Query 019759
Match_columns 336
No_of_seqs 125 out of 1275
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 04:19:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019759.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019759hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02670 transferase, transfer 100.0 3.9E-50 8.4E-55 375.9 29.2 328 7-336 5-342 (472)
2 PLN00414 glycosyltransferase f 100.0 3.6E-49 7.8E-54 368.6 28.8 310 7-336 3-315 (446)
3 PLN02764 glycosyltransferase f 100.0 2.1E-48 4.6E-53 361.5 29.0 310 7-336 4-320 (453)
4 PLN02863 UDP-glucoronosyl/UDP- 100.0 9.6E-48 2.1E-52 361.9 28.6 325 6-336 7-346 (477)
5 PLN02208 glycosyltransferase f 100.0 2.5E-47 5.3E-52 355.9 28.4 310 7-336 3-314 (442)
6 PLN02410 UDP-glucoronosyl/UDP- 100.0 2E-47 4.3E-52 357.4 27.6 316 1-336 1-328 (451)
7 PLN02534 UDP-glycosyltransfera 100.0 4.8E-47 1E-51 356.7 27.7 324 7-336 7-347 (491)
8 PLN02992 coniferyl-alcohol glu 100.0 4.1E-47 8.9E-52 355.9 26.7 315 8-336 5-341 (481)
9 PLN03015 UDP-glucosyl transfer 100.0 5.3E-46 1.2E-50 346.5 27.6 314 9-336 4-338 (470)
10 PLN03004 UDP-glycosyltransfera 100.0 1.4E-45 3E-50 343.8 26.6 319 8-336 3-337 (451)
11 PLN00164 glucosyltransferase; 100.0 1.4E-44 3.1E-49 341.4 26.9 317 7-336 2-342 (480)
12 PLN02555 limonoid glucosyltran 100.0 1.7E-44 3.8E-49 338.9 27.3 318 1-336 1-341 (480)
13 PLN02562 UDP-glycosyltransfera 100.0 3.1E-44 6.6E-49 336.7 26.6 307 8-336 6-332 (448)
14 PLN02152 indole-3-acetate beta 100.0 3.4E-44 7.4E-49 334.8 26.7 305 8-336 3-331 (455)
15 PLN02207 UDP-glycosyltransfera 100.0 2.7E-44 5.9E-49 336.2 25.1 314 7-336 2-336 (468)
16 PLN02173 UDP-glucosyl transfer 100.0 3.9E-44 8.4E-49 334.0 25.8 295 6-335 3-320 (449)
17 PLN03007 UDP-glucosyltransfera 100.0 1.1E-43 2.4E-48 336.7 27.5 324 7-336 4-348 (482)
18 PLN02210 UDP-glucosyl transfer 100.0 1.9E-42 4.1E-47 325.0 28.0 311 1-336 1-328 (456)
19 PLN02554 UDP-glycosyltransfera 100.0 3.4E-42 7.3E-47 326.3 27.3 317 8-336 2-346 (481)
20 PLN02167 UDP-glycosyltransfera 100.0 3.2E-42 6.9E-47 326.0 25.7 322 6-336 1-344 (475)
21 PLN02448 UDP-glycosyltransfera 100.0 3.6E-40 7.8E-45 311.3 26.1 292 6-309 8-313 (459)
22 PHA03392 egt ecdysteroid UDP-g 99.9 1.1E-26 2.3E-31 221.3 13.2 277 8-310 20-339 (507)
23 PF00201 UDPGT: UDP-glucoronos 99.9 3.9E-27 8.5E-32 226.6 -6.2 273 10-309 2-316 (500)
24 KOG1192 UDP-glucuronosyl and U 99.9 1.4E-24 3E-29 208.9 8.6 282 8-310 5-321 (496)
25 TIGR01426 MGT glycosyltransfer 99.8 4E-20 8.7E-25 172.7 12.6 258 14-309 1-264 (392)
26 cd03784 GT1_Gtf_like This fami 99.8 1.6E-19 3.5E-24 169.0 10.5 259 9-310 1-280 (401)
27 COG1819 Glycosyl transferases, 99.4 4.8E-13 1.1E-17 124.6 8.9 123 9-141 2-124 (406)
28 PF03033 Glyco_transf_28: Glyc 99.1 2.2E-11 4.8E-16 96.7 0.8 121 11-143 1-131 (139)
29 PRK12446 undecaprenyldiphospho 98.3 6.6E-05 1.4E-09 69.1 18.8 114 10-141 3-122 (352)
30 PF13528 Glyco_trans_1_3: Glyc 98.3 4.7E-06 1E-10 75.5 10.4 115 10-142 2-123 (318)
31 TIGR00661 MJ1255 conserved hyp 98.1 1.3E-05 2.8E-10 72.9 8.6 115 11-141 2-121 (321)
32 COG0707 MurG UDP-N-acetylgluco 97.3 0.0046 9.9E-08 56.8 12.9 118 10-144 2-125 (357)
33 cd03785 GT1_MurG MurG is an N- 97.2 0.0052 1.1E-07 56.2 12.5 114 10-139 1-118 (350)
34 PRK00726 murG undecaprenyldiph 97.2 0.0075 1.6E-07 55.5 13.0 113 9-139 2-120 (357)
35 TIGR01133 murG undecaprenyldip 97.2 0.0094 2E-07 54.5 13.4 116 10-139 2-119 (348)
36 cd03818 GT1_ExpC_like This fam 96.7 0.045 9.8E-07 51.1 13.5 115 10-141 1-117 (396)
37 TIGR00215 lpxB lipid-A-disacch 96.4 0.02 4.4E-07 53.4 9.6 111 9-139 6-119 (385)
38 cd03816 GT1_ALG1_like This fam 96.4 0.083 1.8E-06 49.8 13.3 121 9-141 4-129 (415)
39 TIGR03590 PseG pseudaminic aci 96.3 0.03 6.6E-07 49.8 9.2 93 17-139 12-109 (279)
40 PF13579 Glyco_trans_4_4: Glyc 96.2 0.0072 1.6E-07 48.0 4.6 95 23-140 5-103 (160)
41 COG4671 Predicted glycosyl tra 96.2 0.059 1.3E-06 48.5 10.3 105 9-124 10-118 (400)
42 cd03814 GT1_like_2 This family 95.8 0.1 2.3E-06 47.2 10.9 99 19-141 14-115 (364)
43 PF13477 Glyco_trans_4_2: Glyc 95.8 0.19 4E-06 39.2 10.8 101 10-139 1-105 (139)
44 PLN02871 UDP-sulfoquinovose:DA 95.7 0.18 4E-06 48.2 12.6 112 6-140 56-175 (465)
45 cd03800 GT1_Sucrose_synthase T 95.7 0.13 2.7E-06 47.7 11.2 107 19-140 21-131 (398)
46 cd03823 GT1_ExpE7_like This fa 95.7 0.2 4.3E-06 45.2 12.2 111 19-141 15-128 (359)
47 cd04962 GT1_like_5 This family 95.6 0.15 3.2E-06 46.8 11.3 110 10-140 2-118 (371)
48 cd03808 GT1_cap1E_like This fa 94.9 0.49 1.1E-05 42.4 12.0 108 10-140 1-110 (359)
49 PRK00025 lpxB lipid-A-disaccha 94.8 0.16 3.5E-06 47.0 8.8 112 9-140 2-116 (380)
50 cd03794 GT1_wbuB_like This fam 94.8 0.5 1.1E-05 42.9 11.9 29 19-47 14-42 (394)
51 PF04007 DUF354: Protein of un 94.5 0.24 5.2E-06 45.1 8.8 105 20-145 11-115 (335)
52 cd03796 GT1_PIG-A_like This fa 94.2 0.46 1E-05 44.4 10.4 102 20-140 15-120 (398)
53 cd03817 GT1_UGDG_like This fam 94.2 0.51 1.1E-05 42.7 10.5 31 17-47 12-42 (374)
54 TIGR02468 sucrsPsyn_pln sucros 93.9 0.82 1.8E-05 47.7 12.0 131 2-141 163-341 (1050)
55 PRK10307 putative glycosyl tra 93.8 1.2 2.6E-05 41.7 12.4 22 25-46 21-42 (412)
56 PLN02846 digalactosyldiacylgly 93.2 1.8 3.8E-05 41.4 12.4 39 7-45 3-46 (462)
57 PF13439 Glyco_transf_4: Glyco 93.2 0.91 2E-05 36.3 9.4 100 18-143 11-111 (177)
58 TIGR02472 sucr_P_syn_N sucrose 92.9 1.5 3.2E-05 41.7 11.6 108 20-140 27-144 (439)
59 PF06722 DUF1205: Protein of u 92.7 0.37 8E-06 35.3 5.6 54 257-310 27-85 (97)
60 cd03802 GT1_AviGT4_like This f 92.6 1.9 4.2E-05 38.6 11.5 106 10-141 2-115 (335)
61 cd03805 GT1_ALG2_like This fam 92.5 2.2 4.7E-05 39.5 12.0 36 10-45 2-39 (392)
62 PF01975 SurE: Survival protei 92.1 1.3 2.8E-05 37.1 8.8 118 10-142 2-134 (196)
63 TIGR03449 mycothiol_MshA UDP-N 91.7 3.8 8.3E-05 38.1 12.7 110 18-141 19-132 (405)
64 cd03819 GT1_WavL_like This fam 91.5 1.1 2.4E-05 40.6 8.7 98 19-141 10-109 (355)
65 TIGR02470 sucr_synth sucrose s 91.3 5.2 0.00011 40.8 13.6 111 19-140 279-415 (784)
66 cd03801 GT1_YqgM_like This fam 91.0 2.5 5.3E-05 37.8 10.4 102 19-142 14-117 (374)
67 cd03820 GT1_amsD_like This fam 90.9 2.9 6.2E-05 37.1 10.7 100 18-140 12-112 (348)
68 PLN00142 sucrose synthase 90.4 2.6 5.7E-05 43.0 10.6 30 112-141 408-439 (815)
69 PF12000 Glyco_trans_4_3: Gkyc 90.3 7.2 0.00016 31.8 11.2 41 101-141 54-96 (171)
70 cd01635 Glycosyltransferase_GT 90.3 2.5 5.4E-05 35.1 9.2 26 18-43 12-37 (229)
71 cd03791 GT1_Glycogen_synthase_ 90.1 4.7 0.0001 38.6 12.0 26 20-45 17-42 (476)
72 PLN02275 transferase, transfer 90.1 10 0.00022 35.1 13.7 122 8-142 6-135 (371)
73 cd03811 GT1_WabH_like This fam 89.6 2 4.3E-05 38.2 8.5 37 11-47 2-40 (353)
74 COG0496 SurE Predicted acid ph 89.4 2.2 4.7E-05 37.0 7.9 102 21-142 12-126 (252)
75 cd04955 GT1_like_6 This family 89.0 6.9 0.00015 35.4 11.8 46 19-68 15-60 (363)
76 COG1703 ArgK Putative periplas 88.5 8.4 0.00018 34.3 11.0 42 6-47 49-90 (323)
77 PRK13932 stationary phase surv 88.5 7.2 0.00016 34.1 10.5 41 6-48 3-43 (257)
78 cd03798 GT1_wlbH_like This fam 86.7 9.1 0.0002 34.2 11.0 30 18-47 13-42 (377)
79 PRK13609 diacylglycerol glucos 85.6 1.2 2.5E-05 41.4 4.5 36 9-44 5-41 (380)
80 PRK05749 3-deoxy-D-manno-octul 85.5 2.3 5.1E-05 40.1 6.6 99 10-141 51-155 (425)
81 cd03795 GT1_like_4 This family 84.4 12 0.00026 33.7 10.6 30 18-47 13-42 (357)
82 cd03786 GT1_UDP-GlcNAc_2-Epime 83.8 4.2 9.1E-05 37.2 7.4 108 17-140 7-119 (363)
83 cd03806 GT1_ALG11_like This fa 83.0 15 0.00032 34.7 10.8 113 20-142 15-138 (419)
84 cd03812 GT1_CapH_like This fam 82.3 6.2 0.00013 35.7 7.8 30 17-46 10-39 (358)
85 PRK13931 stationary phase surv 82.1 12 0.00027 32.7 9.1 98 25-141 16-129 (261)
86 PF08660 Alg14: Oligosaccharid 81.9 12 0.00027 30.5 8.5 35 107-141 87-129 (170)
87 COG3980 spsG Spore coat polysa 81.7 2.5 5.4E-05 37.2 4.5 37 10-46 2-42 (318)
88 cd03822 GT1_ecORF704_like This 80.9 21 0.00046 31.9 10.9 37 10-46 1-40 (366)
89 TIGR00715 precor6x_red precorr 80.7 20 0.00043 31.4 9.9 82 25-141 12-100 (256)
90 PRK13933 stationary phase surv 80.4 14 0.0003 32.3 8.7 23 25-48 16-38 (253)
91 PRK05986 cob(I)alamin adenolsy 79.8 24 0.00051 29.4 9.5 103 7-122 21-125 (191)
92 PRK13934 stationary phase surv 79.0 13 0.00028 32.6 8.1 25 23-48 14-38 (266)
93 TIGR00087 surE 5'/3'-nucleotid 78.6 29 0.00064 30.1 10.2 25 24-49 15-39 (244)
94 PRK02261 methylaspartate mutas 77.8 4.7 0.0001 31.6 4.6 42 7-48 2-43 (137)
95 COG1817 Uncharacterized protei 77.3 17 0.00038 32.5 8.3 106 18-143 9-114 (346)
96 PRK00654 glgA glycogen synthas 76.4 3.8 8.3E-05 39.2 4.6 36 10-45 2-43 (466)
97 cd02067 B12-binding B12 bindin 76.4 4.1 8.8E-05 30.8 3.9 36 10-45 1-36 (119)
98 cd04951 GT1_WbdM_like This fam 75.8 3 6.6E-05 37.7 3.6 28 18-45 11-38 (360)
99 cd03807 GT1_WbnK_like This fam 74.3 31 0.00066 30.6 9.8 30 16-45 9-38 (365)
100 cd03825 GT1_wcfI_like This fam 74.1 4.7 0.0001 36.5 4.4 37 10-46 2-40 (365)
101 PRK00346 surE 5'(3')-nucleotid 74.0 47 0.001 29.0 10.2 26 23-49 14-39 (250)
102 COG1618 Predicted nucleotide k 74.0 41 0.0009 27.3 8.9 40 6-45 3-42 (179)
103 cd03821 GT1_Bme6_like This fam 73.6 5.4 0.00012 35.8 4.7 30 18-47 13-42 (375)
104 PF02951 GSH-S_N: Prokaryotic 73.6 6.9 0.00015 29.8 4.4 37 10-46 2-41 (119)
105 cd03792 GT1_Trehalose_phosphor 73.1 16 0.00034 33.6 7.7 29 17-45 10-38 (372)
106 COG1519 KdtA 3-deoxy-D-manno-o 72.6 22 0.00049 33.2 8.2 100 10-141 50-154 (419)
107 TIGR02095 glgA glycogen/starch 71.1 6.3 0.00014 37.8 4.7 37 10-46 2-44 (473)
108 COG0801 FolK 7,8-dihydro-6-hyd 70.4 10 0.00022 30.6 4.8 36 272-307 3-38 (160)
109 TIGR03568 NeuC_NnaA UDP-N-acet 70.3 28 0.00061 32.2 8.6 120 10-141 2-125 (365)
110 PF08323 Glyco_transf_5: Starc 69.4 7.6 0.00017 33.7 4.4 27 20-46 17-43 (245)
111 TIGR00236 wecB UDP-N-acetylglu 68.8 14 0.00031 33.8 6.4 110 10-139 2-116 (365)
112 COG1435 Tdk Thymidine kinase [ 68.7 54 0.0012 27.4 8.8 38 9-46 4-42 (201)
113 PRK13935 stationary phase surv 68.6 76 0.0017 27.7 10.2 24 24-48 15-38 (253)
114 cd05844 GT1_like_7 Glycosyltra 68.3 58 0.0013 29.4 10.3 38 103-140 73-112 (367)
115 PF02310 B12-binding: B12 bind 66.8 13 0.00028 27.9 4.8 35 10-44 2-36 (121)
116 TIGR03087 stp1 sugar transfera 66.7 6.4 0.00014 36.7 3.6 31 15-46 9-40 (397)
117 cd00561 CobA_CobO_BtuR ATP:cor 65.2 71 0.0015 25.7 9.7 34 10-43 4-37 (159)
118 PF12146 Hydrolase_4: Putative 63.3 20 0.00043 25.0 4.8 33 10-42 17-49 (79)
119 PF02441 Flavoprotein: Flavopr 63.3 14 0.00031 28.4 4.4 36 10-46 2-37 (129)
120 PRK08057 cobalt-precorrin-6x r 63.0 1E+02 0.0022 26.8 10.2 39 102-141 55-100 (248)
121 PF04127 DFP: DNA / pantothena 62.7 8.2 0.00018 32.0 3.1 37 10-46 5-53 (185)
122 cd01840 SGNH_hydrolase_yrhL_li 62.1 12 0.00025 29.6 3.8 39 269-308 50-88 (150)
123 TIGR02370 pyl_corrinoid methyl 62.0 17 0.00037 30.4 4.9 42 7-48 83-124 (197)
124 TIGR02193 heptsyl_trn_I lipopo 61.3 21 0.00045 32.1 5.8 41 10-50 1-43 (319)
125 PF07355 GRDB: Glycine/sarcosi 60.1 21 0.00045 32.6 5.3 47 92-138 60-116 (349)
126 cd02070 corrinoid_protein_B12- 59.1 18 0.00038 30.3 4.6 38 8-45 82-119 (201)
127 PLN02605 monogalactosyldiacylg 58.6 14 0.0003 34.3 4.3 31 12-42 3-36 (382)
128 TIGR02149 glgA_Coryne glycogen 57.6 1.2E+02 0.0025 27.8 10.3 22 23-45 20-41 (388)
129 COG1797 CobB Cobyrinic acid a, 56.4 87 0.0019 29.7 8.8 29 14-42 7-35 (451)
130 PF06925 MGDG_synth: Monogalac 55.7 40 0.00087 27.2 6.1 42 100-141 77-124 (169)
131 COG2874 FlaH Predicted ATPases 54.7 11 0.00025 31.9 2.6 38 11-48 31-68 (235)
132 PF04413 Glycos_transf_N: 3-De 54.6 17 0.00036 30.2 3.6 100 10-141 22-126 (186)
133 PF04244 DPRP: Deoxyribodipyri 52.9 15 0.00033 31.4 3.2 25 21-45 47-71 (224)
134 PRK06321 replicative DNA helic 52.7 45 0.00097 32.1 6.7 38 11-48 229-267 (472)
135 COG3914 Spy Predicted O-linked 52.4 31 0.00068 33.6 5.4 43 268-310 427-469 (620)
136 cd02069 methionine_synthase_B1 52.4 31 0.00066 29.3 5.0 41 7-47 87-127 (213)
137 KOG4626 O-linked N-acetylgluco 52.2 38 0.00083 33.5 5.9 43 268-310 756-798 (966)
138 TIGR01917 gly_red_sel_B glycin 52.1 32 0.00069 32.3 5.3 48 92-139 56-113 (431)
139 TIGR01918 various_sel_PB selen 52.1 32 0.0007 32.3 5.3 48 92-139 56-113 (431)
140 cd03799 GT1_amsK_like This is 52.1 28 0.00061 31.2 5.1 36 11-46 2-38 (355)
141 COG2910 Putative NADH-flavin r 52.0 14 0.0003 30.5 2.6 31 10-45 2-33 (211)
142 cd03412 CbiK_N Anaerobic cobal 52.0 25 0.00055 27.0 4.0 38 270-307 1-40 (127)
143 PRK14099 glycogen synthase; Pr 51.6 25 0.00053 34.0 4.8 39 7-45 2-46 (485)
144 COG0003 ArsA Predicted ATPase 51.3 1E+02 0.0022 28.1 8.3 38 9-46 2-40 (322)
145 PF13844 Glyco_transf_41: Glyc 50.9 35 0.00076 32.7 5.5 43 268-310 282-324 (468)
146 cd02071 MM_CoA_mut_B12_BD meth 50.5 34 0.00073 26.0 4.5 38 10-47 1-38 (122)
147 PLN02316 synthase/transferase 50.4 29 0.00062 36.8 5.2 40 7-46 586-631 (1036)
148 PRK04328 hypothetical protein; 50.3 1.5E+02 0.0034 25.6 9.2 40 10-49 25-64 (249)
149 PRK08305 spoVFB dipicolinate s 48.7 27 0.00058 29.2 3.9 36 10-46 7-43 (196)
150 KOG1209 1-Acyl dihydroxyaceton 48.3 24 0.00052 30.0 3.5 36 1-42 1-38 (289)
151 PRK07773 replicative DNA helic 47.5 49 0.0011 34.7 6.5 39 11-49 220-259 (886)
152 TIGR03088 stp2 sugar transfera 46.8 1.2E+02 0.0025 27.7 8.4 94 19-138 14-108 (374)
153 PF08030 NAD_binding_6: Ferric 46.5 19 0.00041 28.4 2.7 40 271-310 3-47 (156)
154 COG1484 DnaC DNA replication p 46.4 30 0.00064 30.2 4.1 41 9-49 106-146 (254)
155 PF01210 NAD_Gly3P_dh_N: NAD-d 46.3 20 0.00043 28.7 2.8 20 26-45 12-31 (157)
156 TIGR02655 circ_KaiC circadian 44.7 19 0.00041 34.8 2.8 42 10-51 265-306 (484)
157 PLN02939 transferase, transfer 44.6 39 0.00085 35.4 5.1 41 6-46 479-525 (977)
158 TIGR03878 thermo_KaiC_2 KaiC d 44.4 2.2E+02 0.0047 24.9 10.5 38 10-47 38-75 (259)
159 PRK06067 flagellar accessory p 44.2 26 0.00057 29.9 3.4 38 10-47 27-64 (234)
160 PRK13982 bifunctional SbtC-lik 44.0 30 0.00064 33.3 3.9 38 9-46 257-306 (475)
161 PF13450 NAD_binding_8: NAD(P) 43.9 29 0.00064 23.2 2.9 18 26-43 9-26 (68)
162 PF06415 iPGM_N: BPG-independe 43.7 64 0.0014 27.6 5.5 33 6-38 27-61 (223)
163 PRK13604 luxD acyl transferase 43.4 55 0.0012 29.5 5.3 34 9-42 37-70 (307)
164 TIGR03492 conserved hypothetic 43.3 1.5E+02 0.0032 27.8 8.5 35 106-141 85-121 (396)
165 PF08452 DNAP_B_exo_N: DNA pol 42.4 19 0.00041 18.1 1.3 17 259-275 4-20 (22)
166 TIGR02852 spore_dpaB dipicolin 42.2 36 0.00078 28.2 3.7 37 10-46 2-38 (187)
167 PRK03359 putative electron tra 40.5 56 0.0012 28.6 4.8 38 105-142 105-148 (256)
168 PRK14092 2-amino-4-hydroxy-6-h 40.0 46 0.00099 26.9 3.9 32 267-298 4-35 (163)
169 PRK01021 lpxB lipid-A-disaccha 40.0 58 0.0013 32.3 5.3 40 102-141 300-344 (608)
170 COG1066 Sms Predicted ATP-depe 39.7 47 0.001 31.2 4.3 38 11-49 96-133 (456)
171 PRK14098 glycogen synthase; Pr 39.7 50 0.0011 32.0 4.9 38 8-45 5-48 (489)
172 PRK12342 hypothetical protein; 39.0 61 0.0013 28.4 4.8 37 106-142 103-145 (254)
173 COG2185 Sbm Methylmalonyl-CoA 38.7 58 0.0013 25.7 4.1 39 6-44 10-48 (143)
174 TIGR00708 cobA cob(I)alamin ad 38.7 2.2E+02 0.0047 23.3 9.8 36 8-43 5-40 (173)
175 PF00070 Pyr_redox: Pyridine n 38.3 49 0.0011 22.7 3.5 21 25-45 11-31 (80)
176 PF10657 RC-P840_PscD: Photosy 38.0 65 0.0014 24.4 4.1 42 7-48 45-86 (144)
177 TIGR03880 KaiC_arch_3 KaiC dom 38.0 1.7E+02 0.0036 24.6 7.5 40 10-49 18-57 (224)
178 PRK09620 hypothetical protein; 37.5 34 0.00073 29.4 3.0 20 26-45 33-52 (229)
179 PRK06732 phosphopantothenate-- 36.9 38 0.00081 29.1 3.2 19 26-44 30-48 (229)
180 PF06180 CbiK: Cobalt chelatas 36.6 56 0.0012 28.7 4.2 40 270-309 1-43 (262)
181 COG2109 BtuR ATP:corrinoid ade 36.4 2.5E+02 0.0055 23.4 8.6 104 8-123 28-133 (198)
182 KOG1014 17 beta-hydroxysteroid 36.0 34 0.00073 30.7 2.8 19 26-44 63-81 (312)
183 KOG4513 Phosphoglycerate mutas 35.9 63 0.0014 29.8 4.4 38 6-43 122-164 (531)
184 PF02702 KdpD: Osmosensitive K 35.8 98 0.0021 26.1 5.3 42 6-47 3-44 (211)
185 COG0052 RpsB Ribosomal protein 35.6 64 0.0014 28.0 4.2 30 113-142 157-188 (252)
186 TIGR01498 folK 2-amino-4-hydro 35.6 41 0.00089 25.9 2.9 27 273-299 1-27 (127)
187 PRK07313 phosphopantothenoylcy 35.4 53 0.0011 27.1 3.7 37 10-47 3-39 (182)
188 PF09314 DUF1972: Domain of un 35.3 1.1E+02 0.0024 25.3 5.5 40 24-68 22-62 (185)
189 cd01981 Pchlide_reductase_B Pc 35.0 64 0.0014 30.5 4.7 35 104-141 362-396 (430)
190 COG2845 Uncharacterized protei 35.0 37 0.0008 30.6 2.8 52 259-310 167-237 (354)
191 TIGR00421 ubiX_pad polyprenyl 34.8 47 0.001 27.3 3.3 37 11-48 2-38 (181)
192 PLN02211 methyl indole-3-aceta 34.2 1.1E+02 0.0024 26.8 5.9 39 6-45 16-54 (273)
193 PRK00039 ruvC Holliday junctio 34.1 1.2E+02 0.0026 24.5 5.5 48 97-144 46-108 (164)
194 cd03409 Chelatase_Class_II Cla 33.8 1.1E+02 0.0023 21.9 4.9 36 272-307 2-40 (101)
195 PF05762 VWA_CoxE: VWA domain 33.5 92 0.002 26.5 5.1 38 8-45 150-188 (222)
196 COG0300 DltE Short-chain dehyd 33.3 43 0.00093 29.5 3.0 19 26-44 20-38 (265)
197 cd01452 VWA_26S_proteasome_sub 33.3 1.5E+02 0.0032 24.6 6.0 35 10-44 110-144 (187)
198 COG0162 TyrS Tyrosyl-tRNA synt 32.8 51 0.0011 30.9 3.5 39 8-47 34-75 (401)
199 CHL00076 chlB photochlorophyll 31.9 78 0.0017 30.9 4.8 34 104-140 366-399 (513)
200 PF12146 Hydrolase_4: Putative 31.3 1.1E+02 0.0024 21.1 4.3 42 260-303 6-47 (79)
201 PF05728 UPF0227: Uncharacteri 30.6 1E+02 0.0023 25.4 4.7 43 102-144 47-92 (187)
202 KOG2825 Putative arsenite-tran 30.5 1.2E+02 0.0027 26.6 5.1 42 6-47 16-58 (323)
203 TIGR02699 archaeo_AfpA archaeo 30.4 72 0.0016 26.1 3.6 28 20-47 10-39 (174)
204 PRK05920 aromatic acid decarbo 30.2 80 0.0017 26.6 4.0 37 9-46 4-40 (204)
205 PRK06835 DNA replication prote 30.1 74 0.0016 29.0 4.1 38 9-46 184-221 (329)
206 TIGR01007 eps_fam capsular exo 29.5 1.1E+02 0.0023 25.4 4.7 37 9-45 17-55 (204)
207 PF07302 AroM: AroM protein; 29.5 82 0.0018 26.9 3.9 34 109-142 175-211 (221)
208 PF00185 OTCace: Aspartate/orn 29.4 1.3E+02 0.0029 24.0 5.1 36 8-46 2-37 (158)
209 TIGR01278 DPOR_BchB light-inde 29.2 88 0.0019 30.5 4.7 36 103-141 355-390 (511)
210 PF12695 Abhydrolase_5: Alpha/ 28.9 1.5E+02 0.0033 22.2 5.3 31 13-43 3-33 (145)
211 cd02034 CooC The accessory pro 28.9 1.3E+02 0.0029 22.5 4.7 37 10-46 1-37 (116)
212 cd03416 CbiX_SirB_N Sirohydroc 28.8 1E+02 0.0022 22.2 4.0 35 271-305 1-37 (101)
213 PRK13608 diacylglycerol glucos 28.7 87 0.0019 29.1 4.5 33 10-42 7-43 (391)
214 PRK02910 light-independent pro 28.7 94 0.002 30.4 4.8 35 103-140 353-387 (519)
215 TIGR00064 ftsY signal recognit 28.7 1.6E+02 0.0036 25.9 5.9 38 10-47 74-111 (272)
216 PRK04940 hypothetical protein; 28.4 1.4E+02 0.0031 24.6 5.0 33 112-144 60-93 (180)
217 PRK15179 Vi polysaccharide bio 28.2 6.6E+02 0.014 25.7 10.8 39 101-139 389-429 (694)
218 PLN00016 RNA-binding protein; 28.1 82 0.0018 29.1 4.2 37 9-45 53-89 (378)
219 cd01141 TroA_d Periplasmic bin 28.0 1E+02 0.0022 24.9 4.4 38 102-140 60-99 (186)
220 cd01965 Nitrogenase_MoFe_beta_ 27.6 1E+02 0.0022 29.2 4.7 34 104-140 363-396 (428)
221 COG4088 Predicted nucleotide k 27.4 75 0.0016 27.0 3.3 34 11-44 4-37 (261)
222 PF14626 RNase_Zc3h12a_2: Zc3h 27.3 67 0.0014 24.4 2.7 28 23-50 10-37 (122)
223 COG2210 Peroxiredoxin family p 27.2 1.5E+02 0.0032 23.2 4.7 31 15-45 10-40 (137)
224 cd01976 Nitrogenase_MoFe_alpha 27.1 85 0.0019 29.7 4.1 34 103-139 360-393 (421)
225 COG1255 Uncharacterized protei 27.0 71 0.0015 24.2 2.7 19 24-42 24-42 (129)
226 PF01738 DLH: Dienelactone hyd 27.0 1.3E+02 0.0029 25.0 5.0 34 8-42 14-47 (218)
227 cd00483 HPPK 7,8-dihydro-6-hyd 26.8 70 0.0015 24.6 2.9 27 273-299 1-27 (128)
228 COG0745 OmpR Response regulato 26.8 1.2E+02 0.0027 25.9 4.7 36 106-142 38-81 (229)
229 PLN02949 transferase, transfer 26.8 5.8E+02 0.012 24.5 12.8 126 7-144 32-171 (463)
230 cd02065 B12-binding_like B12 b 26.7 1.2E+02 0.0026 22.5 4.3 34 11-44 2-35 (125)
231 PF05724 TPMT: Thiopurine S-me 26.7 79 0.0017 26.9 3.5 26 11-42 40-65 (218)
232 PF13167 GTP-bdg_N: GTP-bindin 26.6 1.5E+02 0.0033 21.5 4.4 35 103-137 48-84 (95)
233 TIGR02114 coaB_strep phosphopa 26.5 63 0.0014 27.6 2.9 18 26-43 29-46 (227)
234 TIGR00234 tyrS tyrosyl-tRNA sy 26.4 62 0.0013 30.2 3.0 38 9-47 33-73 (377)
235 PRK00923 sirohydrochlorin coba 26.0 1.5E+02 0.0032 22.5 4.6 36 270-305 2-39 (126)
236 PF13460 NAD_binding_10: NADH( 25.9 72 0.0016 25.6 3.1 20 26-45 12-31 (183)
237 KOG2585 Uncharacterized conser 25.8 1.3E+02 0.0028 28.5 4.8 37 6-45 264-302 (453)
238 COG0467 RAD55 RecA-superfamily 25.7 1.3E+02 0.0029 26.0 4.8 42 10-51 25-66 (260)
239 PRK06249 2-dehydropantoate 2-r 25.6 96 0.0021 27.9 4.0 33 8-45 5-37 (313)
240 cd01983 Fer4_NifH The Fer4_Nif 25.6 1.7E+02 0.0037 20.0 4.7 33 11-43 2-34 (99)
241 PF11609 DUF3248: Protein of u 25.5 78 0.0017 20.7 2.3 16 295-310 1-16 (63)
242 cd03466 Nitrogenase_NifN_2 Nit 25.5 1.2E+02 0.0026 28.7 4.8 33 104-139 364-396 (429)
243 PF03853 YjeF_N: YjeF-related 25.5 78 0.0017 25.6 3.1 38 6-44 23-60 (169)
244 PRK15411 rcsA colanic acid cap 25.4 1.6E+02 0.0035 24.6 5.1 36 107-142 42-86 (207)
245 PRK04155 chaperone protein Hch 25.4 2E+02 0.0043 25.7 5.9 21 25-45 79-99 (287)
246 PRK13609 diacylglycerol glucos 25.3 1E+02 0.0023 28.3 4.3 39 102-140 94-134 (380)
247 COG2099 CobK Precorrin-6x redu 25.3 1.4E+02 0.003 26.1 4.6 38 102-140 56-100 (257)
248 TIGR02113 coaC_strep phosphopa 25.3 96 0.0021 25.4 3.6 36 10-46 2-37 (177)
249 PRK10422 lipopolysaccharide co 25.2 1.1E+02 0.0025 27.8 4.5 41 9-49 6-48 (352)
250 PF03308 ArgK: ArgK protein; 25.2 1.6E+02 0.0035 25.9 5.1 41 6-46 27-67 (266)
251 TIGR00640 acid_CoA_mut_C methy 25.1 92 0.002 24.1 3.3 38 7-44 52-90 (132)
252 PRK06849 hypothetical protein; 25.1 1.4E+02 0.0031 27.6 5.2 34 8-45 4-37 (389)
253 TIGR01425 SRP54_euk signal rec 25.0 1.7E+02 0.0037 27.9 5.6 40 9-48 101-140 (429)
254 PF01695 IstB_IS21: IstB-like 25.0 1.6E+02 0.0036 23.9 5.0 39 8-46 47-85 (178)
255 PF07015 VirC1: VirC1 protein; 24.8 1.9E+02 0.0042 24.9 5.4 38 11-48 4-42 (231)
256 COG3349 Uncharacterized conser 24.8 60 0.0013 31.2 2.6 19 26-44 13-31 (485)
257 PF03720 UDPG_MGDP_dh_C: UDP-g 24.8 93 0.002 22.9 3.2 22 23-44 17-38 (106)
258 PF02558 ApbA: Ketopantoate re 24.6 73 0.0016 24.8 2.8 20 27-46 12-31 (151)
259 KOG1838 Alpha/beta hydrolase [ 24.4 1.6E+02 0.0034 27.8 5.1 38 7-44 124-162 (409)
260 cd03809 GT1_mtfB_like This fam 24.3 1.1E+02 0.0024 27.1 4.3 29 19-47 15-43 (365)
261 PRK00771 signal recognition pa 24.2 1.9E+02 0.0042 27.6 5.8 40 9-48 96-135 (437)
262 KOG0541 Alkyl hydroperoxide re 24.0 88 0.0019 25.1 2.9 31 15-45 57-88 (171)
263 PF01380 SIS: SIS domain SIS d 24.0 1.6E+02 0.0035 21.9 4.6 30 18-47 62-91 (131)
264 COG2120 Uncharacterized protei 23.9 1.5E+02 0.0032 25.6 4.7 37 7-44 9-46 (237)
265 PF03403 PAF-AH_p_II: Platelet 23.7 1E+02 0.0022 28.7 3.9 36 7-42 98-133 (379)
266 PF00072 Response_reg: Respons 23.6 1.5E+02 0.0033 21.0 4.3 40 103-142 34-80 (112)
267 PRK09361 radB DNA repair and r 23.5 1.7E+02 0.0038 24.5 5.1 35 11-45 26-60 (225)
268 PRK03094 hypothetical protein; 23.4 78 0.0017 22.2 2.2 20 25-44 10-29 (80)
269 COG0569 TrkA K+ transport syst 23.1 74 0.0016 27.2 2.6 20 26-45 13-32 (225)
270 KOG2941 Beta-1,4-mannosyltrans 23.1 6.1E+02 0.013 23.5 11.1 60 6-68 10-69 (444)
271 PRK04148 hypothetical protein; 23.0 86 0.0019 24.5 2.7 29 9-43 18-46 (134)
272 cd03414 CbiX_SirB_C Sirohydroc 23.0 83 0.0018 23.4 2.7 35 271-305 2-38 (117)
273 COG1090 Predicted nucleoside-d 22.9 85 0.0018 27.9 2.9 22 26-47 12-33 (297)
274 PF02684 LpxB: Lipid-A-disacch 22.9 1.8E+02 0.0039 27.1 5.2 40 101-140 71-115 (373)
275 COG2085 Predicted dinucleotide 22.6 82 0.0018 26.6 2.7 21 26-46 14-34 (211)
276 PRK14478 nitrogenase molybdenu 22.4 1.1E+02 0.0025 29.4 4.1 27 108-137 389-415 (475)
277 COG0503 Apt Adenine/guanine ph 22.3 2.5E+02 0.0054 23.0 5.5 37 103-139 44-82 (179)
278 PF02571 CbiJ: Precorrin-6x re 22.3 1.6E+02 0.0034 25.7 4.6 39 102-141 56-101 (249)
279 PRK07414 cob(I)yrinic acid a,c 22.2 4.5E+02 0.0097 21.6 7.8 37 8-44 21-57 (178)
280 cd03115 SRP The signal recogni 22.2 2.2E+02 0.0048 22.7 5.2 37 11-47 3-39 (173)
281 PRK06029 3-octaprenyl-4-hydrox 22.1 1.3E+02 0.0027 24.9 3.7 37 10-47 3-40 (185)
282 TIGR00745 apbA_panE 2-dehydrop 22.1 70 0.0015 28.1 2.4 19 27-45 5-23 (293)
283 PRK06719 precorrin-2 dehydroge 22.1 99 0.0021 24.7 3.0 31 10-45 15-45 (157)
284 PF05818 TraT: Enterobacterial 21.9 1.5E+02 0.0034 25.1 4.2 41 263-303 13-54 (215)
285 PF03796 DnaB_C: DnaB-like hel 21.9 1.8E+02 0.0039 25.1 5.0 39 11-49 22-61 (259)
286 COG2894 MinD Septum formation 21.9 1.7E+02 0.0037 25.2 4.4 37 10-46 3-41 (272)
287 cd06559 Endonuclease_V Endonuc 21.9 1.1E+02 0.0025 25.7 3.5 39 104-142 83-130 (208)
288 PRK10239 2-amino-4-hydroxy-6-h 21.8 1.1E+02 0.0023 24.7 3.2 27 272-298 3-29 (159)
289 TIGR00176 mobB molybdopterin-g 21.8 1.9E+02 0.004 23.0 4.6 35 11-45 2-36 (155)
290 PRK06242 flavodoxin; Provision 21.6 1E+02 0.0022 23.9 3.1 60 237-303 46-106 (150)
291 TIGR00730 conserved hypothetic 21.6 1.6E+02 0.0035 24.1 4.3 34 10-43 2-39 (178)
292 PF03205 MobB: Molybdopterin g 21.5 2E+02 0.0043 22.4 4.6 34 10-43 2-35 (140)
293 KOG3062 RNA polymerase II elon 21.5 1.8E+02 0.0039 25.2 4.4 28 11-38 4-31 (281)
294 PRK14089 ipid-A-disaccharide s 21.5 3E+02 0.0065 25.3 6.4 31 111-141 75-110 (347)
295 PF09140 MipZ: ATPase MipZ; I 21.3 1.6E+02 0.0035 25.8 4.2 37 10-46 1-39 (261)
296 PF04493 Endonuclease_5: Endon 21.2 1.6E+02 0.0035 24.8 4.2 39 104-142 79-126 (206)
297 PRK09219 xanthine phosphoribos 21.1 2.1E+02 0.0046 23.7 4.9 39 103-141 41-81 (189)
298 TIGR01286 nifK nitrogenase mol 21.0 1.5E+02 0.0033 28.9 4.6 35 8-43 220-254 (515)
299 cd00861 ProRS_anticodon_short 21.0 2E+02 0.0043 20.1 4.3 34 10-43 3-38 (94)
300 KOG1344 Predicted histone deac 21.0 3.2E+02 0.0068 23.6 5.8 18 127-144 285-302 (324)
301 PF01266 DAO: FAD dependent ox 21.0 89 0.0019 28.0 2.9 20 26-45 12-31 (358)
302 cd01980 Chlide_reductase_Y Chl 20.8 1.6E+02 0.0035 27.8 4.6 30 108-140 346-375 (416)
303 TIGR01744 XPRTase xanthine pho 20.8 2.3E+02 0.005 23.5 5.0 38 104-141 42-81 (191)
304 PF01012 ETF: Electron transfe 20.7 1.4E+02 0.003 23.8 3.7 41 101-141 79-122 (164)
305 PF03698 UPF0180: Uncharacteri 20.7 91 0.002 21.9 2.2 22 24-45 9-30 (80)
306 TIGR01358 DAHP_synth_II 3-deox 20.7 1.9E+02 0.0041 27.4 4.8 77 221-309 266-347 (443)
307 TIGR01012 Sa_S2_E_A ribosomal 20.6 1.4E+02 0.0031 25.0 3.7 31 112-142 108-140 (196)
308 cd01974 Nitrogenase_MoFe_beta 20.6 1.8E+02 0.0039 27.6 5.0 18 25-42 176-193 (435)
309 TIGR01285 nifN nitrogenase mol 20.6 1.8E+02 0.0038 27.7 4.9 34 9-43 168-201 (432)
310 PF00391 PEP-utilizers: PEP-ut 20.6 1.2E+02 0.0025 21.0 2.8 30 112-141 30-61 (80)
311 cd01832 SGNH_hydrolase_like_1 20.6 2E+02 0.0042 23.0 4.7 34 272-305 70-111 (185)
312 TIGR02700 flavo_MJ0208 archaeo 20.5 1.5E+02 0.0032 25.5 4.0 32 17-48 7-41 (234)
313 PF02350 Epimerase_2: UDP-N-ac 20.3 1.9E+02 0.0041 26.5 4.9 43 268-310 178-225 (346)
314 PF02844 GARS_N: Phosphoribosy 20.3 1.7E+02 0.0036 21.5 3.6 37 102-138 52-91 (100)
315 PRK14974 cell division protein 20.2 2.8E+02 0.006 25.4 5.8 39 9-47 141-179 (336)
316 COG1036 Archaeal flavoproteins 20.2 2.3E+02 0.005 23.0 4.5 44 1-45 1-47 (187)
317 cd01018 ZntC Metal binding pro 20.0 2.2E+02 0.0048 24.8 5.1 38 105-142 210-249 (266)
318 TIGR00315 cdhB CO dehydrogenas 20.0 94 0.002 25.1 2.5 48 257-308 17-64 (162)
No 1
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=3.9e-50 Score=375.91 Aligned_cols=328 Identities=47% Similarity=0.909 Sum_probs=230.7
Q ss_pred CceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCC
Q 019759 7 QKLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELP 86 (336)
Q Consensus 7 ~~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 86 (336)
.+.||+++|+|++||++||++||+.|+.||+.|||++++.+..++.+......+.|+++.+|+|..+++|.+.+...+..
T Consensus 5 ~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~~~~~~~~~~ 84 (472)
T PLN02670 5 EVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSSAESSTDVP 84 (472)
T ss_pred CCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCCCcccccccc
Confidence 45799999999999999999999999999999999999876544442211112369999999887678876654332222
Q ss_pred CCchHHHHHHHHHhhHHHHHhhhhcCCcEEEEcCCCcchHHHHHHcCCceEEEeccchHHHhhcCCCCccc--cCCCCCC
Q 019759 87 IHKVPYLKKAHDLLQLPLTNFLQDSRVNWIIHDFISHWLPPVAAQLGVNSVFFSIYSAATLCFTGPPSDVI--AGRRQKP 164 (336)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~ll~~~~~D~vv~D~~~~~~~~vA~~~~iP~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 164 (336)
.....++......+.+.+++++++.+++|||+|.|++|+.++|+++|||++.|+++++..++.+++..... +..+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~ 164 (472)
T PLN02670 85 YTKQQLLKKAFDLLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGGDLRSTA 164 (472)
T ss_pred hhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcccCCCcc
Confidence 11123455566667888999988778999999999999999999999999999999988877765332111 1111111
Q ss_pred CCcccCCccccCCCccccccccc-cccccC--CCCchhHHHHHHHHhcCceEEEEccchhchHhHHHHHHhhhCCCeeee
Q 019759 165 EDFTVVPEWIDFQSNLAFKPYET-LINQDG--MDDSVSDYLRAAFVLQDCRVVILRSCAEFEPDALRLLGKMLQKPVLPV 241 (336)
Q Consensus 165 ~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~nt~~~le~~~~~~l~~~~~p~v~~V 241 (336)
......+..+|.+..+.++..++ +++... .......+.+......+++++++|||++||+++++.+++..+++++.|
T Consensus 165 ~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~~~~~v~~V 244 (472)
T PLN02670 165 EDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSDLYRKPIIPI 244 (472)
T ss_pred ccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHHhhCCCeEEE
Confidence 11100111223221122333455 444221 111223333333445678999999999999999999987555679999
Q ss_pred eeccCCC-C-CCCC-C--CCccccccccccCCCCeEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCC
Q 019759 242 GLLAPSL-Q-DSAA-G--EHWPVLKDWLDSKENNSVVYAAFGTEMTLSQELLHELAYGLEKSGLPFIWIIKNRPLVEGES 316 (336)
Q Consensus 242 Gpl~~~~-~-~~~~-~--~~~~~l~~wLd~~~~~~VVyvSfGS~~~~~~~~~~~ia~al~~~~~~~lW~~r~~~~~~~~~ 316 (336)
||+++.. . .... . .++++|.+|||+++++|||||||||+..++.+|++||+.||++++++|||++|++... .+
T Consensus 245 GPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~~--~~ 322 (472)
T PLN02670 245 GFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPGT--TQ 322 (472)
T ss_pred ecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccc--cc
Confidence 9997631 1 0100 0 1125799999999889999999999999999999999999999999999999975311 11
Q ss_pred CccCCCChhHHHhhcCCCCC
Q 019759 317 GLDHLLPPGFQDRVSGTGLV 336 (336)
Q Consensus 317 ~~~~~~~~~~~~~~~~~g~v 336 (336)
+....+|++|.+|++++|+|
T Consensus 323 ~~~~~lp~~f~~~~~~rG~v 342 (472)
T PLN02670 323 NALEMLPDGFEERVKGRGMI 342 (472)
T ss_pred chhhcCChHHHHhccCCCeE
Confidence 12347999999999999975
No 2
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=3.6e-49 Score=368.64 Aligned_cols=310 Identities=30% Similarity=0.564 Sum_probs=224.4
Q ss_pred CceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCC
Q 019759 7 QKLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELP 86 (336)
Q Consensus 7 ~~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 86 (336)
.+.||+++|+|++||+|||++||+.|++||++|||++++.+..++.+.. ...+.+++..+++|..+++|.+.+...++.
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~-~~~~~i~~~~i~lP~~dGLP~g~e~~~~l~ 81 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLN-LFPDSIVFEPLTLPPVDGLPFGAETASDLP 81 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccc-cCCCceEEEEecCCCcCCCCCcccccccch
Confidence 3479999999999999999999999999999999999987655554321 112358887777766578877654333332
Q ss_pred CCchHHHHHHHHHhhHHHHHhhhhcCCcEEEEcCCCcchHHHHHHcCCceEEEeccchHHHhhcCCCCccccCCCCCCCC
Q 019759 87 IHKVPYLKKAHDLLQLPLTNFLQDSRVNWIIHDFISHWLPPVAAQLGVNSVFFSIYSAATLCFTGPPSDVIAGRRQKPED 166 (336)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~ll~~~~~D~vv~D~~~~~~~~vA~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (336)
..+...+......+.+.+++++++.++||||+|. ++|+.++|+++|||++.||++++++++.+++. .. . .+
T Consensus 82 ~~~~~~~~~a~~~l~~~l~~~L~~~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~-~~--~-----~~ 152 (446)
T PLN00414 82 NSTKKPIFDAMDLLRDQIEAKVRALKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAP-RA--E-----LG 152 (446)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCc-Hh--h-----cC
Confidence 2223345556666778888888777889999995 89999999999999999999999888776652 10 0 00
Q ss_pred cccCCccccCCCcccccccc--c-cccccCCCCchhHHHHHHHHhcCceEEEEccchhchHhHHHHHHhhhCCCeeeeee
Q 019759 167 FTVVPEWIDFQSNLAFKPYE--T-LINQDGMDDSVSDYLRAAFVLQDCRVVILRSCAEFEPDALRLLGKMLQKPVLPVGL 243 (336)
Q Consensus 167 ~~~~~~~~p~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~~le~~~~~~l~~~~~p~v~~VGp 243 (336)
.+.+++|... +.++..+ + .++. .....+.+......+++++++|||++||+.+++.+++..+++|+.|||
T Consensus 153 --~~~pg~p~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGP 225 (446)
T PLN00414 153 --FPPPDYPLSK-VALRGHDANVCSLFA----NSHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVLLTGP 225 (446)
T ss_pred --CCCCCCCCCc-CcCchhhcccchhhc----ccHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCeEEEcc
Confidence 1122333211 1121111 1 1221 111233344455667999999999999999999998755567999999
Q ss_pred ccCCCCCCCCCCCccccccccccCCCCeEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCccCCCC
Q 019759 244 LAPSLQDSAAGEHWPVLKDWLDSKENNSVVYAAFGTEMTLSQELLHELAYGLEKSGLPFIWIIKNRPLVEGESGLDHLLP 323 (336)
Q Consensus 244 l~~~~~~~~~~~~~~~l~~wLd~~~~~~VVyvSfGS~~~~~~~~~~~ia~al~~~~~~~lW~~r~~~~~~~~~~~~~~~~ 323 (336)
+++..........+++|.+|||+|+++|||||||||..+++.+|+.|++.||+.+|++|||++|.+. +.++..+.+|
T Consensus 226 l~~~~~~~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~---~~~~~~~~lp 302 (446)
T PLN00414 226 MLPEPQNKSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPK---GSSTVQEALP 302 (446)
T ss_pred cCCCcccccCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCC---CcccchhhCC
Confidence 9764321100112357999999999999999999999999999999999999999999999999753 1111235799
Q ss_pred hhHHHhhcCCCCC
Q 019759 324 PGFQDRVSGTGLV 336 (336)
Q Consensus 324 ~~~~~~~~~~g~v 336 (336)
+||++|++++|+|
T Consensus 303 ~~f~~r~~~~g~v 315 (446)
T PLN00414 303 EGFEERVKGRGIV 315 (446)
T ss_pred hhHHHHhcCCCeE
Confidence 9999999999986
No 3
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=2.1e-48 Score=361.53 Aligned_cols=310 Identities=29% Similarity=0.525 Sum_probs=222.0
Q ss_pred CceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCC--eEEEecCCCCCCCCCCCCCCCCC
Q 019759 7 QKLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSR--LSYIQLPLPQLDGLPEGAESTAE 84 (336)
Q Consensus 7 ~~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~ 84 (336)
.+.||+++|+|++||++||++||+.|+.||+.|||++++.+..++.+. .....+ +++..+| ..+++|.+.+...+
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~-~~~~~~~~v~~~~~p--~~~glp~g~e~~~~ 80 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL-NLFPHNIVFRSVTVP--HVDGLPVGTETVSE 80 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc-ccCCCCceEEEEECC--CcCCCCCccccccc
Confidence 358999999999999999999999999999999999998765444332 111113 4454454 33577766554333
Q ss_pred CCCCchHHHHHHHHHhhHHHHHhhhhcCCcEEEEcCCCcchHHHHHHcCCceEEEeccchHHHhhcCCCCccccCCCCCC
Q 019759 85 LPIHKVPYLKKAHDLLQLPLTNFLQDSRVNWIIHDFISHWLPPVAAQLGVNSVFFSIYSAATLCFTGPPSDVIAGRRQKP 164 (336)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~vv~D~~~~~~~~vA~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (336)
........+..+...+.+.+++++++.++||||+|. .+|+.++|+++|||++.||++++++++.++. +. +.
T Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~--~~----- 151 (453)
T PLN02764 81 IPVTSADLLMSAMDLTRDQVEVVVRAVEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PG--GE----- 151 (453)
T ss_pred CChhHHHHHHHHHHHhHHHHHHHHHhCCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-cc--cc-----
Confidence 332223445566666788899999877789999995 8999999999999999999999988877653 11 00
Q ss_pred CCcccCCccccCCCccccccccc-cccc--cCC--CCchhHHHHHHHHhcCceEEEEccchhchHhHHHHHHhhhCCCee
Q 019759 165 EDFTVVPEWIDFQSNLAFKPYET-LINQ--DGM--DDSVSDYLRAAFVLQDCRVVILRSCAEFEPDALRLLGKMLQKPVL 239 (336)
Q Consensus 165 ~~~~~~~~~~p~~~~~~~~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~~~~l~nt~~~le~~~~~~l~~~~~p~v~ 239 (336)
...+.+++|.. .+.++.+++ .+.. ..+ .........+.....+++++++|||++||+++++.+++..+++++
T Consensus 152 --~~~~~pglp~~-~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~~~v~ 228 (453)
T PLN02764 152 --LGVPPPGYPSS-KVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHCRKKVL 228 (453)
T ss_pred --CCCCCCCCCCC-cccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhcCCcEE
Confidence 00112233321 112333333 2211 101 111133334435567789999999999999999999774446799
Q ss_pred eeeeccCCCCCCCCCCCccccccccccCCCCeEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCcc
Q 019759 240 PVGLLAPSLQDSAAGEHWPVLKDWLDSKENNSVVYAAFGTEMTLSQELLHELAYGLEKSGLPFIWIIKNRPLVEGESGLD 319 (336)
Q Consensus 240 ~VGpl~~~~~~~~~~~~~~~l~~wLd~~~~~~VVyvSfGS~~~~~~~~~~~ia~al~~~~~~~lW~~r~~~~~~~~~~~~ 319 (336)
.|||+++... . ....+++|.+|||+|+++|||||||||+..++.+|+.|++.||+.++++|+|++|++. +++...
T Consensus 229 ~VGPL~~~~~-~-~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~---~~~~~~ 303 (453)
T PLN02764 229 LTGPVFPEPD-K-TRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPR---GSSTIQ 303 (453)
T ss_pred EeccCccCcc-c-cccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCC---CCcchh
Confidence 9999976431 1 1122468999999999999999999999999999999999999999999999999753 221123
Q ss_pred CCCChhHHHhhcCCCCC
Q 019759 320 HLLPPGFQDRVSGTGLV 336 (336)
Q Consensus 320 ~~~~~~~~~~~~~~g~v 336 (336)
..+|++|++|++++|+|
T Consensus 304 ~~lp~~f~~r~~grG~v 320 (453)
T PLN02764 304 EALPEGFEERVKGRGVV 320 (453)
T ss_pred hhCCcchHhhhccCCcE
Confidence 57999999999999975
No 4
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=9.6e-48 Score=361.91 Aligned_cols=325 Identities=27% Similarity=0.408 Sum_probs=232.1
Q ss_pred CCceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCC
Q 019759 6 RQKLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAEL 85 (336)
Q Consensus 6 ~~~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 85 (336)
..+.||+++|+|++||++||++||+.|+.+|+.|||++++.+.+++.+...+ .++++++.+|+|..+++|.|.++..+.
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~-~~~i~~~~lp~P~~~~lPdG~~~~~~~ 85 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSK-HPSIETLVLPFPSHPSIPSGVENVKDL 85 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhccc-CCCeeEEeCCCCCcCCCCCCCcChhhc
Confidence 5578999999999999999999999999999999999998776555433211 136888889887667888777654443
Q ss_pred CCCchHHHHHHHHHhhHHHHHhhhh--cCCcEEEEcCCCcchHHHHHHcCCceEEEeccchHHHhhcCCCCccccCCC-C
Q 019759 86 PIHKVPYLKKAHDLLQLPLTNFLQD--SRVNWIIHDFISHWLPPVAAQLGVNSVFFSIYSAATLCFTGPPSDVIAGRR-Q 162 (336)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~ll~~--~~~D~vv~D~~~~~~~~vA~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~-~ 162 (336)
.......+......+.+.+++++++ .+++|||+|.|++|+.++|+++|||.+.||++++++++.+++.+....... .
T Consensus 86 ~~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~~~~~ 165 (477)
T PLN02863 86 PPSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPTKINP 165 (477)
T ss_pred chhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcccccccc
Confidence 3333445555666677778877776 357999999999999999999999999999999998888776542211100 0
Q ss_pred CCCCcccCCccccCCCccccccccc-cccccC--CCCchhHHHHHHHHhcCceEEEEccchhchHhHHHHHHhhhC-CCe
Q 019759 163 KPEDFTVVPEWIDFQSNLAFKPYET-LINQDG--MDDSVSDYLRAAFVLQDCRVVILRSCAEFEPDALRLLGKMLQ-KPV 238 (336)
Q Consensus 163 ~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~nt~~~le~~~~~~l~~~~~-p~v 238 (336)
...........+|+. ..++.+++ .+++.. .......+.+......+++++++|||++||+++++.+++.++ +++
T Consensus 166 ~~~~~~~~~~~iPg~--~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~v 243 (477)
T PLN02863 166 DDQNEILSFSKIPNC--PKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKELGHDRV 243 (477)
T ss_pred cccccccccCCCCCC--CCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhhcCCCCe
Confidence 000001111234421 23444454 333321 111223333333334567889999999999999999987554 679
Q ss_pred eeeeeccCCCCCC-------CCC-CCccccccccccCCCCeEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEeCCC
Q 019759 239 LPVGLLAPSLQDS-------AAG-EHWPVLKDWLDSKENNSVVYAAFGTEMTLSQELLHELAYGLEKSGLPFIWIIKNRP 310 (336)
Q Consensus 239 ~~VGpl~~~~~~~-------~~~-~~~~~l~~wLd~~~~~~VVyvSfGS~~~~~~~~~~~ia~al~~~~~~~lW~~r~~~ 310 (336)
+.|||+++..... ... ..+++|.+|||+++++|||||||||+..++.+|+++|+.||+++|++|||++|++.
T Consensus 244 ~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~ 323 (477)
T PLN02863 244 WAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPV 323 (477)
T ss_pred EEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCc
Confidence 9999997532100 000 12457999999999999999999999999999999999999999999999999653
Q ss_pred CCCCCCCccCCCChhHHHhhcCCCCC
Q 019759 311 LVEGESGLDHLLPPGFQDRVSGTGLV 336 (336)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~g~v 336 (336)
+.+.....+|++|.+|++++|++
T Consensus 324 ---~~~~~~~~lp~~~~~r~~~~g~~ 346 (477)
T PLN02863 324 ---NEESDYSNIPSGFEDRVAGRGLV 346 (477)
T ss_pred ---ccccchhhCCHHHHHHhccCCEE
Confidence 11112346899999999988864
No 5
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=2.5e-47 Score=355.94 Aligned_cols=310 Identities=29% Similarity=0.527 Sum_probs=224.4
Q ss_pred CceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCC
Q 019759 7 QKLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELP 86 (336)
Q Consensus 7 ~~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 86 (336)
+++||+++|+|++||++||++||+.|++|||+|||+|++....++.+.. .....+++..++++..++++.+.+....+.
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~-a~~~~i~~~~l~~p~~dgLp~g~~~~~~l~ 81 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHN-LFPDSIVFHPLTIPPVNGLPAGAETTSDIP 81 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhccc-CCCCceEEEEeCCCCccCCCCCcccccchh
Confidence 4589999999999999999999999999999999999876655544321 112357788777654457776654322222
Q ss_pred CCchHHHHHHHHHhhHHHHHhhhhcCCcEEEEcCCCcchHHHHHHcCCceEEEeccchHHHhhcCCCCccccCCCCCCCC
Q 019759 87 IHKVPYLKKAHDLLQLPLTNFLQDSRVNWIIHDFISHWLPPVAAQLGVNSVFFSIYSAATLCFTGPPSDVIAGRRQKPED 166 (336)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~ll~~~~~D~vv~D~~~~~~~~vA~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (336)
..+...+....+.+.+.+++++++.++||||+| ++.|+.++|+++|||++.||++++.+++ +++.+. +. .+
T Consensus 82 ~~l~~~~~~~~~~~~~~l~~~L~~~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~--~~-----~~ 152 (442)
T PLN02208 82 ISMDNLLSEALDLTRDQVEAAVRALRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG--GK-----LG 152 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc--cc-----cC
Confidence 223344555566678889998888889999999 6899999999999999999999988765 443321 00 00
Q ss_pred cccCCccccCCCccccccccc-cccccCCCCchhHHH-HHHHHhcCceEEEEccchhchHhHHHHHHhhhCCCeeeeeec
Q 019759 167 FTVVPEWIDFQSNLAFKPYET-LINQDGMDDSVSDYL-RAAFVLQDCRVVILRSCAEFEPDALRLLGKMLQKPVLPVGLL 244 (336)
Q Consensus 167 ~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~nt~~~le~~~~~~l~~~~~p~v~~VGpl 244 (336)
.+.+++|.. .+.++..++ .+ . .....+..+. .+.....+++++++|||++||+++++.+++..++++++|||+
T Consensus 153 --~~~pglp~~-~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~vGpl 227 (442)
T PLN02208 153 --VPPPGYPSS-KVLFRENDAHAL-A-TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLTGPM 227 (442)
T ss_pred --CCCCCCCCc-ccccCHHHcCcc-c-ccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEEeec
Confidence 112333321 112333333 22 1 1111222222 222345679999999999999999999988767899999999
Q ss_pred cCCCCCCCCCCCccccccccccCCCCeEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCccCCCCh
Q 019759 245 APSLQDSAAGEHWPVLKDWLDSKENNSVVYAAFGTEMTLSQELLHELAYGLEKSGLPFIWIIKNRPLVEGESGLDHLLPP 324 (336)
Q Consensus 245 ~~~~~~~~~~~~~~~l~~wLd~~~~~~VVyvSfGS~~~~~~~~~~~ia~al~~~~~~~lW~~r~~~~~~~~~~~~~~~~~ 324 (336)
++... . ..+++++|.+|||+|+++|||||||||+.+++.+|+.+++.+|+.++++|+|+||.+. +.++....+|+
T Consensus 228 ~~~~~-~-~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~---~~~~~~~~lp~ 302 (442)
T PLN02208 228 FPEPD-T-SKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPR---GSSTVQEGLPE 302 (442)
T ss_pred ccCcC-C-CCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCC---cccchhhhCCH
Confidence 87532 1 1135678999999998899999999999999999999999999999999999999753 11112357999
Q ss_pred hHHHhhcCCCCC
Q 019759 325 GFQDRVSGTGLV 336 (336)
Q Consensus 325 ~~~~~~~~~g~v 336 (336)
||++|++++|+|
T Consensus 303 ~f~~r~~~~g~~ 314 (442)
T PLN02208 303 GFEERVKGRGVV 314 (442)
T ss_pred HHHHHHhcCCcE
Confidence 999999999875
No 6
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2e-47 Score=357.43 Aligned_cols=316 Identities=22% Similarity=0.338 Sum_probs=215.0
Q ss_pred CCCCCCCceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCC-C
Q 019759 1 MDLQNRQKLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEG-A 79 (336)
Q Consensus 1 ~~~~~~~~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~ 79 (336)
|+.++ ++.||+++|+|++||++||++||+.|+.||+.|||++++.+..+ .. ....++++..+| +++|++ .
T Consensus 1 ~~~~~-~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~--~~--~~~~~i~~~~ip----~glp~~~~ 71 (451)
T PLN02410 1 MEEKP-ARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS--PS--DDFTDFQFVTIP----ESLPESDF 71 (451)
T ss_pred CCcCC-CCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc--cc--cCCCCeEEEeCC----CCCCcccc
Confidence 88775 66799999999999999999999999999999999999865421 11 111368888887 566653 2
Q ss_pred CCCCCCCCCchHHHHHHHHHhhHHHHHhhhh------cCCcEEEEcCCCcchHHHHHHcCCceEEEeccchHHHhhcCCC
Q 019759 80 ESTAELPIHKVPYLKKAHDLLQLPLTNFLQD------SRVNWIIHDFISHWLPPVAAQLGVNSVFFSIYSAATLCFTGPP 153 (336)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~------~~~D~vv~D~~~~~~~~vA~~~~iP~v~~~~~~~~~~~~~~~~ 153 (336)
+. . ....++......+.+.+++++++ .+++|||+|.|++|+.++|+++|||.+.||++++++++.+++.
T Consensus 72 ~~---~--~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~ 146 (451)
T PLN02410 72 KN---L--GPIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVF 146 (451)
T ss_pred cc---c--CHHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHH
Confidence 21 1 11233333333445556665543 1469999999999999999999999999999998877655543
Q ss_pred Ccccc--C-CCCCCCCcccCCccccCCCccccccccc-cccccCCCCchhHHHHHHHHhcCceEEEEccchhchHhHHHH
Q 019759 154 SDVIA--G-RRQKPEDFTVVPEWIDFQSNLAFKPYET-LINQDGMDDSVSDYLRAAFVLQDCRVVILRSCAEFEPDALRL 229 (336)
Q Consensus 154 ~~~~~--~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~~le~~~~~~ 229 (336)
+.... . .+...... .....+|.. .+++..++ .+...........+.... ...+++++++|||++||+++++.
T Consensus 147 ~~~~~~~~~~~~~~~~~-~~~~~iPg~--~~~~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~vlvNTf~eLE~~~~~~ 222 (451)
T PLN02410 147 DKLYANNVLAPLKEPKG-QQNELVPEF--HPLRCKDFPVSHWASLESIMELYRNTV-DKRTASSVIINTASCLESSSLSR 222 (451)
T ss_pred HHHHhccCCCCcccccc-CccccCCCC--CCCChHHCcchhcCCcHHHHHHHHHHh-hcccCCEEEEeChHHhhHHHHHH
Confidence 21110 0 01000000 001123321 12333333 222111111112222222 34578999999999999999999
Q ss_pred HHhhhCCCeeeeeeccCCCCCCCCC-CCccccccccccCCCCeEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEeC
Q 019759 230 LGKMLQKPVLPVGLLAPSLQDSAAG-EHWPVLKDWLDSKENNSVVYAAFGTEMTLSQELLHELAYGLEKSGLPFIWIIKN 308 (336)
Q Consensus 230 l~~~~~p~v~~VGpl~~~~~~~~~~-~~~~~l~~wLd~~~~~~VVyvSfGS~~~~~~~~~~~ia~al~~~~~~~lW~~r~ 308 (336)
+++..++++++|||+++......+. ....+|.+|||+|+++|||||||||...++.+|++|++.||+.+|++|||++|+
T Consensus 223 l~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~ 302 (451)
T PLN02410 223 LQQQLQIPVYPIGPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRP 302 (451)
T ss_pred HHhccCCCEEEecccccccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEcc
Confidence 9876666899999998643211111 223468999999999999999999999999999999999999999999999996
Q ss_pred CCCCCCCCCccCCCChhHHHhhcCCCCC
Q 019759 309 RPLVEGESGLDHLLPPGFQDRVSGTGLV 336 (336)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~g~v 336 (336)
+. .+++ +....+|++|+||++++|+|
T Consensus 303 ~~-~~~~-~~~~~lp~~f~er~~~~g~v 328 (451)
T PLN02410 303 GS-VRGS-EWIESLPKEFSKIISGRGYI 328 (451)
T ss_pred Cc-cccc-chhhcCChhHHHhccCCeEE
Confidence 42 0111 11245899999999999875
No 7
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=4.8e-47 Score=356.72 Aligned_cols=324 Identities=26% Similarity=0.369 Sum_probs=221.8
Q ss_pred CceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCC---CCCCeEEEecCCCCC-CCCCCCCCCC
Q 019759 7 QKLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTN---LSSRLSYIQLPLPQL-DGLPEGAEST 82 (336)
Q Consensus 7 ~~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~-~~~~~~~~~~ 82 (336)
++.||+++|+|++||++||++||+.|+.||+.|||++++.+..++.+.... ....|+++.+|+|.. +++|.+.+..
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~ 86 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENL 86 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCcccc
Confidence 347999999999999999999999999999999999998765444332210 112499999998754 4787765543
Q ss_pred CCCCC-CchHHHHHHHHHhhHHHHHhhhh--cCCcEEEEcCCCcchHHHHHHcCCceEEEeccchHHHhhcCCCCccccC
Q 019759 83 AELPI-HKVPYLKKAHDLLQLPLTNFLQD--SRVNWIIHDFISHWLPPVAAQLGVNSVFFSIYSAATLCFTGPPSDVIAG 159 (336)
Q Consensus 83 ~~~~~-~~~~~~~~~~~~~~~~~~~ll~~--~~~D~vv~D~~~~~~~~vA~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~ 159 (336)
.+... .+...+......+.+.+++++++ .+++|||+|.|++|+.++|+++|||.+.||+++++.++.++......+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~ 166 (491)
T PLN02534 87 DTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHNAH 166 (491)
T ss_pred ccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhccc
Confidence 33222 23334445555677888888875 3579999999999999999999999999999988876653322111111
Q ss_pred CCCCCCCcccCCccccCCCccccccccc-cccccCCCCchhHHHH-HHHHhcCceEEEEccchhchHhHHHHHHhhhCCC
Q 019759 160 RRQKPEDFTVVPEWIDFQSNLAFKPYET-LINQDGMDDSVSDYLR-AAFVLQDCRVVILRSCAEFEPDALRLLGKMLQKP 237 (336)
Q Consensus 160 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~nt~~~le~~~~~~l~~~~~p~ 237 (336)
........+...+++| ....++..++ +++... ..+..+.. +.....+++++++|||++||+++++.+++..+++
T Consensus 167 ~~~~~~~~~~~iPg~p--~~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~~~ 242 (491)
T PLN02534 167 LSVSSDSEPFVVPGMP--QSIEITRAQLPGAFVSL--PDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIKKK 242 (491)
T ss_pred ccCCCCCceeecCCCC--ccccccHHHCChhhcCc--ccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcCCc
Confidence 0000111111112222 1122344444 333211 12222222 2223345789999999999999999998766678
Q ss_pred eeeeeeccCCCC---CC---CCC--CCccccccccccCCCCeEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEeCC
Q 019759 238 VLPVGLLAPSLQ---DS---AAG--EHWPVLKDWLDSKENNSVVYAAFGTEMTLSQELLHELAYGLEKSGLPFIWIIKNR 309 (336)
Q Consensus 238 v~~VGpl~~~~~---~~---~~~--~~~~~l~~wLd~~~~~~VVyvSfGS~~~~~~~~~~~ia~al~~~~~~~lW~~r~~ 309 (336)
++.|||+++... +. ... ..+++|.+|||+|+++|||||||||...++.+|+.|++.||+.++++|||++|++
T Consensus 243 v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~ 322 (491)
T PLN02534 243 VWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTG 322 (491)
T ss_pred EEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 999999975321 00 000 1235699999999999999999999999999999999999999999999999964
Q ss_pred CCCCCCCCccCCCChhHHHhhcCCCCC
Q 019759 310 PLVEGESGLDHLLPPGFQDRVSGTGLV 336 (336)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~g~v 336 (336)
... ++.....+|+||.+|++++|++
T Consensus 323 ~~~--~~~~~~~~p~gf~~~~~~~g~~ 347 (491)
T PLN02534 323 EKH--SELEEWLVKENFEERIKGRGLL 347 (491)
T ss_pred ccc--cchhhhcCchhhHHhhccCCee
Confidence 211 1111235799999999888864
No 8
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=4.1e-47 Score=355.87 Aligned_cols=315 Identities=23% Similarity=0.327 Sum_probs=219.1
Q ss_pred ceEEEEEcCCCccchHHHHHHHHHHH-hCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCC
Q 019759 8 KLHIAMFPWLAYGHIMPFFQVAMFLA-EKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELP 86 (336)
Q Consensus 8 ~~~il~~~~p~~gH~~p~l~la~~La-~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 86 (336)
+.||+++|+|++||++||++||+.|+ ++|++|||++++.+.+++.+... ..++|+++.+|++..++++....
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~-~~~~i~~~~lp~p~~~glp~~~~------ 77 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL-NSTGVDIVGLPSPDISGLVDPSA------ 77 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc-cCCCceEEECCCccccCCCCCCc------
Confidence 46999999999999999999999998 78999999999876543322110 11368899998765545541111
Q ss_pred CCchHHHHHHHHHhhHHHHHhhhhc--CCcEEEEcCCCcchHHHHHHcCCceEEEeccchHHHhhcCCCCccccCCCCCC
Q 019759 87 IHKVPYLKKAHDLLQLPLTNFLQDS--RVNWIIHDFISHWLPPVAAQLGVNSVFFSIYSAATLCFTGPPSDVIAGRRQKP 164 (336)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~ll~~~--~~D~vv~D~~~~~~~~vA~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (336)
.....+......+.+.+++++++. +++|||+|.|++|+.++|+++|||++.|+++++.+++.+.+.+..........
T Consensus 78 -~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~ 156 (481)
T PLN02992 78 -HVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEEH 156 (481)
T ss_pred -cHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcccccccc
Confidence 111233334445667788888763 68999999999999999999999999999999988766555432111100000
Q ss_pred CCcccCCccccCCCccccccccc-cccccCCCCchhHHHHHHHHhcCceEEEEccchhchHhHHHHHHhh------hCCC
Q 019759 165 EDFTVVPEWIDFQSNLAFKPYET-LINQDGMDDSVSDYLRAAFVLQDCRVVILRSCAEFEPDALRLLGKM------LQKP 237 (336)
Q Consensus 165 ~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~~le~~~~~~l~~~------~~p~ 237 (336)
. .......+|+. ..++..++ ..+.......+..+.+......+++++++|||++||+++++.+++. ..+.
T Consensus 157 ~-~~~~~~~iPg~--~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~~ 233 (481)
T PLN02992 157 T-VQRKPLAMPGC--EPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARVP 233 (481)
T ss_pred c-cCCCCcccCCC--CccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCCc
Confidence 0 00001123432 22344444 3222222222344445555567899999999999999999988652 1256
Q ss_pred eeeeeeccCCCCCCCCCCCccccccccccCCCCeEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEeCCCCCC----
Q 019759 238 VLPVGLLAPSLQDSAAGEHWPVLKDWLDSKENNSVVYAAFGTEMTLSQELLHELAYGLEKSGLPFIWIIKNRPLVE---- 313 (336)
Q Consensus 238 v~~VGpl~~~~~~~~~~~~~~~l~~wLd~~~~~~VVyvSfGS~~~~~~~~~~~ia~al~~~~~~~lW~~r~~~~~~---- 313 (336)
++.|||+++... .. ..+++|.+|||+++++|||||||||+..++.+|++||+.||+.++++|||++|++...+
T Consensus 234 v~~VGPl~~~~~-~~--~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~ 310 (481)
T PLN02992 234 VYPIGPLCRPIQ-SS--KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSA 310 (481)
T ss_pred eEEecCccCCcC-CC--cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccc
Confidence 999999986422 11 23467999999998999999999999999999999999999999999999999642100
Q ss_pred -----C---CCCccCCCChhHHHhhcCCCCC
Q 019759 314 -----G---ESGLDHLLPPGFQDRVSGTGLV 336 (336)
Q Consensus 314 -----~---~~~~~~~~~~~~~~~~~~~g~v 336 (336)
+ .++..+.+|+||+||++++|+|
T Consensus 311 ~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~v 341 (481)
T PLN02992 311 YFSANGGETRDNTPEYLPEGFVSRTHDRGFV 341 (481)
T ss_pred cccCcccccccchhhhCCHHHHHHhcCCCEE
Confidence 0 0001346999999999999975
No 9
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=5.3e-46 Score=346.54 Aligned_cols=314 Identities=21% Similarity=0.297 Sum_probs=215.8
Q ss_pred eEEEEEcCCCccchHHHHHHHHHHHhC-CCeEEEEeCCCCCCCC--CCCCCCC--CCCeEEEecCCCCCCCC-CCCCCCC
Q 019759 9 LHIAMFPWLAYGHIMPFFQVAMFLAEK-GHHVSYISTPKNIDRL--PQIPTNL--SSRLSYIQLPLPQLDGL-PEGAEST 82 (336)
Q Consensus 9 ~~il~~~~p~~gH~~p~l~la~~La~r-Gh~VT~~t~~~~~~~~--~~~~~~~--~~~i~~~~~~~~~~~~~-~~~~~~~ 82 (336)
.||+++|+|++||++||++||+.|+.+ |..|||+++......+ .....+. ..+|+++.+|++..+++ +.+
T Consensus 4 pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~---- 79 (470)
T PLN03015 4 PHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPD---- 79 (470)
T ss_pred cEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCC----
Confidence 599999999999999999999999987 9999999876544332 1111111 12599999986543333 211
Q ss_pred CCCCCCchHHHHHHHHHhhHHHHHhhhhc--CCcEEEEcCCCcchHHHHHHcCCc-eEEEeccchHHHhhcCCCCccccC
Q 019759 83 AELPIHKVPYLKKAHDLLQLPLTNFLQDS--RVNWIIHDFISHWLPPVAAQLGVN-SVFFSIYSAATLCFTGPPSDVIAG 159 (336)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~--~~D~vv~D~~~~~~~~vA~~~~iP-~v~~~~~~~~~~~~~~~~~~~~~~ 159 (336)
. .....+......+.+.+++++++. +++|||+|.|++|+.++|+++||| +++|++++++.++.+++.+.....
T Consensus 80 --~--~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~ 155 (470)
T PLN03015 80 --A--TIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTV 155 (470)
T ss_pred --c--cHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhcc
Confidence 0 122234445556778888888764 679999999999999999999999 688888888776665554332111
Q ss_pred CCCCCCCcccCCccccCCCccccccccc-cccccCCCCchhHHHHHHHHhcCceEEEEccchhchHhHHHHHHhhh----
Q 019759 160 RRQKPEDFTVVPEWIDFQSNLAFKPYET-LINQDGMDDSVSDYLRAAFVLQDCRVVILRSCAEFEPDALRLLGKML---- 234 (336)
Q Consensus 160 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~~le~~~~~~l~~~~---- 234 (336)
......+...+ ..+|+. ..++..++ ..+...+...+..+........+++++++|||++||+++++.+++..
T Consensus 156 ~~~~~~~~~~~-~~vPg~--p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~ 232 (470)
T PLN03015 156 VEGEYVDIKEP-LKIPGC--KPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNR 232 (470)
T ss_pred cccccCCCCCe-eeCCCC--CCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhccccc
Confidence 01100000111 123422 23454555 33322221222223334445678999999999999999999987641
Q ss_pred --CCCeeeeeeccCCCCCCCCCCCccccccccccCCCCeEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEeCCCC-
Q 019759 235 --QKPVLPVGLLAPSLQDSAAGEHWPVLKDWLDSKENNSVVYAAFGTEMTLSQELLHELAYGLEKSGLPFIWIIKNRPL- 311 (336)
Q Consensus 235 --~p~v~~VGpl~~~~~~~~~~~~~~~l~~wLd~~~~~~VVyvSfGS~~~~~~~~~~~ia~al~~~~~~~lW~~r~~~~- 311 (336)
.+++++|||++.... . ...+.+|.+|||+|+++|||||||||...++.+|++||+.||+.++++|||++|.+..
T Consensus 233 ~~~~~v~~VGPl~~~~~-~--~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~ 309 (470)
T PLN03015 233 VMKVPVYPIGPIVRTNV-H--VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASY 309 (470)
T ss_pred ccCCceEEecCCCCCcc-c--ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccc
Confidence 256999999985321 1 1223579999999999999999999999999999999999999999999999996521
Q ss_pred ---CCCCC-CccCCCChhHHHhhcCCCCC
Q 019759 312 ---VEGES-GLDHLLPPGFQDRVSGTGLV 336 (336)
Q Consensus 312 ---~~~~~-~~~~~~~~~~~~~~~~~g~v 336 (336)
.+.++ ...+.+|++|.||++++|++
T Consensus 310 ~~~~~~~~~~~~~~lp~~f~er~~~rGl~ 338 (470)
T PLN03015 310 LGASSSDDDQVSASLPEGFLDRTRGVGLV 338 (470)
T ss_pred cccccccccchhhcCChHHHHhhccCceE
Confidence 00011 12347999999999999974
No 10
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=1.4e-45 Score=343.82 Aligned_cols=319 Identities=22% Similarity=0.323 Sum_probs=210.6
Q ss_pred ceEEEEEcCCCccchHHHHHHHHHHHhCC--CeEEE--EeCCCCCCCCCCCCC---CCCCCeEEEecCCCCCCCCCCCCC
Q 019759 8 KLHIAMFPWLAYGHIMPFFQVAMFLAEKG--HHVSY--ISTPKNIDRLPQIPT---NLSSRLSYIQLPLPQLDGLPEGAE 80 (336)
Q Consensus 8 ~~~il~~~~p~~gH~~p~l~la~~La~rG--h~VT~--~t~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~ 80 (336)
+.||+++|+|++||++||++||++|+.|| +.||+ ++++.+...+.+..+ +..++|+++.+|++. ..+.+..
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~--~~~~~~~ 80 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVT--PYSSSST 80 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCC--CCCCccc
Confidence 45999999999999999999999999998 45555 444432211111110 112369999988431 1111111
Q ss_pred CCCCCCCCchHHHHHHHHHhhHHHHHhhhhc----CCcEEEEcCCCcchHHHHHHcCCceEEEeccchHHHhhcCCCCcc
Q 019759 81 STAELPIHKVPYLKKAHDLLQLPLTNFLQDS----RVNWIIHDFISHWLPPVAAQLGVNSVFFSIYSAATLCFTGPPSDV 156 (336)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~----~~D~vv~D~~~~~~~~vA~~~~iP~v~~~~~~~~~~~~~~~~~~~ 156 (336)
. . ......+......+.+.+++++++. +++|||+|.|++|+.++|+++|||.+.|+++++++++.+++.+..
T Consensus 81 ~--~--~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~ 156 (451)
T PLN03004 81 S--R--HHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTI 156 (451)
T ss_pred c--c--cCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhc
Confidence 1 1 1122233334445566666666643 359999999999999999999999999999999988877664421
Q ss_pred ccCCCCC-CCCcccCCccccCCCccccccccc-cccccCCCCchhHHHHHHHHhcCceEEEEccchhchHhHHHHHHhhh
Q 019759 157 IAGRRQK-PEDFTVVPEWIDFQSNLAFKPYET-LINQDGMDDSVSDYLRAAFVLQDCRVVILRSCAEFEPDALRLLGKML 234 (336)
Q Consensus 157 ~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~~le~~~~~~l~~~~ 234 (336)
....+.. ..+. ....+|+ ...++..++ +++...+...+..+........+++++++|||++||+++++.+++..
T Consensus 157 ~~~~~~~~~~~~--~~v~iPg--~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~ 232 (451)
T PLN03004 157 DETTPGKNLKDI--PTVHIPG--VPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEEL 232 (451)
T ss_pred cccccccccccC--CeecCCC--CCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcC
Confidence 1110000 0010 0011232 223444555 44432222223444445555677899999999999999999997643
Q ss_pred -CCCeeeeeeccCCCC-CCCCCCCccccccccccCCCCeEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEeCCCCC
Q 019759 235 -QKPVLPVGLLAPSLQ-DSAAGEHWPVLKDWLDSKENNSVVYAAFGTEMTLSQELLHELAYGLEKSGLPFIWIIKNRPLV 312 (336)
Q Consensus 235 -~p~v~~VGpl~~~~~-~~~~~~~~~~l~~wLd~~~~~~VVyvSfGS~~~~~~~~~~~ia~al~~~~~~~lW~~r~~~~~ 312 (336)
.++++.|||+++... .......+.+|.+|||+|+++|||||||||+..++.+|+++|+.||+.++++|||++|++...
T Consensus 233 ~~~~v~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~ 312 (451)
T PLN03004 233 CFRNIYPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPEL 312 (451)
T ss_pred CCCCEEEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccc
Confidence 257999999985322 111011235699999999999999999999999999999999999999999999999964210
Q ss_pred CC-CCCccCCCChhHHHhhcCCCCC
Q 019759 313 EG-ESGLDHLLPPGFQDRVSGTGLV 336 (336)
Q Consensus 313 ~~-~~~~~~~~~~~~~~~~~~~g~v 336 (336)
+. +....+++|+||+||++++|++
T Consensus 313 ~~~~~~~~~~lp~gf~er~~~~g~~ 337 (451)
T PLN03004 313 EKTELDLKSLLPEGFLSRTEDKGMV 337 (451)
T ss_pred cccccchhhhCChHHHHhccCCcEE
Confidence 00 0011235899999999999864
No 11
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.4e-44 Score=341.37 Aligned_cols=317 Identities=20% Similarity=0.286 Sum_probs=217.3
Q ss_pred CceEEEEEcCCCccchHHHHHHHHHHHhCC----CeEEEEeCCCCCC----CCCCCCCC---CCCCeEEEecCCCCCCCC
Q 019759 7 QKLHIAMFPWLAYGHIMPFFQVAMFLAEKG----HHVSYISTPKNID----RLPQIPTN---LSSRLSYIQLPLPQLDGL 75 (336)
Q Consensus 7 ~~~~il~~~~p~~gH~~p~l~la~~La~rG----h~VT~~t~~~~~~----~~~~~~~~---~~~~i~~~~~~~~~~~~~ 75 (336)
.|.||+++|+|++||++||++||+.|+.|| +.|||++++.+.. ++.....+ ....|+++.+|++ .+
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~---~~ 78 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAV---EP 78 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCC---CC
Confidence 467999999999999999999999999996 7899999875432 12211100 0115889988843 12
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHhhHHHHHhhhhc--CCcEEEEcCCCcchHHHHHHcCCceEEEeccchHHHhhcCCC
Q 019759 76 PEGAESTAELPIHKVPYLKKAHDLLQLPLTNFLQDS--RVNWIIHDFISHWLPPVAAQLGVNSVFFSIYSAATLCFTGPP 153 (336)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~--~~D~vv~D~~~~~~~~vA~~~~iP~v~~~~~~~~~~~~~~~~ 153 (336)
+.+.+. ...++......+.+.+++++++. +++|||+|.|++|+.++|+++|||.+.|+++++++++.+++.
T Consensus 79 p~~~e~-------~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~ 151 (480)
T PLN00164 79 PTDAAG-------VEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRL 151 (480)
T ss_pred CCcccc-------HHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhh
Confidence 323221 11334434555677788888764 469999999999999999999999999999999988877765
Q ss_pred CccccCCCCCCCCcccCCccccCCCccccccccc-cccccCCCCchhHHHHHHHHhcCceEEEEccchhchHhHHHHHHh
Q 019759 154 SDVIAGRRQKPEDFTVVPEWIDFQSNLAFKPYET-LINQDGMDDSVSDYLRAAFVLQDCRVVILRSCAEFEPDALRLLGK 232 (336)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~~le~~~~~~l~~ 232 (336)
+...........+...+ ..+|+. ..++..++ .++.......+..+........+++++++|||++||+++++.+++
T Consensus 152 ~~~~~~~~~~~~~~~~~-~~iPGl--p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 228 (480)
T PLN00164 152 PALDEEVAVEFEEMEGA-VDVPGL--PPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIAD 228 (480)
T ss_pred hhhcccccCcccccCcc-eecCCC--CCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHh
Confidence 43211100000010001 113321 22444455 333322212223333344556779999999999999999999876
Q ss_pred hh------CCCeeeeeeccCCCCCCCCCCCccccccccccCCCCeEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEE
Q 019759 233 ML------QKPVLPVGLLAPSLQDSAAGEHWPVLKDWLDSKENNSVVYAAFGTEMTLSQELLHELAYGLEKSGLPFIWII 306 (336)
Q Consensus 233 ~~------~p~v~~VGpl~~~~~~~~~~~~~~~l~~wLd~~~~~~VVyvSfGS~~~~~~~~~~~ia~al~~~~~~~lW~~ 306 (336)
.. .++++.|||+++..........+++|.+|||+++++|||||||||+..++.+|+++|+.||+.+|++|||++
T Consensus 229 ~~~~~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~ 308 (480)
T PLN00164 229 GRCTPGRPAPTVYPIGPVISLAFTPPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVL 308 (480)
T ss_pred ccccccCCCCceEEeCCCccccccCCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 42 257999999985321011112356799999999999999999999999999999999999999999999999
Q ss_pred eCCCCCC---C-CCCccCCCChhHHHhhcCCCCC
Q 019759 307 KNRPLVE---G-ESGLDHLLPPGFQDRVSGTGLV 336 (336)
Q Consensus 307 r~~~~~~---~-~~~~~~~~~~~~~~~~~~~g~v 336 (336)
|.+.... . +++....+|++|.+|++++|+|
T Consensus 309 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~ 342 (480)
T PLN00164 309 RGPPAAGSRHPTDADLDELLPEGFLERTKGRGLV 342 (480)
T ss_pred cCCcccccccccccchhhhCChHHHHHhcCCCeE
Confidence 9653110 0 1112346999999999999975
No 12
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.7e-44 Score=338.93 Aligned_cols=318 Identities=21% Similarity=0.326 Sum_probs=217.5
Q ss_pred CCCCCCCceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCC--C-CC--C---CCCeEEEecCCCCC
Q 019759 1 MDLQNRQKLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQI--P-TN--L---SSRLSYIQLPLPQL 72 (336)
Q Consensus 1 ~~~~~~~~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~--~-~~--~---~~~i~~~~~~~~~~ 72 (336)
|++++.+ .||+++|+|++||++||++||+.|+.||..|||++++....++.+. . ++ . .+.+++..+|
T Consensus 1 ~~~~~~~-~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p---- 75 (480)
T PLN02555 1 MESESSL-VHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE---- 75 (480)
T ss_pred CCCCCCC-CEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC----
Confidence 7888554 7999999999999999999999999999999999998655444321 0 00 0 1125555444
Q ss_pred CCCCCCCCCCCCCCCCchHHHHHHHHHhhHHHHHhhhh----cCC-cEEEEcCCCcchHHHHHHcCCceEEEeccchHHH
Q 019759 73 DGLPEGAESTAELPIHKVPYLKKAHDLLQLPLTNFLQD----SRV-NWIIHDFISHWLPPVAAQLGVNSVFFSIYSAATL 147 (336)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~----~~~-D~vv~D~~~~~~~~vA~~~~iP~v~~~~~~~~~~ 147 (336)
+++|.+.+... ....++......+.+.+++++++ .++ +|||+|.|++|+.++|+++|||.+.||+++++++
T Consensus 76 dglp~~~~~~~----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~ 151 (480)
T PLN02555 76 DGWAEDDPRRQ----DLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACF 151 (480)
T ss_pred CCCCCCccccc----CHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHH
Confidence 56765543211 12233333333456667776653 244 9999999999999999999999999999999888
Q ss_pred hhcCCCCccc-cCCCCCCCCcccCCccccCCCccccccccc-cccccC--CCCchhHHHHHHHHhcCceEEEEccchhch
Q 019759 148 CFTGPPSDVI-AGRRQKPEDFTVVPEWIDFQSNLAFKPYET-LINQDG--MDDSVSDYLRAAFVLQDCRVVILRSCAEFE 223 (336)
Q Consensus 148 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~nt~~~le 223 (336)
+.+++.+... ........+.+ ..+|+. ..++.+++ .++... +...+..+.+......+++++++|||++||
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~---~~iPgl--p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE 226 (480)
T PLN02555 152 SAYYHYYHGLVPFPTETEPEID---VQLPCM--PLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELE 226 (480)
T ss_pred HHHHHHhhcCCCcccccCCCce---eecCCC--CCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHh
Confidence 7766543210 11000000111 123321 22444555 444321 111223344445556789999999999999
Q ss_pred HhHHHHHHhhhCCCeeeeeeccCCCCC--C---CC-CCCccccccccccCCCCeEEEEEeCccccCCHHHHHHHHHHHHh
Q 019759 224 PDALRLLGKMLQKPVLPVGLLAPSLQD--S---AA-GEHWPVLKDWLDSKENNSVVYAAFGTEMTLSQELLHELAYGLEK 297 (336)
Q Consensus 224 ~~~~~~l~~~~~p~v~~VGpl~~~~~~--~---~~-~~~~~~l~~wLd~~~~~~VVyvSfGS~~~~~~~~~~~ia~al~~ 297 (336)
+++++.+++. .+ ++.|||+++...+ . .. ...+++|.+|||+++++|||||||||+..++.+|+++|+.||++
T Consensus 227 ~~~~~~l~~~-~~-v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~ 304 (480)
T PLN02555 227 KEIIDYMSKL-CP-IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLN 304 (480)
T ss_pred HHHHHHHhhC-CC-EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHh
Confidence 9999988763 34 9999999763211 1 10 02346799999999889999999999999999999999999999
Q ss_pred CCCceEEEEeCCCCCCCCCCccCCCChhHHHhhcCCCCC
Q 019759 298 SGLPFIWIIKNRPLVEGESGLDHLLPPGFQDRVSGTGLV 336 (336)
Q Consensus 298 ~~~~~lW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~v 336 (336)
++++|||++|+... ++ +.....+|++|.+|++++|+|
T Consensus 305 ~~~~flW~~~~~~~-~~-~~~~~~lp~~~~~~~~~~g~v 341 (480)
T PLN02555 305 SGVSFLWVMRPPHK-DS-GVEPHVLPEEFLEKAGDKGKI 341 (480)
T ss_pred cCCeEEEEEecCcc-cc-cchhhcCChhhhhhcCCceEE
Confidence 99999999996420 00 002357899999999888764
No 13
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=3.1e-44 Score=336.71 Aligned_cols=307 Identities=20% Similarity=0.287 Sum_probs=213.3
Q ss_pred ceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCC
Q 019759 8 KLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPI 87 (336)
Q Consensus 8 ~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (336)
+.||+++|+|++||++||++||+.|+.||++||++|++.+.+++.+...+ .++++++.+| ++++.+. ..
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~-~~~i~~v~lp----~g~~~~~------~~ 74 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDP-KLGITFMSIS----DGQDDDP------PR 74 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCC-CCCEEEEECC----CCCCCCc------cc
Confidence 46999999999999999999999999999999999998765544332111 1368999887 4443221 11
Q ss_pred CchHHHHHHHH-HhhHHHHHhhhhc----CCcEEEEcCCCcchHHHHHHcCCceEEEeccchHHHhhcCCCCccc--cCC
Q 019759 88 HKVPYLKKAHD-LLQLPLTNFLQDS----RVNWIIHDFISHWLPPVAAQLGVNSVFFSIYSAATLCFTGPPSDVI--AGR 160 (336)
Q Consensus 88 ~~~~~~~~~~~-~~~~~~~~ll~~~----~~D~vv~D~~~~~~~~vA~~~~iP~v~~~~~~~~~~~~~~~~~~~~--~~~ 160 (336)
.+. .+...+. .+.+.+++++++. +++|||+|.|++|+.++|+++|||.+.||++++.+++.+++.+... +..
T Consensus 75 ~~~-~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~ 153 (448)
T PLN02562 75 DFF-SIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLI 153 (448)
T ss_pred cHH-HHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccc
Confidence 122 2223333 4677788777653 2489999999999999999999999999999988777655443211 100
Q ss_pred CCCCC-CcccCCccccCCCccccccccc-cccccC--CCCchhHHHHHHHHhcCceEEEEccchhchHhHHHHHHhh---
Q 019759 161 RQKPE-DFTVVPEWIDFQSNLAFKPYET-LINQDG--MDDSVSDYLRAAFVLQDCRVVILRSCAEFEPDALRLLGKM--- 233 (336)
Q Consensus 161 ~~~~~-~~~~~~~~~p~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~nt~~~le~~~~~~l~~~--- 233 (336)
..... ....+...+|. ...++..++ .++... +...+..+.+......+++++++|||++||++++..+++.
T Consensus 154 ~~~~~~~~~~~~~~~Pg--~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~ 231 (448)
T PLN02562 154 SETGCPRQLEKICVLPE--QPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNN 231 (448)
T ss_pred ccccccccccccccCCC--CCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhcc
Confidence 00000 00001112332 122444555 443221 1112344445555566789999999999999888876542
Q ss_pred -hCCCeeeeeeccCCCCCC--CC--CCCccccccccccCCCCeEEEEEeCccc-cCCHHHHHHHHHHHHhCCCceEEEEe
Q 019759 234 -LQKPVLPVGLLAPSLQDS--AA--GEHWPVLKDWLDSKENNSVVYAAFGTEM-TLSQELLHELAYGLEKSGLPFIWIIK 307 (336)
Q Consensus 234 -~~p~v~~VGpl~~~~~~~--~~--~~~~~~l~~wLd~~~~~~VVyvSfGS~~-~~~~~~~~~ia~al~~~~~~~lW~~r 307 (336)
..|++++|||+++..... +. .+.+.+|.+|||+++++|||||||||+. .++.+|+++++.||+++|++|||++|
T Consensus 232 ~~~~~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~ 311 (448)
T PLN02562 232 GQNPQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLN 311 (448)
T ss_pred ccCCCEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEc
Confidence 347899999998753211 11 1223568899999988999999999986 78999999999999999999999999
Q ss_pred CCCCCCCCCCccCCCChhHHHhhcCCCCC
Q 019759 308 NRPLVEGESGLDHLLPPGFQDRVSGTGLV 336 (336)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~v 336 (336)
++. .+.+|++|++|+.++|+|
T Consensus 312 ~~~--------~~~l~~~~~~~~~~~~~v 332 (448)
T PLN02562 312 PVW--------REGLPPGYVERVSKQGKV 332 (448)
T ss_pred CCc--------hhhCCHHHHHHhccCEEE
Confidence 753 246899999999888764
No 14
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=3.4e-44 Score=334.84 Aligned_cols=305 Identities=22% Similarity=0.307 Sum_probs=209.1
Q ss_pred ceEEEEEcCCCccchHHHHHHHHHHHh-CCCeEEEEeCCCC-CCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCC
Q 019759 8 KLHIAMFPWLAYGHIMPFFQVAMFLAE-KGHHVSYISTPKN-IDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAEL 85 (336)
Q Consensus 8 ~~~il~~~~p~~gH~~p~l~la~~La~-rGh~VT~~t~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 85 (336)
+.||+++|+|++||++||++||+.|+. +|+.|||++++.+ .+.+.+.. ...++++++.++ ++++.+.+...
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~-~~~~~i~~~~i~----dglp~g~~~~~-- 75 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNH-NNVENLSFLTFS----DGFDDGVISNT-- 75 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccC-CCCCCEEEEEcC----CCCCCcccccc--
Confidence 359999999999999999999999996 7999999998743 22111110 011368898887 67765532211
Q ss_pred CCCchHHHHHHHHHhhHHHHHhhhhc----C-CcEEEEcCCCcchHHHHHHcCCceEEEeccchHHHhhcCCCCccccCC
Q 019759 86 PIHKVPYLKKAHDLLQLPLTNFLQDS----R-VNWIIHDFISHWLPPVAAQLGVNSVFFSIYSAATLCFTGPPSDVIAGR 160 (336)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~ll~~~----~-~D~vv~D~~~~~~~~vA~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~ 160 (336)
.....++......+.+.+++++++. + ++|||+|.+++|+.++|+++|||.+.||++++++++.+++.+...
T Consensus 76 -~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~--- 151 (455)
T PLN02152 76 -DDVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN--- 151 (455)
T ss_pred -ccHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC---
Confidence 1222344444445566777776642 3 499999999999999999999999999999998888766543210
Q ss_pred CCCCCCcccCCccccCCCccccccccc-cccccCC-CC-chhHHHHHHHHhc--CceEEEEccchhchHhHHHHHHhhhC
Q 019759 161 RQKPEDFTVVPEWIDFQSNLAFKPYET-LINQDGM-DD-SVSDYLRAAFVLQ--DCRVVILRSCAEFEPDALRLLGKMLQ 235 (336)
Q Consensus 161 ~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~-~~-~~~~~~~~~~~~~--~~~~~l~nt~~~le~~~~~~l~~~~~ 235 (336)
.. ...+|+. ..++..++ +++...+ .. ....+.+...... +++++++|||++||+++++.++.
