Query 019762
Match_columns 336
No_of_seqs 265 out of 1062
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 06:43:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019762.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019762hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmn_A Homeobox protein TGIF2L 99.8 4.1E-19 1.4E-23 140.0 7.4 66 250-315 7-72 (83)
2 1x2n_A Homeobox protein pknox1 99.7 2.8E-18 9.4E-23 131.4 7.7 66 250-315 7-72 (73)
3 3k2a_A Homeobox protein MEIS2; 99.7 3.6E-18 1.2E-22 129.6 6.9 62 254-315 2-63 (67)
4 2lk2_A Homeobox protein TGIF1; 99.7 6.9E-18 2.4E-22 135.5 6.6 59 254-312 9-67 (89)
5 1du6_A PBX1, homeobox protein 99.7 1.2E-17 4E-22 124.7 7.0 62 250-311 3-64 (64)
6 1puf_B PRE-B-cell leukemia tra 99.7 2.9E-17 9.8E-22 125.8 7.8 64 251-314 2-65 (73)
7 1k61_A Mating-type protein alp 99.7 3.2E-17 1.1E-21 120.9 7.5 59 253-311 1-59 (60)
8 1le8_B Mating-type protein alp 99.7 3.8E-17 1.3E-21 128.5 8.1 64 251-314 3-66 (83)
9 1b72_B Protein (PBX1); homeodo 99.7 5.3E-17 1.8E-21 128.1 6.6 64 251-314 2-65 (87)
10 1mnm_C Protein (MAT alpha-2 tr 99.7 9.4E-17 3.2E-21 127.0 7.5 61 250-310 27-87 (87)
11 2ecc_A Homeobox and leucine zi 99.6 3.7E-15 1.3E-19 116.4 8.1 60 252-314 5-64 (76)
12 1akh_A Protein (mating-type pr 99.6 2.5E-15 8.4E-20 110.9 6.6 57 250-309 5-61 (61)
13 2cra_A Homeobox protein HOX-B1 99.6 4.6E-15 1.6E-19 112.7 8.1 63 250-315 7-69 (70)
14 2dmu_A Homeobox protein goosec 99.6 3.7E-15 1.3E-19 113.1 7.4 63 250-315 7-69 (70)
15 2djn_A Homeobox protein DLX-5; 99.6 4.3E-15 1.5E-19 112.9 7.0 63 250-315 7-69 (70)
16 2da2_A Alpha-fetoprotein enhan 99.6 7.5E-15 2.6E-19 111.3 7.8 63 250-315 7-69 (70)
17 2e1o_A Homeobox protein PRH; D 99.6 5.7E-15 1.9E-19 112.2 7.1 63 250-315 7-69 (70)
18 1bw5_A ISL-1HD, insulin gene e 99.6 7.8E-15 2.7E-19 110.1 7.6 61 250-313 3-63 (66)
19 2dmt_A Homeobox protein BARH-l 99.5 1.1E-14 3.6E-19 113.5 8.0 63 250-315 17-79 (80)
20 2hdd_A Protein (engrailed home 99.5 8.4E-15 2.9E-19 108.3 7.0 59 250-311 3-61 (61)
21 2da3_A Alpha-fetoprotein enhan 99.5 8.3E-15 2.8E-19 113.4 7.2 63 250-315 17-79 (80)
22 2da1_A Alpha-fetoprotein enhan 99.5 9.9E-15 3.4E-19 110.6 6.9 63 250-315 7-69 (70)
23 1ig7_A Homeotic protein MSX-1; 99.5 1.7E-14 5.9E-19 105.3 6.8 57 251-310 1-57 (58)
24 2h1k_A IPF-1, pancreatic and d 99.5 2E-14 6.8E-19 107.0 6.8 59 250-311 3-61 (63)
25 1jgg_A Segmentation protein EV 99.5 2.3E-14 7.8E-19 105.6 6.8 57 251-310 2-58 (60)
26 1ahd_P Antennapedia protein mu 99.5 1.8E-14 6.3E-19 109.0 6.1 62 250-314 2-63 (68)
27 2da4_A Hypothetical protein DK 99.5 8.5E-15 2.9E-19 113.9 4.3 65 250-314 8-73 (80)
28 2vi6_A Homeobox protein nanog; 99.5 3.4E-14 1.2E-18 105.4 7.1 58 250-310 3-60 (62)
29 2k40_A Homeobox expressed in E 99.5 3.3E-14 1.1E-18 107.0 7.0 60 251-313 2-61 (67)
30 1fjl_A Paired protein; DNA-bin 99.5 9.7E-15 3.3E-19 113.8 4.2 61 249-312 17-77 (81)
31 2dms_A Homeobox protein OTX2; 99.5 4.2E-14 1.4E-18 110.0 7.8 62 250-314 7-68 (80)
32 2l7z_A Homeobox protein HOX-A1 99.5 4.9E-14 1.7E-18 108.0 7.9 62 250-314 7-68 (73)
33 3rkq_A Homeobox protein NKX-2. 99.5 3.7E-14 1.3E-18 103.0 6.5 57 250-309 2-58 (58)
34 1ftt_A TTF-1 HD, thyroid trans 99.5 5.2E-14 1.8E-18 106.4 7.3 62 250-314 2-63 (68)
35 1wh5_A ZF-HD homeobox family p 99.5 4.5E-14 1.5E-18 110.6 6.9 62 250-311 17-79 (80)
36 2dmq_A LIM/homeobox protein LH 99.5 3.8E-14 1.3E-18 110.0 6.3 59 250-311 7-65 (80)
37 2dn0_A Zinc fingers and homeob 99.5 1.1E-13 3.7E-18 106.7 7.8 61 251-314 9-69 (76)
38 3a02_A Homeobox protein arista 99.5 8.3E-14 2.8E-18 102.6 6.7 57 253-312 2-58 (60)
39 1nk2_P Homeobox protein VND; h 99.5 8.8E-14 3E-18 107.5 6.7 59 250-311 9-67 (77)
40 1zq3_P PRD-4, homeotic bicoid 99.5 6.8E-14 2.3E-18 105.8 5.9 60 250-312 2-61 (68)
41 1yz8_P Pituitary homeobox 2; D 99.5 2.6E-14 8.8E-19 108.0 3.6 62 250-314 3-64 (68)
42 2cue_A Paired box protein PAX6 99.4 7.9E-14 2.7E-18 108.6 5.8 60 250-312 7-66 (80)
43 2ecb_A Zinc fingers and homeob 99.4 3E-13 1E-17 108.4 9.3 57 255-314 16-72 (89)
44 2kt0_A Nanog, homeobox protein 99.4 1.8E-13 6.3E-18 107.0 7.7 60 250-312 22-81 (84)
45 1puf_A HOX-1.7, homeobox prote 99.4 1.6E-13 5.5E-18 106.1 6.9 59 250-311 13-71 (77)
46 1b8i_A Ultrabithorax, protein 99.4 1.7E-13 6E-18 107.0 7.2 60 250-312 20-79 (81)
47 2ly9_A Zinc fingers and homeob 99.4 3.4E-13 1.2E-17 103.1 8.6 63 251-316 7-69 (74)
48 2m0c_A Homeobox protein arista 99.4 2.2E-13 7.5E-18 104.0 7.4 61 250-313 9-69 (75)
49 3a03_A T-cell leukemia homeobo 99.4 1.4E-13 4.7E-18 100.3 6.0 54 255-311 2-55 (56)
50 2hi3_A Homeodomain-only protei 99.4 1.4E-13 4.7E-18 105.4 6.0 59 251-312 3-62 (73)
51 2da5_A Zinc fingers and homeob 99.4 2.7E-13 9.2E-18 104.5 7.6 59 252-313 9-67 (75)
52 1uhs_A HOP, homeodomain only p 99.4 1.9E-13 6.4E-18 104.3 6.3 58 252-312 3-61 (72)
53 2cuf_A FLJ21616 protein; homeo 99.4 1.3E-13 4.6E-18 110.6 5.6 61 250-313 7-82 (95)
54 2dmp_A Zinc fingers and homeob 99.4 6.4E-13 2.2E-17 105.8 9.0 63 255-320 18-80 (89)
55 3a01_A Homeodomain-containing 99.4 2E-13 6.9E-18 109.5 6.1 61 250-313 17-77 (93)
56 2r5y_A Homeotic protein sex co 99.4 3.4E-13 1.2E-17 106.7 6.6 60 250-312 28-87 (88)
57 2d5v_A Hepatocyte nuclear fact 99.4 3.7E-13 1.3E-17 117.6 7.3 62 249-313 96-157 (164)
58 3nau_A Zinc fingers and homeob 99.4 2.9E-13 9.8E-18 103.1 5.5 52 256-310 10-61 (66)
59 3d1n_I POU domain, class 6, tr 99.4 5.2E-13 1.8E-17 115.6 7.1 58 250-310 93-150 (151)
60 3nar_A ZHX1, zinc fingers and 99.4 9.6E-13 3.3E-17 105.9 7.6 60 250-312 25-84 (96)
61 1b72_A Protein (homeobox prote 99.4 5.5E-13 1.9E-17 107.4 6.0 59 250-311 34-92 (97)
62 1wh7_A ZF-HD homeobox family p 99.4 5.6E-13 1.9E-17 104.6 5.4 61 250-311 17-79 (80)
63 2cqx_A LAG1 longevity assuranc 99.4 7.6E-13 2.6E-17 101.7 5.8 61 252-315 10-71 (72)
64 2e19_A Transcription factor 8; 99.3 1.8E-12 6.2E-17 97.5 7.3 56 253-311 6-61 (64)
65 1e3o_C Octamer-binding transcr 99.3 1.8E-12 6.3E-17 113.3 7.5 59 250-311 101-159 (160)
66 1wi3_A DNA-binding protein SAT 99.3 2.5E-12 8.6E-17 98.6 7.2 65 249-315 6-70 (71)
67 2xsd_C POU domain, class 3, tr 99.3 1.8E-12 6.2E-17 114.1 7.1 62 250-314 99-160 (164)
68 1au7_A Protein PIT-1, GHF-1; c 99.3 2.7E-12 9.3E-17 110.8 7.5 59 250-311 87-145 (146)
69 2l9r_A Homeobox protein NKX-3. 99.3 4.2E-12 1.4E-16 97.1 7.3 56 256-314 10-65 (69)
70 1x2m_A LAG1 longevity assuranc 99.3 2.8E-12 9.5E-17 97.1 6.1 54 259-315 9-63 (64)
71 1lfb_A Liver transcription fac 99.3 4.4E-12 1.5E-16 103.4 6.4 63 248-313 7-90 (99)
72 2da6_A Hepatocyte nuclear fact 99.2 8.6E-12 2.9E-16 102.4 6.0 60 250-312 6-86 (102)
73 3l1p_A POU domain, class 5, tr 99.2 5.1E-12 1.8E-16 110.0 4.6 59 250-311 96-154 (155)
74 1mh3_A Maltose binding-A1 home 99.1 1.1E-10 3.6E-15 112.1 5.6 54 253-309 368-421 (421)
75 2h8r_A Hepatocyte nuclear fact 99.1 1.6E-10 5.6E-15 106.3 6.5 56 250-308 142-218 (221)
76 1ic8_A Hepatocyte nuclear fact 99.0 1E-10 3.6E-15 105.8 4.0 58 250-310 115-193 (194)
77 2da7_A Zinc finger homeobox pr 99.0 1.3E-09 4.6E-14 83.7 6.9 48 259-309 14-61 (71)
78 2nzz_A Penetratin conjugated G 96.5 0.00034 1.2E-08 47.3 -0.4 19 295-313 1-19 (37)
79 2ys9_A Homeobox and leucine zi 95.1 0.014 4.9E-07 44.6 3.2 44 257-303 13-56 (70)
80 1hlv_A CENP-B, major centromer 72.0 9.4 0.00032 30.3 6.5 50 253-308 4-53 (131)
81 2glo_A Brinker CG9653-PA; prot 64.0 11 0.00038 26.2 4.8 48 253-304 2-49 (59)
82 2o8x_A Probable RNA polymerase 61.3 6.5 0.00022 27.5 3.1 49 256-312 15-63 (70)
83 3hug_A RNA polymerase sigma fa 60.4 5.7 0.00019 30.0 2.9 48 256-311 37-84 (92)
84 1tc3_C Protein (TC3 transposas 54.0 20 0.00067 22.5 4.3 42 255-304 4-45 (51)
85 3mzy_A RNA polymerase sigma-H 53.6 9.3 0.00032 30.4 3.2 47 256-311 109-155 (164)
86 2elh_A CG11849-PA, LD40883P; s 53.5 47 0.0016 24.7 7.1 46 252-305 18-63 (87)
87 2p7v_B Sigma-70, RNA polymeras 53.0 13 0.00043 26.4 3.5 54 256-313 5-58 (68)
88 1ku3_A Sigma factor SIGA; heli 50.6 14 0.00047 26.5 3.5 53 256-312 10-63 (73)
89 1tty_A Sigma-A, RNA polymerase 49.1 15 0.0005 27.5 3.5 53 256-312 18-70 (87)
90 3c57_A Two component transcrip 47.4 29 0.00099 26.4 5.0 50 256-314 27-76 (95)
91 2rnj_A Response regulator prot 45.1 40 0.0014 25.1 5.5 49 256-313 29-77 (91)
92 1x3u_A Transcriptional regulat 41.5 21 0.00072 25.5 3.2 47 257-312 17-63 (79)
93 1s7o_A Hypothetical UPF0122 pr 41.0 21 0.00073 28.5 3.5 47 256-310 22-68 (113)
94 1or7_A Sigma-24, RNA polymeras 40.7 16 0.00055 30.2 2.8 48 257-312 141-188 (194)
95 1rp3_A RNA polymerase sigma fa 39.4 17 0.00059 30.8 2.9 48 256-311 187-234 (239)
96 1fse_A GERE; helix-turn-helix 38.9 39 0.0013 23.5 4.3 50 254-312 9-58 (74)
97 3lsg_A Two-component response 38.2 53 0.0018 24.7 5.3 41 261-304 3-43 (103)
98 2q1z_A RPOE, ECF SIGE; ECF sig 37.7 11 0.00039 30.9 1.3 48 256-311 135-182 (184)
