccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEC-CCeEEEEEecCCCCCCCCeEEEEEecc
Confidence 3578889999999999866 899999999999999997 5543 346899999763 359999999999
Q ss_pred cccCCCc---------------------cCCcccccc--------CCeeee-------cCCcHHHHHHHHHHHHHHHcCC
Q 019753 164 ALPIQEA---------------------VEWEYKSKV--------AGKMHA-------CGHDAHVAMLIGAAKILKSREH 207 (336)
Q Consensus 164 tVP~~~~---------------------~~~pf~~~~--------~G~~~g-------~G~dg~~A~~L~Aa~~L~~~~~ 207 (336)
|||+.+. +.|+|.+.. .+.+|+ +++++++|+++.|+++|++.+.
T Consensus 81 ~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~rG~~~lg~D~Kgglaa~l~a~~~l~~~~~ 160 (408)
T PRK05469 81 TAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLITTDGTTLLGADDKAGIAEIMTALEYLIAHPE 160 (408)
T ss_pred CCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEEEcCCCEeecccchHHHHHHHHHHHHHHhCCC
Confidence 9987431 112222211 123444 5567999999999999988766
Q ss_pred CCCceEEEEEecCCCCcchHHHHHHcCCCCCCcEEEEEEeCCCCCceeEEeccCCccceeEEEEEEEEeecCCCCC-CCC
Q 019753 208 LLKGTVILIFQPAEEAGNGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAAN-PHR 286 (336)
Q Consensus 208 ~l~g~I~~ift~dEE~g~Ga~~li~~g~~~~~d~~i~~ept~~~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~-P~~ 286 (336)
.++++|.|+|++|||.+.|++.++.++. +.|+++..++.+ .|.+.... .|..+++|+++|+++|++. |+.
T Consensus 161 ~~~g~v~~~f~~dEE~g~Ga~~~~~~~~--~~~~~~~~~~~~---~g~~~~~~----~g~~~~~i~v~Gk~~Ha~~~p~~ 231 (408)
T PRK05469 161 IKHGDIRVAFTPDEEIGRGADKFDVEKF--GADFAYTVDGGP---LGELEYEN----FNAASAKITIHGVNVHPGTAKGK 231 (408)
T ss_pred CCCCCEEEEEecccccCCCHHHhhhhhc--CCcEEEEecCCC---cceEEecc----CceeEEEEEEeeecCCCCCCccc
Confidence 6789999999999998789988875432 346666655432 35544321 2578999999999999876 999
Q ss_pred CCCHHHHHHHHHHHHHhhhhhccCCCCCceEEEEEEEecC
Q 019753 287 SVDPVLAASAAVISLQGLVSREANPLDSQVSLSLWIITTH 326 (336)
Q Consensus 287 G~NAI~~a~~~i~~L~~l~~~~~~~~~~~tl~vg~I~gG~ 326 (336)
|+|||..+++++..|+++...........++|+|.|+||+
T Consensus 232 g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~i~~g~i~ggp 271 (408)
T PRK05469 232 MVNALLLAADFHAMLPADETPETTEGYEGFYHLTSIKGTV 271 (408)
T ss_pred ccCHHHHHHHHHHhCCCCCCCCCCCCceEEEEEEEEEEcc
Confidence 9999999999999998764222112223468999999985
No 44
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=99.96 E-value=2.4e-28 Score=247.10 Aligned_cols=218 Identities=16% Similarity=0.134 Sum_probs=171.3
Q ss_pred HHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHhCCCeEEEecCCceEEEEecCC----CCCeEEEEeccCcccCCC---
Q 019753 97 VDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTG----GPPFVALRADMDALPIQE--- 169 (336)
Q Consensus 97 ~~~li~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v~~~~~~~nvia~i~g~----~~p~I~l~~H~DtVP~~~--- 169 (336)
.+++++++++|+++|++|++|.++++||.++|+++|++++++. ..|+++++++. ..|.|+|.|||||||+++
T Consensus 9 ~~~~~~~l~~Lv~ips~S~~e~~~~~~l~~~~~~~G~~~~~d~-~gnvi~~~~~~~g~~~~~~v~l~gH~DtV~~~~~~~ 87 (485)
T PRK15026 9 PQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKGFHVERDQ-VGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDT 87 (485)
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe-cCeEEEEEcCCCCCCCCCEEEEEeeecccCCCCCCc
Confidence 4678999999999999999999999999999999999988764 35888887531 358999999999999853
Q ss_pred ---ccCCccccc-cCCeeeecCC----c--HHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-chHHHHHHcCCCCC
Q 019753 170 ---AVEWEYKSK-VAGKMHACGH----D--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-NGAKRMMADGALED 238 (336)
Q Consensus 170 ---~~~~pf~~~-~~G~~~g~G~----d--g~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g-~Ga~~li~~g~~~~ 238 (336)
|+.+||.+. .+|++||+|. | +++|++|.+ |++.+. .+++|.++|++|||.| .|++.+.. ..+ +
T Consensus 88 ~~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva~~l~~---l~~~~~-~~~~i~~l~t~dEE~G~~ga~~l~~-~~~-~ 161 (485)
T PRK15026 88 VHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAV---LADENV-VHGPLEVLLTMTEEAGMDGAFGLQS-NWL-Q 161 (485)
T ss_pred cccCCCCCceEEEcCCEEEeCCccccCccHHHHHHHHHH---HHhCCC-CCCCEEEEEEcccccCcHhHHHhhh-ccC-C
Confidence 567799865 4679998885 4 455665544 444443 4889999999999998 59999865 333 5
Q ss_pred CcEEEEEEeCCCCCceeEE-eccCCc-------------cceeEEEEEEEEe-ecCCCCC-CCCCC-CHHHHHHHHHHHH
Q 019753 239 VEAIFAVHVSHEHPTGVIG-SRPGPL-------------LAGCGFFHAVISG-KKGGAAN-PHRSV-DPVLAASAAVISL 301 (336)
Q Consensus 239 ~d~~i~~ept~~~~~G~i~-~~~G~~-------------~aG~~~~~I~v~G-~~aHas~-P~~G~-NAI~~a~~~i~~L 301 (336)
.|++|++||+.. |.+. ...|.. ..|..+|+|+++| +++||+. |+.|+ |||..++++|.++
T Consensus 162 ~~~~i~~e~~~~---g~l~~g~~G~~~~~~~~~~~r~~~~~g~~~~~i~v~Gl~ggHsG~~i~~g~~nAi~~la~~l~~~ 238 (485)
T PRK15026 162 ADILINTDSEEE---GEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGGEIHVGLGNANKLLVRFLAGH 238 (485)
T ss_pred cCEEEEeCCCCC---CeEEEeCCCcceEEEEEEEEEEecCCCceEEEEEEECCCCcCChHHHCCCCccHHHHHHHHHHHh
Confidence 799999998632 3331 111110 1356789999999 9999995 99999 9999999999885
Q ss_pred HhhhhhccCCCCCceEEEEEEEecCCCc-CCCCC
Q 019753 302 QGLVSREANPLDSQVSLSLWIITTHFAL-NPSFG 334 (336)
Q Consensus 302 ~~l~~~~~~~~~~~tl~vg~I~gG~~~~-~p~~~ 334 (336)
.+ ..+++++.|+||+..+ +|+.+
T Consensus 239 ~~----------~~~~~v~~i~GG~~~NaIp~~a 262 (485)
T PRK15026 239 AE----------ELDLRLIDFNGGTLRNAIPREA 262 (485)
T ss_pred Hh----------hCCeEEEEEeCCCccCCCCCCc
Confidence 41 3689999999999875 99875
No 45
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=99.96 E-value=3.9e-28 Score=239.97 Aligned_cols=226 Identities=21% Similarity=0.267 Sum_probs=176.1
Q ss_pred chHHHHHHHHHHhhcCCCCC-ccHHHHHHHHHHHHHhCCCeEEEec-C----CceEEEEecCCCC-CeEEEEeccCcccC
Q 019753 95 ETVDWLKSVRRTIHQNPELA-FQEFETSRLLRAELDRMEIGYKYPL-A----KTGIRAWVGTGGP-PFVALRADMDALPI 167 (336)
Q Consensus 95 ~~~~~li~l~~~Lv~iPs~s-g~E~~~~~~l~~~L~~~G~~v~~~~-~----~~nvia~i~g~~~-p~I~l~~H~DtVP~ 167 (336)
..+++++++++.|+++||++ .+|.++++++.++|+++|+.++.+. . ..|++++++++++ |.|+|.||+||||.
T Consensus 10 ~~~~~~~~~l~~lv~~~s~s~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~n~~~~~~~~~~~~~l~l~~H~DvVP~ 89 (409)
T COG0624 10 DLLDDILELLKELVRIPSVSAGEEAEAAELLAEWLEELGFEVEEDEVGPGPGRPNLVARLGGGDGGPTLLLGGHLDVVPA 89 (409)
T ss_pred HhhHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHcCCceEEeecCCCCCceEEEEEecCCCCCCeEEEeccccccCC
Confidence 45678889999999999999 8999999999999999999977642 2 3599999988633 99999999999999
Q ss_pred CC---ccCCccccc-cCCeeeecCC---cHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCcc-hHHHHHHcCC---C
Q 019753 168 QE---AVEWEYKSK-VAGKMHACGH---DAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMMADGA---L 236 (336)
Q Consensus 168 ~~---~~~~pf~~~-~~G~~~g~G~---dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g~-Ga~~li~~g~---~ 236 (336)
+. |+..||.++ .+|++||||. +|.+++++.|++.+.+.+..++++|.++|++|||.++ |...++.... .
T Consensus 90 g~~~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~~~~~~~~~~~ 169 (409)
T COG0624 90 GGGEDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSALKAAGGELPGDVRLLFTADEESGGAGGKAYLEEGEEALG 169 (409)
T ss_pred CCcccCccCCCccEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCeEEEEEEEeccccCCcchHHHHHhcchhhc
Confidence 75 777799976 5689999996 4999999999999998777888999999999999984 6666666543 2
Q ss_pred CCCcEEEEEEeCCCCCce-eEEeccCCccceeEEEEEEEEeecCCCCC--CCCCCC----HHHHHHHHHHHHHhhhhhcc
Q 019753 237 EDVEAIFAVHVSHEHPTG-VIGSRPGPLLAGCGFFHAVISGKKGGAAN--PHRSVD----PVLAASAAVISLQGLVSREA 309 (336)
Q Consensus 237 ~~~d~~i~~ept~~~~~G-~i~~~~G~~~aG~~~~~I~v~G~~aHas~--P~~G~N----AI~~a~~~i~~L~~l~~~~~ 309 (336)
..+|++|..||+.....+ .+.. + ..|..+++|+++|+++|+|. |+.|.| |+..+.+++..+.++...
T Consensus 170 ~~~d~~i~~E~~~~~~~~~~~~~--~--~kG~~~~~v~v~G~~~Has~~~p~~~~n~i~~a~~~~~~~~~~~~~~~~~-- 243 (409)
T COG0624 170 IRPDYEIVGEPTLESEGGDIIVV--G--HKGSLWLEVTVKGKAGHASTTPPDLGRNPIHAAIEALAELIEELGDLAGE-- 243 (409)
T ss_pred cCCCEEEeCCCCCcccCCCeEEE--c--ceeEEEEEEEEEeecccccccCCcccccHHHHHHHHHHHHHHHhcccccc--
Confidence 357999999983211111 1222 2 23799999999999999998 999999 555555555555543211
Q ss_pred CCCC-CceEEEEEEEecCC
Q 019753 310 NPLD-SQVSLSLWIITTHF 327 (336)
Q Consensus 310 ~~~~-~~tl~vg~I~gG~~ 327 (336)
... +.+++++.+.++..
T Consensus 244 -~~~~~~~~~~~~~~~~~~ 261 (409)
T COG0624 244 -GFDGPLGLNVGLILAGPG 261 (409)
T ss_pred -cccCCccccccccccCCc
Confidence 122 57888888887765
No 46
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=99.96 E-value=3.4e-28 Score=241.12 Aligned_cols=198 Identities=15% Similarity=0.159 Sum_probs=151.0
Q ss_pred HHHHHHHHHhhcCCCCCc----------cHHHHHHHHHHHHHhCCCe-EEEecCCceEEEEecCCCC---CeEEEEeccC
Q 019753 98 DWLKSVRRTIHQNPELAF----------QEFETSRLLRAELDRMEIG-YKYPLAKTGIRAWVGTGGP---PFVALRADMD 163 (336)
Q Consensus 98 ~~li~l~~~Lv~iPs~sg----------~E~~~~~~l~~~L~~~G~~-v~~~~~~~nvia~i~g~~~---p~I~l~~H~D 163 (336)
+.+++.+.++++|+|.|+ .|.+++++|.++|+++|++ ++.+.+..||+|++++..+ |.|+|.+|||
T Consensus 3 ~~~~~~f~~~~~i~s~s~~~~~~~ps~~~~~~~a~~l~~~l~~lG~~~v~~d~~~gnv~~~~~~~~~~~~~~i~~~aHmD 82 (410)
T TIGR01882 3 EELLPRFLTYVKVNTRSDENSDTCPSTPGQLTFGNMLVDDLKSLGLQDAHYDEKNGYVIATIPSNTDKDVPTIGFLAHVD 82 (410)
T ss_pred hHHHHHHHhhEEEecccCCCCCCCCCCHhHHHHHHHHHHHHHHcCCceEEEcCCceEEEEEecCCCCCCCCEEEEEEecc
Confidence 456677777788877776 4448999999999999997 8776535799999977533 9999999999
Q ss_pred cccCCCc----------------------------cCCcccc------c-c-CCeeeecCCcHHHHHHHHHHHHHHHcCC
Q 019753 164 ALPIQEA----------------------------VEWEYKS------K-V-AGKMHACGHDAHVAMLIGAAKILKSREH 207 (336)
Q Consensus 164 tVP~~~~----------------------------~~~pf~~------~-~-~G~~~g~G~dg~~A~~L~Aa~~L~~~~~ 207 (336)
|||.... ..+||.. . . ++.++|+++++++|++|.|+++|++.+.
T Consensus 83 Tv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~g~~l~G~D~KgglAa~l~A~~~L~e~~~ 162 (410)
T TIGR01882 83 TADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLITTDGTTLLGADDKAGIAEIMTAADYLINHPE 162 (410)
T ss_pred cCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEEEcCCCEeecccCHHHHHHHHHHHHHHHhCCC
Confidence 9984221 1335542 1 3 4588999999999999999999988644
Q ss_pred CCCceEEEEEecCCCCcchHHHHHHcCCCCCCcEEEEEEeCCCCCceeEEeccCCccceeEEEEEEEEeecCCCCC-CCC
Q 019753 208 LLKGTVILIFQPAEEAGNGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAAN-PHR 286 (336)
Q Consensus 208 ~l~g~I~~ift~dEE~g~Ga~~li~~g~~~~~d~~i~~ept~~~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~-P~~ 286 (336)
.++++|.|+|++|||.|.|++.|..++. +.|+.+...+. +.|.+.... .|..+++|+++|+++|++. ++.
T Consensus 163 ~~~g~I~~~ft~dEE~g~Ga~~l~~~~~--~~~~~~~i~ge---p~g~i~~~~----~g~~~~~I~v~Gk~aHa~~~~~~ 233 (410)
T TIGR01882 163 IKHGTIRVAFTPDEEIGRGAHKFDVKDF--NADFAYTVDGG---PLGELEYET----FSAAAAKITIQGNNVHPGTAKGK 233 (410)
T ss_pred CCCCCEEEEEECcccCCcCcchhhhhhc--CccEEEEeCCC---CCCeEEEcc----ccceEEEEEEEEEecCcccChHH
Confidence 4689999999999999888888875443 34555444432 335554332 2578999999999999998 478
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 019753 287 SVDPVLAASAAVISLQGL 304 (336)
Q Consensus 287 G~NAI~~a~~~i~~L~~l 304 (336)
|+|||..+.+++..|+..
T Consensus 234 g~nAi~~a~~~~~~l~~~ 251 (410)
T TIGR01882 234 MINAAQIAIDLHNLLPED 251 (410)
T ss_pred HHHHHHHHHHHHHhcCCc
Confidence 999999999987777653
No 47
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=99.96 E-value=1.4e-27 Score=239.37 Aligned_cols=225 Identities=14% Similarity=0.088 Sum_probs=163.5
Q ss_pred HHHHHHHHHhhcCCCCCc------------cHHHHHHHHHHHHHhCCCeEEEecCCceEE--EEecCCCCCeEEEEeccC
Q 019753 98 DWLKSVRRTIHQNPELAF------------QEFETSRLLRAELDRMEIGYKYPLAKTGIR--AWVGTGGPPFVALRADMD 163 (336)
Q Consensus 98 ~~li~l~~~Lv~iPs~sg------------~E~~~~~~l~~~L~~~G~~v~~~~~~~nvi--a~i~g~~~p~I~l~~H~D 163 (336)
+++++++++|+++||+++ ++.++++|+.++|+++|++++... |+. +.+++ ..|+|+|+||||
T Consensus 2 ~~~i~ll~~Lv~ipS~s~~~~p~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~---~~~~~~~~~~-~~~~l~l~gH~D 77 (447)
T TIGR01887 2 DEILEDLKELIRIDSVEDLEEAKEGAPFGEGPKKALDKFLELAKRDGFTTENVD---NYAGYAEYGQ-GEEYLGILGHLD 77 (447)
T ss_pred hHHHHHHHHhcCcCcCCCCCCCCCCCCcchhHHHHHHHHHHHHHHcCceEEEec---CceEEEEeCC-CCCeEEEEeecC
Confidence 468999999999999873 247899999999999999988542 433 33432 357999999999
Q ss_pred cccCC-CccCCccccc-cCCeeeecCC---cHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-chHHHHHHcCCCC
Q 019753 164 ALPIQ-EAVEWEYKSK-VAGKMHACGH---DAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-NGAKRMMADGALE 237 (336)
Q Consensus 164 tVP~~-~~~~~pf~~~-~~G~~~g~G~---dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g-~Ga~~li~~g~~~ 237 (336)
|||.+ +|+.+||++. .+|++||||. ||++++++.|++.|++.+..++++|.|+|++|||.| .|+++++++....
T Consensus 78 ~Vp~~~~W~~~Pf~~~~~~g~lyGRGa~D~KG~laa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~ 157 (447)
T TIGR01887 78 VVPAGDGWTSPPFEAEIKDGRIYGRGTLDDKGPTIAALYAMKILKELGLKLKKKIRFIFGTDEETGWACIDYYFEHEEAP 157 (447)
T ss_pred CCCCCCCCcCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcccCcHhHHHHHHhcCCC
Confidence 99986 4788999986 5789999985 588999999999999887778899999999999998 4888887763211
Q ss_pred ----CCcE---EEEEEeC----------------------CCCCceeE------Ee-cc--------------CCcccee
Q 019753 238 ----DVEA---IFAVHVS----------------------HEHPTGVI------GS-RP--------------GPLLAGC 267 (336)
Q Consensus 238 ----~~d~---~i~~ept----------------------~~~~~G~i------~~-~~--------------G~~~aG~ 267 (336)
..|. ++.+|++ .+.+.+.+ .+ .+ .....|.
T Consensus 158 ~~~~~~d~~~~~~~~e~g~~~~~~~v~g~~~~~~~i~~~~~Ge~tn~~p~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~ 237 (447)
T TIGR01887 158 DIGFTPDAEFPIIYGEKGIVTLEISFKDDTEGDVVLESFKAGEAFNMVPDHATAVISGKELLEVEKEKFVFFIAKELEGS 237 (447)
T ss_pred CEEEeCCCCcceEEEecCeEEEEEEeccCCCCceeEEEEeCCCcCCccCcceEEEEeccchhHHHHHHHHHhhhcCcceE
Confidence 1232 4444432 01111110 11 11 0000134
Q ss_pred E-----EEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHH--hhhhh---------------------ccC-CCCCceEE
Q 019753 268 G-----FFHAVISGKKGGAANPHRSVDPVLAASAAVISLQ--GLVSR---------------------EAN-PLDSQVSL 318 (336)
Q Consensus 268 ~-----~~~I~v~G~~aHas~P~~G~NAI~~a~~~i~~L~--~l~~~---------------------~~~-~~~~~tl~ 318 (336)
. |++|+++|+++|+|.|++|+|||..+++++.+++ +...+ ..+ ..+.+++|
T Consensus 238 ~~~~~~~~~i~v~G~~aHss~p~~G~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~t~n 317 (447)
T TIGR01887 238 FEVNDGTATITLEGKSAHGSAPEKGINAATYLALFLAQLNLAGGAKAFLQFLAEYLHEDHYGEKLGIDFHDDVSGDLTMN 317 (447)
T ss_pred EEecCCEEEEEEEeeecccCCCccCccHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCccccCCCcccCCCcCCcEEE
Confidence 4 7999999999999999999999999999999986 21100 001 12457899
Q ss_pred EEEEEecC
Q 019753 319 SLWIITTH 326 (336)
Q Consensus 319 vg~I~gG~ 326 (336)
+|.|++|.
