Query 019756
Match_columns 336
No_of_seqs 361 out of 1387
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 06:38:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019756.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019756hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 6.6E-31 2.3E-35 250.1 25.2 278 16-334 197-484 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.7 3.6E-18 1.2E-22 160.0 7.9 253 4-312 170-433 (451)
3 4aps_A DI-OR tripeptide H+ sym 99.6 4.1E-15 1.4E-19 141.0 18.3 152 137-319 322-478 (491)
4 2cfq_A Lactose permease; trans 99.6 7.3E-17 2.5E-21 150.4 4.7 142 139-320 264-407 (417)
5 3o7q_A L-fucose-proton symport 99.6 8.8E-15 3E-19 136.4 17.2 171 88-305 248-425 (438)
6 1pw4_A Glycerol-3-phosphate tr 99.5 1.2E-13 4.2E-18 129.0 10.5 173 109-318 35-212 (451)
7 3o7q_A L-fucose-proton symport 99.5 6.6E-13 2.3E-17 123.6 14.7 165 117-318 41-236 (438)
8 2gfp_A EMRD, multidrug resista 99.4 3.6E-13 1.2E-17 123.1 11.1 163 117-319 15-181 (375)
9 2gfp_A EMRD, multidrug resista 99.4 1.8E-13 6.2E-18 125.1 3.0 209 4-290 139-353 (375)
10 4aps_A DI-OR tripeptide H+ sym 99.3 2.5E-12 8.5E-17 121.8 10.3 141 132-312 49-196 (491)
11 2xut_A Proton/peptide symporte 99.3 4E-11 1.4E-15 114.4 14.0 152 121-311 31-197 (524)
12 4gc0_A D-xylose-proton symport 99.3 8.4E-11 2.9E-15 111.1 15.3 123 138-288 59-187 (491)
13 2xut_A Proton/peptide symporte 99.1 2.8E-11 9.5E-16 115.6 2.9 82 243-324 421-514 (524)
14 2cfq_A Lactose permease; trans 98.7 5.5E-09 1.9E-13 96.9 2.7 161 120-316 25-191 (417)
15 2g9p_A Antimicrobial peptide l 33.8 15 0.00052 18.0 0.9 14 153-166 2-15 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.98 E-value=6.6e-31 Score=250.05 Aligned_cols=278 Identities=31% Similarity=0.563 Sum_probs=207.5
Q ss_pred cchHHHHHHhHHHHHHHHHHHhcCCCChHHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhchhhHHHHHHh
Q 019756 16 IPWRILALIGVIPCVLQLIGLFFIPESPRWLVKIGKEKEFETTLQNLRGKGADISQEAAEIRDHIEISQKHSEARLLNLF 95 (336)
Q Consensus 16 ~gWr~~f~i~~i~~~i~~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (336)
.+||+++.+..+++++.++.++++||||||+..+++.|++++.+++..+++...++. .+.++..+++++ .......
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~- 272 (491)
T 4gc0_A 197 DGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAV-QEIKHSLDHGRK--TGGRLLM- 272 (491)
T ss_dssp THHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HTTHHHH-
T ss_pred hhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHH-HHHHHHHHhhhh--hhhHHHH-
Confidence 479999999999999999999999999999999999999999998886543222111 111111111111 1111111
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHhCCCch---hHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeecc
Q 019756 96 QRRYANSLIIGVGLMLLQQFGGASAMAYYTSSIFEKAGASGS---IGSRGIAIIQIPAVITSVLLMDKAGRKPLLMVITT 172 (336)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~g~~~~~~l~dr~grr~~l~~~~~ 172 (336)
...++..+......+.++.+.+.+.+|.+.+.+..+.+.. ......++..+++.++++++.||+|||+.++.
T Consensus 273 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~--- 347 (491)
T 4gc0_A 273 --FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQII--- 347 (491)
T ss_dssp --SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHH---
T ss_pred --hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhcc---
Confidence 2233445555566777777888999999999998877654 45667778889999999999999999999888
Q ss_pred cccccccccccccccccccchhhhhhhhhhHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHhhcCccchhhhhh
Q 019756 173 SRTLFKMFDFVDQRGYENGYQYLQISACGMAFGCFLIGLSFYLKEVKNMNDAAHILVLVGFMGCSAFNSIGLAGIPFVIM 252 (336)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (336)
+...+.++++.++...... ...+..++....+..++..+..++.+.+.