T Consensus 152 ---~~-----~~~iPgl--p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~--- 218 (455)
T PLN02152 152 ---NS-----VFEFPNL--PSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN--- 218 (455)
T ss_pred ---CC-----eeecCCC--CCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc---
Confidence 00 0113321 12444455 4443221 11 1233333333332 35799999999999999988864
Q ss_pred CCeeeeeeccCCCC--CC--CC-C---CCccccccccccCCCCeEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEe
Q 019759 236 KPVLPVGLLAPSLQ--DS--AA-G---EHWPVLKDWLDSKENNSVVYAAFGTEMTLSQELLHELAYGLEKSGLPFIWIIK 307 (336)
Q Consensus 236 p~v~~VGpl~~~~~--~~--~~-~---~~~~~l~~wLd~~~~~~VVyvSfGS~~~~~~~~~~~ia~al~~~~~~~lW~~r 307 (336)
..++.|||+++... .. .. . ..+.+|.+|||+|+++|||||||||+..++.+|++||+.||++++++|||++|
T Consensus 219 ~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r 298 (455)
T PLN02152 219 IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVIT 298 (455)
T ss_pred CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 25999999986321 00 00 0 12357999999998899999999999999999999999999999999999999
Q ss_pred CCCCCCC--CCCcc--CCCChhHHHhhcCCCCC
Q 019759 308 NRPLVEG--ESGLD--HLLPPGFQDRVSGTGLV 336 (336)
Q Consensus 308 ~~~~~~~--~~~~~--~~~~~~~~~~~~~~g~v 336 (336)
++...+. +++.. -.+|++|.||++++|+|
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v 331 (455)
T PLN02152 299 DKLNREAKIEGEEETEIEKIAGFRHELEEVGMI 331 (455)
T ss_pred cCcccccccccccccccccchhHHHhccCCeEE
Confidence 7531110 00011 13589999999998875
No 15
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=2.7e-44 Score=336.19 Aligned_cols=314 Identities=19% Similarity=0.239 Sum_probs=213.2
Q ss_pred CceEEEEEcCCCccchHHHHHHHHHHHhCC--CeEEEEeCCCCCC-CCCCCCC---CCCCCeEEEecCCCCCCCCCCCCC
Q 019759 7 QKLHIAMFPWLAYGHIMPFFQVAMFLAEKG--HHVSYISTPKNID-RLPQIPT---NLSSRLSYIQLPLPQLDGLPEGAE 80 (336)
Q Consensus 7 ~~~~il~~~~p~~gH~~p~l~la~~La~rG--h~VT~~t~~~~~~-~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~ 80 (336)
++.||+++|+|++||++||++||+.|+.|| ..|||++++.+.. .+....+ +..++++++.+|... ..+.. .
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~--~~~~~-~ 78 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELE--EKPTL-G 78 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCC--CCCcc-c
Confidence 347999999999999999999999999998 9999999876542 2211111 111369999998311 11110 0
Q ss_pred CCCCCCCCchHHHHHHHHHh----hHHHHHhhhhc----CC-cEEEEcCCCcchHHHHHHcCCceEEEeccchHHHhhcC
Q 019759 81 STAELPIHKVPYLKKAHDLL----QLPLTNFLQDS----RV-NWIIHDFISHWLPPVAAQLGVNSVFFSIYSAATLCFTG 151 (336)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~----~~~~~~ll~~~----~~-D~vv~D~~~~~~~~vA~~~~iP~v~~~~~~~~~~~~~~ 151 (336)
.. .....++......+ .+.+++++++. ++ +|||+|.|++|+.++|+++|||.+.|+++++..++.++
T Consensus 79 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~ 154 (468)
T PLN02207 79 GT----QSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQ 154 (468)
T ss_pred cc----cCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHH
Confidence 10 11222333333333 45566666532 34 89999999999999999999999999999998877766
Q ss_pred CCCccccCCCCCC-CCcccCCccccCCCccccccccc-cccccCCCCchhHHHHHHHHhcCceEEEEccchhchHhHHHH
Q 019759 152 PPSDVIAGRRQKP-EDFTVVPEWIDFQSNLAFKPYET-LINQDGMDDSVSDYLRAAFVLQDCRVVILRSCAEFEPDALRL 229 (336)
Q Consensus 152 ~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~~le~~~~~~ 229 (336)
+.+.......... .+.. ....+|+.. ..++..++ .++...+ .+..+.+......+++++++|||++||+++++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~-~~~~vPgl~-~~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~ 230 (468)
T PLN02207 155 YLADRHSKDTSVFVRNSE-EMLSIPGFV-NPVPANVLPSALFVED--GYDAYVKLAILFTKANGILVNSSFDIEPYSVNH 230 (468)
T ss_pred HhhhccccccccCcCCCC-CeEECCCCC-CCCChHHCcchhcCCc--cHHHHHHHHHhcccCCEEEEEchHHHhHHHHHH
Confidence 5432211000000 0000 011233210 13455555 4443211 233344444556789999999999999999988
Q ss_pred HHh-hhCCCeeeeeeccCCCCCCCC---CCCccccccccccCCCCeEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEE
Q 019759 230 LGK-MLQKPVLPVGLLAPSLQDSAA---GEHWPVLKDWLDSKENNSVVYAAFGTEMTLSQELLHELAYGLEKSGLPFIWI 305 (336)
Q Consensus 230 l~~-~~~p~v~~VGpl~~~~~~~~~---~~~~~~l~~wLd~~~~~~VVyvSfGS~~~~~~~~~~~ia~al~~~~~~~lW~ 305 (336)
+++ ...|++++|||+++......+ ...+++|.+|||+|+++|||||||||...++.+|+++|+.||++++++|||+
T Consensus 231 ~~~~~~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~ 310 (468)
T PLN02207 231 FLDEQNYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWS 310 (468)
T ss_pred HHhccCCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEE
Confidence 865 244789999999864321110 0123579999999988999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCCccCCCChhHHHhhcCCCCC
Q 019759 306 IKNRPLVEGESGLDHLLPPGFQDRVSGTGLV 336 (336)
Q Consensus 306 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~v 336 (336)
+|++. .+ ..+++|++|++|++++|+|
T Consensus 311 ~r~~~---~~--~~~~lp~~f~er~~~~g~i 336 (468)
T PLN02207 311 LRTEE---VT--NDDLLPEGFLDRVSGRGMI 336 (468)
T ss_pred EeCCC---cc--ccccCCHHHHhhcCCCeEE
Confidence 99642 11 2357999999999998875
No 16
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.9e-44 Score=333.96 Aligned_cols=295 Identities=23% Similarity=0.350 Sum_probs=209.1
Q ss_pred CCceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCC-CCCCCC
Q 019759 6 RQKLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEG-AESTAE 84 (336)
Q Consensus 6 ~~~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~ 84 (336)
+++.||+++|+|++||++||++||+.|+.+|+.|||++++.+.+++... ..++|+++.+| +++|++ .+...
T Consensus 3 ~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~---~~~~i~~~~ip----dglp~~~~~~~~- 74 (449)
T PLN02173 3 KMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD---PSSPISIATIS----DGYDQGGFSSAG- 74 (449)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC---CCCCEEEEEcC----CCCCCccccccc-
Confidence 3457999999999999999999999999999999999998655444221 12369999987 677753 23211
Q ss_pred CCCCchHHHHHHHHHhhHHHHHhhhhc----CC-cEEEEcCCCcchHHHHHHcCCceEEEeccchHHHhhcCCCCccccC
Q 019759 85 LPIHKVPYLKKAHDLLQLPLTNFLQDS----RV-NWIIHDFISHWLPPVAAQLGVNSVFFSIYSAATLCFTGPPSDVIAG 159 (336)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~ll~~~----~~-D~vv~D~~~~~~~~vA~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~ 159 (336)
....++......+.+.+++++++. +| +|||+|.|++|+.++|+++|||.+.||+++++.++.+++. ...
T Consensus 75 ---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~-~~~-- 148 (449)
T PLN02173 75 ---SVPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLS-YIN-- 148 (449)
T ss_pred ---CHHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhH-Hhc--
Confidence 122344444445677788877652 45 9999999999999999999999999999888776554431 110
Q ss_pred CCCCCCCcccCCccccCCCccccccccc-cccccC--CCCchhHHHHHHHHhcCceEEEEccchhchHhHHHHHHhhhCC
Q 019759 160 RRQKPEDFTVVPEWIDFQSNLAFKPYET-LINQDG--MDDSVSDYLRAAFVLQDCRVVILRSCAEFEPDALRLLGKMLQK 236 (336)
Q Consensus 160 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~nt~~~le~~~~~~l~~~~~p 236 (336)
..+...+.+++| .++..++ .++... +......+.+......+++++++|||++||+++++.+++. +
T Consensus 149 ----~~~~~~~~pg~p-----~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~--~ 217 (449)
T PLN02173 149 ----NGSLTLPIKDLP-----LLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV--C 217 (449)
T ss_pred ----cCCccCCCCCCC-----CCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc--C
Confidence 011111122222 2344455 444321 1112233444455567899999999999999999888753 4
Q ss_pred CeeeeeeccCCC-------CCCC---CC---CCccccccccccCCCCeEEEEEeCccccCCHHHHHHHHHHHHhCCCceE
Q 019759 237 PVLPVGLLAPSL-------QDSA---AG---EHWPVLKDWLDSKENNSVVYAAFGTEMTLSQELLHELAYGLEKSGLPFI 303 (336)
Q Consensus 237 ~v~~VGpl~~~~-------~~~~---~~---~~~~~l~~wLd~~~~~~VVyvSfGS~~~~~~~~~~~ia~al~~~~~~~l 303 (336)
+++.|||+++.. .... .. ..+++|.+|||+++++|||||||||+..++.+|+++|+.|| ++++||
T Consensus 218 ~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~fl 295 (449)
T PLN02173 218 PVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYL 295 (449)
T ss_pred CeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEE
Confidence 699999997531 0000 00 11345999999999999999999999999999999999999 789999
Q ss_pred EEEeCCCCCCCCCCccCCCChhHHHhhc-CCCC
Q 019759 304 WIIKNRPLVEGESGLDHLLPPGFQDRVS-GTGL 335 (336)
Q Consensus 304 W~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~g~ 335 (336)
|++|.+. .+.+|++|.+|+. ++|+
T Consensus 296 Wvvr~~~--------~~~lp~~~~~~~~~~~~~ 320 (449)
T PLN02173 296 WVVRASE--------ESKLPPGFLETVDKDKSL 320 (449)
T ss_pred EEEeccc--------hhcccchHHHhhcCCceE
Confidence 9999752 3468999999985 4444
No 17
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=1.1e-43 Score=336.72 Aligned_cols=324 Identities=22% Similarity=0.345 Sum_probs=217.0
Q ss_pred CceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCC---CCC--CeEEEecCCCCC-CCCCCCCC
Q 019759 7 QKLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTN---LSS--RLSYIQLPLPQL-DGLPEGAE 80 (336)
Q Consensus 7 ~~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~---~~~--~i~~~~~~~~~~-~~~~~~~~ 80 (336)
++.||+++|+|++||+||+++||++|+.||++|||++++.+...+.+.... ..+ .+.+..+++|.. +++|.+.+
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e 83 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCE 83 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCcc
Confidence 357999999999999999999999999999999999998766544432211 011 235555665543 25666544
Q ss_pred CCCCC----C---CCchHHHHHHHHHhhHHHHHhhhhcCCcEEEEcCCCcchHHHHHHcCCceEEEeccchHHHhhcCCC
Q 019759 81 STAEL----P---IHKVPYLKKAHDLLQLPLTNFLQDSRVNWIIHDFISHWLPPVAAQLGVNSVFFSIYSAATLCFTGPP 153 (336)
Q Consensus 81 ~~~~~----~---~~~~~~~~~~~~~~~~~~~~ll~~~~~D~vv~D~~~~~~~~vA~~~~iP~v~~~~~~~~~~~~~~~~ 153 (336)
..... . ..+...+....+.+.+.+++++++.++||||+|.++.|+.++|+++|||.|.||++++++.+.++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~~~ 163 (482)
T PLN03007 84 NVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASYCI 163 (482)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHHHH
Confidence 32211 0 0122233344455777888888777899999999999999999999999999999988776554422
Q ss_pred CccccCCCCCCCCcccCCccccCCCccccccccccccccCCCCchhHHHHHHHHhcCceEEEEccchhchHhHHHHHHhh
Q 019759 154 SDVIAGRRQKPEDFTVVPEWIDFQSNLAFKPYETLINQDGMDDSVSDYLRAAFVLQDCRVVILRSCAEFEPDALRLLGKM 233 (336)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~~le~~~~~~l~~~ 233 (336)
..................+++|. .+.++..++.... .............+...+++++++|||++||+++.+.+++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~pg~p~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~~~~~ 240 (482)
T PLN03007 164 RVHKPQKKVASSSEPFVIPDLPG--DIVITEEQINDAD-EESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADFYKSF 240 (482)
T ss_pred HhcccccccCCCCceeeCCCCCC--ccccCHHhcCCCC-CchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHHHHhc
Confidence 11110000000000011122221 1122222221010 01111133344445567899999999999999988888765
Q ss_pred hCCCeeeeeeccCCCCC-------CCCC-CCccccccccccCCCCeEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEE
Q 019759 234 LQKPVLPVGLLAPSLQD-------SAAG-EHWPVLKDWLDSKENNSVVYAAFGTEMTLSQELLHELAYGLEKSGLPFIWI 305 (336)
Q Consensus 234 ~~p~v~~VGpl~~~~~~-------~~~~-~~~~~l~~wLd~~~~~~VVyvSfGS~~~~~~~~~~~ia~al~~~~~~~lW~ 305 (336)
....+++|||+.+.... .... ..+.+|.+|||+++++|||||||||+.+++.+|+.+++.||+.++++|||+
T Consensus 241 ~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~ 320 (482)
T PLN03007 241 VAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWV 320 (482)
T ss_pred cCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 54579999998653210 0001 124679999999989999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCCccCCCChhHHHhhcCCCCC
Q 019759 306 IKNRPLVEGESGLDHLLPPGFQDRVSGTGLV 336 (336)
Q Consensus 306 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~v 336 (336)
+|++. ...+....+|++|.+|++++|++
T Consensus 321 ~~~~~---~~~~~~~~lp~~~~~r~~~~g~~ 348 (482)
T PLN03007 321 VRKNE---NQGEKEEWLPEGFEERTKGKGLI 348 (482)
T ss_pred EecCC---cccchhhcCCHHHHHHhccCCEE
Confidence 99763 11012346899999999988864
No 18
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.9e-42 Score=324.99 Aligned_cols=311 Identities=22% Similarity=0.338 Sum_probs=212.2
Q ss_pred CCCCCCCceEEEEEcCCCccchHHHHHHHHH--HHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCC
Q 019759 1 MDLQNRQKLHIAMFPWLAYGHIMPFFQVAMF--LAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEG 78 (336)
Q Consensus 1 ~~~~~~~~~~il~~~~p~~gH~~p~l~la~~--La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 78 (336)
|..-+.++.||+++|+|++||++||++||++ |++||++|||++++.+.+++.+.. ...+.+++..++ ++++++
T Consensus 1 ~~~~~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~-~~~~~~~~~~~~----~glp~~ 75 (456)
T PLN02210 1 MGSSEGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVE-KPRRPVDLVFFS----DGLPKD 75 (456)
T ss_pred CCCcCCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhcccc-CCCCceEEEECC----CCCCCC
Confidence 5455667789999999999999999999999 569999999999987655543321 112356666555 566654
Q ss_pred CCCCCCCCCCchHHHHHHHHHhhHHHHHhhhhcCCcEEEEcCCCcchHHHHHHcCCceEEEeccchHHHhhcCCCCcccc
Q 019759 79 AESTAELPIHKVPYLKKAHDLLQLPLTNFLQDSRVNWIIHDFISHWLPPVAAQLGVNSVFFSIYSAATLCFTGPPSDVIA 158 (336)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~vv~D~~~~~~~~vA~~~~iP~v~~~~~~~~~~~~~~~~~~~~~ 158 (336)
.+. ....++....+.+.+.+++++++.++||||+|.++.|+.++|+++|||.+.||++++.+++.+++.+....
T Consensus 76 ~~~------~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~ 149 (456)
T PLN02210 76 DPR------APETLLKSLNKVGAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTN 149 (456)
T ss_pred ccc------CHHHHHHHHHHhhhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccC
Confidence 321 12233333333456678888877789999999999999999999999999999998887776654422111
Q ss_pred CCCCCCCCcccCCccccCCCccccccccc-cccccCCCCchh-HHHHHHHHhcCceEEEEccchhchHhHHHHHHhhhCC
Q 019759 159 GRRQKPEDFTVVPEWIDFQSNLAFKPYET-LINQDGMDDSVS-DYLRAAFVLQDCRVVILRSCAEFEPDALRLLGKMLQK 236 (336)
Q Consensus 159 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~nt~~~le~~~~~~l~~~~~p 236 (336)
..+.. .+.. ....+|.. ..++..++ .++...+...+. ...+......+++++++|||++||++++..+++ . +
T Consensus 150 ~~~~~-~~~~-~~~~~Pgl--~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-~-~ 223 (456)
T PLN02210 150 SFPDL-EDLN-QTVELPAL--PLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD-L-K 223 (456)
T ss_pred CCCcc-cccC-CeeeCCCC--CCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh-c-C
Confidence 11110 0000 00113321 12333444 333322212122 222333445678899999999999999988876 3 5
Q ss_pred CeeeeeeccCCC---CCCC--------CC-CCccccccccccCCCCeEEEEEeCccccCCHHHHHHHHHHHHhCCCceEE
Q 019759 237 PVLPVGLLAPSL---QDSA--------AG-EHWPVLKDWLDSKENNSVVYAAFGTEMTLSQELLHELAYGLEKSGLPFIW 304 (336)
Q Consensus 237 ~v~~VGpl~~~~---~~~~--------~~-~~~~~l~~wLd~~~~~~VVyvSfGS~~~~~~~~~~~ia~al~~~~~~~lW 304 (336)
++++|||+++.. .... .. ..+.+|.+|||+++++|||||||||....+.+|++++++||+++|++|||
T Consensus 224 ~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw 303 (456)
T PLN02210 224 PVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLW 303 (456)
T ss_pred CEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEE
Confidence 799999998521 1000 00 12456899999998899999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCCCccCCCChhHHHhhc-CCCCC
Q 019759 305 IIKNRPLVEGESGLDHLLPPGFQDRVS-GTGLV 336 (336)
Q Consensus 305 ~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~g~v 336 (336)
++|++. ....+++|.+|++ ++|+|
T Consensus 304 ~~~~~~--------~~~~~~~~~~~~~~~~g~v 328 (456)
T PLN02210 304 VIRPKE--------KAQNVQVLQEMVKEGQGVV 328 (456)
T ss_pred EEeCCc--------cccchhhHHhhccCCCeEE
Confidence 999653 1123467888874 67754
No 19
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.4e-42 Score=326.27 Aligned_cols=317 Identities=22% Similarity=0.346 Sum_probs=211.0
Q ss_pred ceEEEEEcCCCccchHHHHHHHHHHHhCC--CeEEEEeCCCCCCCC---CCCCCC----CCCCeEEEecCCCCCCCCCCC
Q 019759 8 KLHIAMFPWLAYGHIMPFFQVAMFLAEKG--HHVSYISTPKNIDRL---PQIPTN----LSSRLSYIQLPLPQLDGLPEG 78 (336)
Q Consensus 8 ~~~il~~~~p~~gH~~p~l~la~~La~rG--h~VT~~t~~~~~~~~---~~~~~~----~~~~i~~~~~~~~~~~~~~~~ 78 (336)
|.||+++|+|++||++||++||+.|+.|| ..|||++++.+..++ .....+ ..++|+++.+|++. +..
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~----~~~ 77 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGD----QPT 77 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCC----CCc
Confidence 57999999999999999999999999998 889999987654321 110100 02369999988432 111
Q ss_pred CCCCCCCCCCchHHHHHHHHHhhHHHHHhhhh-----cCC-cEEEEcCCCcchHHHHHHcCCceEEEeccchHHHhhcCC
Q 019759 79 AESTAELPIHKVPYLKKAHDLLQLPLTNFLQD-----SRV-NWIIHDFISHWLPPVAAQLGVNSVFFSIYSAATLCFTGP 152 (336)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-----~~~-D~vv~D~~~~~~~~vA~~~~iP~v~~~~~~~~~~~~~~~ 152 (336)
.. .. .+..++......+.+.+++++.+ .++ +|||+|.|++|+.++|+++|||++.||++++++++.+++
T Consensus 78 ~~----~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~ 152 (481)
T PLN02554 78 TE----DP-TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLH 152 (481)
T ss_pred cc----ch-HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHh
Confidence 00 11 12223333333345555555533 133 899999999999999999999999999999998888776
Q ss_pred CCccccCCCCCCCCccc--CCccccCCCccccccccc-cccccCCCCchhHHHHHHHHhcCceEEEEccchhchHhHHHH
Q 019759 153 PSDVIAGRRQKPEDFTV--VPEWIDFQSNLAFKPYET-LINQDGMDDSVSDYLRAAFVLQDCRVVILRSCAEFEPDALRL 229 (336)
Q Consensus 153 ~~~~~~~~~~~~~~~~~--~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~~le~~~~~~ 229 (336)
.+...........++.. ....+|+.. .+++..++ .++.. ...+..+.+......+++++++|||.+||+.++..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~v~iPgl~-~pl~~~dlp~~~~~--~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~ 229 (481)
T PLN02554 153 VQMLYDEKKYDVSELEDSEVELDVPSLT-RPYPVKCLPSVLLS--KEWLPLFLAQARRFREMKGILVNTVAELEPQALKF 229 (481)
T ss_pred hhhhccccccCccccCCCCceeECCCCC-CCCCHHHCCCcccC--HHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHH
Confidence 54321110000001100 001233210 12343444 33321 11223344455566789999999999999999988
Q ss_pred HHhh--hCCCeeeeeeccC-CCCCCC-CCCCccccccccccCCCCeEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEE
Q 019759 230 LGKM--LQKPVLPVGLLAP-SLQDSA-AGEHWPVLKDWLDSKENNSVVYAAFGTEMTLSQELLHELAYGLEKSGLPFIWI 305 (336)
Q Consensus 230 l~~~--~~p~v~~VGpl~~-~~~~~~-~~~~~~~l~~wLd~~~~~~VVyvSfGS~~~~~~~~~~~ia~al~~~~~~~lW~ 305 (336)
+++. ..|++++|||++. ...... ...++++|.+|||+++++|||||||||+..++.+|+++|+.||+++|++|||+
T Consensus 230 l~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~ 309 (481)
T PLN02554 230 FSGSSGDLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWS 309 (481)
T ss_pred HHhcccCCCCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEE
Confidence 8763 2368999999943 322110 01345689999999988999999999999999999999999999999999999
Q ss_pred EeCCCCC---C--CC-CCccCCCChhHHHhhcCCCCC
Q 019759 306 IKNRPLV---E--GE-SGLDHLLPPGFQDRVSGTGLV 336 (336)
Q Consensus 306 ~r~~~~~---~--~~-~~~~~~~~~~~~~~~~~~g~v 336 (336)
+|.+... + ++ .+....+|++|++|++++|+|
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v 346 (481)
T PLN02554 310 LRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKV 346 (481)
T ss_pred EcCCcccccccccccccchhhhCChHHHHHhccCceE
Confidence 9974210 0 00 011245799999999998874
No 20
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.2e-42 Score=325.97 Aligned_cols=322 Identities=22% Similarity=0.286 Sum_probs=204.7
Q ss_pred CCceEEEEEcCCCccchHHHHHHHHHHHhCCC---eEEEEeCCCCCC-CCCCCCC---CCCCCeEEEecCCCCCCCCCCC
Q 019759 6 RQKLHIAMFPWLAYGHIMPFFQVAMFLAEKGH---HVSYISTPKNID-RLPQIPT---NLSSRLSYIQLPLPQLDGLPEG 78 (336)
Q Consensus 6 ~~~~~il~~~~p~~gH~~p~l~la~~La~rGh---~VT~~t~~~~~~-~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~ 78 (336)
+++.||+++|+|++||++||++||+.|+.||. .||++++..... ....... ...++|+++.+|++. + +.+
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~--~-p~~ 77 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQ--D-PPP 77 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCC--C-Ccc
Confidence 35679999999999999999999999999983 567776543321 1111010 111369999988532 1 211
Q ss_pred CCCCCCCC-CCchHHHHHHHHHhhHHHHHhhhh-----c-CCcEEEEcCCCcchHHHHHHcCCceEEEeccchHHHhhcC
Q 019759 79 AESTAELP-IHKVPYLKKAHDLLQLPLTNFLQD-----S-RVNWIIHDFISHWLPPVAAQLGVNSVFFSIYSAATLCFTG 151 (336)
Q Consensus 79 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~-----~-~~D~vv~D~~~~~~~~vA~~~~iP~v~~~~~~~~~~~~~~ 151 (336)
.+...... ..+...+......+.+.+++++.+ . +++|||+|.|++|+.++|+++|||.+.||++++..++.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~ 157 (475)
T PLN02167 78 MELFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMK 157 (475)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHH
Confidence 11000011 011111222222233334444322 1 3499999999999999999999999999999998877766
Q ss_pred CCCccccCCCCC--CCCcccCCccccCCCccccccccc-cccccCCCCchhHHHHHHHHhcCceEEEEccchhchHhHHH
Q 019759 152 PPSDVIAGRRQK--PEDFTVVPEWIDFQSNLAFKPYET-LINQDGMDDSVSDYLRAAFVLQDCRVVILRSCAEFEPDALR 228 (336)
Q Consensus 152 ~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~~le~~~~~ 228 (336)
+.+......... ......+ ..+|+.. ..++..++ .++... ..+..+....+...+++++++|||++||+++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~-~~iPgl~-~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~ 233 (475)
T PLN02167 158 YLPERHRKTASEFDLSSGEEE-LPIPGFV-NSVPTKVLPPGLFMK--ESYEAWVEIAERFPEAKGILVNSFTELEPNAFD 233 (475)
T ss_pred HHHHhccccccccccCCCCCe-eECCCCC-CCCChhhCchhhhCc--chHHHHHHHHHhhcccCEeeeccHHHHHHHHHH
Confidence 543211100000 0000001 1133210 11333333 222211 113334445556678999999999999999999
Q ss_pred HHHhhh--CCCeeeeeeccCCCCC-CCCC--CCccccccccccCCCCeEEEEEeCccccCCHHHHHHHHHHHHhCCCceE
Q 019759 229 LLGKML--QKPVLPVGLLAPSLQD-SAAG--EHWPVLKDWLDSKENNSVVYAAFGTEMTLSQELLHELAYGLEKSGLPFI 303 (336)
Q Consensus 229 ~l~~~~--~p~v~~VGpl~~~~~~-~~~~--~~~~~l~~wLd~~~~~~VVyvSfGS~~~~~~~~~~~ia~al~~~~~~~l 303 (336)
.+++.. .|++++|||+++.... .... ..+.+|.+|||+++++|||||||||+..++.+|++||+.||+++|++||
T Consensus 234 ~l~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~fl 313 (475)
T PLN02167 234 YFSRLPENYPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFL 313 (475)
T ss_pred HHHhhcccCCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEE
Confidence 887631 2689999999874320 0011 1235799999999889999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCCCccCCCChhHHHhhcCCCCC
Q 019759 304 WIIKNRPLVEGESGLDHLLPPGFQDRVSGTGLV 336 (336)
Q Consensus 304 W~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~v 336 (336)
|++|.+.. ........+|++|.||++++|+|
T Consensus 314 w~~~~~~~--~~~~~~~~lp~~~~er~~~rg~v 344 (475)
T PLN02167 314 WSIRTNPA--EYASPYEPLPEGFMDRVMGRGLV 344 (475)
T ss_pred EEEecCcc--cccchhhhCChHHHHHhccCeee
Confidence 99996420 11112356999999999999875
No 21
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.6e-40 Score=311.25 Aligned_cols=292 Identities=19% Similarity=0.314 Sum_probs=201.3
Q ss_pred CCceEEEEEcCCCccchHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCC
Q 019759 6 RQKLHIAMFPWLAYGHIMPFFQVAMFLAEK--GHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTA 83 (336)
Q Consensus 6 ~~~~~il~~~~p~~gH~~p~l~la~~La~r--Gh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 83 (336)
..+.||+++|+|++||++||++||++|+.| ||+|||++++.+.+.+.+... ..+++++.+| ++++.+.+..
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~--~~gi~fv~lp----~~~p~~~~~~- 80 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK--PDNIRFATIP----NVIPSELVRA- 80 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC--CCCEEEEECC----CCCCCccccc-
Confidence 566899999999999999999999999999 999999999876655544311 2379999887 3444332211
Q ss_pred CCCCCchHHHHHHHHHhhHHHHHhhhhc--CCcEEEEcCCCcchHHHHHHcCCceEEEeccchHHHhhcCCCCccccC--
Q 019759 84 ELPIHKVPYLKKAHDLLQLPLTNFLQDS--RVNWIIHDFISHWLPPVAAQLGVNSVFFSIYSAATLCFTGPPSDVIAG-- 159 (336)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~--~~D~vv~D~~~~~~~~vA~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~-- 159 (336)
.....++......+.+.+++++++. ++||||+|.++.|+.++|+++|||+|.|+++++..++.+.+.+.....
T Consensus 81 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~ 157 (459)
T PLN02448 81 ---ADFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGH 157 (459)
T ss_pred ---cCHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccC
Confidence 1122333333334556677777653 579999999999999999999999999999998766655544321110
Q ss_pred CCCCCCC-cccCCccccCCCccccccccc-cccccCCCCchhHHHHHHHHhcCceEEEEccchhchHhHHHHHHhhhCCC
Q 019759 160 RRQKPED-FTVVPEWIDFQSNLAFKPYET-LINQDGMDDSVSDYLRAAFVLQDCRVVILRSCAEFEPDALRLLGKMLQKP 237 (336)
Q Consensus 160 ~~~~~~~-~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~~le~~~~~~l~~~~~p~ 237 (336)
.+..... ...+...+|+. ..++..++ .++.......+..+........+++++++|||++||+.+++.+++.++++
T Consensus 158 ~~~~~~~~~~~~~~~iPg~--~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~ 235 (459)
T PLN02448 158 FPVELSESGEERVDYIPGL--SSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFP 235 (459)
T ss_pred CCCccccccCCccccCCCC--CCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCc
Confidence 0000000 00011124422 12333344 33322111112334444445567889999999999999999998766668
Q ss_pred eeeeeeccCCCCC---CCCC---CCccccccccccCCCCeEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEeCC
Q 019759 238 VLPVGLLAPSLQD---SAAG---EHWPVLKDWLDSKENNSVVYAAFGTEMTLSQELLHELAYGLEKSGLPFIWIIKNR 309 (336)
Q Consensus 238 v~~VGpl~~~~~~---~~~~---~~~~~l~~wLd~~~~~~VVyvSfGS~~~~~~~~~~~ia~al~~~~~~~lW~~r~~ 309 (336)
++.|||+.+.... .... ..+.+|.+|||+++++|||||||||+.+++.++++++++||++++++|||+++.+
T Consensus 236 ~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~ 313 (459)
T PLN02448 236 VYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGE 313 (459)
T ss_pred eEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCc
Confidence 9999999763210 0000 1124799999999889999999999999999999999999999999999999854
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=99.94 E-value=1.1e-26 Score=221.30 Aligned_cols=277 Identities=15% Similarity=0.175 Sum_probs=171.4
Q ss_pred ceEEEEE-cCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCC----
Q 019759 8 KLHIAMF-PWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAEST---- 82 (336)
Q Consensus 8 ~~~il~~-~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---- 82 (336)
..+|+.+ |.++.||++.+..|+++|++|||+||++++.... ..... ...+++.+.++... +.........
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~-~~~~~---~~~~~~~i~~~~~~-~~~~~~~~~~~~~~ 94 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRV-YYASH---LCGNITEIDASLSV-EYFKKLVKSSAVFR 94 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEeccccc-ccccC---CCCCEEEEEcCCCh-HHHHHHHhhhhHHH
Confidence 3467644 8899999999999999999999999999875321 11110 01356666554210 1100000000
Q ss_pred --CCCC--CCc----hHHHHHHHHH--hhHHHHHhhh--hcCCcEEEEcCCCcchHHHHHHc-CCceEEEeccchHHHhh
Q 019759 83 --AELP--IHK----VPYLKKAHDL--LQLPLTNFLQ--DSRVNWIIHDFISHWLPPVAAQL-GVNSVFFSIYSAATLCF 149 (336)
Q Consensus 83 --~~~~--~~~----~~~~~~~~~~--~~~~~~~ll~--~~~~D~vv~D~~~~~~~~vA~~~-~iP~v~~~~~~~~~~~~ 149 (336)
.... ... ...+...|+. ..+.++++++ +.+||+||+|.+..|++.+|+++ ++|.|.+++++......
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~ 174 (507)
T PHA03392 95 KRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENF 174 (507)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHH
Confidence 0000 000 0111223333 2456778887 66899999999988888899999 99998888765542221
Q ss_pred cCCCCccccCCCCCCCCcccCCccccCC-----Ccccccccccccccc-----------C-CCCch-hHHH----HHHHH
Q 019759 150 TGPPSDVIAGRRQKPEDFTVVPEWIDFQ-----SNLAFKPYETLINQD-----------G-MDDSV-SDYL----RAAFV 207 (336)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~-----~~~~~~~~~~~~~~~-----------~-~~~~~-~~~~----~~~~~ 207 (336)
... . +.+.+++++|.. +.|.+..|-.+++.. . ++..+ +.+. ...+.
T Consensus 175 ~~~----g--------g~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l 242 (507)
T PHA03392 175 ETM----G--------AVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIREL 242 (507)
T ss_pred Hhh----c--------cCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHH
Confidence 110 0 012334455421 112221110011100 0 00011 1111 12344
Q ss_pred hcCceEEEEccchhchHhHHHHHHhhhCCCeeeeeeccCCCCCCCCCCCccccccccccCCCCeEEEEEeCccc---cCC
Q 019759 208 LQDCRVVILRSCAEFEPDALRLLGKMLQKPVLPVGLLAPSLQDSAAGEHWPVLKDWLDSKENNSVVYAAFGTEM---TLS 284 (336)
Q Consensus 208 ~~~~~~~l~nt~~~le~~~~~~l~~~~~p~v~~VGpl~~~~~~~~~~~~~~~l~~wLd~~~~~~VVyvSfGS~~---~~~ 284 (336)
..+++++++||...+|++ +..+|++.+|||++.++... .++++++++||+++ ++++|||||||+. .++
T Consensus 243 ~~~~~l~lvns~~~~d~~------rp~~p~v~~vGgi~~~~~~~--~~l~~~l~~fl~~~-~~g~V~vS~GS~~~~~~~~ 313 (507)
T PHA03392 243 RNRVQLLFVNVHPVFDNN------RPVPPSVQYLGGLHLHKKPP--QPLDDYLEEFLNNS-TNGVVYVSFGSSIDTNDMD 313 (507)
T ss_pred HhCCcEEEEecCccccCC------CCCCCCeeeecccccCCCCC--CCCCHHHHHHHhcC-CCcEEEEECCCCCcCCCCC
Confidence 567789999999999987 24789999999998753211 25688999999985 5689999999986 478
Q ss_pred HHHHHHHHHHHHhCCCceEEEEeCCC
Q 019759 285 QELLHELAYGLEKSGLPFIWIIKNRP 310 (336)
Q Consensus 285 ~~~~~~ia~al~~~~~~~lW~~r~~~ 310 (336)
.++++++++||++++++|||++++..
T Consensus 314 ~~~~~~~l~a~~~l~~~viw~~~~~~ 339 (507)
T PHA03392 314 NEFLQMLLRTFKKLPYNVLWKYDGEV 339 (507)
T ss_pred HHHHHHHHHHHHhCCCeEEEEECCCc
Confidence 99999999999999999999998653
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=99.91 E-value=3.9e-27 Score=226.65 Aligned_cols=273 Identities=20% Similarity=0.240 Sum_probs=136.7
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCC-CCCCCCCCCC-C---
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLD-GLPEGAESTA-E--- 84 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~-~--- 84 (336)
||+++|. ++||+++|..|+++|++|||+||++++.... .+... ....+++..++.+... .......... .
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPS---KPSNIRFETYPDPYPEEEFEEIFPEFISKFFS 76 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T---------S-CCEEEE-----TT------TTHHHHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-ccccc---cccceeeEEEcCCcchHHHhhhhHHHHHHHhh
Confidence 6788884 7899999999999999999999999875321 11110 1135566665522111 1111100000 0
Q ss_pred -CCC--CchHHHHH---HHHHhh---------HHHHHhhhhcCCcEEEEcCCCcchHHHHHHcCCceEEEeccchHHHhh
Q 019759 85 -LPI--HKVPYLKK---AHDLLQ---------LPLTNFLQDSRVNWIIHDFISHWLPPVAAQLGVNSVFFSIYSAATLCF 149 (336)
Q Consensus 85 -~~~--~~~~~~~~---~~~~~~---------~~~~~ll~~~~~D~vv~D~~~~~~~~vA~~~~iP~v~~~~~~~~~~~~ 149 (336)
... .....+.. ...... +.+.+.+++.++|++|+|.+.+|+..+|+.+++|.+.+.+........
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~~~~ 156 (500)
T PF00201_consen 77 ESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMYDLS 156 (500)
T ss_dssp HHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCSCCT
T ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEeeccchhHHHHHHhcCCeEEEecccccchhh
Confidence 000 00000000 000001 112223344479999999999988899999999998765432221110
Q ss_pred cCCCCccccCCCCCCCCcccCCccccCC-----Ccccccccccccc------------ccCCCCch-hH---HHHHHHHh
Q 019759 150 TGPPSDVIAGRRQKPEDFTVVPEWIDFQ-----SNLAFKPYETLIN------------QDGMDDSV-SD---YLRAAFVL 208 (336)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~-----~~~~~~~~~~~~~------------~~~~~~~~-~~---~~~~~~~~ 208 (336)
.. . .+.+.+++++|.. +.+.+..|-.+++ ....+... +. .....+.+
T Consensus 157 ~~----~--------~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (500)
T PF00201_consen 157 SF----S--------GGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFRELL 224 (500)
T ss_dssp CC----T--------SCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCHHHH
T ss_pred hh----c--------cCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccccccHHHH
Confidence 00 0 0111223333321 1122211100100 00000000 00 00112233
Q ss_pred cCceEEEEccchhchHhHHHHHHhhhCCCeeeeeeccCCCCCCCCCCCccccccccccCCCCeEEEEEeCccc-cCCHHH
Q 019759 209 QDCRVVILRSCAEFEPDALRLLGKMLQKPVLPVGLLAPSLQDSAAGEHWPVLKDWLDSKENNSVVYAAFGTEM-TLSQEL 287 (336)
Q Consensus 209 ~~~~~~l~nt~~~le~~~~~~l~~~~~p~v~~VGpl~~~~~~~~~~~~~~~l~~wLd~~~~~~VVyvSfGS~~-~~~~~~ 287 (336)
.+++.+++|+...++.+. ..+|++.+|||++..++ .+++.+++.|+++.+++|||||||||++ .++.++
T Consensus 225 ~~~~l~l~ns~~~ld~pr------p~~p~v~~vGgl~~~~~----~~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~ 294 (500)
T PF00201_consen 225 SNASLVLINSHPSLDFPR------PLLPNVVEVGGLHIKPA----KPLPEELWNFLDSSGKKGVVYVSFGSIVSSMPEEK 294 (500)
T ss_dssp HHHHHCCSSTEEE----H------HHHCTSTTGCGC-S--------TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHHH
T ss_pred HHHHHHhhhccccCcCCc------chhhcccccCccccccc----cccccccchhhhccCCCCEEEEecCcccchhHHHH
Confidence 456678899999998763 34579999999988654 2568899999998668999999999987 477777
Q ss_pred HHHHHHHHHhCCCceEEEEeCC
Q 019759 288 LHELAYGLEKSGLPFIWIIKNR 309 (336)
Q Consensus 288 ~~~ia~al~~~~~~~lW~~r~~ 309 (336)
+++|++||++++++|||++++.
T Consensus 295 ~~~~~~~~~~~~~~~iW~~~~~ 316 (500)
T PF00201_consen 295 LKEIAEAFENLPQRFIWKYEGE 316 (500)
T ss_dssp HHHHHHHHHCSTTEEEEEETCS
T ss_pred HHHHHHHHhhCCCccccccccc
Confidence 9999999999999999999875
No 24
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=99.91 E-value=1.4e-24 Score=208.88 Aligned_cols=282 Identities=24% Similarity=0.302 Sum_probs=154.7
Q ss_pred ceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEE---EecCCCCC-CCCCCCCCCCC
Q 019759 8 KLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSY---IQLPLPQL-DGLPEGAESTA 83 (336)
Q Consensus 8 ~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~-~~~~~~~~~~~ 83 (336)
+.|++++++|++||++|+..+|+.|++|||+||++++.......... .. ...+.. ..+++... ++++.+.+...
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SK-SKSIKKINPPPFEFLTIPDGLPEGWEDDD 82 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-cc-ceeeeeeecChHHhhhhhhhhccchHHHH
Confidence 67899999999999999999999999999999999986544332211 00 001111 11111110 12222221100
Q ss_pred CCCCCchHHHHHHHHH-hhHHHHHhhhh--cCCcEEEEcCCCcchHHHHHHcC-CceEEEeccchHHHhhcCCCCccccC
Q 019759 84 ELPIHKVPYLKKAHDL-LQLPLTNFLQD--SRVNWIIHDFISHWLPPVAAQLG-VNSVFFSIYSAATLCFTGPPSDVIAG 159 (336)
Q Consensus 84 ~~~~~~~~~~~~~~~~-~~~~~~~ll~~--~~~D~vv~D~~~~~~~~vA~~~~-iP~v~~~~~~~~~~~~~~~~~~~~~~ 159 (336)
.........+...+.. +......+... .++|++|+|.|..|...+|.... ++...+++.++.......+.+.. +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~--~ 160 (496)
T KOG1192|consen 83 LDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLS--Y 160 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCccc--c
Confidence 0000001112222222 22222222222 23999999999888888887775 89888888777665544432211 1
Q ss_pred CCCCCCCcccCCccccCCCccccccc-------cc-cccccCCC-Cch-hHH-----------HHHHHHhcCceEEEEcc
Q 019759 160 RRQKPEDFTVVPEWIDFQSNLAFKPY-------ET-LINQDGMD-DSV-SDY-----------LRAAFVLQDCRVVILRS 218 (336)
Q Consensus 160 ~~~~~~~~~~~~~~~p~~~~~~~~~~-------~~-~~~~~~~~-~~~-~~~-----------~~~~~~~~~~~~~l~nt 218 (336)
.+...... .. ..+.+..+ .+ .+...... ... ... ....+...+++..++|+
T Consensus 161 ~p~~~~~~-------~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~ 232 (496)
T KOG1192|consen 161 VPSPFSLS-------SG-DDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNS 232 (496)
T ss_pred cCcccCcc-------cc-ccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEcc
Confidence 11000000 00 00111100 00 00000000 000 000 01112233444455555
Q ss_pred chhchHhHHHHHHhhhCCCeeeeeeccCCCCCCCCCCCccccccccccCCCC--eEEEEEeCccc---cCCHHHHHHHHH
Q 019759 219 CAEFEPDALRLLGKMLQKPVLPVGLLAPSLQDSAAGEHWPVLKDWLDSKENN--SVVYAAFGTEM---TLSQELLHELAY 293 (336)
Q Consensus 219 ~~~le~~~~~~l~~~~~p~v~~VGpl~~~~~~~~~~~~~~~l~~wLd~~~~~--~VVyvSfGS~~---~~~~~~~~~ia~ 293 (336)
...++.. .+...+++++|||+++... . .....+++|+|..++. |||||||||++ .+++++.++|+.
T Consensus 233 ~~~~~~~-----~~~~~~~v~~IG~l~~~~~-~---~~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~ 303 (496)
T KOG1192|consen 233 NPLLDFE-----PRPLLPKVIPIGPLHVKDS-K---QKSPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAK 303 (496)
T ss_pred CcccCCC-----CCCCCCCceEECcEEecCc-c---ccccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHH
Confidence 4444431 1223579999999998633 1 1122577888887666 99999999998 899999999999
Q ss_pred HHHhC-CCceEEEEeCCC
Q 019759 294 GLEKS-GLPFIWIIKNRP 310 (336)
Q Consensus 294 al~~~-~~~~lW~~r~~~ 310 (336)
||+++ +++|||++|..+
T Consensus 304 ~l~~~~~~~FiW~~~~~~ 321 (496)
T KOG1192|consen 304 ALESLQGVTFLWKYRPDD 321 (496)
T ss_pred HHHhCCCceEEEEecCCc
Confidence 99999 888999999864
No 25
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.83 E-value=4e-20 Score=172.65 Aligned_cols=258 Identities=16% Similarity=0.164 Sum_probs=144.1
Q ss_pred EcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCC-CCCCCCCchHH
Q 019759 14 FPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAES-TAELPIHKVPY 92 (336)
Q Consensus 14 ~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 92 (336)
+.+|++||++|++.||++|++|||+|||++++...+.+.+. ++.++.++... +. ....+. .......+...
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~------G~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~ 72 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA------GAEFVLYGSAL-PP-PDNPPENTEEEPIDIIEK 72 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc------CCEEEecCCcC-cc-ccccccccCcchHHHHHH
Confidence 35789999999999999999999999999998776666553 77888776311 00 001000 00000111122
Q ss_pred HHHHHHHhhHHHHHhhhhcCCcEEEEcCCCcchHHHHHHcCCceEEEeccchHHHhhcCCCCccccCCCCCCCCcccCCc
Q 019759 93 LKKAHDLLQLPLTNFLQDSRVNWIIHDFISHWLPPVAAQLGVNSVFFSIYSAATLCFTGPPSDVIAGRRQKPEDFTVVPE 172 (336)
Q Consensus 93 ~~~~~~~~~~~~~~ll~~~~~D~vv~D~~~~~~~~vA~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (336)
+..........+.+++++.+||+||+|.+..++..+|+++|||+|.+++..... ...+... .+. .........
T Consensus 73 ~~~~~~~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~----~~~~~~~--~~~-~~~~~~~~~ 145 (392)
T TIGR01426 73 LLDEAEDVLPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN----EEFEEMV--SPA-GEGSAEEGA 145 (392)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc----ccccccc--ccc-chhhhhhhc
Confidence 222222233445555666789999999998899999999999999886542211 0000000 000 000000000
Q ss_pred cccCCCcccccc--ccc-cccccCCCCchh--HHHHHHHHhcCceEEEEccchhchHhHHHHHHhhhCCCeeeeeeccCC
Q 019759 173 WIDFQSNLAFKP--YET-LINQDGMDDSVS--DYLRAAFVLQDCRVVILRSCAEFEPDALRLLGKMLQKPVLPVGLLAPS 247 (336)
Q Consensus 173 ~~p~~~~~~~~~--~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~nt~~~le~~~~~~l~~~~~p~v~~VGpl~~~ 247 (336)
..+. .... ..+ .+... .++. ...... ....+..+..+-..++++ ++.+++++.+|||+...
T Consensus 146 ~~~~----~~~~~~~~~~~~r~~---~gl~~~~~~~~~--~~~~~~~l~~~~~~l~~~-----~~~~~~~~~~~Gp~~~~ 211 (392)
T TIGR01426 146 IAER----GLAEYVARLSALLEE---HGITTPPVEFLA--APRRDLNLVYTPKAFQPA-----GETFDDSFTFVGPCIGD 211 (392)
T ss_pred cccc----hhHHHHHHHHHHHHH---hCCCCCCHHHHh--cCCcCcEEEeCChHhCCC-----ccccCCCeEEECCCCCC
Confidence 0000 0000 000 00000 0000 000000 011222344444444432 22356789999997753
Q ss_pred CCCCCCCCCccccccccccCCCCeEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEeCC
Q 019759 248 LQDSAAGEHWPVLKDWLDSKENNSVVYAAFGTEMTLSQELLHELAYGLEKSGLPFIWIIKNR 309 (336)
Q Consensus 248 ~~~~~~~~~~~~l~~wLd~~~~~~VVyvSfGS~~~~~~~~~~~ia~al~~~~~~~lW~~r~~ 309 (336)
.. +..+|++..+++++|||||||+.....+.++++++++++.+++++|.....
T Consensus 212 ~~---------~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~ 264 (392)
T TIGR01426 212 RK---------EDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRG 264 (392)
T ss_pred cc---------ccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 22 233487766778999999999877667788999999999999999987544
No 26
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.80 E-value=1.6e-19 Score=169.05 Aligned_cols=259 Identities=16% Similarity=0.109 Sum_probs=141.3
Q ss_pred eEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCC----C
Q 019759 9 LHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTA----E 84 (336)
Q Consensus 9 ~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~ 84 (336)
.||+|++.|+.||++|++.||++|++|||+|||++++.....+.+ .+++++.++... +.......... .
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~------~G~~~~~~~~~~-~~~~~~~~~~~~~~~~ 73 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA------AGLEFVPVGGDP-DELLASPERNAGLLLL 73 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHH------cCCceeeCCCCH-HHHHhhhhhccccccc
Confidence 489999999999999999999999999999999999765544444 377887766210 00000000000 0
Q ss_pred CCC---CchHHHHHHHHHhhHHHHHhhhhcCCcEEEEcCCCcchHHHHHHcCCceEEEeccchHHHhhcCCCCccccCCC
Q 019759 85 LPI---HKVPYLKKAHDLLQLPLTNFLQDSRVNWIIHDFISHWLPPVAAQLGVNSVFFSIYSAATLCFTGPPSDVIAGRR 161 (336)
Q Consensus 85 ~~~---~~~~~~~~~~~~~~~~~~~ll~~~~~D~vv~D~~~~~~~~vA~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~ 161 (336)
... .....+..........+.+.+++.++|+||+|.+..++..+|+++|||+|.+++++..... ..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~-~~---------- 142 (401)
T cd03784 74 GPGLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTS-AF---------- 142 (401)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccc-cC----------
Confidence 000 0111122222223333444455568999999998888889999999999999875422100 00
Q ss_pred CCCCCcccCCccccCCCccccccccccccccCCCCchhHHHHHHHHhc---------CceEEEE---ccchhchHhHHHH
Q 019759 162 QKPEDFTVVPEWIDFQSNLAFKPYETLINQDGMDDSVSDYLRAAFVLQ---------DCRVVIL---RSCAEFEPDALRL 229 (336)
Q Consensus 162 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~---nt~~~le~~~~~~ 229 (336)
++.. ...............+. ............... ..+..+. .++....+
T Consensus 143 --------~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~----- 205 (401)
T cd03784 143 --------PPPL-GRANLRLYALLEAELWQ---DLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPPPP----- 205 (401)
T ss_pred --------CCcc-chHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCCCCC-----
Confidence 0000 00000000000000000 000001111111000 0111111 12222111
Q ss_pred HHhhhCCCeeeee-eccCCCCCCCCCCCccccccccccCCCCeEEEEEeCcccc-CCHHHHHHHHHHHHhCCCceEEEEe
Q 019759 230 LGKMLQKPVLPVG-LLAPSLQDSAAGEHWPVLKDWLDSKENNSVVYAAFGTEMT-LSQELLHELAYGLEKSGLPFIWIIK 307 (336)
Q Consensus 230 l~~~~~p~v~~VG-pl~~~~~~~~~~~~~~~l~~wLd~~~~~~VVyvSfGS~~~-~~~~~~~~ia~al~~~~~~~lW~~r 307 (336)
..+++...+| ++...+. . ...+.++..|+++ ++++|||+|||+.+ .+.+..+.+.+++++.+.++||+..