T Consensus 318 vg~I~~g~ 325 (447)
T TIGR01887 318 VGVIDYEN 325 (447)
T ss_pred EEEEEEeC
Confidence 99999885
No 48
>PRK07205 hypothetical protein; Provisional
Probab=99.96 E-value=2.1e-27 Score=237.66 Aligned_cols=208 Identities=16% Similarity=0.128 Sum_probs=155.4
Q ss_pred chHHHHHHHHHHhhcCCCCCccH----------HHHHHHHHHHHHhCCCeEEEecCCceEEEEecCCCCCeEEEEeccCc
Q 019753 95 ETVDWLKSVRRTIHQNPELAFQE----------FETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDA 164 (336)
Q Consensus 95 ~~~~~li~l~~~Lv~iPs~sg~E----------~~~~~~l~~~L~~~G~~v~~~~~~~nvia~i~g~~~p~I~l~~H~Dt 164 (336)
+.++++++++++|+++||.+++| .++++++.++|+++|++++++....+++++++.+ +|+|+|+||+||
T Consensus 8 ~~~~~~~~~l~~lv~i~S~s~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~-~~~lll~gH~Dv 86 (444)
T PRK07205 8 KVQDACVAAIKTLVSYPSVLNEGENGTPFGQAIQDVLEATLDLCQGLGFKTYLDPKGYYGYAEIGQG-EELLAILCHLDV 86 (444)
T ss_pred HhHHHHHHHHHHHcccccccCCCcCCCCCchhHHHHHHHHHHHHHhCCCEEEEcCCCeEEEEEecCC-CcEEEEEEeecc
Confidence 55789999999999999998765 5688899999999999987754344667777533 689999999999
Q ss_pred ccCC---CccCCccccc-cCCeeeecCC---cHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-chHHHHHHcCCC
Q 019753 165 LPIQ---EAVEWEYKSK-VAGKMHACGH---DAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-NGAKRMMADGAL 236 (336)
Q Consensus 165 VP~~---~~~~~pf~~~-~~G~~~g~G~---dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g-~Ga~~li~~g~~ 236 (336)
||++ +|+.+||++. .||++||||. +|+++++|.|+++|++.+..++++|.|+|++|||.+ .|++++++....
T Consensus 87 Vp~~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al~~l~~~~~~~~~~i~l~~~~dEE~g~~g~~~~~~~~~~ 166 (444)
T PRK07205 87 VPEGDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAVKALLDAGVQFNKRIRFIFGTDEETLWRCMNRYNEVEEQ 166 (444)
T ss_pred CCCCCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcccCcccHHHHHhCCCC
Confidence 9985 4777899975 5899999995 599999999999999888788899999999999998 488888764211
Q ss_pred C----CCc--------------EEEEEEeCCCCC--ce----eE---EeccCC---------ccce----eEEEEEEEEe
Q 019753 237 E----DVE--------------AIFAVHVSHEHP--TG----VI---GSRPGP---------LLAG----CGFFHAVISG 276 (336)
Q Consensus 237 ~----~~d--------------~~i~~ept~~~~--~G----~i---~~~~G~---------~~aG----~~~~~I~v~G 276 (336)
. ..| +.+.++|++... .| .+ ...+|. ...| ..+.+|+++|
T Consensus 167 ~~~~~~~~~~~~v~~~ekG~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~l~~~~~~~g~~~~~~~~~v~v~G 246 (444)
T PRK07205 167 ATMGFAPDSSFPLTYAEKGLLQAKLVGPGSDQLELEVGQAFNVVPAKASYQGPKLEAVKKELDKLGFEYVVKENEVTVLG 246 (444)
T ss_pred CCeeECCCCCCceEEEEeceEEEEEEeCCccceEEecCCcccccCceeEEEecCHHHHHHHHHhcCceEeecCcEEEEEe
Confidence 0 112 234444432100 00 00 001111 0012 1244999999
Q ss_pred ecCCCCCCCCCCCHHHHHHHHHHHHHh
Q 019753 277 KKGGAANPHRSVDPVLAASAAVISLQG 303 (336)
Q Consensus 277 ~~aHas~P~~G~NAI~~a~~~i~~L~~ 303 (336)
+++|+|.|+.|+|||..+++++.++++
T Consensus 247 ~~~Hss~p~~g~nAi~~~~~~l~~l~~ 273 (444)
T PRK07205 247 KSVHAKDAPQGINAVIRLAKALVVLEP 273 (444)
T ss_pred EEcccCCCccCcCHHHHHHHHHHhccH
Confidence 999999999999999999999988865
No 49
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=99.96 E-value=1.9e-27 Score=235.21 Aligned_cols=212 Identities=14% Similarity=0.121 Sum_probs=161.4
Q ss_pred HHHHHHHHHHhhcCCC---------CCccHHHHHHHHHHHHHhCCCeEEEecCCceEEEEecCC-CCCeEEEEeccCccc
Q 019753 97 VDWLKSVRRTIHQNPE---------LAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTG-GPPFVALRADMDALP 166 (336)
Q Consensus 97 ~~~li~l~~~Lv~iPs---------~sg~E~~~~~~l~~~L~~~G~~v~~~~~~~nvia~i~g~-~~p~I~l~~H~DtVP 166 (336)
.+++++.+++|+++++ .+++|.++++||.++|+++|++++++ ...|+++++++. ++|.|+|+||+||||
T Consensus 9 ~~~~~~~~~~~~~~~s~~~g~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~-~~~nl~a~~~g~~~~~~l~l~gH~DtVp 87 (412)
T PRK12892 9 GQRVLDDLMELAAIGAAKTGVHRPTYSDAHVAARRRLAAWCEAAGLAVRID-GIGNVFGRLPGPGPGPALLVGSHLDSQN 87 (412)
T ss_pred HHHHHHHHHHHHccCCCCCCeeeCCCCHHHHHHHHHHHHHHHHcCCEEEEc-CCCcEEEEecCCCCCCeEEEEccccCCC
Confidence 3467777777777654 67889999999999999999999874 356999999864 568999999999999
Q ss_pred CCCccCCccccccCCeeeecCCcHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc------chHHHHHHc-------
Q 019753 167 IQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG------NGAKRMMAD------- 233 (336)
Q Consensus 167 ~~~~~~~pf~~~~~G~~~g~G~dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g------~Ga~~li~~------- 233 (336)
.+ |+.||+ ++++++|.|++.|++.+..++++|.|++++|||.+ .|++.++++
T Consensus 88 ~~------------g~~dg~---~Gvaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~ 152 (412)
T PRK12892 88 LG------------GRYDGA---LGVVAGLEAARALNEHGIATRHPLDVVAWCDEEGSRFTPGFLGSRAYAGRLDPADAL 152 (412)
T ss_pred CC------------Ccccch---HHHHHHHHHHHHHHHcCCCCCCCeEEEEecCcccccccCccccHHHHHcCCCHHHHH
Confidence 74 333443 46889999999999988888999999999999984 388888742
Q ss_pred ------------------CCCCCCcEEEEEEeCCCC------------------CceeEEeccCCccceeEEEEEEEEee
Q 019753 234 ------------------GALEDVEAIFAVHVSHEH------------------PTGVIGSRPGPLLAGCGFFHAVISGK 277 (336)
Q Consensus 234 ------------------g~~~~~d~~i~~ept~~~------------------~~G~i~~~~G~~~aG~~~~~I~v~G~ 277 (336)
|+ ..|++++.||+... ..+.+..+ .|..|++|+++|+
T Consensus 153 ~~~~~~~~~~~~~~~~~~g~--~~d~~~~~ep~~~~~~~e~~~~~g~~~e~~~~~~~i~~~~-----kG~~~~~i~v~G~ 225 (412)
T PRK12892 153 AARCRSDGVPLRDALAAAGL--AGRPRPAADRARPKGYLEAHIEQGPVLEQAGLPVGVVTGI-----VGIWQYRITVTGE 225 (412)
T ss_pred hCccCCCCcCHHHHHHHcCC--ChhhcccccccCccEEEEEEeccCHhHhhCCCcEEEEEEe-----ccceEEEEEEEEE
Confidence 11 13556666654210 01122222 3789999999999
Q ss_pred cCCCCC-CC-CCCCHHHHHHHHHHHHHhhhhhccCCCCCceEEEEEEEec-CCC-cCCCCC
Q 019753 278 KGGAAN-PH-RSVDPVLAASAAVISLQGLVSREANPLDSQVSLSLWIITT-HFA-LNPSFG 334 (336)
Q Consensus 278 ~aHas~-P~-~G~NAI~~a~~~i~~L~~l~~~~~~~~~~~tl~vg~I~gG-~~~-~~p~~~ 334 (336)
++|++. |+ .|+|||..+++++.+|+++..+. ..+.++|+|.|+|| .+. ++|+.+
T Consensus 226 ~aHa~~~p~~~g~nAi~~a~~~i~~l~~~~~~~---~~~~~~~vg~i~gg~~~~NvIP~~a 283 (412)
T PRK12892 226 AGHAGTTPMALRRDAGLAAAEMIAAIDEHFPRV---CGPAVVTVGRVALDPGSPSIIPGRV 283 (412)
T ss_pred CCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc---CCCcEEEEEEEEecCCCCeEECCeE
Confidence 999986 75 68999999999999999864332 13479999999987 454 488764
No 50
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=99.96 E-value=4.1e-27 Score=227.03 Aligned_cols=206 Identities=12% Similarity=0.037 Sum_probs=161.9
Q ss_pred HHHHHhhcCCCCCccHHHHHHHHHHHHHhCCCeEEEecCCceEEEEecCCCCCeEEEEeccCcccCCCccCCcccc-ccC
Q 019753 102 SVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYKS-KVA 180 (336)
Q Consensus 102 ~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v~~~~~~~nvia~i~g~~~p~I~l~~H~DtVP~~~~~~~pf~~-~~~ 180 (336)
+++++|+++||++++|.++++||.++|+++|+++..+ ...|+++..+++ +|+|+|+|||||||. +|.. ..+
T Consensus 1 ~~l~~lv~i~s~s~~e~~~~~~l~~~l~~~g~~~~~~-~~~~~~~~~~~~-~~~i~~~~H~D~vp~------~~~~~~~~ 72 (336)
T TIGR01902 1 ELLKDLLEIYSPSGKEANAAKFLEEISKDLGLKLIID-DAGNFILGKGDG-HKKILLAGHVDTVPG------YIPVKIEG 72 (336)
T ss_pred ChHHHHhcCCCCCcchHHHHHHHHHHHHHcCCEEEEC-CCCcEEEEeCCC-CceEEEEccccccCC------CcccEEeC
Confidence 3688999999999999999999999999999998543 346888876433 699999999999984 2333 357
Q ss_pred CeeeecCC---cHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-chHHHHHHcCCCCCCcEEEEEEeCCCCCceeE
Q 019753 181 GKMHACGH---DAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-NGAKRMMADGALEDVEAIFAVHVSHEHPTGVI 256 (336)
Q Consensus 181 G~~~g~G~---dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g-~Ga~~li~~g~~~~~d~~i~~ept~~~~~G~i 256 (336)
|++||+|. ++++|+++.|++.|++. .++|.|+|++|||.| .|+++++++.. .+++|++||+.. +.+
T Consensus 73 g~i~GrG~~D~Kg~~aa~l~a~~~l~~~----~~~i~~~~~~dEE~g~~G~~~~~~~~~---~~~~ii~ept~~---~~i 142 (336)
T TIGR01902 73 GLLYGRGAVDAKGPLIAMIFATWLLNEK----GIKVIVSGLVDEESSSKGAREVIDKNY---PFYVIVGEPSGA---EGI 142 (336)
T ss_pred CEEEEecccCCCcHHHHHHHHHHHHHhC----CCcEEEEEEeCcccCCccHHHHHhhcC---CCEEEEecCCCC---cce
Confidence 89999985 48999999999999764 358999999999998 59999988742 368999998752 223
Q ss_pred EeccCCccceeEEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHh-hhhhccCCCCCceEEEEEEEecCCCc-CCCCC
Q 019753 257 GSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQG-LVSREANPLDSQVSLSLWIITTHFAL-NPSFG 334 (336)
Q Consensus 257 ~~~~G~~~aG~~~~~I~v~G~~aHas~P~~G~NAI~~a~~~i~~L~~-l~~~~~~~~~~~tl~vg~I~gG~~~~-~p~~~ 334 (336)
... ..|..+++++++|+++|++.|. ||+..+.+++.+|.+ +..+ ......+++++.++||.+.+ +|+.+
T Consensus 143 ~~~----~kG~~~~~v~~~G~~~Hss~~~---~ai~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~i~gg~~~nvIP~~a 213 (336)
T TIGR01902 143 TLG----YKGSLQLKIMCEGTPFHSSSAG---NAAELLIDYSKKIIEVYKQP--ENYDKPSIVPTIIRFGESYNDTPAKL 213 (336)
T ss_pred eee----eeeEEEEEEEEEecCcccCCCh---hHHHHHHHHHHHHHHHhccc--cCCCCCcceeEEEEccCCCcCCCceE
Confidence 221 2378999999999999999885 499999999999974 3211 11234578999999998764 88753
No 51
>PRK06156 hypothetical protein; Provisional
Probab=99.95 E-value=9.9e-27 Score=237.36 Aligned_cols=205 Identities=18% Similarity=0.201 Sum_probs=154.5
Q ss_pred chHHHHHHHHHHhhcCCCCCc-----cH----HHHHHHHHHHHHhCCCeEEEecCCceEE-EEecCCCCCeEEEEeccCc
Q 019753 95 ETVDWLKSVRRTIHQNPELAF-----QE----FETSRLLRAELDRMEIGYKYPLAKTGIR-AWVGTGGPPFVALRADMDA 164 (336)
Q Consensus 95 ~~~~~li~l~~~Lv~iPs~sg-----~E----~~~~~~l~~~L~~~G~~v~~~~~~~nvi-a~i~g~~~p~I~l~~H~Dt 164 (336)
+.++++++++++|++|||+++ +| .++++||.++|+++|++++.. .++++ +++++.+.|+|+|+|||||
T Consensus 43 ~~~~~~~~~l~~lv~i~S~~~~~~~~~e~~~~~~~~~~l~~~l~~~G~~~~~~--~~~v~~~~~~g~~~~~l~l~gH~Dv 120 (520)
T PRK06156 43 KYGAAAIESLRELVAFPTVRVEGVPQHENPEFIGFKKLLKSLARDFGLDYRNV--DNRVLEIGLGGSGSDKVGILTHADV 120 (520)
T ss_pred hhHHHHHHHHHHhcCcCcccCCCCCccCCccHHHHHHHHHHHHHHCCCeEEec--CCeEEEEEecCCCCCeEEEEEecCc
Confidence 567899999999999999874 23 356799999999999998653 23344 6776544589999999999
Q ss_pred ccCC--CccC-----Cccccc-cCCeeeecCC---cHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-chHHHHHH
Q 019753 165 LPIQ--EAVE-----WEYKSK-VAGKMHACGH---DAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-NGAKRMMA 232 (336)
Q Consensus 165 VP~~--~~~~-----~pf~~~-~~G~~~g~G~---dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g-~Ga~~li~ 232 (336)
||++ +|+. +||... .+|++||||. |+++++++.|+++|++.+..++++|.|+|++|||.| .|++++++
T Consensus 121 Vp~~~~~W~~~~~~~~Pf~~~~~~g~lyGRG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~G~~~~~~ 200 (520)
T PRK06156 121 VPANPELWVLDGTRLDPFKVTLVGDRLYGRGTEDDKGAIVTALYAMKAIKDSGLPLARRIELLVYTTEETDGDPLKYYLE 200 (520)
T ss_pred cCCCCccCccCCccCCCCceEEECCEEEEcCcccchHHHHHHHHHHHHHHHcCCCCCceEEEEEecccccCchhHHHHHH
Confidence 9985 4776 899976 5789999985 588999999999998887777899999999999998 59999987
Q ss_pred cCCCCCCcE---------EEEEEeCCC------------------------C-----Cce-eEEeccCC-----------
Q 019753 233 DGALEDVEA---------IFAVHVSHE------------------------H-----PTG-VIGSRPGP----------- 262 (336)
Q Consensus 233 ~g~~~~~d~---------~i~~ept~~------------------------~-----~~G-~i~~~~G~----------- 262 (336)
++.. .++ ++..|++.. . |.. .+.+....
T Consensus 201 ~~~~--~~~~~~~D~~~~~~~~E~~~~~~~i~~~~~~~~~~~~~l~~~~gG~~~n~ip~~a~~~~~~~~~~~~~~~~~~~ 278 (520)
T PRK06156 201 RYTP--PDYNITLDAEYPVVTAEKGWGTIMATFPKRAADGKGAEIVAMTGGAFANQIPQTAVATLSGGDPAALAAALQAA 278 (520)
T ss_pred hcCC--CCeEEeeCCCCceEEEecceEEEEEEecCcCCCCCceeEEEEEcCCcCCCCCCccEEEEecCCHHHHHHHHHHH
Confidence 7532 233 345555310 0 000 00000000
Q ss_pred ------ccceeE---------EEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHh
Q 019753 263 ------LLAGCG---------FFHAVISGKKGGAANPHRSVDPVLAASAAVISLQG 303 (336)
Q Consensus 263 ------~~aG~~---------~~~I~v~G~~aHas~P~~G~NAI~~a~~~i~~L~~ 303 (336)
.+.|.. |++|+++|+++|+|.|+.|+|||..+++++.+|++
T Consensus 279 ~~~~~~~~~g~~~~~~~~~~~~~~I~v~Gk~aHsS~P~~G~NAI~~aa~ii~~L~~ 334 (520)
T PRK06156 279 AAAQVKRHGGGFSIDFKRDGKDVTITVTGKSAHSSTPESGVNPVTRLALFLQSLDG 334 (520)
T ss_pred HHHHHhhcccCceEEEEEcCCeEEEEEEeEECCCCCCCCCccHHHHHHHHHHhccc
Confidence 000222 89999999999999999999999999999999976
No 52
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=99.95 E-value=8.3e-27 Score=235.48 Aligned_cols=217 Identities=15% Similarity=0.089 Sum_probs=165.8
Q ss_pred HHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHhCCCeEEEecCCceEEEEecCC----CCCeEEEEeccCcccCC-----
Q 019753 98 DWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTG----GPPFVALRADMDALPIQ----- 168 (336)
Q Consensus 98 ~~li~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v~~~~~~~nvia~i~g~----~~p~I~l~~H~DtVP~~----- 168 (336)
+++++++++|+++|++|++|.++++||.++|+++|++++++. ..|+++++++. +.|.|+|.|||||||.+
T Consensus 4 ~~~~~~l~~l~~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~-~~n~~~~~~~~~g~~~~~~l~l~~HlDtV~~~~~~~~ 82 (477)
T TIGR01893 4 SRVFKYFEEISKIPRPSKNEKEVSNFIVNWAKKLGLEVKQDE-VGNVLIRKPATPGYENHPPIVLQGHMDMVCEKNEDSL 82 (477)
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHcCCeEEEeC-CCeEEEEEcCCCCCCCCCeEEEEeeccccCCCCCCCC
Confidence 578899999999999999999999999999999999988864 46999998642 35899999999999985
Q ss_pred -CccCCccccc-cCCeeeecCC----c--HHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-chHHHHHHcCCCCCC
Q 019753 169 -EAVEWEYKSK-VAGKMHACGH----D--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-NGAKRMMADGALEDV 239 (336)
Q Consensus 169 -~~~~~pf~~~-~~G~~~g~G~----d--g~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g-~Ga~~li~~g~~~~~ 239 (336)
+|+..||.+. .+|++||+|. | ++++++|++++. . ..++++|.++|++|||.| .|++++.++.. ..
T Consensus 83 ~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~~~---~-~~~~~~i~~~~~~dEE~g~~Gs~~l~~~~~--~~ 156 (477)
T TIGR01893 83 HDFEKDPIELIIDGDWLKARGTTLGADNGIGVAMGLAILED---N-NLKHPPLELLFTVDEETGMDGALGLDENWL--SG 156 (477)
T ss_pred CCCCCCCeEEEEeCCEEEECCccccccccHHHHHHHHHHhc---C-CCCCCCEEEEEEeccccCchhhhhcChhhc--CC
Confidence 3567789876 5789999996 6 566666666543 2 335789999999999987 59999976532 23
Q ss_pred cEEEEEEeCCCCCceeEEe--------------ccCCccceeEEEEEEEEe-ecCCCCC-CCCC-CCHHHHHHHHHHHHH
Q 019753 240 EAIFAVHVSHEHPTGVIGS--------------RPGPLLAGCGFFHAVISG-KKGGAAN-PHRS-VDPVLAASAAVISLQ 302 (336)
Q Consensus 240 d~~i~~ept~~~~~G~i~~--------------~~G~~~aG~~~~~I~v~G-~~aHas~-P~~G-~NAI~~a~~~i~~L~ 302 (336)
++++..++... +.+.+ +.....+|..|++|+++| +++|++. |+.| .||+..++++|.+++
T Consensus 157 ~~~~~~d~~~~---~~~~~g~~~~~~~~~~~e~~~e~~~kG~~~~~i~~~G~~~~Hsg~~p~~~r~nAi~~aa~~i~~l~ 233 (477)
T TIGR01893 157 KILINIDSEEE---GEFIVGCAGGRNVDITFPVKYEKFTKNEEGYQISLKGLKGGHSGADIHKGRANANKLMARVLNELK 233 (477)
T ss_pred cEEEEecCCCC---CeEEEECCCCeeEEEEEEEEEEecCCCceEEEEEEeCcCCCcCccccCCCCcCHHHHHHHHHHhhh
Confidence 55555443211 11100 000012367899999999 9999986 9999 499999999999998
Q ss_pred hhhhhccCCCCCceEEEEEEEecCCCc-CCCCC
Q 019753 303 GLVSREANPLDSQVSLSLWIITTHFAL-NPSFG 334 (336)
Q Consensus 303 ~l~~~~~~~~~~~tl~vg~I~gG~~~~-~p~~~ 334 (336)
++. .++++.+.||+..+ +|+.+
T Consensus 234 ~~~----------~~~v~~~~gg~~~N~ip~~~ 256 (477)
T TIGR01893 234 ENL----------NFRLSDIKGGSKRNAIPREA 256 (477)
T ss_pred hcC----------CeEEEEEeCCCcccccCCce
Confidence 752 26889999998764 88653
No 53
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=99.95 E-value=1.9e-26 Score=228.23 Aligned_cols=215 Identities=13% Similarity=0.151 Sum_probs=161.1
Q ss_pred HHHHHHHHHHhhcCCCC----------CccHHHHHHHHHHHHHhCCCeEEEecCCceEEEEecCC--CCCeEEEEeccCc
Q 019753 97 VDWLKSVRRTIHQNPEL----------AFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTG--GPPFVALRADMDA 164 (336)
Q Consensus 97 ~~~li~l~~~Lv~iPs~----------sg~E~~~~~~l~~~L~~~G~~v~~~~~~~nvia~i~g~--~~p~I~l~~H~Dt 164 (336)
.+++++++++|+++|+. |++|.++++||.++|+++|++++++ ...|+++++++. ++|+|+|+||+||
T Consensus 9 ~~~~~~~l~~l~~i~s~~~~~~~~~~~s~~e~~~~~~l~~~l~~~G~~~~~~-~~~n~~a~~~g~~~~~~~l~l~~H~Dt 87 (412)
T PRK12893 9 GERLWDSLMALARIGATPGGGVTRLALTDEDREARDLLAQWMEEAGLTVSVD-AIGNLFGRRAGTDPDAPPVLIGSHLDT 87 (412)
T ss_pred HHHHHHHHHHHhcccCCCCCcEEeccCCHHHHHHHHHHHHHHHHcCCEEEEc-CCCcEEEEeCCCCCCCCEEEEEecccC
Confidence 46789999999999853 5669999999999999999999874 346999999664 3689999999999
Q ss_pred ccCCCccCCccccccCCeeeecCCcHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc------chHHHHHHcCCC--
Q 019753 165 LPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG------NGAKRMMADGAL-- 236 (336)
Q Consensus 165 VP~~~~~~~pf~~~~~G~~~g~G~dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g------~Ga~~li~~g~~-- 236 (336)
||.+ |..++ +++++++|+|++.|++.+..++++|.|+|++|||.+ .|++++.+....