99 1je8_A Nitrate/nitrite respons 37.5 33 0.0011 25.3 3.8 48 256-312 21-68 (82)
100 1iuf_A Centromere ABP1 protein 37.4 40 0.0014 27.7 4.7 53 251-306 6-62 (144)
101 3bd1_A CRO protein; transcript 35.2 22 0.00074 25.6 2.4 23 283-305 14-36 (79)
102 2rn7_A IS629 ORFA; helix, all 35.1 61 0.0021 24.6 5.2 51 254-305 4-55 (108)
103 2xi8_A Putative transcription 34.0 20 0.0007 24.1 2.0 22 283-304 17-38 (66)
104 2r1j_L Repressor protein C2; p 34.0 21 0.0007 24.2 2.0 23 283-305 21-43 (68)
105 1p4w_A RCSB; solution structur 33.9 63 0.0022 25.1 5.1 49 254-311 32-80 (99)
106 1zug_A Phage 434 CRO protein; 33.1 21 0.00072 24.5 2.0 23 283-305 19-41 (71)
107 1xsv_A Hypothetical UPF0122 pr 33.0 25 0.00087 27.9 2.7 48 256-311 25-72 (113)
108 2k27_A Paired box protein PAX- 32.5 1.5E+02 0.0051 23.9 7.5 60 254-316 81-147 (159)
109 1xc0_A Pardaxin P-4, PA4; BEND 32.2 24 0.00082 22.4 1.9 23 73-95 5-27 (33)
110 3swk_A Vimentin; cytoskeleton, 31.1 1.8E+02 0.0061 22.3 7.2 48 131-178 20-76 (86)
111 1jko_C HIN recombinase, DNA-in 30.6 74 0.0025 20.0 4.3 41 255-303 4-44 (52)
112 3bs3_A Putative DNA-binding pr 30.2 26 0.00089 24.4 2.1 23 283-305 26-48 (76)
113 1adr_A P22 C2 repressor; trans 30.1 26 0.00088 24.4 2.0 22 283-304 21-42 (76)
114 2jn6_A Protein CGL2762, transp 29.7 70 0.0024 23.9 4.6 45 255-305 4-48 (97)
115 1u78_A TC3 transposase, transp 29.3 79 0.0027 24.5 5.1 54 253-313 57-113 (141)
116 2b5a_A C.BCLI; helix-turn-heli 29.1 28 0.00094 24.4 2.1 22 284-305 27-48 (77)
117 2jpc_A SSRB; DNA binding prote 28.9 44 0.0015 22.6 3.1 29 284-312 17-45 (61)
118 1hlv_A CENP-B, major centromer 28.7 74 0.0025 24.8 4.8 58 250-308 66-130 (131)
119 1r69_A Repressor protein CI; g 28.6 28 0.00097 23.7 2.0 23 283-305 17-39 (69)
120 2wiu_B HTH-type transcriptiona 27.3 39 0.0013 24.3 2.7 22 284-305 29-50 (88)
121 3b7h_A Prophage LP1 protein 11 27.3 31 0.0011 24.1 2.1 22 284-305 24-45 (78)
122 3clo_A Transcriptional regulat 27.3 69 0.0023 28.4 4.8 49 255-312 196-244 (258)
123 1y7y_A C.AHDI; helix-turn-heli 26.3 33 0.0011 23.6 2.1 22 283-304 29-50 (74)
124 3omt_A Uncharacterized protein 26.0 33 0.0011 24.0 2.0 21 284-304 25-45 (73)
125 2a6c_A Helix-turn-helix motif; 26.0 36 0.0012 24.7 2.3 22 284-305 35-56 (83)
126 3t72_q RNA polymerase sigma fa 25.0 54 0.0018 25.6 3.3 53 256-312 19-71 (99)
127 3kz3_A Repressor protein CI; f 24.9 32 0.0011 24.7 1.8 22 284-305 29-50 (80)
128 1rzs_A Antirepressor, regulato 24.6 35 0.0012 23.9 1.9 19 283-301 13-31 (61)
129 2kpj_A SOS-response transcript 23.1 40 0.0014 25.0 2.1 22 284-305 26-47 (94)
130 1l0o_C Sigma factor; bergerat 23.0 18 0.0006 30.7 0.0 46 256-309 198-243 (243)
131 2ef8_A C.ECOT38IS, putative tr 22.4 44 0.0015 23.7 2.1 22 284-305 27-48 (84)
132 2ict_A Antitoxin HIGA; helix-t 22.4 44 0.0015 24.6 2.2 23 283-305 24-46 (94)
133 2k9q_A Uncharacterized protein 22.1 40 0.0014 23.9 1.8 21 284-304 19-39 (77)
134 1b72_A Protein (homeobox prote 21.7 18 0.00062 28.0 -0.2 25 289-313 2-26 (97)
No 1
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.77 E-value=4.1e-19 Score=139.98 Aligned_cols=66 Identities=39% Similarity=0.711 Sum_probs=61.5
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCCC
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 315 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~~~ 315 (336)
++|+|+.|++.++.+|+.||.+|..+|||+..+|..||..|||+..||.+||+|+|+|.|++....
T Consensus 7 ~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 7 GKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHh
Confidence 567788999999999999999999999999999999999999999999999999999999866543
No 2
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=2.8e-18 Score=131.43 Aligned_cols=66 Identities=42% Similarity=0.855 Sum_probs=62.1
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCCC
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 315 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~~~ 315 (336)
.+++++.|++.++.+|+.||..|..+|||+..++..||..|||+..||.+||+|+|+|.|++....
T Consensus 7 ~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 72 (73)
T 1x2n_A 7 GKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPSS 72 (73)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccccc
Confidence 466788999999999999999999999999999999999999999999999999999999987654
No 3
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=3.6e-18 Score=129.59 Aligned_cols=62 Identities=42% Similarity=0.818 Sum_probs=54.2
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCCC
Q 019762 254 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 315 (336)
Q Consensus 254 r~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~~~ 315 (336)
.|+||++++.+|+.||.+|..+|||+..+|..||..|||+..||.+||+|+|+|.|++....
T Consensus 2 ~g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 63 (67)
T 3k2a_A 2 SGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQ 63 (67)
T ss_dssp ----CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC---
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999987653
No 4
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.71 E-value=6.9e-18 Score=135.53 Aligned_cols=59 Identities=37% Similarity=0.651 Sum_probs=56.2
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019762 254 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 312 (336)
Q Consensus 254 r~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~ 312 (336)
..-||++++.+|++||.+|..+||||+++|..||+.|||+..||+|||+|+|+|.|++.
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~ 67 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDM 67 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHH
Confidence 45799999999999999999999999999999999999999999999999999999755
No 5
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=1.2e-17 Score=124.74 Aligned_cols=62 Identities=31% Similarity=0.588 Sum_probs=58.6
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 311 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~ 311 (336)
.+++++.|++.+..+|+.||..|..+|||+..++..||..+||+..||.+||+|+|+|.|++
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 45678899999999999999999999999999999999999999999999999999999874
No 6
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.70 E-value=2.9e-17 Score=125.76 Aligned_cols=64 Identities=31% Similarity=0.604 Sum_probs=60.4
Q ss_pred ccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCC
Q 019762 251 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 314 (336)
Q Consensus 251 krkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~~ 314 (336)
+|+++.|++.++.+|+.||..|..+|||+..++..||..+||+..||.+||+|+|+|.|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 5678899999999999999999999999999999999999999999999999999999987654
No 7
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.69 E-value=3.2e-17 Score=120.85 Aligned_cols=59 Identities=24% Similarity=0.527 Sum_probs=56.4
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019762 253 RAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 311 (336)
Q Consensus 253 kr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~ 311 (336)
|++.|++.+..+|+.||..|..+|||+..++..||..+||+..||.+||+|+|+|.|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 46789999999999999999999999999999999999999999999999999998874
No 8
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.69 E-value=3.8e-17 Score=128.47 Aligned_cols=64 Identities=20% Similarity=0.436 Sum_probs=58.6
Q ss_pred ccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCC
Q 019762 251 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 314 (336)
Q Consensus 251 krkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~~ 314 (336)
.+++..|+..+..+|+.||..|..+|||+..++..||..+||+..||.+||+|+|+|.|+...+
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccC
Confidence 3455569999999999999999999999999999999999999999999999999999997654
No 9
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.67 E-value=5.3e-17 Score=128.05 Aligned_cols=64 Identities=31% Similarity=0.604 Sum_probs=59.6
Q ss_pred ccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCC
Q 019762 251 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 314 (336)
Q Consensus 251 krkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~~ 314 (336)
+|+|+.|++.++.+|+.||..|..+|||+..++..||..+||+..||.+||+|+|+|.|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 5678899999999999999999999999999999999999999999999999999999986644
No 10
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.67 E-value=9.4e-17 Score=127.01 Aligned_cols=61 Identities=23% Similarity=0.516 Sum_probs=57.4
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 310 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk 310 (336)
++++++.|++.++.+|+.||..|+.+|||+..+|..||..+||+..||.+||+|+|+|.|.