T Consensus 206 ---~~~~~~~~~g~~~~~~~~-~--~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g 277 (401)
T cd03784 206 ---DWPRFDLVTGYGFRDVPY-N--GPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLG 277 (401)
T ss_pred ---CccccCcEeCCCCCCCCC-C--CCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 1234555664 4433222 1 1235678889886 57899999999986 4456778899999999999999998
Q ss_pred CCC
Q 019759 308 NRP 310 (336)
Q Consensus 308 ~~~ 310 (336)
...
T Consensus 278 ~~~ 280 (401)
T cd03784 278 WGG 280 (401)
T ss_pred Ccc
Confidence 764
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=99.42 E-value=4.8e-13 Score=124.57 Aligned_cols=123 Identities=20% Similarity=0.240 Sum_probs=79.4
Q ss_pred eEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCCC
Q 019759 9 LHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPIH 88 (336)
Q Consensus 9 ~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (336)
.||+++..|..||++|.++|+++|.++||+|+|++++...+.+.++ ++.|..++..... ....+........
T Consensus 2 mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a------g~~f~~~~~~~~~--~~~~~~~~~~~~~ 73 (406)
T COG1819 2 MKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA------GLAFVAYPIRDSE--LATEDGKFAGVKS 73 (406)
T ss_pred ceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh------CcceeeccccCCh--hhhhhhhhhccch
Confidence 5899999999999999999999999999999999998877766664 5666666532110 0000000000000
Q ss_pred chHHHHHHHHHhhHHHHHhhhhcCCcEEEEcCCCcchHHHHHHcCCceEEEec
Q 019759 89 KVPYLKKAHDLLQLPLTNFLQDSRVNWIIHDFISHWLPPVAAQLGVNSVFFSI 141 (336)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~ll~~~~~D~vv~D~~~~~~~~vA~~~~iP~v~~~~ 141 (336)
+.. ...........+.+++.+..+|+++.|.-.... .+++..++|++....
T Consensus 74 ~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 124 (406)
T COG1819 74 FRR-LLQQFKKLIRELLELLRELEPDLVVDDARLSLG-LAARLLGIPVVGINV 124 (406)
T ss_pred hHH-HhhhhhhhhHHHHHHHHhcchhhhhcchhhhhh-hhhhhcccchhhhhh
Confidence 000 111111223345556677789999998876555 788888899877543
No 28
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.08 E-value=2.2e-11 Score=96.65 Aligned_cols=121 Identities=23% Similarity=0.328 Sum_probs=74.4
Q ss_pred EEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCCCch
Q 019759 11 IAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPIHKV 90 (336)
Q Consensus 11 il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (336)
|+|++.++.||++|++.|+++|.+|||+|++++++...+.+.+ .++.++.++.. ..++..... .....
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~------~Gl~~~~~~~~--~~~~~~~~~----~~~~~ 68 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEA------AGLEFVPIPGD--SRLPRSLEP----LANLR 68 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHH------TT-EEEESSSC--GGGGHHHHH----HHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccc------cCceEEEecCC--cCcCcccch----hhhhh
Confidence 6899999999999999999999999999999998777666644 38999988721 011100000 00000
Q ss_pred HHHH--HHHHHhhHHHHHhhhh--------cCCcEEEEcCCCcchHHHHHHcCCceEEEeccc
Q 019759 91 PYLK--KAHDLLQLPLTNFLQD--------SRVNWIIHDFISHWLPPVAAQLGVNSVFFSIYS 143 (336)
Q Consensus 91 ~~~~--~~~~~~~~~~~~ll~~--------~~~D~vv~D~~~~~~~~vA~~~~iP~v~~~~~~ 143 (336)
.... .......+.+.+...+ ...|+++.+.....+..+|+++++|.+.....+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p 131 (139)
T PF03033_consen 69 RLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFP 131 (139)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSG
T ss_pred hHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCC
Confidence 0000 0111122222221111 146888888877778899999999999876544
No 29
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=98.34 E-value=6.6e-05 Score=69.09 Aligned_cols=114 Identities=13% Similarity=0.160 Sum_probs=71.5
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCC--CCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCC
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDR--LPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPI 87 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (336)
+|++..-..-||+.|.++++++|.++||+|+|+++....+. +++ .++.+..++. .++... ..
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~------~g~~~~~~~~---~~l~~~------~~- 66 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEK------ENIPYYSISS---GKLRRY------FD- 66 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcc------cCCcEEEEec---cCcCCC------ch-
Confidence 57777777779999999999999999999999987544321 111 2566666651 122100 00
Q ss_pred CchHHHHHHHHHhh--HHHHHhhhhcCCcEEEEcCCCcc--hHHHHHHcCCceEEEec
Q 019759 88 HKVPYLKKAHDLLQ--LPLTNFLQDSRVNWIIHDFISHW--LPPVAAQLGVNSVFFSI 141 (336)
Q Consensus 88 ~~~~~~~~~~~~~~--~~~~~ll~~~~~D~vv~D~~~~~--~~~vA~~~~iP~v~~~~ 141 (336)
...+........ -...+++++.+||+||...-+.. +...|+.+++|++..-.
T Consensus 67 --~~~~~~~~~~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~ 122 (352)
T PRK12446 67 --LKNIKDPFLVMKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHES 122 (352)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECC
Confidence 111111111111 12335678889999999775443 45788899999877543
No 30
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.31 E-value=4.7e-06 Score=75.55 Aligned_cols=115 Identities=19% Similarity=0.266 Sum_probs=67.7
Q ss_pred EEEEEcC-CCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCCC
Q 019759 10 HIAMFPW-LAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPIH 88 (336)
Q Consensus 10 ~il~~~~-p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (336)
||++... -|.||+.-.+.|+++| |||+|+|++.....+.+.+ .+.+..++.. ... ..+. .+ .
T Consensus 2 kIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~-------~~~~~~~~~~---~~~-~~~~--~~--~ 64 (318)
T PF13528_consen 2 KILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP-------RFPVREIPGL---GPI-QENG--RL--D 64 (318)
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc-------ccCEEEccCc---eEe-ccCC--cc--c
Confidence 5666654 5889999999999999 6999999987533322221 1234434310 000 0000 00 0
Q ss_pred chHHHHHH------HHHhhHHHHHhhhhcCCcEEEEcCCCcchHHHHHHcCCceEEEecc
Q 019759 89 KVPYLKKA------HDLLQLPLTNFLQDSRVNWIIHDFISHWLPPVAAQLGVNSVFFSIY 142 (336)
Q Consensus 89 ~~~~~~~~------~~~~~~~~~~ll~~~~~D~vv~D~~~~~~~~vA~~~~iP~v~~~~~ 142 (336)
....+... .........+.+++.+||+||+|.. +.+...|+..|+|++.+...
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDlVIsD~~-~~~~~aa~~~giP~i~i~~~ 123 (318)
T PF13528_consen 65 RWKTVRNNIRWLARLARRIRREIRWLREFRPDLVISDFY-PLAALAARRAGIPVIVISNQ 123 (318)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEcCh-HHHHHHHHhcCCCEEEEEeh
Confidence 01111111 1122233445667779999999953 44668889999999988664
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.10 E-value=1.3e-05 Score=72.93 Aligned_cols=115 Identities=18% Similarity=0.211 Sum_probs=65.7
Q ss_pred EEEE-cCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeE-EEecCCCCCCCCCCCCCCCCCCCCC
Q 019759 11 IAMF-PWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLS-YIQLPLPQLDGLPEGAESTAELPIH 88 (336)
Q Consensus 11 il~~-~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (336)
|++. ...|.||+.|.+.++++|.+ ||+|+++++......++.. ++. +...|...... ..+. . .
T Consensus 2 il~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~------~~~~~~~~p~~~~~~-~~~~-----~--~ 66 (321)
T TIGR00661 2 ILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKY------GFKVFETFPGIKLKG-EDGK-----V--N 66 (321)
T ss_pred EEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhh------cCcceeccCCceEee-cCCc-----C--c
Confidence 4554 45667999999999999999 9999999865422222221 222 22222000000 0010 0 0
Q ss_pred chHHHH---HHHHHhhHHHHHhhhhcCCcEEEEcCCCcchHHHHHHcCCceEEEec
Q 019759 89 KVPYLK---KAHDLLQLPLTNFLQDSRVNWIIHDFISHWLPPVAAQLGVNSVFFSI 141 (336)
Q Consensus 89 ~~~~~~---~~~~~~~~~~~~ll~~~~~D~vv~D~~~~~~~~vA~~~~iP~v~~~~ 141 (336)
....+. ...........+++++.+||+||+| +.+.+..+|+.++||.+.+.-
T Consensus 67 ~~~~l~~~~~~~~~~~~~~~~~l~~~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~ 121 (321)
T TIGR00661 67 IVKTLRNKEYSPKKAIRREINIIREYNPDLIISD-FEYSTVVAAKLLKIPVICISN 121 (321)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCEEEEC-CchHHHHHHHhcCCCEEEEec
Confidence 111111 0000111223457777899999999 555567899999999997754
No 32
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.33 E-value=0.0046 Score=56.82 Aligned_cols=118 Identities=19% Similarity=0.213 Sum_probs=72.9
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhCCC-eEEEEeCCCCCC-CCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCC
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEKGH-HVSYISTPKNID-RLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPI 87 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~rGh-~VT~~t~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (336)
+|++....+-||+.|-++|+++|.+||+ +|.++.+....+ .+.. ..++.++.++. .++.... .
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~-----~~~~~~~~I~~---~~~~~~~----~--- 66 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVK-----QYGIEFELIPS---GGLRRKG----S--- 66 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeecc-----ccCceEEEEec---ccccccC----c---
Confidence 5677777888999999999999999999 577764433322 1111 13677777662 1221100 0
Q ss_pred CchHHHHHHHH--HhhHHHHHhhhhcCCcEEEEcCCCcc--hHHHHHHcCCceEEEeccch
Q 019759 88 HKVPYLKKAHD--LLQLPLTNFLQDSRVNWIIHDFISHW--LPPVAAQLGVNSVFFSIYSA 144 (336)
Q Consensus 88 ~~~~~~~~~~~--~~~~~~~~ll~~~~~D~vv~D~~~~~--~~~vA~~~~iP~v~~~~~~~ 144 (336)
...+...+. .......+++++.+||+|+.=.-++. +...|..+++|.+..-....
T Consensus 67 --~~~~~~~~~~~~~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~ 125 (357)
T COG0707 67 --LKLLKAPFKLLKGVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAV 125 (357)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCC
Confidence 011111111 12234566888899999999664444 44677899999998765443
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.24 E-value=0.0052 Score=56.22 Aligned_cols=114 Identities=19% Similarity=0.214 Sum_probs=68.9
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCCCc
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPIHK 89 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (336)
+|++......||......+++.|.++||+|++++...... . ... ...++++..+++. ++... ..
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~-~-~~~--~~~~~~~~~~~~~---~~~~~---------~~ 64 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLE-A-RLV--PKAGIPLHTIPVG---GLRRK---------GS 64 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcch-h-hcc--cccCCceEEEEec---CcCCC---------Ch
Confidence 4777777778999999999999999999999998753211 1 110 0124666666531 11100 00
Q ss_pred hHHHHHHHH--HhhHHHHHhhhhcCCcEEEEcCCC-cc-hHHHHHHcCCceEEE
Q 019759 90 VPYLKKAHD--LLQLPLTNFLQDSRVNWIIHDFIS-HW-LPPVAAQLGVNSVFF 139 (336)
Q Consensus 90 ~~~~~~~~~--~~~~~~~~ll~~~~~D~vv~D~~~-~~-~~~vA~~~~iP~v~~ 139 (336)
...+..... .....+.+++++.+||+|++..-. .+ +..+|...++|++..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~ 118 (350)
T cd03785 65 LKKLKAPFKLLKGVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIH 118 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEE
Confidence 111111111 122345567777899999987632 22 346678889999864
No 34
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=97.20 E-value=0.0075 Score=55.50 Aligned_cols=113 Identities=19% Similarity=0.198 Sum_probs=69.2
Q ss_pred eEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCC--CCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCC
Q 019759 9 LHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNI--DRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELP 86 (336)
Q Consensus 9 ~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 86 (336)
.+|+|+.....||...+..|+++|.++||+|++++.+... ..... .+++++.++.+ ++... .
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~------~g~~~~~~~~~---~~~~~-----~-- 65 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPK------AGIEFHFIPSG---GLRRK-----G-- 65 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhcccc------CCCcEEEEecc---CcCCC-----C--
Confidence 4688888777799999999999999999999999875421 11111 25566655521 11100 0
Q ss_pred CCchHHHHHHH--HHhhHHHHHhhhhcCCcEEEEcCCC-cc-hHHHHHHcCCceEEE
Q 019759 87 IHKVPYLKKAH--DLLQLPLTNFLQDSRVNWIIHDFIS-HW-LPPVAAQLGVNSVFF 139 (336)
Q Consensus 87 ~~~~~~~~~~~--~~~~~~~~~ll~~~~~D~vv~D~~~-~~-~~~vA~~~~iP~v~~ 139 (336)
....+.... -.....+.+++++.+||+|++.... .+ +..+++..++|+|..
T Consensus 66 --~~~~l~~~~~~~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~ 120 (357)
T PRK00726 66 --SLANLKAPFKLLKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIH 120 (357)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEE
Confidence 011111111 1122345567777899999999733 33 335567788999865
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=97.18 E-value=0.0094 Score=54.49 Aligned_cols=116 Identities=16% Similarity=0.148 Sum_probs=68.8
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCCCc
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPIHK 89 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (336)
||+|+.....||+.....|+++|.++||+|++++.+.... .... ...+++++.++.. .+. +. ... ..
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~--~~~~--~~~g~~~~~i~~~---~~~-~~----~~~-~~ 68 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLE--KRLV--PKAGIEFYFIPVG---GLR-RK----GSF-RL 68 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcch--hccc--ccCCCceEEEecc---CcC-CC----ChH-HH
Confidence 6888888888999977899999999999999998643211 0100 0135666665521 110 00 000 01
Q ss_pred hHHHHHHHHHhhHHHHHhhhhcCCcEEEEcCCCcc--hHHHHHHcCCceEEE
Q 019759 90 VPYLKKAHDLLQLPLTNFLQDSRVNWIIHDFISHW--LPPVAAQLGVNSVFF 139 (336)
Q Consensus 90 ~~~~~~~~~~~~~~~~~ll~~~~~D~vv~D~~~~~--~~~vA~~~~iP~v~~ 139 (336)
........ .....+.+++++.+||+|++..-... +..+++..++|++.+
T Consensus 69 l~~~~~~~-~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~ 119 (348)
T TIGR01133 69 IKTPLKLL-KAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFHH 119 (348)
T ss_pred HHHHHHHH-HHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEEE
Confidence 11111111 12234566778889999999864332 334677888999753
No 36
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=96.66 E-value=0.045 Score=51.13 Aligned_cols=115 Identities=15% Similarity=0.104 Sum_probs=60.5
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCCCc
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPIHK 89 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (336)
+|+|+.-...| ++.+||++|+++||+|+++|....... . .+++.+.++... . ... .........
T Consensus 1 ~il~~~~~~p~---~~~~la~~L~~~G~~v~~~~~~~~~~~-~-------~~v~~~~~~~~~-~--~~~--~~~~~~~~~ 64 (396)
T cd03818 1 RILFVHQNFPG---QFRHLAPALAAQGHEVVFLTEPNAAPP-P-------GGVRVVRYRPPR-G--PTS--GTHPYLREF 64 (396)
T ss_pred CEEEECCCCch---hHHHHHHHHHHCCCEEEEEecCCCCCC-C-------CCeeEEEecCCC-C--CCC--CCCccchhH
Confidence 36666532222 378899999999999999987543211 1 146666655210 0 000 000000011
Q ss_pred hHHHHHHHHHhhHHHHHhh-hhcCCcEEEEcCCCcchHHHHHHcC-CceEEEec
Q 019759 90 VPYLKKAHDLLQLPLTNFL-QDSRVNWIIHDFISHWLPPVAAQLG-VNSVFFSI 141 (336)
Q Consensus 90 ~~~~~~~~~~~~~~~~~ll-~~~~~D~vv~D~~~~~~~~vA~~~~-iP~v~~~~ 141 (336)
...... ...+...+..+. ++.+||+|++......+..+.+.+. +|.|.+..
T Consensus 65 ~~~~~~-~~~~~~~~~~~~~~~~~pdvi~~h~~~~~~~~l~~~~~~~~~v~~~~ 117 (396)
T cd03818 65 EEAVLR-GQAVARALLALRAKGFRPDVIVAHPGWGETLFLKDVWPDAPLIGYFE 117 (396)
T ss_pred HHHHHH-HHHHHHHHHHHHhcCCCCCEEEECCccchhhhHHHhCCCCCEEEEEe
Confidence 111111 111223333332 3357999999986666666666654 88887653
No 37
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=96.45 E-value=0.02 Score=53.41 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=64.7
Q ss_pred eEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCCC
Q 019759 9 LHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPIH 88 (336)
Q Consensus 9 ~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (336)
++|+|......||+.|- +|+++|.++|++++|+..... .+++.+ ....+.+..++. -++. .
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g--~~~~~~~~~l~v---~G~~-----------~ 66 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEG--CEVLYSMEELSV---MGLR-----------E 66 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCc--CccccChHHhhh---ccHH-----------H
Confidence 46888888888999999 999999999999999975321 222221 001122222220 0110 0
Q ss_pred chHHHHHHHHHhhHHHHHhhhhcCCcEEEEcCCCc-c--hHHHHHHcCCceEEE
Q 019759 89 KVPYLKKAHDLLQLPLTNFLQDSRVNWIIHDFISH-W--LPPVAAQLGVNSVFF 139 (336)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~ll~~~~~D~vv~D~~~~-~--~~~vA~~~~iP~v~~ 139 (336)
.+..+.... .....+.+++++.+||+||.=-... . ....|+.+|+|++.+
T Consensus 67 ~l~~~~~~~-~~~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 67 VLGRLGRLL-KIRKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYY 119 (385)
T ss_pred HHHHHHHHH-HHHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEE
Confidence 011111111 1233566777888999888743322 1 223788999999987
No 38
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=96.36 E-value=0.083 Score=49.81 Aligned_cols=121 Identities=12% Similarity=-0.042 Sum_probs=66.1
Q ss_pred eEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCCC
Q 019759 9 LHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPIH 88 (336)
Q Consensus 9 ~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (336)
.+|++++....|+-.=+..++++|+++||+||+++....... ... ....++.++.++.. . .... ....
T Consensus 4 ~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~-~~~--~~~~~v~~~~~~~~---~--~~~~----~~~~ 71 (415)
T cd03816 4 KRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPH-DEI--LSNPNITIHPLPPP---P--QRLN----KLPF 71 (415)
T ss_pred cEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCC-HHH--hcCCCEEEEECCCC---c--cccc----cchH
Confidence 467777777777777788899999999999999986432211 110 01247777776521 0 0000 0001
Q ss_pred chHHHHHHHHHhhHHHHHhhhhcCCcEEEEcC-CCc--c--hHHHHHHcCCceEEEec
Q 019759 89 KVPYLKKAHDLLQLPLTNFLQDSRVNWIIHDF-ISH--W--LPPVAAQLGVNSVFFSI 141 (336)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~ll~~~~~D~vv~D~-~~~--~--~~~vA~~~~iP~v~~~~ 141 (336)
...++..........+..+++..++|+|++.. ... . +..+++..++|+|..+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h 129 (415)
T cd03816 72 LLFAPLKVLWQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWH 129 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcC
Confidence 11222222222223333345556899999753 211 1 22345667899887544
No 39
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=96.25 E-value=0.03 Score=49.76 Aligned_cols=93 Identities=22% Similarity=0.334 Sum_probs=57.8
Q ss_pred CCccchHHHHHHHHHHHhCCCeEEEEeCCCCCC---CCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCCCchHHH
Q 019759 17 LAYGHIMPFFQVAMFLAEKGHHVSYISTPKNID---RLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPIHKVPYL 93 (336)
Q Consensus 17 p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (336)
-|.||+.=.+.||++|.++||+|+|++...... .+.+ .++.+..++ +.- +.
T Consensus 12 iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~------~g~~v~~~~----~~~--~~-------------- 65 (279)
T TIGR03590 12 IGLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLS------AGFPVYELP----DES--SR-------------- 65 (279)
T ss_pred ccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHH------cCCeEEEec----CCC--ch--------------
Confidence 567999999999999999999999998753321 1212 255665554 110 00
Q ss_pred HHHHHHhhHHHHHhhhhcCCcEEEEcCCCcchH--HHHHHcCCceEEE
Q 019759 94 KKAHDLLQLPLTNFLQDSRVNWIIHDFISHWLP--PVAAQLGVNSVFF 139 (336)
Q Consensus 94 ~~~~~~~~~~~~~ll~~~~~D~vv~D~~~~~~~--~vA~~~~iP~v~~ 139 (336)
.+ -...+.+++++.++|+||+|....... ...+..+.+.+.+
T Consensus 66 ~~----d~~~~~~~l~~~~~d~vV~D~y~~~~~~~~~~k~~~~~l~~i 109 (279)
T TIGR03590 66 YD----DALELINLLEEEKFDILIVDHYGLDADWEKLIKEFGRKILVI 109 (279)
T ss_pred hh----hHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHhCCeEEEE
Confidence 00 012355666777899999999654432 3334445555554
No 40
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=96.22 E-value=0.0072 Score=47.96 Aligned_cols=95 Identities=19% Similarity=0.251 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHhhH
Q 019759 23 MPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPIHKVPYLKKAHDLLQL 102 (336)
Q Consensus 23 ~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (336)
.-+..|+++|+++||+||++++......-.. ...+++++.++.+... . .......+ .
T Consensus 5 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~--------~~~~~~~~--------~ 61 (160)
T PF13579_consen 5 RYVRELARALAARGHEVTVVTPQPDPEDDEE----EEDGVRVHRLPLPRRP---W--------PLRLLRFL--------R 61 (160)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE---GGG-SE----EETTEEEEEE--S-SS---S--------GGGHCCHH--------H
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCccccc----ccCCceEEeccCCccc---h--------hhhhHHHH--------H
Confidence 3468999999999999999997544321111 0146777777643111 0 00000111 2
Q ss_pred HHHHhh--hhcCCcEEEEcCCCcc-hHHHHH-HcCCceEEEe
Q 019759 103 PLTNFL--QDSRVNWIIHDFISHW-LPPVAA-QLGVNSVFFS 140 (336)
Q Consensus 103 ~~~~ll--~~~~~D~vv~D~~~~~-~~~vA~-~~~iP~v~~~ 140 (336)
.+.+++ ++.+||+|.+...... +..+++ ..++|+|...
T Consensus 62 ~~~~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 62 RLRRLLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp HHHHHCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred HHHHHHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 344444 5568999998884333 335555 8899998765
No 41
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=96.20 E-value=0.059 Score=48.45 Aligned_cols=105 Identities=17% Similarity=0.189 Sum_probs=63.2
Q ss_pred eEEEEEc--CCCccchHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCC
Q 019759 9 LHIAMFP--WLAYGHIMPFFQVAMFLAEK--GHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAE 84 (336)
Q Consensus 9 ~~il~~~--~p~~gH~~p~l~la~~La~r--Gh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 84 (336)
.+|+|.. ..|-||+-=.+.+|+.|++. |.+|+++|+-....-..- ..++.++.+|-- .....|.....+
T Consensus 10 ~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~-----~~gVd~V~LPsl--~k~~~G~~~~~d 82 (400)
T COG4671 10 PRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG-----PAGVDFVKLPSL--IKGDNGEYGLVD 82 (400)
T ss_pred ceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC-----cccCceEecCce--EecCCCceeeee
Confidence 4888888 47789999999999999997 999999998544432221 248899988721 111112111111
Q ss_pred CCCCchHHHHHHHHHhhHHHHHhhhhcCCcEEEEcCCCcc
Q 019759 85 LPIHKVPYLKKAHDLLQLPLTNFLQDSRVNWIIHDFISHW 124 (336)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~vv~D~~~~~ 124 (336)
......+.. ..-+.-+..-.++.+||++|+|-+-..
T Consensus 83 ~~~~l~e~~----~~Rs~lil~t~~~fkPDi~IVd~~P~G 118 (400)
T COG4671 83 LDGDLEETK----KLRSQLILSTAETFKPDIFIVDKFPFG 118 (400)
T ss_pred cCCCHHHHH----HHHHHHHHHHHHhcCCCEEEEeccccc
Confidence 111111111 111222333445669999999987544
No 42
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=95.81 E-value=0.1 Score=47.22 Aligned_cols=99 Identities=17% Similarity=0.172 Sum_probs=56.2
Q ss_pred ccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 019759 19 YGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPIHKVPYLKKAHD 98 (336)
Q Consensus 19 ~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (336)
.|+...+..|+++|+++||+|++++........ .. .....+.....+ ... ......
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~-~~----~~~~~~~~~~~~---~~~-------~~~~~~--------- 69 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGPFRESE-GP----ARVVPVPSVPLP---GYP-------EIRLAL--------- 69 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCchhhcc-CC----CCceeecccccC---ccc-------ceEecc---------
Confidence 589999999999999999999999975432111 10 011122111110 000 000000
Q ss_pred HhhHHHHHhhhhcCCcEEEEcCCCcc---hHHHHHHcCCceEEEec
Q 019759 99 LLQLPLTNFLQDSRVNWIIHDFISHW---LPPVAAQLGVNSVFFSI 141 (336)
Q Consensus 99 ~~~~~~~~ll~~~~~D~vv~D~~~~~---~~~vA~~~~iP~v~~~~ 141 (336)
.....+.+.+++.+||+|++...... +..++++.++|++....
T Consensus 70 ~~~~~~~~~~~~~~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 115 (364)
T cd03814 70 PPRRRVRRLLDAFAPDVVHIATPGPLGLAALRAARRLGIPVVTSYH 115 (364)
T ss_pred cchhhHHHHHHhcCCCEEEEeccchhhHHHHHHHHHcCCCEEEEEe
Confidence 01123444556678999987753322 34677889999887554
No 43
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=95.76 E-value=0.19 Score=39.19 Aligned_cols=101 Identities=17% Similarity=0.249 Sum_probs=62.5
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCCCc
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPIHK 89 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (336)
+|+++......| ...+++.|.++||+|++++.......... ..+++++.++.+ . . . .
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~-----~~~i~~~~~~~~----~----k---~----~ 57 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI-----IEGIKVIRLPSP----R----K---S----P 57 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH-----hCCeEEEEecCC----C----C---c----c
Confidence 366666555455 56889999999999999998443221111 247777776521 0 0 0 1
Q ss_pred hHHHHHHHHHhhHHHHHhhhhcCCcEEEEcCCCcc-hH--HHHHHcC-CceEEE
Q 019759 90 VPYLKKAHDLLQLPLTNFLQDSRVNWIIHDFISHW-LP--PVAAQLG-VNSVFF 139 (336)
Q Consensus 90 ~~~~~~~~~~~~~~~~~ll~~~~~D~vv~D~~~~~-~~--~vA~~~~-iP~v~~ 139 (336)
..++. .. .+.+++++.+||+|.+-...+. .. .+++..+ +|+|..
T Consensus 58 ~~~~~-----~~-~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~ 105 (139)
T PF13477_consen 58 LNYIK-----YF-RLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYT 105 (139)
T ss_pred HHHHH-----HH-HHHHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEE
Confidence 12221 12 5677888889999988887653 22 3456777 787743
No 44
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=95.73 E-value=0.18 Score=48.25 Aligned_cols=112 Identities=17% Similarity=0.091 Sum_probs=61.5
Q ss_pred CCceEEEEEcCCC-----ccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCC
Q 019759 6 RQKLHIAMFPWLA-----YGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAE 80 (336)
Q Consensus 6 ~~~~~il~~~~p~-----~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 80 (336)
.++.||+++..+. .|=-+-+..++++|.++||+|+++++..... ... .++..+.... ...+.. .
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~--~~~-----~g~~v~~~~~---~~~~~~-~ 124 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVP--QEF-----HGAKVIGSWS---FPCPFY-Q 124 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCC--ccc-----cCceeeccCC---cCCccC-C
Confidence 5678888885322 2334678999999999999999999754321 110 2333332210 000100 0
Q ss_pred CCCCCCCCchHHHHHHHHHhhHHHHHhhhhcCCcEEEEcCCC--cc-hHHHHHHcCCceEEEe
Q 019759 81 STAELPIHKVPYLKKAHDLLQLPLTNFLQDSRVNWIIHDFIS--HW-LPPVAAQLGVNSVFFS 140 (336)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~vv~D~~~--~~-~~~vA~~~~iP~v~~~ 140 (336)
.... .+ .....+.+++++.+||+|.+.... .+ +..+|+..++|+|...
T Consensus 125 ---~~~~---~~------~~~~~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~~~ip~V~~~ 175 (465)
T PLN02871 125 ---KVPL---SL------ALSPRIISEVARFKPDLIHASSPGIMVFGALFYAKLLCVPLVMSY 175 (465)
T ss_pred ---Ccee---ec------cCCHHHHHHHHhCCCCEEEECCCchhHHHHHHHHHHhCCCEEEEE
Confidence 0000 00 011234556677799999765422 22 3356788999998743
No 45
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=95.71 E-value=0.13 Score=47.70 Aligned_cols=107 Identities=23% Similarity=0.297 Sum_probs=59.2
Q ss_pred ccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 019759 19 YGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPIHKVPYLKKAHD 98 (336)
Q Consensus 19 ~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (336)
-|+-..+..|+++|+++||+|++++........... ....++.++.++......... . ....++....
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~- 88 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRIDDALPPIV--ELAPGVRVVRVPAGPAEYLPK------E---ELWPYLDEFA- 88 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCCcccCCcc--ccccceEEEecccccccCCCh------h---hcchhHHHHH-
Confidence 378889999999999999999999864332211100 112466666655211000000 0 0111111111
Q ss_pred HhhHHHHHhhhhc--CCcEEEEcCCCcc--hHHHHHHcCCceEEEe
Q 019759 99 LLQLPLTNFLQDS--RVNWIIHDFISHW--LPPVAAQLGVNSVFFS 140 (336)
Q Consensus 99 ~~~~~~~~ll~~~--~~D~vv~D~~~~~--~~~vA~~~~iP~v~~~ 140 (336)
..+.+.++.. +||+|++...... +..+++.+++|+|...
T Consensus 89 ---~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~ 131 (398)
T cd03800 89 ---DDLLRFLRREGGRPDLIHAHYWDSGLVALLLARRLGIPLVHTF 131 (398)
T ss_pred ---HHHHHHHHhcCCCccEEEEecCccchHHHHHHhhcCCceEEEe
Confidence 2233334444 8999998864322 3467888999987643
No 46
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=95.68 E-value=0.2 Score=45.19 Aligned_cols=111 Identities=16% Similarity=0.153 Sum_probs=59.3
Q ss_pred ccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 019759 19 YGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPIHKVPYLKKAHD 98 (336)
Q Consensus 19 ~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (336)
.|+-.-...++++|+++||+|+++++.......... ........... .... .. ...............
T Consensus 15 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~----~~~~~~~~~~~---~~~~--~~---~~~~~~~~~~~~~~~ 82 (359)
T cd03823 15 GGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKE----VIGVVVYGRPI---DEVL--RS---ALPRDLFHLSDYDNP 82 (359)
T ss_pred cchHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccc----cccceeecccc---cccc--CC---CchhhhhHHHhccCH
Confidence 488889999999999999999999875432211110 01111111110 0000 00 000000001111111
Q ss_pred HhhHHHHHhhhhcCCcEEEEcCCCcch---HHHHHHcCCceEEEec
Q 019759 99 LLQLPLTNFLQDSRVNWIIHDFISHWL---PPVAAQLGVNSVFFSI 141 (336)
Q Consensus 99 ~~~~~~~~ll~~~~~D~vv~D~~~~~~---~~vA~~~~iP~v~~~~ 141 (336)
.....+.+++++.++|+|++....... ...+++.++|+|....
T Consensus 83 ~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h 128 (359)
T cd03823 83 AVVAEFARLLEDFRPDVVHFHHLQGLGVSILRAARDRGIPIVLTLH 128 (359)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccchHHHHHHHHHhcCCCEEEEEe
Confidence 234456677777899999988754432 2457788999887543
No 47
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=95.64 E-value=0.15 Score=46.80 Aligned_cols=110 Identities=15% Similarity=0.240 Sum_probs=60.6
Q ss_pred EEEEEcCCC-ccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCCC
Q 019759 10 HIAMFPWLA-YGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPIH 88 (336)
Q Consensus 10 ~il~~~~p~-~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (336)
+|+++.+|. -|.-.-...+++.|+++||+|++++.......... ..++.+..++.. ..+. . ...
T Consensus 2 ki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~~-----~~~~~~~~~~~~---~~~~-~----~~~-- 66 (371)
T cd04962 2 KIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSRPFRLDEY-----SPNIFFHEVEVP---QYPL-F----QYP-- 66 (371)
T ss_pred ceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCCCcchhhh-----ccCeEEEEeccc---ccch-h----hcc--
Confidence 455555533 48888899999999999999999987532211111 134555443311 1110 0 000
Q ss_pred chHHHHHHHHHhhHHHHHhhhhcCCcEEEEcCCCcc--hHHHHHH----cCCceEEEe
Q 019759 89 KVPYLKKAHDLLQLPLTNFLQDSRVNWIIHDFISHW--LPPVAAQ----LGVNSVFFS 140 (336)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~ll~~~~~D~vv~D~~~~~--~~~vA~~----~~iP~v~~~ 140 (336)
.+ .......+.+++++.+||+|.+-...+. ...++.+ .++|+|...
T Consensus 67 --~~----~~~~~~~l~~~i~~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 118 (371)
T cd04962 67 --PY----DLALASKIAEVAKRYKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTL 118 (371)
T ss_pred --hh----HHHHHHHHHHHHhcCCccEEeecccCCccHHHHHHHHhcCcCCCcEEEEE
Confidence 00 0112345666777779999988654332 2234433 278887643
No 48
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=94.88 E-value=0.49 Score=42.40 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=63.0
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCCCc
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPIHK 89 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (336)
+|++++....|+...+..++++|.++||+|++++.......... ..+++++.++... . .. ..
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~---~--~~-----~~--- 62 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELE-----ALGVKVIPIPLDR---R--GI-----NP--- 62 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccc-----cCCceEEeccccc---c--cc-----Ch---
Confidence 36666666778999999999999999999999987644322111 1356666555210 0 00 00
Q ss_pred hHHHHHHHHHhhHHHHHhhhhcCCcEEEEcCCCcchH-H-HHHHcCCceEEEe
Q 019759 90 VPYLKKAHDLLQLPLTNFLQDSRVNWIIHDFISHWLP-P-VAAQLGVNSVFFS 140 (336)
Q Consensus 90 ~~~~~~~~~~~~~~~~~ll~~~~~D~vv~D~~~~~~~-~-vA~~~~iP~v~~~ 140 (336)
...+. ....+.+++++.++|+|++....+... . .++..+.|.+...
T Consensus 63 ~~~~~-----~~~~~~~~~~~~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~ 110 (359)
T cd03808 63 FKDLK-----ALLRLYRLLRKERPDIVHTHTPKPGILGRLAARLAGVPKVIYT 110 (359)
T ss_pred HhHHH-----HHHHHHHHHHhcCCCEEEEccccchhHHHHHHHHcCCCCEEEE
Confidence 00111 112345566677899999886554433 3 3443566554443
No 49
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=94.77 E-value=0.16 Score=47.00 Aligned_cols=112 Identities=16% Similarity=0.202 Sum_probs=61.5
Q ss_pred eEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCCC
Q 019759 9 LHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPIH 88 (336)
Q Consensus 9 ~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (336)
.+|+|+.....||+.|-. ++++|.++++++.++..... .+.+.. ....+.++.++. .++ ..
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~l~~---~g~-----------~~ 62 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAG--CESLFDMEELAV---MGL-----------VE 62 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCC--CccccCHHHhhh---ccH-----------HH
Confidence 378888888889999998 99999998887777753221 111110 001122222210 010 00
Q ss_pred chHHHHHHHHHhhHHHHHhhhhcCCcEEEE-cCCCcch--HHHHHHcCCceEEEe
Q 019759 89 KVPYLKKAHDLLQLPLTNFLQDSRVNWIIH-DFISHWL--PPVAAQLGVNSVFFS 140 (336)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~ll~~~~~D~vv~-D~~~~~~--~~vA~~~~iP~v~~~ 140 (336)
....+.... .....+.+++++.+||+|+. +.-..|. ...|++.++|++.+.
T Consensus 63 ~~~~~~~~~-~~~~~~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~ 116 (380)
T PRK00025 63 VLPRLPRLL-KIRRRLKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYV 116 (380)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEe
Confidence 011111111 12345667788889999876 3211232 345678899988764
No 50
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=94.76 E-value=0.5 Score=42.89 Aligned_cols=29 Identities=28% Similarity=0.340 Sum_probs=26.0
Q ss_pred ccchHHHHHHHHHHHhCCCeEEEEeCCCC
Q 019759 19 YGHIMPFFQVAMFLAEKGHHVSYISTPKN 47 (336)
Q Consensus 19 ~gH~~p~l~la~~La~rGh~VT~~t~~~~ 47 (336)
.|+-.....+++.|+++||+|++++....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (394)
T cd03794 14 GGGAFRTTELAEELVKRGHEVTVITGSPN 42 (394)
T ss_pred CCcceeHHHHHHHHHhCCceEEEEecCCC
Confidence 48999999999999999999999987543
No 51
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=94.51 E-value=0.24 Score=45.11 Aligned_cols=105 Identities=22% Similarity=0.233 Sum_probs=64.4
Q ss_pred cchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHH
Q 019759 20 GHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPIHKVPYLKKAHDL 99 (336)
Q Consensus 20 gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (336)
-|+.-+..+.++|-++||+|.+.+-+... ...... ..++.+..+.- .+ . . ....+.... .
T Consensus 11 ~hvhfFk~~I~eL~~~GheV~it~R~~~~--~~~LL~--~yg~~y~~iG~---~g-----~---~----~~~Kl~~~~-~ 70 (335)
T PF04007_consen 11 AHVHFFKNIIRELEKRGHEVLITARDKDE--TEELLD--LYGIDYIVIGK---HG-----D---S----LYGKLLESI-E 70 (335)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEEeccch--HHHHHH--HcCCCeEEEcC---CC-----C---C----HHHHHHHHH-H
Confidence 49999999999999999999998764321 111110 12666766641 11 0 0 011111111 1
Q ss_pred hhHHHHHhhhhcCCcEEEEcCCCcchHHHHHHcCCceEEEeccchH
Q 019759 100 LQLPLTNFLQDSRVNWIIHDFISHWLPPVAAQLGVNSVFFSIYSAA 145 (336)
Q Consensus 100 ~~~~~~~ll~~~~~D~vv~D~~~~~~~~vA~~~~iP~v~~~~~~~~ 145 (336)
-...+.+++++.+||++|+ ...+.+..+|.-+|+|.|.|.-...+
T Consensus 71 R~~~l~~~~~~~~pDv~is-~~s~~a~~va~~lgiP~I~f~D~e~a 115 (335)
T PF04007_consen 71 RQYKLLKLIKKFKPDVAIS-FGSPEAARVAFGLGIPSIVFNDTEHA 115 (335)
T ss_pred HHHHHHHHHHhhCCCEEEe-cCcHHHHHHHHHhCCCeEEEecCchh
Confidence 1233555666778999996 33355667999999999999865433
No 52
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=94.16 E-value=0.46 Score=44.39 Aligned_cols=102 Identities=21% Similarity=0.239 Sum_probs=57.9
Q ss_pred cchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHH
Q 019759 20 GHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPIHKVPYLKKAHDL 99 (336)
Q Consensus 20 gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (336)
|--.-...+++.|+++||+|+++++......-... ...+++++.+|... ..... ... ..+ .
T Consensus 15 G~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~---~~~~i~v~~~p~~~---~~~~~----~~~----~~~-~---- 75 (398)
T cd03796 15 GVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIRY---LTNGLKVYYLPFVV---FYNQS----TLP----TFF-G---- 75 (398)
T ss_pred cHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCccc---ccCceeEEEeccee---ccCCc----ccc----chh-h----
Confidence 55577899999999999999999975322111111 11356666665311 10000 000 000 0
Q ss_pred hhHHHHHhhhhcCCcEEEEcCCCcc----hHHHHHHcCCceEEEe
Q 019759 100 LQLPLTNFLQDSRVNWIIHDFISHW----LPPVAAQLGVNSVFFS 140 (336)
Q Consensus 100 ~~~~~~~ll~~~~~D~vv~D~~~~~----~~~vA~~~~iP~v~~~ 140 (336)
....+.+.+.+.+||+|-+-..... +..+++.+++|+|...
T Consensus 76 ~~~~l~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t~ 120 (398)
T cd03796 76 TFPLLRNILIRERITIVHGHQAFSALAHEALLHARTMGLKTVFTD 120 (398)
T ss_pred hHHHHHHHHHhcCCCEEEECCCCchHHHHHHHHhhhcCCcEEEEe
Confidence 1123455566668999988763322 3456788899988643
No 53
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=94.16 E-value=0.51 Score=42.66 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=27.0
Q ss_pred CCccchHHHHHHHHHHHhCCCeEEEEeCCCC
Q 019759 17 LAYGHIMPFFQVAMFLAEKGHHVSYISTPKN 47 (336)
Q Consensus 17 p~~gH~~p~l~la~~La~rGh~VT~~t~~~~ 47 (336)
...|+......+++.|+++||+|+++++...
T Consensus 12 ~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (374)
T cd03817 12 QVNGVATSIRRLAEELEKRGHEVYVVAPSYP 42 (374)
T ss_pred CCCCeehHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 4568999999999999999999999987543
No 54
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=93.87 E-value=0.82 Score=47.69 Aligned_cols=131 Identities=18% Similarity=0.168 Sum_probs=71.7
Q ss_pred CCCCCCceEEEEEcCCC---------------ccchHHHHHHHHHHHhCC--CeEEEEeCCCCCCCCC-CC------C--
Q 019759 2 DLQNRQKLHIAMFPWLA---------------YGHIMPFFQVAMFLAEKG--HHVSYISTPKNIDRLP-QI------P-- 55 (336)
Q Consensus 2 ~~~~~~~~~il~~~~p~---------------~gH~~p~l~la~~La~rG--h~VT~~t~~~~~~~~~-~~------~-- 55 (336)
+++..+++.|+++...+ -|+..-.++||++|+++| |+|+++|-......+. .+ .
T Consensus 163 ~~~~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~ 242 (1050)
T TIGR02468 163 DQQKEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTP 242 (1050)
T ss_pred hhcccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccc
Confidence 34456678888876432 246777899999999998 8999998643211110 00 0
Q ss_pred ---------CCCCCCeEEEecCCCCCCC-CCCCCCCCCCCCCCchHHHHHHHHHhhHHHHH---hh-hh------cCCcE
Q 019759 56 ---------TNLSSRLSYIQLPLPQLDG-LPEGAESTAELPIHKVPYLKKAHDLLQLPLTN---FL-QD------SRVNW 115 (336)
Q Consensus 56 ---------~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---ll-~~------~~~D~ 115 (336)
....++++++.+|+...+. ++ ...+..++..+.+.+...+.+ .+ +. ..||+
T Consensus 243 ~~~~~~~~~~~~~~g~rIvRip~GP~~~~l~---------Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDv 313 (1050)
T TIGR02468 243 RSSENDGDEMGESSGAYIIRIPFGPRDKYIP---------KEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYV 313 (1050)
T ss_pred cccccccccccCCCCeEEEEeccCCCCCCcC---------HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCE
Confidence 0012366666666321110 11 011234444444433322221 11 11 14899
Q ss_pred EEEcCCCcc--hHHHHHHcCCceEEEec
Q 019759 116 IIHDFISHW--LPPVAAQLGVNSVFFSI 141 (336)
Q Consensus 116 vv~D~~~~~--~~~vA~~~~iP~v~~~~ 141 (336)
|-+...... +..+++.+++|.|...-
T Consensus 314 IHaHyw~sG~aa~~L~~~lgVP~V~T~H 341 (1050)
T TIGR02468 314 IHGHYADAGDSAALLSGALNVPMVLTGH 341 (1050)
T ss_pred EEECcchHHHHHHHHHHhhCCCEEEECc
Confidence 999875444 34788999999877554
No 55
>PRK10307 putative glycosyl transferase; Provisional
Probab=93.76 E-value=1.2 Score=41.74 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=19.8
Q ss_pred HHHHHHHHHhCCCeEEEEeCCC
Q 019759 25 FFQVAMFLAEKGHHVSYISTPK 46 (336)
Q Consensus 25 ~l~la~~La~rGh~VT~~t~~~ 46 (336)
+..|+++|.++||+||++|+..
T Consensus 21 ~~~l~~~L~~~G~~V~vit~~~ 42 (412)
T PRK10307 21 TGEMAEWLAARGHEVRVITAPP 42 (412)
T ss_pred HHHHHHHHHHCCCeEEEEecCC
Confidence 5799999999999999999753
No 56
>PLN02846 digalactosyldiacylglycerol synthase
Probab=93.22 E-value=1.8 Score=41.41 Aligned_cols=39 Identities=28% Similarity=0.336 Sum_probs=31.1
Q ss_pred CceEEEEEcC---CCc-cchHHHHHHHHHHHhCC-CeEEEEeCC
Q 019759 7 QKLHIAMFPW---LAY-GHIMPFFQVAMFLAEKG-HHVSYISTP 45 (336)
Q Consensus 7 ~~~~il~~~~---p~~-gH~~p~l~la~~La~rG-h~VT~~t~~ 45 (336)
+|.||++++. |.. |=....+.++..|+++| |+||++.+.
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~ 46 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPW 46 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecC
Confidence 4589999984 444 55567788888999999 899999874
No 57
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=93.21 E-value=0.91 Score=36.27 Aligned_cols=100 Identities=13% Similarity=0.070 Sum_probs=50.6
Q ss_pred CccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHH
Q 019759 18 AYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPIHKVPYLKKAH 97 (336)
Q Consensus 18 ~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (336)
..|=-..+..|+++|+++||+||++++...... . .. ....... ...... . .....+
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~-~-------~~-~~~~~~~---~~~~~~-------~-~~~~~~---- 66 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVKDPI-E-------EE-LVKIFVK---IPYPIR-------K-RFLRSF---- 66 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS--S-------ST-EEEE------TT-SST-------S-S--HHH----
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCCccc-h-------hh-ccceeee---eecccc-------c-ccchhH----
Confidence 336777899999999999999999987533221 1 12 1111110 000000 0 000111
Q ss_pred HHhhHHHHHhhhhcCCcEEEEcCCCcc-hHHHHHHcCCceEEEeccc
Q 019759 98 DLLQLPLTNFLQDSRVNWIIHDFISHW-LPPVAAQLGVNSVFFSIYS 143 (336)
Q Consensus 98 ~~~~~~~~~ll~~~~~D~vv~D~~~~~-~~~vA~~~~iP~v~~~~~~ 143 (336)
.....+.+++++.++|+|-+.....+ ....+.. ++|.+...-..
T Consensus 67 -~~~~~~~~~i~~~~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~ 111 (177)
T PF13439_consen 67 -FFMRRLRRLIKKEKPDIVHIHGPPAFWIALLACR-KVPIVYTIHGP 111 (177)
T ss_dssp -HHHHHHHHHHHHHT-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HH
T ss_pred -HHHHHHHHHHHHcCCCeEEecccchhHHHHHhcc-CCCEEEEeCCC
Confidence 12245666777779999955443333 3334444 89988876543
No 58
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=92.91 E-value=1.5 Score=41.66 Aligned_cols=108 Identities=17% Similarity=0.173 Sum_probs=56.5
Q ss_pred cchHHHHHHHHHHHhCCC--eEEEEeCCCCCCCC-CCC---CCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCCCchHHH
Q 019759 20 GHIMPFFQVAMFLAEKGH--HVSYISTPKNIDRL-PQI---PTNLSSRLSYIQLPLPQLDGLPEGAESTAELPIHKVPYL 93 (336)
Q Consensus 20 gH~~p~l~la~~La~rGh--~VT~~t~~~~~~~~-~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (336)
|=-.-+..|+++|+++|| +|+++|........ ... ......+++++.++.... ... . ...+
T Consensus 27 G~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~~~-----~~~-----~---~~~~ 93 (439)
T TIGR02472 27 GQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFGPR-----RYL-----R---KELL 93 (439)
T ss_pred CcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCCCC-----CCc-----C---hhhh
Confidence 334567899999999997 99999963221100 000 000113566665552100 000 0 0001
Q ss_pred HHHHHHhhHHHHHhhhhc--CCcEEEEcCCCcc--hHHHHHHcCCceEEEe
Q 019759 94 KKAHDLLQLPLTNFLQDS--RVNWIIHDFISHW--LPPVAAQLGVNSVFFS 140 (336)
Q Consensus 94 ~~~~~~~~~~~~~ll~~~--~~D~vv~D~~~~~--~~~vA~~~~iP~v~~~ 140 (336)
...+..+...+.+++++. +||+|-+-..... +..+++.+++|+|...
T Consensus 94 ~~~~~~~~~~l~~~~~~~~~~~DvIH~h~~~~~~~~~~~~~~~~~p~V~t~ 144 (439)
T TIGR02472 94 WPYLDELADNLLQHLRQQGHLPDLIHAHYADAGYVGARLSRLLGVPLIFTG 144 (439)
T ss_pred hhhHHHHHHHHHHHHHHcCCCCCEEEEcchhHHHHHHHHHHHhCCCEEEec
Confidence 111222334455555543 6999999764322 2356778899987653
No 59
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=92.75 E-value=0.37 Score=35.34 Aligned_cols=54 Identities=20% Similarity=0.296 Sum_probs=45.7
Q ss_pred ccccccccccCCCCeEEEEEeCccccC---CH--HHHHHHHHHHHhCCCceEEEEeCCC
Q 019759 257 WPVLKDWLDSKENNSVVYAAFGTEMTL---SQ--ELLHELAYGLEKSGLPFIWIIKNRP 310 (336)
Q Consensus 257 ~~~l~~wLd~~~~~~VVyvSfGS~~~~---~~--~~~~~ia~al~~~~~~~lW~~r~~~ 310 (336)
+..+.+||...+++.-|.|++||.... .. ..+.+++++|+.++.-++-.+....