T Consensus 348 -------------------------~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (491)
T 4gc0_A 348 -------------------------GALGMAIGMFSLGTAFYTQ-------APGIVALLSMLFYVAAFAMSWGPVCWVLL 395 (491)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHTT-------CCHHHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred -------------------------chHHHHHHHHHHHHHHhcc-------cchHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 7777777777666543322 22344455555666677778888999999
Q ss_pred cccCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-------hhcchhhhHHHHHHHHHHHHHHhhccCCCCCCHHHHH
Q 019756 253 SEIFPINVKASAGSLVILICWSCSWIVTYTFNFMMQ-------WSSAGTFFIFSGIGFFTVLFVAKIVPETKGRTLEEIQ 325 (336)
Q Consensus 253 ~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~i~~~~~~~et~~~~~~~~~ 325 (336)
+|++|++.|++++|+.+..+++++++++.+.+.+.+ .+...++++++++++++.++.++++||||++++||+|
T Consensus 396 ~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~ 475 (491)
T 4gc0_A 396 SEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELE 475 (491)
T ss_dssp HHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHG
T ss_pred HHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHH
Confidence 999999999999999999999999999988876643 3455678899999999999999999999999999999
Q ss_pred HHHcccCCC
Q 019756 326 DSIITSFAG 334 (336)
Q Consensus 326 ~~~~~~~~~ 334 (336)
+.++++...
T Consensus 476 ~~f~~~~~~ 484 (491)
T 4gc0_A 476 ALWEPETKK 484 (491)
T ss_dssp GGTC-----
T ss_pred HHhCCCCcc
Confidence 988876543
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.73 E-value=3.6e-18 Score=159.95 Aligned_cols=253 Identities=10% Similarity=0.105 Sum_probs=152.4
Q ss_pred hhhHHHHHhhCccc-hHHHHHHhHHHHHHH-HHHHhcCCCChHHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Q 019756 4 FGCSLAYFFGNVIP-WRILALIGVIPCVLQ-LIGLFFIPESPRWLVKIGKEKEFETTLQNLRGKGADISQEAAEIRDHIE 81 (336)
Q Consensus 4 ~G~~l~~~l~~~~g-Wr~~f~i~~i~~~i~-~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (336)
+|+.++..+....| ||+.|++.++.+++. ++.++++||+|+....+++.++ ..+.+++. +++.+
T Consensus 170 ~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~---~~~~~ 235 (451)
T 1pw4_A 170 IPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------KNDYPDDY---NEKAE 235 (451)
T ss_dssp SHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------CCC-------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh-----------cccccccc---hhhhh
Confidence 45666665556678 999999988776655 4556778998864211111100 00000000 00001
Q ss_pred HhhchhhHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH-hCCCch---hHHHHHHHHHHHHHHHHHHh
Q 019756 82 ISQKHSEARLLNLFQRRYANSLIIGVGLMLLQQFGGASAMAYYTSSIFEK-AGASGS---IGSRGIAIIQIPAVITSVLL 157 (336)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~---~~~~~~~~~~~~g~~~~~~l 157 (336)
++...++...++.++++..+...+..++. .........+.|.++++ .|.+.. .......++.+++.++.+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 311 (451)
T 1pw4_A 236 QELTAKQIFMQYVLPNKLLWYIAIANVFV----YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM 311 (451)
T ss_dssp ---CCTHHHHHHTSSCHHHHHHHHHHHHH----HHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHcCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111122234555555544443333222 22345566777777776 677765 56667778899999999999
Q ss_pred hhhc--CCceeeeeecccccccccccccccccccccchhhhhhhhhhH-HHHHHHHHHHhhhccccccchhHHHHHHHHH
Q 019756 158 MDKA--GRKPLLMVITTSRTLFKMFDFVDQRGYENGYQYLQISACGMA-FGCFLIGLSFYLKEVKNMNDAAHILVLVGFM 234 (336)
Q Consensus 158 ~dr~--grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (336)
.||+ |||+.+.. +..+.. +++.++... ++ ...+...+...
T Consensus 312 ~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~---~~------~~~~~~~~~~~ 354 (451)
T 1pw4_A 312 SDKVFRGNRGATGV----------------------------FFMTLVTIATIVYWMN---PA------GNPTVDMICMI 354 (451)
T ss_dssp HHHTSTTCHHHHHH----------------------------HHHHHHHHHHHHTTSC---CT------TCHHHHHHHHH
T ss_pred HHHHhcCCchhHHH----------------------------HHHHHHHHHHHHHHHh---cc------cCHHHHHHHHH
Confidence 9999 99987766 444433 333222210 00 11222222222
Q ss_pred HHHHHhhcCccchhhhhhcccCCccchhhhhHHHHHHHHH-HHHHHHHHHHHHHH-hhcchhhhHHHHHHHHHHHHHHhh
Q 019756 235 GCSAFNSIGLAGIPFVIMSEIFPINVKASAGSLVILICWS-CSWIVTYTFNFMMQ-WSSAGTFFIFSGIGFFTVLFVAKI 312 (336)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~i~~~~~ 312 (336)
..+....+..+....++.|.+|++.|+++.|+.+...++ |..++|.+.+.+.+ .++...+++.+++.+++.++....
