Query 019764
Match_columns 336
No_of_seqs 151 out of 222
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 06:45:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019764.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019764hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g92_A HAPB protein; transcrip 100.0 1.1E-36 3.6E-41 232.6 4.6 62 149-239 2-64 (64)
2 1b9w_A Protein (merozoite surf 10.8 54 0.0019 26.7 -0.0 20 103-122 69-89 (95)
3 3hde_A Lysozyme; antimicrobial 7.8 1.9E+02 0.0066 24.3 2.2 23 151-173 138-160 (165)
4 1xju_A Lysozyme; secreted inac 7.6 2E+02 0.0069 24.0 2.2 25 151-175 128-152 (163)
5 2anv_A Lysozyme; direct method 6.7 1.5E+02 0.005 24.1 0.9 21 151-172 123-143 (146)
6 1wr7_A NEDD4-2; all-beta, liga 6.5 3.3E+02 0.011 17.8 2.4 23 135-157 1-29 (41)
7 1xjt_A Lysozyme; open conforma 5.9 2.7E+02 0.0093 24.0 2.2 24 151-174 156-179 (191)
8 2k2w_A Recombination and DNA r 5.2 2E+02 0.0067 24.1 0.8 13 149-161 17-29 (118)
9 1ob1_C Major merozoite surface 5.0 2.1E+02 0.0073 23.2 0.9 20 103-122 73-93 (99)
10 3or1_A Sulfite reductase alpha 4.7 1.7E+02 0.0059 28.6 0.2 30 220-250 96-125 (437)
No 1
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=100.00 E-value=1.1e-36 Score=232.63 Aligned_cols=62 Identities=61% Similarity=1.011 Sum_probs=57.7
Q ss_pred CCceeechhhhHHHHHHHHHHHHHHHhhhhh-hhhhhhhcccccceeecccccccchhhhhcccCCchhhhhhHHhhhcc
Q 019764 149 EEPVYVNAKQYRGILRRRQSRAKAELEKKVI-KARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRA 227 (336)
Q Consensus 149 eePiYVNAKQY~rILrRR~aRAK~E~e~k~~-k~RK~~~~~~~~~t~~~~~~~~gld~~~~~~kkpYLHESRHkHAmrR~ 227 (336)
|+|||||||||++|||||++|||+|++++++ +.|| ||||||||+|||+|+
T Consensus 2 eePiyVNaKQy~~IlrRR~~Rakle~~~kl~~~~rk-----------------------------~YlhESRH~HAm~R~ 52 (64)
T 4g92_A 2 ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRK-----------------------------PYLHESRHNHAMRRP 52 (64)
T ss_dssp -CCSCCCTTTHHHHHHHHHHHHHHHHHTTCCSSSCC-----------------------------SCSCHHHHHHHHHSC
T ss_pred CCCeeECHHHHHHHHHHHHHHHHHHHhCCccccccc-----------------------------CcchhHHHHHHhcCC
Confidence 6999999999999999999999999999984 6777 999999999999999
Q ss_pred cCCCCccccccc
Q 019764 228 RGCGGRFLNTKK 239 (336)
Q Consensus 228 RG~GGRFLt~ke 239 (336)
||+||||||++|
T Consensus 53 Rg~gGRFl~~~e 64 (64)
T 4g92_A 53 RGPGGRFLTADE 64 (64)
T ss_dssp BCTTSCBCCCC-
T ss_pred cCCCCccccCCC
Confidence 999999999986
No 2
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria vaccine, surface antigen; 1.80A {Plasmodium cynomolgi} SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Probab=10.81 E-value=54 Score=26.75 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=16.9
Q ss_pred ceeec-cCCCCCCcccccccc
Q 019764 103 SIVLT-SYPYTDPQHVGVITP 122 (336)
Q Consensus 103 s~~~~-~~py~dp~~~g~~~~ 122 (336)
-|+|+ ..||+.|+|.|||-.