T Consensus 27 ~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~ 85 (97)
T PF06722_consen 27 PAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQ 85 (97)
T ss_dssp SEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCC
T ss_pred CCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHH
Confidence 467888999988999999999998753 33 5889999999999999998887653
No 60
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=92.59 E-value=1.9 Score=38.61 Aligned_cols=106 Identities=17% Similarity=0.072 Sum_probs=59.1
Q ss_pred EEEEEcCC--------CccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCC
Q 019759 10 HIAMFPWL--------AYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAES 81 (336)
Q Consensus 10 ~il~~~~p--------~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 81 (336)
+|++++.. ..|--.-...|++.|.++||+|++++....... ........ .......
T Consensus 2 kI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~-----------~~~~~~~~---~~~~~~~-- 65 (335)
T cd03802 2 RIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTA-----------APLVPVVP---EPLRLDA-- 65 (335)
T ss_pred eEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcc-----------cceeeccC---CCccccc--
Confidence 56666532 235557789999999999999999987533210 01111110 0000000
Q ss_pred CCCCCCCchHHHHHHHHHhhHHHHHhhhhcCCcEEEEcCCCcchHHHHHHcCCceEEEec
Q 019759 82 TAELPIHKVPYLKKAHDLLQLPLTNFLQDSRVNWIIHDFISHWLPPVAAQLGVNSVFFSI 141 (336)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~vv~D~~~~~~~~vA~~~~iP~v~~~~ 141 (336)
. .... ........+.+++++.++|+|.+-....... .++..++|+|....
T Consensus 66 ----~--~~~~---~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~-~~~~~~~~~v~~~h 115 (335)
T cd03802 66 ----P--GRDR---AEAEALALAERALAAGDFDIVHNHSLHLPLP-FARPLPVPVVTTLH 115 (335)
T ss_pred ----c--hhhH---hhHHHHHHHHHHHhcCCCCEEEecCcccchh-hhcccCCCEEEEec
Confidence 0 0000 0111223455666777899998876555444 77888899876544
No 61
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=92.51 E-value=2.2 Score=39.48 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=26.3
Q ss_pred EEEEEc-CCC-ccchHHHHHHHHHHHhCCCeEEEEeCC
Q 019759 10 HIAMFP-WLA-YGHIMPFFQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 10 ~il~~~-~p~-~gH~~p~l~la~~La~rGh~VT~~t~~ 45 (336)
+|+++. ..+ .|=-.-+..||++|+++||+||++++.
T Consensus 2 kIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~ 39 (392)
T cd03805 2 RVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSH 39 (392)
T ss_pred eEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 455554 222 244456799999999999999999874
No 62
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=92.08 E-value=1.3 Score=37.06 Aligned_cols=118 Identities=19% Similarity=0.192 Sum_probs=58.4
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCC--CCCCCC
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAES--TAELPI 87 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~ 87 (336)
+|++.--=|. +.--+..|+++|.+.||+|+++.+....+-.-... +....++...... ...+.+... ....+
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~si-t~~~pl~~~~~~~---~~~~~~~~~~~v~GTP- 75 (196)
T PF01975_consen 2 RILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSI-TLHKPLRVTEVEP---GHDPGGVEAYAVSGTP- 75 (196)
T ss_dssp EEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS---SSSEEEEEEEE----TTCCSTTEEEEESS-H-
T ss_pred eEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceee-cCCCCeEEEEEEe---cccCCCCCEEEEcCcH-
Confidence 4455443333 34458899999988889999999876543221111 1122444433210 000111100 01111
Q ss_pred CchHHHHHHHHHhhHHHHHhhhhcCCcEEEEcC----------CCcch---HHHHHHcCCceEEEecc
Q 019759 88 HKVPYLKKAHDLLQLPLTNFLQDSRVNWIIHDF----------ISHWL---PPVAAQLGVNSVFFSIY 142 (336)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~ll~~~~~D~vv~D~----------~~~~~---~~vA~~~~iP~v~~~~~ 142 (336)
.+-..-.+..++.+.+||+||+-. +++.. ..-|..+|+|.|.++..
T Consensus 76 ---------aDcv~~al~~~~~~~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~ 134 (196)
T PF01975_consen 76 ---------ADCVKLALDGLLPDKKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLD 134 (196)
T ss_dssp ---------HHHHHHHHHCTSTTSS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEE
T ss_pred ---------HHHHHHHHHhhhccCCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEecc
Confidence 111223444555555699999853 33332 34466889999998764
No 63
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=91.68 E-value=3.8 Score=38.12 Aligned_cols=110 Identities=15% Similarity=0.059 Sum_probs=57.3
Q ss_pred CccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHH
Q 019759 18 AYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPIHKVPYLKKAH 97 (336)
Q Consensus 18 ~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (336)
..|.-.-...|+++|+++||+||++++......-... ....++++..++.....+.. .......+...
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~- 86 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPVV--EVAPGVRVRNVVAGPYEGLD---------KEDLPTQLCAF- 86 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCcc--ccCCCcEEEEecCCCcccCC---------HHHHHHHHHHH-
Confidence 3477788999999999999999999974321110000 11246666665421110000 00000111111
Q ss_pred HHhhHHHHHhhhh--cCCcEEEEcCCCc-c-hHHHHHHcCCceEEEec
Q 019759 98 DLLQLPLTNFLQD--SRVNWIIHDFISH-W-LPPVAAQLGVNSVFFSI 141 (336)
Q Consensus 98 ~~~~~~~~~ll~~--~~~D~vv~D~~~~-~-~~~vA~~~~iP~v~~~~ 141 (336)
....+..+++. .++|+|-+..+.. + +..+++.+++|+|....
T Consensus 87 --~~~~~~~~~~~~~~~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~h 132 (405)
T TIGR03449 87 --TGGVLRAEARHEPGYYDLIHSHYWLSGQVGWLLRDRWGVPLVHTAH 132 (405)
T ss_pred --HHHHHHHHhhccCCCCCeEEechHHHHHHHHHHHHhcCCCEEEecc
Confidence 11223334332 3799997765322 2 33566788999887554
No 64
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=91.48 E-value=1.1 Score=40.56 Aligned_cols=98 Identities=17% Similarity=0.136 Sum_probs=57.5
Q ss_pred ccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 019759 19 YGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPIHKVPYLKKAHD 98 (336)
Q Consensus 19 ~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (336)
.|--.....++++|+++||+|++++.......... ..+++++.+++. .. . . ...+.
T Consensus 10 gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~-----~~~~~~~~~~~~---~~--------~-~---~~~~~---- 65 (355)
T cd03819 10 GGVERGTLELARALVERGHRSLVASAGGRLVAELE-----AEGSRHIKLPFI---SK--------N-P---LRILL---- 65 (355)
T ss_pred CcHHHHHHHHHHHHHHcCCEEEEEcCCCchHHHHH-----hcCCeEEEcccc---cc--------c-h---hhhHH----
Confidence 46667789999999999999999986432111000 125555555421 00 0 0 01111
Q ss_pred HhhHHHHHhhhhcCCcEEEEcCCC-cc-hHHHHHHcCCceEEEec
Q 019759 99 LLQLPLTNFLQDSRVNWIIHDFIS-HW-LPPVAAQLGVNSVFFSI 141 (336)
Q Consensus 99 ~~~~~~~~ll~~~~~D~vv~D~~~-~~-~~~vA~~~~iP~v~~~~ 141 (336)
....+.+++++.++|+|++.... .+ +..+++.+++|+|..+.
T Consensus 66 -~~~~l~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h 109 (355)
T cd03819 66 -NVARLRRLIREEKVDIVHARSRAPAWSAYLAARRTRPPFVTTVH 109 (355)
T ss_pred -HHHHHHHHHHHcCCCEEEECCCchhHHHHHHHHhcCCCEEEEeC
Confidence 11234556667789999998643 33 33556788899887554
No 65
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=91.30 E-value=5.2 Score=40.77 Aligned_cols=111 Identities=14% Similarity=0.207 Sum_probs=58.9
Q ss_pred ccchHHHHHHHHH--------HHhCCC----eEEEEeCCCCCCC-------CCCCCCCCCCCeEEEecCCCCCCC--CCC
Q 019759 19 YGHIMPFFQVAMF--------LAEKGH----HVSYISTPKNIDR-------LPQIPTNLSSRLSYIQLPLPQLDG--LPE 77 (336)
Q Consensus 19 ~gH~~p~l~la~~--------La~rGh----~VT~~t~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~--~~~ 77 (336)
-|+..-.+++|++ |+++|| +|+++|--..... +... ...++++.+.+|+-..+. ++
T Consensus 279 GGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~--~~~~~~~I~rvp~g~~~~~~~~- 355 (784)
T TIGR02470 279 GGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEKV--YGTEHAWILRVPFRTENGIILR- 355 (784)
T ss_pred CCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCccccccccccccc--cCCCceEEEEecCCCCcccccc-
Confidence 4777778888887 568999 7779885322111 0111 112467776666421111 11
Q ss_pred CCCCCCCCCCCchHHHHHHHHHhhHHHHHhhh-h--cCCcEEEEcCCCc-c-hHHHHHHcCCceEEEe
Q 019759 78 GAESTAELPIHKVPYLKKAHDLLQLPLTNFLQ-D--SRVNWIIHDFISH-W-LPPVAAQLGVNSVFFS 140 (336)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~-~--~~~D~vv~D~~~~-~-~~~vA~~~~iP~v~~~ 140 (336)
.+-. ...+..++. .+...+.+.+. + .+||+|++.+... . +..+|+++|+|.+...
T Consensus 356 ~~i~----k~~l~p~l~----~f~~~~~~~~~~~~~~~pDlIHahy~d~glva~lla~~lgVP~v~t~ 415 (784)
T TIGR02470 356 NWIS----RFEIWPYLE----TFAEDAEKEILAELQGKPDLIIGNYSDGNLVASLLARKLGVTQCTIA 415 (784)
T ss_pred cccC----HHHHHHHHH----HHHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHHHHhcCCCEEEEC
Confidence 0000 011223333 33333333222 2 3699999987544 3 3478999999977653
No 66
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=91.04 E-value=2.5 Score=37.75 Aligned_cols=102 Identities=19% Similarity=0.062 Sum_probs=58.3
Q ss_pred ccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 019759 19 YGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPIHKVPYLKKAHD 98 (336)
Q Consensus 19 ~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (336)
.|+...+..+++.|.+.||+|++++.......... ....... .... .. ... .. .....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~---------~~~~~~~---~~~~-~~----~~~----~~-~~~~~ 71 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGGLPDEE---------EVGGIVV---VRPP-PL----LRV----RR-LLLLL 71 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCCCCcee---------eecCcce---ecCC-cc----ccc----ch-hHHHH
Confidence 68999999999999999999999987543321110 0000000 0000 00 000 00 00111
Q ss_pred HhhHHHHHhhhhcCCcEEEEcCCCcchH--HHHHHcCCceEEEecc
Q 019759 99 LLQLPLTNFLQDSRVNWIIHDFISHWLP--PVAAQLGVNSVFFSIY 142 (336)
Q Consensus 99 ~~~~~~~~ll~~~~~D~vv~D~~~~~~~--~vA~~~~iP~v~~~~~ 142 (336)
.....+..+++..++|+|+......... ..+...++|++.....
T Consensus 72 ~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~ 117 (374)
T cd03801 72 LLALRLRRLLRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHG 117 (374)
T ss_pred HHHHHHHHHhhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEecc
Confidence 1223455566667899999998665544 4778889998876543
No 67
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=90.92 E-value=2.9 Score=37.12 Aligned_cols=100 Identities=22% Similarity=0.169 Sum_probs=53.9
Q ss_pred CccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHH
Q 019759 18 AYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPIHKVPYLKKAH 97 (336)
Q Consensus 18 ~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (336)
..|....+..++++|+++||+|++++.......... ...++.+..++.. ... ... ..+
T Consensus 12 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~----~~~~~~~~~~~~~---~~~-------~~~----~~~---- 69 (348)
T cd03820 12 AGGAERVLSNLANALAEKGHEVTIISLDKGEPPFYE----LDPKIKVIDLGDK---RDS-------KLL----ARF---- 69 (348)
T ss_pred CCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCccc----cCCccceeecccc---ccc-------chh----ccc----
Confidence 356777789999999999999999987543301001 1124444433310 000 000 000
Q ss_pred HHhhHHHHHhhhhcCCcEEEEcCCCcchHHHHHHcCC-ceEEEe
Q 019759 98 DLLQLPLTNFLQDSRVNWIIHDFISHWLPPVAAQLGV-NSVFFS 140 (336)
Q Consensus 98 ~~~~~~~~~ll~~~~~D~vv~D~~~~~~~~vA~~~~i-P~v~~~ 140 (336)
.....+.++++..++|+|++..........+...+. |.+...
T Consensus 70 -~~~~~~~~~l~~~~~d~i~~~~~~~~~~~~~~~~~~~~~i~~~ 112 (348)
T cd03820 70 -KKLRRLRKLLKNNKPDVVISFLTSLLTFLASLGLKIVKLIVSE 112 (348)
T ss_pred -cchHHHHHhhcccCCCEEEEcCchHHHHHHHHhhccccEEEec
Confidence 012345556666789999998865223333344444 666543
No 68
>PLN00142 sucrose synthase
Probab=90.45 E-value=2.6 Score=42.95 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=23.9
Q ss_pred CCcEEEEcCCCc-c-hHHHHHHcCCceEEEec
Q 019759 112 RVNWIIHDFISH-W-LPPVAAQLGVNSVFFSI 141 (336)
Q Consensus 112 ~~D~vv~D~~~~-~-~~~vA~~~~iP~v~~~~ 141 (336)
+||+|...+... + +..+|+++|||.+....
T Consensus 408 ~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~H 439 (815)
T PLN00142 408 KPDLIIGNYSDGNLVASLLAHKLGVTQCTIAH 439 (815)
T ss_pred CCCEEEECCccHHHHHHHHHHHhCCCEEEEcc
Confidence 699999997554 3 34789999999987654
No 69
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=90.34 E-value=7.2 Score=31.84 Aligned_cols=41 Identities=5% Similarity=-0.241 Sum_probs=30.1
Q ss_pred hHHHHHhhhh-cCCcEEEEcCCCcchHHHHHHc-CCceEEEec
Q 019759 101 QLPLTNFLQD-SRVNWIIHDFISHWLPPVAAQL-GVNSVFFSI 141 (336)
Q Consensus 101 ~~~~~~ll~~-~~~D~vv~D~~~~~~~~vA~~~-~iP~v~~~~ 141 (336)
...+.+|.++ ..||+||...-.-.++-+-..+ ++|.+.+.-
T Consensus 54 ~~a~~~L~~~Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 54 ARAARQLRAQGFVPDVIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred HHHHHHHHHcCCCCCEEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 3444444433 4689999999887788888888 788888754
No 70
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=90.33 E-value=2.5 Score=35.11 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=24.5
Q ss_pred CccchHHHHHHHHHHHhCCCeEEEEe
Q 019759 18 AYGHIMPFFQVAMFLAEKGHHVSYIS 43 (336)
Q Consensus 18 ~~gH~~p~l~la~~La~rGh~VT~~t 43 (336)
..||-.....+++.|+++||+|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 56999999999999999999999988
No 71
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=90.13 E-value=4.7 Score=38.55 Aligned_cols=26 Identities=27% Similarity=0.146 Sum_probs=22.9
Q ss_pred cchHHHHHHHHHHHhCCCeEEEEeCC
Q 019759 20 GHIMPFFQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 20 gH~~p~l~la~~La~rGh~VT~~t~~ 45 (336)
|=-.....|+++|+++||+|+++++.
T Consensus 17 Gl~~~~~~L~~aL~~~G~~V~Vi~p~ 42 (476)
T cd03791 17 GLGDVVGALPKALAKLGHDVRVIMPK 42 (476)
T ss_pred cHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 56667889999999999999999974
No 72
>PLN02275 transferase, transferring glycosyl groups
Probab=90.11 E-value=10 Score=35.10 Aligned_cols=122 Identities=12% Similarity=0.019 Sum_probs=62.6
Q ss_pred ceEEEEEcCCCccchHHHHHHHHHHHhCCC-eEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCC
Q 019759 8 KLHIAMFPWLAYGHIMPFFQVAMFLAEKGH-HVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELP 86 (336)
Q Consensus 8 ~~~il~~~~p~~gH~~p~l~la~~La~rGh-~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 86 (336)
++||+.. +-.|.---+..++..|+++|| +||+++....... ... ....+++.+.++.+ ........ .
T Consensus 6 ~~~~~~~--~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~-~~~--~~~~~v~v~r~~~~------~~~~~~~~-~ 73 (371)
T PLN02275 6 RAAVVVL--GDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPI-PAL--LNHPSIHIHLMVQP------RLLQRLPR-V 73 (371)
T ss_pred EEEEEEe--cCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCC-HHH--hcCCcEEEEECCCc------cccccccc-c
Confidence 4455444 666777788999999999986 7999986432211 111 01236787777621 00000000 0
Q ss_pred CCchHHHHHHHHHhhHHHHHh--hhhcCCcEEEEcC-CCcc----hHHHHHHcCCceEEEecc
Q 019759 87 IHKVPYLKKAHDLLQLPLTNF--LQDSRVNWIIHDF-ISHW----LPPVAAQLGVNSVFFSIY 142 (336)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~l--l~~~~~D~vv~D~-~~~~----~~~vA~~~~iP~v~~~~~ 142 (336)
.....++......+ ..+..+ .+..+||+|++-. .... +..+++..++|+|..+..
T Consensus 74 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 135 (371)
T PLN02275 74 LYALALLLKVAIQF-LMLLWFLCVKIPRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHN 135 (371)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCC
Confidence 01111222111112 222222 2456899998853 2222 224566788999876553
No 73
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=89.59 E-value=2 Score=38.18 Aligned_cols=37 Identities=16% Similarity=0.081 Sum_probs=29.5
Q ss_pred EEEEcC--CCccchHHHHHHHHHHHhCCCeEEEEeCCCC
Q 019759 11 IAMFPW--LAYGHIMPFFQVAMFLAEKGHHVSYISTPKN 47 (336)
Q Consensus 11 il~~~~--p~~gH~~p~l~la~~La~rGh~VT~~t~~~~ 47 (336)
|+++.. +..|+-..+..+++.|++.||+|++++....
T Consensus 2 Il~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~ 40 (353)
T cd03811 2 ILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDE 40 (353)
T ss_pred eEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCC
Confidence 444443 3568889999999999999999999987543
No 74
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=89.42 E-value=2.2 Score=37.02 Aligned_cols=102 Identities=22% Similarity=0.251 Sum_probs=54.2
Q ss_pred chHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHh
Q 019759 21 HIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPIHKVPYLKKAHDLL 100 (336)
Q Consensus 21 H~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (336)
|.--+..|++.|. .+++||++.+....+-.-... ++...++...+.. ..-.....+ .+-.
T Consensus 12 ~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~sl-Tl~~Plr~~~~~~--------~~~av~GTP----------aDCV 71 (252)
T COG0496 12 HAPGIRALARALR-EGADVTVVAPDREQSGASHSL-TLHEPLRVRQVDN--------GAYAVNGTP----------ADCV 71 (252)
T ss_pred CCHHHHHHHHHHh-hCCCEEEEccCCCCccccccc-ccccCceeeEecc--------ceEEecCCh----------HHHH
Confidence 3334778888888 999999999876543221110 1112333332220 000000111 0011
Q ss_pred hHHHHHhhhhcCCcEEEEcC----------CCcchH---HHHHHcCCceEEEecc
Q 019759 101 QLPLTNFLQDSRVNWIIHDF----------ISHWLP---PVAAQLGVNSVFFSIY 142 (336)
Q Consensus 101 ~~~~~~ll~~~~~D~vv~D~----------~~~~~~---~vA~~~~iP~v~~~~~ 142 (336)
.-.+..++++..||+||+.. +++..+ .-|.-+|+|.|.++-.
T Consensus 72 ~lal~~l~~~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 72 ILGLNELLKEPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred HHHHHHhccCCCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 23456677676799999854 333322 3466888898887653
No 75
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=89.03 E-value=6.9 Score=35.38 Aligned_cols=46 Identities=17% Similarity=0.163 Sum_probs=30.9
Q ss_pred ccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecC
Q 019759 19 YGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLP 68 (336)
Q Consensus 19 ~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~ 68 (336)
.|=-.-...++++|.++||+|++++.......... ...+++++.++
T Consensus 15 gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~~~----~~~~i~~~~~~ 60 (363)
T cd04955 15 GGFETFVEELAPRLVARGHEVTVYCRSPYPKQKET----EYNGVRLIHIP 60 (363)
T ss_pred CcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCccc----ccCCceEEEcC
Confidence 34456678999999999999999987543221111 12467777665
No 76
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=88.54 E-value=8.4 Score=34.34 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=36.3
Q ss_pred CCceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCC
Q 019759 6 RQKLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKN 47 (336)
Q Consensus 6 ~~~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~ 47 (336)
++...|.+.-.||-|--.-.-.|+++|.++||+|-+++-+..
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPS 90 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPS 90 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCC
Confidence 444468888899999999999999999999999999987543
No 77
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=88.46 E-value=7.2 Score=34.11 Aligned_cols=41 Identities=15% Similarity=0.075 Sum_probs=29.2
Q ss_pred CCceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 019759 6 RQKLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNI 48 (336)
Q Consensus 6 ~~~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~ 48 (336)
.++.+|++.--=|. |.--+..|++.|.+.| +|+++.|....
T Consensus 3 ~~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~ 43 (257)
T PRK13932 3 DKKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPH 43 (257)
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCC
Confidence 56688888774433 2234888999998888 79999886554
No 78
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=86.72 E-value=9.1 Score=34.16 Aligned_cols=30 Identities=20% Similarity=0.125 Sum_probs=26.6
Q ss_pred CccchHHHHHHHHHHHhCCCeEEEEeCCCC
Q 019759 18 AYGHIMPFFQVAMFLAEKGHHVSYISTPKN 47 (336)
Q Consensus 18 ~~gH~~p~l~la~~La~rGh~VT~~t~~~~ 47 (336)
..|+-.-+..+++.|++.||+|++++....
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~ 42 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPW 42 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCC
Confidence 478999999999999999999999987544
No 79
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=85.62 E-value=1.2 Score=41.37 Aligned_cols=36 Identities=11% Similarity=0.151 Sum_probs=29.6
Q ss_pred eEEEEEcC-CCccchHHHHHHHHHHHhCCCeEEEEeC
Q 019759 9 LHIAMFPW-LAYGHIMPFFQVAMFLAEKGHHVSYIST 44 (336)
Q Consensus 9 ~~il~~~~-p~~gH~~p~l~la~~La~rGh~VT~~t~ 44 (336)
.+|++++. -|.||..+..+|+++|.++||+++++..
T Consensus 5 ~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d 41 (380)
T PRK13609 5 PKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCD 41 (380)
T ss_pred CeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 47777775 4559999999999999999998777654
No 80
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=85.53 E-value=2.3 Score=40.05 Aligned_cols=99 Identities=16% Similarity=0.212 Sum_probs=59.1
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhCCCe--E--EEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCC
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEKGHH--V--SYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAEL 85 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~rGh~--V--T~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 85 (336)
.++-+...+-|.++-...|+++|.+++++ | |+.|+. ..+...+. ...++....+|+ + .
T Consensus 51 ~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~-~~~~~~~~---~~~~~~~~~~P~---d-~---------- 112 (425)
T PRK05749 51 PLIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMTPT-GSERAQAL---FGDDVEHRYLPY---D-L---------- 112 (425)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCCcc-HHHHHHHh---cCCCceEEEecC---C-c----------
Confidence 45667778889999999999999998755 3 332221 11111111 112344444441 1 0
Q ss_pred CCCchHHHHHHHHHhhHHHHHhhhhcCCcEEEEcCCCcc--hHHHHHHcCCceEEEec
Q 019759 86 PIHKVPYLKKAHDLLQLPLTNFLQDSRVNWIIHDFISHW--LPPVAAQLGVNSVFFSI 141 (336)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~vv~D~~~~~--~~~vA~~~~iP~v~~~~ 141 (336)
...+.+++++.+||+++..-.-.| ....+++.++|.+.+..
T Consensus 113 ---------------~~~~~~~l~~~~Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~~~ 155 (425)
T PRK05749 113 ---------------PGAVRRFLRFWRPKLVIIMETELWPNLIAELKRRGIPLVLANA 155 (425)
T ss_pred ---------------HHHHHHHHHhhCCCEEEEEecchhHHHHHHHHHCCCCEEEEec
Confidence 024566777889999886432223 44567889999988643
No 81
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=84.36 E-value=12 Score=33.68 Aligned_cols=30 Identities=20% Similarity=0.130 Sum_probs=26.0
Q ss_pred CccchHHHHHHHHHHHhCCCeEEEEeCCCC
Q 019759 18 AYGHIMPFFQVAMFLAEKGHHVSYISTPKN 47 (336)
Q Consensus 18 ~~gH~~p~l~la~~La~rGh~VT~~t~~~~ 47 (336)
..|.-.-...++++|.++||+|++++....
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (357)
T cd03795 13 RGGIEQVIRDLAEGLAARGIEVAVLCASPE 42 (357)
T ss_pred CCcHHHHHHHHHHHHHhCCCceEEEecCCC
Confidence 458888999999999999999999987543
No 82
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=83.84 E-value=4.2 Score=37.18 Aligned_cols=108 Identities=13% Similarity=0.088 Sum_probs=54.1
Q ss_pred CCccchHHHHHHHHHHHhC-CCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCC-CCCCCCCCCCCCCCCCCCCchHHHH
Q 019759 17 LAYGHIMPFFQVAMFLAEK-GHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPL-PQLDGLPEGAESTAELPIHKVPYLK 94 (336)
Q Consensus 17 p~~gH~~p~l~la~~La~r-Gh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (336)
..+..+.=+..+.++|.++ |+++.++.+..+....... .+....+.. +.+ .+.... .... .....
T Consensus 7 gtr~~~~~~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~------~~~~~~~~~~~~~-~l~~~~----~~~~-~~~~~- 73 (363)
T cd03786 7 GTRPEYIKLAPLIRALKKDPGFELVLVVTGQHYDMEMGV------TFFEILFIIKPDY-DLLLGS----DSQS-LGAQT- 73 (363)
T ss_pred ecCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCChhhhH------HHHHhhCCCCCCE-EEecCC----CCCC-HHHHH-
Confidence 5666666777788889887 8999987664333211110 111110110 000 010000 0000 00111
Q ss_pred HHHHHhhHHHHHhhhhcCCcEEEEcCCC--cc-hHHHHHHcCCceEEEe
Q 019759 95 KAHDLLQLPLTNFLQDSRVNWIIHDFIS--HW-LPPVAAQLGVNSVFFS 140 (336)
Q Consensus 95 ~~~~~~~~~~~~ll~~~~~D~vv~D~~~--~~-~~~vA~~~~iP~v~~~ 140 (336)
......+.+.+++.+||+|++-... .. +..+|+..|+|++.+.
T Consensus 74 ---~~~~~~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~~iPvv~~~ 119 (363)
T cd03786 74 ---AGLLIGLEAVLLEEKPDLVLVLGDTNETLAAALAAFKLGIPVAHVE 119 (363)
T ss_pred ---HHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEe
Confidence 1123345556666689999987422 22 3467788999988653
No 83
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=82.99 E-value=15 Score=34.71 Aligned_cols=113 Identities=12% Similarity=0.062 Sum_probs=57.8
Q ss_pred cchHHHHHHHHHHHhC--CCeEEEEeCCCCCCC------CCCCC-CCCCCCeEEEecC-CCCCCCCCCCCCCCCCCCCCc
Q 019759 20 GHIMPFFQVAMFLAEK--GHHVSYISTPKNIDR------LPQIP-TNLSSRLSYIQLP-LPQLDGLPEGAESTAELPIHK 89 (336)
Q Consensus 20 gH~~p~l~la~~La~r--Gh~VT~~t~~~~~~~------~~~~~-~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 89 (336)
|==-.+...+++|.++ ||+||++|+...... ..+.. ....+++.++.+. . ..-++.. ... .
T Consensus 15 g~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~--~~~~~~~-----~~~--r 85 (419)
T cd03806 15 GGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKY--RKLVEAS-----TYP--R 85 (419)
T ss_pred CchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecc--eeeeccc-----cCC--c
Confidence 4445678889999888 899999998644321 00000 0112344443321 0 0011110 001 0
Q ss_pred hHHHHHHHHHhhHHHHHhhhhcCCcEEEEcCCCcchHHHHHH-cCCceEEEecc
Q 019759 90 VPYLKKAHDLLQLPLTNFLQDSRVNWIIHDFISHWLPPVAAQ-LGVNSVFFSIY 142 (336)
Q Consensus 90 ~~~~~~~~~~~~~~~~~ll~~~~~D~vv~D~~~~~~~~vA~~-~~iP~v~~~~~ 142 (336)
+..+.+....+...++.+ ...+||++|.+.-.+.++.+++. .++|+|.+.-.
T Consensus 86 ~~~~~~~~~~~~~~~~~~-~~~~pDv~i~~~g~~~~~~~~~~~~~~~~i~y~h~ 138 (419)
T cd03806 86 FTLLGQALGSMILGLEAL-LKLVPDIFIDTMGYPFTYPLVRLLGGCPVGAYVHY 138 (419)
T ss_pred eeeHHHHHHHHHHHHHHH-HhcCCCEEEEcCCcccHHHHHHHhcCCeEEEEecC
Confidence 111122222222233332 23479999988877777777775 46898887654
No 84
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=82.26 E-value=6.2 Score=35.67 Aligned_cols=30 Identities=13% Similarity=0.009 Sum_probs=26.2
Q ss_pred CCccchHHHHHHHHHHHhCCCeEEEEeCCC
Q 019759 17 LAYGHIMPFFQVAMFLAEKGHHVSYISTPK 46 (336)
Q Consensus 17 p~~gH~~p~l~la~~La~rGh~VT~~t~~~ 46 (336)
..-|.-.-+..++++|+++||+||+++...
T Consensus 10 ~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~ 39 (358)
T cd03812 10 NRGGIETFIMNYYRNLDRSKIQFDFLVTSK 39 (358)
T ss_pred CCccHHHHHHHHHHhcCccceEEEEEEeCC
Confidence 455888999999999999999999998754
No 85
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=82.14 E-value=12 Score=32.75 Aligned_cols=98 Identities=10% Similarity=0.061 Sum_probs=50.1
Q ss_pred HHHHHHHHHhC---CCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHhh
Q 019759 25 FFQVAMFLAEK---GHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPIHKVPYLKKAHDLLQ 101 (336)
Q Consensus 25 ~l~la~~La~r---Gh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (336)
+..|++.|... |++|++++|....+-.-... +....++...+. ++. +. ....+. .| ..
T Consensus 16 l~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghai-T~~~pl~~~~~~----~~~---ya-v~GTPa--------DC--V~ 76 (261)
T PRK13931 16 LEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCI-SYTHPMMIAELG----PRR---FA-AEGSPA--------DC--VL 76 (261)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccc-cCCCCeEEEEeC----CCe---EE-EcCchH--------HH--HH
Confidence 66777777663 47999999865543221111 112344544432 110 00 011110 01 11
Q ss_pred HHHHHhhhhcCCcEEEEc----------CCCcchH---HHHHHcCCceEEEec
Q 019759 102 LPLTNFLQDSRVNWIIHD----------FISHWLP---PVAAQLGVNSVFFSI 141 (336)
Q Consensus 102 ~~~~~ll~~~~~D~vv~D----------~~~~~~~---~vA~~~~iP~v~~~~ 141 (336)
-.+..++...+||+||+- .+++..+ .-|..+|||.|.++.
T Consensus 77 lal~~~~~~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 77 AALYDVMKDAPPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred HHHHHhcCCCCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 123334433479999984 4444433 346788999999875
No 86
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=81.93 E-value=12 Score=30.45 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=24.1
Q ss_pred hhhhcCCcEEEEcCCCcc--hHHHHHHc------CCceEEEec
Q 019759 107 FLQDSRVNWIIHDFISHW--LPPVAAQL------GVNSVFFSI 141 (336)
Q Consensus 107 ll~~~~~D~vv~D~~~~~--~~~vA~~~------~iP~v~~~~ 141 (336)
++.+.+||+||+-.-..+ ...+|+-+ +.++|.+=+
T Consensus 87 il~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 87 ILRRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred HHHHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 334558999999986555 33567777 778777643
No 87
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=81.71 E-value=2.5 Score=37.18 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=31.3
Q ss_pred EEEEEcC----CCccchHHHHHHHHHHHhCCCeEEEEeCCC
Q 019759 10 HIAMFPW----LAYGHIMPFFQVAMFLAEKGHHVSYISTPK 46 (336)
Q Consensus 10 ~il~~~~----p~~gH~~p~l~la~~La~rGh~VT~~t~~~ 46 (336)
||+|++- .|.||+.-++.||++|.+||..++|++...
T Consensus 2 ~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~ 42 (318)
T COG3980 2 KVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQD 42 (318)
T ss_pred cEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccc
Confidence 5677764 456999999999999999999999998654
No 88
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=80.94 E-value=21 Score=31.95 Aligned_cols=37 Identities=19% Similarity=0.131 Sum_probs=28.2
Q ss_pred EEEEEcC--C-CccchHHHHHHHHHHHhCCCeEEEEeCCC
Q 019759 10 HIAMFPW--L-AYGHIMPFFQVAMFLAEKGHHVSYISTPK 46 (336)
Q Consensus 10 ~il~~~~--p-~~gH~~p~l~la~~La~rGh~VT~~t~~~ 46 (336)
+|+|+.. | ..|--.-...|+++|+++||+|++++...
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 40 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAA 40 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeec
Confidence 3555542 2 34777889999999999999999998643
No 89
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=80.73 E-value=20 Score=31.44 Aligned_cols=82 Identities=21% Similarity=0.220 Sum_probs=49.1
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHhhHHH
Q 019759 25 FFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPIHKVPYLKKAHDLLQLPL 104 (336)
Q Consensus 25 ~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (336)
-..|+++|.++||+|+..+........... ......+. ..+. ...+
T Consensus 12 gr~la~~L~~~g~~v~~s~~t~~~~~~~~~----~g~~~v~~------g~l~------------------------~~~l 57 (256)
T TIGR00715 12 SRAIAKGLIAQGIEILVTVTTSEGKHLYPI----HQALTVHT------GALD------------------------PQEL 57 (256)
T ss_pred HHHHHHHHHhCCCeEEEEEccCCccccccc----cCCceEEE------CCCC------------------------HHHH
Confidence 578999999999999988764433211110 01111110 1110 1235
Q ss_pred HHhhhhcCCcEEEEcCCCcch-------HHHHHHcCCceEEEec
Q 019759 105 TNFLQDSRVNWIIHDFISHWL-------PPVAAQLGVNSVFFSI 141 (336)
Q Consensus 105 ~~ll~~~~~D~vv~D~~~~~~-------~~vA~~~~iP~v~~~~ 141 (336)
.+++++.++|+ |+|...+.+ ..+|+++|+|++-|--
T Consensus 58 ~~~l~~~~i~~-VIDAtHPfA~~is~~a~~a~~~~~ipylR~eR 100 (256)
T TIGR00715 58 REFLKRHSIDI-LVDATHPFAAQITTNATAVCKELGIPYVRFER 100 (256)
T ss_pred HHHHHhcCCCE-EEEcCCHHHHHHHHHHHHHHHHhCCcEEEEEC
Confidence 66777778885 556666665 4578899999998853
No 90
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=80.36 E-value=14 Score=32.29 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCC
Q 019759 25 FFQVAMFLAEKGHHVSYISTPKNI 48 (336)
Q Consensus 25 ~l~la~~La~rGh~VT~~t~~~~~ 48 (336)
+..|+++|.+ +|+|+++.+....
T Consensus 16 l~aL~~~l~~-~~~V~VvAP~~~~ 38 (253)
T PRK13933 16 INTLAELLSK-YHEVIIVAPENQR 38 (253)
T ss_pred HHHHHHHHHh-CCcEEEEccCCCC
Confidence 7888998865 6899999886554
No 91
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=79.80 E-value=24 Score=29.40 Aligned_cols=103 Identities=12% Similarity=0.097 Sum_probs=59.6
Q ss_pred CceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC--CCCCCCCCeEEEecCCCCCCCCCCCCCCCCC
Q 019759 7 QKLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQ--IPTNLSSRLSYIQLPLPQLDGLPEGAESTAE 84 (336)
Q Consensus 7 ~~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 84 (336)
++-.|.++...+.|=....+.+|.+.+.+|++|.++-.-+....--. .. ...+++++.... .++....+ .
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l-~~l~~v~~~~~g----~~~~~~~~---~ 92 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLL-EFGGGVEFHVMG----TGFTWETQ---D 92 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHH-hcCCCcEEEECC----CCCcccCC---C
Confidence 44579999999999999999999999999999999864322100000 00 011367776654 22111100 0
Q ss_pred CCCCchHHHHHHHHHhhHHHHHhhhhcCCcEEEEcCCC
Q 019759 85 LPIHKVPYLKKAHDLLQLPLTNFLQDSRVNWIIHDFIS 122 (336)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~vv~D~~~ 122 (336)
. .... ......-...++.+.+.++|+||.|=.+
T Consensus 93 -~---~e~~-~~~~~~~~~a~~~l~~~~ydlvVLDEi~ 125 (191)
T PRK05986 93 -R---ERDI-AAAREGWEEAKRMLADESYDLVVLDELT 125 (191)
T ss_pred -c---HHHH-HHHHHHHHHHHHHHhCCCCCEEEEehhh
Confidence 0 0111 1122233344555666689999999643
No 92
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=78.99 E-value=13 Score=32.65 Aligned_cols=25 Identities=12% Similarity=0.119 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCC
Q 019759 23 MPFFQVAMFLAEKGHHVSYISTPKNI 48 (336)
Q Consensus 23 ~p~l~la~~La~rGh~VT~~t~~~~~ 48 (336)
--+..|++.|...| +|+++.|....
T Consensus 14 pGi~aL~~al~~~g-~V~VvAP~~eq 38 (266)
T PRK13934 14 PGLRLLYEFVSPLG-EVDVVAPETPK 38 (266)
T ss_pred HHHHHHHHHHHhCC-cEEEEccCCCC
Confidence 45889999998887 79999886544
No 93
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=78.57 E-value=29 Score=30.10 Aligned_cols=25 Identities=16% Similarity=0.192 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCCCC
Q 019759 24 PFFQVAMFLAEKGHHVSYISTPKNID 49 (336)
Q Consensus 24 p~l~la~~La~rGh~VT~~t~~~~~~ 49 (336)
-+..|+++|.+.| +|+++.+....+
T Consensus 15 Gi~aL~~~l~~~g-~V~VvAP~~~~S 39 (244)
T TIGR00087 15 GIRALYQALKELG-EVTVVAPARQRS 39 (244)
T ss_pred hHHHHHHHHHhCC-CEEEEeCCCCcc
Confidence 3788999999988 899999865543
No 94
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=77.77 E-value=4.7 Score=31.59 Aligned_cols=42 Identities=17% Similarity=0.018 Sum_probs=36.8
Q ss_pred CceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 019759 7 QKLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNI 48 (336)
Q Consensus 7 ~~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~ 48 (336)
++.+|++.+.++-+|-.-..-++..|.++|++|+++-..-..
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~ 43 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQ 43 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCH
Confidence 467899999999999999999999999999999999764443
No 95
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=77.34 E-value=17 Score=32.55 Aligned_cols=106 Identities=20% Similarity=0.200 Sum_probs=64.5
Q ss_pred CccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHH
Q 019759 18 AYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPIHKVPYLKKAH 97 (336)
Q Consensus 18 ~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (336)
-.-|+--+..+-.+|.++||+|.+-+-++. .+.+..+. -++.+..+. +. +.. .+......+..+
T Consensus 9 n~~hvhfFk~lI~elekkG~ev~iT~rd~~--~v~~LLd~--ygf~~~~Ig----k~---g~~---tl~~Kl~~~~eR-- 72 (346)
T COG1817 9 NPPHVHFFKNLIWELEKKGHEVLITCRDFG--VVTELLDL--YGFPYKSIG----KH---GGV---TLKEKLLESAER-- 72 (346)
T ss_pred CcchhhHHHHHHHHHHhCCeEEEEEEeecC--cHHHHHHH--hCCCeEeec----cc---CCc---cHHHHHHHHHHH--
Confidence 345777899999999999999887654332 11111100 155555554 10 000 000011111111
Q ss_pred HHhhHHHHHhhhhcCCcEEEEcCCCcchHHHHHHcCCceEEEeccc
Q 019759 98 DLLQLPLTNFLQDSRVNWIIHDFISHWLPPVAAQLGVNSVFFSIYS 143 (336)
Q Consensus 98 ~~~~~~~~~ll~~~~~D~vv~D~~~~~~~~vA~~~~iP~v~~~~~~ 143 (336)
.-.+-++..+.+||+.+. -..+.+..+|--+|+|.|.+.-..
T Consensus 73 ---~~~L~ki~~~~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 73 ---VYKLSKIIAEFKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred ---HHHHHHHHhhcCCceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 223556777789999999 778888899999999999987554
No 96
>PRK00654 glgA glycogen synthase; Provisional
Probab=76.43 E-value=3.8 Score=39.24 Aligned_cols=36 Identities=19% Similarity=0.035 Sum_probs=27.9
Q ss_pred EEEEEcC---C---CccchHHHHHHHHHHHhCCCeEEEEeCC
Q 019759 10 HIAMFPW---L---AYGHIMPFFQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 10 ~il~~~~---p---~~gH~~p~l~la~~La~rGh~VT~~t~~ 45 (336)
||++++. | .-|.-.....|+++|+++||+|+++++.
T Consensus 2 ~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~ 43 (466)
T PRK00654 2 KILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPG 43 (466)
T ss_pred eEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 5565553 2 2366677899999999999999999974
No 97
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=76.43 E-value=4.1 Score=30.83 Aligned_cols=36 Identities=19% Similarity=0.112 Sum_probs=31.9
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCC
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~ 45 (336)
++++.+.++-.|-....-++..|.++|++|+++-..
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCC
Confidence 478889999999999999999999999999887543
No 98
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=75.79 E-value=3 Score=37.67 Aligned_cols=28 Identities=29% Similarity=0.286 Sum_probs=25.0
Q ss_pred CccchHHHHHHHHHHHhCCCeEEEEeCC
Q 019759 18 AYGHIMPFFQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 18 ~~gH~~p~l~la~~La~rGh~VT~~t~~ 45 (336)
..|+-.....|+++|.++||+|++++..
T Consensus 11 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~ 38 (360)
T cd04951 11 LGGAEKQVVDLADQFVAKGHQVAIISLT 38 (360)
T ss_pred CCCHHHHHHHHHHhcccCCceEEEEEEe
Confidence 3588999999999999999999999753
No 99
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=74.34 E-value=31 Score=30.65 Aligned_cols=30 Identities=13% Similarity=-0.077 Sum_probs=26.1
Q ss_pred CCCccchHHHHHHHHHHHhCCCeEEEEeCC
Q 019759 16 WLAYGHIMPFFQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 16 ~p~~gH~~p~l~la~~La~rGh~VT~~t~~ 45 (336)
+...|+-..+..|+++|.+.||+|.+++..
T Consensus 9 ~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~ 38 (365)
T cd03807 9 LDVGGAERMLVRLLKGLDRDRFEHVVISLT 38 (365)
T ss_pred ccCccHHHHHHHHHHHhhhccceEEEEecC
Confidence 344689999999999999999999999864
No 100
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=74.07 E-value=4.7 Score=36.52 Aligned_cols=37 Identities=11% Similarity=0.075 Sum_probs=30.3
Q ss_pred EEEEEcC-CC-ccchHHHHHHHHHHHhCCCeEEEEeCCC
Q 019759 10 HIAMFPW-LA-YGHIMPFFQVAMFLAEKGHHVSYISTPK 46 (336)
Q Consensus 10 ~il~~~~-p~-~gH~~p~l~la~~La~rGh~VT~~t~~~ 46 (336)
+|+++.. .+ .|+-.-...++++|.++||+|++++...
T Consensus 2 kIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~ 40 (365)
T cd03825 2 KVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEK 40 (365)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeec
Confidence 5666653 33 5899999999999999999999998654
No 101
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=74.05 E-value=47 Score=28.99 Aligned_cols=26 Identities=15% Similarity=0.093 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 019759 23 MPFFQVAMFLAEKGHHVSYISTPKNID 49 (336)
Q Consensus 23 ~p~l~la~~La~rGh~VT~~t~~~~~~ 49 (336)
--+..|++.|.+. |+|+++.+....+
T Consensus 14 ~Gi~aL~~~l~~~-~~V~VvAP~~~qS 39 (250)
T PRK00346 14 PGIRALAEALREL-ADVTVVAPDRERS 39 (250)
T ss_pred hhHHHHHHHHHhC-CCEEEEeCCCCCc
Confidence 3478899999988 7999999865543
No 102
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=74.01 E-value=41 Score=27.26 Aligned_cols=40 Identities=25% Similarity=0.272 Sum_probs=34.5
Q ss_pred CCceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCC
Q 019759 6 RQKLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 6 ~~~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~ 45 (336)
+...+|.+.-.||-|-..-.+.++..|.++|++|-=+-++
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~ 42 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITP 42 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEee
Confidence 3456899999999999999999999999999998766554
No 103
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=73.64 E-value=5.4 Score=35.82 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=26.5
Q ss_pred CccchHHHHHHHHHHHhCCCeEEEEeCCCC
Q 019759 18 AYGHIMPFFQVAMFLAEKGHHVSYISTPKN 47 (336)
Q Consensus 18 ~~gH~~p~l~la~~La~rGh~VT~~t~~~~ 47 (336)
..|+......+++.|+++||+|+++++...
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (375)
T cd03821 13 YGGPVRVVLNLSKALAKLGHEVTVATTDAG 42 (375)
T ss_pred cCCeehHHHHHHHHHHhcCCcEEEEecCCC
Confidence 459999999999999999999999987543
No 104
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=73.61 E-value=6.9 Score=29.84 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=25.7
Q ss_pred EEEEEcCCCcc---chHHHHHHHHHHHhCCCeEEEEeCCC
Q 019759 10 HIAMFPWLAYG---HIMPFFQVAMFLAEKGHHVSYISTPK 46 (336)
Q Consensus 10 ~il~~~~p~~g---H~~p~l~la~~La~rGh~VT~~t~~~ 46 (336)
+|+|+.-|-.+ .-.....++++..+|||+|.++.+..
T Consensus 2 ki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 2 KIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred eEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCc
Confidence 57777766654 34567889999999999999998753
No 105
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=73.13 E-value=16 Score=33.61 Aligned_cols=29 Identities=7% Similarity=0.072 Sum_probs=24.0
Q ss_pred CCccchHHHHHHHHHHHhCCCeEEEEeCC
Q 019759 17 LAYGHIMPFFQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 17 p~~gH~~p~l~la~~La~rGh~VT~~t~~ 45 (336)
.+-|=-.-+..+++.|.+.||+|+++++.
T Consensus 10 ~~GGv~~~~~~l~~~l~~~g~~v~~~~~~ 38 (372)
T cd03792 10 YGGGVAEILHSLVPLMRDLGVDTRWEVIK 38 (372)
T ss_pred CCCcHHHHHHHHHHHHHHcCCCceEEecC
Confidence 44466777889999999999999999863
No 106
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=72.55 E-value=22 Score=33.21 Aligned_cols=100 Identities=19% Similarity=0.282 Sum_probs=66.1
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhC--CCeEEEEe-CCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCC
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEK--GHHVSYIS-TPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELP 86 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~r--Gh~VT~~t-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 86 (336)
-.+-+...+.|-++-...|.++|.++ ++.+++-| |+...+..++. ..+.+...-+|+ | +
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~---~~~~v~h~YlP~---D-~----------- 111 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAAL---FGDSVIHQYLPL---D-L----------- 111 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHH---cCCCeEEEecCc---C-c-----------
Confidence 47777888899999999999999998 77777665 33333332222 112344444452 1 1
Q ss_pred CCchHHHHHHHHHhhHHHHHhhhhcCCc-EEEEcC-CCcchHHHHHHcCCceEEEec
Q 019759 87 IHKVPYLKKAHDLLQLPLTNFLQDSRVN-WIIHDF-ISHWLPPVAAQLGVNSVFFSI 141 (336)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~ll~~~~~D-~vv~D~-~~~~~~~vA~~~~iP~v~~~~ 141 (336)
...+.++++..+|| +|++|. +.+....-+++.|+|.+.++.
T Consensus 112 --------------~~~v~rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNa 154 (419)
T COG1519 112 --------------PIAVRRFLRKWRPKLLIIMETELWPNLINELKRRGIPLVLVNA 154 (419)
T ss_pred --------------hHHHHHHHHhcCCCEEEEEeccccHHHHHHHHHcCCCEEEEee
Confidence 12466677788887 566777 444455889999999998865
No 107
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=71.10 E-value=6.3 Score=37.77 Aligned_cols=37 Identities=16% Similarity=0.055 Sum_probs=28.7
Q ss_pred EEEEEcC---C---CccchHHHHHHHHHHHhCCCeEEEEeCCC
Q 019759 10 HIAMFPW---L---AYGHIMPFFQVAMFLAEKGHHVSYISTPK 46 (336)
Q Consensus 10 ~il~~~~---p---~~gH~~p~l~la~~La~rGh~VT~~t~~~ 46 (336)
||++++. | .-|--..+..|+++|+++||+|.++++..
T Consensus 2 ~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y 44 (473)
T TIGR02095 2 RVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAY 44 (473)
T ss_pred eEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 5666663 3 23666778999999999999999999743
No 108
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=70.37 E-value=10 Score=30.55 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=29.2
Q ss_pred EEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEe
Q 019759 272 VVYAAFGTEMTLSQELLHELAYGLEKSGLPFIWIIK 307 (336)
Q Consensus 272 VVyvSfGS~~~~~~~~~~~ia~al~~~~~~~lW~~r 307 (336)
.+|+|+||+..-+.+++++-..+|.+.+.--++...
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~S 38 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAVS 38 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 689999999998889999999999988754355543
No 109
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=70.34 E-value=28 Score=32.19 Aligned_cols=120 Identities=8% Similarity=0.046 Sum_probs=60.1
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhC-CCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCCC
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEK-GHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPIH 88 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~r-Gh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (336)
+|+++. ..+..+.=|..+.++|.+. +.++.++.+-.+... +.+... ..+..-.++.. ....-.... +-...
