Query 019764
Match_columns 336
No_of_seqs 151 out of 222
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 04:21:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019764.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019764hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1561 CCAAT-binding factor, 100.0 4.5E-43 9.7E-48 330.1 14.4 119 98-245 124-250 (307)
2 smart00521 CBF CCAAT-Binding t 100.0 6.9E-37 1.5E-41 233.5 5.7 62 147-237 1-62 (62)
3 PF02045 CBFB_NFYA: CCAAT-bind 100.0 4.5E-34 9.9E-39 215.8 5.1 57 149-234 1-58 (58)
4 COG5224 HAP2 CCAAT-binding fac 99.8 1.4E-20 2.9E-25 173.1 2.9 66 148-244 157-222 (248)
5 PF06203 CCT: CCT motif; Inte 62.9 5.3 0.00011 29.6 1.7 26 213-239 20-45 (45)
6 KOG3088 Secretory carrier memb 25.3 2.5E+02 0.0055 28.3 7.0 35 135-170 42-76 (313)
7 PF08331 DUF1730: Domain of un 24.7 1.1E+02 0.0023 23.8 3.5 26 152-177 41-66 (78)
8 PF15046 DUF4532: Protein of u 21.0 2E+02 0.0044 28.5 5.3 23 147-169 130-152 (279)
9 KOG2796 Uncharacterized conser 18.7 1.3E+02 0.0029 30.6 3.6 33 143-175 278-310 (366)
10 COG2262 HflX GTPases [General 16.1 1.5E+02 0.0033 30.7 3.4 35 156-191 155-189 (411)
No 1
>KOG1561 consensus CCAAT-binding factor, subunit B (HAP2) [Transcription]
Probab=100.00 E-value=4.5e-43 Score=330.09 Aligned_cols=119 Identities=55% Similarity=0.773 Sum_probs=107.9
Q ss_pred hhcccceeecc-CCCCCCccccccc---cCCCCcc--CCCcccCCCC-CCCCCCCCCCC-CceeechhhhHHHHHHHHHH
Q 019764 98 ELVGHSIVLTS-YPYTDPQHVGVIT---PYVPQAM--IPPQLYGMHQ-ARMPLPLEMEE-EPVYVNAKQYRGILRRRQSR 169 (336)
Q Consensus 98 el~ghs~~~~~-~py~dp~~~g~~~---~yg~q~m--~~pq~~g~~~-~R~pLP~~~~e-ePiYVNAKQY~rILrRR~aR 169 (336)
+.+.|...+++ +|+.+|+|.|++. +|++|.+ +.+|+.||.. .|+|||.++.| ||||||||||+||||||++|
T Consensus 124 ~a~~~~~~~~s~~~~~~p~~~g~~~~~~~y~~~~~~~~~~q~~g~~~~~r~pLP~~~~e~ePl~VNaKQY~~IlrRRq~R 203 (307)
T KOG1561|consen 124 TASMSPANNTSGNPITSPHYRGVLDMSGAYSGQPTNTASTQYSGPVPHDRTPLPQTDSETEPLYVNAKQYHRILRRRQAR 203 (307)
T ss_pred ccccccccccccCCCCCCcccceecccccccCCCCccccccccCCCCcCcccCCccccCCCceeEcHHHHHHHHHHHHHH
Confidence 45777777775 7999999999999 8998865 4678899988 99999999866 99999999999999999999
Q ss_pred HHHHHhhhhhhhhhhhhcccccceeecccccccchhhhhcccCCchhhhhhHHhhhcccCCCCccccccccchhhh
Q 019764 170 AKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAA 245 (336)
Q Consensus 170 AK~E~e~k~~k~RK~~~~~~~~~t~~~~~~~~gld~~~~~~kkpYLHESRHkHAmrR~RG~GGRFLt~ke~~~~~~ 245 (336)
||+|+++||||.|| ||||||||+|||||+||+|||||++||..+...
T Consensus 204 aKlEa~~klik~Rk-----------------------------pYLHESRH~HAmkR~RG~GGRFln~k~~~~~ss 250 (307)
T KOG1561|consen 204 AKLEATTKLIKARK-----------------------------PYLHESRHLHAMKRARGEGGRFLNTKEYHDDSS 250 (307)
T ss_pred hhhhhcccchhhcC-----------------------------ccccchhhHHHhhcccCCCCCCCchhhhhhhcc
Confidence 99999999999999 999999999999999999999999999776554
No 2
>smart00521 CBF CCAAT-Binding transcription Factor.