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 4566788999999999999999999999999999999999999999999999999999763
No 11
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=3.7e-15 Score=116.43 Aligned_cols=60 Identities=25% Similarity=0.395 Sum_probs=55.8
Q ss_pred cCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCC
Q 019762 252 RRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 314 (336)
Q Consensus 252 rkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~~ 314 (336)
.++++|+++++.+|+.||.. +|||+..++..||..|||+..||.+||+|+|.|.|+....
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~---~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~ 64 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQ---CQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLK 64 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHH
Confidence 46778999999999999999 9999999999999999999999999999999999986543
No 12
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.58 E-value=2.5e-15 Score=110.91 Aligned_cols=57 Identities=18% Similarity=0.352 Sum_probs=48.1
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 309 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~k 309 (336)
++++++.|+..+..+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.|
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp -------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 4566789999999999999999 89999999999999999999999999999999864
No 13
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=4.6e-15 Score=112.69 Aligned_cols=63 Identities=21% Similarity=0.349 Sum_probs=59.0
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCCC
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 315 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~~~ 315 (336)
.+|+|+.|+..+..+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..+++
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 69 (70)
T 2cra_A 7 GRKKRIPYSKGQLRELEREYAA---NKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGPSS 69 (70)
T ss_dssp CCCSCCCSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCTTC
T ss_pred CCCCCCcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCCCC
Confidence 4667889999999999999999 99999999999999999999999999999999999987764
No 14
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=3.7e-15 Score=113.11 Aligned_cols=63 Identities=21% Similarity=0.413 Sum_probs=59.0
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCCC
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 315 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~~~ 315 (336)
.+|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++..+++
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~~~ 69 (70)
T 2dmu_A 7 GRRHRTIFTDEQLEALENLFQE---TKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGPSS 69 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTSTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCCCC
Confidence 4677889999999999999999 99999999999999999999999999999999999987764
No 15
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=4.3e-15 Score=112.86 Aligned_cols=63 Identities=22% Similarity=0.334 Sum_probs=58.9
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCCC
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 315 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~~~ 315 (336)
.+|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..+++
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ss 69 (70)
T 2djn_A 7 GRKPRTIYSSFQLAALQRRFQK---TQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGPSS 69 (70)
T ss_dssp CCCSSCSSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCCCC
Confidence 4667889999999999999988 99999999999999999999999999999999999987764
No 16
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.56 E-value=7.5e-15 Score=111.26 Aligned_cols=63 Identities=21% Similarity=0.410 Sum_probs=58.7
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCCC
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 315 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~~~ 315 (336)
++++|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...+.
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (70)
T 2da2_A 7 GRSSRTRFTDYQLRVLQDFFDA---NAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPSS 69 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccccC
Confidence 4667889999999999999999 99999999999999999999999999999999999977654
No 17
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=5.7e-15 Score=112.17 Aligned_cols=63 Identities=25% Similarity=0.392 Sum_probs=58.8
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCCC
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 315 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~~~ 315 (336)
.+++|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..+++
T Consensus 7 ~~r~R~~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~~s 69 (70)
T 2e1o_A 7 GKGGQVRFSNDQTIELEKKFET---QKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGPSS 69 (70)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCCCC
Confidence 4567889999999999999999 99999999999999999999999999999999999877764
No 18
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.55 E-value=7.8e-15 Score=110.07 Aligned_cols=61 Identities=26% Similarity=0.361 Sum_probs=57.1
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCC
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 313 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~ 313 (336)
++|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAA---NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHhh
Confidence 4677889999999999999999 999999999999999999999999999999999988653
No 19
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=113.52 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=58.9
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCCC
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 315 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~~~ 315 (336)
.+|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..+++
T Consensus 17 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ss 79 (80)
T 2dmt_A 17 GRRSRTVFTELQLMGLEKRFEK---QKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGPSS 79 (80)
T ss_dssp CCCSCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccCCC
Confidence 4567789999999999999999 99999999999999999999999999999999999987764
No 20
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.54 E-value=8.4e-15 Score=108.30 Aligned_cols=59 Identities=29% Similarity=0.384 Sum_probs=53.1
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 311 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~ 311 (336)
++|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNE---NRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKKS 61 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHhhhhccccccC
Confidence 5677889999999999999999 9999999999999999999999999999999998873
No 21
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.54 E-value=8.3e-15 Score=113.44 Aligned_cols=63 Identities=27% Similarity=0.427 Sum_probs=58.8
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCCC
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 315 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~~~ 315 (336)
++|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...+.
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~f~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~s 79 (80)
T 2da3_A 17 DKRLRTTITPEQLEILYQKYLL---DSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGPSS 79 (80)
T ss_dssp CTTCCSSCCTTTHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhccCC
Confidence 4667889999999999999999 89999999999999999999999999999999999977654
No 22
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.53 E-value=9.9e-15 Score=110.58 Aligned_cols=63 Identities=27% Similarity=0.471 Sum_probs=58.3
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCCC
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 315 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~~~ 315 (336)
.+|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++....+
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (70)
T 2da1_A 7 GKRPRTRITDDQLRVLRQYFDI---NNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPSS 69 (70)
T ss_dssp CCSCSCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcccC
Confidence 4667889999999999999999 99999999999999999999999999999999999876543
No 23
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.52 E-value=1.7e-14 Score=105.32 Aligned_cols=57 Identities=16% Similarity=0.258 Sum_probs=54.0
Q ss_pred ccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019762 251 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 310 (336)
Q Consensus 251 krkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk 310 (336)
+|+++.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQ---KQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467789999999999999999 999999999999999999999999999999999875
No 24
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.51 E-value=2e-14 Score=107.04 Aligned_cols=59 Identities=20% Similarity=0.228 Sum_probs=54.7
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 311 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~ 311 (336)
.+|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLF---NKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 4677889999999999999999 9999999999999999999999999999999998874
No 25
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.51 E-value=2.3e-14 Score=105.62 Aligned_cols=57 Identities=19% Similarity=0.319 Sum_probs=53.8
Q ss_pred ccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019762 251 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 310 (336)
Q Consensus 251 krkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk 310 (336)
+|+++.|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK---ENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhc
Confidence 456789999999999999999 999999999999999999999999999999999876
No 26
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.50 E-value=1.8e-14 Score=109.01 Aligned_cols=62 Identities=24% Similarity=0.272 Sum_probs=58.0
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCC
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 314 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~~ 314 (336)
++|+|+.|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~ 63 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKT 63 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCcCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhccc
Confidence 5678889999999999999999 9999999999999999999999999999999999986544
No 27
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=8.5e-15 Score=113.93 Aligned_cols=65 Identities=12% Similarity=0.223 Sum_probs=58.1
Q ss_pred hccCCCCCChhHHHHHHHHHHHc-cCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCC
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSH-AKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 314 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H-~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~~ 314 (336)
++|+|+.|+.++..+|+.||..+ ..+|||+..++..||..+||+..||.+||+|+|.|.++....
T Consensus 8 ~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~~ 73 (80)
T 2da4_A 8 ALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGIE 73 (80)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccCC
Confidence 45677889999999999999994 444999999999999999999999999999999999985543
No 28
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.50 E-value=3.4e-14 Score=105.36 Aligned_cols=58 Identities=21% Similarity=0.297 Sum_probs=51.8
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 310 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk 310 (336)
++|+|+.|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 60 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQK---QKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhh
Confidence 4567889999999999999999 999999999999999999999999999999999887
No 29
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.50 E-value=3.3e-14 Score=106.97 Aligned_cols=60 Identities=22% Similarity=0.340 Sum_probs=56.3
Q ss_pred ccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCC
Q 019762 251 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 313 (336)
Q Consensus 251 krkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~ 313 (336)
+|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRV---NCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 567889999999999999988 999999999999999999999999999999999988654
No 30
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.50 E-value=9.7e-15 Score=113.84 Aligned_cols=61 Identities=23% Similarity=0.336 Sum_probs=56.5
Q ss_pred hhccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019762 249 LRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 312 (336)
Q Consensus 249 ~kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~ 312 (336)
.++|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 17 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 17 KQRRSRTTFSASQLDELERAFER---TQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 35667889999999999999999 99999999999999999999999999999999998754
No 31
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.50 E-value=4.2e-14 Score=109.96 Aligned_cols=62 Identities=16% Similarity=0.303 Sum_probs=57.3
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCC
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 314 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~~ 314 (336)
.+|+|..|+..+..+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+....
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 7 GRRERTTFTRAQLDVLEALFAK---TRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHc
Confidence 4567889999999999999999 9999999999999999999999999999999999986543
No 32
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.49 E-value=4.9e-14 Score=108.04 Aligned_cols=62 Identities=16% Similarity=0.261 Sum_probs=57.4
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCC
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 314 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~~ 314 (336)
.+|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+....
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (73)
T 2l7z_A 7 GRKKRVPYTKVQLKELEREYAT---NKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINK 68 (73)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHH---TSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCCCCHHHHHHHHHHHhh---CCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhcc
Confidence 4567889999999999999999 9999999999999999999999999999999999986543
No 33
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.49 E-value=3.7e-14 Score=103.01 Aligned_cols=57 Identities=18% Similarity=0.276 Sum_probs=53.7
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 309 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~k 309 (336)
++|.+..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQ---QRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 4677889999999999999988 99999999999999999999999999999999865
No 34
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.48 E-value=5.2e-14 Score=106.37 Aligned_cols=62 Identities=18% Similarity=0.265 Sum_probs=57.6
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCC
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 314 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~~ 314 (336)
++|+++.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQ---QKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCccCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhH
Confidence 4677889999999999999999 9999999999999999999999999999999999986543
No 35
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.48 E-value=4.5e-14 Score=110.65 Aligned_cols=62 Identities=21% Similarity=0.268 Sum_probs=57.4
Q ss_pred hccCCCCCChhHHHHHHHHHHH-ccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLS-HAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 311 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~-H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~ 311 (336)
+||+|+.|+.+++..|+.+|.. |+.+|||+..++..||..+||++.||.+||+|+|.+.++.
T Consensus 17 ~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~~ 79 (80)
T 1wh5_A 17 RKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPSS 79 (80)
T ss_dssp SCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSCC
T ss_pred CCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCCC
Confidence 5677889999999999999985 7889999999999999999999999999999999998763
No 36
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=3.8e-14 Score=109.97 Aligned_cols=59 Identities=24% Similarity=0.377 Sum_probs=56.0
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 311 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~ 311 (336)
.+|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (80)
T 2dmq_A 7 GKRMRTSFKHHQLRTMKSYFAI---NHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRN 65 (80)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHH
Confidence 4677889999999999999999 9999999999999999999999999999999999974
No 37
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=106.75 Aligned_cols=61 Identities=21% Similarity=0.354 Sum_probs=56.2
Q ss_pred ccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCC
Q 019762 251 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 314 (336)
Q Consensus 251 krkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~~ 314 (336)
.+.|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+....