T Consensus 2 ki~~v~-GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~--~~g~~~-~~~~~~~~~~~--~~~~~~~~~--~~~~~ 73 (365)
T TIGR03568 2 KICVVT-GTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSP--EYGNTV-NEIEKDGFDID--EKIEILLDS--DSNAG 73 (365)
T ss_pred eEEEEE-ecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCh--hhccHH-HHHHHcCCCCC--CccccccCC--CCCCC
Confidence 344443 6666777778888888874 788877765444321 110000 01111111100 000000000 00001
Q ss_pred chHHHHHHHHHhhHHHHHhhhhcCCcEEEEcC--CCcc-hHHHHHHcCCceEEEec
Q 019759 89 KVPYLKKAHDLLQLPLTNFLQDSRVNWIIHDF--ISHW-LPPVAAQLGVNSVFFSI 141 (336)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~ll~~~~~D~vv~D~--~~~~-~~~vA~~~~iP~v~~~~ 141 (336)
...........+.+++.+.+||+||+=. +... +..+|..++||++-+-.
T Consensus 74 ----~~~~~~~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~Hvea 125 (365)
T TIGR03568 74 ----MAKSMGLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHG 125 (365)
T ss_pred ----HHHHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEEC
Confidence 1122223345677788888999888866 3333 34788999999995543
No 110
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=69.40 E-value=7.6 Score=33.69 Aligned_cols=27 Identities=26% Similarity=0.164 Sum_probs=22.2
Q ss_pred cchHHHHHHHHHHHhCCCeEEEEeCCC
Q 019759 20 GHIMPFFQVAMFLAEKGHHVSYISTPK 46 (336)
Q Consensus 20 gH~~p~l~la~~La~rGh~VT~~t~~~ 46 (336)
|--...-.|+++|+++||+|+++++..
T Consensus 17 GLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 17 GLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred cHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 566778999999999999999999853
No 111
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=68.79 E-value=14 Score=33.83 Aligned_cols=110 Identities=12% Similarity=0.021 Sum_probs=59.5
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhC-CCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCC-CCCCCCCCCCCCCC
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEK-GHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLD-GLPEGAESTAELPI 87 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~r-Gh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~ 87 (336)
+|+++. ..+.|+.=+..+.++|.++ +.++.++.+-.+....... . ..+.++ .+ .+.-+.. ..
T Consensus 2 ~i~~~~-gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~--------~-~~~~i~-~~~~~~~~~~-----~~ 65 (365)
T TIGR00236 2 KVSIVL-GTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQV--------L-DLFHLP-PDYDLNIMSP-----GQ 65 (365)
T ss_pred eEEEEE-ecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHH--------H-HhcCCC-CCeeeecCCC-----CC
Confidence 455544 7788899999999999987 5666666554333211111 0 001110 00 0000000 00
Q ss_pred CchHHHHHHHHHhhHHHHHhhhhcCCcEEEEcC--CCcc-hHHHHHHcCCceEEE
Q 019759 88 HKVPYLKKAHDLLQLPLTNFLQDSRVNWIIHDF--ISHW-LPPVAAQLGVNSVFF 139 (336)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~ll~~~~~D~vv~D~--~~~~-~~~vA~~~~iP~v~~ 139 (336)
.+ ..........+.+++++.+||+|++-. .... +..+|..+|+|++.+
T Consensus 66 ~~----~~~~~~~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 66 TL----GEITSNMLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred CH----HHHHHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 11 111112235667788888999999864 3223 456789999999865
No 112
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=68.75 E-value=54 Score=27.40 Aligned_cols=38 Identities=13% Similarity=0.038 Sum_probs=29.7
Q ss_pred eEEEEEc-CCCccchHHHHHHHHHHHhCCCeEEEEeCCC
Q 019759 9 LHIAMFP-WLAYGHIMPFFQVAMFLAEKGHHVSYISTPK 46 (336)
Q Consensus 9 ~~il~~~-~p~~gH~~p~l~la~~La~rGh~VT~~t~~~ 46 (336)
..+-++. .+..|-..-++.-++....+|-+|.++++.-
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~i 42 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAI 42 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEeccc
Confidence 4444444 4556889999999999999999999998743
No 113
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=68.56 E-value=76 Score=27.72 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCCC
Q 019759 24 PFFQVAMFLAEKGHHVSYISTPKNI 48 (336)
Q Consensus 24 p~l~la~~La~rGh~VT~~t~~~~~ 48 (336)
-+..|++.|++ +|+|+++++....
T Consensus 15 Gi~aL~~~l~~-~~~V~VvAP~~~q 38 (253)
T PRK13935 15 GIIILAEYLSE-KHEVFVVAPDKER 38 (253)
T ss_pred HHHHHHHHHHh-CCcEEEEccCCCC
Confidence 37788888865 5799999886544
No 114
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=68.34 E-value=58 Score=29.40 Aligned_cols=38 Identities=26% Similarity=0.270 Sum_probs=25.9
Q ss_pred HHHHhhhhcCCcEEEEcCCCcc--hHHHHHHcCCceEEEe
Q 019759 103 PLTNFLQDSRVNWIIHDFISHW--LPPVAAQLGVNSVFFS 140 (336)
Q Consensus 103 ~~~~ll~~~~~D~vv~D~~~~~--~~~vA~~~~iP~v~~~ 140 (336)
.+..++++.+||+|.+-..... +..+++++|+|+|...
T Consensus 73 ~~~~~~~~~~~dvvh~~~~~~~~~~~~~~~~~~~p~i~~~ 112 (367)
T cd05844 73 QLRRLLRRHRPDLVHAHFGFDGVYALPLARRLGVPLVVTF 112 (367)
T ss_pred HHHHHHHhhCCCEEEeccCchHHHHHHHHHHcCCCEEEEE
Confidence 3444667779999988543222 3467889999998743
No 115
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=66.83 E-value=13 Score=27.90 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=32.0
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeC
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYIST 44 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~ 44 (336)
++++...+..-|-.-+.-++..|.++||+|.++-.
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~ 36 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDA 36 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEES
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECC
Confidence 68889999999999999999999999999998843
No 116
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=66.71 E-value=6.4 Score=36.67 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=25.1
Q ss_pred cC-CCccchHHHHHHHHHHHhCCCeEEEEeCCC
Q 019759 15 PW-LAYGHIMPFFQVAMFLAEKGHHVSYISTPK 46 (336)
Q Consensus 15 ~~-p~~gH~~p~l~la~~La~rGh~VT~~t~~~ 46 (336)
|+ |-.|.-+=+..+.++|+++ |+||++|...
T Consensus 9 P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~ 40 (397)
T TIGR03087 9 PYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVD 40 (397)
T ss_pred CCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCC
Confidence 44 3448999999999999876 9999998643
No 117
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=65.19 E-value=71 Score=25.70 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=30.2
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEe
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYIS 43 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t 43 (336)
-|.+.+.++.|=....+.+|.+.+.+|++|.++-
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQ 37 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQ 37 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4677888999999999999999999999999964
No 118
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=63.35 E-value=20 Score=24.95 Aligned_cols=33 Identities=24% Similarity=0.171 Sum_probs=27.7
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhCCCeEEEE
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYI 42 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~ 42 (336)
-++++......|..-+..+|+.|+++|+.|..+
T Consensus 17 ~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 17 AVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 466666677799999999999999999988754
No 119
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=63.29 E-value=14 Score=28.35 Aligned_cols=36 Identities=14% Similarity=0.020 Sum_probs=27.5
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCC
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPK 46 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~ 46 (336)
||++...++.+=+. ...+.++|.++|++|+++.++.
T Consensus 2 ~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~ 37 (129)
T PF02441_consen 2 RILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPS 37 (129)
T ss_dssp EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHH
T ss_pred EEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCc
Confidence 66666666644444 9999999999999999998754
No 120
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=62.99 E-value=1e+02 Score=26.80 Aligned_cols=39 Identities=13% Similarity=0.267 Sum_probs=29.0
Q ss_pred HHHHHhhhhcCCcEEEEcCCCcch-------HHHHHHcCCceEEEec
Q 019759 102 LPLTNFLQDSRVNWIIHDFISHWL-------PPVAAQLGVNSVFFSI 141 (336)
Q Consensus 102 ~~~~~ll~~~~~D~vv~D~~~~~~-------~~vA~~~~iP~v~~~~ 141 (336)
+.+.+++++.++++ |+|.--+++ ..+|+++|+|++-|--
T Consensus 55 ~~l~~~l~~~~i~~-VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR 100 (248)
T PRK08057 55 EGLAAYLREEGIDL-VIDATHPYAAQISANAAAACRALGIPYLRLER 100 (248)
T ss_pred HHHHHHHHHCCCCE-EEECCCccHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 45667777778887 557766665 3568899999998864
No 121
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=62.73 E-value=8.2 Score=31.98 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=24.4
Q ss_pred EEEEEcCCCccchHHH------------HHHHHHHHhCCCeEEEEeCCC
Q 019759 10 HIAMFPWLAYGHIMPF------------FQVAMFLAEKGHHVSYISTPK 46 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~------------l~la~~La~rGh~VT~~t~~~ 46 (336)
+|++...|.+-++.|. ..||+++..||++||+++++.
T Consensus 5 ~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 5 KVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred EEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 4555555555555543 478999999999999999863
No 122
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=62.12 E-value=12 Score=29.63 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=31.4
Q ss_pred CCeEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEeC
Q 019759 269 NNSVVYAAFGTEMTLSQELLHELAYGLEKSGLPFIWIIKN 308 (336)
Q Consensus 269 ~~~VVyvSfGS~~~~~~~~~~~ia~al~~~~~~~lW~~r~ 308 (336)
..-+|.|++||......++++++.+.+. .+.+++|+--.
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~~ 88 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNPH 88 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEECC
Confidence 4569999999999888999999999885 35788886543
No 123
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=62.03 E-value=17 Score=30.39 Aligned_cols=42 Identities=14% Similarity=-0.086 Sum_probs=36.7
Q ss_pred CceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 019759 7 QKLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNI 48 (336)
Q Consensus 7 ~~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~ 48 (336)
++.+|++.+.++--|-....-++..|..+|++|+++...-+.
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~ 124 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPI 124 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCH
Confidence 456899999999999999999999999999999999765443
No 124
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=61.27 E-value=21 Score=32.10 Aligned_cols=41 Identities=7% Similarity=0.109 Sum_probs=35.1
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhC--CCeEEEEeCCCCCCC
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEK--GHHVSYISTPKNIDR 50 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~r--Gh~VT~~t~~~~~~~ 50 (336)
+|+++-...-|.+.-...+.+.|.++ +.+||+++.+.....
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~ 43 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADI 43 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhh
Confidence 47888888999999999999999997 899999998655433
No 125
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=60.05 E-value=21 Score=32.58 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=32.6
Q ss_pred HHHHHHHHhhHHHHHhhhhcCCcEEEEcCCCcc------h----HHHHHHcCCceEE
Q 019759 92 YLKKAHDLLQLPLTNFLQDSRVNWIIHDFISHW------L----PPVAAQLGVNSVF 138 (336)
Q Consensus 92 ~~~~~~~~~~~~~~~ll~~~~~D~vv~D~~~~~------~----~~vA~~~~iP~v~ 138 (336)
++....+...+.+.+++++.+||++|+-+.+.. | ..+.++++||++.
T Consensus 60 yf~en~eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vt 116 (349)
T PF07355_consen 60 YFNENKEEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVT 116 (349)
T ss_pred hhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEE
Confidence 444444445566777888889999999984433 1 2356689999875
No 126
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=59.11 E-value=18 Score=30.34 Aligned_cols=38 Identities=18% Similarity=0.024 Sum_probs=34.3
Q ss_pred ceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCC
Q 019759 8 KLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 8 ~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~ 45 (336)
+.++++.+.++-.|-....-++..|.++|++|+++...
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~ 119 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRD 119 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCC
Confidence 56899999999999999999999999999999987654
No 127
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=58.61 E-value=14 Score=34.27 Aligned_cols=31 Identities=13% Similarity=0.070 Sum_probs=23.7
Q ss_pred EEEcCCCccchHHHHHHHHHHHhC-CC--eEEEE
Q 019759 12 AMFPWLAYGHIMPFFQVAMFLAEK-GH--HVSYI 42 (336)
Q Consensus 12 l~~~~p~~gH~~p~l~la~~La~r-Gh--~VT~~ 42 (336)
++...-|.||...-.+|.++|.++ |. +|+++
T Consensus 3 ils~~~G~GH~~aa~al~~~~~~~~~~~~~v~~~ 36 (382)
T PLN02605 3 ILMSDTGGGHRASAEAIKDAFQLEFGDEYQVFIV 36 (382)
T ss_pred EEEEcCCcChHHHHHHHHHHHHhhcCCCeeEEEE
Confidence 444568889999999999999875 54 45554
No 128
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=57.64 E-value=1.2e+02 Score=27.78 Aligned_cols=22 Identities=14% Similarity=-0.063 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCC
Q 019759 23 MPFFQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 23 ~p~l~la~~La~rGh~VT~~t~~ 45 (336)
.-+..|+++|+++ |+|++++..
T Consensus 20 ~~v~~l~~~l~~~-~~v~v~~~~ 41 (388)
T TIGR02149 20 VHVEELTRELARL-MDVDVRCFG 41 (388)
T ss_pred HHHHHHHHHHHHh-cCeeEEcCC
Confidence 4577999999987 788877753
No 129
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=56.41 E-value=87 Score=29.66 Aligned_cols=29 Identities=14% Similarity=0.020 Sum_probs=24.7
Q ss_pred EcCCCccchHHHHHHHHHHHhCCCeEEEE
Q 019759 14 FPWLAYGHIMPFFQVAMFLAEKGHHVSYI 42 (336)
Q Consensus 14 ~~~p~~gH~~p~l~la~~La~rGh~VT~~ 42 (336)
-|..+.|-....+.|++.|++||++|--+
T Consensus 7 g~~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 7 GTSSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred cCCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 34677799999999999999999998644
No 130
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=55.71 E-value=40 Score=27.16 Aligned_cols=42 Identities=14% Similarity=0.072 Sum_probs=27.8
Q ss_pred hhHHHHHhhhhcCCcEEEEcCCCcchH--HHHH---Hc-CCceEEEec
Q 019759 100 LQLPLTNFLQDSRVNWIIHDFISHWLP--PVAA---QL-GVNSVFFSI 141 (336)
Q Consensus 100 ~~~~~~~ll~~~~~D~vv~D~~~~~~~--~vA~---~~-~iP~v~~~~ 141 (336)
..+.+.+++++.+||+||+-..++... ...+ .+ ++|.+.+.|
T Consensus 77 ~~~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 77 FARRLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 456788889999999999998654433 2222 23 467666655
No 131
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=54.67 E-value=11 Score=31.87 Aligned_cols=38 Identities=21% Similarity=0.127 Sum_probs=30.8
Q ss_pred EEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 019759 11 IAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNI 48 (336)
Q Consensus 11 il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~ 48 (336)
+++----+.|--.-.+.++-.+...||.||+++++...
T Consensus 31 ~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~ 68 (235)
T COG2874 31 ILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTV 68 (235)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhH
Confidence 34444567788888999999999999999999997543
No 132
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=54.56 E-value=17 Score=30.16 Aligned_cols=100 Identities=17% Similarity=0.176 Sum_probs=48.2
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhC--CCeEEEEeCCCCCC-CCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCC
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEK--GHHVSYISTPKNID-RLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELP 86 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~r--Gh~VT~~t~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 86 (336)
.++-+...+-|=++-...|+++|.++ |++|.+-++..... ...+. ..+.+...-+|+ |
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~---~~~~v~~~~~P~---D------------- 82 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKL---LPDRVDVQYLPL---D------------- 82 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG----GGG-SEEE------S-------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHh---CCCCeEEEEeCc---c-------------
Confidence 56666677889999999999999987 78777655422221 11111 001222222331 1
Q ss_pred CCchHHHHHHHHHhhHHHHHhhhhcCCcE-EEEcC-CCcchHHHHHHcCCceEEEec
Q 019759 87 IHKVPYLKKAHDLLQLPLTNFLQDSRVNW-IIHDF-ISHWLPPVAAQLGVNSVFFSI 141 (336)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~ll~~~~~D~-vv~D~-~~~~~~~vA~~~~iP~v~~~~ 141 (336)
....++++++..+||+ |++|. +.+-....|++.|||++.++.
T Consensus 83 -------------~~~~~~rfl~~~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 83 -------------FPWAVRRFLDHWRPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp -------------SHHHHHHHHHHH--SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred -------------CHHHHHHHHHHhCCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 1234566777778875 45555 333345788999999999865
No 133
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=52.87 E-value=15 Score=31.42 Aligned_cols=25 Identities=28% Similarity=0.293 Sum_probs=19.8
Q ss_pred chHHHHHHHHHHHhCCCeEEEEeCC
Q 019759 21 HIMPFFQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 21 H~~p~l~la~~La~rGh~VT~~t~~ 45 (336)
|+..|.+.+.+|.++|++|+++..+
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 6778999999999999999999764
No 134
>PRK06321 replicative DNA helicase; Provisional
Probab=52.71 E-value=45 Score=32.12 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=31.3
Q ss_pred EEEEcCCCccchHHHHHHHHHHHh-CCCeEEEEeCCCCC
Q 019759 11 IAMFPWLAYGHIMPFFQVAMFLAE-KGHHVSYISTPKNI 48 (336)
Q Consensus 11 il~~~~p~~gH~~p~l~la~~La~-rGh~VT~~t~~~~~ 48 (336)
+++..-|+.|=..-.+.+|...+. .|..|.|+|.+-..
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~ 267 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTV 267 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence 455667999999999999999985 58999999987544
No 135
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=52.43 E-value=31 Score=33.64 Aligned_cols=43 Identities=12% Similarity=0.185 Sum_probs=38.5
Q ss_pred CCCeEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEeCCC
Q 019759 268 ENNSVVYAAFGTEMTLSQELLHELAYGLEKSGLPFIWIIKNRP 310 (336)
Q Consensus 268 ~~~~VVyvSfGS~~~~~~~~~~~ia~al~~~~~~~lW~~r~~~ 310 (336)
+++.|||.||+....+.++-+..=.+=|...+-.++|-...++
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~ 469 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGD 469 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 5788999999999999999999888888999999999987753
No 136
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=52.42 E-value=31 Score=29.28 Aligned_cols=41 Identities=17% Similarity=0.037 Sum_probs=36.3
Q ss_pred CceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCC
Q 019759 7 QKLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKN 47 (336)
Q Consensus 7 ~~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~ 47 (336)
++.+|++.+.++-.|-+...-++..|..+|++|+++-..-+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp 127 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVP 127 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 45689999999999999999999999999999999876443
No 137
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.16 E-value=38 Score=33.49 Aligned_cols=43 Identities=16% Similarity=0.356 Sum_probs=39.0
Q ss_pred CCCeEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEeCCC
Q 019759 268 ENNSVVYAAFGTEMTLSQELLHELAYGLEKSGLPFIWIIKNRP 310 (336)
Q Consensus 268 ~~~~VVyvSfGS~~~~~~~~~~~ia~al~~~~~~~lW~~r~~~ 310 (336)
++.-|||-+|-....++++.++.-++-|++.+-.+||.+|.+-
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa 798 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPA 798 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccc
Confidence 4566899999888899999999999999999999999999995
No 138
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=52.15 E-value=32 Score=32.28 Aligned_cols=48 Identities=8% Similarity=0.128 Sum_probs=32.9
Q ss_pred HHHHHHHHhhHHHHHhhhhcCCcEEEEcCCCc-ch---------HHHHHHcCCceEEE
Q 019759 92 YLKKAHDLLQLPLTNFLQDSRVNWIIHDFISH-WL---------PPVAAQLGVNSVFF 139 (336)
Q Consensus 92 ~~~~~~~~~~~~~~~ll~~~~~D~vv~D~~~~-~~---------~~vA~~~~iP~v~~ 139 (336)
||....+...+.+.+++++.+||++|+.+.+. .- ..+.++++||.+.-
T Consensus 56 Yf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vta 113 (431)
T TIGR01917 56 FFGENLEEAKAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTA 113 (431)
T ss_pred hhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 44444455556677788888999999998443 31 23456899998763
No 139
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=52.14 E-value=32 Score=32.25 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=32.8
Q ss_pred HHHHHHHHhhHHHHHhhhhcCCcEEEEcCCCc-ch---------HHHHHHcCCceEEE
Q 019759 92 YLKKAHDLLQLPLTNFLQDSRVNWIIHDFISH-WL---------PPVAAQLGVNSVFF 139 (336)
Q Consensus 92 ~~~~~~~~~~~~~~~ll~~~~~D~vv~D~~~~-~~---------~~vA~~~~iP~v~~ 139 (336)
||....+...+.+.+++++.+||++|+.+.+. .- ..+.++++||.+.-
T Consensus 56 Yf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~ 113 (431)
T TIGR01918 56 FFGENLEEAVARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTS 113 (431)
T ss_pred hhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 44444444556677788888999999998443 31 23456899998763
No 140
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=52.10 E-value=28 Score=31.16 Aligned_cols=36 Identities=19% Similarity=0.050 Sum_probs=25.8
Q ss_pred EEEEcCCCc-cchHHHHHHHHHHHhCCCeEEEEeCCC
Q 019759 11 IAMFPWLAY-GHIMPFFQVAMFLAEKGHHVSYISTPK 46 (336)
Q Consensus 11 il~~~~p~~-gH~~p~l~la~~La~rGh~VT~~t~~~ 46 (336)
|++++.-.. +--..+..+++.|.++||+|++++...
T Consensus 2 i~~~~~~~~~~~~~~~~~~~~~L~~~g~~v~v~~~~~ 38 (355)
T cd03799 2 IAYLVKEFPRLSETFILREILALEAAGHEVEIFSLRP 38 (355)
T ss_pred EEEECCCCCCcchHHHHHHHHHHHhCCCeEEEEEecC
Confidence 455543222 344668999999999999999998643
No 141
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=51.98 E-value=14 Score=30.54 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=21.8
Q ss_pred EEEEEcCCCc-cchHHHHHHHHHHHhCCCeEEEEeCC
Q 019759 10 HIAMFPWLAY-GHIMPFFQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 10 ~il~~~~p~~-gH~~p~l~la~~La~rGh~VT~~t~~ 45 (336)
+|.++...|+ |+ .|.++..+|||+||-++-.
T Consensus 2 KIaiIgAsG~~Gs-----~i~~EA~~RGHeVTAivRn 33 (211)
T COG2910 2 KIAIIGASGKAGS-----RILKEALKRGHEVTAIVRN 33 (211)
T ss_pred eEEEEecCchhHH-----HHHHHHHhCCCeeEEEEeC
Confidence 4555544333 43 5789999999999999853
No 142
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=51.98 E-value=25 Score=27.01 Aligned_cols=38 Identities=11% Similarity=0.324 Sum_probs=28.7
Q ss_pred CeEEEEEeCccccCCHHHHHHHHHHHHh-CC-CceEEEEe
Q 019759 270 NSVVYAAFGTEMTLSQELLHELAYGLEK-SG-LPFIWIIK 307 (336)
Q Consensus 270 ~~VVyvSfGS~~~~~~~~~~~ia~al~~-~~-~~~lW~~r 307 (336)
++++.++|||...-..+.+..+++.+.+ .+ .+|-|..-
T Consensus 1 ~aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~aft 40 (127)
T cd03412 1 KAILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFT 40 (127)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 3699999999987556778888888854 33 47778875
No 143
>PRK14099 glycogen synthase; Provisional
Probab=51.55 E-value=25 Score=34.00 Aligned_cols=39 Identities=13% Similarity=-0.037 Sum_probs=31.6
Q ss_pred CceEEEEEcC---CC---ccchHHHHHHHHHHHhCCCeEEEEeCC
Q 019759 7 QKLHIAMFPW---LA---YGHIMPFFQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 7 ~~~~il~~~~---p~---~gH~~p~l~la~~La~rGh~VT~~t~~ 45 (336)
++.+|++++. |. -|--..+-+|.++|+++||+|.+++|-
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~ 46 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPG 46 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4578888874 22 277788999999999999999999984
No 144
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=51.28 E-value=1e+02 Score=28.08 Aligned_cols=38 Identities=29% Similarity=0.248 Sum_probs=30.5
Q ss_pred eEEEEEcC-CCccchHHHHHHHHHHHhCCCeEEEEeCCC
Q 019759 9 LHIAMFPW-LAYGHIMPFFQVAMFLAEKGHHVSYISTPK 46 (336)
Q Consensus 9 ~~il~~~~-p~~gH~~p~l~la~~La~rGh~VT~~t~~~ 46 (336)
.||+||.- +|-|=..---++|..||+.|.+|.+++++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDP 40 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDP 40 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 47777775 666888888899999999998877777753
No 145
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=50.93 E-value=35 Score=32.69 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=35.0
Q ss_pred CCCeEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEeCCC
Q 019759 268 ENNSVVYAAFGTEMTLSQELLHELAYGLEKSGLPFIWIIKNRP 310 (336)
Q Consensus 268 ~~~~VVyvSfGS~~~~~~~~~~~ia~al~~~~~~~lW~~r~~~ 310 (336)
++..|+|-||.+...++++.++.-++-|++.+...||..+.+.
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~ 324 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPA 324 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETST
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCH
Confidence 4567999999999999999999999999999999999998763
No 146
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=50.54 E-value=34 Score=26.00 Aligned_cols=38 Identities=21% Similarity=0.092 Sum_probs=33.6
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCC
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKN 47 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~ 47 (336)
|+++.+.++-.|-.-..-++..|..+|++|+++.+...
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp 38 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQT 38 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 57889999999999999999999999999999876433
No 147
>PLN02316 synthase/transferase
Probab=50.38 E-value=29 Score=36.75 Aligned_cols=40 Identities=15% Similarity=0.061 Sum_probs=30.5
Q ss_pred CceEEEEEcC---CC---ccchHHHHHHHHHHHhCCCeEEEEeCCC
Q 019759 7 QKLHIAMFPW---LA---YGHIMPFFQVAMFLAEKGHHVSYISTPK 46 (336)
Q Consensus 7 ~~~~il~~~~---p~---~gH~~p~l~la~~La~rGh~VT~~t~~~ 46 (336)
+.+||++++. |. -|--....+|+++|+++||+|.++++..
T Consensus 586 ~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y 631 (1036)
T PLN02316 586 PPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKY 631 (1036)
T ss_pred CCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 3468888873 32 2445567899999999999999999854
No 148
>PRK04328 hypothetical protein; Provisional
Probab=50.34 E-value=1.5e+02 Score=25.56 Aligned_cols=40 Identities=10% Similarity=-0.079 Sum_probs=32.1
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNID 49 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~ 49 (336)
-+++.-.|+.|-..-.+.++.+-+++|..+.|++++....
T Consensus 25 ~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~ 64 (249)
T PRK04328 25 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPV 64 (249)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHH
Confidence 4667778999998888888887778899999999865443
No 149
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=48.66 E-value=27 Score=29.20 Aligned_cols=36 Identities=14% Similarity=-0.005 Sum_probs=27.5
Q ss_pred EEEEEcCCCccchHH-HHHHHHHHHhCCCeEEEEeCCC
Q 019759 10 HIAMFPWLAYGHIMP-FFQVAMFLAEKGHHVSYISTPK 46 (336)
Q Consensus 10 ~il~~~~p~~gH~~p-~l~la~~La~rGh~VT~~t~~~ 46 (336)
+|++.-.++ +...- ...++++|.++||+|+++.++.
T Consensus 7 ~IllgVTGs-iaa~k~a~~lir~L~k~G~~V~vv~T~a 43 (196)
T PRK08305 7 RIGFGLTGS-HCTYDEVMPEIEKLVDEGAEVTPIVSYT 43 (196)
T ss_pred EEEEEEcCH-HHHHHHHHHHHHHHHhCcCEEEEEECHh
Confidence 566655554 55555 6899999999999999998764
No 150
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=48.27 E-value=24 Score=30.00 Aligned_cols=36 Identities=22% Similarity=0.187 Sum_probs=24.3
Q ss_pred CCCCCCCceEEEE--EcCCCccchHHHHHHHHHHHhCCCeEEEE
Q 019759 1 MDLQNRQKLHIAM--FPWLAYGHIMPFFQVAMFLAEKGHHVSYI 42 (336)
Q Consensus 1 ~~~~~~~~~~il~--~~~p~~gH~~p~l~la~~La~rGh~VT~~ 42 (336)
||.++.+| .|++ +...|.|| +|++++++.|+.|.-.
T Consensus 1 ~e~~~~~k-~VlItgcs~GGIG~-----ala~ef~~~G~~V~At 38 (289)
T KOG1209|consen 1 SELQSQPK-KVLITGCSSGGIGY-----ALAKEFARNGYLVYAT 38 (289)
T ss_pred CCcccCCC-eEEEeecCCcchhH-----HHHHHHHhCCeEEEEE
Confidence 67776543 3333 33556676 6899999999988643
No 151
>PRK07773 replicative DNA helicase; Validated
Probab=47.47 E-value=49 Score=34.69 Aligned_cols=39 Identities=15% Similarity=0.002 Sum_probs=32.2
Q ss_pred EEEEcCCCccchHHHHHHHHHHHhC-CCeEEEEeCCCCCC
Q 019759 11 IAMFPWLAYGHIMPFFQVAMFLAEK-GHHVSYISTPKNID 49 (336)
Q Consensus 11 il~~~~p~~gH~~p~l~la~~La~r-Gh~VT~~t~~~~~~ 49 (336)
+++..-|+.|=..-.+.+|...|.+ |..|.|++.+....
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ 259 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKE 259 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHH
Confidence 5666789999999999999999865 78999999875543
No 152
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=46.78 E-value=1.2e+02 Score=27.69 Aligned_cols=94 Identities=14% Similarity=0.108 Sum_probs=53.2
Q ss_pred ccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCCCCCchHHHHHHHH
Q 019759 19 YGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLPLPQLDGLPEGAESTAELPIHKVPYLKKAHD 98 (336)
Q Consensus 19 ~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (336)
.|--.-+..|++.|.++||++++++..... ...+.. ...++.++.++. . . . . ....+
T Consensus 14 GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~-~~~~~~--~~~~i~~~~~~~----~-~-~-------~--~~~~~----- 70 (374)
T TIGR03088 14 GGLENGLVNLINHLPADRYRHAVVALTEVS-AFRKRI--QRPDVAFYALHK----Q-P-G-------K--DVAVY----- 70 (374)
T ss_pred CcHHHHHHHHHhhccccccceEEEEcCCCC-hhHHHH--HhcCceEEEeCC----C-C-C-------C--ChHHH-----
Confidence 466688999999999999999888743221 111100 013666666541 0 0 0 0 01111
Q ss_pred HhhHHHHHhhhhcCCcEEEEcCCCcc-hHHHHHHcCCceEE
Q 019759 99 LLQLPLTNFLQDSRVNWIIHDFISHW-LPPVAAQLGVNSVF 138 (336)
Q Consensus 99 ~~~~~~~~ll~~~~~D~vv~D~~~~~-~~~vA~~~~iP~v~ 138 (336)
..+.+++++.+||+|-+-..... +..++...++|...
T Consensus 71 ---~~l~~~l~~~~~Divh~~~~~~~~~~~~~~~~~~~~~i 108 (374)
T TIGR03088 71 ---PQLYRLLRQLRPDIVHTRNLAALEAQLPAALAGVPARI 108 (374)
T ss_pred ---HHHHHHHHHhCCCEEEEcchhHHHHHHHHHhcCCCeEE
Confidence 23455667778999887643222 23456677888533
No 153
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=46.46 E-value=19 Score=28.41 Aligned_cols=40 Identities=20% Similarity=0.424 Sum_probs=31.2
Q ss_pred eEEEEEeCccccCCHHHHHHHHHHHH-----hCCCceEEEEeCCC
Q 019759 271 SVVYAAFGTEMTLSQELLHELAYGLE-----KSGLPFIWIIKNRP 310 (336)
Q Consensus 271 ~VVyvSfGS~~~~~~~~~~~ia~al~-----~~~~~~lW~~r~~~ 310 (336)
.|++|+=|+-.+..-..+++++.... .....|+|++|..+
T Consensus 3 ~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~ 47 (156)
T PF08030_consen 3 NVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDAD 47 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TT
T ss_pred EEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchh
Confidence 58999999999888888888888776 22357999999874
No 154
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=46.40 E-value=30 Score=30.25 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=34.2
Q ss_pred eEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 019759 9 LHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNID 49 (336)
Q Consensus 9 ~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~ 49 (336)
..++|.-.||.|=..-..+||.+|.++|+.|+|++.+....
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~ 146 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLS 146 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 36888888988777778999999998899999998765443
No 155
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=46.26 E-value=20 Score=28.65 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=18.0
Q ss_pred HHHHHHHHhCCCeEEEEeCC
Q 019759 26 FQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 26 l~la~~La~rGh~VT~~t~~ 45 (336)
..+|..|+++||+|++.+.+
T Consensus 12 ~AlA~~la~~g~~V~l~~~~ 31 (157)
T PF01210_consen 12 TALAALLADNGHEVTLWGRD 31 (157)
T ss_dssp HHHHHHHHHCTEEEEEETSC
T ss_pred HHHHHHHHHcCCEEEEEecc
Confidence 47899999999999999875
No 156
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=44.66 E-value=19 Score=34.79 Aligned_cols=42 Identities=7% Similarity=-0.058 Sum_probs=35.7
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCC
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRL 51 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~ 51 (336)
-+++.-.||.|=..-.+.++.+.+++|.++.+++.+.....+
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i 306 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQL 306 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHH
Confidence 467777899999999999999999999999999987654433
No 157
>PLN02939 transferase, transferring glycosyl groups
Probab=44.56 E-value=39 Score=35.37 Aligned_cols=41 Identities=22% Similarity=0.143 Sum_probs=32.8
Q ss_pred CCceEEEEEcC---CC---ccchHHHHHHHHHHHhCCCeEEEEeCCC
Q 019759 6 RQKLHIAMFPW---LA---YGHIMPFFQVAMFLAEKGHHVSYISTPK 46 (336)
Q Consensus 6 ~~~~~il~~~~---p~---~gH~~p~l~la~~La~rGh~VT~~t~~~ 46 (336)
+++.||++++. |. -|--...-+|.++|+++||+|.+++|..
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 45679999874 32 2666778999999999999999999854
No 158
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=44.40 E-value=2.2e+02 Score=24.86 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=32.7
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCC
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKN 47 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~ 47 (336)
-+++.-.|+.|=..-.++++...+++|..+.|++.+..
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESP 75 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 35666789999999999999999999999999998743
No 159
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=44.21 E-value=26 Score=29.94 Aligned_cols=38 Identities=18% Similarity=0.033 Sum_probs=32.5
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCC
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKN 47 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~ 47 (336)
-+++.-.|+.|-..-...++.+.+++|..|.|++.+..
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~ 64 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT 64 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence 46666789999999999999988889999999998644
No 160
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=43.97 E-value=30 Score=33.27 Aligned_cols=38 Identities=24% Similarity=0.193 Sum_probs=32.0
Q ss_pred eEEEEEcCCCccchHHHH------------HHHHHHHhCCCeEEEEeCCC
Q 019759 9 LHIAMFPWLAYGHIMPFF------------QVAMFLAEKGHHVSYISTPK 46 (336)
Q Consensus 9 ~~il~~~~p~~gH~~p~l------------~la~~La~rGh~VT~~t~~~ 46 (336)
.+|++...|.+--+.|.+ .||++++.||++||+++++.
T Consensus 257 kkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 257 RRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 478888888888888874 78999999999999999754
No 161
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=43.89 E-value=29 Score=23.22 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=15.5
Q ss_pred HHHHHHHHhCCCeEEEEe
Q 019759 26 FQVAMFLAEKGHHVSYIS 43 (336)
Q Consensus 26 l~la~~La~rGh~VT~~t 43 (336)
+..|..|+++|++||++=
T Consensus 9 l~aA~~L~~~g~~v~v~E 26 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFE 26 (68)
T ss_dssp HHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHCCCcEEEEe
Confidence 567889999999999984
No 162
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=43.66 E-value=64 Score=27.59 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=21.8
Q ss_pred CCceE-EEEEcCCCc-cchHHHHHHHHHHHhCCCe
Q 019759 6 RQKLH-IAMFPWLAY-GHIMPFFQVAMFLAEKGHH 38 (336)
Q Consensus 6 ~~~~~-il~~~~p~~-gH~~p~l~la~~La~rGh~ 38 (336)
++++| +.+++..|- ||++-+.+|.+.++++|..
T Consensus 27 ~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~ 61 (223)
T PF06415_consen 27 GGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVK 61 (223)
T ss_dssp T--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-S
T ss_pred CCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCC
Confidence 45789 555655444 9999999999999999964
No 163
>PRK13604 luxD acyl transferase; Provisional
Probab=43.45 E-value=55 Score=29.53 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=25.9
Q ss_pred eEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEE
Q 019759 9 LHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYI 42 (336)
Q Consensus 9 ~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~ 42 (336)
...+++..+..++-.-+..+|+.|+++|+.|..+
T Consensus 37 ~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 37 NNTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 3455555566667667999999999999988765
No 164
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=43.29 E-value=1.5e+02 Score=27.80 Aligned_cols=35 Identities=14% Similarity=-0.096 Sum_probs=26.2
Q ss_pred Hhhhhc--CCcEEEEcCCCcchHHHHHHcCCceEEEec
Q 019759 106 NFLQDS--RVNWIIHDFISHWLPPVAAQLGVNSVFFSI 141 (336)
Q Consensus 106 ~ll~~~--~~D~vv~D~~~~~~~~vA~~~~iP~v~~~~ 141 (336)
.++++. ++|+||.=.-+. ...+|...++|++.+.+
T Consensus 85 ~~~~~~~~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~ 121 (396)
T TIGR03492 85 RALRKWAKKGDLIVAVGDIV-PLLFAWLSGKPYAFVGT 121 (396)
T ss_pred HHHHHHhhcCCEEEEECcHH-HHHHHHHcCCCceEEEe
Confidence 345555 899988876554 66788999999988655
No 165
>PF08452 DNAP_B_exo_N: DNA polymerase family B exonuclease domain, N-terminal; InterPro: IPR013660 This domain is found in viral DNA polymerases to the N terminus of DNA polymerase family B exonuclease domains (IPR006133 from INTERPRO). ; GO: 0003887 DNA-directed DNA polymerase activity
Probab=42.39 E-value=19 Score=18.09 Aligned_cols=17 Identities=18% Similarity=0.589 Sum_probs=14.1
Q ss_pred ccccccccCCCCeEEEE
Q 019759 259 VLKDWLDSKENNSVVYA 275 (336)
Q Consensus 259 ~l~~wLd~~~~~~VVyv 275 (336)
.|.+|.+++++.-.+|.
T Consensus 4 kCiNWFE~~ge~r~lyL 20 (22)
T PF08452_consen 4 KCINWFESRGEERFLYL 20 (22)
T ss_pred EEeehhhhCCceeEEEE
Confidence 58899999888877775
No 166
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=42.20 E-value=36 Score=28.22 Aligned_cols=37 Identities=14% Similarity=0.026 Sum_probs=27.5
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCC
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPK 46 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~ 46 (336)
+|++.-.++.|=+.-...+.++|.+.|++|+++.++.
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~ 38 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSET 38 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchh
Confidence 4666655655555555699999999999999997753
No 167
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=40.47 E-value=56 Score=28.64 Aligned_cols=38 Identities=13% Similarity=-0.122 Sum_probs=27.8
Q ss_pred HHhhhhcCCcEEEEcCCCcc------hHHHHHHcCCceEEEecc
Q 019759 105 TNFLQDSRVNWIIHDFISHW------LPPVAAQLGVNSVFFSIY 142 (336)
Q Consensus 105 ~~ll~~~~~D~vv~D~~~~~------~~~vA~~~~iP~v~~~~~ 142 (336)
.+.+++..||+|++-..... ...+|+.+|+|++.+...
T Consensus 105 a~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 105 AAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 33444456999999765544 357999999999987764
No 168
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=40.01 E-value=46 Score=26.93 Aligned_cols=32 Identities=13% Similarity=0.274 Sum_probs=22.5
Q ss_pred CCCCeEEEEEeCccccCCHHHHHHHHHHHHhC
Q 019759 267 KENNSVVYAAFGTEMTLSQELLHELAYGLEKS 298 (336)
Q Consensus 267 ~~~~~VVyvSfGS~~~~~~~~~~~ia~al~~~ 298 (336)
.+.+-.+|+|+||...-+.+.++.-.+.|++.
T Consensus 4 ~~~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~ 35 (163)
T PRK14092 4 SPASALAYVGLGANLGDAAATLRSVLAELAAA 35 (163)
T ss_pred CCcCCEEEEEecCchHhHHHHHHHHHHHHHhC
Confidence 34566789999999865666666666666654
No 169
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=40.00 E-value=58 Score=32.29 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=27.3
Q ss_pred HHHHHhhhhcCCcEEEE-cC--CCcchHHHHHHcCC--ceEEEec
Q 019759 102 LPLTNFLQDSRVNWIIH-DF--ISHWLPPVAAQLGV--NSVFFSI 141 (336)
Q Consensus 102 ~~~~~ll~~~~~D~vv~-D~--~~~~~~~vA~~~~i--P~v~~~~ 141 (336)
+.+.+.+++.+||++|. |. |+....-.+++.|+ |++.+.+
T Consensus 300 ~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVs 344 (608)
T PRK01021 300 RKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVC 344 (608)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEEC
Confidence 34444555568987665 87 55556678889996 9887654
No 170
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=39.70 E-value=47 Score=31.21 Aligned_cols=38 Identities=29% Similarity=0.335 Sum_probs=32.5
Q ss_pred EEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 019759 11 IAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNID 49 (336)
Q Consensus 11 il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~ 49 (336)
|++=--|+-|--.-+++++..||++| +|-|++++....
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~ 133 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQ 133 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHH
Confidence 45555799999999999999999999 999999975543
No 171
>PRK14098 glycogen synthase; Provisional
Probab=39.66 E-value=50 Score=31.96 Aligned_cols=38 Identities=8% Similarity=0.003 Sum_probs=30.7
Q ss_pred ceEEEEEcCC------CccchHHHHHHHHHHHhCCCeEEEEeCC
Q 019759 8 KLHIAMFPWL------AYGHIMPFFQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 8 ~~~il~~~~p------~~gH~~p~l~la~~La~rGh~VT~~t~~ 45 (336)
-.+|++++.- .-|--..+-+|.++|+++||+|.++.|-
T Consensus 5 ~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~ 48 (489)
T PRK14098 5 NFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPK 48 (489)
T ss_pred CcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3678887642 2277788999999999999999999984
No 172
>PRK12342 hypothetical protein; Provisional
Probab=38.99 E-value=61 Score=28.36 Aligned_cols=37 Identities=5% Similarity=-0.164 Sum_probs=27.4
Q ss_pred HhhhhcCCcEEEEcCCCcc------hHHHHHHcCCceEEEecc
Q 019759 106 NFLQDSRVNWIIHDFISHW------LPPVAAQLGVNSVFFSIY 142 (336)
Q Consensus 106 ~ll~~~~~D~vv~D~~~~~------~~~vA~~~~iP~v~~~~~ 142 (336)
+.+++..||+|++.-.... +..+|+.+|+|++.+...
T Consensus 103 ~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 103 AAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 3444446999999765544 358999999999987654
No 173
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=38.67 E-value=58 Score=25.67 Aligned_cols=39 Identities=18% Similarity=0.078 Sum_probs=34.5
Q ss_pred CCceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeC
Q 019759 6 RQKLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYIST 44 (336)
Q Consensus 6 ~~~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~ 44 (336)
+++++|++.+...-||-.-.--+++.|+..|.+|.....
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~ 48 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGL 48 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCC
Confidence 367899999988889999999999999999999987643
No 174
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=38.66 E-value=2.2e+02 Score=23.29 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=31.5
Q ss_pred ceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEe
Q 019759 8 KLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYIS 43 (336)
Q Consensus 8 ~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t 43 (336)
+--|.++...+.|-..-.+.+|-+.+.+|++|.++-
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQ 40 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQ 40 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 356888888999999999999999999999997763
No 175
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=38.25 E-value=49 Score=22.66 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=18.3
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 019759 25 FFQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 25 ~l~la~~La~rGh~VT~~t~~ 45 (336)
-+++|..|+++|.+||++...
T Consensus 11 g~E~A~~l~~~g~~vtli~~~ 31 (80)
T PF00070_consen 11 GIELAEALAELGKEVTLIERS 31 (80)
T ss_dssp HHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHhCcEEEEEecc
Confidence 478999999999999999754
No 176
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=37.99 E-value=65 Score=24.40 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=37.3
Q ss_pred CceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 019759 7 QKLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNI 48 (336)
Q Consensus 7 ~~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~ 48 (336)
.++.|-+.|..|++.+.|.-++...|.+...++.++|+....
T Consensus 45 g~Lql~i~pasGrrkLspt~emi~~l~~geIel~VLttqpDI 86 (144)
T PF10657_consen 45 GKLQLTISPASGRRKLSPTPEMIDKLISGEIELFVLTTQPDI 86 (144)
T ss_pred CceEEEEecCCCccccCCcHHHHHHHhcCceEEEEEccCCCe
Confidence 357899999999999999999999999999999999986543
No 177
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=37.97 E-value=1.7e+02 Score=24.64 Aligned_cols=40 Identities=18% Similarity=0.119 Sum_probs=32.0
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNID 49 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~ 49 (336)
-+++.-.|+.|=..-.+.++.+-+++|..|.|++.+....
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~ 57 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREE 57 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHH
Confidence 3566667888888888888888888899999999876443
No 178
>PRK09620 hypothetical protein; Provisional
Probab=37.49 E-value=34 Score=29.40 Aligned_cols=20 Identities=35% Similarity=0.346 Sum_probs=17.2
Q ss_pred HHHHHHHHhCCCeEEEEeCC
Q 019759 26 FQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 26 l~la~~La~rGh~VT~~t~~ 45 (336)
..||++|.++|++||++...
T Consensus 33 s~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 33 RIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred HHHHHHHHHCCCeEEEEeCC
Confidence 47889999999999999754
No 179
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=36.89 E-value=38 Score=29.07 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=16.5
Q ss_pred HHHHHHHHhCCCeEEEEeC
Q 019759 26 FQVAMFLAEKGHHVSYIST 44 (336)
Q Consensus 26 l~la~~La~rGh~VT~~t~ 44 (336)
.+||++|+++||+||++..
T Consensus 30 ~aLA~~L~~~G~~V~li~r 48 (229)
T PRK06732 30 KIIAETFLAAGHEVTLVTT 48 (229)
T ss_pred HHHHHHHHhCCCEEEEEEC
Confidence 5788999999999999874
No 180
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=36.58 E-value=56 Score=28.72 Aligned_cols=40 Identities=13% Similarity=0.307 Sum_probs=23.2
Q ss_pred CeEEEEEeCccccCCHH-HHHHHHHHHHhC--CCceEEEEeCC
Q 019759 270 NSVVYAAFGTEMTLSQE-LLHELAYGLEKS--GLPFIWIIKNR 309 (336)
Q Consensus 270 ~~VVyvSfGS~~~~~~~-~~~~ia~al~~~--~~~~lW~~r~~ 309 (336)
+.++.+||||...-..+ -+..|-+.+++. ++.|-|.+-..
T Consensus 1 KAIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 1 KAILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 35899999998864444 556666655544 67888986543
No 181
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=36.36 E-value=2.5e+02 Score=23.39 Aligned_cols=104 Identities=13% Similarity=0.079 Sum_probs=57.6
Q ss_pred ceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCC-C-CCCCCCCCCeEEEecCCCCCCCCCCCCCCCCCC
Q 019759 8 KLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRL-P-QIPTNLSSRLSYIQLPLPQLDGLPEGAESTAEL 85 (336)
Q Consensus 8 ~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~-~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 85 (336)
+-=|.+++..++|-...-+.+|-+-+-+|.+|-++-.-+..... . +........+.++..+ +++.+....
T Consensus 28 ~Gli~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~~~~v~~~~~~----~g~tw~~~~---- 99 (198)
T COG2109 28 KGLIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKFGLGVEFHGMG----EGFTWETQD---- 99 (198)
T ss_pred cCeEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhhccceeEEecC----CceeCCCcC----
Confidence 34488899999999999999999988999888887532221000 0 0000011246666554 333222111
Q ss_pred CCCchHHHHHHHHHhhHHHHHhhhhcCCcEEEEcCCCc
Q 019759 86 PIHKVPYLKKAHDLLQLPLTNFLQDSRVNWIIHDFISH 123 (336)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~vv~D~~~~ 123 (336)
. ..-+ ......-+..++++.+.++|+||.|=++.
T Consensus 100 ~---~~d~-~aa~~~w~~a~~~l~~~~ydlviLDEl~~ 133 (198)
T COG2109 100 R---EADI-AAAKAGWEHAKEALADGKYDLVILDELNY 133 (198)
T ss_pred c---HHHH-HHHHHHHHHHHHHHhCCCCCEEEEehhhH
Confidence 0 0111 22222223344566667899999997643
No 182
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=36.01 E-value=34 Score=30.69 Aligned_cols=19 Identities=37% Similarity=0.328 Sum_probs=16.9
Q ss_pred HHHHHHHHhCCCeEEEEeC
Q 019759 26 FQVAMFLAEKGHHVSYIST 44 (336)
Q Consensus 26 l~la~~La~rGh~VT~~t~ 44 (336)
.++|++||+||.+|.+++-
T Consensus 63 KayA~eLAkrG~nvvLIsR 81 (312)
T KOG1014|consen 63 KAYARELAKRGFNVVLISR 81 (312)
T ss_pred HHHHHHHHHcCCEEEEEeC
Confidence 5789999999999998874
No 183
>KOG4513 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=35.92 E-value=63 Score=29.81 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=29.7
Q ss_pred CCceE-EEEEcCCC-ccchHHHHHHHHHHHhCCC---eEEEEe
Q 019759 6 RQKLH-IAMFPWLA-YGHIMPFFQVAMFLAEKGH---HVSYIS 43 (336)
Q Consensus 6 ~~~~~-il~~~~p~-~gH~~p~l~la~~La~rGh---~VT~~t 43 (336)
..++| +.++.-.+ .||+.-+..|.+.|++||. .|.+++
T Consensus 122 ~g~lHlvGlvSDGGVHShidhl~allka~~erg~~ei~vH~~t 164 (531)
T KOG4513|consen 122 DGTLHLVGLVSDGGVHSHIDHLQALLKALAERGAKEIRVHILT 164 (531)
T ss_pred CCeEEEEEEecCCchhhhHHHHHHHHHHHHhcCCceEEEEEec
Confidence 45788 56666554 4999999999999999994 566666
No 184
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=35.85 E-value=98 Score=26.09 Aligned_cols=42 Identities=24% Similarity=0.184 Sum_probs=31.7
Q ss_pred CCceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCC
Q 019759 6 RQKLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKN 47 (336)
Q Consensus 6 ~~~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~ 47 (336)
+.+++|.+=..||-|-..-|+.=|++|.++|.+|.+--.+.+
T Consensus 3 rGrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~veth 44 (211)
T PF02702_consen 3 RGRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETH 44 (211)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---T
T ss_pred CccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCC
Confidence 456889999999999999999999999999999998766544
No 185
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=35.60 E-value=64 Score=27.97 Aligned_cols=30 Identities=17% Similarity=0.019 Sum_probs=21.9
Q ss_pred CcE-EEEcCCCcc-hHHHHHHcCCceEEEecc
Q 019759 113 VNW-IIHDFISHW-LPPVAAQLGVNSVFFSIY 142 (336)
Q Consensus 113 ~D~-vv~D~~~~~-~~~vA~~~~iP~v~~~~~ 142 (336)
||+ +|+|.-.-- |..-|.++|||+|.+.-+
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDT 188 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDT 188 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecC
Confidence 775 566764333 667899999999998654
No 186
>TIGR01498 folK 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase. This model describes the folate biosynthesis enzyme 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase. Alternate names include 6-hydroxymethyl-7,8-dihydropterin diphosphokinase and 7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase (HPPK). The extreme C-terminal region, of typically eight to thirty residues, is not included in the model. This enzyme may be found as a fusion protein with other enzymes of folate biosynthesis.