T Consensus 88 Vp~~------------g~~dg---k~gvaa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~~G~~~~~~~~~~~~ 152 (412)
T PRK12893 88 QPTG------------GRFDG---ALGVLAALEVVRTLNDAGIRTRRPIEVVSWTNEEGARFAPAMLGSGVFTGALPLDD 152 (412)
T ss_pred CCCC------------Ccccc---hhhHHHHHHHHHHHHHcCCCCCCCeEEEEEccccccccccccccHHHHhCcCChHH
Confidence 9963 22333 357889999999999887778999999999999985 277777643110
Q ss_pred -----------------------------CCCcEEEEEEeCCC------CCceeEEeccCCccceeEEEEEEEEeecCCC
Q 019753 237 -----------------------------EDVEAIFAVHVSHE------HPTGVIGSRPGPLLAGCGFFHAVISGKKGGA 281 (336)
Q Consensus 237 -----------------------------~~~d~~i~~ept~~------~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHa 281 (336)
.+.|..+..|...+ ...+.+... ..|..|++|+++|+++|+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~----~kG~~~~~i~v~G~~aHa 228 (412)
T PRK12893 153 ALARRDADGITLGEALARIGYRGTARVGRRAVDAYLELHIEQGPVLEAEGLPIGVVTG----IQGIRWLEVTVEGQAAHA 228 (412)
T ss_pred HHhccCCCCCCHHHHHHHcCCCcccccccCCccEEEEEEeccCHHHHHCCCcEEEEee----ecccEEEEEEEEEECCCc
Confidence 01234444443211 011223221 237899999999999999
Q ss_pred CC-CC-CCCCHHHHHHHHHHHHHhhhhhccCCCCCceEEEEEEEec-CCC-cCCCCC
Q 019753 282 AN-PH-RSVDPVLAASAAVISLQGLVSREANPLDSQVSLSLWIITT-HFA-LNPSFG 334 (336)
Q Consensus 282 s~-P~-~G~NAI~~a~~~i~~L~~l~~~~~~~~~~~tl~vg~I~gG-~~~-~~p~~~ 334 (336)
+. |+ .|+|||.++++++.+|+++..+. . ...++|+|.|++| +.. ++|+.+
T Consensus 229 s~~p~~~G~NAI~~a~~~i~~l~~~~~~~-~--~~~~~~vg~i~ggg~~~NvVP~~a 282 (412)
T PRK12893 229 GTTPMAMRRDALVAAARIILAVERIAAAL-A--PDGVATVGRLRVEPNSRNVIPGKV 282 (412)
T ss_pred CCCcchhccCHHHHHHHHHHHHHHHHHhc-C--CCceEEEEEEEeeCCCceEECCee
Confidence 96 85 89999999999999999875432 1 2579999999985 554 588864
No 54
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=99.95 E-value=2.2e-26 Score=228.16 Aligned_cols=212 Identities=13% Similarity=0.161 Sum_probs=159.4
Q ss_pred HHHHHHHHHhhcC----------CCCCccHHHHHHHHHHHHHhCCCeEEEecCCceEEEEecCC--CCCeEEEEeccCcc
Q 019753 98 DWLKSVRRTIHQN----------PELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTG--GPPFVALRADMDAL 165 (336)
Q Consensus 98 ~~li~l~~~Lv~i----------Ps~sg~E~~~~~~l~~~L~~~G~~v~~~~~~~nvia~i~g~--~~p~I~l~~H~DtV 165 (336)
+.+++++++|+++ ||+|++|.++++||.++|+++|+++++. .+.||++++++. ++|.|+|+||||||
T Consensus 7 ~~~~~~~~~l~~~~~~~~~g~~~~s~s~~e~~~a~~l~~~l~~~g~~~~~~-~~~nl~a~~~g~~~~~~~l~l~gH~DtV 85 (413)
T PRK09290 7 ERLWARLDELAKIGATPDGGVTRLALSPEDLQARDLFAEWMEAAGLTVRVD-AVGNLFGRLEGRDPDAPAVLTGSHLDTV 85 (413)
T ss_pred HHHHHHHHHHhcccCCCCCceeeccCCHHHHHHHHHHHHHHHHcCCEEEEc-CCCcEEEEecCCCCCCCEEEEecCccCC
Confidence 5566666666666 4889999999999999999999998874 357999999764 36899999999999
Q ss_pred cCCCccCCccccccCCeeeecCCcHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc------chHHHHHHc------
Q 019753 166 PIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG------NGAKRMMAD------ 233 (336)
Q Consensus 166 P~~~~~~~pf~~~~~G~~~g~G~dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g------~Ga~~li~~------ 233 (336)
|++ |.. ++++++|++++|++.|++.+..++++|.|+|++|||.+ .|++.+++.
T Consensus 86 p~~------------g~~---d~k~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~G~~~~~~~~~~~~~ 150 (413)
T PRK09290 86 PNG------------GRF---DGPLGVLAGLEAVRTLNERGIRPRRPIEVVAFTNEEGSRFGPAMLGSRVFTGALTPEDA 150 (413)
T ss_pred CCC------------CCc---CCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCccccccCccccHHHHHcccCHHHH
Confidence 973 211 22468899999999999887778899999999999984 377776532
Q ss_pred ------------------CCCCCCcEEEEE--EeCCCC-----------------CceeEEeccCCccceeEEEEEEEEe
Q 019753 234 ------------------GALEDVEAIFAV--HVSHEH-----------------PTGVIGSRPGPLLAGCGFFHAVISG 276 (336)
Q Consensus 234 ------------------g~~~~~d~~i~~--ept~~~-----------------~~G~i~~~~G~~~aG~~~~~I~v~G 276 (336)
| + +.|+++++ ||+... ..+.+... ..|..|++|+++|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~-~-~~d~~i~~~~ept~~~~~~~~~~~~~~~~e~~~~~~~i~~~----~kG~~~~~i~v~G 224 (413)
T PRK09290 151 LALRDADGVSFAEALAAIG-Y-DGDEAVGAARARRDIKAFVELHIEQGPVLEAEGLPIGVVTG----IVGQRRYRVTFTG 224 (413)
T ss_pred HhccCCCCCCHHHHHHHcC-C-ChhhccccccCCCCccEEEEEEeccCHHHHHCCCcEEEEee----eeccEEEEEEEEE
Confidence 2 2 34666655 454210 01223221 2378999999999
Q ss_pred ecCCCC-CC-CCCCCHHHHHHHHHHHHHhhhhhccCCCCCceEEEEEEEec-CCC-cCCCCC
Q 019753 277 KKGGAA-NP-HRSVDPVLAASAAVISLQGLVSREANPLDSQVSLSLWIITT-HFA-LNPSFG 334 (336)
Q Consensus 277 ~~aHas-~P-~~G~NAI~~a~~~i~~L~~l~~~~~~~~~~~tl~vg~I~gG-~~~-~~p~~~ 334 (336)
+++|++ .| +.|+|||..+++++.+|+++..+.. .+.+++++.|++| +.. ++|+.+
T Consensus 225 k~aHas~~P~~~g~NAI~~~~~~i~~l~~l~~~~~---~~~~~~~g~i~~g~~~~NvIP~~a 283 (413)
T PRK09290 225 EANHAGTTPMALRRDALLAAAEIILAVERIAAAHG---PDLVATVGRLEVKPNSVNVIPGEV 283 (413)
T ss_pred ECCCCCCCCchhccCHHHHHHHHHHHHHHHHHhcC---CCeEEEEEEEEEcCCCCeEECCEE
Confidence 999998 58 5899999999999999988753321 2468999999975 444 488754
No 55
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=99.94 E-value=2.7e-25 Score=220.59 Aligned_cols=200 Identities=16% Similarity=0.132 Sum_probs=151.9
Q ss_pred CCCCccHHHHHHHHHHHHHhCCCeEEEecCCceEEEEecCC--CCCeEEEEeccCcccCCCccCCccccccCCeeeecCC
Q 019753 111 PELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTG--GPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGH 188 (336)
Q Consensus 111 Ps~sg~E~~~~~~l~~~L~~~G~~v~~~~~~~nvia~i~g~--~~p~I~l~~H~DtVP~~~~~~~pf~~~~~G~~~g~G~ 188 (336)
++.+++|.++++||.++|+++|++++++. ..|+++++++. ++|.|+|+|||||||.+ |. .++
T Consensus 33 ~~~~~~e~~~~~~l~~~l~~~G~~v~~~~-~gNl~a~~~g~~~~~~~l~~~~H~DtVp~g------------g~---~D~ 96 (414)
T PRK12891 33 LALTDGDREARDLFVAWARDAGCTVRVDA-MGNLFARRAGRDPDAAPVMTGSHADSQPTG------------GR---YDG 96 (414)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEECC-CCCEEEEecCCCCCCCeEEEEecccCCCCC------------cc---ccc
Confidence 46688999999999999999999998864 46999999764 35899999999999963 21 245
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc------chHHH------------------------HHHcCCCC-
Q 019753 189 DAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG------NGAKR------------------------MMADGALE- 237 (336)
Q Consensus 189 dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g------~Ga~~------------------------li~~g~~~- 237 (336)
++++++++.|++.|++.+..++++|.|++++|||.+ .|++. |.+.|+..
T Consensus 97 k~Gv~a~l~a~~~l~~~~~~~~~~i~v~~~~dEE~~~f~~~~~Gs~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 176 (414)
T PRK12891 97 IYGVLGGLEVVRALNDAGIETERPVDVVIWTNEEGSRFAPSMVGSGVFFGVYPLEYLLSRRDDTGRTLGEHLARIGYAGA 176 (414)
T ss_pred hhhHHHHHHHHHHHHHcCCCCCCCeEEEEecccccCcCCcccccHHHHhCCCCHHHHHhccCCCCCCHHHHHHHCCCCcc
Confidence 678999999999999988889999999999999985 26653 34444421
Q ss_pred ------CCcEEEEEEeCCC-------CCceeEEeccCCccceeEEEEEEEEeecCCCCC-CC-CCCCHHHHHHHHHHHHH
Q 019753 238 ------DVEAIFAVHVSHE-------HPTGVIGSRPGPLLAGCGFFHAVISGKKGGAAN-PH-RSVDPVLAASAAVISLQ 302 (336)
Q Consensus 238 ------~~d~~i~~ept~~-------~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~-P~-~G~NAI~~a~~~i~~L~ 302 (336)
+.++.+..|+... .+.+.+..+ .|..|++|+++|+++|++. |+ .|+|||..++++|.+|+
T Consensus 177 ~~~~~~~~~~~~e~h~e~g~vle~~~~~~~iv~~~-----kG~~~~~v~v~Gk~aHa~~~P~~~g~nAI~~aa~~i~~l~ 251 (414)
T PRK12891 177 EPVGGYPVHAAYELHIEQGAILERAGKTIGVVTAG-----QGQRWYEVTLTGVDAHAGTTPMAFRRDALVGAARMIAFLD 251 (414)
T ss_pred cccccCCCCEEEEEEeCCCHHHHHCCCcEEEEeec-----cCcEEEEEEEEeECCCCCCCCcccccCHHHHHHHHHHHHH
Confidence 1234455554321 112233223 3688999999999999985 87 58999999999999999
Q ss_pred hhhhhccCCCCCceEEEEEEEec-CC-CcCCCCC
Q 019753 303 GLVSREANPLDSQVSLSLWIITT-HF-ALNPSFG 334 (336)
Q Consensus 303 ~l~~~~~~~~~~~tl~vg~I~gG-~~-~~~p~~~ 334 (336)
++..+. ..+.++|+|.|+|| .. +++|+.+
T Consensus 252 ~~~~~~---~~~~t~~vg~I~gG~~~~NvVP~~~ 282 (414)
T PRK12891 252 ALGRRD---APDARATVGMIDARPNSRNTVPGEC 282 (414)
T ss_pred HHHHhc---CCCeEEEEEEEEeeCCCcceECCeE
Confidence 875421 13569999999997 45 4588754
No 56
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=99.94 E-value=1.6e-24 Score=214.85 Aligned_cols=203 Identities=14% Similarity=0.074 Sum_probs=150.4
Q ss_pred hhcCCCCCccHHHHHHHHHHHHHhCCCeEEEecCCceEEEEecCC--CCCeEEEEeccCcccCCCccCCccccccCCeee
Q 019753 107 IHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTG--GPPFVALRADMDALPIQEAVEWEYKSKVAGKMH 184 (336)
Q Consensus 107 Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v~~~~~~~nvia~i~g~--~~p~I~l~~H~DtVP~~~~~~~pf~~~~~G~~~ 184 (336)
.+++||.+++|.++++||.++|+++|+++++.. ..|+++++++. ++|.|+|+|||||||.+ |.
T Consensus 27 ~~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~~-~~nlia~~~g~~~~~~~l~~~~H~DtVp~~------------g~-- 91 (414)
T PRK12890 27 GWTRLALSDEERAARALLAAWMRAAGLEVRRDA-AGNLFGRLPGRDPDLPPLMTGSHLDTVPNG------------GR-- 91 (414)
T ss_pred ceeeccCCHHHHHHHHHHHHHHHHCCCEEEEcC-CCcEEEEeCCCCCCCCEEEEeCcccCCCCC------------CC--
Confidence 456678899999999999999999999998853 56999999764 46899999999999963 22
Q ss_pred ecCCcHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc------chHHHHHHc------------------------C
Q 019753 185 ACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG------NGAKRMMAD------------------------G 234 (336)
Q Consensus 185 g~G~dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g------~Ga~~li~~------------------------g 234 (336)
.+++++++++|.|++.|++.+..++++|.|++++|||.+ .|++++.+. |
T Consensus 92 -~D~~~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 170 (414)
T PRK12890 92 -YDGILGVLAGLEVVAALREAGIRPPHPLEVIAFTNEEGVRFGPSMIGSRALAGTLDVEAVLATRDDDGTTLAEALRRIG 170 (414)
T ss_pred -cCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEecccccccCCccccHHHHHcccChHHHHhccCCCCCCHHHHHHHcC
Confidence 233468899999999999887778999999999999974 366555432 2
Q ss_pred CCCCCcEEEE--EEeCCC-----------------CCceeEEeccCCccceeEEEEEEEEeecCCCCC-CCC-CCCHHHH
Q 019753 235 ALEDVEAIFA--VHVSHE-----------------HPTGVIGSRPGPLLAGCGFFHAVISGKKGGAAN-PHR-SVDPVLA 293 (336)
Q Consensus 235 ~~~~~d~~i~--~ept~~-----------------~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~-P~~-G~NAI~~ 293 (336)
. ..|++++ .||+.. ...+.+... ..|..|++|+++|+++|++. |+. |+|||..
T Consensus 171 ~--~~~~~~~~~~ep~~~~~~~~~h~~~g~~~~~~~~~~~i~~~----~kG~~~~~i~v~Gk~aHas~~P~~~g~nAI~~ 244 (414)
T PRK12890 171 G--DPDALPGALRPPGAVAAFLELHIEQGPVLEAEGLPIGVVTA----IQGIRRQAVTVEGEANHAGTTPMDLRRDALVA 244 (414)
T ss_pred C--ChhhccccccCCCCccEEEEEeeCcCHHHHhCCCceEEEEe----ecCcEEEEEEEEEECCCCCcCChhhccCHHHH
Confidence 1 1233222 344210 011222221 22688999999999999986 865 5899999
Q ss_pred HHHHHHHHHhhhhhccCCCCCceEEEEEEEec-CCC-cCCCCC
Q 019753 294 ASAAVISLQGLVSREANPLDSQVSLSLWIITT-HFA-LNPSFG 334 (336)
Q Consensus 294 a~~~i~~L~~l~~~~~~~~~~~tl~vg~I~gG-~~~-~~p~~~ 334 (336)
+++++.+|+++..+.. .+.++++|.|++| +.. ++|+.+
T Consensus 245 ~~~~i~~l~~~~~~~~---~~~~~~~g~i~~gg~~~NvIP~~a 284 (414)
T PRK12890 245 AAELVTAMERRARALL---HDLVATVGRLDVEPNAINVVPGRV 284 (414)
T ss_pred HHHHHHHHHHHHHhcC---CCeEEEEEEEEECCCCceEECCeE
Confidence 9999999998754321 4678999999975 444 588764
No 57
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.92 E-value=1.6e-23 Score=202.20 Aligned_cols=231 Identities=15% Similarity=0.084 Sum_probs=168.8
Q ss_pred HHHHHHHHHhhcCCCCCc--cHH-HHHHHHHHHHHhCCCeEEE---ecCCceEEEEecCC--CCCeEEEEeccCcccCC-
Q 019753 98 DWLKSVRRTIHQNPELAF--QEF-ETSRLLRAELDRMEIGYKY---PLAKTGIRAWVGTG--GPPFVALRADMDALPIQ- 168 (336)
Q Consensus 98 ~~li~l~~~Lv~iPs~sg--~E~-~~~~~l~~~L~~~G~~v~~---~~~~~nvia~i~g~--~~p~I~l~~H~DtVP~~- 168 (336)
...+..+|...++|+.-. +-. +.++|+.++.+.+|..++. .+++.+++.+|.|. +-+.|+|++|+||||+.
T Consensus 25 ~~~v~~f~eylRi~Tv~p~~dy~~a~~~Fl~~~a~~l~l~~~~i~~~p~~~~~l~T~~GS~P~L~silL~SH~DVVP~f~ 104 (420)
T KOG2275|consen 25 NISVTRFREYLRIPTVQPNPDYTIACADFLKKYAKSLGLTVQKIESEPGKYVLLYTWLGSDPELPSILLNSHTDVVPVFR 104 (420)
T ss_pred chHHHHHHHHhhccccccCCCccHHHHHHHHHHHHhcCCceeEEEecCceeEEEEEeeCCCCCccceeeeccccccCCCc
Confidence 344555666667776522 222 6799999999999998754 24567888888876 45899999999999985
Q ss_pred -CccCCccccc--cCCeeeecCC-c--HHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc--chHHHHHHcCCCCCCc
Q 019753 169 -EAVEWEYKSK--VAGKMHACGH-D--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG--NGAKRMMADGALEDVE 240 (336)
Q Consensus 169 -~~~~~pf~~~--~~G~~~g~G~-d--g~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g--~Ga~~li~~g~~~~~d 240 (336)
.|+.+||+.. .+|.+||||+ | ...+++|.|++.|+..+.+++++|.+.|.+|||.+ .|++.+.+...+++..
T Consensus 105 e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~~~g~kp~Rti~lsfvpDEEi~G~~Gm~~fa~~~~~~~l~ 184 (420)
T KOG2275|consen 105 EKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLKASGFKPKRTIHLSFVPDEEIGGHIGMKEFAKTEEFKKLN 184 (420)
T ss_pred ccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHHhcCCCcCceEEEEecCchhccCcchHHHHhhhhhhcccc
Confidence 3788899975 5799999996 3 67788999999999999999999999999999988 4999988754455444
Q ss_pred EE-EEEEeCCC-CCceeEEeccCCccceeEEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhhc---------c
Q 019753 241 AI-FAVHVSHE-HPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSRE---------A 309 (336)
Q Consensus 241 ~~-i~~ept~~-~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~P~~G~NAI~~a~~~i~~L~~l~~~~---------~ 309 (336)
.. +..|+... ...-.+.. ...|..|++|+++|.++|+|.|. -..|+.++.++|..+.+...+. .
T Consensus 185 ~~filDEG~~se~d~~~vfy----aEkg~w~~~v~~~G~~GHss~~~-~nTa~~~l~klv~~~~~fr~~q~~~l~~~p~~ 259 (420)
T KOG2275|consen 185 LGFILDEGGATENDFATVFY----AEKGPWWLKVTANGTPGHSSYPP-PNTAIEKLEKLVESLEEFREKQVDLLASGPKL 259 (420)
T ss_pred eeEEecCCCCCcccceeEEE----EeeceeEEEEEecCCCCCCCCCC-CccHHHHHHHHHHHHHHhHHHHHHHhhcCCce
Confidence 43 44454211 11111221 12268999999999999999942 1457777888888877654211 1
Q ss_pred CCCCCceEEEEEEEecCCCc-CCCC
Q 019753 310 NPLDSQVSLSLWIITTHFAL-NPSF 333 (336)
Q Consensus 310 ~~~~~~tl~vg~I~gG~~~~-~p~~ 333 (336)
...+.+|+|++.|+||++.+ +|+.
