BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019759
(336 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 89/357 (24%), Positives = 153/357 (42%), Gaps = 38/357 (10%)
Query: 3 LQNRQKLHIAMFPWLAYGHIMPFFQVAMFLAE-KGHHVSYI----STPKNIDRLPQIPTN 57
++ + H+A+ P GH++P + A L G V+++ P R + +
Sbjct: 1 MEESKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQR--TVLDS 58
Query: 58 LSSRLSYIQLPLPQLDGLPEGA--ESTAELPIHKV-PYLKKAHDLLQLPLTNFLQDSRV- 113
L S +S + LP L L ES L + + P L+K D +F++ R+
Sbjct: 59 LPSSISSVFLPPVDLTDLSSSTRIESRISLTVTRSNPELRKVFD-------SFVEGGRLP 111
Query: 114 NWIIHDFISHWLPPVAAQLGVNSVFFSIYSAATLCF---TGPPSDVIAGRRQKPEDFTVV 170
++ D VA + V F +A L F + ++ ++ + ++
Sbjct: 112 TALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLML 171
Query: 171 PEWIDFQSNLAFKPYETLINQDGMDDSVSDYLRAAFVLQDCRVVILRSCAEFEPDALRLL 230
P + P QD DD+ L ++ +++ + E EP+A++ L
Sbjct: 172 PGCVPVAGKDFLDPA-----QDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKAL 226
Query: 231 GK--MLQKPVLPVG-LLAPSLQDSAAGEHWPVLKDWLDSKENNSVVYAAFGTEMTLSQEL 287
+ + + PV PVG L+ Q++ E LK WLD++ SV+Y +FG+ TL+ E
Sbjct: 227 QEPGLDKPPVYPVGPLVNIGKQEAKQTEESECLK-WLDNQPLGSVLYVSFGSGGTLTCEQ 285
Query: 288 LHELAYGLEKSGLPFIWIIKNRPLVEGESGLDH--------LLPPGFQDRVSGTGLV 336
L+ELA GL S F+W+I++ + S D LPPGF +R G V
Sbjct: 286 LNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFV 342
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 87/365 (23%), Positives = 148/365 (40%), Gaps = 47/365 (12%)
Query: 6 RQKLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRL--PQIPTNLSSRLS 63
+K H+ M P+ GHI P F++A L +G H+++++T N RL + P
Sbjct: 6 NRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTD 65
Query: 64 YIQLPLPQLDGLP--EG-AESTAELPI----HKVPYLKKAHDLLQL--------PLTNFL 108
+ +P DGL EG + + ++P + +LK +LL P+T +
Sbjct: 66 FNFESIP--DGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLV 123
Query: 109 QDSRVNWIIHDFISHWLPPV-----AAQLGVNSVFFSIYSAATLCFTGPPSDVIAGRRQK 163
D +++ I LP V +A +N + F + + S + G +
Sbjct: 124 SDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLET 183
Query: 164 PEDFTVVPEWIDFQSNLAFKPYETLINQDGMDDSVSDY-LRAAFVLQDCRVVILRSCAEF 222
D WI N K I +D + ++ + A + ++L + E
Sbjct: 184 KVD------WIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNEL 237
Query: 223 EPDALRLLGKMLQKPVLPVGLLAPSLQ--------DSAAGEHWPV---LKDWLDSKENNS 271
E D + L + + P+G L L+ DS W DWL+SKE S
Sbjct: 238 ESDVINALSSTIPS-IYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGS 296
Query: 272 VVYAAFGTEMTLSQELLHELAYGLEKSGLPFIWIIKNRPLVEGESGLDHLLPPGFQDRVS 331
VVY FG+ ++ E L E A+GL F+WII+ ++ G + F + ++
Sbjct: 297 VVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSV----IFSSEFTNEIA 352
Query: 332 GTGLV 336
GL+
Sbjct: 353 DRGLI 357
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 68/156 (43%), Gaps = 28/156 (17%)
Query: 184 PYETLINQDGMDDSVSDYLRAAFVLQDCRVVILRSCAEFEP---DALRLLGKMLQKPVLP 240
P+ T++++ G++ L V + S A P + L K+L V P
Sbjct: 201 PFATMLHKMGLE------------LPRANAVAINSFATIHPLIENELNSKFKLLLN-VGP 247
Query: 241 VGLLAPSLQDSAAGEHWPVLKDWLDSKENNSVVYAAFGTEMTLSQELLHELAYGLEKSGL 300
L P Q + EH + +WLD EN+SVVY +FG+ +T L LA LE+ G
Sbjct: 248 FNLTTP--QRKVSDEHGCL--EWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGF 303