Probab=35.59 E-value=41 Score=25.93 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=18.2
Q ss_pred EEEEeCccccCCHHHHHHHHHHHHhCC
Q 019759 273 VYAAFGTEMTLSQELLHELAYGLEKSG 299 (336)
Q Consensus 273 VyvSfGS~~~~~~~~~~~ia~al~~~~ 299 (336)
+|+|+||+..-+.+.++.-...|++.+
T Consensus 1 ~~i~lGSN~g~~~~~l~~A~~~L~~~~ 27 (127)
T TIGR01498 1 AYIALGSNLGDRLKNLRAALAALAALP 27 (127)
T ss_pred CEEEEeCCcHhHHHHHHHHHHHHhcCC
Confidence 599999998655555555555665543
No 187
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=35.39 E-value=53 Score=27.07 Aligned_cols=37 Identities=14% Similarity=0.088 Sum_probs=27.8
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCC
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKN 47 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~ 47 (336)
+|++...++.| ..-...+.++|.++|++|.++.++.-
T Consensus 3 ~Ill~vtGsia-a~~~~~li~~L~~~g~~V~vv~T~~A 39 (182)
T PRK07313 3 NILLAVSGSIA-AYKAADLTSQLTKRGYQVTVLMTKAA 39 (182)
T ss_pred EEEEEEeChHH-HHHHHHHHHHHHHCCCEEEEEEChhH
Confidence 56666655544 44489999999999999999987643
No 188
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=35.27 E-value=1.1e+02 Score=25.32 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCCCC-CCCCCCCCCCCCeEEEecC
Q 019759 24 PFFQVAMFLAEKGHHVSYISTPKNID-RLPQIPTNLSSRLSYIQLP 68 (336)
Q Consensus 24 p~l~la~~La~rGh~VT~~t~~~~~~-~~~~~~~~~~~~i~~~~~~ 68 (336)
-...|+..|+++||+||++....... ..... .+++...+|
T Consensus 22 ~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y-----~gv~l~~i~ 62 (185)
T PF09314_consen 22 FVEELAPRLVSKGIDVTVYCRSDYYPYKEFEY-----NGVRLVYIP 62 (185)
T ss_pred HHHHHHHHHhcCCceEEEEEccCCCCCCCccc-----CCeEEEEeC
Confidence 35677888888999999986543321 21111 467777776
No 189
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=34.96 E-value=64 Score=30.55 Aligned_cols=35 Identities=9% Similarity=0.188 Sum_probs=25.5
Q ss_pred HHHhhhhcCCcEEEEcCCCcchHHHHHHcCCceEEEec
Q 019759 104 LTNFLQDSRVNWIIHDFISHWLPPVAAQLGVNSVFFSI 141 (336)
Q Consensus 104 ~~~ll~~~~~D~vv~D~~~~~~~~vA~~~~iP~v~~~~ 141 (336)
+++++++.+||++|.+.+ ...+|+++|+|.+.++.
T Consensus 362 ~~~~i~~~~pdliig~~~---~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 362 VGDMIARTEPELIFGTQM---ERHIGKRLDIPCAVISA 396 (430)
T ss_pred HHHHHHhhCCCEEEecch---hhHHHHHcCCCEEEEeC
Confidence 444555667899998874 45678999999887653
No 190
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.95 E-value=37 Score=30.60 Aligned_cols=52 Identities=12% Similarity=0.187 Sum_probs=35.5
Q ss_pred ccccccccCCCCeEEEEEeCccc-----------------c--CCHHHHHHHHHHHHhCCCceEEEEeCCC
Q 019759 259 VLKDWLDSKENNSVVYAAFGTEM-----------------T--LSQELLHELAYGLEKSGLPFIWIIKNRP 310 (336)
Q Consensus 259 ~l~~wLd~~~~~~VVyvSfGS~~-----------------~--~~~~~~~~ia~al~~~~~~~lW~~r~~~ 310 (336)
.+.+.|++.++-.+|.|.||++- . --+..+++|.+....-..+|+|+==++.
T Consensus 167 ~i~~~l~~~~~~a~vVV~lGaND~q~~~~gd~~~kf~S~~W~~eY~kRvd~~l~ia~~~~~~V~WvGmP~~ 237 (354)
T COG2845 167 AIPELLDKHPKPAAVVVMLGANDRQDFKVGDVYEKFRSDEWTKEYEKRVDAILKIAHTHKVPVLWVGMPPF 237 (354)
T ss_pred HHHHHHHhcCCccEEEEEecCCCHHhcccCCeeeecCchHHHHHHHHHHHHHHHHhcccCCcEEEeeCCCc
Confidence 34555666656667777777753 1 1235678899999888999999965554
No 191
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=34.85 E-value=47 Score=27.35 Aligned_cols=37 Identities=22% Similarity=0.117 Sum_probs=26.0
Q ss_pred EEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 019759 11 IAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNI 48 (336)
Q Consensus 11 il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~ 48 (336)
|++.-.++.|.+.- ..+.++|.++|++|.++.++.-.
T Consensus 2 illgvtGsiaa~ka-~~lir~L~~~g~~V~vv~T~~A~ 38 (181)
T TIGR00421 2 IVVAMTGASGVIYG-IRLLEVLKEAGVEVHLVISDWAK 38 (181)
T ss_pred EEEEEECHHHHHHH-HHHHHHHHHCCCEEEEEECccHH
Confidence 44444444444443 78999999999999999886433
No 192
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=34.24 E-value=1.1e+02 Score=26.79 Aligned_cols=39 Identities=18% Similarity=0.354 Sum_probs=27.6
Q ss_pred CCceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCC
Q 019759 6 RQKLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 6 ~~~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~ 45 (336)
+++..|+|++-.+.+.. -+..++..|.++|++|..+.-+
T Consensus 16 ~~~p~vvliHG~~~~~~-~w~~~~~~L~~~g~~vi~~dl~ 54 (273)
T PLN02211 16 RQPPHFVLIHGISGGSW-CWYKIRCLMENSGYKVTCIDLK 54 (273)
T ss_pred CCCCeEEEECCCCCCcC-cHHHHHHHHHhCCCEEEEeccc
Confidence 33457888886555444 4578888999999988876543
No 193
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=34.13 E-value=1.2e+02 Score=24.51 Aligned_cols=48 Identities=10% Similarity=0.031 Sum_probs=33.4
Q ss_pred HHHhhHHHHHhhhhcCCcEEEEcC-CCcc----------h----HHHHHHcCCceEEEeccch
Q 019759 97 HDLLQLPLTNFLQDSRVNWIIHDF-ISHW----------L----PPVAAQLGVNSVFFSIYSA 144 (336)
Q Consensus 97 ~~~~~~~~~~ll~~~~~D~vv~D~-~~~~----------~----~~vA~~~~iP~v~~~~~~~ 144 (336)
...+...+.+++++.+||.++.|- |+.- + ..++.+.++|+.-+.|.-.
T Consensus 46 l~~I~~~l~~~i~~~~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P~~V 108 (164)
T PRK00039 46 LKQIYDGLSELIDEYQPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTPLQV 108 (164)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHh
Confidence 334567888889888999998886 4331 1 2456788899888876543
No 194
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=33.82 E-value=1.1e+02 Score=21.89 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=20.7
Q ss_pred EEEEEeCcccc-CCHHHHHHHHHHHHhC--CCceEEEEe
Q 019759 272 VVYAAFGTEMT-LSQELLHELAYGLEKS--GLPFIWIIK 307 (336)
Q Consensus 272 VVyvSfGS~~~-~~~~~~~~ia~al~~~--~~~~lW~~r 307 (336)
+|++++||... -..+.+.++++.+++. ..++.+.+.
T Consensus 2 lllv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v~~a~~ 40 (101)
T cd03409 2 LLVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPYYVGFQ 40 (101)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHHHHHCCCCCEEEEEE
Confidence 67777777654 4455666666666543 234444444
No 195
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=33.53 E-value=92 Score=26.47 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=33.3
Q ss_pred ceEEEEEcCC-CccchHHHHHHHHHHHhCCCeEEEEeCC
Q 019759 8 KLHIAMFPWL-AYGHIMPFFQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 8 ~~~il~~~~p-~~gH~~p~l~la~~La~rGh~VT~~t~~ 45 (336)
+..|+|++-. ..+...+.....++|.++|++|.++++.
T Consensus 150 ~t~vvIiSDg~~~~~~~~~~~~l~~l~~r~~rviwLnP~ 188 (222)
T PF05762_consen 150 RTTVVIISDGWDTNDPEPLAEELRRLRRRGRRVIWLNPL 188 (222)
T ss_pred CcEEEEEecccccCChHHHHHHHHHHHHhCCEEEEECCc
Confidence 4568888876 6799999999999999999999999986
No 196
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=33.29 E-value=43 Score=29.49 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=17.1
Q ss_pred HHHHHHHHhCCCeEEEEeC
Q 019759 26 FQVAMFLAEKGHHVSYIST 44 (336)
Q Consensus 26 l~la~~La~rGh~VT~~t~ 44 (336)
.++|+.||+|||+|..+.-
T Consensus 20 ~~~A~~lA~~g~~liLvaR 38 (265)
T COG0300 20 AELAKQLARRGYNLILVAR 38 (265)
T ss_pred HHHHHHHHHCCCEEEEEeC
Confidence 6899999999999999874
No 197
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=33.27 E-value=1.5e+02 Score=24.63 Aligned_cols=35 Identities=14% Similarity=0.021 Sum_probs=30.0
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeC
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYIST 44 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~ 44 (336)
-|+|+..++.-|---+..+++.|++.|..|.+++.
T Consensus 110 ivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~ 144 (187)
T cd01452 110 IVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINF 144 (187)
T ss_pred EEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEe
Confidence 38888888888877788999999999999998875
No 198
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.76 E-value=51 Score=30.93 Aligned_cols=39 Identities=18% Similarity=0.398 Sum_probs=30.5
Q ss_pred ceEEEEEcCC-C--ccchHHHHHHHHHHHhCCCeEEEEeCCCC
Q 019759 8 KLHIAMFPWL-A--YGHIMPFFQVAMFLAEKGHHVSYISTPKN 47 (336)
Q Consensus 8 ~~~il~~~~p-~--~gH~~p~l~la~~La~rGh~VT~~t~~~~ 47 (336)
+..+.|=|+. . -||+.|+..| +.|.+.||+|+++.+..+
T Consensus 34 ~~Y~GfDPTa~slHlGhlv~l~kL-~~fQ~aGh~~ivLigd~t 75 (401)
T COG0162 34 RVYIGFDPTAPSLHLGHLVPLMKL-RRFQDAGHKPIVLIGDAT 75 (401)
T ss_pred eEEEeeCCCCCccchhhHHHHHHH-HHHHHCCCeEEEEecccc
Confidence 4567887765 3 3999999887 578899999999987644
No 199
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=31.92 E-value=78 Score=30.87 Aligned_cols=34 Identities=9% Similarity=0.115 Sum_probs=25.4
Q ss_pred HHHhhhhcCCcEEEEcCCCcchHHHHHHcCCceEEEe
Q 019759 104 LTNFLQDSRVNWIIHDFISHWLPPVAAQLGVNSVFFS 140 (336)
Q Consensus 104 ~~~ll~~~~~D~vv~D~~~~~~~~vA~~~~iP~v~~~ 140 (336)
+++.+++.+||+|+.+.+ ...+|+++|+|++.++
T Consensus 366 i~~~I~~~~pdliiGs~~---er~ia~~lgiP~~~is 399 (513)
T CHL00076 366 VGDMIARVEPSAIFGTQM---ERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHhcCCCEEEECch---hhHHHHHhCCCEEEee
Confidence 445556668999999884 4556899999997765
No 200
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=31.30 E-value=1.1e+02 Score=21.12 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=31.9
Q ss_pred cccccccCCCCeEEEEEeCccccCCHHHHHHHHHHHHhCCCceE
Q 019759 260 LKDWLDSKENNSVVYAAFGTEMTLSQELLHELAYGLEKSGLPFI 303 (336)
Q Consensus 260 l~~wLd~~~~~~VVyvSfGS~~~~~~~~~~~ia~al~~~~~~~l 303 (336)
+..|.-+++.+++|.|+-|-.-. .....++|+.|.+.|+.|.
T Consensus 6 ~~~w~p~~~~k~~v~i~HG~~eh--~~ry~~~a~~L~~~G~~V~ 47 (79)
T PF12146_consen 6 YRRWKPENPPKAVVVIVHGFGEH--SGRYAHLAEFLAEQGYAVF 47 (79)
T ss_pred EEEecCCCCCCEEEEEeCCcHHH--HHHHHHHHHHHHhCCCEEE
Confidence 34576665568999999887542 4578899999999998864
No 201
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=30.64 E-value=1e+02 Score=25.45 Aligned_cols=43 Identities=12% Similarity=0.203 Sum_probs=29.1
Q ss_pred HHHHHhhhhcCC--cEEEEcCCCcc-hHHHHHHcCCceEEEeccch
Q 019759 102 LPLTNFLQDSRV--NWIIHDFISHW-LPPVAAQLGVNSVFFSIYSA 144 (336)
Q Consensus 102 ~~~~~ll~~~~~--D~vv~D~~~~~-~~~vA~~~~iP~v~~~~~~~ 144 (336)
..+++++++... .++|--.+..+ +..+|+++++|.|.+.|+..
T Consensus 47 ~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav~ 92 (187)
T PF05728_consen 47 AQLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPAVR 92 (187)
T ss_pred HHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 344556665443 35555566544 66899999999999988643
No 202
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=30.47 E-value=1.2e+02 Score=26.56 Aligned_cols=42 Identities=21% Similarity=0.083 Sum_probs=33.4
Q ss_pred CCceEEEEEcC-CCccchHHHHHHHHHHHhCCCeEEEEeCCCC
Q 019759 6 RQKLHIAMFPW-LAYGHIMPFFQVAMFLAEKGHHVSYISTPKN 47 (336)
Q Consensus 6 ~~~~~il~~~~-p~~gH~~p~l~la~~La~rGh~VT~~t~~~~ 47 (336)
..+++-.|+-. +|-|-...--.||-.|+.-++.|-+++++..
T Consensus 16 q~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPA 58 (323)
T KOG2825|consen 16 QTSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPA 58 (323)
T ss_pred cceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcc
Confidence 34566556653 6668999999999999999999999998643
No 203
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=30.37 E-value=72 Score=26.13 Aligned_cols=28 Identities=11% Similarity=0.297 Sum_probs=23.0
Q ss_pred cchHH-HHHHHHHHHh-CCCeEEEEeCCCC
Q 019759 20 GHIMP-FFQVAMFLAE-KGHHVSYISTPKN 47 (336)
Q Consensus 20 gH~~p-~l~la~~La~-rGh~VT~~t~~~~ 47 (336)
||... ..++.++|++ +||+|.++.++.-
T Consensus 10 g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A 39 (174)
T TIGR02699 10 GDKLPETYSIMKDVKNRYGDEIDVFLSKAG 39 (174)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEECHhH
Confidence 78877 8899999985 5999999987643
No 204
>PRK05920 aromatic acid decarboxylase; Validated
Probab=30.20 E-value=80 Score=26.59 Aligned_cols=37 Identities=11% Similarity=-0.065 Sum_probs=28.1
Q ss_pred eEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCC
Q 019759 9 LHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPK 46 (336)
Q Consensus 9 ~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~ 46 (336)
.+|++.-.++ +...=...+.++|.+.||+|+++.+..
T Consensus 4 krIllgITGs-iaa~ka~~lvr~L~~~g~~V~vi~T~~ 40 (204)
T PRK05920 4 KRIVLAITGA-SGAIYGVRLLECLLAADYEVHLVISKA 40 (204)
T ss_pred CEEEEEEeCH-HHHHHHHHHHHHHHHCCCEEEEEEChh
Confidence 3566655444 455678899999999999999998764
No 205
>PRK06835 DNA replication protein DnaC; Validated
Probab=30.15 E-value=74 Score=29.03 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=31.5
Q ss_pred eEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCC
Q 019759 9 LHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPK 46 (336)
Q Consensus 9 ~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~ 46 (336)
..++|+-.+|.|=..-..++|++|.++|+.|.|++...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~ 221 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADE 221 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHH
Confidence 45888888888777778899999999999999988643
No 206
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=29.49 E-value=1.1e+02 Score=25.42 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=28.6
Q ss_pred eE-EEEEc-CCCccchHHHHHHHHHHHhCCCeEEEEeCC
Q 019759 9 LH-IAMFP-WLAYGHIMPFFQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 9 ~~-il~~~-~p~~gH~~p~l~la~~La~rGh~VT~~t~~ 45 (336)
.+ |+++. -++.|=..-...||..|+++|++|.++=.+
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 44 44443 466688888999999999999999988554
No 207
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=29.47 E-value=82 Score=26.89 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=26.1
Q ss_pred hhcCCcEEEEcCCCcchH---HHHHHcCCceEEEecc
Q 019759 109 QDSRVNWIIHDFISHWLP---PVAAQLGVNSVFFSIY 142 (336)
Q Consensus 109 ~~~~~D~vv~D~~~~~~~---~vA~~~~iP~v~~~~~ 142 (336)
++.+.|+||.|++.+... .+++..|+|++.-.+.
T Consensus 175 ~~~gadlIvLDCmGYt~~~r~~~~~~~g~PVlLsr~l 211 (221)
T PF07302_consen 175 AEQGADLIVLDCMGYTQEMRDIVQRALGKPVLLSRTL 211 (221)
T ss_pred HhcCCCEEEEECCCCCHHHHHHHHHHhCCCEEeHHHH
Confidence 445799999999876642 5788999999875443
No 208
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=29.40 E-value=1.3e+02 Score=23.96 Aligned_cols=36 Identities=28% Similarity=0.247 Sum_probs=30.1
Q ss_pred ceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCC
Q 019759 8 KLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPK 46 (336)
Q Consensus 8 ~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~ 46 (336)
..+|+++- -+|-+....++..|+.-|.++++++++.
T Consensus 2 gl~i~~vG---D~~~rv~~Sl~~~~~~~g~~~~~~~P~~ 37 (158)
T PF00185_consen 2 GLKIAYVG---DGHNRVAHSLIELLAKFGMEVVLIAPEG 37 (158)
T ss_dssp TEEEEEES---STTSHHHHHHHHHHHHTTSEEEEESSGG
T ss_pred CCEEEEEC---CCCChHHHHHHHHHHHcCCEEEEECCCc
Confidence 35677765 3899999999999999999999998764
No 209
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=29.17 E-value=88 Score=30.50 Aligned_cols=36 Identities=8% Similarity=0.081 Sum_probs=25.8
Q ss_pred HHHHhhhhcCCcEEEEcCCCcchHHHHHHcCCceEEEec
Q 019759 103 PLTNFLQDSRVNWIIHDFISHWLPPVAAQLGVNSVFFSI 141 (336)
Q Consensus 103 ~~~~ll~~~~~D~vv~D~~~~~~~~vA~~~~iP~v~~~~ 141 (336)
.+++.+++.+||+||.+.+ ...+|+++|+|++.++.
T Consensus 355 ei~~~i~~~~pdliiG~~~---er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 355 EVADAIAALEPELVLGTQM---ERHSAKRLDIPCGVISA 390 (511)
T ss_pred HHHHHHHhcCCCEEEEChH---HHHHHHHcCCCEEEecC
Confidence 3444555667899998873 56678999999876643
No 210
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=28.91 E-value=1.5e+02 Score=22.23 Aligned_cols=31 Identities=23% Similarity=0.100 Sum_probs=23.2
Q ss_pred EEcCCCccchHHHHHHHHHHHhCCCeEEEEe
Q 019759 13 MFPWLAYGHIMPFFQVAMFLAEKGHHVSYIS 43 (336)
Q Consensus 13 ~~~~p~~gH~~p~l~la~~La~rGh~VT~~t 43 (336)
++..+..+.-.-+..+++.|+++|+.|..+.
T Consensus 3 v~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~ 33 (145)
T PF12695_consen 3 VLLHGWGGSRRDYQPLAEALAEQGYAVVAFD 33 (145)
T ss_dssp EEECTTTTTTHHHHHHHHHHHHTTEEEEEES
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3333445567779999999999999888763
No 211
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=28.90 E-value=1.3e+02 Score=22.52 Aligned_cols=37 Identities=30% Similarity=0.220 Sum_probs=31.9
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCC
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPK 46 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~ 46 (336)
||++..-++.|=......+++.|+++|.+|.++..+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4777788888999999999999999999999887754
No 212
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=28.82 E-value=1e+02 Score=22.16 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=21.6
Q ss_pred eEEEEEeCccccCCHHHHHHHHHHHHhC--CCceEEE
Q 019759 271 SVVYAAFGTEMTLSQELLHELAYGLEKS--GLPFIWI 305 (336)
Q Consensus 271 ~VVyvSfGS~~~~~~~~~~~ia~al~~~--~~~~lW~ 305 (336)
++|+++.||...-..+.+.++++.+++. ..++-+.
T Consensus 1 ~ivlv~hGS~~~~~~~~~~~l~~~l~~~~~~~~v~~a 37 (101)
T cd03416 1 ALLLVGHGSRDPRAAEALEALAERLRERLPGDEVELA 37 (101)
T ss_pred CEEEEEcCCCCHHHHHHHHHHHHHHHhhCCCCcEEEE
Confidence 3678888887654445677777777654 2344444
No 213
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=28.74 E-value=87 Score=29.14 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=25.8
Q ss_pred EEEEEc-CCCccchHHHHHHHHHHHhCCC---eEEEE
Q 019759 10 HIAMFP-WLAYGHIMPFFQVAMFLAEKGH---HVSYI 42 (336)
Q Consensus 10 ~il~~~-~p~~gH~~p~l~la~~La~rGh---~VT~~ 42 (336)
+|+|++ .-|.||...-.+|.++|.++|. +|.++
T Consensus 7 ~vlil~~~~G~GH~~aA~al~~~~~~~~~~~~~~~~~ 43 (391)
T PRK13608 7 KILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEH 43 (391)
T ss_pred eEEEEECCCCchHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 677766 5677999999999999998864 45544
No 214
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=28.71 E-value=94 Score=30.37 Aligned_cols=35 Identities=11% Similarity=0.228 Sum_probs=24.9
Q ss_pred HHHHhhhhcCCcEEEEcCCCcchHHHHHHcCCceEEEe
Q 019759 103 PLTNFLQDSRVNWIIHDFISHWLPPVAAQLGVNSVFFS 140 (336)
Q Consensus 103 ~~~~ll~~~~~D~vv~D~~~~~~~~vA~~~~iP~v~~~ 140 (336)
.+++.+++.+||+||.+.. ...+|+++|+|++.++
T Consensus 353 el~~~i~~~~PdliiG~~~---er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 353 EVEDAIAEAAPELVLGTQM---ERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHhcCCCEEEEcch---HHHHHHHcCCCEEEec
Confidence 3444555567888887763 4568889999987664
No 215
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=28.68 E-value=1.6e+02 Score=25.91 Aligned_cols=38 Identities=16% Similarity=0.088 Sum_probs=33.3
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCC
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKN 47 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~ 47 (336)
.|+++..+|-|=..-...||..|+++|++|.+++.+.+
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 47777788889999999999999999999999988643
No 216
>PRK04940 hypothetical protein; Provisional
Probab=28.36 E-value=1.4e+02 Score=24.57 Aligned_cols=33 Identities=15% Similarity=0.154 Sum_probs=25.1
Q ss_pred CCcEEEEcCC-CcchHHHHHHcCCceEEEeccch
Q 019759 112 RVNWIIHDFI-SHWLPPVAAQLGVNSVFFSIYSA 144 (336)
Q Consensus 112 ~~D~vv~D~~-~~~~~~vA~~~~iP~v~~~~~~~ 144 (336)
+++++|--.+ ..||.-+|.++|+|.|.++|+.-
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv~ 93 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNLF 93 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCCC
Confidence 3566666665 45577999999999999998643
No 217
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=28.23 E-value=6.6e+02 Score=25.68 Aligned_cols=39 Identities=15% Similarity=0.028 Sum_probs=26.9
Q ss_pred hHHHHHhhhhcCCcEEEEcCCCcc--hHHHHHHcCCceEEE
Q 019759 101 QLPLTNFLQDSRVNWIIHDFISHW--LPPVAAQLGVNSVFF 139 (336)
Q Consensus 101 ~~~~~~ll~~~~~D~vv~D~~~~~--~~~vA~~~~iP~v~~ 139 (336)
...+.+++++.+||+|.+-..... +..+++..++|.|..
T Consensus 389 ~~~L~~~lk~~kpDIVH~h~~~a~~lg~lAa~~~gvPvIv~ 429 (694)
T PRK15179 389 TTKLTDVMRSSVPSVVHIWQDGSIFACALAALLAGVPRIVL 429 (694)
T ss_pred HHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHHcCCCEEEE
Confidence 345677788889999998654442 345566778998753
No 218
>PLN00016 RNA-binding protein; Provisional
Probab=28.11 E-value=82 Score=29.10 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=23.9
Q ss_pred eEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCC
Q 019759 9 LHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 9 ~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~ 45 (336)
.+|+++..-+-|+=.-=..|++.|+++||+|+.++-.
T Consensus 53 ~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 53 KKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred ceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecC
Confidence 4577762222222223357889999999999998753
No 219
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=27.97 E-value=1e+02 Score=24.95 Aligned_cols=38 Identities=13% Similarity=0.103 Sum_probs=25.3
Q ss_pred HHHHHhhhhcCCcEEEEcCCCcc--hHHHHHHcCCceEEEe
Q 019759 102 LPLTNFLQDSRVNWIIHDFISHW--LPPVAAQLGVNSVFFS 140 (336)
Q Consensus 102 ~~~~~ll~~~~~D~vv~D~~~~~--~~~vA~~~~iP~v~~~ 140 (336)
..+++++. .+||+||....... ....-++.|||++.+.
T Consensus 60 ~n~E~ll~-l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 60 LNVELIVA-LKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCHHHHhc-cCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 34555554 58999998654332 3455678999988874
No 220
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=27.56 E-value=1e+02 Score=29.20 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=25.4
Q ss_pred HHHhhhhcCCcEEEEcCCCcchHHHHHHcCCceEEEe
Q 019759 104 LTNFLQDSRVNWIIHDFISHWLPPVAAQLGVNSVFFS 140 (336)
Q Consensus 104 ~~~ll~~~~~D~vv~D~~~~~~~~vA~~~~iP~v~~~ 140 (336)
+++.+++.+||++|.+... ..+|+++++|.+.+.
T Consensus 363 l~~~i~~~~pdliig~~~~---~~~a~~~~ip~i~~~ 396 (428)
T cd01965 363 LESLAKEEPVDLLIGNSHG---RYLARDLGIPLVRVG 396 (428)
T ss_pred HHHHhhccCCCEEEECchh---HHHHHhcCCCEEEec
Confidence 3444555679999999853 688999999997653
No 221
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=27.45 E-value=75 Score=27.04 Aligned_cols=34 Identities=15% Similarity=0.041 Sum_probs=28.9
Q ss_pred EEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeC
Q 019759 11 IAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYIST 44 (336)
Q Consensus 11 il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~ 44 (336)
|++.-+|+.|-..--.+||++|.+++|+|..++.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 4555589999999999999999999999876653
No 222
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=27.29 E-value=67 Score=24.37 Aligned_cols=28 Identities=7% Similarity=0.133 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 019759 23 MPFFQVAMFLAEKGHHVSYISTPKNIDR 50 (336)
Q Consensus 23 ~p~l~la~~La~rGh~VT~~t~~~~~~~ 50 (336)
-++.++.-.+.-|||++|++-|......
T Consensus 10 k~L~eIll~FilrGHKT~vyLP~yY~~~ 37 (122)
T PF14626_consen 10 KALVEILLHFILRGHKTVVYLPKYYKNY 37 (122)
T ss_pred HHHHHHHHHHHhccCeeEEEChHHHhcc
Confidence 4677777788889999999988655543
No 223
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=27.19 E-value=1.5e+02 Score=23.20 Aligned_cols=31 Identities=16% Similarity=-0.049 Sum_probs=26.2
Q ss_pred cCCCccchHHHHHHHHHHHhCCCeEEEEeCC
Q 019759 15 PWLAYGHIMPFFQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 15 ~~p~~gH~~p~l~la~~La~rGh~VT~~t~~ 45 (336)
.+...--+.|..-++...+.+|++|+++-+.
T Consensus 10 ~SG~~dk~~~a~iias~A~A~G~EV~VF~Tf 40 (137)
T COG2210 10 ASGTLDKAYAALIIASGAAAMGYEVTVFFTF 40 (137)
T ss_pred eCCCHHHHHHHHHHHHHHHHcCCeEEEEEeH
Confidence 3455678899999999999999999999764
No 224
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=27.05 E-value=85 Score=29.69 Aligned_cols=34 Identities=15% Similarity=0.145 Sum_probs=24.1
Q ss_pred HHHHhhhhcCCcEEEEcCCCcchHHHHHHcCCceEEE
Q 019759 103 PLTNFLQDSRVNWIIHDFISHWLPPVAAQLGVNSVFF 139 (336)
Q Consensus 103 ~~~~ll~~~~~D~vv~D~~~~~~~~vA~~~~iP~v~~ 139 (336)
.+++++++.+||++|.... ...+|+++|||.+.+
T Consensus 360 e~~~~i~~~~pDliig~~~---~~~~a~k~giP~~~~ 393 (421)
T cd01976 360 ELEEFVKRLKPDLIGSGIK---EKYVFQKMGIPFRQM 393 (421)
T ss_pred HHHHHHHHhCCCEEEecCc---chhhhhhcCCCeEeC
Confidence 3445556668888888775 566788888888544
No 225
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.01 E-value=71 Score=24.22 Aligned_cols=19 Identities=42% Similarity=0.446 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhCCCeEEEE
Q 019759 24 PFFQVAMFLAEKGHHVSYI 42 (336)
Q Consensus 24 p~l~la~~La~rGh~VT~~ 42 (336)
-++.+|++|++||.+|+..
T Consensus 24 ~~~~VA~~L~e~g~dv~at 42 (129)
T COG1255 24 FFLDVAKRLAERGFDVLAT 42 (129)
T ss_pred hHHHHHHHHHHcCCcEEEE
Confidence 3689999999999988865
No 226
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=26.97 E-value=1.3e+02 Score=25.00 Aligned_cols=34 Identities=21% Similarity=0.100 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEE
Q 019759 8 KLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYI 42 (336)
Q Consensus 8 ~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~ 42 (336)
+.-|++++ -..|....+..+|..|+++|+.|.+.
T Consensus 14 ~~~Vvv~~-d~~G~~~~~~~~ad~lA~~Gy~v~~p 47 (218)
T PF01738_consen 14 RPAVVVIH-DIFGLNPNIRDLADRLAEEGYVVLAP 47 (218)
T ss_dssp EEEEEEE--BTTBS-HHHHHHHHHHHHTT-EEEEE
T ss_pred CCEEEEEc-CCCCCchHHHHHHHHHHhcCCCEEec
Confidence 33455555 56687788999999999999766553
No 227
>cd00483 HPPK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is HPPK which catalyzes pyrophosphoryl transfer from ATP to 6-hydroxymethyl-7,8-dihydropterin (HP). The functional enzyme is a monomer. Mammals lack many of the enzymes in the folate pathway including, HPPK.
Probab=26.85 E-value=70 Score=24.61 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=18.8
Q ss_pred EEEEeCccccCCHHHHHHHHHHHHhCC
Q 019759 273 VYAAFGTEMTLSQELLHELAYGLEKSG 299 (336)
Q Consensus 273 VyvSfGS~~~~~~~~~~~ia~al~~~~ 299 (336)
+|+|+||+..-+.+.++.-...|++..
T Consensus 1 ~~i~LGSN~~~~~~~l~~A~~~L~~~~ 27 (128)
T cd00483 1 VYLALGSNLGDRLANLRAALRALAALP 27 (128)
T ss_pred CEEEEeCCcHhHHHHHHHHHHHHHcCC
Confidence 589999998655566666666666543
No 228
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=26.78 E-value=1.2e+02 Score=25.87 Aligned_cols=36 Identities=6% Similarity=0.048 Sum_probs=24.1
Q ss_pred HhhhhcCCcEEEEcCCCcc--hHHHHHHcC------CceEEEecc
Q 019759 106 NFLQDSRVNWIIHDFISHW--LPPVAAQLG------VNSVFFSIY 142 (336)
Q Consensus 106 ~ll~~~~~D~vv~D~~~~~--~~~vA~~~~------iP~v~~~~~ 142 (336)
+.++.. ||+||.|..++. +..+++++. .|+++++..
T Consensus 38 ~~~~~~-~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~Lta~ 81 (229)
T COG0745 38 EAAREQ-PDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIVLTAR 81 (229)
T ss_pred HHHhcC-CCEEEEECCCCCCCHHHHHHHHHhhcCCCCcEEEEECC
Confidence 344445 999999999886 556655443 566666554
No 229
>PLN02949 transferase, transferring glycosyl groups
Probab=26.75 E-value=5.8e+02 Score=24.50 Aligned_cols=126 Identities=12% Similarity=0.148 Sum_probs=64.5
Q ss_pred CceEEEEEc-CC--CccchHHHHHHHHHHHhCCC--eEEEEeCCCCCCCCCC----CCCC----CCCCeEEEecCCCCCC
Q 019759 7 QKLHIAMFP-WL--AYGHIMPFFQVAMFLAEKGH--HVSYISTPKNIDRLPQ----IPTN----LSSRLSYIQLPLPQLD 73 (336)
Q Consensus 7 ~~~~il~~~-~p--~~gH~~p~l~la~~La~rGh--~VT~~t~~~~~~~~~~----~~~~----~~~~i~~~~~~~~~~~ 73 (336)
++.+|+|+. +. |.|==-.+...+++|.++|| +|+++|++-.... .. ..+. ....+.|+.+.. -+
T Consensus 32 ~~~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~-~~~l~~~~~~~~i~~~~~~~~v~l~~--~~ 108 (463)
T PLN02949 32 RKRAVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASP-DSLAARARDRFGVELLSPPKVVHLRK--RK 108 (463)
T ss_pred CCcEEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCH-HHHHHHHHhhcceecCCCceEEEecc--cc
Confidence 445676665 33 23555778899999999998 7888886522111 11 1000 111223332210 00
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHhhHHHHHhhhhcCCcEEEEcCCC-cchHHHHHHcCCceEEEeccch
Q 019759 74 GLPEGAESTAELPIHKVPYLKKAHDLLQLPLTNFLQDSRVNWIIHDFIS-HWLPPVAAQLGVNSVFFSIYSA 144 (336)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~vv~D~~~-~~~~~vA~~~~iP~v~~~~~~~ 144 (336)
-++.. .+..+..+.+....+.-.++.+.+ . .+.|++|... +.++.+++-.++|++.+.-.+.
T Consensus 109 ~~~~~-------~~~~~t~~~~~~~~~~l~~~~~~~-~-~p~v~vDt~~~~~~~pl~~~~~~~v~~yvH~p~ 171 (463)
T PLN02949 109 WIEEE-------TYPRFTMIGQSLGSVYLAWEALCK-F-TPLYFFDTSGYAFTYPLARLFGCKVVCYTHYPT 171 (463)
T ss_pred ccccc-------cCCceehHHHHHHHHHHHHHHHHh-c-CCCEEEeCCCcccHHHHHHhcCCcEEEEEeCCc
Confidence 01100 011122333333333334444433 2 4468888865 4577888866999998876553
No 230
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=26.70 E-value=1.2e+02 Score=22.49 Aligned_cols=34 Identities=18% Similarity=0.004 Sum_probs=29.2
Q ss_pred EEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeC
Q 019759 11 IAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYIST 44 (336)
Q Consensus 11 il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~ 44 (336)
++....++..|-....-++..|.++|++|.++..
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~ 35 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGV 35 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCC
Confidence 4666678889999999999999999999998854
No 231
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=26.69 E-value=79 Score=26.89 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=21.8
Q ss_pred EEEEcCCCccchHHHHHHHHHHHhCCCeEEEE
Q 019759 11 IAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYI 42 (336)
Q Consensus 11 il~~~~p~~gH~~p~l~la~~La~rGh~VT~~ 42 (336)
=+++|..|.||= +..||++||+|+=+
T Consensus 40 rvLvPgCG~g~D------~~~La~~G~~VvGv 65 (218)
T PF05724_consen 40 RVLVPGCGKGYD------MLWLAEQGHDVVGV 65 (218)
T ss_dssp EEEETTTTTSCH------HHHHHHTTEEEEEE
T ss_pred eEEEeCCCChHH------HHHHHHCCCeEEEE
Confidence 477799999986 67788999999876
No 232
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=26.55 E-value=1.5e+02 Score=21.51 Aligned_cols=35 Identities=11% Similarity=0.233 Sum_probs=26.3
Q ss_pred HHHHhhhhcCCcEEEEcCCCcchH--HHHHHcCCceE
Q 019759 103 PLTNFLQDSRVNWIIHDFISHWLP--PVAAQLGVNSV 137 (336)
Q Consensus 103 ~~~~ll~~~~~D~vv~D~~~~~~~--~vA~~~~iP~v 137 (336)
.+.++++...+|+||.|.-.++.. .+.+.++++++
T Consensus 48 ei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~~~V~ 84 (95)
T PF13167_consen 48 EIKELIEELDADLVVFDNELSPSQQRNLEKALGVKVI 84 (95)
T ss_pred HHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHCCeee
Confidence 455555566899999999777754 78888888865
No 233
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=26.54 E-value=63 Score=27.62 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=15.8
Q ss_pred HHHHHHHHhCCCeEEEEe
Q 019759 26 FQVAMFLAEKGHHVSYIS 43 (336)
Q Consensus 26 l~la~~La~rGh~VT~~t 43 (336)
.++|++|+++|++|+++.
T Consensus 29 ~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 29 KIITETFLSAGHEVTLVT 46 (227)
T ss_pred HHHHHHHHHCCCEEEEEc
Confidence 578999999999999875
No 234
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=26.40 E-value=62 Score=30.16 Aligned_cols=38 Identities=21% Similarity=0.420 Sum_probs=28.0
Q ss_pred eEEEEEcCC-C--ccchHHHHHHHHHHHhCCCeEEEEeCCCC
Q 019759 9 LHIAMFPWL-A--YGHIMPFFQVAMFLAEKGHHVSYISTPKN 47 (336)
Q Consensus 9 ~~il~~~~p-~--~gH~~p~l~la~~La~rGh~VT~~t~~~~ 47 (336)
.-+.+=|+. . -||+.|++.+ +.|.+.||+++++.+..+
T Consensus 33 vy~G~dPTg~~lHlGh~v~l~~l-~~lq~~G~~~~iligd~t 73 (377)
T TIGR00234 33 LYVGFDPTAPSLHLGHLVPLLKL-RDFQQAGHEVIVLLGDAT 73 (377)
T ss_pred EEEeeCCCCCCccHHHHHHHHHH-HHHHHCCCcEEEEEeccc
Confidence 345666665 2 2999997665 688899999999987543
No 235
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=26.04 E-value=1.5e+02 Score=22.47 Aligned_cols=36 Identities=8% Similarity=0.119 Sum_probs=22.4
Q ss_pred CeEEEEEeCccccCCHHHHHHHHHHHHhC--CCceEEE
Q 019759 270 NSVVYAAFGTEMTLSQELLHELAYGLEKS--GLPFIWI 305 (336)
Q Consensus 270 ~~VVyvSfGS~~~~~~~~~~~ia~al~~~--~~~~lW~ 305 (336)
.++|+++.||...-..+.+.+++..+++. ..+|-|.
T Consensus 2 ~~lvlv~hGS~~~~~~~~~~~~~~~l~~~~~~~~v~~a 39 (126)
T PRK00923 2 LGLLLVGHGSRLPYNKEVVTKIAEKIKEKHPFYIVEVG 39 (126)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 45788888886544446677777777653 2244454
No 236
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=25.94 E-value=72 Score=25.61 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=17.4
Q ss_pred HHHHHHHHhCCCeEEEEeCC
Q 019759 26 FQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 26 l~la~~La~rGh~VT~~t~~ 45 (336)
..++++|.++||+|+.++-.
T Consensus 12 ~~l~~~L~~~~~~V~~~~R~ 31 (183)
T PF13460_consen 12 RALAKQLLRRGHEVTALVRS 31 (183)
T ss_dssp HHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHCCCEEEEEecC
Confidence 46899999999999999854
No 237
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.77 E-value=1.3e+02 Score=28.50 Aligned_cols=37 Identities=16% Similarity=0.036 Sum_probs=27.8
Q ss_pred CCceEEEEEcCCCc--cchHHHHHHHHHHHhCCCeEEEEeCC
Q 019759 6 RQKLHIAMFPWLAY--GHIMPFFQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 6 ~~~~~il~~~~p~~--gH~~p~l~la~~La~rGh~VT~~t~~ 45 (336)
+..++|++++.|+- |.-+. .||+|+..||.++++-+.
T Consensus 264 ~~~P~V~Ilcgpgnnggdg~v---~gRHL~~~G~~~vi~~pk 302 (453)
T KOG2585|consen 264 HQWPLVAILCGPGNNGGDGLV---CGRHLAQHGYTPVIYYPK 302 (453)
T ss_pred CCCceEEEEeCCCCccchhHH---HHHHHHHcCceeEEEeec
Confidence 34567999988775 33333 999999999999988753
No 238
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=25.68 E-value=1.3e+02 Score=26.05 Aligned_cols=42 Identities=21% Similarity=0.168 Sum_probs=36.4
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCC
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRL 51 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~ 51 (336)
-+++.-.|+.|...-..+++.+.+++|..|.++|++.....+
T Consensus 25 ~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l 66 (260)
T COG0467 25 VVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEEL 66 (260)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHH
Confidence 467777999999999999999999999999999987655433
No 239
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=25.62 E-value=96 Score=27.86 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=25.8
Q ss_pred ceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCC
Q 019759 8 KLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 8 ~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~ 45 (336)
+.+|+++-.++.| ..+|..|++.||+||++.-.
T Consensus 5 ~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 5 TPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeC
Confidence 3578888766655 45788899999999999864
No 240
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=25.59 E-value=1.7e+02 Score=19.96 Aligned_cols=33 Identities=24% Similarity=0.187 Sum_probs=26.7
Q ss_pred EEEEcCCCccchHHHHHHHHHHHhCCCeEEEEe
Q 019759 11 IAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYIS 43 (336)
Q Consensus 11 il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t 43 (336)
+++...++.|=..-...+++.|+++|++|.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 345555677888889999999999999998875
No 241
>PF11609 DUF3248: Protein of unknown function (DUF3248); InterPro: IPR021650 This family of proteins is thought to be the product of the gene TT1592 from Thermus thermophilus however this cannot be confirmed. Currently there is no known function. ; PDB: 2E6X_A.
Probab=25.54 E-value=78 Score=20.66 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=11.2
Q ss_pred HHhCCCceEEEEeCCC
Q 019759 295 LEKSGLPFIWIIKNRP 310 (336)
Q Consensus 295 l~~~~~~~lW~~r~~~ 310 (336)
|+++|+..+|.+.+++
T Consensus 1 L~~Lg~~LvWRiGk~e 16 (63)
T PF11609_consen 1 LEALGQHLVWRIGKAE 16 (63)
T ss_dssp HHHTT--EEEEEEE-T
T ss_pred ChhhcceeEEEecccc
Confidence 5778999999999875
No 242
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=25.54 E-value=1.2e+02 Score=28.73 Aligned_cols=33 Identities=12% Similarity=0.320 Sum_probs=22.2
Q ss_pred HHHhhhhcCCcEEEEcCCCcchHHHHHHcCCceEEE
Q 019759 104 LTNFLQDSRVNWIIHDFISHWLPPVAAQLGVNSVFF 139 (336)
Q Consensus 104 ~~~ll~~~~~D~vv~D~~~~~~~~vA~~~~iP~v~~ 139 (336)
+++++++.++|++|.+.. ...+|+++++|.+.+
T Consensus 364 ~~~~l~~~~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 364 IESYAKELKIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHHhcCCCEEEECch---hHHHHHHcCCCEEEe
Confidence 344445556788887774 457788888887654
No 243
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=25.49 E-value=78 Score=25.60 Aligned_cols=38 Identities=13% Similarity=-0.006 Sum_probs=25.0
Q ss_pred CCceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeC
Q 019759 6 RQKLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYIST 44 (336)
Q Consensus 6 ~~~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~ 44 (336)
.+..+|+++.-++. .=-=-+.+||.|+++|++|+++..
T Consensus 23 ~~~~~v~il~G~Gn-NGgDgl~~AR~L~~~G~~V~v~~~ 60 (169)
T PF03853_consen 23 PKGPRVLILCGPGN-NGGDGLVAARHLANRGYNVTVYLV 60 (169)
T ss_dssp CTT-EEEEEE-SSH-HHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cCCCeEEEEECCCC-ChHHHHHHHHHHHHCCCeEEEEEE
Confidence 34557788776652 111257889999999999999543
No 244
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=25.38 E-value=1.6e+02 Score=24.62 Aligned_cols=36 Identities=8% Similarity=-0.022 Sum_probs=21.4
Q ss_pred hhhhcCCcEEEEc----CCCcchHHHHHHc-----CCceEEEecc
Q 019759 107 FLQDSRVNWIIHD----FISHWLPPVAAQL-----GVNSVFFSIY 142 (336)
Q Consensus 107 ll~~~~~D~vv~D----~~~~~~~~vA~~~-----~iP~v~~~~~ 142 (336)
.+...+|||||.| .-.+.+.++.+++ ++++++++..
T Consensus 42 ~~~~~~pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~~iivlt~~ 86 (207)
T PRK15411 42 ACDSLRPSVVFINEDCFIHDASNSQRIKQIINQHPNTLFIVFMAI 86 (207)
T ss_pred HHhccCCCEEEEeCcccCCCCChHHHHHHHHHHCCCCeEEEEECC
Confidence 4455579999999 3333445555433 3566766543
No 245
>PRK04155 chaperone protein HchA; Provisional
Probab=25.37 E-value=2e+02 Score=25.69 Aligned_cols=21 Identities=10% Similarity=0.091 Sum_probs=17.5
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 019759 25 FFQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 25 ~l~la~~La~rGh~VT~~t~~ 45 (336)
++.-...|.+.|++|+++|+.
T Consensus 79 ~~~P~~~L~~AG~eVdiAS~~ 99 (287)
T PRK04155 79 TLLPMYHLHKAGFEFDVATLS 99 (287)
T ss_pred HHHHHHHHHHCCCEEEEEecC
Confidence 566678888999999999974
No 246
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=25.35 E-value=1e+02 Score=28.26 Aligned_cols=39 Identities=15% Similarity=0.206 Sum_probs=24.5
Q ss_pred HHHHHhhhhcCCcEEEEcCCCcchHHH--HHHcCCceEEEe
Q 019759 102 LPLTNFLQDSRVNWIIHDFISHWLPPV--AAQLGVNSVFFS 140 (336)
Q Consensus 102 ~~~~~ll~~~~~D~vv~D~~~~~~~~v--A~~~~iP~v~~~ 140 (336)
..+.+++++.+||+||++.-......+ +...++|.+.+.
T Consensus 94 ~~l~~~l~~~~pD~Vi~~~~~~~~~~~~~~~~~~ip~~~~~ 134 (380)
T PRK13609 94 KRLKLLLQAEKPDIVINTFPIIAVPELKKQTGISIPTYNVL 134 (380)
T ss_pred HHHHHHHHHhCcCEEEEcChHHHHHHHHHhcCCCCCeEEEe
Confidence 456677888899999997533222222 334568877543
No 247
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=25.30 E-value=1.4e+02 Score=26.11 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=28.1
Q ss_pred HHHHHhhhhcCCcEEEEcCCCcch-------HHHHHHcCCceEEEe
Q 019759 102 LPLTNFLQDSRVNWIIHDFISHWL-------PPVAAQLGVNSVFFS 140 (336)
Q Consensus 102 ~~~~~ll~~~~~D~vv~D~~~~~~-------~~vA~~~~iP~v~~~ 140 (336)
+.+.+++++.++|+| +|.--+++ ..+|+..|+|++.|-
T Consensus 56 e~l~~~l~e~~i~ll-IDATHPyAa~iS~Na~~aake~gipy~r~e 100 (257)
T COG2099 56 EGLAAFLREEGIDLL-IDATHPYAARISQNAARAAKETGIPYLRLE 100 (257)
T ss_pred HHHHHHHHHcCCCEE-EECCChHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 467778888888865 46666664 467889999998875
No 248
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=25.26 E-value=96 Score=25.42 Aligned_cols=36 Identities=14% Similarity=-0.009 Sum_probs=26.7
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCC
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPK 46 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~ 46 (336)
+|++.-.++ +...-...+.++|.++|++|.++.++.