T Consensus 260 ~~~~vtT~Nv~~i~GGv~~N~~P~~ 284 (420)
T KOG2275|consen 260 ALGDVTTINVGIINGGVQSNVLPET 284 (420)
T ss_pred eccceeEEeeeeeecccccCcCchh
Confidence 12457899999999999865 6653
No 58
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=99.92 E-value=1.1e-23 Score=208.19 Aligned_cols=200 Identities=18% Similarity=0.221 Sum_probs=147.9
Q ss_pred CCCCccHHHHHHHHHHHHHhCCCeEEEecCCceEEEEecCC--CCCeEEEEeccCcccCCCccCCccccccCCeeeecCC
Q 019753 111 PELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTG--GPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGH 188 (336)
Q Consensus 111 Ps~sg~E~~~~~~l~~~L~~~G~~v~~~~~~~nvia~i~g~--~~p~I~l~~H~DtVP~~~~~~~pf~~~~~G~~~g~G~ 188 (336)
.+++++|.++++||.++|+++|++++++. ..||++++++. ++|.|+|+||+||||.+ |+.+|+
T Consensus 24 ~~~~~~e~~~~~~l~~~~~~~G~~~~~~~-~~nl~a~~~g~~~~~~~l~~~~H~DtV~~g------------g~~dg~-- 88 (401)
T TIGR01879 24 LALSPEDREAQDLFKKRMRAAGLEVRFDE-VGNLIGRKEGTEPPLEVVLSGSHIDTVVNG------------GNFDGQ-- 88 (401)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEec-CCcEEEEecCCCCCCCEEEEecccccCCCC------------CccCCH--
Confidence 45688999999999999999999998754 46999999865 35899999999999963 333333
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCC-----c-chHHHHHHcC------CC---------------C----
Q 019753 189 DAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEA-----G-NGAKRMMADG------AL---------------E---- 237 (336)
Q Consensus 189 dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~-----g-~Ga~~li~~g------~~---------------~---- 237 (336)
.+++++|.+++.|++.+..++++|.|++++|||. + .|++.+.... .+ .
T Consensus 89 -~gvaa~l~a~~~l~~~g~~~~~~i~~~~~~dEE~~~f~~~~~Gs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~ 167 (401)
T TIGR01879 89 -LGVLAGIEVVDALKEAYVVPLHPIEVVAFTEEEGSRFPYGMWGSRNMVGLANPEDVRNICDAKGISFAEAMKACGPDLP 167 (401)
T ss_pred -HHHHHHHHHHHHHHHcCCCCCCCeEEEEEeCCcCcCcccccccHHHHhcccchhHHHhCcCCCCCCHHHHHHHcCCCcc
Confidence 3678889999999998888999999999999997 3 4887775421 00 0
Q ss_pred --------CCcEEEEEEeCCC-------CCceeEEeccCCccceeEEEEEEEEeecCCCCC-CC-CCCCHHHHHHHHHHH
Q 019753 238 --------DVEAIFAVHVSHE-------HPTGVIGSRPGPLLAGCGFFHAVISGKKGGAAN-PH-RSVDPVLAASAAVIS 300 (336)
Q Consensus 238 --------~~d~~i~~ept~~-------~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~-P~-~G~NAI~~a~~~i~~ 300 (336)
++++.+..|..-+ .+.+.+..+ .|..|++|+++|+++|++. |+ .|+|||..+++++.+
T Consensus 168 ~~~~~~~~~~~~~~e~Hieqg~~l~~~g~~~~v~~~~-----~G~~~~~i~v~G~~aHa~~~p~~~g~nAi~~aa~~i~~ 242 (401)
T TIGR01879 168 NQPLRPRGDIKAYVELHIEQGPVLESNGQPIGVVNAI-----AGQRWYKVTLNGESNHAGTTPMSLRRDPLVAASRIIHQ 242 (401)
T ss_pred cccccccccccEEEEEEEcCCcChhhCCCeEEEEEEe-----cCcEEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHH
Confidence 1122333333210 112222222 3689999999999999986 64 579999999999999
Q ss_pred HHhhhhhccCCCCCceEEEEEEEec-CC-CcCCCCC
Q 019753 301 LQGLVSREANPLDSQVSLSLWIITT-HF-ALNPSFG 334 (336)
Q Consensus 301 L~~l~~~~~~~~~~~tl~vg~I~gG-~~-~~~p~~~ 334 (336)
|+++..+. ..+.+.++|.|++| .. +++|+.+
T Consensus 243 l~~l~~~~---~~~~~~~vg~i~~g~~~~NvVP~~a 275 (401)
T TIGR01879 243 VEEKAKRM---GDPTVGTVGKVEARPNGVNVIPGKV 275 (401)
T ss_pred HHHHHHhc---CCCeEEEEEEEEecCCceEEECCEE
Confidence 99875432 12457899999986 43 4588753
No 59
>PRK08554 peptidase; Reviewed
Probab=99.91 E-value=2.5e-23 Score=208.31 Aligned_cols=200 Identities=21% Similarity=0.179 Sum_probs=148.8
Q ss_pred HHHHHHHHhhcCCCCCcc------HHHHHHHHHHHHHhCCCeEEEec--CCceEEEEecCCCCCeEEEEeccCcccCC--
Q 019753 99 WLKSVRRTIHQNPELAFQ------EFETSRLLRAELDRMEIGYKYPL--AKTGIRAWVGTGGPPFVALRADMDALPIQ-- 168 (336)
Q Consensus 99 ~li~l~~~Lv~iPs~sg~------E~~~~~~l~~~L~~~G~~v~~~~--~~~nvia~i~g~~~p~I~l~~H~DtVP~~-- 168 (336)
++++++++|+++||.++. |.++++|+.++|+++|+++++.. ++.|+++.++.+ .+.|+|+|||||||++
T Consensus 2 ~~~~~l~~LV~i~S~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~l~~~~~~~-~~~l~l~gH~DtVp~~~~ 80 (438)
T PRK08554 2 DVLELLSSLVSFETVNDPSKGIKPSKECPKFIKDTLESWGIESELIEKDGYYAVYGEIGEG-KPKLLFMAHFDVVPVNPE 80 (438)
T ss_pred hHHHHHHHHhCCCCCCCcccCcchHHHHHHHHHHHHHHCCCeEEEEecCCceEEEEEeCCC-CCEEEEEeccccCCCCcc
Confidence 468899999999997643 68899999999999999987532 346899998543 5789999999999986
Q ss_pred CccCCccccc-cCCeeeecC---CcHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCcc-hHHHHHHcC--CCCCCcE
Q 019753 169 EAVEWEYKSK-VAGKMHACG---HDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN-GAKRMMADG--ALEDVEA 241 (336)
Q Consensus 169 ~~~~~pf~~~-~~G~~~g~G---~dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g~-Ga~~li~~g--~~~~~d~ 241 (336)
.|+.+||++. .+|++|||| ||++++++|.|++.|++. .++++|.|+|++|||.|+ +..++++.. ....+|+
T Consensus 81 ~w~~~Pf~~~~~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~--~~~~~i~l~~~~dEE~g~~~~~~~~~~~~~~~~~~~~ 158 (438)
T PRK08554 81 EWNTEPFKLTVKGDKAYGRGSADDKGNVASVMLALKELSKE--PLNGKVIFAFTGDEEIGGAMAMHIAEKLREEGKLPKY 158 (438)
T ss_pred ccccCCceeEEECCEEEECCcccchHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccCccccHHHHHHHHhcCCCCCE
Confidence 4788999975 578999999 469999999999999874 367899999999999874 444655431 1124799
Q ss_pred EEEEEeCCCCCceeEEeccCCc-----------ccee---EEEEEEEEeec-CCCCCCCCCCC--HHHHHHHHHHHHHh
Q 019753 242 IFAVHVSHEHPTGVIGSRPGPL-----------LAGC---GFFHAVISGKK-GGAANPHRSVD--PVLAASAAVISLQG 303 (336)
Q Consensus 242 ~i~~ept~~~~~G~i~~~~G~~-----------~aG~---~~~~I~v~G~~-aHas~P~~G~N--AI~~a~~~i~~L~~ 303 (336)
+|+.||+...+ .+..++|.. -.|. .++.++++|++ +|++.|..|+| |+..+.+++.++..
T Consensus 159 ~iv~Ept~~~~--~~~~~kg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Ha~~~~~g~~~~~i~~~~~~~~~~~~ 235 (438)
T PRK08554 159 MINADGIGMKP--IIRRRKGFGVTIRVPSEKVKVKGKLREQTFEIRTPVVETRHAAYFLPGVDTHPLIAASHFLRESNV 235 (438)
T ss_pred EEEeCCCCCcc--hhhcCCceEEEEEecccccccccceeeeeeceeecccCccccccccCCcCchHHHHHHHHHhhcCc
Confidence 99999975321 111121110 0122 35666677775 99998877765 58888888777754
No 60
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=99.90 E-value=6.3e-22 Score=204.83 Aligned_cols=216 Identities=15% Similarity=0.147 Sum_probs=163.7
Q ss_pred hHHHHHHHHHHhhcCCC-------------CCccHHHHHHHHHHHHHhCCCe-EEEecCCceEEEEecCC--CCCeEEEE
Q 019753 96 TVDWLKSVRRTIHQNPE-------------LAFQEFETSRLLRAELDRMEIG-YKYPLAKTGIRAWVGTG--GPPFVALR 159 (336)
Q Consensus 96 ~~~~li~l~~~Lv~iPs-------------~sg~E~~~~~~l~~~L~~~G~~-v~~~~~~~nvia~i~g~--~~p~I~l~ 159 (336)
+.+.+.+.+..|.+++. +|.++.++++|+.+||+++|++ ++++.. .||+++++|. +.|.|++.
T Consensus 179 ~~~r~~~~l~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~~~~~~~~~Gl~~v~~D~~-gNv~~~~~g~~~~~p~v~~g 257 (591)
T PRK13799 179 IGADVMDWAEDIAAHSDPGYADEGALTCTYLSDAHRACANQISDWMRDAGFDEVEIDAV-GNVVGRYKAADDDAKTLITG 257 (591)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCCeEeECCC-CCEEEEcCCCCCCCCeEEEe
Confidence 34556677777777752 2446789999999999999998 988754 6999999774 46899999
Q ss_pred eccCcccCCCccCCccccccCCeeeecCCcHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc------chHHHHH--
Q 019753 160 ADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG------NGAKRMM-- 231 (336)
Q Consensus 160 ~H~DtVP~~~~~~~pf~~~~~G~~~g~G~dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g------~Ga~~li-- 231 (336)
+|+||||.+ |+.+|+ .+++++|.+++.|++.+..++++|.|+++.|||+. .|++.+.
T Consensus 258 SHlDTV~~g------------G~~DG~---~Gv~a~l~~~~~l~~~~~~~~~~i~vi~~~~EEg~rF~~~~~GS~~~~G~ 322 (591)
T PRK13799 258 SHYDTVRNG------------GKYDGR---EGIFLAIACVKELHEQGERLPFHFEVIAFAEEEGQRFKATFLGSGALIGD 322 (591)
T ss_pred ccccccCCC------------CccccH---HHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCccCCCccccchHHHhCC
Confidence 999999953 666665 57888999999999999999999999999999972 3666664
Q ss_pred ------H----cCC---------------C-------CCCcEEEEEEeCCC-------CCceeEEeccCCccceeEEEEE
Q 019753 232 ------A----DGA---------------L-------EDVEAIFAVHVSHE-------HPTGVIGSRPGPLLAGCGFFHA 272 (336)
Q Consensus 232 ------~----~g~---------------~-------~~~d~~i~~ept~~-------~~~G~i~~~~G~~~aG~~~~~I 272 (336)
+ .|. . .++++.+..|+.-+ .+.|.+... +|..|++|
T Consensus 323 ~~~~~~~~~d~~G~~~~~~l~~~g~~~~~~~~~~~~~~~~~a~~ElHIEQgp~Le~~~~~igvV~g~-----~G~~~~~I 397 (591)
T PRK13799 323 FNMELLDIKDADGISLREAIQHAGHCIDAIPKIARDPADVLGFIEVHIEQGPVLLELDIPLGIVTSI-----AGSARYIC 397 (591)
T ss_pred ChHHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCCccEEEEEEeCCCHHHHHCCCcEEEEeee-----ccceEEEE
Confidence 1 121 0 13557777877532 344555433 36889999
Q ss_pred EEEeecCCCCC-CC-CCCCHHHHHHHHHHHHHhhhhhccCCCCCceEEEEEEEec--CCCcCCCCC
Q 019753 273 VISGKKGGAAN-PH-RSVDPVLAASAAVISLQGLVSREANPLDSQVSLSLWIITT--HFALNPSFG 334 (336)
Q Consensus 273 ~v~G~~aHas~-P~-~G~NAI~~a~~~i~~L~~l~~~~~~~~~~~tl~vg~I~gG--~~~~~p~~~ 334 (336)
+++|+++|++. |+ .+.||+..+++++..++++..+. +....++|||.|+++ ..+++|+.+
T Consensus 398 tv~GkaaHag~~Pm~~r~dAi~aaa~ii~~l~~~~~~~--~~~~~v~tVG~I~~~~ga~NvIP~~a 461 (591)
T PRK13799 398 EFIGMASHAGTTPMDMRKDAAAAAAEIALYIEKRAAQD--QHASLVATMGQLNVPSGSTNVIPGRC 461 (591)
T ss_pred EEEEECCCCCCCChhhchhHHHHHHHHHHHHHHHHHhc--CCCCcEEEEEEEEecCCCCceECCEE
Confidence 99999999997 65 58999999999999999875432 223458999999964 334588753
No 61
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=99.90 E-value=6.6e-22 Score=196.18 Aligned_cols=199 Identities=14% Similarity=0.107 Sum_probs=150.7
Q ss_pred CCCccHHHHHHHHHHHHHhCCCeEEEecCCceEEEEecCC--CCCeEEEEeccCcccCCCccCCccccccCCeeeecCCc
Q 019753 112 ELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTG--GPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHD 189 (336)
Q Consensus 112 s~sg~E~~~~~~l~~~L~~~G~~v~~~~~~~nvia~i~g~--~~p~I~l~~H~DtVP~~~~~~~pf~~~~~G~~~g~G~d 189 (336)
.+|.++.++++|+.+||+++|++++.+.. .|++++++|. +.|.|++.+||||||.+ |+..| .
T Consensus 27 ~~s~~~~~a~~~~~~~~~~~Gl~v~~D~~-gN~~~~~~g~~~~~~~i~~gsHlDtv~~g------------G~~dg---~ 90 (406)
T TIGR03176 27 LYSPEWLAAQQQFKKRMAESGLETRFDDV-GNLYGRLVGTEFPEETILTGSHIDTVVNG------------GNLDG---Q 90 (406)
T ss_pred eCCHHHHHHHHHHHHHHHHcCCEEEEcCC-CcEEEEecCCCCCCCeEEEeccccCCCCC------------CccCc---h
Confidence 45778999999999999999999988755 5999999875 45899999999999953 22221 1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc------chHHHHHH------------------------cCC----
Q 019753 190 AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG------NGAKRMMA------------------------DGA---- 235 (336)
Q Consensus 190 g~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g------~Ga~~li~------------------------~g~---- 235 (336)
.++++.|.+++.|++.+..++++|.++++.+||.+ .|++.+.. .|+
T Consensus 91 ~Gv~~~le~~~~l~~~~~~~~~~i~vi~~~~EEg~rf~~~~~Gs~~~~g~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~ 170 (406)
T TIGR03176 91 FGALAAWLAVDYLKEKYGAPLRTVEVLSMAEEEGSRFPYVFWGSKNIFGLAKPEDVRTIEDAKGIKFVDAMHACGFDLRK 170 (406)
T ss_pred hhHHHHHHHHHHHHHcCCCCCCCeEEEEeccccCccCCcccccHHHHhCCCCHHHHHhCcCCCCCCHHHHHHHcCCCccc
Confidence 46788899999999998899999999999999985 26666642 011
Q ss_pred ----CCCCcEEEEEEeCC-------CCCceeEEeccCCccceeEEEEEEEEeecCCCCCCCC--CCCHHHHHHHHHHHHH
Q 019753 236 ----LEDVEAIFAVHVSH-------EHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAANPHR--SVDPVLAASAAVISLQ 302 (336)
Q Consensus 236 ----~~~~d~~i~~ept~-------~~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~P~~--G~NAI~~a~~~i~~L~ 302 (336)
..++++.+..|..- +.+.|.+...+ |..+++|+++|+++|++.|.. +.||+.++++++.+|.
T Consensus 171 ~~~~~~~~~~~~elHieqG~~Le~~g~~igiv~~~~-----G~~~~~v~v~GkaaHag~~p~~~r~dAi~aaa~~i~~l~ 245 (406)
T TIGR03176 171 APTVRDDIKAFVELHIEQGCVLESEGQSIGVVNAIV-----GQRRYTVNLKGEANHAGTTPMSYRRDTVYAFSRICTQSI 245 (406)
T ss_pred ccccccccceEEEEEECCCcchHHCCCeEEEEeecc-----cceEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHH
Confidence 11356778888742 12334443332 688999999999999998443 4899999999999998
Q ss_pred hhhhhccCCCCCceEEEEEEEe-cCCC-cCCCCC
Q 019753 303 GLVSREANPLDSQVSLSLWIIT-THFA-LNPSFG 334 (336)
Q Consensus 303 ~l~~~~~~~~~~~tl~vg~I~g-G~~~-~~p~~~ 334 (336)
++..+ ..++.++|+|.|++ |+.. ++|+.+
T Consensus 246 ~~~~~---~~~~~~~tvG~I~~gg~~~NvIP~~a 276 (406)
T TIGR03176 246 ERAKE---IGDPLVLTFGKVEPVPNTVNVVPGET 276 (406)
T ss_pred HHHHh---cCCCcEEEEEEEEEcCCceEEECCeE
Confidence 86432 12356999999995 4544 488753
No 62
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=99.89 E-value=2.5e-21 Score=200.43 Aligned_cols=214 Identities=10% Similarity=0.070 Sum_probs=158.2
Q ss_pred hHHHHHHHHHHhhcCCCC-------------CccHHHHHHHHHHHHHhCCC-eEEEecCCceEEEEecCC--CCCeEEEE
Q 019753 96 TVDWLKSVRRTIHQNPEL-------------AFQEFETSRLLRAELDRMEI-GYKYPLAKTGIRAWVGTG--GPPFVALR 159 (336)
Q Consensus 96 ~~~~li~l~~~Lv~iPs~-------------sg~E~~~~~~l~~~L~~~G~-~v~~~~~~~nvia~i~g~--~~p~I~l~ 159 (336)
+.+++.+.+..|-+++.+ |.++.++++|+.+||+++|+ +++.+.. .|++++++|. +.|.|++.
T Consensus 179 ~~~r~~~~~~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~l~~~~~~~Gl~~v~~D~~-GNl~~~~~g~~~~~~~v~~g 257 (591)
T PRK13590 179 LGNDVWDWAERLAAHSDPGYAEKGQLTVTYLTDAHRACAQQISHWMRDCGFDEVHIDAV-GNVVGRYKGSTPQAKRLLTG 257 (591)
T ss_pred HHHHHHHHHHHHhcccCCCCCCCCceeeeeCCHHHHHHHHHHHHHHHHcCCCeeeECCC-CCEEEEecCCCCCCCeEEEe
Confidence 345566667777777552 44578999999999999999 8887654 6999999874 34899999
Q ss_pred eccCcccCCCccCCccccccCCeeeecCCcHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc------chHHH----
Q 019753 160 ADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG------NGAKR---- 229 (336)
Q Consensus 160 ~H~DtVP~~~~~~~pf~~~~~G~~~g~G~dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g------~Ga~~---- 229 (336)
+||||||.+ |+.+|+ ++++++|.+++.|++.+..++.+|.|++++|||.+ .|++.