T Consensus 355 -~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 355 -VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp -HHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 233333334455578999999999999999999999999 99999999999988 677788888888877777655544
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.65 E-value=4.1e-15 Score=141.00 Aligned_cols=152 Identities=9% Similarity=-0.011 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCCceeee-----eecccccccccccccccccccccchhhhhhhhhhHHHHHHHHH
Q 019756 137 SIGSRGIAIIQIPAVITSVLLMDKAGRKPLLM-----VITTSRTLFKMFDFVDQRGYENGYQYLQISACGMAFGCFLIGL 211 (336)
Q Consensus 137 ~~~~~~~~~~~~~g~~~~~~l~dr~grr~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (336)
........+..+++..+.+++.||+|||+... . +....++++.++..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~----------------------------~~~~~~~~~~~~~~ 373 (491)
T 4aps_A 322 SWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAV----------------------------GLMFAGLSFLLMAI 373 (491)
T ss_dssp GGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHH----------------------------HHHHHHHHHTTTHH
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHH----------------------------HHHHHHHHHHHHHH
Confidence 36677777888889999999999999998765 3 44445554444443
Q ss_pred HHhhhccccccchhHHHHHHHHHHHHHHhhcCccchhhhhhcccCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019756 212 SFYLKEVKNMNDAAHILVLVGFMGCSAFNSIGLAGIPFVIMSEIFPINVKASAGSLVILICWSCSWIVTYTFNFMMQWSS 291 (336)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 291 (336)
........ .....+...+. ..+.+.......+..+.++.|.+|++.|+++.|+.+....+|..+++.+.+.+.+.++
T Consensus 374 ~~~~~~~~--~~~~~~~~~~~-~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~ 450 (491)
T 4aps_A 374 PGALYGTS--GKVSPLWLVGS-WALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSE 450 (491)
T ss_dssp HHHHCCCC--TTCCTHHHHHH-HHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSST
T ss_pred HHHhcCCC--CCccHHHHHHH-HHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 22211101 01122222222 2333333334456778999999999999999999999999999999999998887777
Q ss_pred chhhhHHHHHHHHHHHHHHhhccCCCCC
Q 019756 292 AGTFFIFSGIGFFTVLFVAKIVPETKGR 319 (336)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~~~~~~et~~~ 319 (336)
...+.+.+++++++.++.+++.++.+++
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 451 VAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp THHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888877777776766554
No 4
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.64 E-value=7.3e-17 Score=150.43 Aligned_cols=142 Identities=10% Similarity=0.063 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCceeeeeecccccccccccccccccccccchhhhhhhhhhHHHHHHHHHHHhhhcc
Q 019756 139 GSRGIAIIQIPAVITSVLLMDKAGRKPLLMVITTSRTLFKMFDFVDQRGYENGYQYLQISACGMAFGCFLIGLSFYLKEV 218 (336)
Q Consensus 139 ~~~~~~~~~~~g~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (336)
......+..+++.++.++++||+|||+.+.. +..+.+++....+..
T Consensus 264 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~----------------------------~~~~~~~~~~~~~~~------ 309 (417)
T 2cfq_A 264 VTTMGELLNASIMFFAPLIINRIGGKNALLL----------------------------AGTIMSVRIIGSSFA------ 309 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH----------------------------HHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcHHHHHHH----------------------------HHHHHHHHHHHHHHh------
Confidence 3445556778889999999999999998776 555555543333211
Q ss_pred ccccchhHHHHHHHHHHHHHHhhcCccchhhhhhcccCCccchhhhhHHH-HHHHHHHHHHHHHHHHHHHH-hhcchhhh
Q 019756 219 KNMNDAAHILVLVGFMGCSAFNSIGLAGIPFVIMSEIFPINVKASAGSLV-ILICWSCSWIVTYTFNFMMQ-WSSAGTFF 296 (336)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~-~~~~~~~~ 296 (336)
...+..++.... .........+..+.+++|.+|++.|+++.++. +...++|+.++|.+.+.+.+ .++...|.
