Query 019755
Match_columns 336
No_of_seqs 125 out of 1110
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 04:17:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019755.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019755hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 3.1E-81 6.6E-86 597.3 20.7 309 23-335 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 2.3E-50 5E-55 366.2 21.9 250 19-327 42-305 (305)
3 PF03198 Glyco_hydro_72: Gluca 99.1 1.7E-09 3.7E-14 102.6 14.9 193 22-264 29-252 (314)
4 PF07745 Glyco_hydro_53: Glyco 99.1 9.5E-09 2.1E-13 99.3 20.0 245 37-334 26-330 (332)
5 COG3867 Arabinogalactan endo-1 98.6 1.7E-06 3.8E-11 81.2 15.0 245 37-334 65-389 (403)
6 PRK10150 beta-D-glucuronidase; 98.5 5E-05 1.1E-09 79.4 26.0 257 22-333 294-585 (604)
7 smart00633 Glyco_10 Glycosyl h 98.1 0.0003 6.5E-09 65.6 18.0 212 60-333 20-251 (254)
8 PF00150 Cellulase: Cellulase 98.0 0.00041 8.8E-09 64.4 17.9 127 21-151 9-170 (281)
9 PF11790 Glyco_hydro_cc: Glyco 97.6 0.0031 6.8E-08 58.4 15.8 164 106-329 64-232 (239)
10 TIGR03356 BGL beta-galactosida 97.0 0.2 4.3E-06 50.5 21.5 45 38-82 57-120 (427)
11 PF02836 Glyco_hydro_2_C: Glyc 96.9 0.059 1.3E-06 51.2 16.2 96 22-117 17-132 (298)
12 PRK10340 ebgA cryptic beta-D-g 93.9 3.1 6.7E-05 46.6 17.7 95 22-119 336-452 (1021)
13 PF02449 Glyco_hydro_42: Beta- 89.6 3.2 7E-05 40.8 10.6 82 38-119 13-140 (374)
14 COG3934 Endo-beta-mannanase [C 87.2 2.2 4.7E-05 43.4 7.5 182 94-333 125-312 (587)
15 PRK09936 hypothetical protein; 85.4 5.8 0.00012 37.9 9.0 119 21-139 20-170 (296)
16 cd02875 GH18_chitobiase Chitob 84.8 9.4 0.0002 37.5 10.7 133 49-200 56-191 (358)
17 PF01229 Glyco_hydro_39: Glyco 84.6 34 0.00074 35.0 15.1 251 40-332 45-352 (486)
18 PF00232 Glyco_hydro_1: Glycos 83.4 0.36 7.8E-06 48.9 0.1 280 38-332 61-442 (455)
19 PF03662 Glyco_hydro_79n: Glyc 83.1 11 0.00025 36.5 10.1 172 60-265 113-300 (319)
20 PRK13511 6-phospho-beta-galact 75.9 4.5 9.8E-05 41.3 5.2 46 38-83 57-121 (469)
21 PLN02998 beta-glucosidase 73.4 4.7 0.0001 41.5 4.6 46 38-83 85-149 (497)
22 PLN02814 beta-glucosidase 72.5 4.8 0.0001 41.5 4.4 46 38-83 80-144 (504)
23 PRK09525 lacZ beta-D-galactosi 70.3 59 0.0013 36.7 12.5 97 22-118 352-464 (1027)
24 cd00598 GH18_chitinase-like Th 70.1 19 0.00041 31.6 7.3 83 60-143 53-142 (210)
25 PF00331 Glyco_hydro_10: Glyco 69.9 60 0.0013 31.3 11.1 218 59-333 62-313 (320)
26 PLN02849 beta-glucosidase 68.8 6.8 0.00015 40.4 4.6 46 38-83 82-146 (503)
27 PF12876 Cellulase-like: Sugar 68.2 12 0.00027 28.8 4.9 47 104-152 7-63 (88)
28 PLN03059 beta-galactosidase; P 68.0 1E+02 0.0023 33.9 13.3 114 39-154 63-223 (840)
29 COG4782 Uncharacterized protei 66.8 22 0.00047 35.2 7.3 58 227-287 124-185 (377)
30 PF02449 Glyco_hydro_42: Beta- 65.6 56 0.0012 32.0 10.2 56 123-198 207-262 (374)
31 PRK09589 celA 6-phospho-beta-g 59.9 17 0.00036 37.3 5.5 46 38-83 70-135 (476)
32 PRK15014 6-phospho-beta-glucos 58.0 15 0.00032 37.7 4.7 46 38-83 72-137 (477)
33 cd02874 GH18_CFLE_spore_hydrol 57.8 32 0.0007 32.7 6.8 83 59-143 48-138 (313)
34 PF02055 Glyco_hydro_30: O-Gly 57.4 97 0.0021 32.0 10.5 85 67-151 166-278 (496)
35 PRK09593 arb 6-phospho-beta-gl 55.9 23 0.00051 36.2 5.7 46 38-83 76-141 (478)
36 PF00925 GTP_cyclohydro2: GTP 54.8 15 0.00032 32.2 3.5 37 41-77 132-168 (169)
37 PF05990 DUF900: Alpha/beta hy 54.4 33 0.00072 31.5 6.0 41 244-287 43-87 (233)
38 PRK09852 cryptic 6-phospho-bet 51.1 29 0.00062 35.6 5.5 46 38-83 74-139 (474)
39 cd02872 GH18_chitolectin_chito 50.5 1E+02 0.0022 29.9 9.1 120 63-200 62-192 (362)
40 cd06598 GH31_transferase_CtsZ 50.1 2.4E+02 0.0052 27.0 11.8 71 123-201 22-96 (317)
41 smart00481 POLIIIAc DNA polyme 49.8 68 0.0015 22.9 5.9 44 35-78 15-63 (67)
42 PF14587 Glyco_hydr_30_2: O-Gl 47.5 3E+02 0.0066 27.5 12.6 93 60-155 108-228 (384)
43 PF04909 Amidohydro_2: Amidohy 46.4 41 0.0009 30.3 5.3 89 129-261 85-175 (273)
44 PRK00393 ribA GTP cyclohydrola 46.1 32 0.0007 30.8 4.4 36 41-76 134-169 (197)
45 PF14488 DUF4434: Domain of un 46.1 1.6E+02 0.0035 25.6 8.7 79 59-141 68-151 (166)
46 TIGR00505 ribA GTP cyclohydrol 45.5 34 0.00074 30.5 4.5 33 41-73 131-163 (191)
47 PRK14332 (dimethylallyl)adenos 45.0 2.4E+02 0.0052 28.6 11.0 129 108-260 261-397 (449)
48 PF01055 Glyco_hydro_31: Glyco 44.9 1.3E+02 0.0028 30.1 9.0 134 123-305 41-178 (441)
49 PF01301 Glyco_hydro_35: Glyco 44.9 2.9E+02 0.0064 26.6 11.8 110 38-152 27-180 (319)
50 cd06545 GH18_3CO4_chitinase Th 43.7 63 0.0014 29.7 6.2 81 60-143 50-133 (253)
51 PF13547 GTA_TIM: GTA TIM-barr 43.3 42 0.00092 32.1 4.8 86 105-204 17-115 (299)
52 KOG1412 Aspartate aminotransfe 42.6 88 0.0019 30.6 6.8 140 27-186 188-370 (410)
53 TIGR01579 MiaB-like-C MiaB-lik 42.3 1.3E+02 0.0029 29.8 8.6 61 122-201 270-330 (414)
54 TIGR01233 lacG 6-phospho-beta- 40.2 1.1E+02 0.0024 31.3 7.7 46 38-83 56-120 (467)
55 PF14871 GHL6: Hypothetical gl 39.4 70 0.0015 26.8 5.2 43 37-79 2-67 (132)
56 COG0621 MiaB 2-methylthioadeni 38.6 1.8E+02 0.004 29.5 8.8 64 119-201 274-337 (437)
57 PF06117 DUF957: Enterobacteri 38.2 73 0.0016 23.4 4.3 42 88-141 10-55 (65)
58 PRK14334 (dimethylallyl)adenos 36.6 4E+02 0.0088 26.7 11.1 73 108-199 247-327 (440)
59 COG4213 XylF ABC-type xylose t 36.3 81 0.0018 30.7 5.6 74 59-151 175-249 (341)
60 PRK14327 (dimethylallyl)adenos 34.6 3.4E+02 0.0073 28.2 10.3 74 108-200 322-403 (509)
61 PRK12485 bifunctional 3,4-dihy 34.3 49 0.0011 32.8 4.0 35 41-76 331-365 (369)
62 cd00641 GTP_cyclohydro2 GTP cy 33.9 65 0.0014 28.7 4.4 37 41-77 133-169 (193)
63 PRK14338 (dimethylallyl)adenos 33.5 3.8E+02 0.0083 27.1 10.4 61 121-200 286-346 (459)
64 PRK14019 bifunctional 3,4-dihy 32.4 56 0.0012 32.4 4.0 36 41-77 328-363 (367)
65 PRK09318 bifunctional 3,4-dihy 32.4 64 0.0014 32.2 4.4 38 41-78 320-357 (387)
66 PF14903 WG_beta_rep: WG conta 31.7 32 0.00069 21.0 1.5 16 320-335 1-16 (35)
67 PRK09314 bifunctional 3,4-dihy 31.7 63 0.0014 31.7 4.2 33 41-73 301-334 (339)
68 COG1433 Uncharacterized conser 31.1 1.1E+02 0.0023 25.5 4.9 40 38-77 55-94 (121)
69 PRK14336 (dimethylallyl)adenos 31.1 3.6E+02 0.0079 26.9 9.7 60 122-200 256-315 (418)
70 PRK08815 GTP cyclohydrolase; P 30.8 70 0.0015 31.8 4.4 38 41-78 305-342 (375)
71 cd02876 GH18_SI-CLP Stabilin-1 30.7 4.4E+02 0.0095 25.0 9.9 83 60-143 55-148 (318)
72 KOG0626 Beta-glucosidase, lact 30.3 1.6E+02 0.0035 30.6 6.9 81 245-332 402-498 (524)
73 smart00636 Glyco_18 Glycosyl h 30.0 2.1E+02 0.0046 27.1 7.6 79 62-141 57-142 (334)
74 PRK09311 bifunctional 3,4-dihy 29.8 75 0.0016 31.9 4.5 37 41-77 339-375 (402)
75 PLN02831 Bifunctional GTP cycl 29.5 74 0.0016 32.4 4.4 37 41-77 373-409 (450)
76 PRK14339 (dimethylallyl)adenos 29.1 5.9E+02 0.013 25.4 11.9 61 121-200 261-321 (420)
77 PRK14042 pyruvate carboxylase 28.7 3.4E+02 0.0074 28.8 9.2 40 40-79 101-146 (596)
78 PRK09319 bifunctional 3,4-dihy 28.6 79 0.0017 33.1 4.5 38 41-78 343-380 (555)
79 cd02871 GH18_chitinase_D-like 28.2 2.4E+02 0.0051 26.9 7.5 78 61-139 65-146 (312)
80 cd07937 DRE_TIM_PC_TC_5S Pyruv 28.2 3.6E+02 0.0079 25.2 8.7 91 38-138 94-191 (275)
81 KOG0078 GTP-binding protein SE 27.5 1.2E+02 0.0026 27.6 4.9 62 51-118 62-128 (207)
82 cd04743 NPD_PKS 2-Nitropropane 27.0 5.1E+02 0.011 25.2 9.5 58 20-78 55-112 (320)
83 COG2159 Predicted metal-depend 26.4 4E+02 0.0086 25.3 8.6 95 129-265 113-209 (293)
84 PRK03941 NTPase; Reviewed 25.6 4.3E+02 0.0092 23.4 8.0 61 70-140 1-61 (174)
85 PRK13347 coproporphyrinogen II 25.6 1.4E+02 0.0029 30.3 5.5 95 38-144 152-282 (453)
86 PLN00196 alpha-amylase; Provis 25.5 2.7E+02 0.0058 28.2 7.6 56 22-77 28-113 (428)
87 cd06601 GH31_lyase_GLase GLase 25.3 3.7E+02 0.0081 26.1 8.3 28 271-305 104-131 (332)
88 PRK14328 (dimethylallyl)adenos 25.1 2.7E+02 0.0058 28.0 7.6 61 121-200 278-338 (439)
89 COG0807 RibA GTP cyclohydrolas 23.5 1.4E+02 0.003 26.9 4.6 40 41-80 133-172 (193)
90 COG1453 Predicted oxidoreducta 23.3 77 0.0017 31.5 3.1 38 242-282 188-225 (391)
91 TIGR01125 MiaB-like tRNA modif 23.3 6.4E+02 0.014 25.1 9.9 61 122-201 267-327 (430)
92 PF13377 Peripla_BP_3: Peripla 22.9 3E+02 0.0065 22.3 6.4 91 42-153 2-104 (160)
93 PF00834 Ribul_P_3_epim: Ribul 22.9 5.6E+02 0.012 23.0 8.5 92 37-144 69-166 (201)
94 KOG2775 Metallopeptidase [Gene 22.7 1.5E+02 0.0033 28.7 4.8 107 123-259 111-220 (397)
95 PRK14337 (dimethylallyl)adenos 22.2 7.8E+02 0.017 24.7 10.3 74 108-200 259-340 (446)
96 cd07944 DRE_TIM_HOA_like 4-hyd 22.2 6.1E+02 0.013 23.6 8.9 87 40-138 87-180 (266)
97 PF13721 SecD-TM1: SecD export 22.1 3.1E+02 0.0066 21.8 5.9 52 3-54 12-65 (101)
98 COG2730 BglC Endoglucanase [Ca 22.1 6.6E+02 0.014 25.0 9.6 102 38-141 76-218 (407)
99 COG3250 LacZ Beta-galactosidas 20.7 5.3E+02 0.012 28.5 9.1 110 22-135 302-424 (808)
100 PRK14330 (dimethylallyl)adenos 20.6 4.8E+02 0.01 26.1 8.3 75 108-201 250-332 (434)
101 cd06599 GH31_glycosidase_Aec37 20.6 3.4E+02 0.0074 25.9 7.0 70 124-201 28-99 (317)
102 COG0159 TrpA Tryptophan syntha 20.0 2.2E+02 0.0049 26.9 5.4 31 109-139 228-264 (265)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=3.1e-81 Score=597.33 Aligned_cols=309 Identities=51% Similarity=0.897 Sum_probs=254.8
Q ss_pred eeEEecCCCCCCCCHHHHHHHHhcCCCCEEEEcCCChHHHHHHhcCCCEEEEecCCCCChhhhhcHHHHHHHHHhhcccc
Q 019755 23 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEALEALRGSNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQNY 102 (336)
Q Consensus 23 ~Gi~Y~~~~~~~~~~~~v~~ll~~~~~~~VRlY~~d~~vl~A~~~~gi~V~lGv~~~~~~~~~~~~~~a~~wv~~~v~~~ 102 (336)
+|||||+.++++|+++++++++|+++|++||||++|+++|+|++++||.|++||+|+++++++.++.+|..|++++|.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEeccccCCCCcchHHHHHHHHHHHHHHHhCCCCCceeEeeeeecccccccCCCCCcccccccccchhHHHH
Q 019755 103 ANNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVIT 182 (336)
Q Consensus 103 ~~~~~i~~I~VGNE~l~~~~~~~~Ll~~i~~vr~aL~~~gl~~~i~VtT~~~~~~~~~s~pPs~~~f~~~~~~~i~~~~~ 182 (336)
+|..+|+.|+||||++...... .|+++|+++|++|++.||+++|||+|++.++++..+||||+|.|++++.++|+++++
T Consensus 81 ~~~~~i~~i~VGnEv~~~~~~~-~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~l~ 159 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGTDNA-YLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPLLK 159 (310)
T ss_dssp TTTSEEEEEEEEES-TCCSGGG-GHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHHHH
T ss_pred CcccceeeeecccccccCccce-eeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhhhhHHHH
Confidence 9999999999999999754333 999999999999999999988999999999999999999999999998889999999
Q ss_pred HhhhcCCCceeccCCCcccCCC-CCccccccccccCCCccCCCCCcchhHHHHHHHHHHHHHHHhCCCCCcEEEeeeccC
Q 019755 183 FLNENKSPLLVNLYPYFAIDGN-RQISLDYALFRSQQPVVSDPPLSYRNLFDAQLDATYAALEKAGGGSLDIVISESGWP 261 (336)
Q Consensus 183 fl~~~~d~~~vN~yPff~~~~~-~~~~~~~a~f~~~~~~~~d~~~~y~n~fda~~d~~~~al~~~g~~~~~vvVtEtGWP 261 (336)
||.+++||+|+|+||||.+..+ ..++++||+|++..... |++++|+||||+|+|++++||+++|+++++|+|||||||
T Consensus 160 fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~-D~~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ETGWP 238 (310)
T PF00332_consen 160 FLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVV-DGGLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGETGWP 238 (310)
T ss_dssp HHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SE-ETTEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE---
T ss_pred HhhccCCCceeccchhhhccCCcccCCccccccccccccc-ccchhhhHHHHHHHHHHHHHHHHhCCCCceeEEeccccc
Confidence 9999999999999999999988 89999999999876666 889999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCceEEEEEEecCCCcCCCccccceeeecCCCCceeeccc
Q 019755 262 TAGGDGALTNVDNARTYNNNLIQHVKQGSPKKPGRPIETYIFAMFDEKDKQGAEIERHWGLFAPDKQPKYQVNF 335 (336)
Q Consensus 262 S~G~~~a~as~~na~~y~~~~~~~~~~gtp~~p~~~~~~~~F~~fDe~wK~~~~~E~~wGlf~~d~~~Ky~l~~ 335 (336)
|+|+. .++.+||+.|++++++++.+|||+||+.++++||||+|||+||+++++|+|||||++||+|||+|+|
T Consensus 239 s~G~~--~a~~~nA~~~~~nl~~~~~~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~~f 310 (310)
T PF00332_consen 239 SAGDP--GATPENAQAYNQNLIKHVLKGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDLDF 310 (310)
T ss_dssp SSSST--TCSHHHHHHHHHHHHHHCCGBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS----
T ss_pred cCCCC--CCCcchhHHHHHHHHHHHhCCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCCCC
Confidence 99995 8999999999999999999999999999999999999999999987799999999999999999987
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-50 Score=366.18 Aligned_cols=250 Identities=20% Similarity=0.347 Sum_probs=204.8
Q ss_pred CCCeeeEEecCCCCCCCCH--HHH---HHHHhcCCCCEEEEcCCC----hHHHHHHhcCCCEEEEecCCCCChhhhhcHH
Q 019755 19 TTAQIGVCYGMLGDNLPSK--PDV---IALYNQNNIRRMRLYDPN----KEALEALRGSNIEVMLGLPNDKLQPIASNQA 89 (336)
Q Consensus 19 ~~~~~Gi~Y~~~~~~~~~~--~~v---~~ll~~~~~~~VRlY~~d----~~vl~A~~~~gi~V~lGv~~~~~~~~~~~~~ 89 (336)
+.++.+|||+|+.+++.|| +|+ +++|++.+. .||+|++| .+|++|+...|+||+||||..+..+-+-+.
T Consensus 42 a~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~-~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~~~~- 119 (305)
T COG5309 42 ASGFLAFTLGPYNDDGTCKSADQVASDLELLASYTH-SIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIHDAVEK- 119 (305)
T ss_pred cccccceeccccCCCCCCcCHHHHHhHHHHhccCCc-eEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchhhhHHH-
Confidence 4568999999999998887 454 467777643 99999987 579999999999999999997654432222
Q ss_pred HHHHHHHhhccccCCCceEEEEEeccccCCCCc-chHHHHHHHHHHHHHHHhCCCCCceeEeeeeecccccccCCCCCcc
Q 019755 90 EANTWVQNNVQNYANNVKFKYIAVGNEAKPGDN-FAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGS 168 (336)
Q Consensus 90 ~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~~~-~~~~Ll~~i~~vr~aL~~~gl~~~i~VtT~~~~~~~~~s~pPs~~~ 168 (336)
+ +..++.++...+.|++|+||||+|+|++ ++++|+++|.+||++|+.+|+. .||+|+++|.+|.+
T Consensus 120 t----il~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~--gpV~T~dsw~~~~~-------- 185 (305)
T COG5309 120 T----ILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYD--GPVTTVDSWNVVIN-------- 185 (305)
T ss_pred H----HHHHHhccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCC--CceeecccceeeeC--------
Confidence 2 3467778878899999999999999987 8999999999999999999996 59999999988875
Q ss_pred cccccccchhHHHHHhhhcCCCceeccCCCcccCCCCCccccccccccCCCccCCCCCcchhHHHHHHHHHHHHHHHhCC
Q 019755 169 FKQAYRPILDPVITFLNENKSPLLVNLYPYFAIDGNRQISLDYALFRSQQPVVSDPPLSYRNLFDAQLDATYAALEKAGG 248 (336)
Q Consensus 169 f~~~~~~~i~~~~~fl~~~~d~~~vN~yPff~~~~~~~~~~~~a~f~~~~~~~~d~~~~y~n~fda~~d~~~~al~~~g~ 248 (336)
+|. |+++.|++|+|.||||+.+.. ..+.+ .++-.|++-++.+ +|.
T Consensus 186 -----np~-------l~~~SDfia~N~~aYwd~~~~----------------a~~~~----~f~~~q~e~vqsa---~g~ 230 (305)
T COG5309 186 -----NPE-------LCQASDFIAANAHAYWDGQTV----------------ANAAG----TFLLEQLERVQSA---CGT 230 (305)
T ss_pred -----ChH-------Hhhhhhhhhcccchhccccch----------------hhhhh----HHHHHHHHHHHHh---cCC
Confidence 222 678899999999999998632 12222 3444556666654 353
Q ss_pred CCCcEEEeeeccCCCCC--CCCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCceEEEEEEecCCCcCCC--ccccceeeec
Q 019755 249 GSLDIVISESGWPTAGG--DGALTNVDNARTYNNNLIQHVKQGSPKKPGRPIETYIFAMFDEKDKQGA--EIERHWGLFA 324 (336)
Q Consensus 249 ~~~~vvVtEtGWPS~G~--~~a~as~~na~~y~~~~~~~~~~gtp~~p~~~~~~~~F~~fDe~wK~~~--~~E~~wGlf~ 324 (336)
+|+++|+||||||.|. .+++||++||+.|+++++|.++ +.+.++|+||+|||+||..+ ++|+|||+++
T Consensus 231 -~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~-------~~G~d~fvfeAFdd~WK~~~~y~VEkywGv~~ 302 (305)
T COG5309 231 -KKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALR-------SCGYDVFVFEAFDDDWKADGSYGVEKYWGVLS 302 (305)
T ss_pred -CccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhh-------ccCccEEEeeeccccccCccccchhhceeeec
Confidence 4999999999999998 3899999999999999999886 34899999999999999864 6999999999
Q ss_pred CCC
Q 019755 325 PDK 327 (336)
Q Consensus 325 ~d~ 327 (336)
.|+
T Consensus 303 s~~ 305 (305)
T COG5309 303 SDR 305 (305)
T ss_pred cCC
Confidence 875
No 3
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.11 E-value=1.7e-09 Score=102.55 Aligned_cols=193 Identities=22% Similarity=0.271 Sum_probs=100.3
Q ss_pred eeeEEecCCCCCC-------C-CH---HHHHHHHhcCCCCEEEEcCCCh-----HHHHHHhcCCCEEEEecCCCCChhhh
Q 019755 22 QIGVCYGMLGDNL-------P-SK---PDVIALYNQNNIRRMRLYDPNK-----EALEALRGSNIEVMLGLPNDKLQPIA 85 (336)
Q Consensus 22 ~~Gi~Y~~~~~~~-------~-~~---~~v~~ll~~~~~~~VRlY~~d~-----~vl~A~~~~gi~V~lGv~~~~~~~~~ 85 (336)
..||.|.|-++.. . .+ ..++.+||+.|++.||+|+.|+ .-+.++++.||-|++.+.... .++.