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~ 69 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCR---NQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGS 69 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---SSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSS
T ss_pred CCCCccCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhccc
Confidence 345778999999999999999 9999999999999999999999999999999999986543
No 38
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.46 E-value=8.3e-14 Score=102.60 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=50.2
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019762 253 RAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 312 (336)
Q Consensus 253 kr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~ 312 (336)
.|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSR---THYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 3578999999999999999 99999999999999999999999999999999998753
No 39
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.45 E-value=8.8e-14 Score=107.54 Aligned_cols=59 Identities=20% Similarity=0.306 Sum_probs=55.1
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 311 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~ 311 (336)
++|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 9 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~ 67 (77)
T 1nk2_P 9 KRKRRVLFTKAQTYELERRFRQ---QRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 67 (77)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhh
Confidence 4566778999999999999999 9999999999999999999999999999999998863
No 40
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.45 E-value=6.8e-14 Score=105.75 Aligned_cols=60 Identities=23% Similarity=0.339 Sum_probs=56.1
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 312 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~ 312 (336)
.+|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~ 61 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQ---GRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 61 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHh
Confidence 4677889999999999999998 99999999999999999999999999999999998743
No 41
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.45 E-value=2.6e-14 Score=107.97 Aligned_cols=62 Identities=18% Similarity=0.300 Sum_probs=57.3
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCC
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 314 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~~ 314 (336)
++|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++....
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQR---NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTT---CSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 4677889999999999999998 9999999999999999999999999999999999876543
No 42
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.44 E-value=7.9e-14 Score=108.55 Aligned_cols=60 Identities=20% Similarity=0.316 Sum_probs=56.1
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 312 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~ 312 (336)
.+|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (80)
T 2cue_A 7 GQRNRTSFTQEQIEALEKEFER---THYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 66 (80)
T ss_dssp SCCCCCCSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHh
Confidence 4677889999999999999998 99999999999999999999999999999999998743
No 43
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.44 E-value=3e-13 Score=108.43 Aligned_cols=57 Identities=23% Similarity=0.371 Sum_probs=52.8
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCC
Q 019762 255 GKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 314 (336)
Q Consensus 255 ~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~~ 314 (336)
..|+.++...|+.+|.. ++||+..+|..||..+||+..||.+||+|+|.|.++....
T Consensus 16 k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~ 72 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLN---SSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEK 72 (89)
T ss_dssp CCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSC
T ss_pred ccCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHH
Confidence 37999999999999999 9999999999999999999999999999999988775543
No 44
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.44 E-value=1.8e-13 Score=107.02 Aligned_cols=60 Identities=18% Similarity=0.308 Sum_probs=56.3
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 312 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~ 312 (336)
++|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 22 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 22 KQKTRTVFSSTQLCVLNDRFQR---QKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp SCCCSSCCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 4667889999999999999999 99999999999999999999999999999999988754
No 45
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.43 E-value=1.6e-13 Score=106.07 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=55.5
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 311 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~ 311 (336)
.+|+|+.|+..+..+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 13 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 71 (77)
T 1puf_A 13 TRKKRCPYTKHQTLELEKEFLF---NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71 (77)
T ss_dssp TSCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 4567789999999999999999 9999999999999999999999999999999998874
No 46
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.43 E-value=1.7e-13 Score=107.03 Aligned_cols=60 Identities=22% Similarity=0.263 Sum_probs=54.0
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 312 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~ 312 (336)
++|+|+.|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 20 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 20 RRRGRQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCcccCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 4667889999999999999999 99999999999999999999999999999999998854
No 47
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.43 E-value=3.4e-13 Score=103.11 Aligned_cols=63 Identities=22% Similarity=0.377 Sum_probs=57.9
Q ss_pred ccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCCCC
Q 019762 251 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSSS 316 (336)
Q Consensus 251 krkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~~~~ 316 (336)
++.|..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.....+
T Consensus 7 ~~~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~ 69 (74)
T 2ly9_A 7 FGIRAKKTKEQLAELKVSYLK---NQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQC 69 (74)
T ss_dssp CCTTCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCSCC
T ss_pred CCCCcCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcCCC
Confidence 456789999999999999999 999999999999999999999999999999999998665543
No 48
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.43 E-value=2.2e-13 Score=104.02 Aligned_cols=61 Identities=18% Similarity=0.304 Sum_probs=56.4
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCC
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 313 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~ 313 (336)
++|.+..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 9 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 9 KRRNRTTFTSYQLEELEKVFQK---THYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CCSCSCSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 4566778999999999999999 999999999999999999999999999999999988654
No 49
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.43 E-value=1.4e-13 Score=100.29 Aligned_cols=54 Identities=19% Similarity=0.327 Sum_probs=50.1
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019762 255 GKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 311 (336)
Q Consensus 255 ~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~ 311 (336)
+.|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 2 T~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLR---QKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHh---cCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 36899999999999999 9999999999999999999999999999999998863
No 50
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.43 E-value=1.4e-13 Score=105.44 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=55.0
Q ss_pred ccCCCCCChhHHHHHHHHHH-HccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019762 251 KRRAGKLPGDTTSLLKAWWL-SHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 312 (336)
Q Consensus 251 krkr~~lpk~a~~~L~~wf~-~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~ 312 (336)
.++|..|+..+..+|+.+|. . +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~---~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKV---NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHT---TSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 45678999999999999998 6 89999999999999999999999999999999998754
No 51
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=2.7e-13 Score=104.52 Aligned_cols=59 Identities=22% Similarity=0.398 Sum_probs=54.8
Q ss_pred cCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCC
Q 019762 252 RRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 313 (336)
Q Consensus 252 rkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~ 313 (336)
+++..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++...
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQ---NPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCccCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 35567999999999999999 999999999999999999999999999999999998654
No 52
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.42 E-value=1.9e-13 Score=104.28 Aligned_cols=58 Identities=17% Similarity=0.255 Sum_probs=54.1
Q ss_pred cCCCCCChhHHHHHHHHHH-HccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019762 252 RRAGKLPGDTTSLLKAWWL-SHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 312 (336)
Q Consensus 252 rkr~~lpk~a~~~L~~wf~-~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~ 312 (336)
++++.|+..+..+|+.+|. . +|||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKV---NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSS---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 4678899999999999997 5 89999999999999999999999999999999998854
No 53
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.42 E-value=1.3e-13 Score=110.63 Aligned_cols=61 Identities=15% Similarity=0.326 Sum_probs=56.7
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhC---------------CChhhhhhhhhhhhhhccccCC
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETG---------------LQLKQINNWFINQRKRNWHANP 313 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tg---------------Ls~kQV~NWF~N~R~R~kk~~~ 313 (336)
++|.|..|+..+..+|+.||.. +|||+..++..||..+| |+..||.+||+|+|+|.|+...
T Consensus 7 ~rr~R~~ft~~ql~~Le~~F~~---~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 7 GRGSRFTWRKECLAVMESYFNE---NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp CCCCSCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 4567789999999999999999 99999999999999999 9999999999999999997543
No 54
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=6.4e-13 Score=105.83 Aligned_cols=63 Identities=22% Similarity=0.353 Sum_probs=55.9
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCCCCcccc
Q 019762 255 GKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSSSTASK 320 (336)
Q Consensus 255 ~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~~~~~~~~ 320 (336)
.+++..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|+|.++..........
T Consensus 18 k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~~~~~~ 80 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLK---SSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAVLDSMG 80 (89)
T ss_dssp CCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCCCCCCC
T ss_pred ccCCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhhhcccc
Confidence 35899999999999999 9999999999999999999999999999999999887655444333
No 55
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.41 E-value=2e-13 Score=109.48 Aligned_cols=61 Identities=18% Similarity=0.302 Sum_probs=56.7
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCC
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 313 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~ 313 (336)
++|+|+.|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 77 (93)
T 3a01_A 17 RKKPRTSFTRIQVAELEKRFHK---QKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTA 77 (93)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhH
Confidence 4667889999999999999999 999999999999999999999999999999999987543
No 56
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.40 E-value=3.4e-13 Score=106.73 Aligned_cols=60 Identities=22% Similarity=0.248 Sum_probs=54.4
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 312 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~ 312 (336)
.+|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 28 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 28 TKRQRTSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ---CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 5677889999999999999998 99999999999999999999999999999999998753
No 57
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.39 E-value=3.7e-13 Score=117.59 Aligned_cols=62 Identities=23% Similarity=0.309 Sum_probs=54.3
Q ss_pred hhccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCC
Q 019762 249 LRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 313 (336)
Q Consensus 249 ~kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~ 313 (336)
..+|+|+.|+..++.+|+.||.. +|||+..++..||..+||++.||.+||+|+|+|.|+...
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKE---NKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 35677889999999999999999 899999999999999999999999999999999987544
No 58
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.39 E-value=2.9e-13 Score=103.07 Aligned_cols=52 Identities=31% Similarity=0.527 Sum_probs=48.9
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019762 256 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 310 (336)
Q Consensus 256 ~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk 310 (336)
+-++++...|+..|.. +|||+..++..||..|||+..||.+||+|+|.|.|+
T Consensus 10 ~~~~~Ql~~LE~~F~~---~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kk 61 (66)
T 3nau_A 10 KKTKEQIAHLKASFLQ---SQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 61 (66)
T ss_dssp -CCHHHHHHHHHHHHG---GGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhc
Confidence 3478999999999999 999999999999999999999999999999999875
No 59
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.38 E-value=5.2e-13 Score=115.58 Aligned_cols=58 Identities=19% Similarity=0.418 Sum_probs=54.6
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 310 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk 310 (336)
++|+|+.|+..+..+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 93 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 93 KRKRRTSFTPQAIEALNAYFEK---NPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 4556778999999999999999 999999999999999999999999999999999886
No 60
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.37 E-value=9.6e-13 Score=105.91 Aligned_cols=60 Identities=23% Similarity=0.389 Sum_probs=55.2
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 312 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~ 312 (336)
.+|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFVR---TQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCccCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 3466789999999999999999 99999999999999999999999999999999999854
No 61
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.36 E-value=5.5e-13 Score=107.43 Aligned_cols=59 Identities=14% Similarity=0.187 Sum_probs=53.7
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 311 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~ 311 (336)
.+++|+.|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 34 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 92 (97)
T 1b72_A 34 PSGLRTNFTTRQLTELEKEFHF---NKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKR 92 (97)
T ss_dssp ---CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHH
Confidence 5667889999999999999998 9999999999999999999999999999999998874
No 62
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.36 E-value=5.6e-13 Score=104.59 Aligned_cols=61 Identities=13% Similarity=0.223 Sum_probs=54.9
Q ss_pred hccCCCCCChhHHHHHHHHHHHcc--CCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHA--KWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 311 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~--~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~ 311 (336)
++|+|+.|+.+++..|+ -|..|. .+|||+..++..||..+||++.||.+||+|+|.+.++.