T Consensus 310 -----~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~ 383 (417)
T 2cfq_A 310 -----TSALEVVILKTL-HMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYL 383 (417)
T ss_dssp -----CSHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHH
T ss_pred -----ccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHH
Confidence 011122121111 11111112233468999999999999999995 77888999999999998887 56677788
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCC
Q 019756 297 IFSGIGFFTVLFVAKIVPETKGRT 320 (336)
Q Consensus 297 ~~~~~~~~~~i~~~~~~~et~~~~ 320 (336)
+.+++.+++.++.+...||+++.+
T Consensus 384 ~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 384 VLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHHHHHHHHHhhhcCCCchH
Confidence 888888887777666677766543
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.62 E-value=8.8e-15 Score=136.41 Aligned_cols=171 Identities=13% Similarity=0.013 Sum_probs=113.8
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhHHHHHhHHHH-HHHh-CCCch---hHHHHHHHHHHHHHHHHHHhhhhcC
Q 019756 88 EARLLNLFQRRYANSLIIGVGLMLLQQFGGASAMAYYTSSI-FEKA-GASGS---IGSRGIAIIQIPAVITSVLLMDKAG 162 (336)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~---~~~~~~~~~~~~g~~~~~~l~dr~g 162 (336)
+.++++.++++..+...+..++... .......+.|.+ .++. |.+.. .......++.+++.++.++++||+|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~ 323 (438)
T 3o7q_A 248 SASLSRLARIRHWRWAVLAQFCYVG----AQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFA 323 (438)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hhhHHHHHhChHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456677777766665554433332 234455666666 6665 77765 5566677888999999999999999
Q ss_pred CceeeeeecccccccccccccccccccccchhhhhhhhhhHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHhhc
Q 019756 163 RKPLLMVITTSRTLFKMFDFVDQRGYENGYQYLQISACGMAFGCFLIGLSFYLKEVKNMNDAAHILVLVGFMGCSAFNSI 242 (336)
Q Consensus 163 rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (336)
||+.+.. +.++.++++++.... .. ....+.... .+++..
T Consensus 324 ~~~~~~~----------------------------~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~-~g~~~~ 362 (438)
T 3o7q_A 324 PHKVLAA----------------------------YALIAMALCLISAFA-----------GG-HVGLIALTL-CSAFMS 362 (438)
T ss_dssp HHHHHHH----------------------------HHHHHHHHHHHHHHC-----------CH-HHHHHHHHH-HHHHHT
T ss_pred chHHHHH----------------------------HHHHHHHHHHHHHHc-----------CC-cHHHHHHHH-HHHHHH
Confidence 9998877 666665555544321 11 112222222 333333
Q ss_pred CccchhhhhhcccCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-hh-cchhhhHHHHHHHHH
Q 019756 243 GLAGIPFVIMSEIFPINVKASAGSLVILICWSCSWIVTYTFNFMMQ-WS-SAGTFFIFSGIGFFT 305 (336)
Q Consensus 243 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~ 305 (336)
...+..+.+..|.+|++ |+++.++.. .+.+|+.++|.+.+.+.+ .+ +...+.+.+++.++.
T Consensus 363 ~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 363 IQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp THHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 44567788889999977 888888877 678999999999999998 56 777777655544443
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.47 E-value=1.2e-13 Score=129.04 Aligned_cols=173 Identities=11% Similarity=-0.003 Sum_probs=127.4
Q ss_pred HHHHHHhhhhHHHHHhHHHHHHHhCCCch---hHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeccccccccccccccc
Q 019756 109 LMLLQQFGGASAMAYYTSSIFEKAGASGS---IGSRGIAIIQIPAVITSVLLMDKAGRKPLLMVITTSRTLFKMFDFVDQ 185 (336)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~g~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~ 185 (336)
...+...........+.|.+.++. .+.. +......++..++.+..|+++||+|||+.+..
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~---------------- 97 (451)
T 1pw4_A 35 FGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPA---------------- 97 (451)
T ss_dssp HHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHH----------------
Confidence 333333334555667778777777 6654 66777788889999999999999999999888
Q ss_pred ccccccchhhhhhhhhhHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHhhcCccchhhhhhcccCCccchhhhh
Q 019756 186 RGYENGYQYLQISACGMAFGCFLIGLSFYLKEVKNMNDAAHILVLVGFMGCSAFNSIGLAGIPFVIMSEIFPINVKASAG 265 (336)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 265 (336)
+.++.+++.++.++..... .+.+..++. ..+.+.......+...++++|.+|++.|+++.
T Consensus 98 ------------~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~-~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 157 (451)
T 1pw4_A 98 ------------GLILAAAVMLFMGFVPWAT-------SSIAVMFVL-LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIV 157 (451)
T ss_dssp ------------HHHHHHHHHHHHHHCHHHH-------SSSSHHHHH-HHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHH
T ss_pred ------------HHHHHHHHHHHHHhhhhcc-------ccHHHHHHH-HHHHHHHhhhccchHHHHHHHHCCchhhhHHH
Confidence 8888888777776521110 111222222 33334434345567789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hh-cchhhhHHHHHHHHHHHHHHhhccCCCC
Q 019756 266 SLVILICWSCSWIVTYTFNFMMQ-WS-SAGTFFIFSGIGFFTVLFVAKIVPETKG 318 (336)
Q Consensus 266 ~~~~~~~~~g~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~i~~~~~~~et~~ 318 (336)
++.+....+|..++|.+.+.+.+ .+ |+..+++.+++.++..++.++++||++.