T Consensus 29 ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p~-~sI~ 107 (314)
T PF03198_consen 29 IKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTPN-GSIN 107 (314)
T ss_dssp EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BTT-BS--
T ss_pred EeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCCC-cccc
Confidence 3899999987621 1 11 2366799999999999999873 688999999999999998652 2222
Q ss_pred h-cH------HHHHHHHHhhccccCCCceEEEEEeccccCCCCc---chHHHHHHHHHHHHHHHhCCCCCceeEeeeeec
Q 019755 86 S-NQ------AEANTWVQNNVQNYANNVKFKYIAVGNEAKPGDN---FAQYLVPAMRNIQNAINGANLGSQIKVSTAIEF 155 (336)
Q Consensus 86 ~-~~------~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~~~---~~~~Ll~~i~~vr~aL~~~gl~~~i~VtT~~~~ 155 (336)
+ ++ ....+ ...-|..+..=+++-+..+|||++.... .+..+-.+++++|+-+++.++.. |||+-+-.-
T Consensus 108 r~~P~~sw~~~l~~~-~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~-IPVGYsaaD 185 (314)
T PF03198_consen 108 RSDPAPSWNTDLLDR-YFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRS-IPVGYSAAD 185 (314)
T ss_dssp TTS------HHHHHH-HHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE--
T ss_pred CCCCcCCCCHHHHHH-HHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCC-CceeEEccC
Confidence 1 11 11111 1222333322378999999999998642 57888999999999999999875 999965321
Q ss_pred ccccccCCCCCcccccccccchhHHHHHhh-----hcCCCceeccCCCcccCCCCCccccccccccCCCccCCCCCcchh
Q 019755 156 GALEVSSPPSAGSFKQAYRPILDPVITFLN-----ENKSPLLVNLYPYFAIDGNRQISLDYALFRSQQPVVSDPPLSYRN 230 (336)
Q Consensus 156 ~~~~~s~pPs~~~f~~~~~~~i~~~~~fl~-----~~~d~~~vN~yPff~~~~~~~~~~~~a~f~~~~~~~~d~~~~y~n 230 (336)
. ...-.++.++|. +..|++++|.|-|=.. ..|+.+ .|..
T Consensus 186 -~----------------~~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~WCg~----------Stf~~S---------Gy~~ 229 (314)
T PF03198_consen 186 -D----------------AEIRQDLANYLNCGDDDERIDFFGLNSYEWCGD----------STFETS---------GYDR 229 (314)
T ss_dssp ------------------TTTHHHHHHHTTBTT-----S-EEEEE----SS------------HHHH---------SHHH
T ss_pred -C----------------hhHHHHHHHHhcCCCcccccceeeeccceecCC----------Cccccc---------cHHH
Confidence 0 111234556665 3668999999886432 123211 1333
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEeeeccCCCC
Q 019755 231 LFDAQLDATYAALEKAGGGSLDIVISESGWPTAG 264 (336)
Q Consensus 231 ~fda~~d~~~~al~~~g~~~~~vvVtEtGWPS~G 264 (336)
+.+ .. .++ .+||+.+|.|=-+..
T Consensus 230 l~~--------~f--~~y-~vPvffSEyGCn~~~ 252 (314)
T PF03198_consen 230 LTK--------EF--SNY-SVPVFFSEYGCNTVT 252 (314)
T ss_dssp HHH--------HH--TT--SS-EEEEEE---SSS
T ss_pred HHH--------Hh--hCC-CCCeEEcccCCCCCC
Confidence 321 11 244 589999999986544
No 4
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.10 E-value=9.5e-09 Score=99.28 Aligned_cols=245 Identities=15% Similarity=0.269 Sum_probs=126.8
Q ss_pred HHHHHHHHhcCCCCEEEEcC---------CC-hHHH---HHHhcCCCEEEEecCCCCC---------h-hhhh-cHHHH-
Q 019755 37 KPDVIALYNQNNIRRMRLYD---------PN-KEAL---EALRGSNIEVMLGLPNDKL---------Q-PIAS-NQAEA- 91 (336)
Q Consensus 37 ~~~v~~ll~~~~~~~VRlY~---------~d-~~vl---~A~~~~gi~V~lGv~~~~~---------~-~~~~-~~~~a- 91 (336)
..+++++||..|++.||+=- +| ..++ +.+++.||+|+|-.--++. + ++.. +.++.
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 46789999999998888752 12 2333 4467899999999865431 1 1221 22221
Q ss_pred ---HHHHHhhccccC-CCceEEEEEeccccCCC-----C--cchHHHHHHHHHHHHHHHhCCCCCceeEeeeeecccccc
Q 019755 92 ---NTWVQNNVQNYA-NNVKFKYIAVGNEAKPG-----D--NFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEV 160 (336)
Q Consensus 92 ---~~wv~~~v~~~~-~~~~i~~I~VGNE~l~~-----~--~~~~~Ll~~i~~vr~aL~~~gl~~~i~VtT~~~~~~~~~ 160 (336)
.+..++-+.... -+...+.|.||||.-.. + ...+.+...++...+++++.+- +++|-.-.. ....
T Consensus 106 ~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p--~~kV~lH~~-~~~~- 181 (332)
T PF07745_consen 106 KAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDP--NIKVMLHLA-NGGD- 181 (332)
T ss_dssp HHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS--TSEEEEEES--TTS-
T ss_pred HHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEC-CCCc-
Confidence 112211122111 24668899999996432 1 2567888888888888887543 355543211 0000
Q ss_pred cCCCCCcccccccccchhHHHHHhh---hcCCCceeccCCCcccCCCCCccccccccccCCCccCCCCCcchhHHHHHHH
Q 019755 161 SSPPSAGSFKQAYRPILDPVITFLN---ENKSPLLVNLYPYFAIDGNRQISLDYALFRSQQPVVSDPPLSYRNLFDAQLD 237 (336)
Q Consensus 161 s~pPs~~~f~~~~~~~i~~~~~fl~---~~~d~~~vN~yPff~~~~~~~~~~~~a~f~~~~~~~~d~~~~y~n~fda~~d 237 (336)
....+-..+.|. -.-|+++++.||||... + +-+...++
T Consensus 182 -------------~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~------l--------------------~~l~~~l~ 222 (332)
T PF07745_consen 182 -------------NDLYRWFFDNLKAAGVDFDVIGLSYYPFWHGT------L--------------------EDLKNNLN 222 (332)
T ss_dssp -------------HHHHHHHHHHHHHTTGG-SEEEEEE-STTST-------H--------------------HHHHHHHH
T ss_pred -------------hHHHHHHHHHHHhcCCCcceEEEecCCCCcch------H--------------------HHHHHHHH
Confidence 011112222232 35599999999999862 0 11222333
Q ss_pred HHHHHHHHhCCCCCcEEEeeeccCCCCC------C---------CCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCceEEE
Q 019755 238 ATYAALEKAGGGSLDIVISESGWPTAGG------D---------GALTNVDNARTYNNNLIQHVKQGSPKKPGRPIETYI 302 (336)
Q Consensus 238 ~~~~al~~~g~~~~~vvVtEtGWPS~G~------~---------~a~as~~na~~y~~~~~~~~~~gtp~~p~~~~~~~~ 302 (336)
.+. ++. +|+|+|.|||||.... + +-.+|++.|+.|++++++.+.. .|. +.+.-+||
T Consensus 223 ~l~---~ry---~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~-~p~--~~g~GvfY 293 (332)
T PF07745_consen 223 DLA---SRY---GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKN-VPN--GGGLGVFY 293 (332)
T ss_dssp HHH---HHH---T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHT-S----TTEEEEEE
T ss_pred HHH---HHh---CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHH-hcc--CCeEEEEe
Confidence 322 233 4799999999999822 1 1135899999999999998862 221 23677887
Q ss_pred EEE-ecCCC-----cCCCccccceeeecCCCCceeecc
Q 019755 303 FAM-FDEKD-----KQGAEIERHWGLFAPDKQPKYQVN 334 (336)
Q Consensus 303 F~~-fDe~w-----K~~~~~E~~wGlf~~d~~~Ky~l~ 334 (336)
-|. .-..+ ..|...|.. +||+.+|++--+|+
T Consensus 294 WeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~sl~ 330 (332)
T PF07745_consen 294 WEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNALPSLD 330 (332)
T ss_dssp E-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-GGGG
T ss_pred eccccccCCcccccCCCCCcccc-ccCCCCCCCchHhh
Confidence 762 22211 122234544 89999998876664
No 5
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.58 E-value=1.7e-06 Score=81.19 Aligned_cols=245 Identities=18% Similarity=0.304 Sum_probs=134.8
Q ss_pred HHHHHHHHhcCCCCEEEEc------CCC-----------h---HHHHHHhcCCCEEEEecCCCC---ChhhhhcHHHHH-
Q 019755 37 KPDVIALYNQNNIRRMRLY------DPN-----------K---EALEALRGSNIEVMLGLPNDK---LQPIASNQAEAN- 92 (336)
Q Consensus 37 ~~~v~~ll~~~~~~~VRlY------~~d-----------~---~vl~A~~~~gi~V~lGv~~~~---~~~~~~~~~~a~- 92 (336)
..+..++||..|++.|||- +.| . ++-+.+++.||||++-.--++ ++.-+..+.+-+
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~ 144 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWEN 144 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHHhhh
Confidence 3556799999999988874 332 1 334446689999999875543 121111111000
Q ss_pred ---HHHHhhcccc--------C-CCceEEEEEeccccCCC-----Cc--chHHHHHHHHHHHHHHHhCCCCCceeEeeee
Q 019755 93 ---TWVQNNVQNY--------A-NNVKFKYIAVGNEAKPG-----DN--FAQYLVPAMRNIQNAINGANLGSQIKVSTAI 153 (336)
Q Consensus 93 ---~wv~~~v~~~--------~-~~~~i~~I~VGNE~l~~-----~~--~~~~Ll~~i~~vr~aL~~~gl~~~i~VtT~~ 153 (336)
+-++.+|-.| . -+..+.-|-||||.-.. |+ ....+...++.--++++... ++|+|-.-.
T Consensus 145 l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~--p~ikv~lHl 222 (403)
T COG3867 145 LNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVS--PTIKVALHL 222 (403)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcC--CCceEEEEe
Confidence 0022222222 1 13557789999998531 22 23455555555555555533 356665422
Q ss_pred ecccccccCCCCCcccccccccchhHHHHHhhh---cCCCceeccCCCcccCCCCCccccccccccCCCccCCCCCcchh
Q 019755 154 EFGALEVSSPPSAGSFKQAYRPILDPVITFLNE---NKSPLLVNLYPYFAIDGNRQISLDYALFRSQQPVVSDPPLSYRN 230 (336)
Q Consensus 154 ~~~~~~~s~pPs~~~f~~~~~~~i~~~~~fl~~---~~d~~~vN~yPff~~~~~~~~~~~~a~f~~~~~~~~d~~~~y~n 230 (336)
.+.-.+ +.|+ -+.|-|.+ .-|.++.-.||||...-+ |
T Consensus 223 -----a~g~~n--~~y~--------~~fd~ltk~nvdfDVig~SyYpyWhgtl~-------------------------n 262 (403)
T COG3867 223 -----AEGENN--SLYR--------WIFDELTKRNVDFDVIGSSYYPYWHGTLN-------------------------N 262 (403)
T ss_pred -----cCCCCC--chhh--------HHHHHHHHcCCCceEEeeeccccccCcHH-------------------------H
Confidence 221111 2222 22333333 237899999999997521 1
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEeeecc--------------CCCCCC-CCCCCHHHHHHHHHHHHHHHhhCCCCCCC
Q 019755 231 LFDAQLDATYAALEKAGGGSLDIVISESGW--------------PTAGGD-GALTNVDNARTYNNNLIQHVKQGSPKKPG 295 (336)
Q Consensus 231 ~fda~~d~~~~al~~~g~~~~~vvVtEtGW--------------PS~G~~-~a~as~~na~~y~~~~~~~~~~gtp~~p~ 295 (336)
+- -.++.+.. .-+|+|+|.||+. |+.+.. +-..++.-|.+|.+++++.+. ..|..
T Consensus 263 L~-~nl~dia~------rY~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~-nvp~~-- 332 (403)
T COG3867 263 LT-TNLNDIAS------RYHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVK-NVPKS-- 332 (403)
T ss_pred HH-hHHHHHHH------HhcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHH-hCCCC--
Confidence 10 11111111 1357999999999 555542 335678899999999999885 23322
Q ss_pred CCceEEEEE-------------------EecCCCcCCCccccceeeecCCCCceeecc
Q 019755 296 RPIETYIFA-------------------MFDEKDKQGAEIERHWGLFAPDKQPKYQVN 334 (336)
Q Consensus 296 ~~~~~~~F~-------------------~fDe~wK~~~~~E~~wGlf~~d~~~Ky~l~ 334 (336)
++.-+|+.| .-.|+|+.|..++.. -||+.+|.|-.+|+
T Consensus 333 ~GlGvFYWEp~wipv~~g~gwat~~~~~y~~e~w~~gsavdNq-aLfdf~G~~LPSl~ 389 (403)
T COG3867 333 NGLGVFYWEPAWIPVVLGSGWATSYAAKYDPENWGEGSAVDNQ-ALFDFNGHPLPSLN 389 (403)
T ss_pred CceEEEEecccceeccCCCccccchhhccCcccccCCCccchh-hhhhccCCcCcchh
Confidence 255566655 123455554334433 68888888877664
No 6
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.53 E-value=5e-05 Score=79.37 Aligned_cols=257 Identities=15% Similarity=0.120 Sum_probs=140.7
Q ss_pred eeeEEecCCCC---CCCCHHH---HHHHHhcCCCCEEEEcC--CChHHHHHHhcCCCEEEEecCCC--------------
Q 019755 22 QIGVCYGMLGD---NLPSKPD---VIALYNQNNIRRMRLYD--PNKEALEALRGSNIEVMLGLPND-------------- 79 (336)
Q Consensus 22 ~~Gi~Y~~~~~---~~~~~~~---v~~ll~~~~~~~VRlY~--~d~~vl~A~~~~gi~V~lGv~~~-------------- 79 (336)
..|+|+-.... ...+++. +++++|..|++.||+-. .++..+.+|-+.||-|+.=++.-
T Consensus 294 lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~ 373 (604)
T PRK10150 294 FKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGN 373 (604)
T ss_pred EEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccc
Confidence 46777643221 1233433 46789999999999943 25789999999999998644211
Q ss_pred -CChhhh------hcHHHHHHHHHhhccccCCCceEEEEEeccccCCCCcchHHHHHHHHHHHHHHHhCCCCCceeEeee
Q 019755 80 -KLQPIA------SNQAEANTWVQNNVQNYANNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINGANLGSQIKVSTA 152 (336)
Q Consensus 80 -~~~~~~------~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~~~~~~~Ll~~i~~vr~aL~~~gl~~~i~VtT~ 152 (336)
+.+.+. ...+...+-+++.|.++...-.|..=++|||.-...+.....+..| .+.+++.- ++=+|+.+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~~~~~~~~~~~l---~~~~k~~D--ptR~vt~~ 448 (604)
T PRK10150 374 KPKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPASREQGAREYFAPL---AELTRKLD--PTRPVTCV 448 (604)
T ss_pred cccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCccchhHHHHHHHH---HHHHHhhC--CCCceEEE
Confidence 001111 0111222224555666544346778999999743222223333333 33333332 22367765
Q ss_pred eecccccccCCCCCcccccccccchhHHHHHhhhcCCCceeccCCCcccCCCCCccccccccccCCCccCCCCCcchhHH
Q 019755 153 IEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAIDGNRQISLDYALFRSQQPVVSDPPLSYRNLF 232 (336)
Q Consensus 153 ~~~~~~~~s~pPs~~~f~~~~~~~i~~~~~fl~~~~d~~~vN~yPff~~~~~~~~~~~~a~f~~~~~~~~d~~~~y~n~f 232 (336)
..+. . +|. ... +.+..|+++.|.|+=|-.... +. + . ....+
T Consensus 449 ~~~~---~--~~~--------~~~-------~~~~~Dv~~~N~Y~~wy~~~~-~~--~--~--------------~~~~~ 489 (604)
T PRK10150 449 NVMF---A--TPD--------TDT-------VSDLVDVLCLNRYYGWYVDSG-DL--E--T--------------AEKVL 489 (604)
T ss_pred eccc---C--Ccc--------ccc-------ccCcccEEEEcccceecCCCC-CH--H--H--------------HHHHH
Confidence 4211 0 010 000 223457788998763321100 00 0 0 00112
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeeeccCCCCC----CCCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCceEEEEEEecC
Q 019755 233 DAQLDATYAALEKAGGGSLDIVISESGWPTAGG----DGALTNVDNARTYNNNLIQHVKQGSPKKPGRPIETYIFAMFDE 308 (336)
Q Consensus 233 da~~d~~~~al~~~g~~~~~vvVtEtGWPS~G~----~~a~as~~na~~y~~~~~~~~~~gtp~~p~~~~~~~~F~~fDe 308 (336)
+..+.... + .+ +||++++|.|+.+.-+ ....-|.+.|..|++...+.+. ++|. -+-.|+..+||-
T Consensus 490 ~~~~~~~~----~-~~-~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~----~~p~-~~G~~iW~~~D~ 558 (604)
T PRK10150 490 EKELLAWQ----E-KL-HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFD----RVPA-VVGEQVWNFADF 558 (604)
T ss_pred HHHHHHHH----H-hc-CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHh----cCCc-eEEEEEEeeecc
Confidence 22222111 1 12 7899999999876432 1224478899999998877665 2343 566889999996
Q ss_pred CCcCCC--ccccceeeecCCCCceeec
Q 019755 309 KDKQGA--EIERHWGLFAPDKQPKYQV 333 (336)
Q Consensus 309 ~wK~~~--~~E~~wGlf~~d~~~Ky~l 333 (336)
....+. --..+.||++.||+||-..
T Consensus 559 ~~~~g~~~~~g~~~Gl~~~dr~~k~~~ 585 (604)
T PRK10150 559 ATSQGILRVGGNKKGIFTRDRQPKSAA 585 (604)
T ss_pred CCCCCCcccCCCcceeEcCCCCChHHH
Confidence 654331 1235889999999999654
No 7
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.10 E-value=0.0003 Score=65.64 Aligned_cols=212 Identities=17% Similarity=0.115 Sum_probs=114.7
Q ss_pred HHHHHHhcCCCEEEE--ecCCCCChhhhhc------HHHHHHHHHhhccccCCCceEEEEEeccccCCCCc------chH
Q 019755 60 EALEALRGSNIEVML--GLPNDKLQPIASN------QAEANTWVQNNVQNYANNVKFKYIAVGNEAKPGDN------FAQ 125 (336)
Q Consensus 60 ~vl~A~~~~gi~V~l--Gv~~~~~~~~~~~------~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~~~------~~~ 125 (336)
.+++.+++.||+|-- -+|....+.+..+ .++..+.+.+.+..| ...|...-|.||++..+. ...
T Consensus 20 ~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~~~~~~~~~~~~~i~~v~~ry--~g~i~~wdV~NE~~~~~~~~~~~~~w~ 97 (254)
T smart00633 20 AIVNFAKENGIKVRGHTLVWHSQTPDWVFNLSKETLLARLENHIKTVVGRY--KGKIYAWDVVNEALHDNGSGLRRSVWY 97 (254)
T ss_pred HHHHHHHHCCCEEEEEEEeecccCCHhhhcCCHHHHHHHHHHHHHHHHHHh--CCcceEEEEeeecccCCCcccccchHH
Confidence 467778888888632 3576555554432 344556666666666 457899999999986431 111
Q ss_pred HHH--HHHHHHHHHHHhCCCCCceeEeeeeecccccccCCCCCcccccccccchhHHHHHhhhc---CCCceeccCCCcc
Q 019755 126 YLV--PAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNEN---KSPLLVNLYPYFA 200 (336)
Q Consensus 126 ~Ll--~~i~~vr~aL~~~gl~~~i~VtT~~~~~~~~~s~pPs~~~f~~~~~~~i~~~~~fl~~~---~d~~~vN~yPff~ 200 (336)
..+ .+|...-+..++.. +++++-.-+ .++.. ++ .-...+..+++.|.+. .|-+++..|-+.+
T Consensus 98 ~~~G~~~i~~af~~ar~~~--P~a~l~~Nd-y~~~~---~~-------~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~ 164 (254)
T smart00633 98 QILGEDYIEKAFRYAREAD--PDAKLFYND-YNTEE---PN-------AKRQAIYELVKKLKAKGVPIDGIGLQSHLSLG 164 (254)
T ss_pred HhcChHHHHHHHHHHHHhC--CCCEEEEec-cCCcC---cc-------HHHHHHHHHHHHHHHCCCccceeeeeeeecCC
Confidence 112 33444444444333 234544322 11110 00 0011233555555443 3444443332110
Q ss_pred cCCCCCccccccccccCCCccCCCCCcchhHHHHHHHHHHHHHHHhCCCCCcEEEeeeccCCCCCCCCCCCHHHHHHHHH
Q 019755 201 IDGNRQISLDYALFRSQQPVVSDPPLSYRNLFDAQLDATYAALEKAGGGSLDIVISESGWPTAGGDGALTNVDNARTYNN 280 (336)
Q Consensus 201 ~~~~~~~~~~~a~f~~~~~~~~d~~~~y~n~fda~~d~~~~al~~~g~~~~~vvVtEtGWPS~G~~~a~as~~na~~y~~ 280 (336)
. + + .+.+...|++++--+++|+|||.+-|..+ +.+.|+.+++
T Consensus 165 ~----------------------~-----~-----~~~~~~~l~~~~~~g~pi~iTE~dv~~~~------~~~~qA~~~~ 206 (254)
T smart00633 165 S----------------------P-----N-----IAEIRAALDRFASLGLEIQITELDISGYP------NPQAQAADYE 206 (254)
T ss_pred C----------------------C-----C-----HHHHHHHHHHHHHcCCceEEEEeecCCCC------cHHHHHHHHH
Confidence 0 0 1 12233334444334789999999999753 3478899999
Q ss_pred HHHHHHhhCCCCCCCCCceEEEEEEecC-CCcCCCccccceeeecCCCCceeec
Q 019755 281 NLIQHVKQGSPKKPGRPIETYIFAMFDE-KDKQGAEIERHWGLFAPDKQPKYQV 333 (336)
Q Consensus 281 ~~~~~~~~gtp~~p~~~~~~~~F~~fDe-~wK~~~~~E~~wGlf~~d~~~Ky~l 333 (336)
.++..+.+ .| . ...+++..+.|. .|.+ +.+-|||+.|++||..+
T Consensus 207 ~~l~~~~~-~p---~-v~gi~~Wg~~d~~~W~~----~~~~~L~d~~~~~kpa~ 251 (254)
T smart00633 207 EVFKACLA-HP---A-VTGVTVWGVTDKYSWLD----GGAPLLFDANYQPKPAY 251 (254)
T ss_pred HHHHHHHc-CC---C-eeEEEEeCCccCCcccC----CCCceeECCCCCCChhh
Confidence 99988852 12 1 234555555553 4543 24679999999999765
No 8
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.05 E-value=0.00041 Score=64.37 Aligned_cols=127 Identities=15% Similarity=0.104 Sum_probs=80.9
Q ss_pred CeeeEEecCCCCCCCCHHHHHHHHhcCCCCEEEEcCC-------------C-------hHHHHHHhcCCCEEEEecCCCC
Q 019755 21 AQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDP-------------N-------KEALEALRGSNIEVMLGLPNDK 80 (336)
Q Consensus 21 ~~~Gi~Y~~~~~~~~~~~~v~~ll~~~~~~~VRlY~~-------------d-------~~vl~A~~~~gi~V~lGv~~~~ 80 (336)
...|+|-. +.+.. ..+++++.+++.|++.|||.-. + ..+++++++.||+|++-+....
T Consensus 9 ~~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~ 86 (281)
T PF00150_consen 9 NWRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAP 86 (281)
T ss_dssp EEEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEEST
T ss_pred Eeeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 35677766 22111 5678899999999999999631 1 2588889999999999887630
Q ss_pred ----ChhhhhcHHHHHHHHH---hhcc-ccCCCceEEEEEeccccCCCCc-------chHHHHHHHHHHHHHHHhCCCCC
Q 019755 81 ----LQPIASNQAEANTWVQ---NNVQ-NYANNVKFKYIAVGNEAKPGDN-------FAQYLVPAMRNIQNAINGANLGS 145 (336)
Q Consensus 81 ----~~~~~~~~~~a~~wv~---~~v~-~~~~~~~i~~I~VGNE~l~~~~-------~~~~Ll~~i~~vr~aL~~~gl~~ 145 (336)
............+|+. +.+. .|.....|.++-+.||+..... ....+.+.++.+-.++++.+-.
T Consensus 87 ~w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~- 165 (281)
T PF00150_consen 87 GWANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPN- 165 (281)
T ss_dssp TCSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSS-
T ss_pred cccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCc-
Confidence 0111111122222222 2333 3324456889999999987532 2477889999999999998865
Q ss_pred ceeEee
Q 019755 146 QIKVST 151 (336)
Q Consensus 146 ~i~VtT 151 (336)
.+|..