T Consensus 258 sHlDTV~~g------------G~~DG~---~Gv~a~lea~~~l~~~~~~~~~~i~vv~~~~EEg~rF~~~~~GS~~~~G~ 322 (591)
T PRK13590 258 SHYDTVRNG------------GKYDGR---LGIFVPMACVRELHRQGRRLPFGLEVVGFAEEEGQRYKATFLGSGALIGD 322 (591)
T ss_pred cccccCCCC------------CCcccH---HHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCccccCCccccchHHHhCC
Confidence 999999953 444443 57889999999999988888899999999999973 26664
Q ss_pred ----HHH---------------cCC----C-------CCCcEEEEEEeCCC-------CCceeEEeccCCccceeEEEEE
Q 019753 230 ----MMA---------------DGA----L-------EDVEAIFAVHVSHE-------HPTGVIGSRPGPLLAGCGFFHA 272 (336)
Q Consensus 230 ----li~---------------~g~----~-------~~~d~~i~~ept~~-------~~~G~i~~~~G~~~aG~~~~~I 272 (336)
+.+ .|+ + +.+++.+..|...+ .+.|.+...+ |..+++|
T Consensus 323 ~~~~~~~~~d~~g~~~~~al~~~g~~~~~~~~~~~~~~~~~a~~ElHiEqg~~Le~~~~~~gvV~~~~-----G~~~~~v 397 (591)
T PRK13590 323 FDPAWLDQKDADGITMREAMQHAGLCIDDIPKLRRDPARYLGFVEVHIEQGPVLNELDLPLGIVTSIN-----GSVRYVG 397 (591)
T ss_pred ChHHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCCccEEEEEEeCCCHHHHHCCCceEEEeeee-----ccEEEEE
Confidence 222 121 0 13456777777643 2344444333 6889999
Q ss_pred EEEeecCCCCC-CCC-CCCHHHHHHHHHHHHHhhhhhccCCCCCceEEEEEEE--ecCCCcCCCCC
Q 019753 273 VISGKKGGAAN-PHR-SVDPVLAASAAVISLQGLVSREANPLDSQVSLSLWII--TTHFALNPSFG 334 (336)
Q Consensus 273 ~v~G~~aHas~-P~~-G~NAI~~a~~~i~~L~~l~~~~~~~~~~~tl~vg~I~--gG~~~~~p~~~ 334 (336)
+++|+++|+|. |+. +.||+..+++++..++++... ....++|||.|+ ||..+++|+.+
T Consensus 398 ~v~GkaaHag~~P~~~r~dAi~aaa~~i~~l~~~~~~----~~~~v~tVG~i~~~Gg~~NVIP~~a 459 (591)
T PRK13590 398 EMIGMASHAGTTPMDRRRDAAAAVAELALYVEQRAAQ----DGDSVGTVGMLEVPGGSINVVPGRC 459 (591)
T ss_pred EEEeECCCCCCCCchhcccHHHHHHHHHHHHHHHHhc----CCCcEEEEEEEEECCCCCceECCEE
Confidence 99999999997 765 689999999999999886432 123578999997 45444588753
No 63
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.71 E-value=4.8e-16 Score=149.70 Aligned_cols=212 Identities=17% Similarity=0.144 Sum_probs=159.2
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHhhcCCCCCcc------HHHHHHHHHHHHHhCCCeEEEec-C----C--------ceE
Q 019753 84 SKEVMELARRPETVDWLKSVRRTIHQNPELAFQ------EFETSRLLRAELDRMEIGYKYPL-A----K--------TGI 144 (336)
Q Consensus 84 ~~~i~~~~~~~~~~~~li~l~~~Lv~iPs~sg~------E~~~~~~l~~~L~~~G~~v~~~~-~----~--------~nv 144 (336)
.+.++..+| ...++++..+++.++|+|.|.. =++.++|++++|+++|-+++..+ + . +-+
T Consensus 4 l~~~fq~id--~~~de~~~~L~e~v~iqsvs~dp~~r~~v~rm~~~~~~~l~~lG~~~~l~dlg~q~~~~g~~v~lPpvv 81 (473)
T KOG2276|consen 4 LTKVFQSID--LNKDEFINTLREAVAIQSVSADPTKRLEVRRMADWLRDYLTKLGAPLELVDLGYQSLPDGQIVPLPPVV 81 (473)
T ss_pred HHHHHHHhh--ccHHHHHHHHHHHhcccccccCccccHHHHHHHHHHHHHHHHhCCceeeeecccCCCCCCcccccChhh
Confidence 455888888 9999999999999999998764 36789999999999997766421 1 1 124
Q ss_pred EEEecCC-CCCeEEEEeccCcccCC---CccCCccccc-cCCeeeecCC-c--HHHHHHHHHHHHHHHcCCCCCceEEEE
Q 019753 145 RAWVGTG-GPPFVALRADMDALPIQ---EAVEWEYKSK-VAGKMHACGH-D--AHVAMLIGAAKILKSREHLLKGTVILI 216 (336)
Q Consensus 145 ia~i~g~-~~p~I~l~~H~DtVP~~---~~~~~pf~~~-~~G~~~g~G~-d--g~~A~~L~Aa~~L~~~~~~l~g~I~~i 216 (336)
.++++.. ..+++++.||+|++|.. .|+..||..+ .+|+++|||. | |.+++-+.|++++++.+..++-+|.|+
T Consensus 82 l~~~Gsdp~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~g~~lpvnv~f~ 161 (473)
T KOG2276|consen 82 LGVLGSDPSKKTVLVYGHLDVQPANLEDGWNTDPFTLTEDDGKLFGRGATDDKGPVLSWIHAVKALQQLGIDLPVNVVFV 161 (473)
T ss_pred hhcccCCCCcceEEEEeeeeeeecCCCCCCcCCCeEEEEECCEEeccCcCCCCccchHHHHHHHHHHHhCccccceEEEE
Confidence 4555444 35799999999999975 4678899865 6799999996 3 899999999999999998999999999
Q ss_pred EecCCCCcc-hHHHHHHc---CCCCCCcEEEEEEeCCCCCce--eEEeccCCccceeEEEEEEEEe--ecCCCCCCCCC-
Q 019753 217 FQPAEEAGN-GAKRMMAD---GALEDVEAIFAVHVSHEHPTG--VIGSRPGPLLAGCGFFHAVISG--KKGGAANPHRS- 287 (336)
Q Consensus 217 ft~dEE~g~-Ga~~li~~---g~~~~~d~~i~~ept~~~~~G--~i~~~~G~~~aG~~~~~I~v~G--~~aHas~P~~G- 287 (336)
|-..||.|+ |-..+++. .+++++|++.+.... ..| ..+...|.+ |...|.|++.| +-.||+.- .|
T Consensus 162 ~EgmEEsgS~~L~~l~~~~kD~~~~~vD~vciSdny---Wlg~kkPcltyGlR--G~~yf~i~v~g~~~DlHSGvf-GG~ 235 (473)
T KOG2276|consen 162 FEGMEESGSEGLDELIEKEKDKFFKDVDFVCISDNY---WLGTKKPCLTYGLR--GVIYFQIEVEGPSKDLHSGVF-GGV 235 (473)
T ss_pred EEechhccCccHHHHHHHHhhhhhccCCEEEeeCce---eccCCCcccccccc--cceeEEEEEeecccccccccc-cch
Confidence 999999995 66666553 566788988775431 122 223344544 78899999999 78898842 12
Q ss_pred -CCHHHHHHHHHHHHHh
Q 019753 288 -VDPVLAASAAVISLQG 303 (336)
Q Consensus 288 -~NAI~~a~~~i~~L~~ 303 (336)
.-|+..+..++..|..
T Consensus 236 ~hE~m~dL~~~ms~Lv~ 252 (473)
T KOG2276|consen 236 VHEAMNDLVLVMSSLVD 252 (473)
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 2455555566665543
No 64
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.53 E-value=2e-13 Score=131.99 Aligned_cols=131 Identities=15% Similarity=0.172 Sum_probs=98.6
Q ss_pred HHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHhCCCeEEEec-------------------CCceEEEEecCCCCCeEEE
Q 019753 98 DWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPL-------------------AKTGIRAWVGTGGPPFVAL 158 (336)
Q Consensus 98 ~~li~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v~~~~-------------------~~~nvia~i~g~~~p~I~l 158 (336)
+.+..+...+-..+.-|..|.++++||.++|+++|++++... .+.|||+.+++...+.|++
T Consensus 35 ~~~~~ia~~~~gR~~gS~~E~~aA~yL~~~f~~lG~~v~~q~f~~~~~~~~~~g~~~~~~~~g~nVIa~~~G~~~~~Ill 114 (346)
T PRK10199 35 TQARHIATFFPGRMTGSPAEMLSADYLRQQFQQMGYQSDIRTFNSRYIYTARDNRKNWHNVTGSTVIAAHEGKAPQQIII 114 (346)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHCCCceEeeeccccceeecccccccccCCccceEEEEECCCCCCeEEE
Confidence 334444455556677788999999999999999999975311 1257999998765689999
Q ss_pred EeccCcccCCCccCCccccccCCeeeecCC---cHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-chHHHHHHc
Q 019753 159 RADMDALPIQEAVEWEYKSKVAGKMHACGH---DAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-NGAKRMMAD 233 (336)
Q Consensus 159 ~~H~DtVP~~~~~~~pf~~~~~G~~~g~G~---dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g-~Ga~~li~~ 233 (336)
.||+|||++.....+++... | .++.|. ++++|++|.+++.|++. .++.+|.|+++++||.| .|+++++++
T Consensus 115 ~AH~DTV~p~~~~~~~~~~~--g-~~~~GA~DnasGvA~lLe~ar~l~~~--~~~~~I~fv~~~~EE~Gl~GS~~~~~~ 188 (346)
T PRK10199 115 MAHLDTYAPQSDADVDANLG--G-LTLQGMDDNAAGLGVMLELAERLKNV--PTEYGIRFVATSGEEEGKLGAENLLKR 188 (346)
T ss_pred EEEcCcCCCCCCCccccCCC--C-cccCCccccHHHHHHHHHHHHHHhhC--CCCCcEEEEEECCcccCcHHHHHHHHh
Confidence 99999997543333444321 2 344443 38899999999999864 46789999999999999 599999886
No 65
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=99.49 E-value=5.8e-14 Score=123.34 Aligned_cols=92 Identities=28% Similarity=0.454 Sum_probs=74.2
Q ss_pred EEEeccCcccC-CCccCCccccc-cCCeeeecCC-c--HHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCcc--hHHH
Q 019753 157 ALRADMDALPI-QEAVEWEYKSK-VAGKMHACGH-D--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGN--GAKR 229 (336)
Q Consensus 157 ~l~~H~DtVP~-~~~~~~pf~~~-~~G~~~g~G~-d--g~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g~--Ga~~ 229 (336)
+|.+||||||. ..|+.+||... .+|++||||+ | +++++++.+++.+++.+..++++|.|+|++|||.++ |+++
T Consensus 1 ll~~H~Dtv~~~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~g~~~ 80 (189)
T PF01546_consen 1 LLYAHMDTVPGPEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKESGDDLPGNIIFLFTPDEEIGSIGGAKH 80 (189)
T ss_dssp EEEEES-BCSTGGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTTTCSSEEEEEEESTCCGTSTTHHHH
T ss_pred CccccccccCCcCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHhccccccccccccccccccCCCcchhhh
Confidence 68999999993 34677889865 6799999997 3 788999999999998888899999999999999995 9999
Q ss_pred HHHcCCC--CCCcEEEEEEeC
Q 019753 230 MMADGAL--EDVEAIFAVHVS 248 (336)
Q Consensus 230 li~~g~~--~~~d~~i~~ept 248 (336)
+++++.. .++|+++.+|++
T Consensus 81 l~~~~~~~~~~~~~~~~~e~~ 101 (189)
T PF01546_consen 81 LLEEGAFFGLHPDYVIIGEPT 101 (189)
T ss_dssp HHHHCEEEEEEESEEEECECE
T ss_pred hhhhccccccccccccccccc
Confidence 9987421 135677766654
No 66
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=99.49 E-value=3.5e-13 Score=131.24 Aligned_cols=203 Identities=16% Similarity=0.203 Sum_probs=145.3
Q ss_pred HHHHHHHHHHhhcCCCCCc--cHHHHHHHHHHHHHhCCCeEE------E-----ec-CCceEEEEecCC-CCCeEEEEec
Q 019753 97 VDWLKSVRRTIHQNPELAF--QEFETSRLLRAELDRMEIGYK------Y-----PL-AKTGIRAWVGTG-GPPFVALRAD 161 (336)
Q Consensus 97 ~~~li~l~~~Lv~iPs~sg--~E~~~~~~l~~~L~~~G~~v~------~-----~~-~~~nvia~i~g~-~~p~I~l~~H 161 (336)
.+++.++.-+|++.||+.| .|...+++|...|+++.+=-+ . ++ ++.||+|-++|+ +..+|++.||
T Consensus 7 ~e~v~~lt~~LV~~~SvtgT~GE~a~ad~l~~vL~~~pYFqehped~~~~pi~nDpygR~nv~AlVrg~~~k~tvvl~gH 86 (553)
T COG4187 7 SERVRALTLSLVSWPSVTGTPGEGAFADRLLGVLGELPYFQEHPEDLWLQPIHNDPYGRRNVFALVRGGTSKRTVVLHGH 86 (553)
T ss_pred HHHHHHHHHHHeeccccCCCcccccHHHHHHHHHhcCchhhhChHhhcccCCCCCccccceeEEEEecCCCCceEEEeec
Confidence 4778889999999999866 688899999999988764211 1 11 577999999886 5689999999
Q ss_pred cCcccCCC---ccCCcccc------------------c----cCCeeeecCC---cHHHHHHHHHHHHHHHcCCCCCceE
Q 019753 162 MDALPIQE---AVEWEYKS------------------K----VAGKMHACGH---DAHVAMLIGAAKILKSREHLLKGTV 213 (336)
Q Consensus 162 ~DtVP~~~---~~~~pf~~------------------~----~~G~~~g~G~---dg~~A~~L~Aa~~L~~~~~~l~g~I 213 (336)
+|||...+ -.+..|++ . ...++.|||. +.++|+.|+.++.+.+. ....|+|
T Consensus 87 ~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~DMKsGlav~la~L~~fa~~-~~~~GNl 165 (553)
T COG4187 87 FDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGALDMKSGLAVHLACLEEFAAR-TDRQGNL 165 (553)
T ss_pred cceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchhhhhhhHHHHHHHHHHhhC-CCCCCcE
Confidence 99998743 23333322 0 1246889985 47888888888888875 5688999
Q ss_pred EEEEecCCCCc-chHHHHHHc--CCCC--C--CcEEEEEEeCCCCCc---eeEEeccCCccceeEEEEEEEEeecCCCCC
Q 019753 214 ILIFQPAEEAG-NGAKRMMAD--GALE--D--VEAIFAVHVSHEHPT---GVIGSRPGPLLAGCGFFHAVISGKKGGAAN 283 (336)
Q Consensus 214 ~~ift~dEE~g-~Ga~~li~~--g~~~--~--~d~~i~~ept~~~~~---G~i~~~~G~~~aG~~~~~I~v~G~~aHas~ 283 (336)
.|+.+||||.- .|++..+.. ++.+ + .-++|..+++...-. |+..+ .|. .|..---.-+.|+..|.+.
T Consensus 166 Lf~a~pdEE~~s~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~~~~dGd~~ryvY-tGt--iGKLLp~f~vvG~etHvG~ 242 (553)
T COG4187 166 LFMAVPDEEVESRGMREARPALPGLKKKFDLEYTAAINLDVTSDQGDGDQGRYVY-TGT--IGKLLPFFFVVGCETHVGY 242 (553)
T ss_pred EEEeccchhhhcccHHHHHHHHHHHHHhhCceEEEEeccccccCCCCCccceEEE-ecc--chhhcceeEEEeeccccCC
Confidence 99999999987 588766542 1111 2 235666665432211 22221 232 2455555678899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHh
Q 019753 284 PHRSVDPVLAASAAVISLQG 303 (336)
Q Consensus 284 P~~G~NAI~~a~~~i~~L~~ 303 (336)
|..|+||-.++++++.+|+-
T Consensus 243 ~f~Gvnan~maSei~~~le~ 262 (553)
T COG4187 243 PFEGVNANFMASEITRRLEL 262 (553)
T ss_pred cccCCCHHHHHHHHHHHhhc
Confidence 99999999999999999864
No 67
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=99.47 E-value=1.5e-12 Score=126.64 Aligned_cols=129 Identities=23% Similarity=0.243 Sum_probs=102.1
Q ss_pred HHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHhCCCeEEEecCCceEEEEecCC-CCCeEEEEeccCcccC---------
Q 019753 98 DWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTG-GPPFVALRADMDALPI--------- 167 (336)
Q Consensus 98 ~~li~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v~~~~~~~nvia~i~g~-~~p~I~l~~H~DtVP~--------- 167 (336)
+.+++++++|+++|++|++|.++++++.++|+++|++++++ ...|+++.+.+. ++|+|+|.||||+|..
T Consensus 3 ~~~~~lLk~Lv~~~s~SG~E~~V~~~l~~~l~~~g~ev~~D-~~Gnlia~~~g~~~~~~v~l~aHmDevG~~V~~I~~~G 81 (343)
T TIGR03106 3 DYLTETLLALLAIPSPTGFTDAVVRYVAERLEDLGIEYELT-RRGAIRATLPGREATPARAVVTHLDTLGAMVRELKDNG 81 (343)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCeEEEC-CCeEEEEEECCCCCCCeEEEEEeeccccceeeEECCCC
Confidence 56889999999999999999999999999999999998875 467999988663 4689999999999863
Q ss_pred -------CCcc---------------C---------C---------------ccc-----------c-------------
Q 019753 168 -------QEAV---------------E---------W---------------EYK-----------S------------- 177 (336)
Q Consensus 168 -------~~~~---------------~---------~---------------pf~-----------~------------- 177 (336)
|.+. . . +++ +
T Consensus 82 ~l~~~~iGG~~~~~l~g~~v~i~t~~g~~~Gvi~~~~~~~H~~~~~~~~~~~~~~~~~l~iDiG~~s~ee~~~lGV~~Gd 161 (343)
T TIGR03106 82 RLELVPIGHWSARFAEGARVTIFTDSGEFRGTILPLKASGHAFNEEIDSQPTGWDHVEVRVDARASCRADLVRLGISVGD 161 (343)
T ss_pred eEEEEecCCCcccceeCCEEEEEeCCCeEEEEECCCCCCCccCChHHccCCCCCcccEEEEECCcCCHHHHHHcCCCCCC
Confidence 1000 0 0 011 0
Q ss_pred ----------ccCCeeeecCCc--HHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCcchH
Q 019753 178 ----------KVAGKMHACGHD--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGA 227 (336)
Q Consensus 178 ----------~~~G~~~g~G~d--g~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g~Ga 227 (336)
..+|+++|++.| +++++++.+++.|++.+.+++.+|+++|+++||.|.|+
T Consensus 162 ~v~~~~~~~~~~~~~i~gr~~D~K~G~a~~l~~~~~l~~~~~~~~~~v~~~~t~qEEvG~ga 223 (343)
T TIGR03106 162 FVAFDPQPEFLANGFIVSRHLDDKAGVAALLAALKAIVEHKVPLPVDVHPLFTITEEVGSGA 223 (343)
T ss_pred EEEECCccEEecCCEEEEEecccHHhHHHHHHHHHHHHhcCCCCCceEEEEEECCcccCccc
Confidence 013556777754 88999999999998876668899999999999999664
No 68
>PRK09961 exoaminopeptidase; Provisional
Probab=99.23 E-value=3.5e-10 Score=110.22 Aligned_cols=143 Identities=17% Similarity=0.232 Sum_probs=105.8
Q ss_pred HHHHHHhhcCCCCCccHHHHHHHHHHHHHhCCCeEEEecCCceEEEEecCCCCCeEEEEeccCcccC-------------
Q 019753 101 KSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPI------------- 167 (336)
Q Consensus 101 i~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v~~~~~~~nvia~i~g~~~p~I~l~~H~DtVP~------------- 167 (336)
++++++|+++|++|++|.++++++.++|+++|.+++++ ...|+++++++.++|+|+|.||||+|+.
T Consensus 3 ~~~L~~L~~~~s~sG~E~~v~~~i~~~l~~~~~~v~~D-~~Gnvi~~~~g~~~~~v~l~aHmDevg~~V~~I~~~G~l~~ 81 (344)
T PRK09961 3 LSLLKALSEADAIASSEQEVRQILLEEADRLQKEVRFD-GLGSVLIRLNESTGPKVMICAHMDEVGFMVRSISREGAIDV 81 (344)
T ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHHhhCCEEEEC-CCCCEEEEEcCCCCCEEEEEeccceeceEEEEECCCceEEE
Confidence 36799999999999999999999999999999998875 5679999886644689999999999973
Q ss_pred ---CCcc---------------C-------------Cccc---------cc-----------------------cCCeee
Q 019753 168 ---QEAV---------------E-------------WEYK---------SK-----------------------VAGKMH 184 (336)
Q Consensus 168 ---~~~~---------------~-------------~pf~---------~~-----------------------~~G~~~ 184 (336)
|.+. . .++. +. .++++.
T Consensus 82 ~~vGG~~~~~~~~~~v~i~~~~g~~i~Gvi~~~~~~~~~~~l~iDiG~~s~ee~~~~GI~~Gd~v~~~~~~~~~~~~~i~ 161 (344)
T PRK09961 82 LPVGNVRMAARQLQPVRITTREECKIPGLLNGDRQGNDVSAMRVDIGARSYDEVMQAGIRPGDRVTFDTTFQVLPHQRVM 161 (344)
T ss_pred EeCCCccccccCCCEEEEEeCCCCEeeEEEChhhcCCCHHHEEEEcCCCCHHHHHhcCCCCCCEEEEcceeEEecCCEEE
Confidence 1110 0 0111 00 001222
Q ss_pred ecCCc--HHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-chHHHHHHcCCCCCCcEEEEEEeCC
Q 019753 185 ACGHD--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-NGAKRMMADGALEDVEAIFAVHVSH 249 (336)
Q Consensus 185 g~G~d--g~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g-~Ga~~li~~g~~~~~d~~i~~ept~ 249 (336)
|+.-| .++++++.+++.+++. ++..+|+++|+..||.| .|++..... + ++|.+|+.+.+.
T Consensus 162 gkalDnR~g~~~lle~l~~l~~~--~~~~~v~~~~tvqEEvG~rGa~~aa~~--i-~pd~~I~vDv~~ 224 (344)
T PRK09961 162 GKAFDDRLGCYLLVTLLRELHDA--ELPAEVWLVASSSEEVGLRGGQTATRA--V-SPDVAIVLDTAC 224 (344)
T ss_pred EeechhhHhHHHHHHHHHHhhhc--CCCceEEEEEEcccccchHHHHHHHhc--c-CCCEEEEEeccC
Confidence 33333 6788888898888753 46789999999999999 688777542 3 479999988653
No 69
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=99.22 E-value=3e-10 Score=110.31 Aligned_cols=146 Identities=23% Similarity=0.224 Sum_probs=107.9
Q ss_pred HHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHhCCCeEEEecCCceEEEEecCCCC-CeEEEEeccCcccC---------
Q 019753 98 DWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGP-PFVALRADMDALPI--------- 167 (336)
Q Consensus 98 ~~li~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v~~~~~~~nvia~i~g~~~-p~I~l~~H~DtVP~--------- 167 (336)
+++.+++++|.++|++||.|.++.+++.++|++++.+++++ ...|+++++++.++ |.|++.||||+|-.