Query: 301 PFIWIIKNRPLVEGESGLDHLLPPGFQDRVSGTGLV 336
PFIW + P LP GF +R G +
Sbjct: 304 PFIWSFRGDP--------KEKLPKGFLERTKTKGKI 331
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 263 WLDSKENNSVVYAAFGTEMTLSQELLHELAYGLEKSGLPFIWIIKNRPLVEGESGLDHLL 322
WL ++ SVVY +FGT T + L+ LE S +PFIW ++++ V L
Sbjct: 264 WLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKARVH--------L 315
Query: 323 PPGFQDRVSGTGLV 336
P GF ++ G G+V
Sbjct: 316 PEGFLEKTRGYGMV 329
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 9/132 (6%)
Query: 10 HIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPL 69
HIAMF A+GH+ P +V L +GH V+Y P D++ T L + LP
Sbjct: 9 HIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKV--AATGPRPVLYHSTLPG 66
Query: 70 PQLDGLPEGAESTAELPIHKVPYLKKAHDLLQLP-LTNFLQDSRVNWIIHDFISHWLPPV 128
P D PE ST L + P+L A + LP L + D + ++HD S+ +
Sbjct: 67 PDAD--PEAWGST--LLDNVEPFLNDA--IQALPQLADAYADDIPDLVLHDITSYPARVL 120
Query: 129 AAQLGVNSVFFS 140
A + GV +V S
Sbjct: 121 ARRWGVPAVSLS 132
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 28/163 (17%)
Query: 186 ETLINQDGMDDSVSDYLRAAFVLQDCRVVILRSCAEFEPDALRLLGKMLQK--PVLPVGL 243
+ N+DG Y + A +D + +I+ + ++ E ++ L +K P+ VG
Sbjct: 190 DACFNKDG---GYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGP 246
Query: 244 L-------APSLQDSAAGEHWPVLKDWLDSKENNSVVYAAFGT-EMTLSQELLHELAYGL 295
L P L + +H +LK WLD + + SVV+ FG+ ++ + E+A GL
Sbjct: 247 LLDLKGQPNPKLDQA---QHDLILK-WLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGL 302
Query: 296 EKSGLPFIWIIKNRPLVEGESGLDHLLPPGFQD--RVSGTGLV 336
+ SG+ F+W S + P GF + + G G++
Sbjct: 303 KHSGVRFLW---------SNSAEKKVFPEGFLEWMELEGKGMI 336
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 28/163 (17%)
Query: 186 ETLINQDGMDDSVSDYLRAAFVLQDCRVVILRSCAEFEPDALRLLGKMLQK--PVLPVGL 243
+ N+DG Y + A +D + +I+ + ++ E ++ L +K P+ VG
Sbjct: 190 DACFNKDG---GYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGP 246
Query: 244 L-------APSLQDSAAGEHWPVLKDWLDSKENNSVVYAAFGT-EMTLSQELLHELAYGL 295
L P L + +H +LK WLD + + SVV+ FG+ ++ + E+A GL
Sbjct: 247 LLDLKGQPNPKLDQA---QHDLILK-WLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGL 302
Query: 296 EKSGLPFIWIIKNRPLVEGESGLDHLLPPGFQD--RVSGTGLV 336
+ SG+ F+W S + P GF + + G G++
Sbjct: 303 KHSGVRFLW---------SNSAEKKVFPEGFLEWMELEGKGMI 336
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 6 RQKLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRL 51
RQ+ HI +GH+ P + LA +GH ++Y++TP D +
Sbjct: 3 RQR-HILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEV 47
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 16/123 (13%)
Query: 10 HIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPL 69
HI+ F +GH+ P + L +GH VSY T + Q+ ++ + Y + L
Sbjct: 14 HISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITDEF---AAQVKAAGATPVVYDSI-L 69
Query: 70 PQ----LDGLPEGAESTAELPIHKVPYLKKAHDLLQLPLTNFLQDSRVNWIIHDFISHWL 125
P+ + PE ES L +L +A +L L + D R + I++D I+ W
Sbjct: 70 PKESNPEESWPEDQESAMGL------FLDEAVRVLPQ-LEDAYADDRPDLIVYD-IASWP 121
Query: 126 PPV 128
PV
Sbjct: 122 APV 124
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 3 LQNRQKLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYIST 44
++ R H+ + ++G I+P V L +GH VSY++