T Consensus 166 -~~i~~ 170 (281)
T PF00150_consen 166 -HLIIV 170 (281)
T ss_dssp -SEEEE
T ss_pred -ceeec
Confidence 34443
No 9
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=97.61 E-value=0.0031 Score=58.40 Aligned_cols=164 Identities=13% Similarity=0.124 Sum_probs=96.2
Q ss_pred ceEEEEEeccccCCCCc---chHHHHHHHHHHHHHHHhCCCCCceeEeeeeecccccccCCCCCcccccccccchhHHHH
Q 019755 106 VKFKYIAVGNEAKPGDN---FAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVIT 182 (336)
Q Consensus 106 ~~i~~I~VGNE~l~~~~---~~~~Ll~~i~~vr~aL~~~gl~~~i~VtT~~~~~~~~~s~pPs~~~f~~~~~~~i~~~~~ 182 (336)
..++.|..=||+=..++ ++++.+...++....|+.. .++++.+..-..-. . +|+. .+.|.+.++
T Consensus 64 ~~~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~~----~~~l~sPa~~~~~~-~-~~~g-------~~Wl~~F~~ 130 (239)
T PF11790_consen 64 PGSKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRSP----GVKLGSPAVAFTNG-G-TPGG-------LDWLSQFLS 130 (239)
T ss_pred cCccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhcC----CcEEECCeecccCC-C-CCCc-------cHHHHHHHH
Confidence 46778888899866432 6777777777777777643 37777664311000 0 0110 123333333
Q ss_pred Hhh--hcCCCceeccCCCcccCCCCCccccccccccCCCccCCCCCcchhHHHHHHHHHHHHHHHhCCCCCcEEEeeecc
Q 019755 183 FLN--ENKSPLLVNLYPYFAIDGNRQISLDYALFRSQQPVVSDPPLSYRNLFDAQLDATYAALEKAGGGSLDIVISESGW 260 (336)
Q Consensus 183 fl~--~~~d~~~vN~yPff~~~~~~~~~~~~a~f~~~~~~~~d~~~~y~n~fda~~d~~~~al~~~g~~~~~vvVtEtGW 260 (336)
-.. ...|++.+|.| ... + .-|...++.++ ++.| +||+|||.|+
T Consensus 131 ~~~~~~~~D~iavH~Y---~~~----~----------------------~~~~~~i~~~~---~~~~---kPIWITEf~~ 175 (239)
T PF11790_consen 131 ACARGCRVDFIAVHWY---GGD----A----------------------DDFKDYIDDLH---NRYG---KPIWITEFGC 175 (239)
T ss_pred hcccCCCccEEEEecC---CcC----H----------------------HHHHHHHHHHH---HHhC---CCEEEEeecc
Confidence 221 25677777766 110 0 11222333333 3433 7999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCceEEEEEEecCCCcCCCccccceeeecCCCCc
Q 019755 261 PTAGGDGALTNVDNARTYNNNLIQHVKQGSPKKPGRPIETYIFAMFDEKDKQGAEIERHWGLFAPDKQP 329 (336)
Q Consensus 261 PS~G~~~a~as~~na~~y~~~~~~~~~~gtp~~p~~~~~~~~F~~fDe~wK~~~~~E~~wGlf~~d~~~ 329 (336)
...+ ...+.+++..|++..+.++.+ ++. --.++||...+ .+ ......-.|++.+|++
T Consensus 176 ~~~~---~~~~~~~~~~fl~~~~~~ld~----~~~-VeryawF~~~~-~~---~~~~~~~~L~~~~G~l 232 (239)
T PF11790_consen 176 WNGG---SQGSDEQQASFLRQALPWLDS----QPY-VERYAWFGFMN-DG---SGVNPNSALLDADGSL 232 (239)
T ss_pred cCCC---CCCCHHHHHHHHHHHHHHHhc----CCC-eeEEEeccccc-cc---CCCccccccccCCCCc
Confidence 8722 267889999999999999962 222 34588888333 22 2346666788878765
No 10
>TIGR03356 BGL beta-galactosidase.
Probab=96.95 E-value=0.2 Score=50.48 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCCCEEEEcC------------CC-------hHHHHHHhcCCCEEEEecCCCCCh
Q 019755 38 PDVIALYNQNNIRRMRLYD------------PN-------KEALEALRGSNIEVMLGLPNDKLQ 82 (336)
Q Consensus 38 ~~v~~ll~~~~~~~VRlY~------------~d-------~~vl~A~~~~gi~V~lGv~~~~~~ 82 (336)
.+++++++..|++++|+== .+ .+++..+.+.||++++.+..-+++
T Consensus 57 ~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P 120 (427)
T TIGR03356 57 EEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLP 120 (427)
T ss_pred HHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCcc
Confidence 5678999999999998631 12 368899999999999999665544
No 11
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.87 E-value=0.059 Score=51.22 Aligned_cols=96 Identities=16% Similarity=0.097 Sum_probs=56.0
Q ss_pred eeeEEecCCCCCC---CCHHH---HHHHHhcCCCCEEEEcCC--ChHHHHHHhcCCCEEEEecCCCCC---hhh------
Q 019755 22 QIGVCYGMLGDNL---PSKPD---VIALYNQNNIRRMRLYDP--NKEALEALRGSNIEVMLGLPNDKL---QPI------ 84 (336)
Q Consensus 22 ~~Gi~Y~~~~~~~---~~~~~---v~~ll~~~~~~~VRlY~~--d~~vl~A~~~~gi~V~lGv~~~~~---~~~------ 84 (336)
..|+|+....... .++++ .++++|..|++.||+..- ++..+.+|-+.||-|+.-++.... ...
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 5799988754332 33433 457899999999999643 479999999999999987765110 000
Q ss_pred ---hhcHHHHHHHHHhhccccCCCceEEEEEecccc
Q 019755 85 ---ASNQAEANTWVQNNVQNYANNVKFKYIAVGNEA 117 (336)
Q Consensus 85 ---~~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~ 117 (336)
....+...+-+++.|..+...-.|..=++|||.
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 011122333345566655433456678899999
No 12
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=93.89 E-value=3.1 Score=46.59 Aligned_cols=95 Identities=16% Similarity=0.039 Sum_probs=59.0
Q ss_pred eeeEEecCCCCC---CCCHHH---HHHHHhcCCCCEEEEcCC--ChHHHHHHhcCCCEEEEecCCC--------------
Q 019755 22 QIGVCYGMLGDN---LPSKPD---VIALYNQNNIRRMRLYDP--NKEALEALRGSNIEVMLGLPND-------------- 79 (336)
Q Consensus 22 ~~Gi~Y~~~~~~---~~~~~~---v~~ll~~~~~~~VRlY~~--d~~vl~A~~~~gi~V~lGv~~~-------------- 79 (336)
..|+|+-..... ..++++ +++++|+.|++.||+-.- ++..++.|-+.||-|+--+...
T Consensus 336 lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~ 415 (1021)
T PRK10340 336 LHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRIT 415 (1021)
T ss_pred EEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCccccccccccc
Confidence 468886544221 223433 567999999999998642 4688999999999998754321
Q ss_pred CChhhhhcHHHHHHHHHhhccccCCCceEEEEEeccccCC
Q 019755 80 KLQPIASNQAEANTWVQNNVQNYANNVKFKYIAVGNEAKP 119 (336)
Q Consensus 80 ~~~~~~~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~ 119 (336)
+.+.+. ++..+-+.+.|.++...-.|..=++|||.-.
T Consensus 416 ~~p~~~---~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~ 452 (1021)
T PRK10340 416 DDPQWE---KVYVDRIVRHIHAQKNHPSIIIWSLGNESGY 452 (1021)
T ss_pred CCHHHH---HHHHHHHHHHHHhCCCCCEEEEEECccCccc
Confidence 111111 1122224455655543346778889999844
No 13
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=89.65 E-value=3.2 Score=40.76 Aligned_cols=82 Identities=15% Similarity=0.245 Sum_probs=52.7
Q ss_pred HHHHHHHhcCCCCEEEEcCC------------C----hHHHHHHhcCCCEEEEecCCCCChhhh----------------
Q 019755 38 PDVIALYNQNNIRRMRLYDP------------N----KEALEALRGSNIEVMLGLPNDKLQPIA---------------- 85 (336)
Q Consensus 38 ~~v~~ll~~~~~~~VRlY~~------------d----~~vl~A~~~~gi~V~lGv~~~~~~~~~---------------- 85 (336)
++++++++..|++.|||-.. | ..+|+.+++.||+|+|+++....+.+-
T Consensus 13 ~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~~ 92 (374)
T PF02449_consen 13 EEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGRR 92 (374)
T ss_dssp HHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTSB
T ss_pred HHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCCc
Confidence 56788999999999998432 1 368888999999999999744322210
Q ss_pred -----------hc---HHHHHHHHHhhccccCCCceEEEEEeccccCC
Q 019755 86 -----------SN---QAEANTWVQNNVQNYANNVKFKYIAVGNEAKP 119 (336)
Q Consensus 86 -----------~~---~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~ 119 (336)
.+ .+.+.+.+...+..|...-.|.++.|+||.-.
T Consensus 93 ~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 93 RGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred CccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 00 12344444444455644457999999999865
No 14
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=87.22 E-value=2.2 Score=43.40 Aligned_cols=182 Identities=16% Similarity=0.145 Sum_probs=98.7
Q ss_pred HHHhhccccCCCceEEEEEeccccCCCC-cchHHHHHHHHHHHHHHHhCCCCCceeEeeeeecccccccCCCCCcccccc
Q 019755 94 WVQNNVQNYANNVKFKYIAVGNEAKPGD-NFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQA 172 (336)
Q Consensus 94 wv~~~v~~~~~~~~i~~I~VGNE~l~~~-~~~~~Ll~~i~~vr~aL~~~gl~~~i~VtT~~~~~~~~~s~pPs~~~f~~~ 172 (336)
-+..-|.+|.-...|.+-..-||.|.+. .++.+++...+...+.++..+=..-|.|+-+-+. |..--|+ .
T Consensus 125 yvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~~sp--~~~~~py-N------ 195 (587)
T COG3934 125 YVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHLVSVGDPASP--WPQYAPY-N------ 195 (587)
T ss_pred HHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCeeecCCcCCc--ccccCCc-c------
Confidence 3445566665456688888889988754 4788888888888888887764443444433222 2221111 1
Q ss_pred cccchhHHHHHhhhcCCCceeccCCCcccCCCCCccccccccccCCCccCCCCCcchh-HHHHHHHHHHHHHHHhCCCCC
Q 019755 173 YRPILDPVITFLNENKSPLLVNLYPYFAIDGNRQISLDYALFRSQQPVVSDPPLSYRN-LFDAQLDATYAALEKAGGGSL 251 (336)
Q Consensus 173 ~~~~i~~~~~fl~~~~d~~~vN~yPff~~~~~~~~~~~~a~f~~~~~~~~d~~~~y~n-~fda~~d~~~~al~~~g~~~~ 251 (336)
...+.|+-.-|+||+|+..-- ..+.+ .|-. +++ - -...| -+
T Consensus 196 -----------~r~~vDya~~hLY~hyd~sl~--~r~s~---------------~yg~~~l~----i----~~~~g--~~ 237 (587)
T COG3934 196 -----------ARFYVDYAANHLYRHYDTSLV--SRVST---------------VYGKPYLD----I----PTIMG--WQ 237 (587)
T ss_pred -----------cceeeccccchhhhhccCChh--heeee---------------eecchhhc----c----chhcc--cc
Confidence 123668888999998876420 11110 1101 111 0 01123 26
Q ss_pred cEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCceEEEEEEecCCCcCC----CccccceeeecCCC
Q 019755 252 DIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVKQGSPKKPGRPIETYIFAMFDEKDKQG----AEIERHWGLFAPDK 327 (336)
Q Consensus 252 ~vvVtEtGWPS~G~~~a~as~~na~~y~~~~~~~~~~gtp~~p~~~~~~~~F~~fDe~wK~~----~~~E~~wGlf~~d~ 327 (336)
||+.-|.|.|++-+. ++...|+-.....+..| +.+.-..-|+=|-+--.+. +.-|-.|||.+.|+
T Consensus 238 pV~leefGfsta~g~------e~s~ayfiw~~lal~~g-----gdGaLiwclsdf~~gsdd~ey~w~p~el~fgiIradg 306 (587)
T COG3934 238 PVNLEEFGFSTAFGQ------ENSPAYFIWIRLALDTG-----GDGALIWCLSDFHLGSDDSEYTWGPMELEFGIIRADG 306 (587)
T ss_pred eeeccccCCcccccc------cccchhhhhhhhHHhhc-----CCceEEEEecCCccCCCCCCCccccccceeeeecCCC
Confidence 999999999986542 22333333222222211 1122333344332111111 24788999999999
Q ss_pred Cceeec
Q 019755 328 QPKYQV 333 (336)
Q Consensus 328 ~~Ky~l 333 (336)
.+|++.
T Consensus 307 pek~~a 312 (587)
T COG3934 307 PEKIDA 312 (587)
T ss_pred chhhhH
Confidence 999864
No 15
>PRK09936 hypothetical protein; Provisional
Probab=85.40 E-value=5.8 Score=37.92 Aligned_cols=119 Identities=14% Similarity=0.150 Sum_probs=67.4
Q ss_pred CeeeEEecCCCCC-CCCHHHHH---HHHhcCCCCEEEEc----C-CC--------hHHHHHHhcCCCEEEEecCCCCC--
Q 019755 21 AQIGVCYGMLGDN-LPSKPDVI---ALYNQNNIRRMRLY----D-PN--------KEALEALRGSNIEVMLGLPNDKL-- 81 (336)
Q Consensus 21 ~~~Gi~Y~~~~~~-~~~~~~v~---~ll~~~~~~~VRlY----~-~d--------~~vl~A~~~~gi~V~lGv~~~~~-- 81 (336)
...|+=|.|.+.| .-++++.. +.++..|++.+=+- + +| ...++++.+.||+|.+|++.|..
T Consensus 20 a~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp~y~ 99 (296)
T PRK09936 20 AMKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADPEFF 99 (296)
T ss_pred ccccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCChHHH
Confidence 4567789999877 45677654 55567788766542 1 12 46888889999999999998631
Q ss_pred hhhhhcHHHHHHHHHhhcccc---------CCCceEEEEEeccccC--C-CCc-chHHHHHHHHHHHHHHH
Q 019755 82 QPIASNQAEANTWVQNNVQNY---------ANNVKFKYIAVGNEAK--P-GDN-FAQYLVPAMRNIQNAIN 139 (336)
Q Consensus 82 ~~~~~~~~~a~~wv~~~v~~~---------~~~~~i~~I~VGNE~l--~-~~~-~~~~Ll~~i~~vr~aL~ 139 (336)
.....+..+.+.|++..+... .++..+++--+-=|.= . +.. --+.|+..++++.+.|.
T Consensus 100 q~~~~d~~~~~~yl~~~l~~~~~qa~~~~~~~~~~v~GWYiP~ElDd~~W~~~~rR~~L~~~L~~~~~~l~ 170 (296)
T PRK09936 100 MHQKQDGAALESYLNRQLGASLQQARLWSAAWGVPVDGWYLPAELDDLNWRDEARRQPLLTWLNAAQRLID 170 (296)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeeeccchhcccCHHHHHHHHHHHHHHHHhCC
Confidence 112223223333444322111 1233344433333431 1 111 23567778888877775
No 16
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=84.78 E-value=9.4 Score=37.48 Aligned_cols=133 Identities=17% Similarity=0.179 Sum_probs=74.2
Q ss_pred CCEEEEcCC-ChHHHHHHhcCCCEEEEecCCCCChhhhhcHHHHHHHHHhhccccCCCceEEEEEeccccCCC-C-cchH
Q 019755 49 IRRMRLYDP-NKEALEALRGSNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQNYANNVKFKYIAVGNEAKPG-D-NFAQ 125 (336)
Q Consensus 49 ~~~VRlY~~-d~~vl~A~~~~gi~V~lGv~~~~~~~~~~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~-~-~~~~ 125 (336)
++.|-+|+. +++++..+.+.|++|++..-.. ...+ .+++.-.++++ ++..+.....+.+|-+==|-... + ....
T Consensus 56 ~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l-~~~~~R~~fi~-siv~~~~~~gfDGIdIDwE~p~~~~~~d~~ 132 (358)
T cd02875 56 VTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQI-SNPTYRTQWIQ-QKVELAKSQFMDGINIDIEQPITKGSPEYY 132 (358)
T ss_pred ceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHc-CCHHHHHHHHH-HHHHHHHHhCCCeEEEcccCCCCCCcchHH
Confidence 678888864 6899999999999999864322 1112 22222222332 22222222346677666564432 1 2356
Q ss_pred HHHHHHHHHHHHHHhCCCCCceeEeeeeecccccccCCCCCcccccccccchhHHHHHhhhcCCCceeccCCCcc
Q 019755 126 YLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFA 200 (336)
Q Consensus 126 ~Ll~~i~~vr~aL~~~gl~~~i~VtT~~~~~~~~~s~pPs~~~f~~~~~~~i~~~~~fl~~~~d~~~vN~yPff~ 200 (336)
.+..-|+++|++|++.+..- .++.+..+. |+..... .. -+.-|++..|++.+-.|=|..
T Consensus 133 ~~t~llkelr~~l~~~~~~~--~Lsvav~~~-------p~~~~~~----~y---d~~~l~~~vD~v~lMtYD~h~ 191 (358)
T cd02875 133 ALTELVKETTKAFKKENPGY--QISFDVAWS-------PSCIDKR----CY---DYTGIADASDFLVVMDYDEQS 191 (358)
T ss_pred HHHHHHHHHHHHHhhcCCCc--EEEEEEecC-------ccccccc----cc---CHHHHHhhCCEeeEEeecccC
Confidence 78899999999998875432 344433211 2111100 00 022366777888888887653
No 17
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=84.63 E-value=34 Score=34.96 Aligned_cols=251 Identities=15% Similarity=0.193 Sum_probs=116.2
Q ss_pred HHHHHhcCCCCEEEEcCC--C---------------------hHHHHHHhcCCCEEEEecCCCC--C----h-hh-----
Q 019755 40 VIALYNQNNIRRMRLYDP--N---------------------KEALEALRGSNIEVMLGLPNDK--L----Q-PI----- 84 (336)
Q Consensus 40 v~~ll~~~~~~~VRlY~~--d---------------------~~vl~A~~~~gi~V~lGv~~~~--~----~-~~----- 84 (336)
+..+.+..||+.||+.+. | ..++..+.+.||+-++-+-... + . .+
T Consensus 45 l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p~~~~~~~~~~~~~~~~ 124 (486)
T PF01229_consen 45 LRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMPMALASGYQTVFWYKGN 124 (486)
T ss_dssp HHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB-GGGBSS--EETTTTEE
T ss_pred HHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEechhhhcCCCCccccccCC
Confidence 444556689999998752 0 2588889999998866553210 0 0 00
Q ss_pred ---hhcHHH----HHHHHHhhccccCCCceEE--EEEeccccCCCC----cchHHHHHHHHHHHHHHHhCCCCCceeEee
Q 019755 85 ---ASNQAE----ANTWVQNNVQNYANNVKFK--YIAVGNEAKPGD----NFAQYLVPAMRNIQNAINGANLGSQIKVST 151 (336)
Q Consensus 85 ---~~~~~~----a~~wv~~~v~~~~~~~~i~--~I~VGNE~l~~~----~~~~~Ll~~i~~vr~aL~~~gl~~~i~VtT 151 (336)
..+.+. ..++++.-+.+|. ...|+ ..=|=||+=..+ ...++-...-+.+..+|++.. +.++|+-
T Consensus 125 ~~pp~~~~~W~~lv~~~~~h~~~RYG-~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~--p~~~vGG 201 (486)
T PF01229_consen 125 ISPPKDYEKWRDLVRAFARHYIDRYG-IEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVD--PELKVGG 201 (486)
T ss_dssp -S-BS-HHHHHHHHHHHHHHHHHHHH-HHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH---TTSEEEE
T ss_pred cCCcccHHHHHHHHHHHHHHHHhhcC-CccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhC--CCCcccC
Confidence 012222 2233333344441 11121 345688864432 234566777777777887764 3588987
Q ss_pred eeecccccccCCCCCcccccccccchhHHHHHhhh---cCCCceeccCCCcccCCCCCccccccccccCCCccCCCCCcc
Q 019755 152 AIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNE---NKSPLLVNLYPYFAIDGNRQISLDYALFRSQQPVVSDPPLSY 228 (336)
Q Consensus 152 ~~~~~~~~~s~pPs~~~f~~~~~~~i~~~~~fl~~---~~d~~~vN~yPff~~~~~~~~~~~~a~f~~~~~~~~d~~~~y 228 (336)
+-.. +. . ...+...++|+.+ .-|++..|.||.-...... -. ....-...
T Consensus 202 p~~~--~~--~-----------~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~---~~----------~~~~~~~~ 253 (486)
T PF01229_consen 202 PAFA--WA--Y-----------DEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDIN---EN----------MYERIEDS 253 (486)
T ss_dssp EEEE--TT--------------THHHHHHHHHHHHCT---SEEEEEEE-BESESE-S---S-----------EEEEB--H
T ss_pred cccc--cc--H-----------HHHHHHHHHHHhcCCCCCCEEEEEecccccccccc---hh----------HHhhhhhH
Confidence 6110 00 0 1234566666654 4588889988863321100 00 00000001
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCcEEEeeeccCCCCCC--CCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCceEEEEE--
Q 019755 229 RNLFDAQLDATYAALEKAGGGSLDIVISESGWPTAGGD--GALTNVDNARTYNNNLIQHVKQGSPKKPGRPIETYIFA-- 304 (336)
Q Consensus 229 ~n~fda~~d~~~~al~~~g~~~~~vvVtEtGWPS~G~~--~a~as~~na~~y~~~~~~~~~~gtp~~p~~~~~~~~F~-- 304 (336)
..+++. +..+...+...+.+++++.+|| |.+.-.. .-.-|.-+|....+++++... ..++.|-+-
T Consensus 254 ~~~~~~-~~~~~~~~~~e~~p~~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~--------~~l~~~sywt~ 322 (486)
T PF01229_consen 254 RRLFPE-LKETRPIINDEADPNLPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSNDG--------AFLDSFSYWTF 322 (486)
T ss_dssp HHHHHH-HHHHHHHHHTSSSTT--EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHGG--------GT-SEEEES-S
T ss_pred HHHHHH-HHHHHHHHhhccCCCCceeecc--cccccCCCcchhccccchhhHHHHHHHhhh--------hhhhhhhccch
Confidence 122222 2233333445577899999999 8776542 123455666666666666653 123333222
Q ss_pred --EecCCCcCCCccccceeeecCCCCceee
Q 019755 305 --MFDEKDKQGAEIERHWGLFAPDKQPKYQ 332 (336)
Q Consensus 305 --~fDe~wK~~~~~E~~wGlf~~d~~~Ky~ 332 (336)
.|.|.-.....+-..|||++.+|-+|..
T Consensus 323 sD~Fee~~~~~~pf~ggfGLlt~~gI~KPa 352 (486)
T PF01229_consen 323 SDRFEENGTPRKPFHGGFGLLTKLGIPKPA 352 (486)
T ss_dssp BS---TTSS-SSSSSS-S-SEECCCEE-HH
T ss_pred hhhhhccCCCCCceecchhhhhccCCCchH
Confidence 3433322222466779999999877743
No 18
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=83.43 E-value=0.36 Score=48.92 Aligned_cols=280 Identities=19% Similarity=0.236 Sum_probs=129.5
Q ss_pred HHHHHHHhcCCCCEEEEcCC-------------C-------hHHHHHHhcCCCEEEEecCCCCChhhhhcH-----HHHH
Q 019755 38 PDVIALYNQNNIRRMRLYDP-------------N-------KEALEALRGSNIEVMLGLPNDKLQPIASNQ-----AEAN 92 (336)
Q Consensus 38 ~~v~~ll~~~~~~~VRlY~~-------------d-------~~vl~A~~~~gi~V~lGv~~~~~~~~~~~~-----~~a~ 92 (336)
+++++|+++.|++..|+==. | .+++..+++.||+.++.+..-+++.+-.+. ....