T Consensus 2 ~~~~~~LkeL~~~~gpsG~E~eVr~~~~~el~~~~~ev~~D-~lGnlia~~~g~~g~~~imi~AHmDEiG~mV~~I~~~G 80 (355)
T COG1363 2 EELLELLKELLEAPGPSGYEEEVRDVLKEELEPLGDEVEVD-RLGNLIAKKGGKNGPPKVMIAAHMDEIGFMVKEIEDDG 80 (355)
T ss_pred hHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHhCCceEEc-CCCcEEEEecCCCCCccEEEEeecceeeeeEEEECCCc
Confidence 46788999999999999999999999999999999999885 45799999988434 56999999999731
Q ss_pred -------CCccC---------------Cccc------------cc-------------c---------------------
Q 019753 168 -------QEAVE---------------WEYK------------SK-------------V--------------------- 179 (336)
Q Consensus 168 -------~~~~~---------------~pf~------------~~-------------~--------------------- 179 (336)
|.|.. .++. .. .
T Consensus 81 ~Lr~~~IGG~~~~~~~gq~v~i~t~~g~~i~GvIg~~p~H~~~~~~~~~~~~~~~el~iDiga~skeea~~lGI~vGd~v 160 (355)
T COG1363 81 FLRFVPIGGWDPQVLEGQRVTIHTDKGKKIRGVIGSKPPHLLKEEAERKKPPEWDELFIDIGASSKEEAEELGIRVGDFV 160 (355)
T ss_pred eEEEEEcCCcChhhccCcEEEEEeCCCcEEeeeEcccCccccCccccccCCCchhhEEEECCcCCHHHHHhcCCCCCCEE
Confidence 11100 0000 00 0
Q ss_pred ----------CCeeeecCCc--HHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-chHHHHHHcCCCCCCcEEEEEE
Q 019753 180 ----------AGKMHACGHD--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-NGAKRMMADGALEDVEAIFAVH 246 (336)
Q Consensus 180 ----------~G~~~g~G~d--g~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g-~Ga~~li~~g~~~~~d~~i~~e 246 (336)
++++-++..| .++++++.+++.| + +..++.+++|+|++.||.| +||+..... + ++|++|..+
T Consensus 161 ~~~~~~~~l~~~~i~skalDdR~gva~lle~lk~l-~-~~~~~~~vy~v~tvqEEVGlrGA~~~a~~--i-~pd~aiavd 235 (355)
T COG1363 161 VFDPRFRELANGRVVSKALDDRAGVAALLELLKEL-K-GIELPADVYFVASVQEEVGLRGAKTSAFR--I-KPDIAIAVD 235 (355)
T ss_pred EEcCceEEecCCcEEeeeccchHhHHHHHHHHHHh-c-cCCCCceEEEEEecchhhccchhhccccc--c-CCCEEEEEe
Confidence 0111122222 7889999999999 4 5678899999999999999 687766543 2 478888887
Q ss_pred eCC
Q 019753 247 VSH 249 (336)
Q Consensus 247 pt~ 249 (336)
.++
T Consensus 236 ~~~ 238 (355)
T COG1363 236 VTP 238 (355)
T ss_pred ccc
Confidence 654
No 70
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=99.17 E-value=9e-10 Score=107.49 Aligned_cols=142 Identities=19% Similarity=0.163 Sum_probs=104.5
Q ss_pred HHHHHhhcCCCCCccHHHHHHHHHHHHHhCCCeEEEecCCceEEEEecCC--CCCeEEEEeccCcccC------------
Q 019753 102 SVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTG--GPPFVALRADMDALPI------------ 167 (336)
Q Consensus 102 ~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v~~~~~~~nvia~i~g~--~~p~I~l~~H~DtVP~------------ 167 (336)
+++++|.++|++||.|.++++++.++|++++.+++++. ..|+++.++++ .+|+|+|.||||+|+.
T Consensus 2 ~~L~~L~~~~gpSG~E~~v~~~i~~~l~~~~~~v~~D~-~GNvia~~~g~~~~~~~vml~AHmDeVGf~V~~I~~~G~l~ 80 (350)
T TIGR03107 2 NKIKEVTELQGTSGFEHPIRDYLRQDITPLVDQVETDG-LGGIFGIKESQVENAPRVMVAAHMDEVGFMVSQIKPDGTFR 80 (350)
T ss_pred hHHHHHHhCCCCCCCcHHHHHHHHHHHHhhCCEEEECC-CCCEEEEecCCCCCCCEEEEEecccEeCEEEEEECCCceEE
Confidence 46899999999999999999999999999999988764 46999988663 3689999999999862
Q ss_pred ----CCcc--------------CC-c-----------c-cc---c----------c------------------------
Q 019753 168 ----QEAV--------------EW-E-----------Y-KS---K----------V------------------------ 179 (336)
Q Consensus 168 ----~~~~--------------~~-p-----------f-~~---~----------~------------------------ 179 (336)
|.+. +. + + +. . .
T Consensus 81 ~~~vGG~~~~~l~gq~V~i~t~~g~~i~GViG~~~~Hl~~~~~~~~~~~~~~~l~IDiGa~skee~~~~GI~vGd~v~~~ 160 (350)
T TIGR03107 81 VVELGGWNPLVVSSQRFTLFTRKGKKYPVISGSVPPHLLRGSSGGPQLPAVSDILFDGGFTNKDEAWSFGVRPGDVIVPQ 160 (350)
T ss_pred EEeCCCccccccCCcEEEEEeCCCCEEEEEEeCCcccccChhhcccccCChhhEEEEeCCCCHHHHHhcCCCCCCEEEEC
Confidence 1110 00 0 0 00 0 0
Q ss_pred --------CCeeeecCCc--HHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-chHHHHHHcCCCCCCcEEEEEEeC
Q 019753 180 --------AGKMHACGHD--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-NGAKRMMADGALEDVEAIFAVHVS 248 (336)
Q Consensus 180 --------~G~~~g~G~d--g~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g-~Ga~~li~~g~~~~~d~~i~~ept 248 (336)
.+++.++..| .++++++.+++.|++. +++.+|+++|++.||.| .||+..... + ++|.+|+.+.+
T Consensus 161 ~~~~~~~~~~~i~~kalDdR~g~a~l~e~l~~l~~~--~~~~~l~~~~tvqEEvG~rGA~~aa~~--i-~pD~aI~vDv~ 235 (350)
T TIGR03107 161 TETILTANGKNVISKAWDNRYGVLMILELLESLKDQ--ELPNTLIAGANVQEEVGLRGAHVSTTK--F-NPDIFFAVDCS 235 (350)
T ss_pred CCeEEEcCCCEEEEeccccHHHHHHHHHHHHHhhhc--CCCceEEEEEEChhhcCchhhhhHHhh--C-CCCEEEEEecC
Confidence 0112233333 6788899999999764 46789999999999999 688865442 3 57999999876
Q ss_pred C
Q 019753 249 H 249 (336)
Q Consensus 249 ~ 249 (336)
+
T Consensus 236 ~ 236 (350)
T TIGR03107 236 P 236 (350)
T ss_pred C
Confidence 4
No 71
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=99.16 E-value=1.5e-10 Score=114.67 Aligned_cols=218 Identities=14% Similarity=0.132 Sum_probs=151.9
Q ss_pred HHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHhCCCeE-EEe-------cCC--c-eEEEEecCC--CCCeEEEEeccC
Q 019753 97 VDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGY-KYP-------LAK--T-GIRAWVGTG--GPPFVALRADMD 163 (336)
Q Consensus 97 ~~~li~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v-~~~-------~~~--~-nvia~i~g~--~~p~I~l~~H~D 163 (336)
.+++++.+.++++||+.|++|.+++.++.+|++..|+.+ ... +.. . -+.+.+++. .-|.+.|.+|||
T Consensus 4 ~~~l~~~F~~~~kI~~~S~~e~~~~p~~~~~~k~~~~~v~dE~~~i~~~~~a~~~~~~~~~~L~a~~d~V~~i~~~sh~D 83 (414)
T COG2195 4 MERLLDRFLELVKIPTQSKHEKAVAPSTVGQAKLLGLLVEDELGNIGLKKPATAGENYVPAVLQAHLDMVPEIGFISHHD 83 (414)
T ss_pred hHHHHHHHHHHeeCCCCCCCccccccccHHHHHHcCchhhhhhccccccccccCCCCeeeEEeecccccccccccccccc
Confidence 467888899999999999999999999999999999998 321 111 1 255667664 358899999999
Q ss_pred cccCC-------Cc---------------------cCCccccc--------cCCe-eeecCCcHHHHHHHHHHHHHHHcC
Q 019753 164 ALPIQ-------EA---------------------VEWEYKSK--------VAGK-MHACGHDAHVAMLIGAAKILKSRE 206 (336)
Q Consensus 164 tVP~~-------~~---------------------~~~pf~~~--------~~G~-~~g~G~dg~~A~~L~Aa~~L~~~~ 206 (336)
|+|-. ++ ...|.... .+|. +-|-+++++.+.++.++.++++..
T Consensus 84 t~~d~~~~~v~~~~l~~~~Gad~i~~~~~~a~L~~~~~P~~~~~t~~~ei~~dGa~LLgaD~kAGia~i~~al~~~~~~~ 163 (414)
T COG2195 84 TVPDPIGPNVNPQILKATLGADNIGLAIGLAVLSPEHFPLEVLLTGDEEITTDGATLLGADDKAGIAEIMTALSVLREKH 163 (414)
T ss_pred ccccccccccCCceeeeccCcchhhhhhHHhhcCcccCCceeeeecceEEeccCccccCCcchhHHHHHHHHHHHHhhcC
Confidence 99621 11 01121110 1221 122223377888888999998642
Q ss_pred -CCCCceEEEEEecCCCCc-chHHHHHHcCCCCCCcEEEEEEeCCCCCceeEEeccCCccceeEEEEEEEEeecCCCCC-
Q 019753 207 -HLLKGTVILIFQPAEEAG-NGAKRMMADGALEDVEAIFAVHVSHEHPTGVIGSRPGPLLAGCGFFHAVISGKKGGAAN- 283 (336)
Q Consensus 207 -~~l~g~I~~ift~dEE~g-~Ga~~li~~g~~~~~d~~i~~ept~~~~~G~i~~~~G~~~aG~~~~~I~v~G~~aHas~- 283 (336)
..++++|.+.|++|||.| .|+..+.-.. | .+++.+.... .+.|.+.... . +...+++++.|+..|++.
T Consensus 164 ~~i~h~~i~~g~s~~Ee~g~rg~~~~~~a~-f-~a~~ay~iDG---g~~g~i~~ea--~--~~~~~~~~~~g~~~h~~~a 234 (414)
T COG2195 164 PEIPHGGIRGGFSPDEEIGGRGAANKDVAR-F-LADFAYTLDG---GPVGEIPREA--F--NAAAVRATIVGPNVHPGSA 234 (414)
T ss_pred ccccccCeEEEecchHHhhhhhhhhccHHh-h-hcceeEecCC---CccCeeeeec--c--chheeeeeeeccCcCccch
Confidence 567899999999999999 7888775432 1 2456666542 2346664321 1 456899999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhhccCCCCCceEEEEEEEecCCC
Q 019753 284 PHRSVDPVLAASAAVISLQGLVSREANPLDSQVSLSLWIITTHFA 328 (336)
Q Consensus 284 P~~G~NAI~~a~~~i~~L~~l~~~~~~~~~~~tl~vg~I~gG~~~ 328 (336)
+...+||+..+.+++..+.... .+ ..++.+.|..+++...
T Consensus 235 ~~~~i~a~~~a~e~~~~~~~~~---~~--e~t~~~~Gv~~~~~~~ 274 (414)
T COG2195 235 KGKMINALLLAAEFILELPLEE---VP--ELTEGPEGVYHLGDST 274 (414)
T ss_pred HHHHhhHHHhhhhhhhcCCccc---cc--ccccccceEEeccccc
Confidence 8888999999999888876532 11 2456777888887654
No 72
>PRK09864 putative peptidase; Provisional
Probab=99.15 E-value=1.4e-09 Score=106.30 Aligned_cols=140 Identities=15% Similarity=0.111 Sum_probs=102.4
Q ss_pred HHHHHHhhcCCCCCccHHHHHHHHHHHHHhCCCeEEEecCCceEEEEecCCCCCeEEEEeccCcccC-------------
Q 019753 101 KSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLAKTGIRAWVGTGGPPFVALRADMDALPI------------- 167 (336)
Q Consensus 101 i~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v~~~~~~~nvia~i~g~~~p~I~l~~H~DtVP~------------- 167 (336)
.+++++|.++|++||.|.++++++.++|+.++.++.++. ..|+++.. +.++++|+|.||||+|+.
T Consensus 3 ~~~L~~L~~~~g~SG~E~~v~~~l~~~l~~~~dev~~D~-~GNli~~~-g~~~~kvml~AHmDevG~mV~~I~~~G~l~~ 80 (356)
T PRK09864 3 IELLQQLCEASAVSGDEQEVRDILINTLEPCVNEITFDG-LGSFVARK-GNKGPKVAVVGHMDEVGFMVTHIDESGFLRF 80 (356)
T ss_pred HHHHHHHHcCCCCCCchHHHHHHHHHHHHHhCCEEEECC-CCCEEEEe-CCCCcEEEEEecccccCEEEEEECCCCeEEE
Confidence 467899999999999999999999999999999987754 46999986 333579999999999862
Q ss_pred ---CCcc--------------CC-ccc--------------------------------cc-------------------
Q 019753 168 ---QEAV--------------EW-EYK--------------------------------SK------------------- 178 (336)
Q Consensus 168 ---~~~~--------------~~-pf~--------------------------------~~------------------- 178 (336)
|.+. +. ++. +.
T Consensus 81 ~~lGG~~~~~l~~q~V~i~t~~g~~v~GVig~~~~H~~~~~~~~k~~~~~~l~IDiGa~s~ee~~~~GV~vGD~v~~~~~ 160 (356)
T PRK09864 81 TTIGGWWNQSMLNHRVTIRTHKGVKIPGVIGSVAPHALTEKQKQQPLSFDEMFIDIGANSREEVEKRGVEIGDFISPEAN 160 (356)
T ss_pred EeCCCcCccccCCCEEEEEeCCCCEEEEEEeCCccccCChhHcccCCChhHEEEEeCCCCHHHHHhcCCCCCCEEEECCC
Confidence 1110 00 000 00
Q ss_pred ----cCCeeeecCCc--HHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-chHHHHHHcCCCCCCcEEEEEEeCC
Q 019753 179 ----VAGKMHACGHD--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-NGAKRMMADGALEDVEAIFAVHVSH 249 (336)
Q Consensus 179 ----~~G~~~g~G~d--g~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g-~Ga~~li~~g~~~~~d~~i~~ept~ 249 (336)
.++++.++..| .++++++.+++.|++ ++.+|+++||+.||.| .||+..... + ++|.+|+.+.++
T Consensus 161 ~~~l~~~~i~~kalDnR~g~~~lle~l~~l~~----~~~~vy~v~TvQEEvGlrGA~~aa~~--i-~PDiaIavDvt~ 231 (356)
T PRK09864 161 FACWGEDKVVGKALDNRIGCAMMAELLQTVNN----PEITLYGVGSVEEEVGLRGAQTSAEH--I-KPDVVIVLDTAV 231 (356)
T ss_pred cEEEcCCEEEEEeCccHHHHHHHHHHHHHhhc----CCCeEEEEEEcchhcchHHHHHHHhc--C-CCCEEEEEeccc
Confidence 00112233333 678888888888854 6789999999999999 688877543 3 479999988764
No 73
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=98.94 E-value=1.7e-09 Score=87.29 Aligned_cols=68 Identities=21% Similarity=0.139 Sum_probs=59.1
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCHHHHHHHHHHHHHhhhhhc-----cCCCCCceEEEEEEEecCCCc-CCCC
Q 019753 266 GCGFFHAVISGKKGGAANPHRSVDPVLAASAAVISLQGLVSRE-----ANPLDSQVSLSLWIITTHFAL-NPSF 333 (336)
Q Consensus 266 G~~~~~I~v~G~~aHas~P~~G~NAI~~a~~~i~~L~~l~~~~-----~~~~~~~tl~vg~I~gG~~~~-~p~~ 333 (336)
|..+++|+++|+++|+|.|+.|+||+..+++++.+|+++..+. ....+.++++++.|+||...+ +|+.
T Consensus 5 G~~~~~i~~~G~~~H~s~~~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~~~n~ip~~ 78 (111)
T PF07687_consen 5 GVIWFRITITGKSGHSSRPEKGVNAIEAAARFLNALEELEFEWAFRPEEFFPGPPTLNIGSIEGGTAPNVIPDE 78 (111)
T ss_dssp EEEEEEEEEESBSEETTSGGGSBCHHHHHHHHHHHHHHTTCHBTSTHHHCTCTSEEEEEEEEEEESSTTEESSE
T ss_pred CEEEEEEEEEeeccCCCCccCccCHHHHHHHHHHHHHHhhcccccccccccccccceeEeecccCCcCCEECCE
Confidence 7899999999999999999999999999999999999885432 244678899999999998764 8865
No 74
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.25 E-value=4.5e-06 Score=88.27 Aligned_cols=92 Identities=22% Similarity=0.407 Sum_probs=73.2
Q ss_pred ceEEEEecCC---CCCeEEEEeccCcccCCCccCCccccccCCeeeecCCcH-HHHHHHHHHHHHHHcCCCCCceEEEEE
Q 019753 142 TGIRAWVGTG---GPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDA-HVAMLIGAAKILKSREHLLKGTVILIF 217 (336)
Q Consensus 142 ~nvia~i~g~---~~p~I~l~~H~DtVP~~~~~~~pf~~~~~G~~~g~G~dg-~~A~~L~Aa~~L~~~~~~l~g~I~~if 217 (336)
.|+++++.++ +.-.|++++|.|+||.+ +|.|.|| .+|.||+++|.+.+....+..+|+|+|
T Consensus 129 ~NIvVki~~k~~~~~~~lLlnaHfDSvpt~---------------~gAtDDg~~va~mLe~lRv~s~~~~~l~~~vVFLf 193 (834)
T KOG2194|consen 129 SNIVVKISPKNGNDKNALLLNAHFDSVPTG---------------PGATDDGSGVASMLEALRVLSKSDKLLTHSVVFLF 193 (834)
T ss_pred eeEEEecCCCCCCccceeeeeccccccCCC---------------CCCCcchhHHHHHHHHHHHhhcCCCcccccEEEEe
Confidence 5899999775 23379999999999953 3445553 578899999999988777899999999
Q ss_pred ecCCCCc-chHHHHHHc-CCCCCCcEEEEEEeC
Q 019753 218 QPAEEAG-NGAKRMMAD-GALEDVEAIFAVHVS 248 (336)
Q Consensus 218 t~dEE~g-~Ga~~li~~-g~~~~~d~~i~~ept 248 (336)
...||.+ .|+..++.+ .+.+.+.++|..|.+
T Consensus 194 NgaEE~~L~gsH~FItQH~w~~~~ka~INLea~ 226 (834)
T KOG2194|consen 194 NGAEESGLLGSHAFITQHPWSKNIKAVINLEAA 226 (834)
T ss_pred cCcccchhhhcccceecChhhhhhheEEecccc
Confidence 9999999 599988885 455567888877754
No 75
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=97.95 E-value=1.7e-05 Score=69.44 Aligned_cols=83 Identities=22% Similarity=0.383 Sum_probs=57.4
Q ss_pred eEEEEeccCcccCCCccCCccccccCCeeeecCCc-HHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-chHHHHHH
Q 019753 155 FVALRADMDALPIQEAVEWEYKSKVAGKMHACGHD-AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-NGAKRMMA 232 (336)
Q Consensus 155 ~I~l~~H~DtVP~~~~~~~pf~~~~~G~~~g~G~d-g~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g-~Ga~~li~ 232 (336)
.|++.||+|+++ ..... ....|...+ .+++++|..++.|++.+.+++.+|+|+|+.+||.| .|++++++
T Consensus 2 ~ivi~aH~Ds~~-~~~~~--------~~~~GA~DnasGva~lLelAr~l~~~~~~~~~~i~fv~~~~EE~gl~GS~~~~~ 72 (179)
T PF04389_consen 2 YIVIGAHYDSVG-GDADG--------SWSPGANDNASGVAALLELARVLKELKPQPKRTIRFVFFDGEEQGLLGSRAFVE 72 (179)
T ss_dssp EEEEEEE--BES-CCC-T--------CSSS-TTTTHHHHHHHHHHHHHHHHSTHSSSEEEEEEEESSGGGTSHHHHHHHH
T ss_pred EEEEEeecCCCC-CcCCC--------cccCCcccchHHHHHHHHHHHHHHHhhcccCccEEEEEecccccCccchHHHHH
Confidence 589999999998 21111 011222223 67899999999999977778899999999999999 59999986
Q ss_pred c--CCCCCCcEEEEEE
Q 019753 233 D--GALEDVEAIFAVH 246 (336)
Q Consensus 233 ~--g~~~~~d~~i~~e 246 (336)
+ ...+++.++|.++
T Consensus 73 ~~~~~~~~~~~~inlD 88 (179)
T PF04389_consen 73 HDHEELDNIAAVINLD 88 (179)
T ss_dssp HHHCHHHHEEEEEEEC
T ss_pred hhhcccccceeEEecc
Confidence 3 2223456677665
No 76
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=97.71 E-value=0.00024 Score=67.99 Aligned_cols=61 Identities=30% Similarity=0.374 Sum_probs=46.0
Q ss_pred eeecCCc--HHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-chHHHHHHcCCCCCCcEEEEEEeC
Q 019753 183 MHACGHD--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-NGAKRMMADGALEDVEAIFAVHVS 248 (336)
Q Consensus 183 ~~g~G~d--g~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g-~Ga~~li~~g~~~~~d~~i~~ept 248 (336)
+.|+..| .++++++.+++.|++. .+..+|+|+|++.||.| .|++....+ + ++|.+|+.+.+
T Consensus 128 i~gkalDdR~g~~~lle~l~~l~~~--~~~~~v~~v~tvqEEvG~rGA~~aa~~--i-~PD~ai~vD~~ 191 (292)
T PF05343_consen 128 IVGKALDDRAGCAVLLELLRELKEK--ELDVDVYFVFTVQEEVGLRGAKTAAFR--I-KPDIAIAVDVT 191 (292)
T ss_dssp EEETTHHHHHHHHHHHHHHHHHTTS--S-SSEEEEEEESSCTTTSHHHHHHHHH--H--CSEEEEEEEE
T ss_pred EEEEeCCchhHHHHHHHHHHHHhhc--CCCceEEEEEEeeeeecCcceeecccc--c-CCCEEEEEeee
Confidence 3455544 6788889999998874 35589999999999999 688877654 2 47999888764
No 77
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.071 Score=50.41 Aligned_cols=113 Identities=18% Similarity=0.211 Sum_probs=78.0
Q ss_pred cCCCCCccHHHHHHHHHHHHHhCCCeEEEec-------C---CceEEEEecCCCCCeEEEEeccCcccCCCccCCccccc
Q 019753 109 QNPELAFQEFETSRLLRAELDRMEIGYKYPL-------A---KTGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYKSK 178 (336)
Q Consensus 109 ~iPs~sg~E~~~~~~l~~~L~~~G~~v~~~~-------~---~~nvia~i~g~~~p~I~l~~H~DtVP~~~~~~~pf~~~ 178 (336)
++|... +-.++.+||.+.|+.+|+.++.+. + =.|+++++.......+++.+|+|+--...