T Consensus 17 ~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~s 79 (80)
T 1wh7_A 17 TKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79 (80)
T ss_dssp SSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCCC
T ss_pred CCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCCC
Confidence 56778899999999999 577754 49999999999999999999999999999999998763
No 63
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.35 E-value=7.6e-13 Score=101.68 Aligned_cols=61 Identities=20% Similarity=0.350 Sum_probs=55.0
Q ss_pred cCCCCCChhHHHHHHHHH-HHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCCC
Q 019762 252 RRAGKLPGDTTSLLKAWW-LSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 315 (336)
Q Consensus 252 rkr~~lpk~a~~~L~~wf-~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~~~ 315 (336)
++++.++..+..+|+..| .. ++||+..++..||..+||++.||.+||+|+|.+.|+...+.
T Consensus 10 k~r~r~~~~ql~~LE~~F~~~---~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~~s~ 71 (72)
T 2cqx_A 10 KDSPVNKVEPNDTLEKVFVSV---TKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSGPSS 71 (72)
T ss_dssp CCCCCSCSCSTTHHHHHHHHT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCCCCC
Confidence 455678889999999999 88 99999999999999999999999999999999999876553
No 64
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=1.8e-12 Score=97.50 Aligned_cols=56 Identities=20% Similarity=0.350 Sum_probs=51.8
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019762 253 RAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 311 (336)
Q Consensus 253 kr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~ 311 (336)
.+..+.+++...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 6 ~~~~p~~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 6 SGQPPLKNLLSLLKAYYAL---NAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp SCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCS
T ss_pred CCCCccHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCC
Confidence 3456789999999999988 9999999999999999999999999999999998774
No 65
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.33 E-value=1.8e-12 Score=113.28 Aligned_cols=59 Identities=19% Similarity=0.392 Sum_probs=54.3
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 311 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~ 311 (336)
++|+|+.|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 101 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 101 RRKKRTSIETNIRVALEKSFME---NQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ---CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCcCccccCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 5667889999999999999999 9999999999999999999999999999999999885
No 66
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.32 E-value=2.5e-12 Score=98.56 Aligned_cols=65 Identities=26% Similarity=0.321 Sum_probs=60.0
Q ss_pred hhccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCCC
Q 019762 249 LRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 315 (336)
Q Consensus 249 ~kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~~~ 315 (336)
.+||.|+.|+.+|..+|+..|.. .+|||+.++++.||.+|||++.+|..||+|+|.-.+.+.+++
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~--~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~~~~~~ 70 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHD--VGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHSGPSS 70 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHH--HCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCSSCSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecCCCCCC
Confidence 35778899999999999999987 689999999999999999999999999999999999887764
No 67
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.32 E-value=1.8e-12 Score=114.07 Aligned_cols=62 Identities=18% Similarity=0.448 Sum_probs=52.4
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCC
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 314 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~~ 314 (336)
++|+|+.|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...+
T Consensus 99 ~rr~Rt~ft~~Ql~~LE~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 99 KRKKRTSIEVGVKGALESHFLK---CPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp -------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred CCCCceeccHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 5667889999999999999999 9999999999999999999999999999999999987654
No 68
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.31 E-value=2.7e-12 Score=110.83 Aligned_cols=59 Identities=19% Similarity=0.409 Sum_probs=54.5
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 311 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~ 311 (336)
++|+|+.|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 87 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 87 KRKRRTTISIAAKDALERHFGE---HSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCcCccHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 4566889999999999999999 9999999999999999999999999999999998874
No 69
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.30 E-value=4.2e-12 Score=97.13 Aligned_cols=56 Identities=20% Similarity=0.292 Sum_probs=52.0
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCC
Q 019762 256 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 314 (336)
Q Consensus 256 ~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~~ 314 (336)
.++..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...+
T Consensus 10 ~~t~~ql~~LE~~F~~---~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 10 HMSHTQVIELERKFSH---QKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred cCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 4688999999999999 9999999999999999999999999999999999886543
No 70
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.30 E-value=2.8e-12 Score=97.06 Aligned_cols=54 Identities=20% Similarity=0.397 Sum_probs=49.0
Q ss_pred hhHHHHHHHHH-HHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCCC
Q 019762 259 GDTTSLLKAWW-LSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 315 (336)
Q Consensus 259 k~a~~~L~~wf-~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~~~ 315 (336)
..+...|+..| .. ++||+..++..||+.+||++.||.+||+|+|.+.|+..+++
T Consensus 9 ~~~~~~LE~~F~~~---~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~~~~ 63 (64)
T 1x2m_A 9 AQPNAILEKVFTAI---TKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSGPSS 63 (64)
T ss_dssp SCHHHHHHHHHHTT---CSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSSCCC
T ss_pred chHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCCCC
Confidence 35689999999 45 89999999999999999999999999999999999877765
No 71
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.27 E-value=4.4e-12 Score=103.36 Aligned_cols=63 Identities=24% Similarity=0.351 Sum_probs=52.9
Q ss_pred HhhccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHH------------------hC---CChhhhhhhhhhhhh
Q 019762 248 ILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQE------------------TG---LQLKQINNWFINQRK 306 (336)
Q Consensus 248 ~~kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~------------------tg---Ls~kQV~NWF~N~R~ 306 (336)
.+++|.|..|+..+..+|+.+|.. +|||+..+|..||.. +| |+..||.+||+|+|+
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~---~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~ 83 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 83 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHH
Confidence 345667889999999999999999 999999999999999 77 999999999999999
Q ss_pred hccccCC
Q 019762 307 RNWHANP 313 (336)
Q Consensus 307 R~kk~~~ 313 (336)
+.++...
T Consensus 84 k~k~k~~ 90 (99)
T 1lfb_A 84 EEAFRHK 90 (99)
T ss_dssp TTSCCC-
T ss_pred HHHHhch
Confidence 8876543
No 72
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=8.6e-12 Score=102.40 Aligned_cols=60 Identities=23% Similarity=0.317 Sum_probs=55.2
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHh---------------------CCChhhhhhhhhhhhhhc
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQET---------------------GLQLKQINNWFINQRKRN 308 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~t---------------------gLs~kQV~NWF~N~R~R~ 308 (336)
++|.|..|++.+..+|+.+|.. +|||+..+|..||..+ +|+..+|.+||+|+|+|.
T Consensus 6 ~Rr~Rt~ft~~ql~~Le~~F~~---~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 6 SGRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp SCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 4566788999999999999999 9999999999999999 799999999999999998
Q ss_pred cccC
Q 019762 309 WHAN 312 (336)
Q Consensus 309 kk~~ 312 (336)
++..
T Consensus 83 kr~~ 86 (102)
T 2da6_A 83 AFRQ 86 (102)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8643
No 73
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.22 E-value=5.1e-12 Score=110.01 Aligned_cols=59 Identities=22% Similarity=0.452 Sum_probs=55.0
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 311 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~ 311 (336)
++|+|+.|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 96 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 96 RKRKRTSIENRVRWSLETMFLK---SPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp SCCCCCCCCHHHHHHHHTTTTT---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCcccCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 5667789999999999999987 9999999999999999999999999999999999874
No 74
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.06 E-value=1.1e-10 Score=112.06 Aligned_cols=54 Identities=20% Similarity=0.376 Sum_probs=50.9
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc
Q 019762 253 RAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 309 (336)
Q Consensus 253 kr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~k 309 (336)
.+..|...++..|+..|.. +|||+..+|..||+.|||+++||++||+|+|+|.|
T Consensus 368 ~~~~~~~~q~~~Le~~f~~---~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 368 AAAAISPQARAFLEQVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHCSSCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhcchHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 3467999999999999999 99999999999999999999999999999999975
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.05 E-value=1.6e-10 Score=106.34 Aligned_cols=56 Identities=25% Similarity=0.403 Sum_probs=52.2
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhC---------------------CChhhhhhhhhhhhhhc
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETG---------------------LQLKQINNWFINQRKRN 308 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tg---------------------Ls~kQV~NWF~N~R~R~ 308 (336)
++|.|.+|++.+..+|+.||.. +|||+..+|+.||..|| |+..||.|||+|+|++.
T Consensus 142 ~RR~R~~ft~~ql~~Le~~F~~---~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 142 MRRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 4566778999999999999999 99999999999999998 89999999999999875
No 76
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.03 E-value=1e-10 Score=105.75 Aligned_cols=58 Identities=24% Similarity=0.374 Sum_probs=52.9
Q ss_pred hccCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhC---------------------CChhhhhhhhhhhhhhc
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETG---------------------LQLKQINNWFINQRKRN 308 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tg---------------------Ls~kQV~NWF~N~R~R~ 308 (336)
++|.|..|++.++.+|+.+|.. +|||+..+|..||..+| |+..||.+||+|+|++.
T Consensus 115 ~rr~R~~ft~~ql~~Le~~F~~---~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 115 GRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---HCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 4667789999999999999999 99999999999999999 99999999999999997
Q ss_pred cc
Q 019762 309 WH 310 (336)
Q Consensus 309 kk 310 (336)
+.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 64
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=1.3e-09 Score=83.75 Aligned_cols=48 Identities=21% Similarity=0.439 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc
Q 019762 259 GDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 309 (336)
Q Consensus 259 k~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~k 309 (336)
++++.+|+..|.. +|||+.+++..||..+||+...|..||+|+|.+..
T Consensus 14 k~ql~~Lk~yF~~---n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~~ 61 (71)
T 2da7_A 14 KDHMSVLKAYYAM---NMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQY 61 (71)
T ss_dssp THHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccccc
Confidence 6889999999999 99999999999999999999999999999998543
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=96.52 E-value=0.00034 Score=47.34 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=16.3
Q ss_pred hhhhhhhhhhhhhccccCC
Q 019762 295 KQINNWFINQRKRNWHANP 313 (336)
Q Consensus 295 kQV~NWF~N~R~R~kk~~~ 313 (336)
.||.+||+|+|.|.|+...
T Consensus 1 rQVkIWFQNRRaK~Kk~~~ 19 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVF 19 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHH
T ss_pred CCceeccHHHHHHHHHHhH
Confidence 4899999999999998543
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.09 E-value=0.014 Score=44.57 Aligned_cols=44 Identities=25% Similarity=0.453 Sum_probs=39.6
Q ss_pred CChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 019762 257 LPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFIN 303 (336)
Q Consensus 257 lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N 303 (336)
.++..+++|+++|.. +....+++-..|+.+++|+..||..||.-
T Consensus 13 ~~p~~~e~L~~Yy~~---hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 13 PPPPDIQPLERYWAA---HQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCCCHHHHHHHHH---TCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHH---hcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 355678999999999 77789999999999999999999999974
No 80
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=71.99 E-value=9.4 Score=30.26 Aligned_cols=50 Identities=10% Similarity=0.022 Sum_probs=39.6
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhc
Q 019762 253 RAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRN 308 (336)
Q Consensus 253 kr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~ 308 (336)
+|..|+.+.+..+-.++.. ++.++. ..+|+..|++...|..|..+++...