T Consensus 158 ~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 158 SVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 99999999999999999998777 77 9999999998888877777777777543
No 7
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.46 E-value=6.6e-13 Score=123.65 Aligned_cols=165 Identities=10% Similarity=-0.032 Sum_probs=120.0
Q ss_pred hhHHHHHhHHHHHHHhCCCch---hHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeecccccccccccccccccccccch
Q 019756 117 GASAMAYYTSSIFEKAGASGS---IGSRGIAIIQIPAVITSVLLMDKAGRKPLLMVITTSRTLFKMFDFVDQRGYENGYQ 193 (336)
Q Consensus 117 ~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~g~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (336)
.........|.+.++.|.+.. +......++..++.+..|+++||+|||+.+..
T Consensus 41 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~------------------------ 96 (438)
T 3o7q_A 41 ANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIIT------------------------ 96 (438)
T ss_dssp HHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHH------------------------
T ss_pred HHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHH------------------------
Confidence 345677778888899998876 66677778888999999999999999999988
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHhhcCccchhhhhhcccCCccchhhhhHHHHHHHH
Q 019756 194 YLQISACGMAFGCFLIGLSFYLKEVKNMNDAAHILVLVGFMGCSAFNSIGLAGIPFVIMSEIFPINVKASAGSLVILICW 273 (336)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 273 (336)
+.++.+++.++...... ..+...++....+.+.......+...++++|.+|++.|+.+.++.+....
T Consensus 97 ----~~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 163 (438)
T 3o7q_A 97 ----GLFLYALGAALFWPAAE---------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS 163 (438)
T ss_dssp ----HHHHHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhccc---------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence 88888877777632211 11222233333334444444556678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-Hh-h-------------------------cchhhhHHHHHHHHHHHHHHh-hccCCCC
Q 019756 274 SCSWIVTYTFNFMM-QW-S-------------------------SAGTFFIFSGIGFFTVLFVAK-IVPETKG 318 (336)
Q Consensus 274 ~g~~~~~~~~~~l~-~~-~-------------------------~~~~~~~~~~~~~~~~i~~~~-~~~et~~ 318 (336)
+|..++|.+.+.+. +. + |++.+.+.+.+.++..++..+ ..||+++
T Consensus 164 ~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 236 (438)
T 3o7q_A 164 FGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS 236 (438)
T ss_dssp HHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT
T ss_pred HHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 99999999999888 42 2 677777766666555544333 2465543
No 8
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.44 E-value=3.6e-13 Score=123.13 Aligned_cols=163 Identities=9% Similarity=0.095 Sum_probs=125.3
Q ss_pred hhHHHHHhHHHHHHHhCCCch---hHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeecccccccccccccccccccccch
Q 019756 117 GASAMAYYTSSIFEKAGASGS---IGSRGIAIIQIPAVITSVLLMDKAGRKPLLMVITTSRTLFKMFDFVDQRGYENGYQ 193 (336)
Q Consensus 117 ~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~g~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (336)
.........|.+.++.|.+.. +......++..++.+..|+++||+|||+.+..
T Consensus 15 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~------------------------ 70 (375)
T 2gfp_A 15 AQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILV------------------------ 70 (375)
T ss_dssp HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHH------------------------
T ss_pred HHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH------------------------
Confidence 345556667778888888876 56677778888999999999999999999998
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHhhcCccchhhhhhcccCCccchhhhhHHHHHHHH
Q 019756 194 YLQISACGMAFGCFLIGLSFYLKEVKNMNDAAHILVLVGFMGCSAFNSIGLAGIPFVIMSEIFPINVKASAGSLVILICW 273 (336)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 273 (336)
+.....++....... . +...++....+.+.......+...+++.|.+|+++|+++.++.+....