Probab=100.00 E-value=6.9e-37 Score=233.53 Aligned_cols=62 Identities=77% Similarity=1.142 Sum_probs=60.1
Q ss_pred CCCCceeechhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccceeecccccccchhhhhcccCCchhhhhhHHhhhc
Q 019764 147 MEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRR 226 (336)
Q Consensus 147 ~~eePiYVNAKQY~rILrRR~aRAK~E~e~k~~k~RK~~~~~~~~~t~~~~~~~~gld~~~~~~kkpYLHESRHkHAmrR 226 (336)
++++|||||||||++|||||++|||+|+++++++.|| ||||||||+|||+|
T Consensus 1 ~~~~piyVNaKQy~~IlrRR~~Rak~e~~~kl~~~rk-----------------------------pYlhESRH~HAm~R 51 (62)
T smart00521 1 AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERK-----------------------------PYLHESRHLHAMRR 51 (62)
T ss_pred CCCcceeEcHHHHHHHHHHHHHHHHHHHhcchhhccC-----------------------------CcccchhHHHHHcc
Confidence 4789999999999999999999999999999999998 99999999999999
Q ss_pred ccCCCCccccc
Q 019764 227 ARGCGGRFLNT 237 (336)
Q Consensus 227 ~RG~GGRFLt~ 237 (336)
+||+||||||+
T Consensus 52 ~Rg~gGRFl~~ 62 (62)
T smart00521 52 PRGSGGRFLNT 62 (62)
T ss_pred CcCCCCCCCCC
Confidence 99999999986
No 3
>PF02045 CBFB_NFYA: CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B; InterPro: IPR001289 The CCAAT-binding factor (CBFB/NF-YA) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin []. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding []. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The B subunit contains a region of similarity with the yeast protein HAP2 []. For the B subunit it has been suggested that the N-terminal portion of the conserved region is involved in subunit interaction and the C-terminal region involved in DNA-binding [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=4.5e-34 Score=215.76 Aligned_cols=57 Identities=77% Similarity=1.171 Sum_probs=55.8
Q ss_pred CCceeechhhhHHHHHHHHHHHHHHHhhhh-hhhhhhhhcccccceeecccccccchhhhhcccCCchhhhhhHHhhhcc
Q 019764 149 EEPVYVNAKQYRGILRRRQSRAKAELEKKV-IKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRA 227 (336)
Q Consensus 149 eePiYVNAKQY~rILrRR~aRAK~E~e~k~-~k~RK~~~~~~~~~t~~~~~~~~gld~~~~~~kkpYLHESRHkHAmrR~ 227 (336)
|+|||||||||++|||||++|||+|+++++ ++.|| ||||||||+|||+|+
T Consensus 1 ~~piyVNaKQY~rIlrRR~~Rakle~~~k~~~~~rk-----------------------------~YlheSRH~HA~~R~ 51 (58)
T PF02045_consen 1 EEPIYVNAKQYHRILRRRQARAKLEAEGKLSPKKRK-----------------------------PYLHESRHKHAMRRP 51 (58)
T ss_pred CCCeeECHHHHHHHHHHHHHHHHHHHhCCcchhhhH-----------------------------HHHHHHHHHHHHcCc
Confidence 689999999999999999999999999999 99998 999999999999999
Q ss_pred cCCCCcc
Q 019764 228 RGCGGRF 234 (336)
Q Consensus 228 RG~GGRF 234 (336)
||+||||
T Consensus 52 Rg~gGRF 58 (58)
T PF02045_consen 52 RGPGGRF 58 (58)
T ss_pred cCCCCCC
Confidence 9999999
No 4
>COG5224 HAP2 CCAAT-binding factor, subunit B [Transcription]
Probab=99.80 E-value=1.4e-20 Score=173.07 Aligned_cols=66 Identities=42% Similarity=0.540 Sum_probs=58.9
Q ss_pred CCCceeechhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccceeecccccccchhhhhcccCCchhhhhhHHhhhcc
Q 019764 148 EEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRA 227 (336)
Q Consensus 148 ~eePiYVNAKQY~rILrRR~aRAK~E~e~k~~k~RK~~~~~~~~~t~~~~~~~~gld~~~~~~kkpYLHESRHkHAmrR~ 227 (336)
..+|+|||||||++|+|||-+|++++. +|+-.|. .|||||||+|||+|+
T Consensus 157 sfqp~Yvnakq~n~i~kr~~~r~~ld~--~~~~~r~-----------------------------~ylHesrhkham~r~ 205 (248)
T COG5224 157 SFQPDYVNAKQGNEISKRPGLRVYLDD--SVSAGRA-----------------------------FYLHESRHKHAMLRV 205 (248)
T ss_pred ccCcchhhhhhhhHHhcchhHHHHHHH--Hhhhhhh-----------------------------hccccchhhhhhhcc
Confidence 478999999999999999999999886 4555666 799999999999999
Q ss_pred cCCCCccccccccchhh
Q 019764 228 RGCGGRFLNTKKLNDNA 244 (336)
Q Consensus 228 RG~GGRFLt~ke~~~~~ 244 (336)
|+|+||||+++|++...