T Consensus 4 ~r~~~t~e~K~~iv~~~~~---~g~~~~---~~~A~~~gvs~stl~~~~~~~~~~~ 53 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEE---NPDLRK---GEIARRFNIPPSTLSTILKNKRAIL 53 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHH---CTTSCH---HHHHHHHTCCHHHHHHHHHTHHHHH
T ss_pred cceeCCHHHHHHHHHHHHH---CCCCcH---HHHHHHhCCCHHHHHHHHhchhhhc
Confidence 4668999998888777766 566653 3689999999999999988876643
No 81
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=64.01 E-value=11 Score=26.16 Aligned_cols=48 Identities=6% Similarity=0.119 Sum_probs=32.6
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhh
Q 019762 253 RAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQ 304 (336)
Q Consensus 253 kr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~ 304 (336)
++++++.+.+......+.. .++.......+|+..|++..+|.+|....
T Consensus 2 ~r~~ys~efK~~~~~~~~~----g~s~~~~~~~vA~~~gIs~~tl~~W~~~~ 49 (59)
T 2glo_A 2 SRRIFTPHFKLQVLESYRN----DNDCKGNQRATARKYNIHRRQIQKWLQCE 49 (59)
T ss_dssp CCCCCCHHHHHHHHHHHHH----CTTTTTCHHHHHHHTTSCHHHHHHHHTTH
T ss_pred CCCcCCHHHHHHHHHHHHc----CCCcchHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3457888887666555444 22212235689999999999999996543
No 82
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=61.32 E-value=6.5 Score=27.49 Aligned_cols=49 Identities=16% Similarity=0.047 Sum_probs=38.6
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019762 256 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 312 (336)
Q Consensus 256 ~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~ 312 (336)
.||+..+.+|.-.|.. .++ -..+|+..|++...|.++....|++.++..
T Consensus 15 ~L~~~~r~il~l~~~~----g~s----~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 15 DLTTDQREALLLTQLL----GLS----YADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp SSCHHHHHHHHHHHTS----CCC----HHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred hCCHHHHHHHHHHHHc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 5899999998776544 222 257999999999999999999999988754
No 83
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=60.41 E-value=5.7 Score=30.03 Aligned_cols=48 Identities=6% Similarity=0.196 Sum_probs=38.7
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019762 256 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 311 (336)
Q Consensus 256 ~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~ 311 (336)
.||...+.+|.-.|.. .| .-..+|+.+|++...|.++....|++.++.
T Consensus 37 ~L~~~~r~vl~l~~~~----g~----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYR----GW----STAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp TSCHHHHHHHHHHHTS----CC----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 4888999998776554 22 235899999999999999999999998763
No 84
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=53.95 E-value=20 Score=22.52 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=29.2
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhh
Q 019762 255 GKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQ 304 (336)
Q Consensus 255 ~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~ 304 (336)
..++.+.+..+...+.. .+ ....+|+.+|++...|..|....
T Consensus 4 ~~l~~~~~~~i~~~~~~----g~----s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLL----NV----SLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp CCCCHHHHHHHHHHHHT----TC----CHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHhhH
Confidence 46777776555444443 22 24578999999999999998543
No 85
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=53.63 E-value=9.3 Score=30.43 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=37.3
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019762 256 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 311 (336)
Q Consensus 256 ~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~ 311 (336)
.||+..+.++. .+.. .| .-..+|+.+|++...|.++....|++.++.
T Consensus 109 ~L~~~~r~v~~-~~~~----g~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR----GY----SYREIATILSKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp HSCHHHHHHHH-HHTT----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc----CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 37888999988 4333 33 235799999999999999999999998863
No 86
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=53.54 E-value=47 Score=24.74 Aligned_cols=46 Identities=15% Similarity=0.180 Sum_probs=32.1
Q ss_pred cCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhh
Q 019762 252 RRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQR 305 (336)
Q Consensus 252 rkr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R 305 (336)
+++.+++.+.+......+.. .+ -...+|+.+|++...|.+|....+
T Consensus 18 ~~~~~ys~e~k~~~v~~~~~----g~----s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIHD----GE----SKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHHH----TC----CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHC----CC----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34568888886555455543 12 245889999999999999985544
No 87
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=52.95 E-value=13 Score=26.35 Aligned_cols=54 Identities=9% Similarity=0.100 Sum_probs=39.7
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCC
Q 019762 256 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 313 (336)
Q Consensus 256 ~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~ 313 (336)
.||+..+.+|.-.|.-.-...+. -..+|+.+|++...|.++....+++.++...
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~s----~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~ 58 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYT----LEEVGKQFDVTRERIRQIEAKALRKLRHPSR 58 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCC----HHHHHHHHTCCHHHHHHHHHHHHHGGGSCCG
T ss_pred cCCHHHHHHHHHHHccCCCCCCC----HHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 58888988887776210001222 2579999999999999999999999987543
No 88
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=50.63 E-value=14 Score=26.54 Aligned_cols=53 Identities=13% Similarity=-0.024 Sum_probs=39.5
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc-ccC
Q 019762 256 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW-HAN 312 (336)
Q Consensus 256 ~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~k-k~~ 312 (336)
.||+..+.+|.-.|.-.-..++. -..+|+.+|++...|.++....+++.+ ...
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s----~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~ 63 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHT----LEEVGAYFGVTRERIRQIENKALRKLKYHES 63 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCC----HHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHhcccCCCCC----HHHHHHHHCCCHHHHHHHHHHHHHHHHhhHh
Confidence 58999999997776510001221 248999999999999999999999998 543
No 89
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=49.11 E-value=15 Score=27.55 Aligned_cols=53 Identities=11% Similarity=0.067 Sum_probs=39.8
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019762 256 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 312 (336)
Q Consensus 256 ~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~ 312 (336)
.||+..+.+|.-.|.-.-..++ .-..+|..+|++...|.++....+++.++..
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~----s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l 70 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPK----TLEEVGQYFNVTRERIRQIEVKALRKLRHPS 70 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHBTTB
T ss_pred hCCHHHHHHHHHHHccCCCCCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 4889999999777651000122 1357899999999999999999999998754
No 90
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=47.36 E-value=29 Score=26.39 Aligned_cols=50 Identities=12% Similarity=0.088 Sum_probs=40.4
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCC
Q 019762 256 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 314 (336)
Q Consensus 256 ~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~~ 314 (336)
.||+..+.+|.-. .. .+. -..+|+.+|++...|.++..+.+++.+..+..
T Consensus 27 ~Lt~~e~~vl~l~-~~----g~s----~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~ 76 (95)
T 3c57_A 27 GLTDQERTLLGLL-SE----GLT----NKQIADRMFLAEKTVKNYVSRLLAKLGMERRT 76 (95)
T ss_dssp CCCHHHHHHHHHH-HT----TCC----HHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred cCCHHHHHHHHHH-Hc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHH
Confidence 5889999999875 33 222 26899999999999999999999999887654
No 91
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=45.15 E-value=40 Score=25.13 Aligned_cols=49 Identities=10% Similarity=0.119 Sum_probs=38.3
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCC
Q 019762 256 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 313 (336)
Q Consensus 256 ~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~~ 313 (336)
.||+..+.+|.-+ .. .|.. ..+|+.+|++...|.++..+.+++.+..+.
T Consensus 29 ~Lt~~e~~vl~l~-~~----g~s~----~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 77 (91)
T 2rnj_A 29 MLTEREMEILLLI-AK----GYSN----QEIASASHITIKTVKTHVSNILSKLEVQDR 77 (91)
T ss_dssp GCCSHHHHHHHHH-HT----TCCT----THHHHHHTCCHHHHHHHHHHHHHHTTCCSS
T ss_pred cCCHHHHHHHHHH-Hc----CCCH----HHHHHHHCcCHHHHHHHHHHHHHHHCCCCH
Confidence 4888898998764 33 2222 379999999999999999999999887543
No 92
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=41.52 E-value=21 Score=25.48 Aligned_cols=47 Identities=11% Similarity=0.130 Sum_probs=36.4
Q ss_pred CChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019762 257 LPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 312 (336)
Q Consensus 257 lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~ 312 (336)
||+..+.+|.-+ .. .++ -..+|..+|++...|.++....+++.+..+
T Consensus 17 L~~~e~~vl~l~-~~----g~s----~~eIA~~l~is~~tV~~~~~r~~~kl~~~~ 63 (79)
T 1x3u_A 17 LSERERQVLSAV-VA----GLP----NKSIAYDLDISPRTVEVHRANVMAKMKAKS 63 (79)
T ss_dssp HCHHHHHHHHHH-TT----TCC----HHHHHHHTTSCHHHHHHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHH-Hc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 677788888664 22 332 247999999999999999999999988754
No 93
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=41.01 E-value=21 Score=28.49 Aligned_cols=47 Identities=13% Similarity=0.196 Sum_probs=38.4
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019762 256 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 310 (336)
Q Consensus 256 ~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk 310 (336)
.||+..+.++.-.|.. .++ -..+|+.+|++...|.+|....|++.++
T Consensus 22 ~L~~~~r~vl~l~y~~----g~s----~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYAD----DYS----LAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHT----CCC----HHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4899999998876655 222 2589999999999999999999998875
No 94
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=40.67 E-value=16 Score=30.19 Aligned_cols=48 Identities=10% Similarity=0.058 Sum_probs=38.2
Q ss_pred CChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019762 257 LPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 312 (336)
Q Consensus 257 lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~ 312 (336)
||+..+.++.-.+.. .++ -..+|+.+|++...|.++....|++.++..
T Consensus 141 L~~~~r~vl~l~~~~----g~s----~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 141 LPEDLRMAITLRELD----GLS----YEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp SCHHHHHHHHHHHTT----CCC----HHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHc----CCC----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 788888888765544 232 257999999999999999999999988643
No 95
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=39.40 E-value=17 Score=30.82 Aligned_cols=48 Identities=10% Similarity=0.178 Sum_probs=39.4
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019762 256 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 311 (336)
Q Consensus 256 ~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~ 311 (336)
.||+..+.+|.-.|.. .++ -..+|+.+|++...|..+...+|++.++.
T Consensus 187 ~L~~~~r~vl~l~~~~----g~s----~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYE----ELP----AKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp TSCHHHHHHHHHHHTS----CCC----HHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhc----CCC----HHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 5899999999877654 332 25799999999999999999999998763
No 96
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=38.88 E-value=39 Score=23.55 Aligned_cols=50 Identities=10% Similarity=0.050 Sum_probs=39.1
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019762 254 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 312 (336)
Q Consensus 254 r~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~ 312 (336)
...|++....+|.-+ .. .+ .-..+|+.+|++...|..++...+++.+..+
T Consensus 9 ~~~L~~~e~~il~~~-~~----g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 58 (74)
T 1fse_A 9 KPLLTKREREVFELL-VQ----DK----TTKEIASELFISEKTVRNHISNAMQKLGVKG 58 (74)
T ss_dssp CCCCCHHHHHHHHHH-TT----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSS
T ss_pred CCCCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Confidence 457899999998774 22 33 2357999999999999999999998887643
No 97
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=38.17 E-value=53 Score=24.66 Aligned_cols=41 Identities=12% Similarity=-0.011 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhh
Q 019762 261 TTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQ 304 (336)
Q Consensus 261 a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~ 304 (336)
....+..|...|+..|-++.+ .||+.+|+++..++..|.-.