T Consensus 71 ----~~~~~~~~~~~~~~~-----------~-~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (375)
T 2gfp_A 71 ----GMSIFMLATLVAVTT-----------S-SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGIL 134 (375)
T ss_dssp ----HHHHHHHHHHHHHHH-----------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHh-----------c-cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 888887777776643 1 222233333334444444556778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-hhcchhhhHHHHHHHHHHHHHHhhccCCCCC
Q 019756 274 SCSWIVTYTFNFMMQ-WSSAGTFFIFSGIGFFTVLFVAKIVPETKGR 319 (336)
Q Consensus 274 ~g~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~i~~~~~~~et~~~ 319 (336)
+|..++|.+.+.+.+ .+|+..+.+.+++.++..+...+..||++++
T Consensus 135 ~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 135 VSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 999999999998877 6888888888888877777566677876543
No 9
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.36 E-value=1.8e-13 Score=125.10 Aligned_cols=209 Identities=14% Similarity=-0.009 Sum_probs=122.0
Q ss_pred hhhHHHHHhhCccchHHHHHHhHHHHHHHHH-HHhcCCCChHHHHhcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Q 019756 4 FGCSLAYFFGNVIPWRILALIGVIPCVLQLI-GLFFIPESPRWLVKIGKEKEFETTLQNLRGKGADISQEAAEIRDHIEI 82 (336)
Q Consensus 4 ~G~~l~~~l~~~~gWr~~f~i~~i~~~i~~~-~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
+|+.++..+.+..|||+.|++.++..++..+ ..+.+||+|+.. ++
T Consensus 139 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------------------------------- 184 (375)
T 2gfp_A 139 LAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD---AP------------------------------- 184 (375)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT---CC-------------------------------
T ss_pred hhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC---cc-------------------------------
Confidence 4556666666677999999998777766655 566789987420 00
Q ss_pred hhchhhHHHHHHhhhhhHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH-hCCCch---hHHHHHHHHHHHHHHHHHHhh
Q 019756 83 SQKHSEARLLNLFQRRYANSLIIGVGLMLLQQFGGASAMAYYTSSIFEK-AGASGS---IGSRGIAIIQIPAVITSVLLM 158 (336)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~---~~~~~~~~~~~~g~~~~~~l~ 158 (336)
+++.+.++++.++++..+...+..++... .......+.|.+.++ .|.+.. .......++.+++.++.+++.
T Consensus 185 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 259 (375)
T 2gfp_A 185 -RTRLLTSYKTLFGNSGFNCYLLMLIGGLA----GIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPN 259 (375)
T ss_dssp -CCCTTTCSTHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTT
T ss_pred -cccHHHHHHHHhcCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01112234455666655554443333222 234445555555444 565544 455666677888888888899
Q ss_pred hhcCCceeeeeecccccccccccccccccccccchhhhhhhhh-hHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHH
Q 019756 159 DKAGRKPLLMVITTSRTLFKMFDFVDQRGYENGYQYLQISACG-MAFGCFLIGLSFYLKEVKNMNDAAHILVLVGFMGCS 237 (336)
Q Consensus 159 dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (336)
||.+||. .. +... ...+......... . ....+...+......
T Consensus 260 ~r~~~~~--~~----------------------------~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~l~g 302 (375)
T 2gfp_A 260 KRFSTLM--WQ----------------------------SVICCLLAGLLMWIPDWF-G------VMNVWTLLVPAALFF 302 (375)
T ss_dssp THHHHHH--HH----------------------------HHHHHHHTSSSSSHHHHH-H------HHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HH----------------------------HHHHHHHHHHHHHHHhhh-c------cccHHHHHHHHHHHH
Confidence 9888732 22 1111 1111111010000 0 011222222223323
Q ss_pred HHhhcCccchhhhhhcccCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019756 238 AFNSIGLAGIPFVIMSEIFPINVKASAGSLVILICWSCSWIVTYTFNFMMQWS 290 (336)
Q Consensus 238 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 290 (336)
.+. ....+....++.|.+| +.|+++.|+.+....+|..++|.+.+.+.+.+
T Consensus 303 ~~~-~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 353 (375)
T 2gfp_A 303 FGA-GMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG 353 (375)
T ss_dssp HHH-HHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH
T ss_pred HHH-HHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 222 2345667789999999 89999999999999999999999999887743
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.35 E-value=2.5e-12 Score=121.77 Aligned_cols=141 Identities=9% Similarity=-0.024 Sum_probs=105.7
Q ss_pred hCCCch---hHHHHHHHHHHHHHHHHHHhhhh-cCCceeeeeecccccccccccccccccccccchhhhhhhhhhHHHHH
Q 019756 132 AGASGS---IGSRGIAIIQIPAVITSVLLMDK-AGRKPLLMVITTSRTLFKMFDFVDQRGYENGYQYLQISACGMAFGCF 207 (336)
Q Consensus 132 ~g~~~~---~~~~~~~~~~~~g~~~~~~l~dr-~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (336)
.|.+.. +......++..++.+++|+++|| +|||+++.. +.++.+++.+
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~----------------------------~~~~~~~~~~ 100 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFW----------------------------GGVLIMLGHI 100 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHH----------------------------HHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHH----------------------------HHHHHHHHHH
Confidence 677765 66677788889999999999999 899999988 7777777776
Q ss_pred HHHHHHhhhccccccchhHHHHHHHHHHHHHHhhcCccchhhhhhcccCCccc--hhhhhHHHHHHHHHHHHHHHHHHHH
Q 019756 208 LIGLSFYLKEVKNMNDAAHILVLVGFMGCSAFNSIGLAGIPFVIMSEIFPINV--KASAGSLVILICWSCSWIVTYTFNF 285 (336)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~g~~~~~~~~~~ 285 (336)
+.+.. .+.+...+ ...+.+.......+...++++|.+|++. |+.+.++.+....+|..++|.+.+.