T Consensus 61 ~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~~ 140 (455)
T PF00232_consen 61 KEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRETV 140 (455)
T ss_dssp HHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHHH
T ss_pred hHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHHH
Confidence 67889999999999986421 2 368999999999999999877766422111 0111
Q ss_pred HHHHhh----ccccCCCceEEEEEeccccCCC-------C------cc-------hHHHHHHHHHHHHHHHhCCCCCcee
Q 019755 93 TWVQNN----VQNYANNVKFKYIAVGNEAKPG-------D------NF-------AQYLVPAMRNIQNAINGANLGSQIK 148 (336)
Q Consensus 93 ~wv~~~----v~~~~~~~~i~~I~VGNE~l~~-------~------~~-------~~~Ll~~i~~vr~aL~~~gl~~~i~ 148 (336)
.++.+- +..+ ++.|+.-+.=||+..- + .. ...++-+-..+.+.+++..- +.+
T Consensus 141 ~~F~~Ya~~~~~~~--gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~--~~~ 216 (455)
T PF00232_consen 141 DWFARYAEFVFERF--GDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYP--DGK 216 (455)
T ss_dssp HHHHHHHHHHHHHH--TTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTC--TSE
T ss_pred HHHHHHHHHHHHHh--CCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhccc--ceE
Confidence 112111 2233 4678888888997531 1 01 12233333444455565553 357
Q ss_pred Eeeeeecccc-ccc-CCCCC---c----c----------cccccccch--------------hHHHHHhhhcCCCceecc
Q 019755 149 VSTAIEFGAL-EVS-SPPSA---G----S----------FKQAYRPIL--------------DPVITFLNENKSPLLVNL 195 (336)
Q Consensus 149 VtT~~~~~~~-~~s-~pPs~---~----~----------f~~~~~~~i--------------~~~~~fl~~~~d~~~vN~ 195 (336)
|+.+.+.... ..+ .++.. + . +..++...| .+.+..|....|++++|-
T Consensus 217 IGi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNY 296 (455)
T PF00232_consen 217 IGIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINY 296 (455)
T ss_dssp EEEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEE
T ss_pred EeccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhcc
Confidence 7776655322 111 00000 0 0 000111111 122334456799999998
Q ss_pred CCCcccCCCC--Ccccccc---cccc---CCCccCCCCCc-chhHHHHHHHHHHHHHHHhCCCCCcEEEeeeccCCCCCC
Q 019755 196 YPYFAIDGNR--QISLDYA---LFRS---QQPVVSDPPLS-YRNLFDAQLDATYAALEKAGGGSLDIVISESGWPTAGGD 266 (336)
Q Consensus 196 yPff~~~~~~--~~~~~~a---~f~~---~~~~~~d~~~~-y~n~fda~~d~~~~al~~~g~~~~~vvVtEtGWPS~G~~ 266 (336)
|.=---.... .....+. .+.. +.....+.+.. |..-+-.++.-+. + -++++||+|||.|++.....
T Consensus 297 Yt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L~~l~---~--~Y~~~pI~ITENG~~~~~~~ 371 (455)
T PF00232_consen 297 YTSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIYPEGLRDVLRYLK---D--RYGNPPIYITENGIGDPDEV 371 (455)
T ss_dssp SEEEEEEESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBETHHHHHHHHHHH---H--HHTSSEEEEEEE---EETTC
T ss_pred ccceeeccCccccccccccCCccccccccccccccccCcccccchHhhhhhhhc---c--ccCCCcEEEecccccccccc
Confidence 8532222111 1111111 0100 00001111211 1222222222221 1 25678999999999987652
Q ss_pred CCC-----CCHHHHHHHHHHHHHHHhhCCCCCCCCCceEEEEEEecCCCcCCCccccceeeecCC------CCceee
Q 019755 267 GAL-----TNVDNARTYNNNLIQHVKQGSPKKPGRPIETYIFAMFDEKDKQGAEIERHWGLFAPD------KQPKYQ 332 (336)
Q Consensus 267 ~a~-----as~~na~~y~~~~~~~~~~gtp~~p~~~~~~~~F~~fDe~wK~~~~~E~~wGlf~~d------~~~Ky~ 332 (336)
... .-+.--+.+++.+.+.++.|.+- .-+|..++.|- +--..+..+.|||+.-| |+||-+
T Consensus 372 ~~~~v~D~~Ri~yl~~hl~~v~~Ai~dGv~V-----~GY~~WSl~Dn-~Ew~~Gy~~rfGl~~VD~~~~~~R~pK~S 442 (455)
T PF00232_consen 372 DDGKVDDDYRIDYLQDHLNQVLKAIEDGVNV-----RGYFAWSLLDN-FEWAEGYKKRFGLVYVDFFDTLKRTPKKS 442 (455)
T ss_dssp TTSHBSHHHHHHHHHHHHHHHHHHHHTT-EE-----EEEEEETSB----BGGGGGGSE--SEEEETTTTTEEEEBHH
T ss_pred cccCcCcHHHHHHHHHHHHHHHhhhccCCCe-----eeEeeeccccc-cccccCccCccCceEEcCCCCcCeeeccH
Confidence 111 11222344444444444445432 23666666663 32223589999999999 777754
No 19
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=83.06 E-value=11 Score=36.49 Aligned_cols=172 Identities=15% Similarity=0.205 Sum_probs=72.6
Q ss_pred HHHHHHhcCCCEEEEecCCCCChhhhhcHHHHHHHHHhhcc---ccC--CCceEEEEEeccccCCCC----cchHHHHHH
Q 019755 60 EALEALRGSNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQ---NYA--NNVKFKYIAVGNEAKPGD----NFAQYLVPA 130 (336)
Q Consensus 60 ~vl~A~~~~gi~V~lGv~~~~~~~~~~~~~~a~~wv~~~v~---~~~--~~~~i~~I~VGNE~l~~~----~~~~~Ll~~ 130 (336)
++-+-+.++|++|+.|+..-.-.........-..|=-+|.. +|. .+-.|.+-=.|||.--.+ -.+.++..-
T Consensus 113 ~l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD 192 (319)
T PF03662_consen 113 ELNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKD 192 (319)
T ss_dssp HHHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHH
T ss_pred HHHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHH
Confidence 44455678999999999753211111112334556666644 331 345688888999964322 157888888
Q ss_pred HHHHHHHHHhC---CCCCceeEeeeeecccccccCCCCCcccccccccchhHHHHHhhh-cCCCceeccCCCcccCCCCC
Q 019755 131 MRNIQNAINGA---NLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNE-NKSPLLVNLYPYFAIDGNRQ 206 (336)
Q Consensus 131 i~~vr~aL~~~---gl~~~i~VtT~~~~~~~~~s~pPs~~~f~~~~~~~i~~~~~fl~~-~~d~~~vN~yPff~~~~~~~ 206 (336)
...+|+.|+.. .+.+ -.|.-+... |. ...+++.++-..+ ..|.+.-|+|+. ....+..
T Consensus 193 ~~~Lr~il~~iy~~~~~~-P~v~gP~~~-------------~d---~~w~~~FL~~~g~~~vD~vT~H~Y~l-g~g~d~~ 254 (319)
T PF03662_consen 193 FIQLRKILNEIYKNALPG-PLVVGPGGF-------------FD---ADWLKEFLKASGPGVVDAVTWHHYNL-GSGRDPA 254 (319)
T ss_dssp H---HHHHHHHHHH-TT----EEEEEES-------------S----GGGHHHHHHHTTTT--SEEEEEEEEE---TT-TT
T ss_pred HHHHHHHHHHHHhcCCCC-CeEECCCCC-------------CC---HHHHHHHHHhcCCCccCEEEEEecCC-CCCchHH
Confidence 88888887653 1111 234444321 11 1335555555555 378888888863 2221111
Q ss_pred ccccccccccCCCccCCCCCcchhHHHH---HHHHHHHHHHHhCCCCCcEEEeeeccCCCCC
Q 019755 207 ISLDYALFRSQQPVVSDPPLSYRNLFDA---QLDATYAALEKAGGGSLDIVISESGWPTAGG 265 (336)
Q Consensus 207 ~~~~~a~f~~~~~~~~d~~~~y~n~fda---~~d~~~~al~~~g~~~~~vvVtEtGWPS~G~ 265 (336)
. ...+ .++ +++|. ++..+...+++.+ +++++||+|||=...|+
T Consensus 255 l--~~~~--------l~p-----~~Ld~~~~~~~~~~~~v~~~~-p~~~~WlGEtg~Ay~gG 300 (319)
T PF03662_consen 255 L--IEDF--------LNP-----SYLDTLADTFQKLQQVVQEYG-PGKPVWLGETGSAYNGG 300 (319)
T ss_dssp ---HHHH--------TS-------HHHHHHHHHHHHH-----HH-H---EEEEEEEEESTT-
T ss_pred H--HHHh--------cCh-----hhhhHHHHHHHHHhhhhcccC-CCCCeEEeCcccccCCC
Confidence 0 0011 122 23443 3334444344444 78899999999887665
No 20
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=75.88 E-value=4.5 Score=41.26 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCCCEEEEcC------------CC-------hHHHHHHhcCCCEEEEecCCCCChh
Q 019755 38 PDVIALYNQNNIRRMRLYD------------PN-------KEALEALRGSNIEVMLGLPNDKLQP 83 (336)
Q Consensus 38 ~~v~~ll~~~~~~~VRlY~------------~d-------~~vl~A~~~~gi~V~lGv~~~~~~~ 83 (336)
+|+++|+++.|++.-|+== .+ .+++.+|.+.||+-++.+..-+++.
T Consensus 57 ~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 121 (469)
T PRK13511 57 PEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPE 121 (469)
T ss_pred HHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcH
Confidence 6788999999988887521 12 3799999999999999999877764
No 21
>PLN02998 beta-glucosidase
Probab=73.40 E-value=4.7 Score=41.53 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCCCEEEEcC------------CC-------hHHHHHHhcCCCEEEEecCCCCChh
Q 019755 38 PDVIALYNQNNIRRMRLYD------------PN-------KEALEALRGSNIEVMLGLPNDKLQP 83 (336)
Q Consensus 38 ~~v~~ll~~~~~~~VRlY~------------~d-------~~vl~A~~~~gi~V~lGv~~~~~~~ 83 (336)
+|+++|+++.|++.-|+== .+ .+++.++.+.||+-++.++.-+++.
T Consensus 85 ~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~ 149 (497)
T PLN02998 85 KEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQ 149 (497)
T ss_pred HHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH
Confidence 5688999999988877521 12 3699999999999999998877664
No 22
>PLN02814 beta-glucosidase
Probab=72.55 E-value=4.8 Score=41.51 Aligned_cols=46 Identities=22% Similarity=0.269 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCCCEEEEcC------------CC-------hHHHHHHhcCCCEEEEecCCCCChh
Q 019755 38 PDVIALYNQNNIRRMRLYD------------PN-------KEALEALRGSNIEVMLGLPNDKLQP 83 (336)
Q Consensus 38 ~~v~~ll~~~~~~~VRlY~------------~d-------~~vl~A~~~~gi~V~lGv~~~~~~~ 83 (336)
.++++|++..|++.-|+== .+ .+++.++.+.||+-++.+..-++|.
T Consensus 80 ~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~ 144 (504)
T PLN02814 80 KEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQ 144 (504)
T ss_pred HHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH
Confidence 5688999999888777421 12 3799999999999999998877764
No 23
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=70.29 E-value=59 Score=36.69 Aligned_cols=97 Identities=16% Similarity=0.086 Sum_probs=60.0
Q ss_pred eeeEEecCCCCC---CCCHHH---HHHHHhcCCCCEEEEcC--CChHHHHHHhcCCCEEEEecCCCCCh-----hhhhcH
Q 019755 22 QIGVCYGMLGDN---LPSKPD---VIALYNQNNIRRMRLYD--PNKEALEALRGSNIEVMLGLPNDKLQ-----PIASNQ 88 (336)
Q Consensus 22 ~~Gi~Y~~~~~~---~~~~~~---v~~ll~~~~~~~VRlY~--~d~~vl~A~~~~gi~V~lGv~~~~~~-----~~~~~~ 88 (336)
..|+|+-..... ..++++ .++++|..|++.||+-. .++..++.|-+.||-|+-=++..... .+..++
T Consensus 352 lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp 431 (1027)
T PRK09525 352 IRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDP 431 (1027)
T ss_pred EEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCH
Confidence 468887644322 234444 56789999999999943 24789999999999998776542100 011111
Q ss_pred ---HHHHHHHHhhccccCCCceEEEEEeccccC
Q 019755 89 ---AEANTWVQNNVQNYANNVKFKYIAVGNEAK 118 (336)
Q Consensus 89 ---~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l 118 (336)
++..+-+++.|.+....-.|..=++|||.-
T Consensus 432 ~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 432 RWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 122222445565554435678899999974
No 24
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=70.13 E-value=19 Score=31.63 Aligned_cols=83 Identities=18% Similarity=0.295 Sum_probs=45.5
Q ss_pred HHHHHHhcC--CCEEEEecCCCCChh---hhhcHHHHHHHHHhhccccCCCceEEEEEeccccCCCCc--chHHHHHHHH
Q 019755 60 EALEALRGS--NIEVMLGLPNDKLQP---IASNQAEANTWVQNNVQNYANNVKFKYIAVGNEAKPGDN--FAQYLVPAMR 132 (336)
Q Consensus 60 ~vl~A~~~~--gi~V~lGv~~~~~~~---~~~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~~~--~~~~Ll~~i~ 132 (336)
.-+..+++. |+||++.+....... +..+.+...+ +.+++..+.....+++|-+==|.....+ ....++..|+
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~-f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~ 131 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAA-FANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLR 131 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHH-HHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHH
Confidence 345555554 999999887643222 2333322222 1223322222234556655445433222 3578999999
Q ss_pred HHHHHHHhCCC
Q 019755 133 NIQNAINGANL 143 (336)
Q Consensus 133 ~vr~aL~~~gl 143 (336)
.+|++|.+.++
T Consensus 132 ~lr~~l~~~~~ 142 (210)
T cd00598 132 ELRSALGAANY 142 (210)
T ss_pred HHHHHhcccCc
Confidence 99999987653
No 25
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=69.85 E-value=60 Score=31.29 Aligned_cols=218 Identities=19% Similarity=0.188 Sum_probs=113.6
Q ss_pred hHHHHHHhcCCCEEE--EecCCCCChhhhhc------------HHHHHHHHHhhccccCCC-ceEEEEEeccccCCCCc-
Q 019755 59 KEALEALRGSNIEVM--LGLPNDKLQPIASN------------QAEANTWVQNNVQNYANN-VKFKYIAVGNEAKPGDN- 122 (336)
Q Consensus 59 ~~vl~A~~~~gi~V~--lGv~~~~~~~~~~~------------~~~a~~wv~~~v~~~~~~-~~i~~I~VGNE~l~~~~- 122 (336)
..+++-++++||+|- .-+|....+.+-.+ .+...+++.+-+..| .+ ..|...=|=||++..+.
T Consensus 62 D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y-~~~g~i~~WDVvNE~i~~~~~ 140 (320)
T PF00331_consen 62 DAILDWARENGIKVRGHTLVWHSQTPDWVFNLANGSPDEKEELRARLENHIKTVVTRY-KDKGRIYAWDVVNEAIDDDGN 140 (320)
T ss_dssp HHHHHHHHHTT-EEEEEEEEESSSS-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHT-TTTTTESEEEEEES-B-TTSS
T ss_pred hHHHHHHHhcCcceeeeeEEEcccccceeeeccCCCcccHHHHHHHHHHHHHHHHhHh-ccccceEEEEEeeecccCCCc
Confidence 367777889998776 45676655542221 233445665555555 43 48999999999997531
Q ss_pred -------c------hHHHHHHHHHHHHHHHhCCCCCceeEeeeeecccccccCCCCCcccccccccchhHHHHHhhhcC-
Q 019755 123 -------F------AQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENK- 188 (336)
Q Consensus 123 -------~------~~~Ll~~i~~vr~aL~~~gl~~~i~VtT~~~~~~~~~s~pPs~~~f~~~~~~~i~~~~~fl~~~~- 188 (336)
. ++.+..+.+-.|++..+ ++.---+ .+++. + .-...+..+++.|.+.+
T Consensus 141 ~~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~------a~L~~ND-y~~~~----~-------~k~~~~~~lv~~l~~~gv 202 (320)
T PF00331_consen 141 PGGLRDSPWYDALGPDYIADAFRAAREADPN------AKLFYND-YNIES----P-------AKRDAYLNLVKDLKARGV 202 (320)
T ss_dssp SSSBCTSHHHHHHTTCHHHHHHHHHHHHHTT------SEEEEEE-SSTTS----T-------HHHHHHHHHHHHHHHTTH
T ss_pred cccccCChhhhcccHhHHHHHHHHHHHhCCC------cEEEecc-ccccc----h-------HHHHHHHHHHHHHHhCCC
Confidence 1 34566677777777653 3332222 11111 0 01223456666665542
Q ss_pred --CCceeccCCCcccCCCCCccccccccccCCCccCCCCCcchhHHHHHHHHHHHHHHHhCCCCCcEEEeeeccCCCCCC
Q 019755 189 --SPLLVNLYPYFAIDGNRQISLDYALFRSQQPVVSDPPLSYRNLFDAQLDATYAALEKAGGGSLDIVISESGWPTAGGD 266 (336)
Q Consensus 189 --d~~~vN~yPff~~~~~~~~~~~~a~f~~~~~~~~d~~~~y~n~fda~~d~~~~al~~~g~~~~~vvVtEtGWPS~G~~ 266 (336)
|-+++..| |.. + +. .+.+..+|+++..-+++|.|||.-=.+....
T Consensus 203 pIdgIG~Q~H-----------------~~~------~----~~------~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~ 249 (320)
T PF00331_consen 203 PIDGIGLQSH-----------------FDA------G----YP------PEQIWNALDRFASLGLPIHITELDVRDDDNP 249 (320)
T ss_dssp CS-EEEEEEE-----------------EET------T----SS------HHHHHHHHHHHHTTTSEEEEEEEEEESSSTT
T ss_pred ccceechhhc-----------------cCC------C----CC------HHHHHHHHHHHHHcCCceEEEeeeecCCCCC
Confidence 22332222 100 0 00 2334444555544568999999966655442
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhCCCCCCCCCceEEEEE-EecCC-CcCCCccccceeeecCCCCceeec
Q 019755 267 GALTNVDNARTYNNNLIQHVKQGSPKKPGRPIETYIFA-MFDEK-DKQGAEIERHWGLFAPDKQPKYQV 333 (336)
Q Consensus 267 ~a~as~~na~~y~~~~~~~~~~gtp~~p~~~~~~~~F~-~fDe~-wK~~~~~E~~wGlf~~d~~~Ky~l 333 (336)
......+.|..+++.++..+.+- | +. .+.-+.+- +.|.. |..... -.+=+||+.|.+||...
T Consensus 250 ~~~~~~~~qA~~~~~~~~~~~~~-~--~~-~v~git~Wg~~D~~sW~~~~~-~~~~~lfd~~~~~Kpa~ 313 (320)
T PF00331_consen 250 PDAEEEEAQAEYYRDFLTACFSH-P--PA-AVEGITWWGFTDGYSWRPDTP-PDRPLLFDEDYQPKPAY 313 (320)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHT-T--HC-TEEEEEESSSBTTGSTTGGHS-EG--SSB-TTSBB-HHH
T ss_pred cchHHHHHHHHHHHHHHHHHHhC-C--cc-CCCEEEEECCCCCCcccCCCC-CCCCeeECCCcCCCHHH
Confidence 11345678888999999887621 1 01 34444444 55533 544200 13347999999999753
No 26
>PLN02849 beta-glucosidase
Probab=68.84 E-value=6.8 Score=40.39 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCCCEEEE-------cC-----CC-------hHHHHHHhcCCCEEEEecCCCCChh
Q 019755 38 PDVIALYNQNNIRRMRL-------YD-----PN-------KEALEALRGSNIEVMLGLPNDKLQP 83 (336)
Q Consensus 38 ~~v~~ll~~~~~~~VRl-------Y~-----~d-------~~vl~A~~~~gi~V~lGv~~~~~~~ 83 (336)
.++++|++..|++.-|+ +- .+ .+++.++.+.||+-++.++.-++|-
T Consensus 82 ~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~ 146 (503)
T PLN02849 82 KEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQ 146 (503)
T ss_pred HHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcH
Confidence 56789999998888774 21 12 3689999999999999998877664
No 27
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=68.25 E-value=12 Score=28.75 Aligned_cols=47 Identities=11% Similarity=0.048 Sum_probs=31.8
Q ss_pred CCceEEEEEeccc-cCCC--------Cc-chHHHHHHHHHHHHHHHhCCCCCceeEeee
Q 019755 104 NNVKFKYIAVGNE-AKPG--------DN-FAQYLVPAMRNIQNAINGANLGSQIKVSTA 152 (336)
Q Consensus 104 ~~~~i~~I~VGNE-~l~~--------~~-~~~~Ll~~i~~vr~aL~~~gl~~~i~VtT~ 152 (336)
....|.+-=|+|| .... ++ ..+.+.+.|+++-+.+++.. +++|||+.
T Consensus 7 ~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~d--P~~pvt~g 63 (88)
T PF12876_consen 7 YDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVD--PSQPVTSG 63 (88)
T ss_dssp -GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT---TTS-EE--
T ss_pred CCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhC--CCCcEEee
Confidence 3578999999999 5521 11 36789999999999999876 45788865
No 28
>PLN03059 beta-galactosidase; Provisional
Probab=68.03 E-value=1e+02 Score=33.85 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=71.2
Q ss_pred HHHHHHhcCCCCEEEEcCC-----------------C-hHHHHHHhcCCCEEEEec---------------CCCCChh--
Q 019755 39 DVIALYNQNNIRRMRLYDP-----------------N-KEALEALRGSNIEVMLGL---------------PNDKLQP-- 83 (336)
Q Consensus 39 ~v~~ll~~~~~~~VRlY~~-----------------d-~~vl~A~~~~gi~V~lGv---------------~~~~~~~-- 83 (336)
+.++.+|..|++.|-+|-. | ..-++.+++.||.|+|=. |.-..+.
T Consensus 63 d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~ 142 (840)
T PLN03059 63 DLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIE 142 (840)
T ss_pred HHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcc
Confidence 3556778899999999953 1 356777889999998843 3211111
Q ss_pred hhh-cH---HHHHHHHHhhccc-----c--CCCceEEEEEeccccCCC-CcchHHHHHHHHHHHHHHHhCCCCCceeEee
Q 019755 84 IAS-NQ---AEANTWVQNNVQN-----Y--ANNVKFKYIAVGNEAKPG-DNFAQYLVPAMRNIQNAINGANLGSQIKVST 151 (336)
Q Consensus 84 ~~~-~~---~~a~~wv~~~v~~-----~--~~~~~i~~I~VGNE~l~~-~~~~~~Ll~~i~~vr~aL~~~gl~~~i~VtT 151 (336)
+.+ ++ ++..+|+..-+.. + -.+..|..+-|-||-=.- ......=-.||+.+++++++.|+. ||.-|
T Consensus 143 ~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~--VPl~t 220 (840)
T PLN03059 143 FRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTG--VPWVM 220 (840)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCC--cceEE
Confidence 111 11 2444555433221 1 134678999999995211 011122367999999999999984 88888
Q ss_pred eee
Q 019755 152 AIE 154 (336)
Q Consensus 152 ~~~ 154 (336)
++.
T Consensus 221 ~dg 223 (840)
T PLN03059 221 CKQ 223 (840)
T ss_pred CCC
Confidence 764
No 29
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.78 E-value=22 Score=35.18 Aligned_cols=58 Identities=19% Similarity=0.396 Sum_probs=38.4
Q ss_pred cchhHHHHHHHHHHHHHHHhCCCCCcEEEeeeccCCCCC---C-CCCCCHHHHHHHHHHHHHHHh
Q 019755 227 SYRNLFDAQLDATYAALEKAGGGSLDIVISESGWPTAGG---D-GALTNVDNARTYNNNLIQHVK 287 (336)
Q Consensus 227 ~y~n~fda~~d~~~~al~~~g~~~~~vvVtEtGWPS~G~---~-~a~as~~na~~y~~~~~~~~~ 287 (336)
.|.|-|++.+-.......-.|.+..+|+.+ |||+|+ + .-..|...++..++.+++.+.
T Consensus 124 GfNntf~dav~R~aqI~~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La 185 (377)
T COG4782 124 GFNNTFEDAVYRTAQIVHDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLA 185 (377)
T ss_pred ccCCchhHHHHHHHHHHhhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHH
Confidence 355666654433333333457778888887 999998 1 235677777888888888776
No 30
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=65.62 E-value=56 Score=31.98 Aligned_cols=56 Identities=11% Similarity=0.020 Sum_probs=34.5
Q ss_pred chHHHHHHHHHHHHHHHhCCCCCceeEeeeeecccccccCCCCCcccccccccchhHHHHHhhhcCCCceeccCCC
Q 019755 123 FAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPY 198 (336)
Q Consensus 123 ~~~~Ll~~i~~vr~aL~~~gl~~~i~VtT~~~~~~~~~s~pPs~~~f~~~~~~~i~~~~~fl~~~~d~~~vN~yPf 198 (336)
....+..+++..+..|++.. ++.+|+|..... +.. + + +... +++..|++..|.||.