T Consensus 64 Rvpgs~-g~~~vr~~i~~~l~~l~w~ve~~~f~~~tp~g~~~f~nii~tl~~~A~r~lVlachydsk~~p~--------- 133 (338)
T KOG3946|consen 64 RVPGSP-GSRQVRRFIIQHLRNLGWAVETDAFTDNTPLGTRNFNNLIATLDPNASRYLVLACHYDSKIFPG--------- 133 (338)
T ss_pred ccCCCC-ccHHHHHHHHHHHHhcCceeeeccccccCcceeeeeeeEEEecCCCcchheeeecccccccCCC---------
Confidence 455533 347899999999999999988641 1 14788988765457899999999974211
Q ss_pred cCCe-eeecCCcHHHHHHHHHHHHHHHcC----CCCCceEEEEEecCCCCc-------c--hHHHHHHc
Q 019753 179 VAGK-MHACGHDAHVAMLIGAAKILKSRE----HLLKGTVILIFQPAEEAG-------N--GAKRMMAD 233 (336)
Q Consensus 179 ~~G~-~~g~G~dg~~A~~L~Aa~~L~~~~----~~l~g~I~~ift~dEE~g-------~--Ga~~li~~ 233 (336)
|. +.+-|....+|+++..+++|.+.- ....-.+.++|.-+||.. + |+|+|.+.
T Consensus 134 --~~~vgatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFFDGEEAf~eW~p~DSlYGsRhLA~~ 200 (338)
T KOG3946|consen 134 --GMFVGATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFFDGEEAFEEWGPEDSLYGSRHLAAK 200 (338)
T ss_pred --cceEeeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEeccHHHHhhcCCccccchHHHHHHH
Confidence 22 122232345788888887775432 123458999999999974 2 99999875
No 78
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=96.22 E-value=0.016 Score=57.89 Aligned_cols=66 Identities=27% Similarity=0.346 Sum_probs=50.1
Q ss_pred CCCeEEEEeccCcccCCCccCCccccccCCeeeecCCc-HHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc-chHHH
Q 019753 152 GPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHD-AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG-NGAKR 229 (336)
Q Consensus 152 ~~p~I~l~~H~DtVP~~~~~~~pf~~~~~G~~~g~G~d-g~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g-~Ga~~ 229 (336)
..+.+++.+|+|++|.+ .|...| .++|++|.+++.|++.. ++.+|+|++...||.| .|+.+
T Consensus 207 ~~~~~~~~a~~~s~~~~---------------~GA~DNasGva~llEiAr~l~~~~--p~~~v~f~~~~aEE~Gl~GS~~ 269 (435)
T COG2234 207 SDSLGLLGAHIDSVPTG---------------PGADDNASGVAALLELARVLKGNP--PKRTVRFVAFGAEESGLLGSEA 269 (435)
T ss_pred CCceeeecccccCCcCC---------------CCcccccHHHHHHHHHHHHHhcCC--CCceEEEEEecchhhcccccHH
Confidence 34667777777776632 111222 57889999999999764 8899999999999998 69999
Q ss_pred HHHcC
Q 019753 230 MMADG 234 (336)
Q Consensus 230 li~~g 234 (336)
+..+-
T Consensus 270 ~~~~~ 274 (435)
T COG2234 270 YVKRL 274 (435)
T ss_pred HHhcC
Confidence 98763
No 79
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=95.42 E-value=0.048 Score=58.01 Aligned_cols=76 Identities=21% Similarity=0.274 Sum_probs=56.6
Q ss_pred ceEEEEecCC--CCCeEEEEeccCcccCCCccCCccccccCCeeeecCCcHHHHHHHHHHHHH---HHcCCCCCceEEEE
Q 019753 142 TGIRAWVGTG--GPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKIL---KSREHLLKGTVILI 216 (336)
Q Consensus 142 ~nvia~i~g~--~~p~I~l~~H~DtVP~~~~~~~pf~~~~~G~~~g~G~dg~~A~~L~Aa~~L---~~~~~~l~g~I~~i 216 (336)
.|+++.+.|. +..-|++.+|-|..-.+ .+ +...+++.++..++.+ ++.+-+|+++|+|+
T Consensus 339 ~NIig~I~Gs~epD~~ViigahrDSw~~G-------------a~---dp~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F~ 402 (702)
T KOG2195|consen 339 QNIIGKIEGSEEPDRYVIIGAHRDSWTFG-------------AI---DPNSGTALLLEIARALSKLKKRGWRPRRTILFA 402 (702)
T ss_pred eeEEEEEecCcCCCeEEEEeccccccccC-------------Cc---CCCccHHHHHHHHHHHHHHHHcCCCccceEEEE
Confidence 5999999984 67899999999999642 11 1123466666655554 45577889999999
Q ss_pred EecCCCCc-chHHHHHHc
Q 019753 217 FQPAEEAG-NGAKRMMAD 233 (336)
Q Consensus 217 ft~dEE~g-~Ga~~li~~ 233 (336)
.+.+||.| -|+-.+++.
T Consensus 403 sWdAeEfGliGStE~~E~ 420 (702)
T KOG2195|consen 403 SWDAEEFGLLGSTEWAEE 420 (702)
T ss_pred EccchhccccccHHHHHH
Confidence 99999999 488877764
No 80
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=94.85 E-value=0.16 Score=47.06 Aligned_cols=66 Identities=24% Similarity=0.357 Sum_probs=49.5
Q ss_pred CeEEEEeccCcccCCCccCCccccccCCeeeecCCc---HHHHHHHHHHHHHHHc---CCCCCceEEEEEecCCCCc-ch
Q 019753 154 PFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHD---AHVAMLIGAAKILKSR---EHLLKGTVILIFQPAEEAG-NG 226 (336)
Q Consensus 154 p~I~l~~H~DtVP~~~~~~~pf~~~~~G~~~g~G~d---g~~A~~L~Aa~~L~~~---~~~l~g~I~~ift~dEE~g-~G 226 (336)
|.|++.+.||+.-.-. +. +.|.+ .+++++|+++++|.+. ...++.+|.|.|..+|-.+ .|
T Consensus 1 ~iIlv~armDs~s~F~-----------~~--s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~dYiG 67 (234)
T PF05450_consen 1 PIILVVARMDSFSFFH-----------DL--SPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESFDYIG 67 (234)
T ss_pred CEEEEEecccchhccc-----------CC--CCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccccccc
Confidence 6799999999986421 22 23443 5677889999999865 2356799999999999988 78
Q ss_pred HHHHHH
Q 019753 227 AKRMMA 232 (336)
Q Consensus 227 a~~li~ 232 (336)
++.|+.
T Consensus 68 S~R~vy 73 (234)
T PF05450_consen 68 SSRFVY 73 (234)
T ss_pred hHHHHH
Confidence 888864
No 81
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=92.67 E-value=1.8 Score=43.50 Aligned_cols=93 Identities=19% Similarity=0.307 Sum_probs=60.6
Q ss_pred ceEEEEecCC--------CCCeEEEEeccCcccCCCccCCccccccCCeeeecCCc---HHHHHHHHHHHHHHHcC----
Q 019753 142 TGIRAWVGTG--------GPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHD---AHVAMLIGAAKILKSRE---- 206 (336)
Q Consensus 142 ~nvia~i~g~--------~~p~I~l~~H~DtVP~~~~~~~pf~~~~~G~~~g~G~d---g~~A~~L~Aa~~L~~~~---- 206 (336)
.|+.+++..+ .-|+|++.+|+||.-.-. | +..|.| .++.++|..++.+.+.-
T Consensus 194 ~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap-----------~--lsvgADSNGSGvvaLLelarlfSkly~yps 260 (555)
T KOG2526|consen 194 LNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAP-----------G--LSVGADSNGSGVVALLELARLFSKLYDYPS 260 (555)
T ss_pred ceEEeecccccccccccccCCeEEEEEeccccccCC-----------C--CCCCCCCCCccHHHHHHHHHHHHHHhcCcc
Confidence 4888888622 349999999999986421 1 122332 35678888888887642
Q ss_pred CCCCceEEEEEecCCCCc-chHHHHHHc---CCCCCCcEEEEEEe
Q 019753 207 HLLKGTVILIFQPAEEAG-NGAKRMMAD---GALEDVEAIFAVHV 247 (336)
Q Consensus 207 ~~l~g~I~~ift~dEE~g-~Ga~~li~~---g~~~~~d~~i~~ep 247 (336)
-..+.++.|+.+.+---- .|.+..++. .+-+.+|++|+.+.
T Consensus 261 TrakYnLlF~lt~aG~lNyqGTkkWLe~dd~~lq~nVdfaiCLdt 305 (555)
T KOG2526|consen 261 TRAKYNLLFILTAAGKLNYQGTKKWLEFDDADLQKNVDFAICLDT 305 (555)
T ss_pred cccceeEEEEEccCccccccchhhhhhcchHHHHhcccEEEEhhh
Confidence 124679999998654422 487776663 22236899998763
No 82
>cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.
Probab=90.32 E-value=11 Score=38.65 Aligned_cols=126 Identities=14% Similarity=0.112 Sum_probs=78.3
Q ss_pred chHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHhCCCeEEEec------CCceEEEEec-CC-CCCeEEEEeccCccc
Q 019753 95 ETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPL------AKTGIRAWVG-TG-GPPFVALRADMDALP 166 (336)
Q Consensus 95 ~~~~~li~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v~~~~------~~~nvia~i~-g~-~~p~I~l~~H~DtVP 166 (336)
....+-+.+.|+|++.|.--..=...++++.+.+++.|++++..+ -+-|.+.-.+ +. ..|+++..-+...=+
T Consensus 151 ~~~a~~~~~aRdL~n~P~n~~tP~~~a~~a~~l~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~~~p~lv~l~Y~g~~~ 230 (468)
T cd00433 151 EAIAEGVNLARDLVNTPANDLTPTYLAEEAKELAKELGVKVEVLDEKELEELGMGALLAVGKGSEEPPRLIVLEYKGKGA 230 (468)
T ss_pred HHHHHHHHHHHHhhcCCcccCCHHHHHHHHHHHHHhcCCEEEEEcHHHHHhCCCCceeeecccCCCCCEEEEEEECCCCC
Confidence 346677899999999997544445679999999999999988742 1234333333 33 567777776664322
Q ss_pred CCC-----ccCCcccc----ccCCeeeecCC--c-HHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCC
Q 019753 167 IQE-----AVEWEYKS----KVAGKMHACGH--D-AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEA 223 (336)
Q Consensus 167 ~~~-----~~~~pf~~----~~~G~~~g~G~--d-g~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~ 223 (336)
... ++...|++ .+++ -+..+| | ++.|+.+++++++.+.+ ++-+|..+....|=.
T Consensus 231 ~~~~i~LVGKGiTFDsGG~slKp~-~~M~~Mk~DM~GAAaVlga~~aia~l~--~~vnV~~i~~~~EN~ 296 (468)
T cd00433 231 SKKPIALVGKGITFDTGGLSLKPA-AGMDGMKYDMGGAAAVLGAMKAIAELK--LPVNVVGVLPLAENM 296 (468)
T ss_pred CCCcEEEEcCceEecCCCccccCc-cChhhccccchhHHHHHHHHHHHHHcC--CCceEEEEEEeeecC
Confidence 100 11222332 0111 112233 2 78889999999999864 677888888777754
No 83
>PTZ00412 leucyl aminopeptidase; Provisional
Probab=85.11 E-value=37 Score=35.50 Aligned_cols=126 Identities=12% Similarity=0.002 Sum_probs=73.0
Q ss_pred chHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHhCCCeEE-Eec------CCce-EEEEecCC-CCCeEEEEeccCcc
Q 019753 95 ETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYK-YPL------AKTG-IRAWVGTG-GPPFVALRADMDAL 165 (336)
Q Consensus 95 ~~~~~li~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v~-~~~------~~~n-via~i~g~-~~p~I~l~~H~DtV 165 (336)
...-+-+.+.|+|++-|.--..-...++.+.+.+.+.|++++ ... .+-| +++.=.|. ..|.++...+.=.-
T Consensus 209 ~~ia~~vn~ARdLvn~P~N~ltP~~~Ae~a~~~~~~~g~~v~~Vl~~~~l~~~gmg~llaVgkGS~~pPrli~L~Y~g~~ 288 (569)
T PTZ00412 209 NIIGHCVNEARNLGNLREDEGVPQFYAEWIKKELAPLGIKVRKVLRGEQLEGAGLNLMYNVGKGSRHEPYLVVFEYIGNP 288 (569)
T ss_pred HHHHHHHHHHHHhccCChhhcCHHHHHHHHHHHHhhcCCEEEEEEcHHHHHHCCCcceeeeeccCCCCCEEEEEEeCCCC
Confidence 345677899999999986433334568888888888999986 421 1223 44443333 45777666664110
Q ss_pred ----cCC-CccCCcccc----ccCCeeeecCC--c-HHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCC
Q 019753 166 ----PIQ-EAVEWEYKS----KVAGKMHACGH--D-AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEA 223 (336)
Q Consensus 166 ----P~~-~~~~~pf~~----~~~G~~~g~G~--d-g~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~ 223 (336)
|.. -+....|++ .+++ -+..+| | ++.|+.+++++++.+. +++-+|..+....|=.
T Consensus 289 ~~~~~iaLVGKGITFDSGGisLKP~-~~M~~MK~DMgGAAaVlga~~AiA~L--klpvnVv~iiplaENm 355 (569)
T PTZ00412 289 RSSAATALVGKGVTFDCGGLNIKPY-GSMETMHSDMMGAATVMCTLKAIAKL--QLPVNVVAAVGLAENA 355 (569)
T ss_pred CCCCcEEEEcCceEEcCCCCCCCCc-cChhhhhccchhHHHHHHHHHHHHHc--CCCeEEEEEEEhhhcC
Confidence 000 011122322 0111 012223 2 7788999999999875 4567888777777653
No 84
>KOG2597 consensus Predicted aminopeptidase of the M17 family [General function prediction only]
Probab=84.19 E-value=14 Score=38.00 Aligned_cols=130 Identities=12% Similarity=0.029 Sum_probs=83.4
Q ss_pred chHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHhCCCeEEEecC------CceEEEEec-CC-CCCeEEEEeccCccc
Q 019753 95 ETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPLA------KTGIRAWVG-TG-GPPFVALRADMDALP 166 (336)
Q Consensus 95 ~~~~~li~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v~~~~~------~~nvia~i~-g~-~~p~I~l~~H~DtVP 166 (336)
..+.+-..+.|+|...|.--..-...++++.+++...|+.++.... +-|.+..++ +. ..|.++...|.++=|
T Consensus 186 ~~~~~~~~lar~l~d~PaN~Mtp~~fae~a~~~~~~~~v~v~V~~~~~i~~~~~~~~l~V~k~s~~pP~ll~lsY~g~~~ 265 (513)
T KOG2597|consen 186 LFKAAAQNLARRLGDTPANRMTPTQFAEEAVDVLCPLGVTVEVRDEEWIEEQGMNSFLAVAKASCEPPRLLELSYKGTSG 265 (513)
T ss_pred HHHHHHHHHHHHhccCChhhcCHHHHHHHHHHhhcccCceEEEechHHHhhccccceeeeccccCCCCEEEEEEEcCCCC
Confidence 3456778899999998865444567799999999999988776421 234333333 33 578899999988865
Q ss_pred CCCc-----cCCccccc----cCC-eee-ecCCcHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCcch
Q 019753 167 IQEA-----VEWEYKSK----VAG-KMH-ACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNG 226 (336)
Q Consensus 167 ~~~~-----~~~pf~~~----~~G-~~~-g~G~dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g~G 226 (336)
..++ +...|.+- +++ .|+ .|+..++.|+++++++++.+.+ ++-++.+++.-.|-.-+|
T Consensus 266 ~~~~i~lvGKGvtfDsGGl~iK~~~~M~~mr~dm~GAA~v~~~~~a~~~l~--~~in~~~v~plcENm~sg 334 (513)
T KOG2597|consen 266 ADKTILLVGKGVTFDSGGLSIKPKTGMDGMRRDMGGAAVVLGAFRAAAQLS--LPINVHAVLPLCENMPSG 334 (513)
T ss_pred CcceEEEEecceEEecCccccccCCChhhhhhhccccHHHHHHHHHHHhcC--CCCceEEEEeeeccCCCc
Confidence 4321 22233320 111 111 2232367888999999988754 557888888877765443
No 85
>PRK00913 multifunctional aminopeptidase A; Provisional
Probab=83.77 E-value=37 Score=34.98 Aligned_cols=126 Identities=12% Similarity=0.049 Sum_probs=76.5
Q ss_pred chHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHhCCCeEEEec------CCce-EEEEecCC-CCCeEEEEeccCccc
Q 019753 95 ETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPL------AKTG-IRAWVGTG-GPPFVALRADMDALP 166 (336)
Q Consensus 95 ~~~~~li~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v~~~~------~~~n-via~i~g~-~~p~I~l~~H~DtVP 166 (336)
....+-+.+.|+|++.|.--..=...++++.+.++++|++++... .+-| +++.=.|. ..|+++..-+.-.-+
T Consensus 168 ~~~a~~~~~aRdL~n~P~n~~tP~~~a~~a~~~~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~~~prli~l~Y~g~~~ 247 (483)
T PRK00913 168 EAIAEGVNLARDLVNEPPNILTPAYLAERAKELAKEYGLEVEVLDEKEMEKLGMGALLAVGQGSANPPRLIVLEYKGGKK 247 (483)
T ss_pred HHHHHHHHHHHHhhCCChhhcCHHHHHHHHHHHHHhcCCEEEEEeHHHHHhCCCCcEEEEeccCCCCCeEEEEEECCCCC
Confidence 345677899999999997433445668899999999999988632 1334 44432333 457777666652100
Q ss_pred C--CCccCCcccc----ccCCeeeecCC--c-HHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCC
Q 019753 167 I--QEAVEWEYKS----KVAGKMHACGH--D-AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEA 223 (336)
Q Consensus 167 ~--~~~~~~pf~~----~~~G~~~g~G~--d-g~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~ 223 (336)
. --++...|++ .+++ -+..+| | ++.|+.+++++++.+. +++-+|+.+....|=.
T Consensus 248 ~i~LVGKGITFDsGG~slKp~-~~M~~MK~DM~GAAaVlga~~aia~l--kl~vnV~~v~~l~ENm 310 (483)
T PRK00913 248 PIALVGKGLTFDSGGISLKPA-AGMDEMKYDMGGAAAVLGTMRALAEL--KLPVNVVGVVAACENM 310 (483)
T ss_pred eEEEEcCceEecCCCccCCCC-cChhhcccccHhHHHHHHHHHHHHHc--CCCceEEEEEEeeccC
Confidence 0 0012223332 0111 011223 2 7888999999999985 4677888888877754
No 86
>PF00883 Peptidase_M17: Cytosol aminopeptidase family, catalytic domain; InterPro: IPR000819 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The 2 zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3KZW_L 3KQX_C 3KQZ_L 3KR4_I 3KR5_J 3T8W_C 3H8F_D 3H8G_A 3H8E_B 3IJ3_A ....