T Consensus 101 ~~~~~-----------~~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 168 (491)
T 4aps_A 101 VLALP-----------FGASALFG-SIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGA 168 (491)
T ss_dssp HHHSC-----------CSTTHHHH-HHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-----------hhHHHHHH-HHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHH
Confidence 66532 11122222 2333333333445677899999999988 7778888899999999999999999
Q ss_pred HHH-hhcchhhhHHHHHHHHHHHHHHhh
Q 019756 286 MMQ-WSSAGTFFIFSGIGFFTVLFVAKI 312 (336)
Q Consensus 286 l~~-~~~~~~~~~~~~~~~~~~i~~~~~ 312 (336)
+.+ .+|++.|++.++..+++.+...+.
T Consensus 169 l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 169 AQEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 888 888888888877776666654444
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.27 E-value=4e-11 Score=114.43 Aligned_cols=152 Identities=13% Similarity=0.052 Sum_probs=108.9
Q ss_pred HHHhHHH-HHHHhC------CCch---hHHHHHHHHHHHHHHHHHHhhhhc-CCceeeeeeccccccccccccccccccc
Q 019756 121 MAYYTSS-IFEKAG------ASGS---IGSRGIAIIQIPAVITSVLLMDKA-GRKPLLMVITTSRTLFKMFDFVDQRGYE 189 (336)
Q Consensus 121 ~~~~~~~-~~~~~g------~~~~---~~~~~~~~~~~~g~~~~~~l~dr~-grr~~l~~~~~~~~~~~~~~~~~~~~~~ 189 (336)
...+.+. +.++.| .+.. +......++..++.+.+|+++||+ |||+.+..
T Consensus 31 ~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~-------------------- 90 (524)
T 2xut_A 31 MRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILW-------------------- 90 (524)
T ss_dssp HHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHH--------------------
T ss_pred HHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH--------------------
Confidence 3334444 445567 6665 566677788889999999999999 99999888
Q ss_pred ccchhhhhhhhhhHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHhhcCccchhhhhhcccCCccchhhhhHH--
Q 019756 190 NGYQYLQISACGMAFGCFLIGLSFYLKEVKNMNDAAHILVLVGFMGCSAFNSIGLAGIPFVIMSEIFPINVKASAGSL-- 267 (336)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~-- 267 (336)
+.++.+++.++..... .+.+.. .....+.+.......+...++++|.+|++.|+++.+.
T Consensus 91 --------~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 151 (524)
T 2xut_A 91 --------LSLIYCVGHAFLAIFE----------HSVQGF-YTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFD 151 (524)
T ss_dssp --------HHHHHHHHHHHHHHTS----------SCHHHH-HHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHhc----------ccHHHH-HHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHH
Confidence 7777777766655320 012222 3333334444444567778999999999999877666
Q ss_pred -HHHHHHHHHHHHHHHHHHHHH-hhcchhhhHHHHHHHHHHHHHHh
Q 019756 268 -VILICWSCSWIVTYTFNFMMQ-WSSAGTFFIFSGIGFFTVLFVAK 311 (336)
Q Consensus 268 -~~~~~~~g~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~i~~~~ 311 (336)
.+....+|..++|.+.+.+.+ .+|...|.+.+++.+++.+....
T Consensus 152 ~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 152 MFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999998887 78888888887776666554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.26 E-value=8.4e-11 Score=111.15 Aligned_cols=123 Identities=11% Similarity=-0.043 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeecccccccccccccccccccccchhhhhhhhhhHHHHHHHHHHHhhhc
Q 019756 138 IGSRGIAIIQIPAVITSVLLMDKAGRKPLLMVITTSRTLFKMFDFVDQRGYENGYQYLQISACGMAFGCFLIGLSFYLKE 217 (336)
Q Consensus 138 ~~~~~~~~~~~~g~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (336)
+......++.++|++++|+++||+|||+.+.+ +.+++.++.++.++......
T Consensus 59 ~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~----------------------------~~~l~~i~~i~~a~~~~~~~ 110 (491)
T 4gc0_A 59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKI----------------------------AAVLFFISGVGSAWPELGFT 110 (491)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHH----------------------------HHHHHHHHHHHHHCTTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH----------------------------HHHHHHHHHHHHHHHhhhhh
Confidence 44455678889999999999999999999998 88888888877764211100
Q ss_pred cc------cccchhHHHHHHHHHHHHHHhhcCccchhhhhhcccCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 019756 218 VK------NMNDAAHILVLVGFMGCSAFNSIGLAGIPFVIMSEIFPINVKASAGSLVILICWSCSWIVTYTFNFMMQ 288 (336)
Q Consensus 218 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 288 (336)
.. ......+...++...++.+....+..+...++++|..|++.|+...++.......|..+++.+......