T Consensus 207 ~~~~~~~~~~~~~~~ir~~~--p~~~vt~n~~~~-~~~-----------~----~-d~~~-~a~~~D~~~~d~Y~~ 262 (374)
T PF02449_consen 207 QSDRVAEFFRWQADIIREYD--PDHPVTTNFMGS-WFN-----------G----I-DYFK-WAKYLDVVSWDSYPD 262 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHS--TT-EEE-EE-TT---------------S----S--HHH-HGGGSSSEEEEE-HH
T ss_pred HHHHHHHHHHHHHHHHHHhC--CCceEEeCcccc-ccC-----------c----C-CHHH-HHhhCCcceeccccC
Confidence 35778889999999999875 347999854221 110 0 0 1111 467889999999998
No 31
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=59.94 E-value=17 Score=37.26 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCCCEEEE-------cC------CC-------hHHHHHHhcCCCEEEEecCCCCChh
Q 019755 38 PDVIALYNQNNIRRMRL-------YD------PN-------KEALEALRGSNIEVMLGLPNDKLQP 83 (336)
Q Consensus 38 ~~v~~ll~~~~~~~VRl-------Y~------~d-------~~vl~A~~~~gi~V~lGv~~~~~~~ 83 (336)
.++++|++..|++.-|+ += .+ .+++..|.+.||+-++.++.-+++.
T Consensus 70 ~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~ 135 (476)
T PRK09589 70 KEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPY 135 (476)
T ss_pred HHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCH
Confidence 56889999998887774 21 12 3689999999999999999877664
No 32
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=58.03 E-value=15 Score=37.68 Aligned_cols=46 Identities=22% Similarity=0.402 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCCCEEEE-------cC------CC-------hHHHHHHhcCCCEEEEecCCCCChh
Q 019755 38 PDVIALYNQNNIRRMRL-------YD------PN-------KEALEALRGSNIEVMLGLPNDKLQP 83 (336)
Q Consensus 38 ~~v~~ll~~~~~~~VRl-------Y~------~d-------~~vl~A~~~~gi~V~lGv~~~~~~~ 83 (336)
+++++|++..|++.-|+ +- .+ .+++.++.+.||+.++.++.-++|.
T Consensus 72 ~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~ 137 (477)
T PRK15014 72 KEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPL 137 (477)
T ss_pred HHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCH
Confidence 67889999988877764 21 13 3689999999999999997666553
No 33
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=57.81 E-value=32 Score=32.68 Aligned_cols=83 Identities=16% Similarity=0.236 Sum_probs=50.2
Q ss_pred hHHHHHHhcCCCEEEEecCCCC----C----hhhhhcHHHHHHHHHhhccccCCCceEEEEEeccccCCCCcchHHHHHH
Q 019755 59 KEALEALRGSNIEVMLGLPNDK----L----QPIASNQAEANTWVQNNVQNYANNVKFKYIAVGNEAKPGDNFAQYLVPA 130 (336)
Q Consensus 59 ~~vl~A~~~~gi~V~lGv~~~~----~----~~~~~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~~~~~~~Ll~~ 130 (336)
++++.++++.++||++.|.+.. . ..+..+.+.-.+ +.+++..+.....+.+|-+-=|.+. .+........
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~-fi~~iv~~l~~~~~DGidiDwE~~~-~~d~~~~~~f 125 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQR-LINNILALAKKYGYDGVNIDFENVP-PEDREAYTQF 125 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHH-HHHHHHHHHHHhCCCcEEEecccCC-HHHHHHHHHH
Confidence 6888888889999999886542 1 122333222122 2233333222224566766666643 2345678899
Q ss_pred HHHHHHHHHhCCC
Q 019755 131 MRNIQNAINGANL 143 (336)
Q Consensus 131 i~~vr~aL~~~gl 143 (336)
|+.+|.+|...|+
T Consensus 126 l~~lr~~l~~~~~ 138 (313)
T cd02874 126 LRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHhhhcCc
Confidence 9999999987764
No 34
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=57.42 E-value=97 Score=31.98 Aligned_cols=85 Identities=15% Similarity=0.225 Sum_probs=51.4
Q ss_pred cCCCEEEEecCCC--------CC---hhhhh----cH-HHHHHHHHhhccccCC-CceEEEEEeccccCCC------Cc-
Q 019755 67 GSNIEVMLGLPND--------KL---QPIAS----NQ-AEANTWVQNNVQNYAN-NVKFKYIAVGNEAKPG------DN- 122 (336)
Q Consensus 67 ~~gi~V~lGv~~~--------~~---~~~~~----~~-~~a~~wv~~~v~~~~~-~~~i~~I~VGNE~l~~------~~- 122 (336)
+.+++|+..-|.. .. ..+.. +- ++-..-+.+-|+.|.. +-.|-+|++.||+... -+
T Consensus 166 ~~~lki~aSpWSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s 245 (496)
T PF02055_consen 166 NPNLKIFASPWSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPS 245 (496)
T ss_dssp HTT-EEEEEES---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC-
T ss_pred CCCcEEEEecCCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCc
Confidence 3569999999843 11 11111 11 2223344555666643 4679999999999852 11
Q ss_pred ---chHHHHHHHHH-HHHHHHhCCCCCceeEee
Q 019755 123 ---FAQYLVPAMRN-IQNAINGANLGSQIKVST 151 (336)
Q Consensus 123 ---~~~~Ll~~i~~-vr~aL~~~gl~~~i~VtT 151 (336)
+++++...|++ +.-+|+..|++.++++=.
T Consensus 246 ~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~ 278 (496)
T PF02055_consen 246 MGWTPEEQADFIKNYLGPALRKAGLGKDVKILI 278 (496)
T ss_dssp -B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 57888999986 999999999855688754
No 35
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=55.85 E-value=23 Score=36.23 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=36.3
Q ss_pred HHHHHHHhcCCCCEEEEcC-------------CC-------hHHHHHHhcCCCEEEEecCCCCChh
Q 019755 38 PDVIALYNQNNIRRMRLYD-------------PN-------KEALEALRGSNIEVMLGLPNDKLQP 83 (336)
Q Consensus 38 ~~v~~ll~~~~~~~VRlY~-------------~d-------~~vl~A~~~~gi~V~lGv~~~~~~~ 83 (336)
+++++|+++.|++.-|+== .+ .+++.+|.+.||+-++.++.-+++.
T Consensus 76 ~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~ 141 (478)
T PRK09593 76 KEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPM 141 (478)
T ss_pred HHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCH
Confidence 6788999999988877421 12 3689999999999999998777664
No 36
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=54.84 E-value=15 Score=32.18 Aligned_cols=37 Identities=27% Similarity=0.454 Sum_probs=26.5
Q ss_pred HHHHhcCCCCEEEEcCCChHHHHHHhcCCCEEEEecC
Q 019755 41 IALYNQNNIRRMRLYDPNKEALEALRGSNIEVMLGLP 77 (336)
Q Consensus 41 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~gi~V~lGv~ 77 (336)
.++|+..|+++||+.+.+|.-+.++.+.||+|.=-++
T Consensus 132 aqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 132 AQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 4899999999999999999999999999999875443
No 37
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=54.40 E-value=33 Score=31.47 Aligned_cols=41 Identities=12% Similarity=0.183 Sum_probs=25.7
Q ss_pred HHhCCCCCcEEEeeeccCCCCCC----CCCCCHHHHHHHHHHHHHHHh
Q 019755 244 EKAGGGSLDIVISESGWPTAGGD----GALTNVDNARTYNNNLIQHVK 287 (336)
Q Consensus 244 ~~~g~~~~~vvVtEtGWPS~G~~----~a~as~~na~~y~~~~~~~~~ 287 (336)
..+++++.+|. ..|||.|.. ....+...++..+..++..+.
T Consensus 43 ~~~~~~~~~i~---FsWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~ 87 (233)
T PF05990_consen 43 HDLGFPGVVIL---FSWPSDGSLLGYFYDRESARFSGPALARFLRDLA 87 (233)
T ss_pred HHhCCCceEEE---EEcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 35567764444 569999972 234455666666777777664
No 38
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=51.15 E-value=29 Score=35.57 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCCCEEEE-------cC------CC-------hHHHHHHhcCCCEEEEecCCCCChh
Q 019755 38 PDVIALYNQNNIRRMRL-------YD------PN-------KEALEALRGSNIEVMLGLPNDKLQP 83 (336)
Q Consensus 38 ~~v~~ll~~~~~~~VRl-------Y~------~d-------~~vl~A~~~~gi~V~lGv~~~~~~~ 83 (336)
++++++++..|++..|+ +- .+ ..++.++.+.||+.++.+..-+++.
T Consensus 74 ~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~ 139 (474)
T PRK09852 74 KEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPM 139 (474)
T ss_pred HHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCH
Confidence 56789999988877775 21 13 3689999999999999998877664
No 39
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=50.50 E-value=1e+02 Score=29.87 Aligned_cols=120 Identities=15% Similarity=0.264 Sum_probs=58.3
Q ss_pred HHHhc--CCCEEEEecC--CCCC---hhhhhcHHHHHHHHHhhccccCCCceEEEEEeccccCCC-C---cchHHHHHHH
Q 019755 63 EALRG--SNIEVMLGLP--NDKL---QPIASNQAEANTWVQNNVQNYANNVKFKYIAVGNEAKPG-D---NFAQYLVPAM 131 (336)
Q Consensus 63 ~A~~~--~gi~V~lGv~--~~~~---~~~~~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~-~---~~~~~Ll~~i 131 (336)
.++++ .++||++.|- .... ..+..+...-.+.+ +++..+.....+.+|.+==|-... + .....++..|
T Consensus 62 ~~lk~~~p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi-~~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll 140 (362)
T cd02872 62 NALKEKNPNLKTLLAIGGWNFGSAKFSAMAASPENRKTFI-KSAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLL 140 (362)
T ss_pred HHHHhhCCCceEEEEEcCCCCCcchhHHHhCCHHHHHHHH-HHHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHH
Confidence 34454 4799998773 3221 22333332222222 222222222245566554443321 1 2356789999
Q ss_pred HHHHHHHHhCCCCCceeEeeeeecccccccCCCCCcccccccccchhHHHHHhhhcCCCceeccCCCcc
Q 019755 132 RNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFA 200 (336)
Q Consensus 132 ~~vr~aL~~~gl~~~i~VtT~~~~~~~~~s~pPs~~~f~~~~~~~i~~~~~fl~~~~d~~~vN~yPff~ 200 (336)
+.+|++|++.+- ...++.+.... ...+.... + +.-|.+..|++.+-.|-|..
T Consensus 141 ~~lr~~l~~~~~--~~~ls~av~~~---------~~~~~~~~-----d-~~~l~~~vD~v~vmtYD~~~ 192 (362)
T cd02872 141 KELREAFEPEAP--RLLLTAAVSAG---------KETIDAAY-----D-IPEISKYLDFINVMTYDFHG 192 (362)
T ss_pred HHHHHHHHhhCc--CeEEEEEecCC---------hHHHhhcC-----C-HHHHhhhcceEEEecccCCC
Confidence 999999988731 13444433211 00010000 0 12255677888888887754
No 40
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=50.10 E-value=2.4e+02 Score=27.01 Aligned_cols=71 Identities=13% Similarity=0.035 Sum_probs=44.0
Q ss_pred chHHHHHHHHHHHHHHHhCCCCCceeEeeeeecccccccCCC--CCcc--cccccccchhHHHHHhhhcCCCceeccCCC
Q 019755 123 FAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPP--SAGS--FKQAYRPILDPVITFLNENKSPLLVNLYPY 198 (336)
Q Consensus 123 ~~~~Ll~~i~~vr~aL~~~gl~~~i~VtT~~~~~~~~~s~pP--s~~~--f~~~~~~~i~~~~~fl~~~~d~~~vN~yPf 198 (336)
+.+++.+.+++.|+. +||+..-.--.-|.....+ ..+. |.++.-|-.+.+++.|.+.+=-++++++|+
T Consensus 22 ~~~~v~~~~~~~~~~--------~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~ 93 (317)
T cd06598 22 NWQEVDDTIKTLREK--------DFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPF 93 (317)
T ss_pred CHHHHHHHHHHHHHh--------CCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCc
Confidence 467788888887764 4787765322123211100 1122 233333556788999999888999999999
Q ss_pred ccc
Q 019755 199 FAI 201 (336)
Q Consensus 199 f~~ 201 (336)
...
T Consensus 94 v~~ 96 (317)
T cd06598 94 VLK 96 (317)
T ss_pred ccC
Confidence 764
No 41
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=49.80 E-value=68 Score=22.88 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=33.4
Q ss_pred CCHHHHHHHHhcCCCCEEEEcCCC-----hHHHHHHhcCCCEEEEecCC
Q 019755 35 PSKPDVIALYNQNNIRRMRLYDPN-----KEALEALRGSNIEVMLGLPN 78 (336)
Q Consensus 35 ~~~~~v~~ll~~~~~~~VRlY~~d-----~~vl~A~~~~gi~V~lGv~~ 78 (336)
-+++++++..+++|++.|=+=+-+ ....+.+++.||+++.|+..
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 457888888888888888776654 45566677889999999854
No 42
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=47.46 E-value=3e+02 Score=27.48 Aligned_cols=93 Identities=15% Similarity=0.148 Sum_probs=49.4
Q ss_pred HHHHHHhcCCCEEEEecCCCCChh----------------hhhc-HHHHHHHHHhhccccC--CCceEEEEEeccccCCC
Q 019755 60 EALEALRGSNIEVMLGLPNDKLQP----------------IASN-QAEANTWVQNNVQNYA--NNVKFKYIAVGNEAKPG 120 (336)
Q Consensus 60 ~vl~A~~~~gi~V~lGv~~~~~~~----------------~~~~-~~~a~~wv~~~v~~~~--~~~~i~~I~VGNE~l~~ 120 (336)
..|+++++.|+..+++.-|+..-- +..+ .++-..-+ ..+.+|+ -+..|+.|.-=||+-..
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YL-a~Vv~~~~~~GI~f~~IsP~NEP~~~ 186 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYL-ADVVKHYKKWGINFDYISPFNEPQWN 186 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHH-HHHHHHHHCTT--EEEEE--S-TTS-
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHH-HHHHHHHHhcCCccceeCCcCCCCCC
Confidence 588888999999888876652110 1111 11111111 1222222 14679999999999875
Q ss_pred C-------c--chHHHHHHHHHHHHHHHhCCCCCceeEeeeeec
Q 019755 121 D-------N--FAQYLVPAMRNIQNAINGANLGSQIKVSTAIEF 155 (336)
Q Consensus 121 ~-------~--~~~~Ll~~i~~vr~aL~~~gl~~~i~VtT~~~~ 155 (336)
. . ..++....|+.++++|++.||.- +|..++..
T Consensus 187 W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t--~I~~~Ea~ 228 (384)
T PF14587_consen 187 WAGGSQEGCHFTNEEQADVIRALDKALKKRGLST--KISACEAG 228 (384)
T ss_dssp GG--SS-B----HHHHHHHHHHHHHHHHHHT-S---EEEEEEES
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCc--eEEecchh
Confidence 1 1 57889999999999999999975 46666553
No 43
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=46.42 E-value=41 Score=30.30 Aligned_cols=89 Identities=21% Similarity=0.285 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhCCCCCceeEeeeeecccccccCCCCCcccccccccch-hHHHHHhhhcCCCceeccC-CCcccCCCCC
Q 019755 129 PAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPIL-DPVITFLNENKSPLLVNLY-PYFAIDGNRQ 206 (336)
Q Consensus 129 ~~i~~vr~aL~~~gl~~~i~VtT~~~~~~~~~s~pPs~~~f~~~~~~~i-~~~~~fl~~~~d~~~vN~y-Pff~~~~~~~ 206 (336)
.+++.+...+...|+.+ |++.+.... +..+ .+.. +++++.+.+++=++.+|+- +.+...
T Consensus 85 ~~~~~l~~~~~~~g~~G-v~l~~~~~~-------------~~~~-~~~~~~~~~~~~~~~~~pv~~H~g~~~~~~~---- 145 (273)
T PF04909_consen 85 DAVEELERALQELGFRG-VKLHPDLGG-------------FDPD-DPRLDDPIFEAAEELGLPVLIHTGMTGFPDA---- 145 (273)
T ss_dssp HHHHHHHHHHHTTTESE-EEEESSETT-------------CCTT-SGHCHHHHHHHHHHHT-EEEEEESHTHHHHH----
T ss_pred hHHHHHHHhccccceee-eEecCCCCc-------------cccc-cHHHHHHHHHHHHhhccceeeeccccchhhh----
Confidence 57777888888888876 876653211 1111 2223 3888888888877777643 111110
Q ss_pred ccccccccccCCCccCCCCCcchhHHHHHHHHHHHHHHHhCCCCCcEEEeeeccC
Q 019755 207 ISLDYALFRSQQPVVSDPPLSYRNLFDAQLDATYAALEKAGGGSLDIVISESGWP 261 (336)
Q Consensus 207 ~~~~~a~f~~~~~~~~d~~~~y~n~fda~~d~~~~al~~~g~~~~~vvVtEtGWP 261 (336)
..-..+...+...+++ +|+++|++.+.|+|
T Consensus 146 -----------------------~~~~~~~~~~~~~~~~--~P~l~ii~~H~G~~ 175 (273)
T PF04909_consen 146 -----------------------PSDPADPEELEELLER--FPDLRIILAHLGGP 175 (273)
T ss_dssp -----------------------HHHHHHHHHHTTHHHH--STTSEEEESGGGTT
T ss_pred -----------------------hHHHHHHHHHHHHHHH--hcCCeEEEecCccc
Confidence 0011112222333334 79999999999999
No 44
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=46.12 E-value=32 Score=30.84 Aligned_cols=36 Identities=19% Similarity=0.385 Sum_probs=31.1
Q ss_pred HHHHhcCCCCEEEEcCCChHHHHHHhcCCCEEEEec
Q 019755 41 IALYNQNNIRRMRLYDPNKEALEALRGSNIEVMLGL 76 (336)
Q Consensus 41 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~gi~V~lGv 76 (336)
.|+|+..|++.||+.+..+.-+.++.+.||+|.=-+
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~~~~ 169 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIVERV 169 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 589999999999999998877889999999997333
No 45
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=46.10 E-value=1.6e+02 Score=25.60 Aligned_cols=79 Identities=14% Similarity=0.107 Sum_probs=40.3
Q ss_pred hHHHHHHhcCCCEEEEecCCCCC----hhhhhcHHHHHHHHHhhc-cccCCCceEEEEEeccccCCCCcchHHHHHHHHH
Q 019755 59 KEALEALRGSNIEVMLGLPNDKL----QPIASNQAEANTWVQNNV-QNYANNVKFKYIAVGNEAKPGDNFAQYLVPAMRN 133 (336)
Q Consensus 59 ~~vl~A~~~~gi~V~lGv~~~~~----~~~~~~~~~a~~wv~~~v-~~~~~~~~i~~I~VGNE~l~~~~~~~~Ll~~i~~ 133 (336)
..+|++|.+.||+|++|++.+.. ...+.+...... +.+.+ ..|..-..+.+-=+-.|.=.. .....+..+.
T Consensus 68 ~~~L~~A~~~Gmkv~~Gl~~~~~~w~~~~~~~~~~~~~~-v~~el~~~yg~h~sf~GWYip~E~~~~---~~~~~~~~~~ 143 (166)
T PF14488_consen 68 EMILDAADKYGMKVFVGLYFDPDYWDQGDLDWEAERNKQ-VADELWQRYGHHPSFYGWYIPYEIDDY---NWNAPERFAL 143 (166)
T ss_pred HHHHHHHHHcCCEEEEeCCCCchhhhccCHHHHHHHHHH-HHHHHHHHHcCCCCCceEEEecccCCc---ccchHHHHHH
Confidence 36788889999999999996521 111111111111 22222 233222356666666776332 2233455555
Q ss_pred HHHHHHhC
Q 019755 134 IQNAINGA 141 (336)
Q Consensus 134 vr~aL~~~ 141 (336)
+.+.|+..
T Consensus 144 l~~~lk~~ 151 (166)
T PF14488_consen 144 LGKYLKQI 151 (166)
T ss_pred HHHHHHHh
Confidence 55555544
No 46
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=45.46 E-value=34 Score=30.51 Aligned_cols=33 Identities=18% Similarity=0.457 Sum_probs=29.5
Q ss_pred HHHHhcCCCCEEEEcCCChHHHHHHhcCCCEEE
Q 019755 41 IALYNQNNIRRMRLYDPNKEALEALRGSNIEVM 73 (336)
Q Consensus 41 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~gi~V~ 73 (336)
.|+|+..|++.||+.+..+.=+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 589999999999999998877888999999987
No 47
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=45.03 E-value=2.4e+02 Score=28.58 Aligned_cols=129 Identities=12% Similarity=0.135 Sum_probs=63.6
Q ss_pred EEEEEeccc-----cC---CCCcchHHHHHHHHHHHHHHHhCCCCCceeEeeeeecccccccCCCCCcccccccccchhH
Q 019755 108 FKYIAVGNE-----AK---PGDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDP 179 (336)
Q Consensus 108 i~~I~VGNE-----~l---~~~~~~~~Ll~~i~~vr~aL~~~gl~~~i~VtT~~~~~~~~~s~pPs~~~f~~~~~~~i~~ 179 (336)
...+.+|=| +| .|+.+.++...+++.+|++.. ++.++|..- -+|| .+-...+..
T Consensus 261 ~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p------~i~i~td~I-----vGfP-------gET~edf~~ 322 (449)
T PRK14332 261 CPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVP------DVGITTDII-----VGFP-------NETEEEFED 322 (449)
T ss_pred cceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCC------CCEEEEEEE-----eeCC-------CCCHHHHHH
Confidence 456777733 33 134478889999999998742 255555321 1233 111234556
Q ss_pred HHHHhhhcCCCceeccCCCcccCCCCCccccccccccCCCccCCCCCcchhHHHHHHHHHHHHHHHhCCCCCcEEEeeec
Q 019755 180 VITFLNENKSPLLVNLYPYFAIDGNRQISLDYALFRSQQPVVSDPPLSYRNLFDAQLDATYAALEKAGGGSLDIVISESG 259 (336)
Q Consensus 180 ~~~fl~~~~d~~~vN~yPff~~~~~~~~~~~~a~f~~~~~~~~d~~~~y~n~fda~~d~~~~al~~~g~~~~~vvVtEtG 259 (336)
.++|+.+ ..+=.+++|+|-...... .+..+. ..........++..+.+-|........++.-++-.+|+|.+.+
T Consensus 323 tl~~v~~-l~~~~~~~f~ys~~~GT~----a~~~~~-~~v~~~~~~~R~~~l~~~~~~~~~~~~~~~vG~~~~vlve~~~ 396 (449)
T PRK14332 323 TLAVVRE-VQFDMAFMFKYSEREGTM----AKRKLP-DNVPEEVKSARLTKLVDLQTSISHEQNRARIGRVYSILIENTS 396 (449)
T ss_pred HHHHHHh-CCCCEEEEEEecCCCCCh----hHHhCc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 7787754 444456777765543221 000111 0111111122455555544443333334443466788887654
Q ss_pred c
Q 019755 260 W 260 (336)
Q Consensus 260 W 260 (336)
.
T Consensus 397 ~ 397 (449)
T PRK14332 397 R 397 (449)
T ss_pred C
Confidence 4
No 48
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=44.92 E-value=1.3e+02 Score=30.07 Aligned_cols=134 Identities=13% Similarity=0.165 Sum_probs=72.5
Q ss_pred chHHHHHHHHHHHHHHHhCCCCCceeEeeeeecccccccCCCCCcccccccccchhHHHHHhhhcCCCceeccCCCcccC
Q 019755 123 FAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAID 202 (336)
Q Consensus 123 ~~~~Ll~~i~~vr~aL~~~gl~~~i~VtT~~~~~~~~~s~pPs~~~f~~~~~~~i~~~~~fl~~~~d~~~vN~yPff~~~ 202 (336)
..+++.+.+++.|+. +||+..-..-.-|...+. .-.|.++.-+-++.+++.|.+.+=-++++++|+....