Sbjct: 15 IEGRHXAHLLIVNVASHGLILPTLTVVTELVRRGHRVSYVTA 56
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound
Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound
Form
Length = 415
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 3 LQNRQKLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYIST 44
++ R H+ + ++G I+P V L +GH VSY++
Sbjct: 15 IEGRHXAHLLIVNVASHGLILPTLTVVTELVRRGHRVSYVTA 56
>pdb|1FBA|A Chain A, The Crystal Structure Of Fructose-1,6-Bisphosphate
Aldolase From Drosophila Melanogaster At 2.5 Angstroms
Resolution
pdb|1FBA|B Chain B, The Crystal Structure Of Fructose-1,6-Bisphosphate
Aldolase From Drosophila Melanogaster At 2.5 Angstroms
Resolution
pdb|1FBA|C Chain C, The Crystal Structure Of Fructose-1,6-Bisphosphate
Aldolase From Drosophila Melanogaster At 2.5 Angstroms
Resolution
pdb|1FBA|D Chain D, The Crystal Structure Of Fructose-1,6-Bisphosphate
Aldolase From Drosophila Melanogaster At 2.5 Angstroms
Resolution
Length = 361
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 15/107 (14%)
Query: 243 LLAPSLQDSAAGEHWPVLKDWL-----DSKENNSVVYAA--FGTEMTLSQE-----LLHE 290
++AP AA E P + L ++ E+N Y F T+ L++ L HE
Sbjct: 23 IVAPGKGILAADESGPTMGKRLQDIGVENTEDNRRAYRQLLFSTDPKLAENISGVILFHE 82
Query: 291 LAYGLEKSGLPFIWIIKNRPLVEGESGLDHLLPP--GFQDRVSGTGL 335
Y G PF I+K + ++ G +D + P G +D V+ GL
Sbjct: 83 TLYQKADDGTPFAEILKKKGIILGIK-VDKGVVPLFGSEDEVTTQGL 128
>pdb|3PRY|A Chain A, Crystal Structure Of The Middle Domain Of Human Hsp90-Beta
Refined At 2.3 A Resolution
pdb|3PRY|B Chain B, Crystal Structure Of The Middle Domain Of Human Hsp90-Beta
Refined At 2.3 A Resolution
pdb|3PRY|C Chain C, Crystal Structure Of The Middle Domain Of Human Hsp90-Beta
Refined At 2.3 A Resolution
Length = 268
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
Query: 212 RVVILRSCAEFEPDALRLLGKMLQKPVLPVGLLAPSLQDSA---------AGEHWPVLKD 262
RV I+ SC E P+ L + ++ LP+ + LQ S + + +
Sbjct: 77 RVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSE 136
Query: 263 WLDSKENNSVVYAAFGTEMTL 283
+ KEN Y AF + L
Sbjct: 137 LAEDKENYKKFYEAFSKNLKL 157
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium
Ulcerans
Length = 378
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 10/130 (7%)
Query: 210 DCRVVILRSCAEFEP-DALRLLGKMLQKPVLPVGLLAPSLQDSAAGEHWPVLKDWLDSKE 268
D R +I FE AL L + VLP LA SL++SAA + ++DW+D +
Sbjct: 41 DLRYLIGSRADTFERLTALVLPASGVPTIVLPRLELA-SLKESAASDLGVCVRDWVDGDD 99
Query: 269 NNSVVYAAFG-----TEMTLSQELLHELAYGLEKSGLPFIW--IIKNRPLVEGESGLDHL 321
+V A G T +T S LH L LP + +++ +V+ + +D L
Sbjct: 100 PYQLVAVALGGAPAATAVTDSMPALHLLPLADALGVLPVLATDVLRQLRMVKEAAEVDAL 159
Query: 322 LPPGFQ-DRV 330
G DRV
Sbjct: 160 AKAGAAIDRV 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,804,749
Number of Sequences: 62578
Number of extensions: 453905
Number of successful extensions: 858
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 842
Number of HSP's gapped (non-prelim): 18
length of query: 336
length of database: 14,973,337
effective HSP length: 99
effective length of query: 237
effective length of database: 8,778,115
effective search space: 2080413255
effective search space used: 2080413255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)