T Consensus 206 r~ptgrfLtasEi~~ln 222 (248)
T COG5224 206 RDPTGRFLTASEIDPLN 222 (248)
T ss_pred cCCCcceecHHhhhhhh
Confidence 99999999999987654
No 5
>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction. The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding
Probab=62.92 E-value=5.3 Score=29.60 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=22.5
Q ss_pred CchhhhhhHHhhhcccCCCCccccccc
Q 019764 213 PYLHESRHQHAMRRARGCGGRFLNTKK 239 (336)
Q Consensus 213 pYLHESRHkHAmrR~RG~GGRFLt~ke 239 (336)
.-.+++|..=|..|+|-. |||++.+|
T Consensus 20 kirY~~Rk~~A~~R~Rvk-GRFvk~~e 45 (45)
T PF06203_consen 20 KIRYESRKAVADKRPRVK-GRFVKKSE 45 (45)
T ss_pred cCCcchHHHHHhhCCccC-CcccCCCC
Confidence 567899999999999976 99998764
No 6
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.33 E-value=2.5e+02 Score=28.33 Aligned_cols=35 Identities=11% Similarity=0.167 Sum_probs=18.2
Q ss_pred CCCCCCCCCCCCCCCCceeechhhhHHHHHHHHHHH
Q 019764 135 GMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRA 170 (336)
Q Consensus 135 g~~~~R~pLP~~~~eePiYVNAKQY~rILrRR~aRA 170 (336)
...+.++.+|++-. .+.=...+.=+.=|.||++..
T Consensus 42 ~~~~~tv~~P~~~~-~~~a~~~~~kq~eL~~rqeEL 76 (313)
T KOG3088|consen 42 SDQGPTVDIPLDSP-STQAKDLAKKQAELLKKQEEL 76 (313)
T ss_pred CCCCCccccCCCCC-cchhhHHHHHHHHHHHHHHHH
Confidence 33556777777643 233334444445566665443
No 7
>PF08331 DUF1730: Domain of unknown function (DUF1730); InterPro: IPR013542 This domain of unknown function occurs in iron-sulphur cluster-binding proteins together with the 4Fe-4S binding domain (IPR001450 from INTERPRO).
Probab=24.74 E-value=1.1e+02 Score=23.77 Aligned_cols=26 Identities=12% Similarity=0.327 Sum_probs=18.6
Q ss_pred eeechhhhHHHHHHHHHHHHHHHhhh
Q 019764 152 VYVNAKQYRGILRRRQSRAKAELEKK 177 (336)
Q Consensus 152 iYVNAKQY~rILrRR~aRAK~E~e~k 177 (336)
.|.=-.-||.+||.|+.+.-.-++.+
T Consensus 41 rYA~G~DYH~vlk~~L~~l~~~i~~~ 66 (78)
T PF08331_consen 41 RYAWGRDYHKVLKKKLEQLAEWIREL 66 (78)
T ss_pred ehhccCChHHHHHHHHHHHHHHHHHH
Confidence 34445789999999998765555443
No 8
>PF15046 DUF4532: Protein of unknown function (DUF4532)
Probab=20.97 E-value=2e+02 Score=28.54 Aligned_cols=23 Identities=13% Similarity=0.407 Sum_probs=18.1
Q ss_pred CCCCceeechhhhHHHHHHHHHH
Q 019764 147 MEEEPVYVNAKQYRGILRRRQSR 169 (336)
Q Consensus 147 ~~eePiYVNAKQY~rILrRR~aR 169 (336)
+...||||++++=+.++.|=++.
T Consensus 130 I~~~pif~D~~rK~qvI~rt~KE 152 (279)
T PF15046_consen 130 ISCTPIFVDPNRKNQVILRTVKE 152 (279)
T ss_pred hhcccceechhhhhHHHHHHHHH
Confidence 35789999999988888766543
No 9
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=18.75 E-value=1.3e+02 Score=30.56 Aligned_cols=33 Identities=18% Similarity=0.033 Sum_probs=23.1
Q ss_pred CCCCCCCCceeechhhhHHHHHHHHHHHHHHHh
Q 019764 143 LPLEMEEEPVYVNAKQYRGILRRRQSRAKAELE 175 (336)
Q Consensus 143 LP~~~~eePiYVNAKQY~rILrRR~aRAK~E~e 175 (336)
+|.-.+.-|+|||-|-.--+--+|..-|-...+
T Consensus 278 i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e 310 (366)
T KOG2796|consen 278 ILRMDPRNAVANNNKALCLLYLGKLKDALKQLE 310 (366)
T ss_pred ccccCCCchhhhchHHHHHHHHHHHHHHHHHHH
Confidence 444456789999999877777777766644333
No 10
>COG2262 HflX GTPases [General function prediction only]
Probab=16.14 E-value=1.5e+02 Score=30.72 Aligned_cols=35 Identities=34% Similarity=0.338 Sum_probs=25.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhccccc
Q 019764 156 AKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKG 191 (336)
Q Consensus 156 AKQY~rILrRR~aRAK~E~e~k~~k~RK~~~~~~~~ 191 (336)
..+|.|.||+|+.+-+.|+++ +.+.|...|.++++
T Consensus 155 lE~drR~ir~rI~~i~~eLe~-v~~~R~~~R~~R~~ 189 (411)
T COG2262 155 LETDRRRIRRRIAKLKRELEN-VEKAREPRRKKRSR 189 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhcc
Confidence 357999999999999999875 55666655554443
Done!