T Consensus 41 ~~~~v~~~i~~~~~~--------~iP~d~~~iD~~~~~~~~--~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~ 110 (441)
T PF01055_consen 41 NQDEVREVIDRYRSN--------GIPLDVIWIDDDYQDGYG--DFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSND 110 (441)
T ss_dssp SHHHHHHHHHHHHHT--------T--EEEEEE-GGGSBTTB--TT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETT
T ss_pred CHHHHHHHHHHHHHc--------CCCccceecccccccccc--ccccccccccchHHHHHhHhhCCcEEEEEeecccCCC
Confidence 466777777777764 488887653323332221 1122322234578899999999999999999987764
Q ss_pred CCCCccccccccccCCCccCCCCCcchhHHHHHHHHHHHHHHHhCC----CCCcEEEeeeccCCCCCCCCCCCHHHHHHH
Q 019755 203 GNRQISLDYALFRSQQPVVSDPPLSYRNLFDAQLDATYAALEKAGG----GSLDIVISESGWPTAGGDGALTNVDNARTY 278 (336)
Q Consensus 203 ~~~~~~~~~a~f~~~~~~~~d~~~~y~n~fda~~d~~~~al~~~g~----~~~~vvVtEtGWPS~G~~~a~as~~na~~y 278 (336)
.. + | ..++.. . ..|+ ++-...+++. ||-.+.. ..-+-.+++.+
T Consensus 111 ~~-----~-----------------~-~~~~~~-------~-~~~~~v~~~~g~~~~~~~-w~g~~~~-~Dftnp~a~~w 157 (441)
T PF01055_consen 111 SP-----D-----------------Y-ENYDEA-------K-EKGYLVKNPDGSPYIGRV-WPGKGGF-IDFTNPEARDW 157 (441)
T ss_dssp TT-----B-------------------HHHHHH-------H-HTT-BEBCTTSSB-EEEE-TTEEEEE-B-TTSHHHHHH
T ss_pred CC-----c-----------------c-hhhhhH-------h-hcCceeecccCCcccccc-cCCcccc-cCCCChhHHHH
Confidence 21 1 1 122211 1 1121 2235677777 8854431 12333558888
Q ss_pred HHHHHHHHhhCCCCCCCCCceEEEEEE
Q 019755 279 NNNLIQHVKQGSPKKPGRPIETYIFAM 305 (336)
Q Consensus 279 ~~~~~~~~~~gtp~~p~~~~~~~~F~~ 305 (336)
+++.++.+.+ ..+++.+|...
T Consensus 158 ~~~~~~~~~~------~~Gvdg~w~D~ 178 (441)
T PF01055_consen 158 WKEQLKELLD------DYGVDGWWLDF 178 (441)
T ss_dssp HHHHHHHHHT------TST-SEEEEES
T ss_pred HHHHHHHHHh------ccCCceEEeec
Confidence 8777777651 12788998876
No 49
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=44.86 E-value=2.9e+02 Score=26.56 Aligned_cols=110 Identities=14% Similarity=0.153 Sum_probs=64.1
Q ss_pred HHHHHHHhcCCCCEEEEcCC-----------C-------hHHHHHHhcCCCEEEEec--CCCC------Chhh-------
Q 019755 38 PDVIALYNQNNIRRMRLYDP-----------N-------KEALEALRGSNIEVMLGL--PNDK------LQPI------- 84 (336)
Q Consensus 38 ~~v~~ll~~~~~~~VRlY~~-----------d-------~~vl~A~~~~gi~V~lGv--~~~~------~~~~------- 84 (336)
.+.++.+|..|++.|-+|-. | ...|+.|++.||.|+|=. |... ++.+
T Consensus 27 ~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~~~~~ 106 (319)
T PF01301_consen 27 RDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLRKPDI 106 (319)
T ss_dssp HHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGGSTTS
T ss_pred HHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhccccc
Confidence 45678889999999999963 1 367888899999988632 2211 1111
Q ss_pred --hh----cHHHHHHHHHhh---ccccC--CCceEEEEEeccccCCCCcchHHHHHHHHHHHHHHHhCCCCCceeEeee
Q 019755 85 --AS----NQAEANTWVQNN---VQNYA--NNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINGANLGSQIKVSTA 152 (336)
Q Consensus 85 --~~----~~~~a~~wv~~~---v~~~~--~~~~i~~I~VGNE~l~~~~~~~~Ll~~i~~vr~aL~~~gl~~~i~VtT~ 152 (336)
.+ -.++...|...- +.++. .+..|..+-|-||.-. ...-.++|+.+++..++.+... +...|.
T Consensus 107 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg~----~~~~~~Y~~~l~~~~~~~g~~~-~~~~t~ 180 (319)
T PF01301_consen 107 RLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYGS----YGTDRAYMEALKDAYRDWGIDP-VLLYTT 180 (319)
T ss_dssp -SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGGC----TSS-HHHHHHHHHHHHHTT-SS-SBEEEE
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhCC----CcccHhHHHHHHHHHHHhhCcc-ceeecc
Confidence 11 112445555432 33332 2357999999999852 2344678888899999988764 444443
No 50
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=43.72 E-value=63 Score=29.73 Aligned_cols=81 Identities=15% Similarity=0.207 Sum_probs=45.1
Q ss_pred HHHHHHhcCCCEEEEecCCCCCh---hhhhcHHHHHHHHHhhccccCCCceEEEEEeccccCCCCcchHHHHHHHHHHHH
Q 019755 60 EALEALRGSNIEVMLGLPNDKLQ---PIASNQAEANTWVQNNVQNYANNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQN 136 (336)
Q Consensus 60 ~vl~A~~~~gi~V~lGv~~~~~~---~~~~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~~~~~~~Ll~~i~~vr~ 136 (336)
..++++++.|+||++.|...... .+..+.+...+++ +++..+.....+.+|-+==|-... ..+.....|+++|+
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi-~~lv~~~~~~~~DGIdiDwE~~~~--~~~~~~~fv~~Lr~ 126 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALV-DKIINYVVSYNLDGIDVDLEGPDV--TFGDYLVFIRALYA 126 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHH-HHHHHHHHHhCCCceeEEeeccCc--cHhHHHHHHHHHHH
Confidence 45677788899999888654322 1223333222222 333322222235555555554321 14567788999999
Q ss_pred HHHhCCC
Q 019755 137 AINGANL 143 (336)
Q Consensus 137 aL~~~gl 143 (336)
+|+..|+
T Consensus 127 ~l~~~~~ 133 (253)
T cd06545 127 ALKKEGK 133 (253)
T ss_pred HHhhcCc
Confidence 9987664
No 51
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=43.32 E-value=42 Score=32.06 Aligned_cols=86 Identities=16% Similarity=0.220 Sum_probs=56.6
Q ss_pred CceEEEEEeccccCC----CC---c--chHHHHHHHHHHHHHHHhCCCCCceeEeeeeecccccccCCCCCc----cccc
Q 019755 105 NVKFKYIAVGNEAKP----GD---N--FAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAG----SFKQ 171 (336)
Q Consensus 105 ~~~i~~I~VGNE~l~----~~---~--~~~~Ll~~i~~vr~aL~~~gl~~~i~VtT~~~~~~~~~s~pPs~~----~f~~ 171 (336)
+..|.+..||+|..- |+ . .++.|..-+.+||+.| | ..++||-+-.|+.+.. +.|..| .|.
T Consensus 17 aggVdaF~IGSEl~gLT~iR~~~~~fPaV~~l~~LAa~VR~il---G--~~~kitYAADWsEY~~-~~p~dg~gd~~f~- 89 (299)
T PF13547_consen 17 AGGVDAFCIGSELRGLTRIRDGAGSFPAVEALRALAADVRAIL---G--PGTKITYAADWSEYFG-YQPADGSGDVYFH- 89 (299)
T ss_pred cCCCcEEEEchhhhhheeecCCCCCCcHHHHHHHHHHHHHHHh---C--CCceEEEeccCHHhcC-cCCCCCCCccccc-
Confidence 356899999999652 32 1 3578999999999887 3 3489999988887753 555543 333
Q ss_pred ccccchhHHHHHhhhcCCCceeccCCCcccCCC
Q 019755 172 AYRPILDPVITFLNENKSPLLVNLYPYFAIDGN 204 (336)
Q Consensus 172 ~~~~~i~~~~~fl~~~~d~~~vN~yPff~~~~~ 204 (336)
|.|+. -.+..|+++|+.|.=.+-..+
T Consensus 90 -----LDpLW--a~~~IDfIGID~Y~PLSDwrd 115 (299)
T PF13547_consen 90 -----LDPLW--ADPNIDFIGIDNYFPLSDWRD 115 (299)
T ss_pred -----Ccccc--cCCcCCEEEeecccccCCCCC
Confidence 22332 235678889988865544333
No 52
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=42.61 E-value=88 Score=30.62 Aligned_cols=140 Identities=14% Similarity=0.237 Sum_probs=77.7
Q ss_pred ecCCCCCCCCHHH---HHHHHhcCCCCEEEEcCC------------ChHHHHHHhcCCCEEEE--------ecCCCCChh
Q 019755 27 YGMLGDNLPSKPD---VIALYNQNNIRRMRLYDP------------NKEALEALRGSNIEVML--------GLPNDKLQP 83 (336)
Q Consensus 27 Y~~~~~~~~~~~~---v~~ll~~~~~~~VRlY~~------------d~~vl~A~~~~gi~V~l--------Gv~~~~~~~ 83 (336)
|.|.+=| |+++| +++.++++ +..-+|+. |.-.++-+-+.|+.+++ |++++....
T Consensus 188 hNPTGmD-PT~EQW~qia~vik~k--~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfGlYneRvGn 264 (410)
T KOG1412|consen 188 HNPTGMD-PTREQWKQIADVIKSK--NLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFGLYNERVGN 264 (410)
T ss_pred cCCCCCC-CCHHHHHHHHHHHHhc--CceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhcccccccccc
Confidence 6677655 66776 45566665 45556653 24577777788887775 566654332
Q ss_pred hh---hcHHHHHHHHHhh--------ccc--cCCCceEEEEEeccccCCCC-------cchHHHHHHHHHHHHHHHhCCC
Q 019755 84 IA---SNQAEANTWVQNN--------VQN--YANNVKFKYIAVGNEAKPGD-------NFAQYLVPAMRNIQNAINGANL 143 (336)
Q Consensus 84 ~~---~~~~~a~~wv~~~--------v~~--~~~~~~i~~I~VGNE~l~~~-------~~~~~Ll~~i~~vr~aL~~~gl 143 (336)
+. .+.+ ...-|++. +.. -|.+.+|. |+|... .+...+..-|+..|++|++.
T Consensus 265 ltvv~~n~a-~i~~v~SQl~lviR~~~SNPPAyGArIV~------kvL~tP~lre~W~~sik~MssRI~~MR~aLrd~-- 335 (410)
T KOG1412|consen 265 LTVVVNNPA-VIAGVKSQLTLVIRSNWSNPPAYGARIVH------KVLSTPELREQWIQSIKTMSSRIKKMRTALRDH-- 335 (410)
T ss_pred eEEEecChh-HHHHHHHHHHHHHhhccCCCcchhhHHHH------HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 11 2221 11112222 111 01222232 555432 15678888899999999865
Q ss_pred CCceeEeeeeecccccccCCCCCcccccccccchhHHHHHhhh
Q 019755 144 GSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNE 186 (336)
Q Consensus 144 ~~~i~VtT~~~~~~~~~s~pPs~~~f~~~~~~~i~~~~~fl~~ 186 (336)
-+..+|+-+|+.+.+ ..|.|. ........+|+|.+
T Consensus 336 --L~aL~TPGtWDHI~~----QiGMFS--yTGLtp~qV~~li~ 370 (410)
T KOG1412|consen 336 --LVALKTPGTWDHITQ----QIGMFS--YTGLTPAQVDHLIE 370 (410)
T ss_pred --HHhcCCCCcHHHHHh----hcccee--ecCCCHHHHHHHHH
Confidence 267899999986644 234442 11233456788764
No 53
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=42.25 E-value=1.3e+02 Score=29.83 Aligned_cols=61 Identities=11% Similarity=0.181 Sum_probs=34.9
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCCceeEeeeeecccccccCCCCCcccccccccchhHHHHHhhhcCCCceeccCCCccc
Q 019755 122 NFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAI 201 (336)
Q Consensus 122 ~~~~~Ll~~i~~vr~aL~~~gl~~~i~VtT~~~~~~~~~s~pPs~~~f~~~~~~~i~~~~~fl~~~~d~~~vN~yPff~~ 201 (336)
.+.++..++++.+|+.. .| +.+++..-. ++| . +-.+.+...++|+.+. .+-.+++|||--.
T Consensus 270 ~~~~~~~~~v~~l~~~~--~g----i~i~~~~Iv-----G~P-g------ET~ed~~~tl~~i~~~-~~~~~~~~~~sp~ 330 (414)
T TIGR01579 270 YTRDDFLKLVNKLRSVR--PD----YAFGTDIIV-----GFP-G------ESEEDFQETLRMVKEI-EFSHLHIFPYSAR 330 (414)
T ss_pred CCHHHHHHHHHHHHHhC--CC----CeeeeeEEE-----ECC-C------CCHHHHHHHHHHHHhC-CCCEEEeeecCCC
Confidence 46678888888888742 12 556554322 232 1 1123456778888654 3556677776443
No 54
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=40.18 E-value=1.1e+02 Score=31.28 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCCCEEEEcC-------C-----C-------hHHHHHHhcCCCEEEEecCCCCChh
Q 019755 38 PDVIALYNQNNIRRMRLYD-------P-----N-------KEALEALRGSNIEVMLGLPNDKLQP 83 (336)
Q Consensus 38 ~~v~~ll~~~~~~~VRlY~-------~-----d-------~~vl~A~~~~gi~V~lGv~~~~~~~ 83 (336)
+++++|++..|++.-|+== . + .+++.+|.+.||+-++.+..-+++-
T Consensus 56 ~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 120 (467)
T TIGR01233 56 PVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPE 120 (467)
T ss_pred HHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcH
Confidence 6688999998887777421 1 2 3689999999999999999877664
No 55
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=39.44 E-value=70 Score=26.84 Aligned_cols=43 Identities=12% Similarity=0.211 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCCCEEEEcCC---------------------C--hHHHHHHhcCCCEEEEecCCC
Q 019755 37 KPDVIALYNQNNIRRMRLYDP---------------------N--KEALEALRGSNIEVMLGLPND 79 (336)
Q Consensus 37 ~~~v~~ll~~~~~~~VRlY~~---------------------d--~~vl~A~~~~gi~V~lGv~~~ 79 (336)
++++++.|+..+++.|-+|.- | .++++|+.+.||+|++-+-..
T Consensus 2 ~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 2 PEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 566777777777777777642 2 368899999999999887654
No 56
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=38.61 E-value=1.8e+02 Score=29.54 Aligned_cols=64 Identities=11% Similarity=0.161 Sum_probs=39.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHhCCCCCceeEeeeeecccccccCCCCCcccccccccchhHHHHHhhhcCCCceeccCCC
Q 019755 119 PGDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPY 198 (336)
Q Consensus 119 ~~~~~~~~Ll~~i~~vr~aL~~~gl~~~i~VtT~~~~~~~~~s~pPs~~~f~~~~~~~i~~~~~fl~~~~d~~~vN~yPf 198 (336)
.|+.+.++.++.++.+|+.+....++.++=|+-+-. +...| ...++|+ +..-+=.+|+++|
T Consensus 274 ~R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVGFPgE----------TeedF--------e~tl~lv-~e~~fd~~~~F~Y 334 (437)
T COG0621 274 KRGYTVEEYLEIIEKLRAARPDIAISTDIIVGFPGE----------TEEDF--------EETLDLV-EEVRFDRLHVFKY 334 (437)
T ss_pred CCCcCHHHHHHHHHHHHHhCCCceEeccEEEECCCC----------CHHHH--------HHHHHHH-HHhCCCEEeeeec
Confidence 355678899999999999876555444444443311 11122 2445554 5566778899998
Q ss_pred ccc
Q 019755 199 FAI 201 (336)
Q Consensus 199 f~~ 201 (336)
=..
T Consensus 335 SpR 337 (437)
T COG0621 335 SPR 337 (437)
T ss_pred CCC
Confidence 544
No 57
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=38.25 E-value=73 Score=23.44 Aligned_cols=42 Identities=12% Similarity=0.264 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhccccCCCceEEEEEeccccCCCCc----chHHHHHHHHHHHHHHHhC
Q 019755 88 QAEANTWVQNNVQNYANNVKFKYIAVGNEAKPGDN----FAQYLVPAMRNIQNAINGA 141 (336)
Q Consensus 88 ~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~~~----~~~~Ll~~i~~vr~aL~~~ 141 (336)
.+....|+++||.- |++.++.++ .-..|+|+|+..++.++..
T Consensus 10 L~iLi~WLedNi~~------------es~iiFDNded~tdSa~llp~ie~a~~~~r~l 55 (65)
T PF06117_consen 10 LEILIAWLEDNIDC------------ESDIIFDNDEDKTDSAALLPAIEQARADVRPL 55 (65)
T ss_pred HHHHHHHHHcccCC------------CCCeeecCCCcccchHHHHHHHHHHHHHHHHH
Confidence 34567899988753 556666431 4578999999998887643
No 58
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=36.59 E-value=4e+02 Score=26.74 Aligned_cols=73 Identities=15% Similarity=0.225 Sum_probs=39.3
Q ss_pred EEEEEeccccCC--------CCcchHHHHHHHHHHHHHHHhCCCCCceeEeeeeecccccccCCCCCcccccccccchhH
Q 019755 108 FKYIAVGNEAKP--------GDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDP 179 (336)
Q Consensus 108 i~~I~VGNE~l~--------~~~~~~~Ll~~i~~vr~aL~~~gl~~~i~VtT~~~~~~~~~s~pPs~~~f~~~~~~~i~~ 179 (336)
+..+.+|=|-.. |+...++.+..++.+|++. . ++.+++..-. .+| |+ -...+.+
T Consensus 247 ~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~----~--~i~i~~d~Iv-----G~P---gE----t~ed~~~ 308 (440)
T PRK14334 247 CEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREAL----P--DVVLSTDIIV-----GFP---GE----TEEDFQE 308 (440)
T ss_pred CCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhC----C--CcEEEEeEEE-----ECC---CC----CHHHHHH
Confidence 445666644432 2346778888888888763 2 2455553321 232 11 1233556
Q ss_pred HHHHhhhcCCCceeccCCCc
Q 019755 180 VITFLNENKSPLLVNLYPYF 199 (336)
Q Consensus 180 ~~~fl~~~~d~~~vN~yPff 199 (336)
.++|+.+. .+-.+++|+|-
T Consensus 309 tl~~i~~l-~~~~i~~f~ys 327 (440)
T PRK14334 309 TLSLYDEV-GYDSAYMFIYS 327 (440)
T ss_pred HHHHHHhc-CCCEeeeeEee
Confidence 77887543 35556677653
No 59
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=36.26 E-value=81 Score=30.67 Aligned_cols=74 Identities=19% Similarity=0.226 Sum_probs=49.5
Q ss_pred hHHHHHHhcCC-CEEEEecCCCCChhhhhcHHHHHHHHHhhccccCCCceEEEEEeccccCCCCcchHHHHHHHHHHHHH
Q 019755 59 KEALEALRGSN-IEVMLGLPNDKLQPIASNQAEANTWVQNNVQNYANNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNA 137 (336)
Q Consensus 59 ~~vl~A~~~~g-i~V~lGv~~~~~~~~~~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~~~~~~~Ll~~i~~vr~a 137 (336)
..||+++...| +++ +|=.-.+ .| .++.|++|+...+..++ ..|.+|+--|.-...| +-++
T Consensus 175 m~VLkp~idsGkik~-~Ge~~~d--~W--~ps~Aq~~men~lta~~--~~vdaVvA~nDgtagG------------aI~a 235 (341)
T COG4213 175 MKVLKPLIDSGKIKV-VGEQWTD--GW--LPSNAQQIMENLLTANY--NDIDAVVAPNDGTAGG------------AIAA 235 (341)
T ss_pred HHHHHHHhhCCceEE-eeecccc--cc--CHHHHHHHHHHHHhccc--CceeEEEcCCCchhHH------------HHHH
Confidence 47899988887 666 5543212 33 45667788877777763 4588888877743222 2346
Q ss_pred HHhCCCCCceeEee
Q 019755 138 INGANLGSQIKVST 151 (336)
Q Consensus 138 L~~~gl~~~i~VtT 151 (336)
|+..||.+++|||=
T Consensus 236 L~a~Gl~g~vpVsG 249 (341)
T COG4213 236 LKAQGLAGKVPVSG 249 (341)
T ss_pred HHhcccCCCCcccC
Confidence 77889998899774
No 60
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=34.61 E-value=3.4e+02 Score=28.16 Aligned_cols=74 Identities=15% Similarity=0.181 Sum_probs=40.3
Q ss_pred EEEEEeccccCC--------CCcchHHHHHHHHHHHHHHHhCCCCCceeEeeeeecccccccCCCCCcccccccccchhH
Q 019755 108 FKYIAVGNEAKP--------GDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDP 179 (336)
Q Consensus 108 i~~I~VGNE~l~--------~~~~~~~Ll~~i~~vr~aL~~~gl~~~i~VtT~~~~~~~~~s~pPs~~~f~~~~~~~i~~ 179 (336)
+..+.+|=|-.. |+.+.++.+..++.+|+.+. .+.++|..- -+|| | +-.+.+.+
T Consensus 322 ~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p------~i~i~tdiI-----vGfP---g----ET~edf~~ 383 (509)
T PRK14327 322 VEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIP------NVALTTDII-----VGFP---N----ETDEQFEE 383 (509)
T ss_pred cceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC------CcEEeeeEE-----EeCC---C----CCHHHHHH
Confidence 455666655432 23467888899999988632 256665432 1233 1 11233456
Q ss_pred HHHHhhhcCCCceeccCCCcc
Q 019755 180 VITFLNENKSPLLVNLYPYFA 200 (336)
Q Consensus 180 ~~~fl~~~~d~~~vN~yPff~ 200 (336)
-++|+.+ ..+-.+++|+|--
T Consensus 384 Tl~~v~~-l~~d~~~~f~ysp 403 (509)
T PRK14327 384 TLSLYRE-VGFDHAYTFIYSP 403 (509)
T ss_pred HHHHHHH-cCCCeEEEeeeeC
Confidence 6777754 3334466666543
No 61
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=34.35 E-value=49 Score=32.83 Aligned_cols=35 Identities=14% Similarity=0.267 Sum_probs=29.7
Q ss_pred HHHHhcCCCCEEEEcCCChHHHHHHhcCCCEEEEec
Q 019755 41 IALYNQNNIRRMRLYDPNKEALEALRGSNIEVMLGL 76 (336)
Q Consensus 41 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~gi~V~lGv 76 (336)
.++|+..|+++|||. ++|.=+.++.+.||+|.==+
T Consensus 331 AqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~~~v 365 (369)
T PRK12485 331 AQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVVESI 365 (369)
T ss_pred HHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEEEEe
Confidence 589999999999999 67877888899999987433
No 62
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=33.92 E-value=65 Score=28.73 Aligned_cols=37 Identities=30% Similarity=0.518 Sum_probs=31.0
Q ss_pred HHHHhcCCCCEEEEcCCChHHHHHHhcCCCEEEEecC
Q 019755 41 IALYNQNNIRRMRLYDPNKEALEALRGSNIEVMLGLP 77 (336)
Q Consensus 41 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~gi~V~lGv~ 77 (336)
.|+|+..|++.+|+.+..+.=+.++.+-|++|.=-++
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv~~~~ 169 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVVERVP 169 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 5899999999999999987778888999999874443
No 63
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=33.53 E-value=3.8e+02 Score=27.15 Aligned_cols=61 Identities=18% Similarity=0.197 Sum_probs=34.1
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCCceeEeeeeecccccccCCCCCcccccccccchhHHHHHhhhcCCCceeccCCCcc
Q 019755 121 DNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFA 200 (336)
Q Consensus 121 ~~~~~~Ll~~i~~vr~aL~~~gl~~~i~VtT~~~~~~~~~s~pPs~~~f~~~~~~~i~~~~~fl~~~~d~~~vN~yPff~ 200 (336)
+.+.++.+..++.+|+.+ . .+.+++..-. ++| |+ -...+...++|+.+. .+-.+++++|--
T Consensus 286 ~~t~e~~~~~i~~lr~~~-----p-gi~i~~d~Iv-----G~P---gE----T~ed~~~ti~~l~~l-~~~~v~i~~ysp 346 (459)
T PRK14338 286 GYTVARYRELIARIREAI-----P-DVSLTTDIIV-----GHP---GE----TEEQFQRTYDLLEEI-RFDKVHIAAYSP 346 (459)
T ss_pred CCCHHHHHHHHHHHHHhC-----C-CCEEEEEEEE-----ECC---CC----CHHHHHHHHHHHHHc-CCCEeEEEecCC
Confidence 346788888888888753 1 2566654322 222 11 123456778887653 344566677643
No 64
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=32.44 E-value=56 Score=32.41 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=30.7
Q ss_pred HHHHhcCCCCEEEEcCCChHHHHHHhcCCCEEEEecC
Q 019755 41 IALYNQNNIRRMRLYDPNKEALEALRGSNIEVMLGLP 77 (336)
Q Consensus 41 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~gi~V~lGv~ 77 (336)
.++|+..|+++|||.+ +|.=+.++.+.||+|.==++
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~~ 363 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYVP 363 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEec
Confidence 5899999999999998 88888888999999874443
No 65
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=32.37 E-value=64 Score=32.22 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=33.1
Q ss_pred HHHHhcCCCCEEEEcCCChHHHHHHhcCCCEEEEecCC
Q 019755 41 IALYNQNNIRRMRLYDPNKEALEALRGSNIEVMLGLPN 78 (336)
Q Consensus 41 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~gi~V~lGv~~ 78 (336)
.++|+..|+++||+.+.++.=+.++.+.||+|.--++.