Probab=77.59 E-value=27 Score=33.87 Aligned_cols=110 Identities=13% Similarity=0.097 Sum_probs=63.9
Q ss_pred HHHHHHhhcCCCCCccHHHHHHHHHHHHHhCCCeEEEec------CCce---------------EEEEecCC---CCCeE
Q 019753 101 KSVRRTIHQNPELAFQEFETSRLLRAELDRMEIGYKYPL------AKTG---------------IRAWVGTG---GPPFV 156 (336)
Q Consensus 101 i~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v~~~~------~~~n---------------via~i~g~---~~p~I 156 (336)
+.+.|+|.+.|.--..-...++++.+.++++|++++... .+-| ++.++.+. ..++|
T Consensus 1 vn~aRdL~n~P~n~~~P~~~a~~~~~~~~~~~v~v~v~~~~~l~~~gmg~llaVg~gS~~~P~lv~l~Y~g~~~~~~~~i 80 (311)
T PF00883_consen 1 VNLARDLVNTPPNILTPETFAEYAKELAKKYGVKVEVLDEKELEKLGMGGLLAVGRGSRHPPRLVVLEYKGNGGKSKKPI 80 (311)
T ss_dssp HHHHHHHHHS-TTTSSHHHHHHHHHHHHHHCTEEEEEEEHHHHHHTT-HHHHHHHTTSSS--EEEEEEEETSTSTTSEEE
T ss_pred ChHHHhhhCCChhhcCHHHHHHHHHHHHhhcCCEEEEEeHHHHHHcCCccEeeecccCCCCCEEEEEEECCCCCCCCccE
Confidence 467899999987555556789999999999999987631 1111 22333322 12334
Q ss_pred EEEeccCcccCCCccCCccccc----cC-Cee-eecCCcHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCC
Q 019753 157 ALRADMDALPIQEAVEWEYKSK----VA-GKM-HACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAEE 222 (336)
Q Consensus 157 ~l~~H~DtVP~~~~~~~pf~~~----~~-G~~-~g~G~dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE 222 (336)
+|.|- ...|++- ++ +.+ ..+...++.|+.+++++++.+. +++-+|+.+....|=
T Consensus 81 ~LVGK----------GiTFDtGG~~lKp~~~M~~Mk~DM~GAAaV~ga~~aia~l--k~~vnV~~~l~~~EN 140 (311)
T PF00883_consen 81 ALVGK----------GITFDTGGLSLKPSGGMEGMKYDMGGAAAVLGAMRAIAKL--KLPVNVVAVLPLAEN 140 (311)
T ss_dssp EEEEE----------EEEEEE-TTSSSCSTTGGGGGGGGHHHHHHHHHHHHHHHC--T-SSEEEEEEEEEEE
T ss_pred EEEcc----------eEEEecCCccCCCCcchhhcccCcchHHHHHHHHHHHHHc--CCCceEEEEEEcccc
Confidence 44331 1222210 11 111 1122227888999999999985 456788888877764
No 87
>PRK05015 aminopeptidase B; Provisional
Probab=77.11 E-value=79 Score=32.00 Aligned_cols=122 Identities=15% Similarity=0.054 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHhC---CCeEEEec------CCce-EEEEecCC-CCCeEEEEeccCcc
Q 019753 97 VDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRM---EIGYKYPL------AKTG-IRAWVGTG-GPPFVALRADMDAL 165 (336)
Q Consensus 97 ~~~li~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~---G~~v~~~~------~~~n-via~i~g~-~~p~I~l~~H~DtV 165 (336)
+-+.+.+.|+|++.|.--..-...++...+++++. +++++... .+-+ +++.=++. ..|.++..-+-
T Consensus 99 ~~~~~~~aRdLvn~P~n~ltP~~lA~~a~~~~~~~~~~~v~v~Vl~~~~L~~~gmggilaVgrGS~~pP~lv~L~Y~--- 175 (424)
T PRK05015 99 RLKIIDWVRDTINAPAEELGPEQLAQRAADLICSVAGDAVSYRIIKGEDLREQGYMGIHTVGRGSERPPVLLALDYN--- 175 (424)
T ss_pred HHHHHHHHHHHhcCCcccCCHHHHHHHHHHHHHhhccCceEEEEeeHHHHHHCCCCceeeeeccCCCCCEEEEEEec---
Confidence 44578999999999874333345566777777776 57776532 1223 44432333 34555554442
Q ss_pred cCCCc----------cCCcccc----ccCCeeeecCC--c-HHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc
Q 019753 166 PIQEA----------VEWEYKS----KVAGKMHACGH--D-AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG 224 (336)
Q Consensus 166 P~~~~----------~~~pf~~----~~~G~~~g~G~--d-g~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g 224 (336)
|.++. +...|++ .+++ -+..+| | ++.|+++++++++.+. .++-+|..++...|=.-
T Consensus 176 ~~g~~~~~v~~aLVGKGITFDSGG~sLKps-~~M~~MK~DMgGAAaV~ga~~~a~~~--~l~~nV~~il~~aENmi 248 (424)
T PRK05015 176 PTGDPDAPVYACLVGKGITFDSGGYSIKPS-AGMDSMKSDMGGAATVTGALALAITR--GLNKRVKLFLCCAENLI 248 (424)
T ss_pred CCCCCCCCeeEEEecCceEecCCCccCCCC-cCHHHhhcchhHHHHHHHHHHHHHhc--CCCceEEEEEEecccCC
Confidence 22211 1112221 0100 012223 2 6778888888877765 46779999988887543
No 88
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=63.81 E-value=24 Score=34.98 Aligned_cols=71 Identities=23% Similarity=0.208 Sum_probs=45.1
Q ss_pred ceEEEEecCCCCCeEEEEeccCcccCCCccCCccccccCCeeeecCCcHHHHHHHHHHHHHHHcCCCCCceEEEEEecCC
Q 019753 142 TGIRAWVGTGGPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIFQPAE 221 (336)
Q Consensus 142 ~nvia~i~g~~~p~I~l~~H~DtVP~~~~~~~pf~~~~~G~~~g~G~dg~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dE 221 (336)
.|+|+.-++ .+..+++.+|.|+--.+.. +.-.++++.+.++..|+..+. ...++....|
T Consensus 179 y~~Ia~~~~-en~vv~i~AH~DHW~~G~t----------------DN~lg~~~AV~~~~~lr~~~~----~~~lv~FtAE 237 (486)
T COG4882 179 YNVIAVDGG-ENGVVLIGAHLDHWYTGFT----------------DNILGVAQAVETAGRLRGRGL----AAGLVVFTAE 237 (486)
T ss_pred EEEEEecCC-CCCceEEeechhhhhhccc----------------chhhhHHHHHHHHHHHhhcCc----ceeEEEEecc
Confidence 466665443 3679999999999875321 111456777777788876432 3444445567
Q ss_pred CCcc----------hHHHHHHc
Q 019753 222 EAGN----------GAKRMMAD 233 (336)
Q Consensus 222 E~g~----------Ga~~li~~ 233 (336)
|.|+ |++.+++.
T Consensus 238 E~g~p~~~sfyWa~GSr~~lk~ 259 (486)
T COG4882 238 EHGMPGMASFYWAAGSRGLLKE 259 (486)
T ss_pred ccCCCCCcceeecccchHHHhh
Confidence 7651 88888775
No 89
>COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
Probab=61.68 E-value=2e+02 Score=29.69 Aligned_cols=124 Identities=15% Similarity=0.114 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHhCC-CeEEEec-------CCceEEEEecCC-CCCeEEE---EeccC
Q 019753 96 TVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRME-IGYKYPL-------AKTGIRAWVGTG-GPPFVAL---RADMD 163 (336)
Q Consensus 96 ~~~~li~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G-~~v~~~~-------~~~nvia~i~g~-~~p~I~l---~~H~D 163 (336)
..-+-+.+.|+|++.|.--..=.+.++. .+.|.+.+ ++++..+ +-+.+++.=.|. ..|+++. +++=+
T Consensus 165 ai~~~v~~aRdLvN~P~n~l~P~~la~~-a~~la~~~~v~veVl~~~~l~~~gmg~llaVg~GS~~~Prlivl~y~g~~~ 243 (485)
T COG0260 165 AIAEGVNLARDLVNTPANILTPEELAER-AELLAKLGGVKVEVLDEKDLEKLGMGALLAVGKGSARPPRLIVLEYNGKGK 243 (485)
T ss_pred HHHHHHHHHHHHhhCCcccCCHHHHHHH-HHHHhhcCCceEEEecHHHHHHcCCceeeeeccCCCCCCeEEEEEcCCCCC
Confidence 4556789999999999743333345666 66676665 7776632 122344433333 3455443 23322
Q ss_pred -cccCC-CccCCcccc----ccCCeeeecCC--c-HHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCC
Q 019753 164 -ALPIQ-EAVEWEYKS----KVAGKMHACGH--D-AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEA 223 (336)
Q Consensus 164 -tVP~~-~~~~~pf~~----~~~G~~~g~G~--d-g~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~ 223 (336)
-.|.. -++...|++ .+++ -+...| | ++.|+.++++.++.+. +++-+|..+...-|=.
T Consensus 244 ~~~~iaLVGKGitFDsGGisiKp~-~~M~~MK~DMgGAAaV~g~~~a~a~l--~l~vnv~~vl~~~ENm 309 (485)
T COG0260 244 AKKPIALVGKGITFDSGGISIKPA-AGMDTMKYDMGGAAAVLGAMRALAEL--KLPVNVVGVLPAVENM 309 (485)
T ss_pred CCceEEEEcCceeecCCCcccCCc-cchhhhhcccchHHHHHHHHHHHHHc--CCCceEEEEEeeeccC
Confidence 22210 112233332 1111 122233 2 7788899999999886 4667888887777653
No 90
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=35.03 E-value=2.9e+02 Score=29.25 Aligned_cols=88 Identities=14% Similarity=0.248 Sum_probs=54.9
Q ss_pred HHHHHHHhCCCeEEEec---------CCceEEEEecCC---CCCeEEEEeccCcccCCCccCCccccccCCeeeecCCcH
Q 019753 123 LLRAELDRMEIGYKYPL---------AKTGIRAWVGTG---GPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDA 190 (336)
Q Consensus 123 ~l~~~L~~~G~~v~~~~---------~~~nvia~i~g~---~~p~I~l~~H~DtVP~~~~~~~pf~~~~~G~~~g~G~dg 190 (336)
+....+++.|.+++... .+.||++.+... ....+++. ||.+..+ | +.++
T Consensus 93 ~~~~~~q~FGl~t~~~n~~~~P~e~y~G~NvyGilRAPRgdgtEsivl~-----vP~~~~~---------~-----~~~~ 153 (617)
T KOG3566|consen 93 WAEVSMQEFGLETHTQNYSNGPFEEYSGENVYGILRAPRGDGTESIVLV-----VPYGRSS---------G-----SNSA 153 (617)
T ss_pred HHHHHHHHhCccccccCccCCchhhcCCceEEEEEecCCCCCcceEEEE-----EecccCC---------C-----cchh
Confidence 46667777799876532 157999988642 23567775 6632111 1 1135
Q ss_pred HHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCcchHHHHHH
Q 019753 191 HVAMLIGAAKILKSREHLLKGTVILIFQPAEEAGNGAKRMMA 232 (336)
Q Consensus 191 ~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g~Ga~~li~ 232 (336)
.++-+++.++++++. .-...||+++|+-++=. |.+..++
T Consensus 154 ~v~l~lsla~~f~r~-~yWsKDII~v~~d~~~~--g~~AwLe 192 (617)
T KOG3566|consen 154 SVALLLSLADYFSRW-VYWSKDIIFVFTDGPAL--GLDAWLE 192 (617)
T ss_pred HHHHHHHHHHHhcCC-eeecccEEEEEeCCccc--cHHHHHH
Confidence 677777778888764 45788999999977433 4444443
No 91
>PRK02256 putative aminopeptidase 1; Provisional
Probab=33.50 E-value=1.6e+02 Score=30.19 Aligned_cols=58 Identities=10% Similarity=0.020 Sum_probs=36.6
Q ss_pred HHHhhcCCCCCccHHHHHHHHHHHHHhCCCeE-EE-e---c--------CCceEEEEe-cCCC--CCeEEEEeccCcc
Q 019753 104 RRTIHQNPELAFQEFETSRLLRAELDRMEIGY-KY-P---L--------AKTGIRAWV-GTGG--PPFVALRADMDAL 165 (336)
Q Consensus 104 ~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~~v-~~-~---~--------~~~nvia~i-~g~~--~p~I~l~~H~DtV 165 (336)
+.-|-+.|+ ++.+++++.+.|++.||.- .. . . .+..++|-. ++.+ ...-+..+|+|.=
T Consensus 32 ~~Fl~~spt----p~Hav~~~~~~L~~~GF~el~e~~~l~~g~kyy~~r~~ssliAf~ig~~~~~~g~~iv~aHtDsP 105 (462)
T PRK02256 32 KDFLSKCKT----EREAVKEIIELAEEKGFINLEEIIGLKPGDKVYAVNRGKSVALAVIGKEPLEEGLNIIGAHIDSP 105 (462)
T ss_pred HHHHHcCCC----HHHHHHHHHHHHHHcCCeecccccccCCCCEEEEEcCCCEEEEEEeCCCCCCCceEEEEEecCCC
Confidence 333345665 4889999999999999973 11 1 1 123466643 3332 2356889999984
No 92
>PF06675 DUF1177: Protein of unknown function (DUF1177); InterPro: IPR009561 This family consists of several hypothetical archaeal and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=31.21 E-value=4.6e+02 Score=24.81 Aligned_cols=89 Identities=18% Similarity=0.330 Sum_probs=56.1
Q ss_pred CCCeEEEEeccCcccCCCccCCccccccCCeeeecCCcHHHHHHHHHHHHH--HHcCCCCCceEEEEEe--cCCCCc---
Q 019753 152 GPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKIL--KSREHLLKGTVILIFQ--PAEEAG--- 224 (336)
Q Consensus 152 ~~p~I~l~~H~DtVP~~~~~~~pf~~~~~G~~~g~G~dg~~A~~L~Aa~~L--~~~~~~l~g~I~~ift--~dEE~g--- 224 (336)
..|++.+.|-+--+-.. +..-| .-.+.||.++++..|++.+ ++.+..++|+|++.=- |+--+-
T Consensus 30 ~aptlGIiGRLGgigAR--------P~~iG--lVSDaDGAi~ala~a~KL~~M~~kGd~L~GDVii~ThIcp~Apt~PH~ 99 (276)
T PF06675_consen 30 SAPTLGIIGRLGGIGAR--------PERIG--LVSDADGAIAALAAALKLLDMQAKGDVLPGDVIITTHICPDAPTRPHD 99 (276)
T ss_pred CCCeeEEEeeccccccc--------cccee--eeecCchHHHHHHHHHHHHHHHHcCCccCCcEEEEEecCCCCCCCCCC
Confidence 46888888777665421 11112 2234567777777777764 4668889999988743 332221
Q ss_pred --------chHHHHHHcCCCCCCcEEEEEEeCCC
Q 019753 225 --------NGAKRMMADGALEDVEAIFAVHVSHE 250 (336)
Q Consensus 225 --------~Ga~~li~~g~~~~~d~~i~~ept~~ 250 (336)
-+...|.+...-...|+++....+-+
T Consensus 100 PvpFM~sPv~~~~~n~~EV~p~mdAILSiDTTKG 133 (276)
T PF06675_consen 100 PVPFMGSPVDMATMNRHEVDPEMDAILSIDTTKG 133 (276)
T ss_pred CcccccCccCHHHHHHhhcCcccceEEEEecCCC
Confidence 15667777666566899998876643
No 93
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=31.21 E-value=1.1e+02 Score=31.54 Aligned_cols=72 Identities=15% Similarity=0.270 Sum_probs=47.5
Q ss_pred CceEEEEecCC---CCCeEEEEeccCcccCCCccCCccccccCCeeeecCCcHHHHHHHHHHHHHHHcCCCCCceEEEEE
Q 019753 141 KTGIRAWVGTG---GPPFVALRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKSREHLLKGTVILIF 217 (336)
Q Consensus 141 ~~nvia~i~g~---~~p~I~l~~H~DtVP~~~~~~~pf~~~~~G~~~g~G~dg~~A~~L~Aa~~L~~~~~~l~g~I~~if 217 (336)
+.|+++.+... +...+++..-.++.. +.. ..++++.+++.++++++. .-+..||+|++
T Consensus 3 G~nvy~i~rapR~d~tEaivl~~~~~~~~--------------~~~----n~~~v~l~lal~~~~~~~-~~wsKDii~l~ 63 (504)
T PF04114_consen 3 GTNVYGILRAPRGDGTEAIVLVVPWRDSD--------------GEY----NAGGVALALALARYFRRQ-SYWSKDIIFLF 63 (504)
T ss_pred ceEEEEEEecCCCCCceeEEEEEecCCCC--------------ccc----chhhHHHHHHHHHHhhhc-hhhhccEEEEe
Confidence 56888887542 235788875544332 110 124678889999999976 35789999999
Q ss_pred ecCCCCcchHHHHHHc
Q 019753 218 QPAEEAGNGAKRMMAD 233 (336)
Q Consensus 218 t~dEE~g~Ga~~li~~ 233 (336)
+.+|. .|.+..+++
T Consensus 64 ~~~~~--~g~~awl~~ 77 (504)
T PF04114_consen 64 TDDEL--AGMQAWLEA 77 (504)
T ss_pred cCCcc--hHHHHHHHH
Confidence 87664 366666653
No 94
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=30.62 E-value=32 Score=33.40 Aligned_cols=70 Identities=16% Similarity=0.188 Sum_probs=43.8
Q ss_pred HHHhhcccCCC-----------CCCcccccccCCCCccccccCCccCCCCCccc-ccCcCCC--C-CCCccccchHHhHH
Q 019753 21 ILLQVESLTPA-----------NNDYAFFDINSLGSSTTAATTPALKPDGGSVK-NRSSTSR--K-PYSSCEVWSRACSK 85 (336)
Q Consensus 21 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~-~~~~~~~~~~~~~~ 85 (336)
-.+++||..|+ +.+|+- -..+|+|++|.|-+.-++.++++- |.-.-+. - .+-+..|+++.+..
T Consensus 127 HWLAiEGVQPaIpqNP~l~d~~V~~~~~--k~T~g~~~~a~t~a~q~~n~v~~~~n~E~KplvkHvLsKELq~YF~kvis 204 (450)
T COG5095 127 HWLAIEGVQPAIPQNPILLDKPVAKWAS--KDTLGVMPGASTAAYQARNGVTSMENAELKPLVKHVLSKELQMYFDKVIS 204 (450)
T ss_pred hhhhhcccCccCCCCCCccccccccccc--cCccccCcCcchHHHHHhcCCCCcccccccHHHHHHHHHHHHHHHHHHHH
Confidence 35789999998 456664 446899999888777777666542 2222111 1 33456667666666
Q ss_pred HHHHHhc
Q 019753 86 EVMELAR 92 (336)
Q Consensus 86 ~i~~~~~ 92 (336)
.++++.+
T Consensus 205 al~dEs~ 211 (450)
T COG5095 205 ALLDESD 211 (450)
T ss_pred HHHHHHH
Confidence 6666555
No 95
>COG5230 Uncharacterized conserved protein [Function unknown]
Probab=27.93 E-value=1.7e+02 Score=25.72 Aligned_cols=58 Identities=7% Similarity=-0.004 Sum_probs=46.4
Q ss_pred CccccchHHhHHHHHHHhcCcchHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHhCCC
Q 019753 74 SSCEVWSRACSKEVMELARRPETVDWLKSVRRTIHQNPELAFQEFETSRLLRAELDRMEI 133 (336)
Q Consensus 74 ~~~~~~~~~~~~~i~~~~~~~~~~~~li~l~~~Lv~iPs~sg~E~~~~~~l~~~L~~~G~ 133 (336)
...|+++.++...|..+++ .+..+..+++++-.+.-++-.+|..++-+++.++++++-
T Consensus 20 d~lp~Y~~d~i~~i~~E~~--~ldr~~~eilqeasq~g~~~d~~~~~~y~~m~~~~erNk 77 (194)
T COG5230 20 DPLPPYRRDEIKAIEGENE--HLDRRMEEILQEASQAGSGIDEELSVNYVMMKYFKERNK 77 (194)
T ss_pred cCCcchhHHHHHHHHHHHH--HHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhH
Confidence 3478898888888999997 776788888887777667667788888888888887653
No 96
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=27.38 E-value=75 Score=32.07 Aligned_cols=64 Identities=17% Similarity=0.154 Sum_probs=37.5
Q ss_pred CeEEEEeccCcccC-CCccCCccc-----cccCC-eee-ecCCc-HHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc
Q 019753 154 PFVALRADMDALPI-QEAVEWEYK-----SKVAG-KMH-ACGHD-AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG 224 (336)
Q Consensus 154 p~I~l~~H~DtVP~-~~~~~~pf~-----~~~~G-~~~-g~G~d-g~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g 224 (336)
..+.|.||+|.||. +..+...|. ..++| ++. ..|.| -.++++++. |. ..+.++...++.+||++
T Consensus 62 ~~~~L~a~~d~V~~i~~~sh~Dt~~d~~~~~v~~~~l~~~~Gad~i~~~~~~a~---L~----~~~~P~~~~~t~~~ei~ 134 (414)
T COG2195 62 VPAVLQAHLDMVPEIGFISHHDTVPDPIGPNVNPQILKATLGADNIGLAIGLAV---LS----PEHFPLEVLLTGDEEIT 134 (414)
T ss_pred eeEEeeccccccccccccccccccccccccccCCceeeeccCcchhhhhhHHhh---cC----cccCCceeeeecceEEe
Confidence 46779999999994 444444443 23333 333 34543 233333322 21 13578999999999986
No 97
>PRK02256 putative aminopeptidase 1; Provisional
Probab=25.61 E-value=1.1e+02 Score=31.39 Aligned_cols=39 Identities=23% Similarity=0.245 Sum_probs=25.2
Q ss_pred eeeecCCc--HHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCc
Q 019753 182 KMHACGHD--AHVAMLIGAAKILKSREHLLKGTVILIFQPAEEAG 224 (336)
Q Consensus 182 ~~~g~G~d--g~~A~~L~Aa~~L~~~~~~l~g~I~~ift~dEE~g 224 (336)
.+.+.+.| .++.+++.+++.+. .+...++++++..||.|
T Consensus 253 fI~s~rLDNr~~~~~~leal~~~~----~~~~~~~~~~~dqEEVG 293 (462)
T PRK02256 253 LIGAYGQDDRVCAYTSLEALLELE----NPEKTAVVLLVDKEEIG 293 (462)
T ss_pred eeeccccccHHHHHHHHHHHHhcc----cCCCeEEEEEEcccccC
Confidence 44555555 44455555544332 35678999999999999
No 98
>PF13153 DUF3985: Protein of unknown function (DUF3985)
Probab=25.52 E-value=57 Score=21.70 Aligned_cols=21 Identities=43% Similarity=0.632 Sum_probs=17.3
Q ss_pred chhhhhhhhhHHHHHHHhhcc
Q 019753 7 SVAFKILSFNLIIIILLQVES 27 (336)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~ 27 (336)
-||.|||..-|+|+.+.+.|+
T Consensus 21 yvalkilai~lii~~ive~g~ 41 (44)
T PF13153_consen 21 YVALKILAILLIIFLIVEFGS 41 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHcc
Confidence 378899999888888888775
Done!