T Consensus 3 ~~~~i~~~i~~~~~~~~~~~~---~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFTLS---VLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCCHH---HHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCHH---HHHHHHCcCHHHHHHHHHHH
Confidence 456677888888877556654 58888888888888777543
No 98
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=37.69 E-value=11 Score=30.94 Aligned_cols=48 Identities=23% Similarity=0.300 Sum_probs=38.7
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019762 256 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 311 (336)
Q Consensus 256 ~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~ 311 (336)
.||+..+.+|.-.+... .+| ..+|+.+|++...|.++....|++.++.
T Consensus 135 ~L~~~~r~vl~l~~~~g--~s~------~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 135 RLPEAQRALIERAFFGD--LTH------RELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp TSCHHHHHHHHHHHHSC--CSS------CCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC--CCH------HHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 38999999997766553 333 2689999999999999999999998763
No 99
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=37.49 E-value=33 Score=25.32 Aligned_cols=48 Identities=8% Similarity=0.042 Sum_probs=37.7
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019762 256 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 312 (336)
Q Consensus 256 ~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~ 312 (336)
.|+...+.+|.-+ .. .+ .-.++|+.+|++...|.++..+.+++.+..+
T Consensus 21 ~Lt~~e~~vl~l~-~~----g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 68 (82)
T 1je8_A 21 QLTPRERDILKLI-AQ----GL----PNKMIARRLDITESTVKVHVKHMLKKMKLKS 68 (82)
T ss_dssp GSCHHHHHHHHHH-TT----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCSS
T ss_pred cCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 4888888888774 22 23 2358999999999999999999999987654
No 100
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=37.36 E-value=40 Score=27.68 Aligned_cols=53 Identities=6% Similarity=0.108 Sum_probs=39.1
Q ss_pred ccCCCCCChhHHHHHHHHH-HHccCCCCCCHHHHHHHHH-Hh--CCChhhhhhhhhhhhh
Q 019762 251 KRRAGKLPGDTTSLLKAWW-LSHAKWPYPTEEDKARLVQ-ET--GLQLKQINNWFINQRK 306 (336)
Q Consensus 251 krkr~~lpk~a~~~L~~wf-~~H~~~PYPs~~eK~~LA~-~t--gLs~kQV~NWF~N~R~ 306 (336)
+++|..|+-+++..+..++ .. +|-.+..+-...|. .. |++...|+.|..|+-.
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~---~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~~ 62 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQL---QNRSGQQDLIEWFREKFGKDISQPSVSQILSSKYS 62 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSS---SSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHHH
Confidence 5678899999999999998 55 67666544333222 67 7899999999977543
No 101
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=35.19 E-value=22 Score=25.61 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.2
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 019762 283 KARLVQETGLQLKQINNWFINQR 305 (336)
Q Consensus 283 K~~LA~~tgLs~kQV~NWF~N~R 305 (336)
...||+.+|++...|+.|..+.+
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 46899999999999999998754
No 102
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=35.12 E-value=61 Score=24.64 Aligned_cols=51 Identities=8% Similarity=0.170 Sum_probs=33.0
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCH-HHHHHHHHHhCCChhhhhhhhhhhh
Q 019762 254 AGKLPGDTTSLLKAWWLSHAKWPYPTE-EDKARLVQETGLQLKQINNWFINQR 305 (336)
Q Consensus 254 r~~lpk~a~~~L~~wf~~H~~~PYPs~-~eK~~LA~~tgLs~kQV~NWF~N~R 305 (336)
+++|+.+.+...-..+..+- .-|++. .....+|...|++..+|.+|..-.+
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~-~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~~ 55 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQ-GEYDSQWATICSIAPKIGCTPETLRVWVRQHE 55 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcc-cccccccccHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45688887654444443310 013332 3567899999999999999976544
No 103
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=34.05 E-value=20 Score=24.11 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=19.2
Q ss_pred HHHHHHHhCCChhhhhhhhhhh
Q 019762 283 KARLVQETGLQLKQINNWFINQ 304 (336)
Q Consensus 283 K~~LA~~tgLs~kQV~NWF~N~ 304 (336)
...||+.+|++...|+.|..+.
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~ 38 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNK 38 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 3579999999999999998764
No 104
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=34.03 E-value=21 Score=24.25 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 019762 283 KARLVQETGLQLKQINNWFINQR 305 (336)
Q Consensus 283 K~~LA~~tgLs~kQV~NWF~N~R 305 (336)
...||+.+|++...|+.|..+.+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 35799999999999999987643
No 105
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=33.90 E-value=63 Score=25.05 Aligned_cols=49 Identities=8% Similarity=0.064 Sum_probs=39.1
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019762 254 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 311 (336)
Q Consensus 254 r~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~ 311 (336)
...||+..+.+|.-++.. .. -.++|+.+|++...|.++..+.+++..-.
T Consensus 32 ~~~Lt~re~~Vl~l~~~G---~s------~~EIA~~L~iS~~TV~~~l~ri~~KLgv~ 80 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEG---FL------VTEIAKKLNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp SSSCCHHHHHHHHHHHHT---CC------HHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred cCCCCHHHHHHHHHHHcC---CC------HHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 467999999999665432 22 26899999999999999999999887654
No 106
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=33.09 E-value=21 Score=24.50 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 019762 283 KARLVQETGLQLKQINNWFINQR 305 (336)
Q Consensus 283 K~~LA~~tgLs~kQV~NWF~N~R 305 (336)
...||+.+|++...|+.|..+.+
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~ 41 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVT 41 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 35799999999999999998754
No 107
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=32.96 E-value=25 Score=27.89 Aligned_cols=48 Identities=8% Similarity=0.124 Sum_probs=38.5
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019762 256 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 311 (336)
Q Consensus 256 ~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~ 311 (336)
.||+..+.++.-.|.. .++ -..+|+.+|++...|.++....|++.++.
T Consensus 25 ~L~~~~r~vl~l~~~~----g~s----~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLE----DYS----LSEIADTFNVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp GSCHHHHHHHHHHHTS----CCC----HHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 4899999998776554 222 25799999999999999999999988753
No 108
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=32.45 E-value=1.5e+02 Score=23.92 Aligned_cols=60 Identities=10% Similarity=0.011 Sum_probs=38.1
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHH-HHHHh------CCChhhhhhhhhhhhhhccccCCCCC
Q 019762 254 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKAR-LVQET------GLQLKQINNWFINQRKRNWHANPSSS 316 (336)
Q Consensus 254 r~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~-LA~~t------gLs~kQV~NWF~N~R~R~kk~~~~~~ 316 (336)
+.+++.+....+..++.+ +|--+..+-.. |.+.. .++...|..|+...+..-.+.-.+.+
T Consensus 81 ~~~~~~~~~~~I~~~~~~---~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~~~~~~~~~~ 147 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQ---NPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSG 147 (159)
T ss_dssp CCCCCTTHHHHHHHHHHH---CSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCCCSCCCCCCC
T ss_pred CCCCCHHHHHHHHHHHHH---CccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhCCCccCcccCC
Confidence 446777788888888877 56556554333 32221 48999999999876665444333333
No 109
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=32.21 E-value=24 Score=22.41 Aligned_cols=23 Identities=39% Similarity=0.535 Sum_probs=17.9
Q ss_pred HHHHHhhCCChHHHHHHHHhhhh
Q 019762 73 CKAEIVGHPLYEQLLSAHVSCLR 95 (336)
Q Consensus 73 lKa~I~sHPlYp~Ll~A~i~C~K 95 (336)
+-.+|++.|||.-||+|--..+.
T Consensus 5 lipkiissplfktllsavgsals 27 (33)
T 1xc0_A 5 LIPKIISSPLFKTLLSAVGSALS 27 (33)
T ss_dssp SHHHHTTTTTHHHHHHHHHHHTT
T ss_pred hhhHHHccHHHHHHHHHHHHHhh
Confidence 34689999999999998655443
No 110
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=31.14 E-value=1.8e+02 Score=22.28 Aligned_cols=48 Identities=27% Similarity=0.346 Sum_probs=34.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH---------HHhhHHHHHHHHHHHHHHHHHhh
Q 019762 131 DKELDQFMTHYVLLLYSFKEQLQQH---------VRVHAMEAVMACWDLEQSLQSLT 178 (336)
Q Consensus 131 dpELDqFMe~Yc~vL~kykeEL~kp---------~~~~~~EA~~fc~~ie~qL~sL~ 178 (336)
.-|+|+.-.+.-+...||.+|+..- +|+.+++|.+.--.+|.++.+|.
T Consensus 20 ~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~ 76 (86)
T 3swk_A 20 EVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4567776677677778888887543 23345677777778899998886
No 111
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=30.63 E-value=74 Score=20.04 Aligned_cols=41 Identities=7% Similarity=0.112 Sum_probs=27.9
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 019762 255 GKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFIN 303 (336)
Q Consensus 255 ~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N 303 (336)
..++.+....+...+.. .. ....+|+.+|++...|..|+..
T Consensus 4 ~~~~~~~~~~i~~l~~~----g~----s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 4 RAINKHEQEQISRLLEK----GH----PRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp CSSCTTHHHHHHHHHHT----TC----CHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCCCHHHHHHHHHHHHc----CC----CHHHHHHHHCCCHHHHHHHHHH
Confidence 35666655555555444 22 2467999999999999999864
No 112
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=30.15 E-value=26 Score=24.41 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 019762 283 KARLVQETGLQLKQINNWFINQR 305 (336)
Q Consensus 283 K~~LA~~tgLs~kQV~NWF~N~R 305 (336)
...||+.+|++...|+.|..+.+
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999987643
No 113
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=30.09 E-value=26 Score=24.38 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.2
Q ss_pred HHHHHHHhCCChhhhhhhhhhh
Q 019762 283 KARLVQETGLQLKQINNWFINQ 304 (336)
Q Consensus 283 K~~LA~~tgLs~kQV~NWF~N~ 304 (336)
...||+.+|++...|+.|..+.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~ 42 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSE 42 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 3579999999999999998764
No 114
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=29.71 E-value=70 Score=23.86 Aligned_cols=45 Identities=11% Similarity=0.204 Sum_probs=30.3
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhh
Q 019762 255 GKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQR 305 (336)
Q Consensus 255 ~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R 305 (336)
++|+.+.+...-..+.... .+ ....+|+.+|++...|.+|....+
T Consensus 4 ~~ys~e~k~~~v~~~~~~~--g~----s~~~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSD--GA----SLQQIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGG--GS----CHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHcC--CC----hHHHHHHHHCcCHHHHHHHHHHHh
Confidence 4688877655544443210 11 256899999999999999976544
No 115
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=29.31 E-value=79 Score=24.53 Aligned_cols=54 Identities=15% Similarity=-0.009 Sum_probs=31.7
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhC--CChhhhhhhhhhhhh-hccccCC
Q 019762 253 RAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETG--LQLKQINNWFINQRK-RNWHANP 313 (336)
Q Consensus 253 kr~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tg--Ls~kQV~NWF~N~R~-R~kk~~~ 313 (336)
++.+++.+....+..+ .. .|.-+. ..|+...| ++...|..|+..... +.+++..