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vpl 357 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVPL 357 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 58999999999999999998888999999999855554
No 66
>PF14903 WG_beta_rep: WG containing repeat
Probab=31.75 E-value=32 Score=21.03 Aligned_cols=16 Identities=13% Similarity=0.468 Sum_probs=12.9
Q ss_pred eeeecCCCCceeeccc
Q 019755 320 WGLFAPDKQPKYQVNF 335 (336)
Q Consensus 320 wGlf~~d~~~Ky~l~~ 335 (336)
||+++.+|+...+..|
T Consensus 1 ~G~id~~G~~vi~~~y 16 (35)
T PF14903_consen 1 WGYIDKNGKIVIPPKY 16 (35)
T ss_pred CEEEeCCCCEEEEccc
Confidence 8999999988776654
No 67
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=31.65 E-value=63 Score=31.69 Aligned_cols=33 Identities=12% Similarity=0.329 Sum_probs=29.6
Q ss_pred HHHHhcCCCCEEEEcCCC-hHHHHHHhcCCCEEE
Q 019755 41 IALYNQNNIRRMRLYDPN-KEALEALRGSNIEVM 73 (336)
Q Consensus 41 ~~ll~~~~~~~VRlY~~d-~~vl~A~~~~gi~V~ 73 (336)
.++|+..|+++|||.+.+ |.=+.++.+.||+|.
T Consensus 301 aqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 301 AQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 589999999999999998 887888999999885
No 68
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=31.14 E-value=1.1e+02 Score=25.51 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCCCEEEEcCCChHHHHHHhcCCCEEEEecC
Q 019755 38 PDVIALYNQNNIRRMRLYDPNKEALEALRGSNIEVMLGLP 77 (336)
Q Consensus 38 ~~v~~ll~~~~~~~VRlY~~d~~vl~A~~~~gi~V~lGv~ 77 (336)
..+.++|+.+|++.|=+...-+..+++|++.||+|+.+-.
T Consensus 55 ~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 55 IRIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 4578999999999998888889999999999999999977
No 69
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=31.05 E-value=3.6e+02 Score=26.92 Aligned_cols=60 Identities=12% Similarity=0.155 Sum_probs=34.6
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCCceeEeeeeecccccccCCCCCcccccccccchhHHHHHhhhcCCCceeccCCCcc
Q 019755 122 NFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFA 200 (336)
Q Consensus 122 ~~~~~Ll~~i~~vr~aL~~~gl~~~i~VtT~~~~~~~~~s~pPs~~~f~~~~~~~i~~~~~fl~~~~d~~~vN~yPff~ 200 (336)
...+++.++++.+|+.+. .+.++|..- .+|| |+ -...+...++|+.+. .+-.+|+++|-.
T Consensus 256 ~~~~~~~~~i~~lr~~~p------gi~i~~d~I-----vGfP---GE----T~edf~~tl~fi~~~-~~~~~~v~~ysp 315 (418)
T PRK14336 256 YTNQQYRELVERLKTAMP------DISLQTDLI-----VGFP---SE----TEEQFNQSYKLMADI-GYDAIHVAAYSP 315 (418)
T ss_pred CCHHHHHHHHHHHHhhCC------CCEEEEEEE-----EECC---CC----CHHHHHHHHHHHHhc-CCCEEEeeecCC
Confidence 467888899999888632 266665432 2233 11 123456778887653 334456666543
No 70
>PRK08815 GTP cyclohydrolase; Provisional
Probab=30.78 E-value=70 Score=31.80 Aligned_cols=38 Identities=32% Similarity=0.368 Sum_probs=32.4
Q ss_pred HHHHhcCCCCEEEEcCCChHHHHHHhcCCCEEEEecCC
Q 019755 41 IALYNQNNIRRMRLYDPNKEALEALRGSNIEVMLGLPN 78 (336)
Q Consensus 41 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~gi~V~lGv~~ 78 (336)
.|+|+..|+++||+.+.++.=+.++.+.||+|.=-++.
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp~ 342 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIRV 342 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 58999999999999999988788899999999744443
No 71
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=30.74 E-value=4.4e+02 Score=25.01 Aligned_cols=83 Identities=17% Similarity=0.217 Sum_probs=42.2
Q ss_pred HHHHHHhc--CCCEEE--E--ecCCCC-ChhhhhcHHHHHHHHHhhccccCCCceEEEEEecc-ccCCC-C--cchHHHH
Q 019755 60 EALEALRG--SNIEVM--L--GLPNDK-LQPIASNQAEANTWVQNNVQNYANNVKFKYIAVGN-EAKPG-D--NFAQYLV 128 (336)
Q Consensus 60 ~vl~A~~~--~gi~V~--l--Gv~~~~-~~~~~~~~~~a~~wv~~~v~~~~~~~~i~~I~VGN-E~l~~-~--~~~~~Ll 128 (336)
..+.++++ .++||+ + |=|... ...+..+.+.-.+. .+++..+.....+.+|-+=- |.... + +....++
T Consensus 55 ~~~~~lk~~~~~lkvlp~i~~gg~~~~~f~~~~~~~~~R~~f-i~s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~ 133 (318)
T cd02876 55 GWIEEVRKANKNIKILPRVLFEGWSYQDLQSLLNDEQEREKL-IKLLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELI 133 (318)
T ss_pred HHHHHHHhhCCCcEEEeEEEECCCCHHHHHHHHcCHHHHHHH-HHHHHHHHHHcCCCcEEEechhhhcccCCHHHHHHHH
Confidence 44555554 469998 4 334322 12233343322222 23333332223455665531 21111 1 2456788
Q ss_pred HHHHHHHHHHHhCCC
Q 019755 129 PAMRNIQNAINGANL 143 (336)
Q Consensus 129 ~~i~~vr~aL~~~gl 143 (336)
.-|+++|++|.+.|+
T Consensus 134 ~~l~el~~~l~~~~~ 148 (318)
T cd02876 134 QLVIHLGETLHSANL 148 (318)
T ss_pred HHHHHHHHHHhhcCC
Confidence 999999999988764
No 72
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=30.34 E-value=1.6e+02 Score=30.59 Aligned_cols=81 Identities=17% Similarity=0.344 Sum_probs=53.9
Q ss_pred HhCCCCCcEEEeeeccCCCCCC--------CCCCCHHHHHHHHHHHHHHHh-hCCCCCCCCCceEEEEEEecC-CCcCCC
Q 019755 245 KAGGGSLDIVISESGWPTAGGD--------GALTNVDNARTYNNNLIQHVK-QGSPKKPGRPIETYIFAMFDE-KDKQGA 314 (336)
Q Consensus 245 ~~g~~~~~vvVtEtGWPS~G~~--------~a~as~~na~~y~~~~~~~~~-~gtp~~p~~~~~~~~F~~fDe-~wK~~~ 314 (336)
|-.|.|.+|.|+|-|-+..... .-..-++..+.|++.+.+.+. .|. +-.-+|..++-|- .|. .
T Consensus 402 K~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~dgv-----nv~GYf~WSLmDnfEw~--~ 474 (524)
T KOG0626|consen 402 KDKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKEDGV-----NVKGYFVWSLLDNFEWL--D 474 (524)
T ss_pred HhhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHhcCC-----ceeeEEEeEcccchhhh--c
Confidence 3357899999999999987541 123455677777777777664 343 1234788887763 444 3
Q ss_pred ccccceeeecC------CCCceee
Q 019755 315 EIERHWGLFAP------DKQPKYQ 332 (336)
Q Consensus 315 ~~E~~wGlf~~------d~~~Ky~ 332 (336)
+..-.||||.- .|.||-+
T Consensus 475 Gy~~RFGlyyVDf~d~l~R~pK~S 498 (524)
T KOG0626|consen 475 GYKVRFGLYYVDFKDPLKRYPKLS 498 (524)
T ss_pred CcccccccEEEeCCCCCcCCchhH
Confidence 46789999984 5666644
No 73
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=30.01 E-value=2.1e+02 Score=27.11 Aligned_cols=79 Identities=14% Similarity=0.271 Sum_probs=41.7
Q ss_pred HHHHhc--CCCEEEEecCCCC----ChhhhhcHHHHHHHHHhhccccCCCceEEEEEeccccCCCC-cchHHHHHHHHHH
Q 019755 62 LEALRG--SNIEVMLGLPNDK----LQPIASNQAEANTWVQNNVQNYANNVKFKYIAVGNEAKPGD-NFAQYLVPAMRNI 134 (336)
Q Consensus 62 l~A~~~--~gi~V~lGv~~~~----~~~~~~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~~-~~~~~Ll~~i~~v 134 (336)
+.++++ .++||++.|-... ...+..+.+.-.+ +.+++..+.....+++|-+==|..... .....+...|+.+
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~-fi~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~l 135 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKK-FIDSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKEL 135 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHH-HHHHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHH
Confidence 444554 4899999775421 1223333222222 222332222223466777754544321 3345788889999
Q ss_pred HHHHHhC
Q 019755 135 QNAINGA 141 (336)
Q Consensus 135 r~aL~~~ 141 (336)
|+.|.+.
T Consensus 136 r~~l~~~ 142 (334)
T smart00636 136 REALDKE 142 (334)
T ss_pred HHHHHHh
Confidence 9999764
No 74
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=29.82 E-value=75 Score=31.90 Aligned_cols=37 Identities=24% Similarity=0.418 Sum_probs=32.0
Q ss_pred HHHHhcCCCCEEEEcCCChHHHHHHhcCCCEEEEecC
Q 019755 41 IALYNQNNIRRMRLYDPNKEALEALRGSNIEVMLGLP 77 (336)
Q Consensus 41 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~gi~V~lGv~ 77 (336)
.++|+..|+++||+.+.++.=+.++.+.||+|.=-++
T Consensus 339 aqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 339 AQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 5899999999999999998888889999999974444
No 75
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=29.51 E-value=74 Score=32.44 Aligned_cols=37 Identities=24% Similarity=0.422 Sum_probs=32.1
Q ss_pred HHHHhcCCCCEEEEcCCChHHHHHHhcCCCEEEEecC
Q 019755 41 IALYNQNNIRRMRLYDPNKEALEALRGSNIEVMLGLP 77 (336)
Q Consensus 41 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~gi~V~lGv~ 77 (336)
.++|+..|+++||+.+.++.=+.++.+.||+|.=-++
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 5899999999999999998888899999999974444
No 76
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=29.09 E-value=5.9e+02 Score=25.41 Aligned_cols=61 Identities=11% Similarity=0.221 Sum_probs=34.1
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCCceeEeeeeecccccccCCCCCcccccccccchhHHHHHhhhcCCCceeccCCCcc
Q 019755 121 DNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFA 200 (336)
Q Consensus 121 ~~~~~~Ll~~i~~vr~aL~~~gl~~~i~VtT~~~~~~~~~s~pPs~~~f~~~~~~~i~~~~~fl~~~~d~~~vN~yPff~ 200 (336)
+.+.++.+.+++.+|+... .+.++|.. + -+|| .+-.+.+.+.++|+.+ ..+-.+++|+|-.
T Consensus 261 ~~t~~~~~~~v~~lr~~~p------~i~i~~d~----I-vGfP-------gETeedf~~Tl~fl~~-l~~~~~~~f~~sp 321 (420)
T PRK14339 261 GYTKEWFLNRAEKLRALVP------EVSISTDI----I-VGFP-------GESDKDFEDTMDVLEK-VRFEQIFSFKYSP 321 (420)
T ss_pred CCCHHHHHHHHHHHHHHCC------CCEEEEEE----E-EECC-------CCCHHHHHHHHHHHHh-cCCCEEeeEecCC
Confidence 3467788888888887632 25666632 1 2343 1112345677788754 3344467776433
No 77
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=28.67 E-value=3.4e+02 Score=28.80 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=29.0
Q ss_pred HHHHHhcCCCCEEEEcCCC------hHHHHHHhcCCCEEEEecCCC
Q 019755 40 VIALYNQNNIRRMRLYDPN------KEALEALRGSNIEVMLGLPND 79 (336)
Q Consensus 40 v~~ll~~~~~~~VRlY~~d------~~vl~A~~~~gi~V~lGv~~~ 79 (336)
++++...+|++.+|+|++- ...++++++.|+.+...+-..
T Consensus 101 ~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt 146 (596)
T PRK14042 101 FVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYT 146 (596)
T ss_pred HHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEec
Confidence 3456677899999999963 245667788998877775443
No 78
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=28.59 E-value=79 Score=33.07 Aligned_cols=38 Identities=29% Similarity=0.462 Sum_probs=33.3
Q ss_pred HHHHhcCCCCEEEEcCCChHHHHHHhcCCCEEEEecCC
Q 019755 41 IALYNQNNIRRMRLYDPNKEALEALRGSNIEVMLGLPN 78 (336)
Q Consensus 41 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~gi~V~lGv~~ 78 (336)
.++|+..|+++|||.+.+|.=+.++++.||+|.--++.
T Consensus 343 AQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvpl 380 (555)
T PRK09319 343 AQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVPL 380 (555)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 58999999999999999998899999999998855543
No 79
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=28.17 E-value=2.4e+02 Score=26.95 Aligned_cols=78 Identities=10% Similarity=0.204 Sum_probs=40.6
Q ss_pred HHHHHhcCCCEEEEecCCCCChhhhhcHHHHHHHHHhhccccCCCceEEEEEeccccCCCC----cchHHHHHHHHHHHH
Q 019755 61 ALEALRGSNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQNYANNVKFKYIAVGNEAKPGD----NFAQYLVPAMRNIQN 136 (336)
Q Consensus 61 vl~A~~~~gi~V~lGv~~~~~~~~~~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~~----~~~~~Ll~~i~~vr~ 136 (336)
-++.+++.|+||++.+--........+..... -+.+++..+...-.+++|-+==|.-... .....++..++.+|+
T Consensus 65 ~i~~~q~~G~KVllSiGG~~~~~~~~~~~~~~-~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~ 143 (312)
T cd02871 65 DIKALQAKGKKVLISIGGANGHVDLNHTAQED-NFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLKD 143 (312)
T ss_pred HHHHHHHCCCEEEEEEeCCCCccccCCHHHHH-HHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHHH
Confidence 35567788999999885322111111111111 1223333322223466666655543211 134788899999998
Q ss_pred HHH
Q 019755 137 AIN 139 (336)
Q Consensus 137 aL~ 139 (336)
.+.
T Consensus 144 ~~~ 146 (312)
T cd02871 144 HYG 146 (312)
T ss_pred HcC
Confidence 774
No 80
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=28.15 E-value=3.6e+02 Score=25.21 Aligned_cols=91 Identities=10% Similarity=0.091 Sum_probs=50.7
Q ss_pred HHHHHHHhcCCCCEEEEcCCC------hHHHHHHhcCCCEEEEecCCCCChhhhhcHHHHHHHHHhhccccCCCceEEEE
Q 019755 38 PDVIALYNQNNIRRMRLYDPN------KEALEALRGSNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQNYANNVKFKYI 111 (336)
Q Consensus 38 ~~v~~ll~~~~~~~VRlY~~d------~~vl~A~~~~gi~V~lGv~~~~~~~~~~~~~~a~~wv~~~v~~~~~~~~i~~I 111 (336)
.++++.....|+..||++..- ...++.+++.|++|...+-..+... .+.+.....++ .+..+ +.+. |
T Consensus 94 ~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~--~~~~~~~~~~~-~~~~~-Ga~~---i 166 (275)
T cd07937 94 ELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPV--HTLEYYVKLAK-ELEDM-GADS---I 166 (275)
T ss_pred HHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCC--CCHHHHHHHHH-HHHHc-CCCE---E
Confidence 445666667789999999753 2455667789999887663211111 12232322222 22332 2222 2
Q ss_pred EeccccCCCC-cchHHHHHHHHHHHHHH
Q 019755 112 AVGNEAKPGD-NFAQYLVPAMRNIQNAI 138 (336)
Q Consensus 112 ~VGNE~l~~~-~~~~~Ll~~i~~vr~aL 138 (336)
.+..-+ | -.|.++-..++.+|+.+
T Consensus 167 ~l~DT~---G~~~P~~v~~lv~~l~~~~ 191 (275)
T cd07937 167 CIKDMA---GLLTPYAAYELVKALKKEV 191 (275)
T ss_pred EEcCCC---CCCCHHHHHHHHHHHHHhC
Confidence 222111 3 26888888888888765
No 81
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.52 E-value=1.2e+02 Score=27.62 Aligned_cols=62 Identities=16% Similarity=0.355 Sum_probs=40.9
Q ss_pred EEEEcCCC-----hHHHHHHhcCCCEEEEecCCCCChhhhhcHHHHHHHHHhhccccCCCceEEEEEeccccC
Q 019755 51 RMRLYDPN-----KEALEALRGSNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQNYANNVKFKYIAVGNEAK 118 (336)
Q Consensus 51 ~VRlY~~d-----~~vl~A~~~~gi~V~lGv~~~~~~~~~~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l 118 (336)
.++|+++- .++..+....-+.++|..-.....++ +....|+ ++|..|.+ +.|.-+.|||-.=
T Consensus 62 ~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sf----eni~~W~-~~I~e~a~-~~v~~~LvGNK~D 128 (207)
T KOG0078|consen 62 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSF----ENIRNWI-KNIDEHAS-DDVVKILVGNKCD 128 (207)
T ss_pred EEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHH----HHHHHHH-HHHHhhCC-CCCcEEEeecccc
Confidence 45566653 36777766656777777665544433 3455686 68888855 3777899999863
No 82
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=26.97 E-value=5.1e+02 Score=25.22 Aligned_cols=58 Identities=16% Similarity=0.105 Sum_probs=38.2
Q ss_pred CCeeeEEecCCCCCCCCHHHHHHHHhcCCCCEEEEcCCChHHHHHHhcCCCEEEEecCC
Q 019755 20 TAQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEALEALRGSNIEVMLGLPN 78 (336)
Q Consensus 20 ~~~~Gi~Y~~~~~~~~~~~~v~~ll~~~~~~~VRlY~~d~~vl~A~~~~gi~V~lGv~~ 78 (336)
...+|||.-.+.++ +..++.++++...+.+.|=+..-++...+.+++.|++|+.-++.
T Consensus 55 dkPfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s 112 (320)
T cd04743 55 DKPWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPS 112 (320)
T ss_pred CCCeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC
Confidence 45788888655332 22345566555556777766555565578888999999987764
No 83
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=26.38 E-value=4e+02 Score=25.34 Aligned_cols=95 Identities=21% Similarity=0.254 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhCCCCCceeEeeeeecccccccCCCCCcccccccccchhHHHHHhhhcCCCceeccCCCcccCCCCCcc
Q 019755 129 PAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAIDGNRQIS 208 (336)
Q Consensus 129 ~~i~~vr~aL~~~gl~~~i~VtT~~~~~~~~~s~pPs~~~f~~~~~~~i~~~~~fl~~~~d~~~vN~yPff~~~~~~~~~ 208 (336)
.+..+++...++.|+-+ +++.... ..+.|+ .+.+.|+..+..+.+-|+.+|.=+......
T Consensus 113 ~a~~E~er~v~~~gf~g-~~l~p~~------~~~~~~--------~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~----- 172 (293)
T COG2159 113 AAAEELERRVRELGFVG-VKLHPVA------QGFYPD--------DPRLYPIYEAAEELGVPVVIHTGAGPGGAG----- 172 (293)
T ss_pred HHHHHHHHHHHhcCceE-EEecccc------cCCCCC--------ChHHHHHHHHHHHcCCCEEEEeCCCCCCcc-----
Confidence 35566666666677654 5554321 111111 244678899999999999986544333221
Q ss_pred ccccccccCCCccCCCCCcchhHHHHHHHHHHHHHHHhCCCCCcEEEeeec--cCCCCC
Q 019755 209 LDYALFRSQQPVVSDPPLSYRNLFDAQLDATYAALEKAGGGSLDIVISESG--WPTAGG 265 (336)
Q Consensus 209 ~~~a~f~~~~~~~~d~~~~y~n~fda~~d~~~~al~~~g~~~~~vvVtEtG--WPS~G~ 265 (336)
++... .+. -. ++-+ .. -+|+.+||+++.| +|....
T Consensus 173 ~~~~~--------~~p-----~~----~~~v---a~--~fP~l~IVl~H~G~~~p~~~~ 209 (293)
T COG2159 173 LEKGH--------SDP-----LY----LDDV---AR--KFPELKIVLGHMGEDYPWELE 209 (293)
T ss_pred cccCC--------CCc-----hH----HHHH---HH--HCCCCcEEEEecCCCCchhHH
Confidence 00000 000 11 2222 22 3799999999999 887553
No 84
>PRK03941 NTPase; Reviewed
Probab=25.61 E-value=4.3e+02 Score=23.38 Aligned_cols=61 Identities=16% Similarity=0.144 Sum_probs=39.9
Q ss_pred CEEEEecCCCCChhhhhcHHHHHHHHHhhccccCCCceEEEEEeccccCCCCcchHHHHHHHHHHHHHHHh
Q 019755 70 IEVMLGLPNDKLQPIASNQAEANTWVQNNVQNYANNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAING 140 (336)
Q Consensus 70 i~V~lGv~~~~~~~~~~~~~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~~~~~~~Ll~~i~~vr~aL~~ 140 (336)
|+|.+|--|. ..+++ +++++..++|...|.++.|-+.+=...-..+.+..|++.+|.+++.
T Consensus 1 m~V~VGS~NP------vKi~A----v~~af~~~~~~~~v~~v~v~SgV~~QP~geET~~GA~nRA~~A~~~ 61 (174)
T PRK03941 1 MKVAVGSTNP------VKVEA----VENVFGKIFDDVEVVGVEVDSGVPDQPFGEETVKGAINRAKNAYSP 61 (174)
T ss_pred CEEEEeCCCH------HHHHH----HHHHHHHhCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 5677776552 11222 3444555556666888888777743221378999999999999985
No 85
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=25.61 E-value=1.4e+02 Score=30.30 Aligned_cols=95 Identities=15% Similarity=0.256 Sum_probs=52.1
Q ss_pred HHHHHHHhcCCCCEEEEc--CCC-------------hH---HHHHHhcCCC-----EEEEecCCCCChhhhhcHHHHHHH
Q 019755 38 PDVIALYNQNNIRRMRLY--DPN-------------KE---ALEALRGSNI-----EVMLGLPNDKLQPIASNQAEANTW 94 (336)
Q Consensus 38 ~~v~~ll~~~~~~~VRlY--~~d-------------~~---vl~A~~~~gi-----~V~lGv~~~~~~~~~~~~~~a~~w 94 (336)
++.+++|+..|+++|-+= +.+ .. .++.+++.|+ .+|.|++.+...++....+.+.+
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~- 230 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKVIA- 230 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHh-
Confidence 567778887787766432 111 12 3344455554 46888887666555554443321
Q ss_pred HHhhccccCCCceEEEEE-------------eccccCCCCcchHHHHHHHHHHHHHHHhCCCC
Q 019755 95 VQNNVQNYANNVKFKYIA-------------VGNEAKPGDNFAQYLVPAMRNIQNAINGANLG 144 (336)
Q Consensus 95 v~~~v~~~~~~~~i~~I~-------------VGNE~l~~~~~~~~Ll~~i~~vr~aL~~~gl~ 144 (336)
..| +.|..-. +|.+.+. ..++.+..++.+...|.++|+.