T Consensus 2 ~I~lgvtGs-~~a~~~~~ll~~L~~~g~~V~vi~T~~ 37 (177)
T TIGR02113 2 KILLAVTGS-IAAYKAADLTSQLTKLGYDVTVLMTQA 37 (177)
T ss_pred EEEEEEcCH-HHHHHHHHHHHHHHHCCCEEEEEEChH
Confidence 455555444 455566799999999999999998754
No 249
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=25.24 E-value=1.1e+02 Score=27.83 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=35.7
Q ss_pred eEEEEEcCCCccchHHHHHHHHHHHhC--CCeEEEEeCCCCCC
Q 019759 9 LHIAMFPWLAYGHIMPFFQVAMFLAEK--GHHVSYISTPKNID 49 (336)
Q Consensus 9 ~~il~~~~p~~gH~~p~l~la~~La~r--Gh~VT~~t~~~~~~ 49 (336)
.+|+++-..+-|.+.-...+.+.|.++ +.+||+++.+....
T Consensus 6 ~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~ 48 (352)
T PRK10422 6 RRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIP 48 (352)
T ss_pred ceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHH
Confidence 469999999999999999999999997 78999998765543
No 250
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=25.18 E-value=1.6e+02 Score=25.86 Aligned_cols=41 Identities=15% Similarity=0.068 Sum_probs=32.0
Q ss_pred CCceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCC
Q 019759 6 RQKLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPK 46 (336)
Q Consensus 6 ~~~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~ 46 (336)
++...|.+.-.|+-|--.-.-.|+++|.++|++|-+++.+.
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDP 67 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDP 67 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-G
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECC
Confidence 45556888889999999999999999999999999998753
No 251
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=25.10 E-value=92 Score=24.11 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=31.2
Q ss_pred CceEEEEEcCCCccchHHHHHHHHHHHhCCC-eEEEEeC
Q 019759 7 QKLHIAMFPWLAYGHIMPFFQVAMFLAEKGH-HVSYIST 44 (336)
Q Consensus 7 ~~~~il~~~~p~~gH~~p~l~la~~La~rGh-~VT~~t~ 44 (336)
.+.+++.++....+|.--+..+.++|.++|. ++.++..
T Consensus 52 ~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 52 ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 3567888888888999999999999999987 6666654
No 252
>PRK06849 hypothetical protein; Provisional
Probab=25.05 E-value=1.4e+02 Score=27.63 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=25.3
Q ss_pred ceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCC
Q 019759 8 KLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 8 ~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~ 45 (336)
+.+|++.-. -...-+++++.|.++||+|+++...
T Consensus 4 ~~~VLI~G~----~~~~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 4 KKTVLITGA----RAPAALELARLFHNAGHTVILADSL 37 (389)
T ss_pred CCEEEEeCC----CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 346776642 2235789999999999999998664
No 253
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=25.04 E-value=1.7e+02 Score=27.85 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=34.9
Q ss_pred eEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 019759 9 LHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNI 48 (336)
Q Consensus 9 ~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~ 48 (336)
.-|+++-.+|.|=..-...||..|.++|++|.+++.+.++
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 3477888899999999999999999999999999987554
No 254
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=24.98 E-value=1.6e+02 Score=23.94 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=30.1
Q ss_pred ceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCC
Q 019759 8 KLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPK 46 (336)
Q Consensus 8 ~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~ 46 (336)
+..+++.-.+|.|=..-..++++++.++|+.|-|++...
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~ 85 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASD 85 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCc
Confidence 346888888888888789999999999999999987643
No 255
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=24.79 E-value=1.9e+02 Score=24.85 Aligned_cols=38 Identities=24% Similarity=0.220 Sum_probs=30.8
Q ss_pred EEEEcC-CCccchHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 019759 11 IAMFPW-LAYGHIMPFFQVAMFLAEKGHHVSYISTPKNI 48 (336)
Q Consensus 11 il~~~~-p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~ 48 (336)
|.|+.. +|-|=..-.+.||.+|++||-.|+++=++.+.
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~ 42 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQ 42 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 344443 77799999999999999999999999776543
No 256
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=24.79 E-value=60 Score=31.23 Aligned_cols=19 Identities=26% Similarity=0.329 Sum_probs=16.8
Q ss_pred HHHHHHHHhCCCeEEEEeC
Q 019759 26 FQVAMFLAEKGHHVSYIST 44 (336)
Q Consensus 26 l~la~~La~rGh~VT~~t~ 44 (336)
+.-|.+|+++||+||++=.
T Consensus 13 L~~a~~La~~g~~vt~~ea 31 (485)
T COG3349 13 LAAAYELADAGYDVTLYEA 31 (485)
T ss_pred HHHHHHHHhCCCceEEEec
Confidence 6789999999999999943
No 257
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=24.77 E-value=93 Score=22.85 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEeC
Q 019759 23 MPFFQVAMFLAEKGHHVSYIST 44 (336)
Q Consensus 23 ~p~l~la~~La~rGh~VT~~t~ 44 (336)
.|.+.|+++|.++|.+|.+.=+
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP 38 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDP 38 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-T
T ss_pred CHHHHHHHHHHHCCCEEEEECC
Confidence 5889999999999999988754
No 258
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=24.62 E-value=73 Score=24.79 Aligned_cols=20 Identities=35% Similarity=0.439 Sum_probs=17.0
Q ss_pred HHHHHHHhCCCeEEEEeCCC
Q 019759 27 QVAMFLAEKGHHVSYISTPK 46 (336)
Q Consensus 27 ~la~~La~rGh~VT~~t~~~ 46 (336)
-+|..|++.||+|++++...
T Consensus 12 ~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 12 LYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp HHHHHHHHTTCEEEEEESHH
T ss_pred HHHHHHHHCCCceEEEEccc
Confidence 47889999999999998654
No 259
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=24.39 E-value=1.6e+02 Score=27.79 Aligned_cols=38 Identities=13% Similarity=0.089 Sum_probs=32.2
Q ss_pred CceEEEEEc-CCCccchHHHHHHHHHHHhCCCeEEEEeC
Q 019759 7 QKLHIAMFP-WLAYGHIMPFFQVAMFLAEKGHHVSYIST 44 (336)
Q Consensus 7 ~~~~il~~~-~p~~gH~~p~l~la~~La~rGh~VT~~t~ 44 (336)
.++.++|+| ..+.||---++.++.++.++|+++.++..
T Consensus 124 ~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~ 162 (409)
T KOG1838|consen 124 TDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNH 162 (409)
T ss_pred CCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECC
Confidence 346788888 57779998899999999999999999864
No 260
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=24.29 E-value=1.1e+02 Score=27.14 Aligned_cols=29 Identities=10% Similarity=-0.112 Sum_probs=23.9
Q ss_pred ccchHHHHHHHHHHHhCCCeEEEEeCCCC
Q 019759 19 YGHIMPFFQVAMFLAEKGHHVSYISTPKN 47 (336)
Q Consensus 19 ~gH~~p~l~la~~La~rGh~VT~~t~~~~ 47 (336)
.|--.-+..|+++|+++||+|++++....
T Consensus 15 gG~~~~~~~l~~~L~~~~~~v~~~~~~~~ 43 (365)
T cd03809 15 TGIGRYARELLRALLKLDPEEVLLLLPGA 43 (365)
T ss_pred CcHHHHHHHHHHHHHhcCCceEEEEecCc
Confidence 45566689999999999999999987543
No 261
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=24.24 E-value=1.9e+02 Score=27.56 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=34.9
Q ss_pred eEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 019759 9 LHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNI 48 (336)
Q Consensus 9 ~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~ 48 (336)
..|+++-.+|.|=..-...||..|.++|++|.+++.+...
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R 135 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR 135 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence 4578888899999999999999999999999999886543
No 262
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=24.02 E-value=88 Score=25.07 Aligned_cols=31 Identities=23% Similarity=0.181 Sum_probs=24.4
Q ss_pred cCCCccchHHHHHHHHHHHhCCCeEEEE-eCC
Q 019759 15 PWLAYGHIMPFFQVAMFLAEKGHHVSYI-STP 45 (336)
Q Consensus 15 ~~p~~gH~~p~l~la~~La~rGh~VT~~-t~~ 45 (336)
|.-+++|+.-+.+-+.+|+.+|.+..++ +.+
T Consensus 57 PtCs~~HvPGyi~~a~elksKGVd~iicvSVn 88 (171)
T KOG0541|consen 57 PTCSSSHVPGYIEKADELKSKGVDEIICVSVN 88 (171)
T ss_pred CccccccCchHHHHHHHHHhcCCcEEEEEecC
Confidence 3447899999999999999999865555 543
No 263
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=23.98 E-value=1.6e+02 Score=21.93 Aligned_cols=30 Identities=20% Similarity=0.321 Sum_probs=25.2
Q ss_pred CccchHHHHHHHHHHHhCCCeEEEEeCCCC
Q 019759 18 AYGHIMPFFQVAMFLAEKGHHVSYISTPKN 47 (336)
Q Consensus 18 ~~gH~~p~l~la~~La~rGh~VT~~t~~~~ 47 (336)
..|+...+...++.+.++|..|..+|....
T Consensus 62 ~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 62 YSGETRELIELLRFAKERGAPVILITSNSE 91 (131)
T ss_dssp SSSTTHHHHHHHHHHHHTTSEEEEEESSTT
T ss_pred ccccchhhhhhhHHHHhcCCeEEEEeCCCC
Confidence 557889999999999999999988886433
No 264
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=23.92 E-value=1.5e+02 Score=25.58 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=22.9
Q ss_pred CceEEE-EEcCCCccchHHHHHHHHHHHhCCCeEEEEeC
Q 019759 7 QKLHIA-MFPWLAYGHIMPFFQVAMFLAEKGHHVSYIST 44 (336)
Q Consensus 7 ~~~~il-~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~ 44 (336)
...+|+ ++|.|-- =.+-+-.....++++||+|++++.
T Consensus 9 ~~~~vL~v~aHPDD-e~~g~ggtla~~~~~G~~V~v~~l 46 (237)
T COG2120 9 DPLRVLVVFAHPDD-EEIGCGGTLAKLAARGVEVTVVCL 46 (237)
T ss_pred cCCcEEEEecCCcc-hhhccHHHHHHHHHCCCeEEEEEc
Confidence 344544 4444432 123355667778999999999975
No 265
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=23.74 E-value=1e+02 Score=28.74 Aligned_cols=36 Identities=22% Similarity=0.222 Sum_probs=26.1
Q ss_pred CceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEE
Q 019759 7 QKLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYI 42 (336)
Q Consensus 7 ~~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~ 42 (336)
.+.-|++|..+..|+-+-.-.++.+||++|+=|..+
T Consensus 98 ~~~PvvIFSHGlgg~R~~yS~~~~eLAS~GyVV~ai 133 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGSRTSYSAICGELASHGYVVAAI 133 (379)
T ss_dssp S-EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE
T ss_pred CCCCEEEEeCCCCcchhhHHHHHHHHHhCCeEEEEe
Confidence 456799999999999999999999999999966554
No 266
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=23.58 E-value=1.5e+02 Score=21.04 Aligned_cols=40 Identities=10% Similarity=-0.046 Sum_probs=25.2
Q ss_pred HHHHhhhhcCCcEEEEcCCCcc--hHHHHH----H-cCCceEEEecc
Q 019759 103 PLTNFLQDSRVNWIIHDFISHW--LPPVAA----Q-LGVNSVFFSIY 142 (336)
Q Consensus 103 ~~~~ll~~~~~D~vv~D~~~~~--~~~vA~----~-~~iP~v~~~~~ 142 (336)
.+.+.++..+||++|.|.-.+. +..+++ . .++|+|+++..
T Consensus 34 ~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~ 80 (112)
T PF00072_consen 34 EALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDE 80 (112)
T ss_dssp HHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESS
T ss_pred HHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecCC
Confidence 3445556668999999985555 333333 2 25778877754
No 267
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=23.47 E-value=1.7e+02 Score=24.53 Aligned_cols=35 Identities=26% Similarity=0.297 Sum_probs=31.7
Q ss_pred EEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCC
Q 019759 11 IAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 11 il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~ 45 (336)
+.+.-.|+.|...-.+.++.+.+++|..|.|++++
T Consensus 26 ~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 26 TQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 56667899999999999999999999999999987
No 268
>PRK03094 hypothetical protein; Provisional
Probab=23.35 E-value=78 Score=22.22 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=16.7
Q ss_pred HHHHHHHHHhCCCeEEEEeC
Q 019759 25 FFQVAMFLAEKGHHVSYIST 44 (336)
Q Consensus 25 ~l~la~~La~rGh~VT~~t~ 44 (336)
+..+.+.|.++||+|.=+..
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred cHHHHHHHHHCCCEEEecCc
Confidence 56789999999999987654
No 269
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=23.15 E-value=74 Score=27.17 Aligned_cols=20 Identities=40% Similarity=0.449 Sum_probs=17.2
Q ss_pred HHHHHHHHhCCCeEEEEeCC
Q 019759 26 FQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 26 l~la~~La~rGh~VT~~t~~ 45 (336)
..+|+.|+++||+|+.+-..
T Consensus 13 ~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 13 RSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred HHHHHHHHhCCCceEEEEcC
Confidence 57899999999999998643
No 270
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=23.08 E-value=6.1e+02 Score=23.55 Aligned_cols=60 Identities=22% Similarity=0.231 Sum_probs=44.4
Q ss_pred CCceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCCCCCCeEEEecC
Q 019759 6 RQKLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKNIDRLPQIPTNLSSRLSYIQLP 68 (336)
Q Consensus 6 ~~~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~~~~~~~~~~~~~~~i~~~~~~ 68 (336)
.++.+++++..+--||-=-|.--|.-||+.|.+|+.+....... ..+.. + .++|+++.++
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p-~e~l~-~-hprI~ih~m~ 69 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIP-LEELL-N-HPRIRIHGMP 69 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCC-hHHHh-c-CCceEEEeCC
Confidence 45568888888888999889999999999999999997533221 11111 1 3689999887
No 271
>PRK04148 hypothetical protein; Provisional
Probab=23.01 E-value=86 Score=24.45 Aligned_cols=29 Identities=31% Similarity=0.285 Sum_probs=20.9
Q ss_pred eEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEe
Q 019759 9 LHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYIS 43 (336)
Q Consensus 9 ~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t 43 (336)
.+++.+-.+ .| ..+|..|++.||+|+.+=
T Consensus 18 ~kileIG~G-fG-----~~vA~~L~~~G~~ViaID 46 (134)
T PRK04148 18 KKIVELGIG-FY-----FKVAKKLKESGFDVIVID 46 (134)
T ss_pred CEEEEEEec-CC-----HHHHHHHHHCCCEEEEEE
Confidence 467666655 33 346888999999999873
No 272
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=22.98 E-value=83 Score=23.40 Aligned_cols=35 Identities=20% Similarity=0.121 Sum_probs=25.4
Q ss_pred eEEEEEeCccccCCHHHHHHHHHHHHhC-C-CceEEE
Q 019759 271 SVVYAAFGTEMTLSQELLHELAYGLEKS-G-LPFIWI 305 (336)
Q Consensus 271 ~VVyvSfGS~~~~~~~~~~~ia~al~~~-~-~~~lW~ 305 (336)
++|+++.||...-..+.++++++.+++. + .+|-+.
T Consensus 2 a~llv~HGS~~~~~~~~~~~l~~~l~~~~~~~~v~~a 38 (117)
T cd03414 2 AVVLVGRGSSDPDANADVAKIARLLEEGTGFARVETA 38 (117)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 5899999998655567888899998753 3 344444
No 273
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=22.91 E-value=85 Score=27.86 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=17.8
Q ss_pred HHHHHHHHhCCCeEEEEeCCCC
Q 019759 26 FQVAMFLAEKGHHVSYISTPKN 47 (336)
Q Consensus 26 l~la~~La~rGh~VT~~t~~~~ 47 (336)
.+|..+|.+.||+||++|-...
T Consensus 12 ~~L~~~L~~~gh~v~iltR~~~ 33 (297)
T COG1090 12 RALTARLRKGGHQVTILTRRPP 33 (297)
T ss_pred HHHHHHHHhCCCeEEEEEcCCc
Confidence 4678888899999999986443
No 274
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=22.89 E-value=1.8e+02 Score=27.10 Aligned_cols=40 Identities=13% Similarity=0.300 Sum_probs=26.3
Q ss_pred hHHHHHhhhhcCCcE-EEEcC--CCcchHHHHHHcCCc--eEEEe
Q 019759 101 QLPLTNFLQDSRVNW-IIHDF--ISHWLPPVAAQLGVN--SVFFS 140 (336)
Q Consensus 101 ~~~~~~ll~~~~~D~-vv~D~--~~~~~~~vA~~~~iP--~v~~~ 140 (336)
...+.+.+.+.+||+ |++|+ |+....-.+++.|++ +|.+.
T Consensus 71 ~~~~~~~~~~~~pd~vIlID~pgFNlrlak~lk~~~~~~~viyYI 115 (373)
T PF02684_consen 71 FRKLVERIKEEKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYYI 115 (373)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHHhCCCceEEEEE
Confidence 344555555668875 55786 655566788899988 66554
No 275
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=22.59 E-value=82 Score=26.64 Aligned_cols=21 Identities=33% Similarity=0.305 Sum_probs=17.7
Q ss_pred HHHHHHHHhCCCeEEEEeCCC
Q 019759 26 FQVAMFLAEKGHHVSYISTPK 46 (336)
Q Consensus 26 l~la~~La~rGh~VT~~t~~~ 46 (336)
..||++|+..||+|++.+...
T Consensus 14 ~alA~~~a~ag~eV~igs~r~ 34 (211)
T COG2085 14 SALALRLAKAGHEVIIGSSRG 34 (211)
T ss_pred HHHHHHHHhCCCeEEEecCCC
Confidence 578999999999999997543
No 276
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=22.43 E-value=1.1e+02 Score=29.38 Aligned_cols=27 Identities=11% Similarity=0.236 Sum_probs=16.7
Q ss_pred hhhcCCcEEEEcCCCcchHHHHHHcCCceE
Q 019759 108 LQDSRVNWIIHDFISHWLPPVAAQLGVNSV 137 (336)
Q Consensus 108 l~~~~~D~vv~D~~~~~~~~vA~~~~iP~v 137 (336)
+++.++|++|.. .....+|+++|+|++
T Consensus 389 i~~~~pDliig~---s~~~~~a~k~giP~~ 415 (475)
T PRK14478 389 LKEAKADIMLSG---GRSQFIALKAGMPWL 415 (475)
T ss_pred HhhcCCCEEEec---CchhhhhhhcCCCEE
Confidence 344466777765 345566777777765
No 277
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=22.35 E-value=2.5e+02 Score=23.00 Aligned_cols=37 Identities=24% Similarity=0.146 Sum_probs=26.7
Q ss_pred HHHHhhhhcCCcEEEEcC--CCcchHHHHHHcCCceEEE
Q 019759 103 PLTNFLQDSRVNWIIHDF--ISHWLPPVAAQLGVNSVFF 139 (336)
Q Consensus 103 ~~~~ll~~~~~D~vv~D~--~~~~~~~vA~~~~iP~v~~ 139 (336)
.+.+..++.++|.||+=- -++.+..+|.++|+|+|..
T Consensus 44 ~~~~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 44 ELAERYKDDGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred HHHHHhcccCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 344444455799888753 4566889999999998875
No 278
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=22.34 E-value=1.6e+02 Score=25.68 Aligned_cols=39 Identities=18% Similarity=0.297 Sum_probs=27.6
Q ss_pred HHHHHhhhhcCCcEEEEcCCCcch-------HHHHHHcCCceEEEec
Q 019759 102 LPLTNFLQDSRVNWIIHDFISHWL-------PPVAAQLGVNSVFFSI 141 (336)
Q Consensus 102 ~~~~~ll~~~~~D~vv~D~~~~~~-------~~vA~~~~iP~v~~~~ 141 (336)
+.+.+++++.++++| +|..-|++ ..+|+++|+|++-|--
T Consensus 56 ~~l~~~l~~~~i~~v-IDATHPfA~~is~na~~a~~~~~ipylR~eR 101 (249)
T PF02571_consen 56 EGLAEFLRENGIDAV-IDATHPFAAEISQNAIEACRELGIPYLRFER 101 (249)
T ss_pred HHHHHHHHhCCCcEE-EECCCchHHHHHHHHHHHHhhcCcceEEEEc
Confidence 456667777777765 47666665 3568899999998754
No 279
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=22.21 E-value=4.5e+02 Score=21.63 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=31.8
Q ss_pred ceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeC
Q 019759 8 KLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYIST 44 (336)
Q Consensus 8 ~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~ 44 (336)
+--|-+.+..++|=..-.+.+|-+-+-+|.+|.++-.
T Consensus 21 ~Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQF 57 (178)
T PRK07414 21 EGLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQF 57 (178)
T ss_pred CCEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEE
Confidence 3457888999999999999999999999999998854
No 280
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=22.15 E-value=2.2e+02 Score=22.68 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=32.2
Q ss_pred EEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCC
Q 019759 11 IAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKN 47 (336)
Q Consensus 11 il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~ 47 (336)
+++.-.+|.|=......++..++++|.+|.++..+..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 5666788999999999999999999999999987644
No 281
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=22.12 E-value=1.3e+02 Score=24.95 Aligned_cols=37 Identities=8% Similarity=-0.046 Sum_probs=28.6
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHh-CCCeEEEEeCCCC
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAE-KGHHVSYISTPKN 47 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~-rGh~VT~~t~~~~ 47 (336)
+|++.-.++.+ ..=...++++|.+ .||+|.++.++.-
T Consensus 3 ~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A 40 (185)
T PRK06029 3 RLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAA 40 (185)
T ss_pred EEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHH
Confidence 56666666655 5558899999999 4999999988643
No 282
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=22.09 E-value=70 Score=28.12 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=16.4
Q ss_pred HHHHHHHhCCCeEEEEeCC
Q 019759 27 QVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 27 ~la~~La~rGh~VT~~t~~ 45 (336)
-+|..|++.||+||+++-.
T Consensus 5 ~~a~~L~~~G~~V~l~~r~ 23 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARG 23 (293)
T ss_pred HHHHHHHhCCCcEEEEecH
Confidence 4688899999999999864
No 283
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=22.07 E-value=99 Score=24.70 Aligned_cols=31 Identities=16% Similarity=0.119 Sum_probs=22.1
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCC
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~ 45 (336)
+|+++-... .-...++.|.+.|++||+++++
T Consensus 15 ~vlVvGGG~-----va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 15 VVVIIGGGK-----IAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred EEEEECCCH-----HHHHHHHHHHhCCCEEEEEcCc
Confidence 556554332 3367889999999999999753
No 284
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=21.92 E-value=1.5e+02 Score=25.09 Aligned_cols=41 Identities=17% Similarity=0.311 Sum_probs=31.5
Q ss_pred cccc-CCCCeEEEEEeCccccCCHHHHHHHHHHHHhCCCceE
Q 019759 263 WLDS-KENNSVVYAAFGTEMTLSQELLHELAYGLEKSGLPFI 303 (336)
Q Consensus 263 wLd~-~~~~~VVyvSfGS~~~~~~~~~~~ia~al~~~~~~~l 303 (336)
|||. .+..-.|||++=..+.-+......|...|...|++++
T Consensus 13 fLdPV~~~~rtVyv~vrNTSd~~~~l~~~i~~~L~~kGY~vv 54 (215)
T PF05818_consen 13 FLDPVAPSQRTVYVQVRNTSDKDINLESQIISALQAKGYQVV 54 (215)
T ss_pred EeCCCCcccceEEEEEecCCCCccchHHHHHHHHHHCCCEEe
Confidence 7776 3456799999988876555666779999999998764
No 285
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=21.91 E-value=1.8e+02 Score=25.14 Aligned_cols=39 Identities=21% Similarity=0.153 Sum_probs=32.7
Q ss_pred EEEEcCCCccchHHHHHHHHHHHhC-CCeEEEEeCCCCCC
Q 019759 11 IAMFPWLAYGHIMPFFQVAMFLAEK-GHHVSYISTPKNID 49 (336)
Q Consensus 11 il~~~~p~~gH~~p~l~la~~La~r-Gh~VT~~t~~~~~~ 49 (336)
+++...|+.|-..-++.+|..++.+ |+.|.|++.+-...
T Consensus 22 ~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~ 61 (259)
T PF03796_consen 22 TVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEE 61 (259)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HH
T ss_pred EEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHH
Confidence 5566689999999999999999998 69999999875543
No 286
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=21.91 E-value=1.7e+02 Score=25.20 Aligned_cols=37 Identities=19% Similarity=0.146 Sum_probs=29.4
Q ss_pred EEEEEcC--CCccchHHHHHHHHHHHhCCCeEEEEeCCC
Q 019759 10 HIAMFPW--LAYGHIMPFFQVAMFLAEKGHHVSYISTPK 46 (336)
Q Consensus 10 ~il~~~~--p~~gH~~p~l~la~~La~rGh~VT~~t~~~ 46 (336)
+++++++ .|-|-....-.|+.+||++|+.|.++-.+-
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~Di 41 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDI 41 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCc
Confidence 4555554 556888899999999999999999997653
No 287
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=21.88 E-value=1.1e+02 Score=25.75 Aligned_cols=39 Identities=13% Similarity=0.035 Sum_probs=23.8
Q ss_pred HHHhhhhc--CCcEEEEcCCCcc---hHHHHHH----cCCceEEEecc
Q 019759 104 LTNFLQDS--RVNWIIHDFISHW---LPPVAAQ----LGVNSVFFSIY 142 (336)
Q Consensus 104 ~~~ll~~~--~~D~vv~D~~~~~---~~~vA~~----~~iP~v~~~~~ 142 (336)
+.+++++. .||+||+|..... -..+|.+ +++|.|.+.-.
T Consensus 83 l~~~~~~l~~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVAK~ 130 (208)
T cd06559 83 LLEALEKLKTKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVAKS 130 (208)
T ss_pred HHHHHHhCCCCCCEEEEeCCccccCCCcchhheeeeecCCCEEEEEcc
Confidence 44444443 5999999986433 3455554 44788876543
No 288
>PRK10239 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase; Provisional
Probab=21.85 E-value=1.1e+02 Score=24.68 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=19.0
Q ss_pred EEEEEeCccccCCHHHHHHHHHHHHhC
Q 019759 272 VVYAAFGTEMTLSQELLHELAYGLEKS 298 (336)
Q Consensus 272 VVyvSfGS~~~~~~~~~~~ia~al~~~ 298 (336)
.||+++||+..-+.+.++.-...|++.
T Consensus 3 ~v~i~lGSN~g~~~~~l~~A~~~L~~~ 29 (159)
T PRK10239 3 VAYIAIGSNLASPLEQVNAALKALGDI 29 (159)
T ss_pred EEEEEEeCchhhHHHHHHHHHHHHhcC
Confidence 589999999865555565555566554
No 289
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=21.82 E-value=1.9e+02 Score=23.01 Aligned_cols=35 Identities=14% Similarity=0.114 Sum_probs=29.1
Q ss_pred EEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCC
Q 019759 11 IAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 11 il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~ 45 (336)
+.++-..+.|=..-+..|+++|.++|++|.++-..
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 45666778888888999999999999999998643
No 290
>PRK06242 flavodoxin; Provisional
Probab=21.60 E-value=1e+02 Score=23.94 Aligned_cols=60 Identities=10% Similarity=-0.042 Sum_probs=33.7
Q ss_pred CeeeeeeccCCCCCCCCCCCccccccccccCCC-CeEEEEEeCccccCCHHHHHHHHHHHHhCCCceE
Q 019759 237 PVLPVGLLAPSLQDSAAGEHWPVLKDWLDSKEN-NSVVYAAFGTEMTLSQELLHELAYGLEKSGLPFI 303 (336)
Q Consensus 237 ~v~~VGpl~~~~~~~~~~~~~~~l~~wLd~~~~-~~VVyvSfGS~~~~~~~~~~~ia~al~~~~~~~l 303 (336)
.++...|+.-.. .++.+.+||+.... ++...+-|||..+......+.+.+.|+..|..++
T Consensus 46 ~ii~g~pvy~~~-------~~~~~~~fl~~~~~~~~k~~~~f~t~g~~~~~~~~~l~~~l~~~g~~~~ 106 (150)
T PRK06242 46 LIGFGSGIYFGK-------FHKSLLKLIEKLPPVSGKKAFIFSTSGLPFLKYHKALKKKLKEKGFEIV 106 (150)
T ss_pred EEEEeCchhcCC-------cCHHHHHHHHhhhhhcCCeEEEEECCCCCcchHHHHHHHHHHHCCCEEE
Confidence 355555655321 23456667664211 2334455556554444446778888888888776
No 291
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=21.56 E-value=1.6e+02 Score=24.09 Aligned_cols=34 Identities=12% Similarity=0.100 Sum_probs=23.9
Q ss_pred EEEEEcCC----CccchHHHHHHHHHHHhCCCeEEEEe
Q 019759 10 HIAMFPWL----AYGHIMPFFQVAMFLAEKGHHVSYIS 43 (336)
Q Consensus 10 ~il~~~~p----~~gH~~p~l~la~~La~rGh~VT~~t 43 (336)
+|.++... ...+..-..+|++.||++||.+.+=.
T Consensus 2 ~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GG 39 (178)
T TIGR00730 2 TVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGG 39 (178)
T ss_pred EEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECC
Confidence 45555543 33566778899999999999877644
No 292
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=21.53 E-value=2e+02 Score=22.39 Aligned_cols=34 Identities=15% Similarity=0.088 Sum_probs=27.2
Q ss_pred EEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEe
Q 019759 10 HIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYIS 43 (336)
Q Consensus 10 ~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t 43 (336)
.|.++-+...|=..-...|.++|.+||++|.++-
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik 35 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIK 35 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEE
Confidence 4677777888999999999999999999998663
No 293
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=21.52 E-value=1.8e+02 Score=25.16 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=25.7
Q ss_pred EEEEcCCCccchHHHHHHHHHHHhCCCe
Q 019759 11 IAMFPWLAYGHIMPFFQVAMFLAEKGHH 38 (336)
Q Consensus 11 il~~~~p~~gH~~p~l~la~~La~rGh~ 38 (336)
|+|+-.|..|-..-..+|.+.|++||++
T Consensus 4 Vvi~G~P~SGKstrA~~L~~~l~~~~~K 31 (281)
T KOG3062|consen 4 VVICGLPCSGKSTRAVELREALKERGTK 31 (281)
T ss_pred EEEeCCCCCCchhHHHHHHHHHHhhccc
Confidence 6777799999999999999999999985
No 294
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=21.49 E-value=3e+02 Score=25.33 Aligned_cols=31 Identities=6% Similarity=0.145 Sum_probs=21.9
Q ss_pred cCCcEEE-EcC--CCcchHHHHHHc--CCceEEEec
Q 019759 111 SRVNWII-HDF--ISHWLPPVAAQL--GVNSVFFSI 141 (336)
Q Consensus 111 ~~~D~vv-~D~--~~~~~~~vA~~~--~iP~v~~~~ 141 (336)
.+||++| +|+ |+....-.+++. |+|++.+.+
T Consensus 75 ~~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi~ 110 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYIL 110 (347)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEEC
Confidence 4788665 587 665566677888 699987654
No 295
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=21.34 E-value=1.6e+02 Score=25.78 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=25.7
Q ss_pred EEEEEcC--CCccchHHHHHHHHHHHhCCCeEEEEeCCC
Q 019759 10 HIAMFPW--LAYGHIMPFFQVAMFLAEKGHHVSYISTPK 46 (336)
Q Consensus 10 ~il~~~~--p~~gH~~p~l~la~~La~rGh~VT~~t~~~ 46 (336)
||+++.. +|-|--.....||-.|++.|++|-++=.+-
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di 39 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDI 39 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--T
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4444443 667888889999999999999999996654
No 296
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=21.18 E-value=1.6e+02 Score=24.84 Aligned_cols=39 Identities=10% Similarity=0.080 Sum_probs=22.0
Q ss_pred HHHhhhh--cCCcEEEEcCCCcc-------hHHHHHHcCCceEEEecc
Q 019759 104 LTNFLQD--SRVNWIIHDFISHW-------LPPVAAQLGVNSVFFSIY 142 (336)
Q Consensus 104 ~~~ll~~--~~~D~vv~D~~~~~-------~~~vA~~~~iP~v~~~~~ 142 (336)
+.+++++ .++|+|++|..... |..++-.+++|.|.+.-.
T Consensus 79 ~l~~l~~l~~~~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIGVAK~ 126 (206)
T PF04493_consen 79 ILEALEKLKNKPDVILVDGHGILHPRRFGLASHLGVLLDIPTIGVAKS 126 (206)
T ss_dssp HHHHHHTSSS--SCEEEES-SSSSTTS--HHHHHHHHHTS-EEEEESS
T ss_pred HHHHHHHhcccCCEEEEeCceeecCCCcChhheeeeccCCCEEEEeCc
Confidence 3444444 36899999985433 234556677899987654
No 297
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=21.09 E-value=2.1e+02 Score=23.66 Aligned_cols=39 Identities=21% Similarity=0.065 Sum_probs=26.7
Q ss_pred HHHHhhhhcCCcEEEEcC--CCcchHHHHHHcCCceEEEec
Q 019759 103 PLTNFLQDSRVNWIIHDF--ISHWLPPVAAQLGVNSVFFSI 141 (336)
Q Consensus 103 ~~~~ll~~~~~D~vv~D~--~~~~~~~vA~~~~iP~v~~~~ 141 (336)
.+.+.+++.++|+|+.=- -++.+..+|.++|+|.+..-.
T Consensus 41 ~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK 81 (189)
T PRK09219 41 EFARRFKDEGITKILTIEASGIAPAVMAALALGVPVVFAKK 81 (189)
T ss_pred HHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEEE
Confidence 333344455789988632 344467899999999988754
No 298
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=21.05 E-value=1.5e+02 Score=28.93 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEe
Q 019759 8 KLHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYIS 43 (336)
Q Consensus 8 ~~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t 43 (336)
+.+|-+++... +..-=+..|-+.|..-|.+++++.
T Consensus 220 ~~~VNii~g~~-~~~gd~~eikrlL~~~Gi~~~~l~ 254 (515)
T TIGR01286 220 NGKINIIPGFE-TYIGNFREIKRILSLMGVGYTLLS 254 (515)
T ss_pred CCeEEEECCCC-CCchhHHHHHHHHHHcCCCeEEcc
Confidence 35677776221 111226788888888899999764
No 299
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=21.00 E-value=2e+02 Score=20.05 Aligned_cols=34 Identities=12% Similarity=-0.034 Sum_probs=26.2
Q ss_pred EEEEEcCCCc--cchHHHHHHHHHHHhCCCeEEEEe
Q 019759 10 HIAMFPWLAY--GHIMPFFQVAMFLAEKGHHVSYIS 43 (336)
Q Consensus 10 ~il~~~~p~~--gH~~p~l~la~~La~rGh~VT~~t 43 (336)
.++++|.... .+..-...++..|.+.|..|.+-.
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~ 38 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD 38 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 5788886653 466678889999999999998753
No 300
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=20.98 E-value=3.2e+02 Score=23.60 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=14.2
Q ss_pred HHHHHcCCceEEEeccch
Q 019759 127 PVAAQLGVNSVFFSIYSA 144 (336)
Q Consensus 127 ~vA~~~~iP~v~~~~~~~ 144 (336)
..++.+|||++.+.+.+.
T Consensus 285 r~~R~~~iPvvMltSGGY 302 (324)
T KOG1344|consen 285 RTFRALGIPVVMLTSGGY 302 (324)
T ss_pred HHHHHcCCcEEEEecCce
Confidence 568899999998877654
No 301
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=20.97 E-value=89 Score=27.97 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=17.2
Q ss_pred HHHHHHHHhCCCeEEEEeCC
Q 019759 26 FQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 26 l~la~~La~rGh~VT~~t~~ 45 (336)
+.+|.+|+++|++||++-..
T Consensus 12 ~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 12 LSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp HHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHCCCeEEEEeec
Confidence 56889999999999999654
No 302
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=20.77 E-value=1.6e+02 Score=27.79 Aligned_cols=30 Identities=17% Similarity=0.347 Sum_probs=23.0
Q ss_pred hhhcCCcEEEEcCCCcchHHHHHHcCCceEEEe
Q 019759 108 LQDSRVNWIIHDFISHWLPPVAAQLGVNSVFFS 140 (336)
Q Consensus 108 l~~~~~D~vv~D~~~~~~~~vA~~~~iP~v~~~ 140 (336)
+++.++|++|.. +.+..+|+++|||.+.+.
T Consensus 346 ~~~~~pDl~Ig~---s~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 346 VEEYRPDLAIGT---TPLVQYAKEKGIPALYYT 375 (416)
T ss_pred HhhcCCCEEEeC---ChhhHHHHHhCCCEEEec
Confidence 345589999977 346779999999987754
No 303
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=20.76 E-value=2.3e+02 Score=23.51 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=25.4
Q ss_pred HHHhhhhcCCcEEEE-cCC-CcchHHHHHHcCCceEEEec
Q 019759 104 LTNFLQDSRVNWIIH-DFI-SHWLPPVAAQLGVNSVFFSI 141 (336)
Q Consensus 104 ~~~ll~~~~~D~vv~-D~~-~~~~~~vA~~~~iP~v~~~~ 141 (336)
+.+.+++.++|+|+. +.- ++.+..+|.++|+|.+..--
T Consensus 42 l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~vRK 81 (191)
T TIGR01744 42 FARRFADDGITKIVTIEASGIAPAIMTGLKLGVPVVFARK 81 (191)
T ss_pred HHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEEe
Confidence 333344457899884 332 34466899999999988754
No 304
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=20.72 E-value=1.4e+02 Score=23.80 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=28.6
Q ss_pred hHHHHHhhhhcCCcEEEEcCCCcc---hHHHHHHcCCceEEEec
Q 019759 101 QLPLTNFLQDSRVNWIIHDFISHW---LPPVAAQLGVNSVFFSI 141 (336)
Q Consensus 101 ~~~~~~ll~~~~~D~vv~D~~~~~---~~~vA~~~~iP~v~~~~ 141 (336)
...+.+++++.+||+|+.-.-... +..+|.++++|++.-.+
T Consensus 79 a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 79 ADALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp HHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 345666777778999999875444 34799999999887554
No 305
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=20.71 E-value=91 Score=21.89 Aligned_cols=22 Identities=27% Similarity=0.223 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhCCCeEEEEeCC
Q 019759 24 PFFQVAMFLAEKGHHVSYISTP 45 (336)
Q Consensus 24 p~l~la~~La~rGh~VT~~t~~ 45 (336)
.+..+.+.|.++||+|+=+...
T Consensus 9 ~Ls~v~~~L~~~GyeVv~l~~~ 30 (80)
T PF03698_consen 9 GLSNVKEALREKGYEVVDLENE 30 (80)
T ss_pred CchHHHHHHHHCCCEEEecCCc
Confidence 3567899999999999977644
No 306
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II. Homologs scoring between trusted and noise cutoff include proteins involved in antibiotic biosynthesis; one example is active as this enzyme, while another acts on an amino analog.
Probab=20.69 E-value=1.9e+02 Score=27.42 Aligned_cols=77 Identities=13% Similarity=0.217 Sum_probs=44.5
Q ss_pred hchHhHHHHHHhhhCCCeeeeeeccCCCCCCCCCCCccccccc---cccC--CCCeEEEEEeCccccCCHHHHHHHHHHH
Q 019759 221 EFEPDALRLLGKMLQKPVLPVGLLAPSLQDSAAGEHWPVLKDW---LDSK--ENNSVVYAAFGTEMTLSQELLHELAYGL 295 (336)
Q Consensus 221 ~le~~~~~~l~~~~~p~v~~VGpl~~~~~~~~~~~~~~~l~~w---Ld~~--~~~~VVyvSfGS~~~~~~~~~~~ia~al 295 (336)
.+++.-++.++..-.|-=+=|||-.. ++++.+. ||.+ +.+-.+..=||.-.. .+.+=.++++.
T Consensus 266 qlDgAHVef~rgI~NPIGvKvGP~~~----------p~~l~~L~~~LnP~~epGRlTLI~RmGa~kV--~~~LP~li~aV 333 (443)
T TIGR01358 266 QLDGAHVEFLRGVRNPIGIKVGPSMT----------PDELLRLIERLNPENEPGRLTLISRMGADKI--ADKLPPLLRAV 333 (443)
T ss_pred CCCchHHHHHhcCCCCeeEEECCCCC----------HHHHHHHHHHhCCCCCCceEEEEeccCchHH--HHhHHHHHHHH
Confidence 45555566666554455566787553 2333333 3322 223334444554321 24445589999
Q ss_pred HhCCCceEEEEeCC
Q 019759 296 EKSGLPFIWIIKNR 309 (336)
Q Consensus 296 ~~~~~~~lW~~r~~ 309 (336)
++.|++|+|+..+=
T Consensus 334 ~~~G~~VvW~cDPM 347 (443)
T TIGR01358 334 KAAGRRVVWVCDPM 347 (443)
T ss_pred HHcCCceEEeecCC
Confidence 99999999998763
No 307
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=20.64 E-value=1.4e+02 Score=24.95 Aligned_cols=31 Identities=13% Similarity=0.083 Sum_probs=22.4
Q ss_pred CCc-EEEEcCCCcc-hHHHHHHcCCceEEEecc
Q 019759 112 RVN-WIIHDFISHW-LPPVAAQLGVNSVFFSIY 142 (336)
Q Consensus 112 ~~D-~vv~D~~~~~-~~~vA~~~~iP~v~~~~~ 142 (336)
.|| +||+|+..-. +..-|.++|||+|++.-+
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DT 140 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEASEVGIPIVALCDT 140 (196)
T ss_pred CCCEEEEECCccccHHHHHHHHcCCCEEEEeeC
Confidence 366 5556775433 668899999999998654
No 308
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=20.64 E-value=1.8e+02 Score=27.61 Aligned_cols=18 Identities=11% Similarity=0.194 Sum_probs=15.0
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 019759 25 FFQVAMFLAEKGHHVSYI 42 (336)
Q Consensus 25 ~l~la~~La~rGh~VT~~ 42 (336)
+.+|-+.|.+-|.+++++
T Consensus 176 ~~el~~lL~~~Gl~~~~~ 193 (435)
T cd01974 176 MREIKRLLELMGVDYTIL 193 (435)
T ss_pred HHHHHHHHHHcCCCEEEe
Confidence 778888888889998764
No 309
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=20.63 E-value=1.8e+02 Score=27.69 Aligned_cols=34 Identities=3% Similarity=-0.072 Sum_probs=19.7
Q ss_pred eEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEe
Q 019759 9 LHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYIS 43 (336)
Q Consensus 9 ~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t 43 (336)
.+|-+++.... ...-+..|-+.|.+-|.+++++.
T Consensus 168 ~~VNiig~~~~-~~~d~~elk~lL~~~Gl~~~~l~ 201 (432)
T TIGR01285 168 RRVNLLVGSLL-TPGDIEELRRMVEAFGLKPIILP 201 (432)
T ss_pred CeEEEEcCCCC-CccCHHHHHHHHHHcCCceEEec
Confidence 34666542210 12346777777778888887653
No 310
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=20.58 E-value=1.2e+02 Score=21.05 Aligned_cols=30 Identities=20% Similarity=0.174 Sum_probs=20.5
Q ss_pred CCcEEEEcC--CCcchHHHHHHcCCceEEEec
Q 019759 112 RVNWIIHDF--ISHWLPPVAAQLGVNSVFFSI 141 (336)
Q Consensus 112 ~~D~vv~D~--~~~~~~~vA~~~~iP~v~~~~ 141 (336)
+.--||++. ....+.-+|+.+|+|.++-..
T Consensus 30 ~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~~ 61 (80)
T PF00391_consen 30 RVAGIVTEEGGPTSHAAILARELGIPAIVGVG 61 (80)
T ss_dssp TSSEEEESSSSTTSHHHHHHHHTT-EEEESTT
T ss_pred heEEEEEEcCCccchHHHHHHHcCCCEEEeec
Confidence 566677776 344467899999999887543
No 311
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=20.58 E-value=2e+02 Score=23.04 Aligned_cols=34 Identities=21% Similarity=0.185 Sum_probs=17.6
Q ss_pred EEEEEeCccccC----C----HHHHHHHHHHHHhCCCceEEE
Q 019759 272 VVYAAFGTEMTL----S----QELLHELAYGLEKSGLPFIWI 305 (336)
Q Consensus 272 VVyvSfGS~~~~----~----~~~~~~ia~al~~~~~~~lW~ 305 (336)
+|.|++|+.-.. + .+.++.+.+.+...+.+++|.
T Consensus 70 ~vii~~G~ND~~~~~~~~~~~~~~~~~~i~~i~~~~~~vil~ 111 (185)
T cd01832 70 LVTLLAGGNDILRPGTDPDTYRADLEEAVRRLRAAGARVVVF 111 (185)
T ss_pred EEEEeccccccccCCCCHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 666677765432 2 333344555555445555554
No 312
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=20.50 E-value=1.5e+02 Score=25.49 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=24.9
Q ss_pred CCccch-HHHHHHHHHHHhC--CCeEEEEeCCCCC
Q 019759 17 LAYGHI-MPFFQVAMFLAEK--GHHVSYISTPKNI 48 (336)
Q Consensus 17 p~~gH~-~p~l~la~~La~r--Gh~VT~~t~~~~~ 48 (336)
-|.|+. .=...+.++|.++ |++|.++.++.-.
T Consensus 7 tGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~ 41 (234)
T TIGR02700 7 TGAGHLLVESFQVMKELKREIEELRVSTFVSRAGE 41 (234)
T ss_pred eCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHH
Confidence 344555 5789999999999 9999999876433
No 313
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=20.34 E-value=1.9e+02 Score=26.49 Aligned_cols=43 Identities=16% Similarity=0.286 Sum_probs=26.0
Q ss_pred CCCeEEEEEeCccccCC-H---HHHHHHHHHHHhC-CCceEEEEeCCC
Q 019759 268 ENNSVVYAAFGTEMTLS-Q---ELLHELAYGLEKS-GLPFIWIIKNRP 310 (336)
Q Consensus 268 ~~~~VVyvSfGS~~~~~-~---~~~~~ia~al~~~-~~~~lW~~r~~~ 310 (336)
.++..+++++=...+.. + +++.++.++|.+. +.+|||.+.+++
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p 225 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNP 225 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-H
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCc
Confidence 46779999886555555 3 4556666667666 678999988553
No 314
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=20.29 E-value=1.7e+02 Score=21.55 Aligned_cols=37 Identities=11% Similarity=0.204 Sum_probs=25.1
Q ss_pred HHHHHhhhhcCCcEEEEcC---CCcchHHHHHHcCCceEE
Q 019759 102 LPLTNFLQDSRVNWIIHDF---ISHWLPPVAAQLGVNSVF 138 (336)
Q Consensus 102 ~~~~~ll~~~~~D~vv~D~---~~~~~~~vA~~~~iP~v~ 138 (336)
+.+.++.++.++|+||+.+ +.....+..++.|+|+..
T Consensus 52 ~~l~~~a~~~~idlvvvGPE~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 52 EELADFAKENKIDLVVVGPEAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp HHHHHHHHHTTESEEEESSHHHHHTTHHHHHHHTT-CEES
T ss_pred HHHHHHHHHcCCCEEEECChHHHHHHHHHHHHHCCCcEEC
Confidence 3455566677899999987 334445777888888654
No 315
>PRK14974 cell division protein FtsY; Provisional
Probab=20.18 E-value=2.8e+02 Score=25.44 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=33.9
Q ss_pred eEEEEEcCCCccchHHHHHHHHHHHhCCCeEEEEeCCCC
Q 019759 9 LHIAMFPWLAYGHIMPFFQVAMFLAEKGHHVSYISTPKN 47 (336)
Q Consensus 9 ~~il~~~~p~~gH~~p~l~la~~La~rGh~VT~~t~~~~ 47 (336)
..|+|+-.+|.|=..-...||..|.++|++|.+++++..
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 457888889999999999999999999999999887543
No 316
>COG1036 Archaeal flavoproteins [Energy production and conversion]
Probab=20.16 E-value=2.3e+02 Score=22.98 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=32.5
Q ss_pred CCCCCCCceEEEEEcCCCccchHH-HHHHHHHHHhC--CCeEEEEeCC
Q 019759 1 MDLQNRQKLHIAMFPWLAYGHIMP-FFQVAMFLAEK--GHHVSYISTP 45 (336)
Q Consensus 1 ~~~~~~~~~~il~~~~p~~gH~~p-~l~la~~La~r--Gh~VT~~t~~ 45 (336)
|+-.++.+.+|+-.-. |.||..+ .-++.++|.++ +|+|+++-..
T Consensus 1 ~~~~~~~~~rIaWgIT-GaG~~L~Et~~imk~lk~~~~~~~v~v~lSk 47 (187)
T COG1036 1 MEMTEKKKKRIAWGIT-GAGHLLPETYQIMKELKKEYGDVEVDVFLSK 47 (187)
T ss_pred CcccccccceEEEEEe-ccccccHHHHHHHHHHHhhcCCceEEEeehh
Confidence 4444456667776554 5599988 78999999998 6899988754
No 317
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.05 E-value=2.2e+02 Score=24.81 Aligned_cols=38 Identities=11% Similarity=0.108 Sum_probs=25.0
Q ss_pred HHhhhhcCCcEEEEcCCCcc-hH-HHHHHcCCceEEEecc
Q 019759 105 TNFLQDSRVNWIIHDFISHW-LP-PVAAQLGVNSVFFSIY 142 (336)
Q Consensus 105 ~~ll~~~~~D~vv~D~~~~~-~~-~vA~~~~iP~v~~~~~ 142 (336)
.+.+++.+..||+++..... .. .+|+..|++++.+.+.
T Consensus 210 ~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~ 249 (266)
T cd01018 210 IDLAKEKGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPL 249 (266)
T ss_pred HHHHHHcCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCc
Confidence 34445557788888876555 33 6778888887766544
No 318
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=20.05 E-value=94 Score=25.11 Aligned_cols=48 Identities=8% Similarity=0.083 Sum_probs=33.3
Q ss_pred ccccccccccCCCCeEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEeC
Q 019759 257 WPVLKDWLDSKENNSVVYAAFGTEMTLSQELLHELAYGLEKSGLPFIWIIKN 308 (336)
Q Consensus 257 ~~~l~~wLd~~~~~~VVyvSfGS~~~~~~~~~~~ia~al~~~~~~~lW~~r~ 308 (336)
|+.+.+.|.+ .+++|+++.-|....-..+.++++++.+ +.+|+-....
T Consensus 17 p~~aa~lLk~-AKRPvIivG~ga~~~~a~e~l~~laEkl---giPVvtT~~~ 64 (162)
T TIGR00315 17 PKLVAMMIKR-AKRPLLIVGPENLEDEEKELIVKFIEKF---DLPVVATADT 64 (162)
T ss_pred HHHHHHHHHc-CCCcEEEECCCcCcccHHHHHHHHHHHH---CCCEEEcCcc
Confidence 5677778886 5899999987776443455556666555 8898877643
Done!