T Consensus 57 r~~~l~~~~~~~i~~~-~~---~~~~s~---~~i~~~lg~~~s~~tV~r~l~~~g~~~~~k~~~ 113 (141)
T 1u78_A 57 RRKALSVRDERNVIRA-AS---NSCKTA---RDIRNELQLSASKRTILNVIKRSGVIVRQKLRP 113 (141)
T ss_dssp CCCSSCHHHHHHHHHH-HH---HCCCCH---HHHHHHTTCCSCHHHHHHHHHHTC---------
T ss_pred CCCcCCHHHHHHHHHH-Hh---CCCCCH---HHHHHHHCCCccHHHHHHHHHHCCCceeeecCC
Confidence 3446788777767666 33 354444 35777778 799999999976655 4444443
No 116
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=29.09 E-value=28 Score=24.35 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=19.0
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019762 284 ARLVQETGLQLKQINNWFINQR 305 (336)
Q Consensus 284 ~~LA~~tgLs~kQV~NWF~N~R 305 (336)
..||+.+|++...|+.|..+.+
T Consensus 27 ~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 27 EELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHCCCHHHHHHHHCCCC
Confidence 5799999999999999987643
No 117
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=28.95 E-value=44 Score=22.56 Aligned_cols=29 Identities=7% Similarity=0.129 Sum_probs=25.7
Q ss_pred HHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019762 284 ARLVQETGLQLKQINNWFINQRKRNWHAN 312 (336)
Q Consensus 284 ~~LA~~tgLs~kQV~NWF~N~R~R~kk~~ 312 (336)
.++|+..|++...|.++..+.+++.+..+
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 45 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQVHK 45 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCCCC
Confidence 48999999999999999999999887644
No 118
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=28.75 E-value=74 Score=24.83 Aligned_cols=58 Identities=24% Similarity=0.313 Sum_probs=40.4
Q ss_pred hccCCCCCChhHHHHHHHHHHHcc--CCCCCCHHHHH----HHHHHhCCChhhh-hhhhhhhhhhc
Q 019762 250 RKRRAGKLPGDTTSLLKAWWLSHA--KWPYPTEEDKA----RLVQETGLQLKQI-NNWFINQRKRN 308 (336)
Q Consensus 250 kkrkr~~lpk~a~~~L~~wf~~H~--~~PYPs~~eK~----~LA~~tgLs~kQV-~NWF~N~R~R~ 308 (336)
+++.+..+..+.-..|..|+.... .-| ||...-. .|+...|++.-.+ ++|+.+-.+|+
T Consensus 66 ~kr~r~~~~~~~E~~L~~Wi~~~~~~g~p-vs~~~I~~kA~~i~~~~g~~~f~~S~gWl~~F~~Rh 130 (131)
T 1hlv_A 66 RKTNKLSPYDKLEGLLIAWFQQIRAAGLP-VKGIILKEKALRIAEELGMDDFTASNGWLDRFRRRR 130 (131)
T ss_dssp CCCCCCCTTHHHHHHHHHHHHHHGGGTCC-CCHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHT
T ss_pred hcccCCCCCHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhc
Confidence 344455677888999999998754 455 7766554 4556677764444 48999988876
No 119
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=28.61 E-value=28 Score=23.65 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 019762 283 KARLVQETGLQLKQINNWFINQR 305 (336)
Q Consensus 283 K~~LA~~tgLs~kQV~NWF~N~R 305 (336)
...||+.+|++...|+.|..+.+
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~ 39 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKT 39 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999987644
No 120
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=27.31 E-value=39 Score=24.25 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.3
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019762 284 ARLVQETGLQLKQINNWFINQR 305 (336)
Q Consensus 284 ~~LA~~tgLs~kQV~NWF~N~R 305 (336)
..||+.+|++...|+.|..+.+
T Consensus 29 ~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 29 SELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHhCCCHHHHHHHHcCCC
Confidence 5799999999999999998743
No 121
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=27.29 E-value=31 Score=24.15 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.5
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019762 284 ARLVQETGLQLKQINNWFINQR 305 (336)
Q Consensus 284 ~~LA~~tgLs~kQV~NWF~N~R 305 (336)
..||+.+|++...|+.|..+.+
T Consensus 24 ~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 24 NRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 5799999999999999998765
No 122
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=27.26 E-value=69 Score=28.41 Aligned_cols=49 Identities=10% Similarity=0.079 Sum_probs=40.3
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019762 255 GKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 312 (336)
Q Consensus 255 ~~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~ 312 (336)
..||+..+.+|.-.+ + .++ -.++|+.+|++...|.+...+.|++.+..+
T Consensus 196 ~~L~~~erevl~L~~-~----G~s----~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~ 244 (258)
T 3clo_A 196 NILSEREKEILRCIR-K----GLS----SKEIAATLYISVNTVNRHRQNILEKLSVGN 244 (258)
T ss_dssp TSSCHHHHHHHHHHH-T----TCC----HHHHHHHHTCCHHHHHHHHHHHHHHTTCSS
T ss_pred ccCCHHHHHHHHHHH-c----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 469999999998763 3 222 257999999999999999999999998764
No 123
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=26.34 E-value=33 Score=23.63 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=19.0
Q ss_pred HHHHHHHhCCChhhhhhhhhhh
Q 019762 283 KARLVQETGLQLKQINNWFINQ 304 (336)
Q Consensus 283 K~~LA~~tgLs~kQV~NWF~N~ 304 (336)
...||+.+|++...|+.|..+.
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~ 50 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQ 50 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 3579999999999999998764
No 124
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=26.00 E-value=33 Score=24.02 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=18.9
Q ss_pred HHHHHHhCCChhhhhhhhhhh
Q 019762 284 ARLVQETGLQLKQINNWFINQ 304 (336)
Q Consensus 284 ~~LA~~tgLs~kQV~NWF~N~ 304 (336)
..||+.+|++...|+.|..+.
T Consensus 25 ~~lA~~~gis~~~is~~e~g~ 45 (73)
T 3omt_A 25 LWLTETLDKNKTTVSKWCTND 45 (73)
T ss_dssp HHHHHHTTCCHHHHHHHHTTS
T ss_pred HHHHHHHCcCHHHHHHHHcCC
Confidence 479999999999999999775
No 125
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=25.95 E-value=36 Score=24.73 Aligned_cols=22 Identities=5% Similarity=0.135 Sum_probs=19.7
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019762 284 ARLVQETGLQLKQINNWFINQR 305 (336)
Q Consensus 284 ~~LA~~tgLs~kQV~NWF~N~R 305 (336)
..||+.+|++...|+.|..+.+
T Consensus 35 ~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 35 FKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 4799999999999999998765
No 126
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=25.04 E-value=54 Score=25.64 Aligned_cols=53 Identities=9% Similarity=0.107 Sum_probs=40.0
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019762 256 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 312 (336)
Q Consensus 256 ~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~kk~~ 312 (336)
.||+..+.++.-.|...-..++ .-..+|..+|++...|.+....++++.++..
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~----s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~ 71 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDY----TLEEVGKQFDVTRERIRQIEAKALRKLRHPS 71 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 4889999998777652100122 2357899999999999999999999988754
No 127
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=24.88 E-value=32 Score=24.69 Aligned_cols=22 Identities=9% Similarity=0.225 Sum_probs=19.1
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019762 284 ARLVQETGLQLKQINNWFINQR 305 (336)
Q Consensus 284 ~~LA~~tgLs~kQV~NWF~N~R 305 (336)
..||+.+|++...|+.|..+.+
T Consensus 29 ~~lA~~~gvs~~~is~~e~g~~ 50 (80)
T 3kz3_A 29 ESVADKMGMGQSAVAALFNGIN 50 (80)
T ss_dssp HHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHhCcCHHHHHHHHcCCC
Confidence 4799999999999999987754
No 128
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=24.61 E-value=35 Score=23.89 Aligned_cols=19 Identities=11% Similarity=0.405 Sum_probs=17.4
Q ss_pred HHHHHHHhCCChhhhhhhh
Q 019762 283 KARLVQETGLQLKQINNWF 301 (336)
Q Consensus 283 K~~LA~~tgLs~kQV~NWF 301 (336)
...||+.+|++..-|+.|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 3579999999999999998
No 129
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=23.12 E-value=40 Score=25.01 Aligned_cols=22 Identities=14% Similarity=0.388 Sum_probs=18.9
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019762 284 ARLVQETGLQLKQINNWFINQR 305 (336)
Q Consensus 284 ~~LA~~tgLs~kQV~NWF~N~R 305 (336)
..||+.+|++...|+.|..+.+
T Consensus 26 ~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 26 LEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp HHHHHHHTCCHHHHHHHHTTSC
T ss_pred HHHHHHHCcCHHHHHHHHhCCC
Confidence 4699999999999999987743
No 130
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=23.00 E-value=18 Score=30.71 Aligned_cols=46 Identities=7% Similarity=0.048 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc
Q 019762 256 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 309 (336)
Q Consensus 256 ~lpk~a~~~L~~wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~NWF~N~R~R~k 309 (336)
.||+..+.+|.-.|... + .-..+|+.+|++...|.+++..+|++.|
T Consensus 198 ~L~~~~r~vl~l~~~~g----~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 198 ELDERERLIVYLRYYKD----Q----TQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp ------------------------------------------------------
T ss_pred hCCHHHHHHHHHHHhcC----C----CHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 47888888887655441 2 2357999999999999999999888764
No 131
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=22.40 E-value=44 Score=23.69 Aligned_cols=22 Identities=23% Similarity=0.157 Sum_probs=19.2
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019762 284 ARLVQETGLQLKQINNWFINQR 305 (336)
Q Consensus 284 ~~LA~~tgLs~kQV~NWF~N~R 305 (336)
..||+.+|++...|+.|..+.+
T Consensus 27 ~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 27 SELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHhCCCHHHHHHHHcCCC
Confidence 5799999999999999987754
No 132
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=22.38 E-value=44 Score=24.64 Aligned_cols=23 Identities=0% Similarity=0.042 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 019762 283 KARLVQETGLQLKQINNWFINQR 305 (336)
Q Consensus 283 K~~LA~~tgLs~kQV~NWF~N~R 305 (336)
...||+.+|++...|+.|..+.+
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999997653
No 133
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=22.07 E-value=40 Score=23.85 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=18.6
Q ss_pred HHHHHHhCCChhhhhhhhhhh
Q 019762 284 ARLVQETGLQLKQINNWFINQ 304 (336)
Q Consensus 284 ~~LA~~tgLs~kQV~NWF~N~ 304 (336)
..||+.+|++...|+.|..+.
T Consensus 19 ~~lA~~~gis~~~i~~~e~g~ 39 (77)
T 2k9q_A 19 KSVAEEMGISRQQLCNIEQSE 39 (77)
T ss_dssp HHHHHHHTSCHHHHHHHHTCC
T ss_pred HHHHHHhCCCHHHHHHHHcCC
Confidence 579999999999999998764
No 134
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=21.73 E-value=18 Score=27.95 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=8.4
Q ss_pred HhCCChhhhhhhhhhhhhhccccCC
Q 019762 289 ETGLQLKQINNWFINQRKRNWHANP 313 (336)
Q Consensus 289 ~tgLs~kQV~NWF~N~R~R~kk~~~ 313 (336)
+.+.+..+|-.||.+.|...+....
T Consensus 2 ~~~~~~~~~~~W~~~~r~~~~~~~~ 26 (97)
T 1b72_A 2 EPNTPTARTFDWMKVKRNPPKTAKV 26 (97)
T ss_dssp ------CCCCGGGGC----------
T ss_pred CCCCCCcccccccccccCCCCCCCC
Confidence 3567778889999999987665443
Done!