T Consensus 231 -------l~p-~~i~~y~l~~~p~~~~~~~~~~~~~lp---~~~~~~~~~~~~~~~L~~~Gy~ 282 (453)
T PRK13347 231 -------LSP-DRIAVFGYAHVPSRRKNQRLIDEAALP---DAEERLRQARAVADRLLAAGYV 282 (453)
T ss_pred -------cCC-CEEEEeccccccchhhHHhcCCccCCc---CHHHHHHHHHHHHHHHHHCCCE
Confidence 111 2222111 1111111 3567778888899999999984
No 86
>PLN00196 alpha-amylase; Provisional
Probab=25.54 E-value=2.7e+02 Score=28.15 Aligned_cols=56 Identities=21% Similarity=0.284 Sum_probs=35.2
Q ss_pred eeeEEecCCCCCCCCHH---HHHHHHhcCCCCEE-----------------EEcCCC----------hHHHHHHhcCCCE
Q 019755 22 QIGVCYGMLGDNLPSKP---DVIALYNQNNIRRM-----------------RLYDPN----------KEALEALRGSNIE 71 (336)
Q Consensus 22 ~~Gi~Y~~~~~~~~~~~---~v~~ll~~~~~~~V-----------------RlY~~d----------~~vl~A~~~~gi~ 71 (336)
..|+.+.....++..-. +-+.-|+..||+.| +.|+.+ .+++++|.+.||+
T Consensus 28 ~Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIk 107 (428)
T PLN00196 28 FQGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQ 107 (428)
T ss_pred EEeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCE
Confidence 58999876544332212 22345666777766 344433 3577888899999
Q ss_pred EEEecC
Q 019755 72 VMLGLP 77 (336)
Q Consensus 72 V~lGv~ 77 (336)
|++=+=
T Consensus 108 VilDvV 113 (428)
T PLN00196 108 VIADIV 113 (428)
T ss_pred EEEEEC
Confidence 999653
No 87
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=25.26 E-value=3.7e+02 Score=26.09 Aligned_cols=28 Identities=14% Similarity=0.045 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCCCCCCceEEEEEE
Q 019755 271 NVDNARTYNNNLIQHVKQGSPKKPGRPIETYIFAM 305 (336)
Q Consensus 271 s~~na~~y~~~~~~~~~~gtp~~p~~~~~~~~F~~ 305 (336)
+-++++.+++++.+.+. ..+++.+|..+
T Consensus 104 tnp~ar~wW~~~~~~l~-------~~Gv~~~W~Dm 131 (332)
T cd06601 104 GRPDVREWWGNQYKYLF-------DIGLEFVWQDM 131 (332)
T ss_pred CCHHHHHHHHHHHHHHH-------hCCCceeecCC
Confidence 33467778888877654 13677777663
No 88
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.10 E-value=2.7e+02 Score=27.98 Aligned_cols=61 Identities=15% Similarity=0.231 Sum_probs=34.5
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCCceeEeeeeecccccccCCCCCcccccccccchhHHHHHhhhcCCCceeccCCCcc
Q 019755 121 DNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFA 200 (336)
Q Consensus 121 ~~~~~~Ll~~i~~vr~aL~~~gl~~~i~VtT~~~~~~~~~s~pPs~~~f~~~~~~~i~~~~~fl~~~~d~~~vN~yPff~ 200 (336)
+.+.++...+++.+|+.+. .+.++|..-. .+| | +-...+...++|+.+. .+-.+++++|-.
T Consensus 278 ~~~~~~~~~~i~~lr~~~~------~i~i~~d~Iv-----G~P---g----ET~ed~~~tl~~i~~l-~~~~~~~~~~sp 338 (439)
T PRK14328 278 HYTREYYLELVEKIKSNIP------DVAITTDIIV-----GFP---G----ETEEDFEETLDLVKEV-RYDSAFTFIYSK 338 (439)
T ss_pred CCCHHHHHHHHHHHHHhCC------CCEEEEEEEE-----ECC---C----CCHHHHHHHHHHHHhc-CCCcccceEecC
Confidence 3467888888888887632 2555553321 233 1 1123456778887543 345567777643
No 89
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=23.52 E-value=1.4e+02 Score=26.90 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=35.2
Q ss_pred HHHHhcCCCCEEEEcCCChHHHHHHhcCCCEEEEecCCCC
Q 019755 41 IALYNQNNIRRMRLYDPNKEALEALRGSNIEVMLGLPNDK 80 (336)
Q Consensus 41 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~gi~V~lGv~~~~ 80 (336)
.++|+-.|+++||+-+.+|.=..++.+.||+|.--+++..
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~~ 172 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLIV 172 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecCC
Confidence 4789999999999999998888889999999998887653
No 90
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=23.34 E-value=77 Score=31.48 Aligned_cols=38 Identities=24% Similarity=0.263 Sum_probs=23.4
Q ss_pred HHHHhCCCCCcEEEeeeccCCCCCCCCCCCHHHHHHHHHHH
Q 019755 242 ALEKAGGGSLDIVISESGWPTAGGDGALTNVDNARTYNNNL 282 (336)
Q Consensus 242 al~~~g~~~~~vvVtEtGWPS~G~~~a~as~~na~~y~~~~ 282 (336)
+++.+..+|+.|+|-| |..|+.-+..-++.++..++.+
T Consensus 188 ~l~~A~~~~~gI~IMe---P~~gG~l~~~vP~~~~~l~~~~ 225 (391)
T COG1453 188 GLKYAASKGLGIFIME---PLDGGGLLYNVPEKLEELCRPA 225 (391)
T ss_pred HHHHHHhCCCcEEEEe---eCCCCCcccCCCHHHHHHHHhc
Confidence 3444445788999988 9999853333334555544443
No 91
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=23.30 E-value=6.4e+02 Score=25.13 Aligned_cols=61 Identities=8% Similarity=0.108 Sum_probs=35.9
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCCceeEeeeeecccccccCCCCCcccccccccchhHHHHHhhhcCCCceeccCCCccc
Q 019755 122 NFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAI 201 (336)
Q Consensus 122 ~~~~~Ll~~i~~vr~aL~~~gl~~~i~VtT~~~~~~~~~s~pPs~~~f~~~~~~~i~~~~~fl~~~~d~~~vN~yPff~~ 201 (336)
...++..++++.+|+... .+.|++..-. .+| .+-...+...++|+.+ ..+-.+|+++|-..
T Consensus 267 ~~~~~~~~~i~~l~~~~~------~i~i~~~~I~-----G~P-------gET~e~~~~t~~fl~~-~~~~~~~~~~~sp~ 327 (430)
T TIGR01125 267 GSGEQQLDFIERLREKCP------DAVLRTTFIV-----GFP-------GETEEDFQELLDFVEE-GQFDRLGAFTYSPE 327 (430)
T ss_pred CCHHHHHHHHHHHHHhCC------CCeEeEEEEE-----ECC-------CCCHHHHHHHHHHHHh-cCCCEEeeeeccCC
Confidence 366788888888887631 2555554311 222 1112356688888865 44556777877554
No 92
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=22.95 E-value=3e+02 Score=22.31 Aligned_cols=91 Identities=14% Similarity=0.110 Sum_probs=47.7
Q ss_pred HHHhcCCCCEEEEcCCC----------hHHHHHHhcCCCEEEEecCCCCChhhhhcHHHHHHHHHhhccccCCCceEEEE
Q 019755 42 ALYNQNNIRRMRLYDPN----------KEALEALRGSNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQNYANNVKFKYI 111 (336)
Q Consensus 42 ~ll~~~~~~~VRlY~~d----------~~vl~A~~~~gi~V~lGv~~~~~~~~~~~~~~a~~wv~~~v~~~~~~~~i~~I 111 (336)
+-|.++|.++|-+-+.. .....+++++|+....-............ .....|+++. .| ++|
T Consensus 2 ~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~----~p----dai 72 (160)
T PF13377_consen 2 DYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSEDAR-EAQLLWLRRL----RP----DAI 72 (160)
T ss_dssp HHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHHHH-HHHHHHHHTC----SS----SEE
T ss_pred hHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchhHH-HHHHHHHhcC----CC----cEE
Confidence 34555678888887733 23556778899876554443322221111 1222355333 12 378
Q ss_pred EeccccCCCCcchHHHHHHHHHHHHHHHhCCC--CCceeEeeee
Q 019755 112 AVGNEAKPGDNFAQYLVPAMRNIQNAINGANL--GSQIKVSTAI 153 (336)
Q Consensus 112 ~VGNE~l~~~~~~~~Ll~~i~~vr~aL~~~gl--~~~i~VtT~~ 153 (336)
.++|+.+. ..+..+|.+.|+ .+++.|-+-+
T Consensus 73 i~~~~~~a------------~~~~~~l~~~g~~vP~di~vv~~~ 104 (160)
T PF13377_consen 73 ICSNDRLA------------LGVLRALRELGIRVPQDISVVSFD 104 (160)
T ss_dssp EESSHHHH------------HHHHHHHHHTTSCTTTTSEEEEES
T ss_pred EEcCHHHH------------HHHHHHHHHcCCcccccccEEEec
Confidence 88877642 223345555665 3556666644
No 93
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=22.87 E-value=5.6e+02 Score=22.96 Aligned_cols=92 Identities=15% Similarity=0.323 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCCCCEEEEc-C-CC--hHHHHHHhcCCCEEEEecCCCCChhhhhcHHHHHHHHHhhccccCCC-ceEEEE
Q 019755 37 KPDVIALYNQNNIRRMRLY-D-PN--KEALEALRGSNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQNYANN-VKFKYI 111 (336)
Q Consensus 37 ~~~v~~ll~~~~~~~VRlY-~-~d--~~vl~A~~~~gi~V~lGv~~~~~~~~~~~~~~a~~wv~~~v~~~~~~-~~i~~I 111 (336)
|.+.++.+...|...|=+- . +. ..+++.+++.|+++-+.++... .+ +.+.+|.+. +.|.-.
T Consensus 69 P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T--~~------------~~~~~~l~~vD~VlvM 134 (201)
T PF00834_consen 69 PERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPET--PV------------EELEPYLDQVDMVLVM 134 (201)
T ss_dssp GGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS---G------------GGGTTTGCCSSEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCC--Cc------------hHHHHHhhhcCEEEEE
Confidence 3556666666566655332 1 12 3688889999999988887532 11 123333332 444444
Q ss_pred EeccccCCCCc-chHHHHHHHHHHHHHHHhCCCC
Q 019755 112 AVGNEAKPGDN-FAQYLVPAMRNIQNAINGANLG 144 (336)
Q Consensus 112 ~VGNE~l~~~~-~~~~Ll~~i~~vr~aL~~~gl~ 144 (336)
+| |+=+.|+ .-+..++.|+.+|+.+.+.|+.
T Consensus 135 sV--~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~ 166 (201)
T PF00834_consen 135 SV--EPGFGGQKFIPEVLEKIRELRKLIPENGLD 166 (201)
T ss_dssp SS---TTTSSB--HGGHHHHHHHHHHHHHHHTCG
T ss_pred Ee--cCCCCcccccHHHHHHHHHHHHHHHhcCCc
Confidence 43 4434454 6788999999999999998864
No 94
>KOG2775 consensus Metallopeptidase [General function prediction only]
Probab=22.67 E-value=1.5e+02 Score=28.71 Aligned_cols=107 Identities=19% Similarity=0.306 Sum_probs=58.0
Q ss_pred chHHHHHHHHHH-HHHHHhCCCCCceeEeeeeecccccccCCCCCcccccccccchhHHHHHhhhcCCCceeccCCCccc
Q 019755 123 FAQYLVPAMRNI-QNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAI 201 (336)
Q Consensus 123 ~~~~Ll~~i~~v-r~aL~~~gl~~~i~VtT~~~~~~~~~s~pPs~~~f~~~~~~~i~~~~~fl~~~~d~~~vN~yPff~~ 201 (336)
+.=++.+.|.+. |..+...|+..-|-.-|-.+++.-+..|+|.+|.=. +.+..|.+-+.. .-
T Consensus 111 tm~ei~e~iEnttR~li~e~gl~aGi~FPtG~SlN~cAAHyTpNaGd~t-------------VLqydDV~KiDf----Gt 173 (397)
T KOG2775|consen 111 TMIEICETIENTTRKLILENGLNAGIGFPTGCSLNHCAAHYTPNAGDKT-------------VLKYDDVMKIDF----GT 173 (397)
T ss_pred cHHHHHHHHHHHHHHHHHhccccccccCCCcccccchhhhcCCCCCCce-------------eeeecceEEEec----cc
Confidence 334555555544 445555666555656666667666667888888621 113344444431 11
Q ss_pred CCC-CCccccc-cccccCCCccCCCCCcchhHHHHHHHHHHHHHHHhCCCCCcEEEeeec
Q 019755 202 DGN-RQISLDY-ALFRSQQPVVSDPPLSYRNLFDAQLDATYAALEKAGGGSLDIVISESG 259 (336)
Q Consensus 202 ~~~-~~~~~~~-a~f~~~~~~~~d~~~~y~n~fda~~d~~~~al~~~g~~~~~vvVtEtG 259 (336)
+.+ +-|+..| ..|++ .|.+++.|.-++.+..++.+| +.|.+.+.|
T Consensus 174 hi~GrIiDsAFTv~F~p----------~~d~Ll~AvreaT~tGIkeaG---iDvRlcdiG 220 (397)
T KOG2775|consen 174 HIDGRIIDSAFTVAFNP----------KYDPLLAAVREATNTGIKEAG---IDVRLCDIG 220 (397)
T ss_pred cccCeEeeeeeEEeeCc----------cccHHHHHHHHHHhhhhhhcC---ceeeehhhh
Confidence 112 2233322 12322 477888888888877776654 466666555
No 95
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=22.24 E-value=7.8e+02 Score=24.74 Aligned_cols=74 Identities=9% Similarity=0.072 Sum_probs=42.8
Q ss_pred EEEEEeccccCC--------CCcchHHHHHHHHHHHHHHHhCCCCCceeEeeeeecccccccCCCCCcccccccccchhH
Q 019755 108 FKYIAVGNEAKP--------GDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDP 179 (336)
Q Consensus 108 i~~I~VGNE~l~--------~~~~~~~Ll~~i~~vr~aL~~~gl~~~i~VtT~~~~~~~~~s~pPs~~~f~~~~~~~i~~ 179 (336)
...|.+|=|-.. ++.+.++...+++.+|+... .+.++|..- .++| | +-...+..
T Consensus 259 ~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~~------~i~i~~d~I-----vG~P---g----ET~ed~~~ 320 (446)
T PRK14337 259 CPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAARP------DIALTTDLI-----VGFP---G----ETEEDFEQ 320 (446)
T ss_pred cCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhCC------CCeEEEeEE-----EECC---C----CCHHHHHH
Confidence 456777765443 23367888888888887631 256665432 2233 1 11234567
Q ss_pred HHHHhhhcCCCceeccCCCcc
Q 019755 180 VITFLNENKSPLLVNLYPYFA 200 (336)
Q Consensus 180 ~~~fl~~~~d~~~vN~yPff~ 200 (336)
.++|+.+ ..+-.+|+++|-.
T Consensus 321 tl~~l~~-~~~~~~~~f~ysp 340 (446)
T PRK14337 321 TLEAMRT-VGFASSFSFCYSD 340 (446)
T ss_pred HHHHHHh-cCCCeeEEEecCC
Confidence 7888755 3456677777643
No 96
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=22.21 E-value=6.1e+02 Score=23.59 Aligned_cols=87 Identities=8% Similarity=0.075 Sum_probs=47.9
Q ss_pred HHHHHhcCCCCEEEEcCCC------hHHHHHHhcCCCEEEEecCCCCChhhhhcHHHHHHHHHhhccccCCCceEEEEEe
Q 019755 40 VIALYNQNNIRRMRLYDPN------KEALEALRGSNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQNYANNVKFKYIAV 113 (336)
Q Consensus 40 v~~ll~~~~~~~VRlY~~d------~~vl~A~~~~gi~V~lGv~~~~~~~~~~~~~~a~~wv~~~v~~~~~~~~i~~I~V 113 (336)
.++.....+++.||++... ...++.+++.|++|.+++..... .+.+.....++. +..+ +.+. |.+
T Consensus 87 ~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~----~~~~~~~~~~~~-~~~~-g~~~---i~l 157 (266)
T cd07944 87 LLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISG----YSDEELLELLEL-VNEI-KPDV---FYI 157 (266)
T ss_pred HHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeecC----CCHHHHHHHHHH-HHhC-CCCE---EEE
Confidence 3444455678889998643 24555567789988888765322 233333333332 2333 2222 222
Q ss_pred ccccCCCC-cchHHHHHHHHHHHHHH
Q 019755 114 GNEAKPGD-NFAQYLVPAMRNIQNAI 138 (336)
Q Consensus 114 GNE~l~~~-~~~~~Ll~~i~~vr~aL 138 (336)
..-. | -.|.++-..++.+|+.+
T Consensus 158 ~DT~---G~~~P~~v~~lv~~l~~~~ 180 (266)
T cd07944 158 VDSF---GSMYPEDIKRIISLLRSNL 180 (266)
T ss_pred ecCC---CCCCHHHHHHHHHHHHHhc
Confidence 2111 2 26788888888888765
No 97
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=22.08 E-value=3.1e+02 Score=21.82 Aligned_cols=52 Identities=23% Similarity=0.271 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhhhc--cCCCeeeEEecCCCCCCCCHHHHHHHHhcCCCCEEEE
Q 019755 3 SVVLLLLGLLVATLD--TTTAQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRL 54 (336)
Q Consensus 3 ~~~~~~~~~~~~~~~--~~~~~~Gi~Y~~~~~~~~~~~~v~~ll~~~~~~~VRl 54 (336)
+.+.|+++++.+.+- .....+-|+-..-+...+...++.+.|++.|+..-++
T Consensus 12 il~vl~~~~lyALPnlyge~pAvqIs~~~~~~~~~~~~~v~~~L~~~~I~~k~i 65 (101)
T PF13721_consen 12 ILVVLLLGALYALPNLYGEDPAVQISASSAGVQLPDAFQVEQALKAAGIAVKSI 65 (101)
T ss_pred HHHHHHHHHHHHhhhccCCCCcEEEecCCCCccCChHHHHHHHHHHCCCCcceE
Confidence 444566666666651 2334455666555555666677888998888765443
No 98
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=22.06 E-value=6.6e+02 Score=24.97 Aligned_cols=102 Identities=17% Similarity=0.134 Sum_probs=59.7
Q ss_pred HHHHHHHhcCCCCEEEEcCC----------C------------hHHHHHHhcCCCEEEEecCCCC------Chh-----h
Q 019755 38 PDVIALYNQNNIRRMRLYDP----------N------------KEALEALRGSNIEVMLGLPNDK------LQP-----I 84 (336)
Q Consensus 38 ~~v~~ll~~~~~~~VRlY~~----------d------------~~vl~A~~~~gi~V~lGv~~~~------~~~-----~ 84 (336)
+++...+++.|++.||+.-+ + .++++.+.+.||.|++-+-... ..+ +
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 45667888999999999743 2 1456777889999998743221 111 1
Q ss_pred hh---c-HHHHHHHHHhhc-cccCCCceEEEEEeccccCC--CCcchHHH-HHHHHHHHHHHHhC
Q 019755 85 AS---N-QAEANTWVQNNV-QNYANNVKFKYIAVGNEAKP--GDNFAQYL-VPAMRNIQNAINGA 141 (336)
Q Consensus 85 ~~---~-~~~a~~wv~~~v-~~~~~~~~i~~I~VGNE~l~--~~~~~~~L-l~~i~~vr~aL~~~ 141 (336)
.. . ......| ..| .+|.+...|.++-+=||+.. -.+....- -++...||+.+.+.
T Consensus 156 ~~~~~~~~~~~~~w--~~ia~~f~~~~~VIg~~~~NEP~~~~~~~~w~~~~~~A~~~v~~~i~~~ 218 (407)
T COG2730 156 KEENENVEATIDIW--KFIANRFKNYDTVIGFELINEPNGIVTSETWNGGDDEAYDVVRNAILSN 218 (407)
T ss_pred cccchhHHHHHHHH--HHHHHhccCCCceeeeeeecCCcccCCccccccchHHHHHHHHhhhhhc
Confidence 11 0 1122222 233 34445577888899999983 12223333 47777776665544
No 99
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=20.74 E-value=5.3e+02 Score=28.46 Aligned_cols=110 Identities=15% Similarity=0.043 Sum_probs=63.0
Q ss_pred eeeEEecCCCCCC-C--CH---HHHHHHHhcCCCCEEEEcCC--ChHHHHHHhcCCCEEEEecCCC-----CChhhhhcH
Q 019755 22 QIGVCYGMLGDNL-P--SK---PDVIALYNQNNIRRMRLYDP--NKEALEALRGSNIEVMLGLPND-----KLQPIASNQ 88 (336)
Q Consensus 22 ~~Gi~Y~~~~~~~-~--~~---~~v~~ll~~~~~~~VRlY~~--d~~vl~A~~~~gi~V~lGv~~~-----~~~~~~~~~ 88 (336)
..|+|.-+...-. . .. .+.++++|..|++.||+-.- ++.-++-|-..||-|+-=.... +.+.+.+
T Consensus 302 ~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRtsHyP~~~~~ydLcDelGllV~~Ea~~~~~~~~~~~~~~k-- 379 (808)
T COG3250 302 IRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTSHYPNSEEFYDLCDELGLLVIDEAMIETHGMPDDPEWRK-- 379 (808)
T ss_pred EeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhCcEEEEecchhhcCCCCCcchhH--
Confidence 4677777654321 1 12 34568899999999999753 4778888888998887644332 1122221
Q ss_pred HHHHHHHHhhccccCCCceEEEEEeccccCCCCcchHHHHHHHHHHH
Q 019755 89 AEANTWVQNNVQNYANNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQ 135 (336)
Q Consensus 89 ~~a~~wv~~~v~~~~~~~~i~~I~VGNE~l~~~~~~~~Ll~~i~~vr 135 (336)
.+..-+...|.+....-.|.-=++|||.-. +.....+...++.++
T Consensus 380 -~~~~~i~~mver~knHPSIiiWs~gNE~~~-g~~~~~~~~~~k~~d 424 (808)
T COG3250 380 -EVSEEVRRMVERDRNHPSIIIWSLGNESGH-GSNHWALYRWFKASD 424 (808)
T ss_pred -HHHHHHHHHHHhccCCCcEEEEeccccccC-ccccHHHHHHHhhcC
Confidence 222224455544322224666899999854 223344444444433
No 100
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.61 E-value=4.8e+02 Score=26.12 Aligned_cols=75 Identities=12% Similarity=0.095 Sum_probs=42.2
Q ss_pred EEEEEeccccCC--------CCcchHHHHHHHHHHHHHHHhCCCCCceeEeeeeecccccccCCCCCcccccccccchhH
Q 019755 108 FKYIAVGNEAKP--------GDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDP 179 (336)
Q Consensus 108 i~~I~VGNE~l~--------~~~~~~~Ll~~i~~vr~aL~~~gl~~~i~VtT~~~~~~~~~s~pPs~~~f~~~~~~~i~~ 179 (336)
...+.+|=|-.. ++...++..++++.+|+.+ . .+.|+|..-. ++| .+-...+..
T Consensus 250 ~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~-----~-~i~i~~d~Iv-----GfP-------gET~edf~~ 311 (434)
T PRK14330 250 AKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKV-----P-DASISSDIIV-----GFP-------TETEEDFME 311 (434)
T ss_pred cCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC-----C-CCEEEEEEEE-----ECC-------CCCHHHHHH
Confidence 456777766543 2236778888888888763 1 2667665322 233 111234567
Q ss_pred HHHHhhhcCCCceeccCCCccc
Q 019755 180 VITFLNENKSPLLVNLYPYFAI 201 (336)
Q Consensus 180 ~~~fl~~~~d~~~vN~yPff~~ 201 (336)
.++|+.+. .+-.+|+++|-..
T Consensus 312 tl~fi~~~-~~~~~~~~~~sp~ 332 (434)
T PRK14330 312 TVDLVEKA-QFERLNLAIYSPR 332 (434)
T ss_pred HHHHHHhc-CCCEEeeeeccCC
Confidence 78887653 3445666666443
No 101
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=20.60 E-value=3.4e+02 Score=25.92 Aligned_cols=70 Identities=10% Similarity=0.029 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCceeEeeeeecccccccCC--CCCcccccccccchhHHHHHhhhcCCCceeccCCCccc
Q 019755 124 AQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSP--PSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAI 201 (336)
Q Consensus 124 ~~~Ll~~i~~vr~aL~~~gl~~~i~VtT~~~~~~~~~s~p--Ps~~~f~~~~~~~i~~~~~fl~~~~d~~~vN~yPff~~ 201 (336)
.++|.+.++++|+. +||+.+-.--.-|...+. -+.-.|.++.-|-.+.+++-|.+.+=-+++.++|+...
T Consensus 28 q~~v~~~~~~~r~~--------~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~ 99 (317)
T cd06599 28 QEALLEFIDKCREH--------DIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQ 99 (317)
T ss_pred HHHHHHHHHHHHHc--------CCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccC
Confidence 56777777777764 478876532111211100 00112333333556789999999999999999999764
No 102
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=20.01 E-value=2.2e+02 Score=26.91 Aligned_cols=31 Identities=13% Similarity=0.157 Sum_probs=19.4
Q ss_pred EEEEeccccCCC---C---cchHHHHHHHHHHHHHHH
Q 019755 109 KYIAVGNEAKPG---D---NFAQYLVPAMRNIQNAIN 139 (336)
Q Consensus 109 ~~I~VGNE~l~~---~---~~~~~Ll~~i~~vr~aL~ 139 (336)
.+|+||+..+.. + ...+.+...+++++.+++
T Consensus 228 DGVIVGSAiV~~i~~~~~~~~~~~~~~l~~~l~~~~~ 264 (265)
T COG0159 228 DGVIVGSAIVKIIEEGLDEEALEELRALVKELKAALR 264 (265)
T ss_pred CeEEEcHHHHHHHHhccchhhHHHHHHHHHHHHHHhc
Confidence 489999987742 1 134566666666666553
Done!