T Consensus 111 ~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~ 187 (491)
T 4gc0_A 111 SINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIAR 187 (491)
T ss_dssp CSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcc
Confidence 00 000122344445555555555556677788999999999999999999999999998888887766554
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.08 E-value=2.8e-11 Score=115.57 Aligned_cols=82 Identities=12% Similarity=0.022 Sum_probs=53.3
Q ss_pred CccchhhhhhcccCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHh---hc---------chhhhHHHHHHHHHHHHHH
Q 019756 243 GLAGIPFVIMSEIFPINVKASAGSLVILICWSCSWIVTYTFNFMMQW---SS---------AGTFFIFSGIGFFTVLFVA 310 (336)
Q Consensus 243 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~---------~~~~~~~~~~~~~~~i~~~ 310 (336)
...+....++.|..|++.|++++|+.+...++|+.++|.+.+.+.+. +| ...+++.+++.+++.++.+
T Consensus 421 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (524)
T 2xut_A 421 LVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFA 500 (524)
T ss_dssp HHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHH
Confidence 34466678999999999999999999999999999999999987652 11 1226667777777766666
Q ss_pred hhccCCCCCCHHHH
Q 019756 311 KIVPETKGRTLEEI 324 (336)
Q Consensus 311 ~~~~et~~~~~~~~ 324 (336)
++.+++++++.++.
T Consensus 501 ~~~~~~~~~~~~~~ 514 (524)
T 2xut_A 501 LYARSYQMQDHYRQ 514 (524)
T ss_dssp --------------
T ss_pred HHHHHhccchhhhh
Confidence 66677665554433
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.68 E-value=5.5e-09 Score=96.94 Aligned_cols=161 Identities=12% Similarity=0.006 Sum_probs=87.6
Q ss_pred HHHHhHHHHHH-HhCCCch---hHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeecccccccccccccccccccccchhh
Q 019756 120 AMAYYTSSIFE-KAGASGS---IGSRGIAIIQIPAVITSVLLMDKAGRKPLLMVITTSRTLFKMFDFVDQRGYENGYQYL 195 (336)
Q Consensus 120 ~~~~~~~~~~~-~~g~~~~---~~~~~~~~~~~~g~~~~~~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (336)
....+.|..++ +.|.+.. .......++..++.++.|+++||+|||+.++.
T Consensus 25 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~-------------------------- 78 (417)
T 2cfq_A 25 AYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLW-------------------------- 78 (417)
T ss_dssp HHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHH--------------------------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH--------------------------
Confidence 33445555544 4677665 66677778899999999999999999999887
Q ss_pred hhhhhhhHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHhhcCccchhhhhhcccCCc--cchhhhhHHHHHHHH
Q 019756 196 QISACGMAFGCFLIGLSFYLKEVKNMNDAAHILVLVGFMGCSAFNSIGLAGIPFVIMSEIFPI--NVKASAGSLVILICW 273 (336)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~~~~~~~~~ 273 (336)
+..+..+............... ... ...........+.. .+.......+..++ +.|+.+.+.......
T Consensus 79 --~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 148 (417)
T 2cfq_A 79 --IITGMLVMFAPFFIFIFGPLLQ----YNI---LVGSIVGGIYLGFC-FNAGAPAVEAFIEKVSRRSNFEFGRARMFGC 148 (417)
T ss_dssp --HHHHTTSCHHHHHHHTHHHHHH----TTC---CHHHHGGGSSTTHH-HHTTHHHHHHHHHHHHHHHTCCHHHHSSSTT
T ss_pred --HHHHHHHHHHHHHHHHHHHHHH----HHH---HHHHHHHHHHHHHH-HhhhHHHHHHHHHHhhhhcccchHHHHHHHH
Confidence 5544433211111000000000 000 00000000000000 01111222233332 355777777777788
Q ss_pred HHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhhccCC
Q 019756 274 SCSWIVTYTFNFMMQWSSAGTFFIFSGIGFFTVLFVAKIVPET 316 (336)
Q Consensus 274 ~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~et 316 (336)
+|..++|.+.+.+.+.+++..|++.++..++..+......||+
T Consensus 149 ~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 191 (417)
T 2cfq_A 149 VGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDA 191 (417)
T ss_dssp THHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSCCCC
T ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcCccc
Confidence 8999999999988887777777776665544444333333444
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=33.80 E-value=15 Score=18.00 Aligned_cols=14 Identities=36% Similarity=0.382 Sum_probs=10.4
Q ss_pred HHHHhhhhcCCcee
Q 019756 153 TSVLLMDKAGRKPL 166 (336)
Q Consensus 153 ~~~~l~dr~grr~~ 166 (336)
+.|.+..|+|||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 35778889999853
Done!