T Consensus 69 kIvC~C~~~~~~~~~~gvf~~ 89 (95)
T 1b9w_A 69 EIVCKCTKEGSEPLFEGVFCS 89 (95)
T ss_dssp CEEEECCSTTEEEEGGGTEEE
T ss_pred cEEEECCCCCCCcceeeEEec
Confidence 47887 889999999999864
No 3
>3hde_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase, late protein; 1.95A {Enterobacteria phage P21}
Probab=7.80 E-value=1.9e+02 Score=24.25 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=17.7
Q ss_pred ceeechhhhHHHHHHHHHHHHHH
Q 019764 151 PVYVNAKQYRGILRRRQSRAKAE 173 (336)
Q Consensus 151 PiYVNAKQY~rILrRR~aRAK~E 173 (336)
-+|++-|-..++.+||.+..++=
T Consensus 138 W~~agGk~~~GLv~RR~~E~~l~ 160 (165)
T 3hde_A 138 WTYAGGKQWKGLMTRREIEREIC 160 (165)
T ss_dssp CCEETTEECHHHHHHHHHHHHHH
T ss_pred HhhcCCEEchhHHHHHHHHHHHH
Confidence 45667788999999998765543
No 4
>1xju_A Lysozyme; secreted inactive conformation, hydrolase; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=7.59 E-value=2e+02 Score=23.98 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=18.6
Q ss_pred ceeechhhhHHHHHHHHHHHHHHHh
Q 019764 151 PVYVNAKQYRGILRRRQSRAKAELE 175 (336)
Q Consensus 151 PiYVNAKQY~rILrRR~aRAK~E~e 175 (336)
-+|++-|...++.+||.+.+.+=+.
T Consensus 128 W~~~gGk~~~GL~~RR~~E~~l~~~ 152 (163)
T 1xju_A 128 FVNSNGVPLRGLKIRREKERQLCLT 152 (163)
T ss_dssp CCEETTEECHHHHHHHHHHHHHHHT
T ss_pred HhhcCCEEehhhHHHHHHHHHHHhC
Confidence 4566678899999999877665443
No 5
>2anv_A Lysozyme; direct methods, lanthinide binding sites, hydrolase; 1.04A {Enterobacteria phage P22} PDB: 2anx_A
Probab=6.74 E-value=1.5e+02 Score=24.14 Aligned_cols=21 Identities=14% Similarity=-0.018 Sum_probs=15.7
Q ss_pred ceeechhhhHHHHHHHHHHHHH
Q 019764 151 PVYVNAKQYRGILRRRQSRAKA 172 (336)
Q Consensus 151 PiYVNAKQY~rILrRR~aRAK~ 172 (336)
-+|++-| ..++.+||.+.+.+
T Consensus 123 w~~~~Gk-~~GL~~RR~~E~~l 143 (146)
T 2anv_A 123 WKKAGKD-PDILLPRRRRERAL 143 (146)
T ss_dssp CCCBTTB-TTTTHHHHHHHHHH
T ss_pred HHHcCCe-eHHHHHHHHHHHHH
Confidence 4556667 89999999876554
No 6
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=6.50 E-value=3.3e+02 Score=17.79 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=15.3
Q ss_pred CCCCCCCCCCCC------CCCCceeechh
Q 019764 135 GMHQARMPLPLE------MEEEPVYVNAK 157 (336)
Q Consensus 135 g~~~~R~pLP~~------~~eePiYVNAK 157 (336)
|.+....+||.. ....+.|||..
T Consensus 1 ~~p~~~~~LP~gWe~~~~~~G~~Yy~n~~ 29 (41)
T 1wr7_A 1 GSPGIQSFLPPGWEMRIAPNGRPFFIDHN 29 (41)
T ss_dssp CTTCCCCSSCTTEEEEECTTSCEEEEETT
T ss_pred CCCCccCCCCCCcEEEEcCCCCEEEEECC
Confidence 345566788873 24589999964
No 7
>1xjt_A Lysozyme; open conformation, hydrolase; HET: CIT; 1.75A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=5.89 E-value=2.7e+02 Score=23.97 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=18.1
Q ss_pred ceeechhhhHHHHHHHHHHHHHHH
Q 019764 151 PVYVNAKQYRGILRRRQSRAKAEL 174 (336)
Q Consensus 151 PiYVNAKQY~rILrRR~aRAK~E~ 174 (336)
-+|++-|...++.+||.+.+.+=+
T Consensus 156 W~~~gGk~l~GLv~RR~~E~~l~~ 179 (191)
T 1xjt_A 156 FVNSNGVPLRGLKIRREKERQLCL 179 (191)
T ss_dssp CCEETTEECHHHHHHHHHHHHHHH
T ss_pred HhhcCCEEehhHHHHHHHHHHHHh
Confidence 456667789999999987765544
No 8
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=5.17 E-value=2e+02 Score=24.08 Aligned_cols=13 Identities=38% Similarity=0.659 Sum_probs=10.4
Q ss_pred CCceeechhhhHH
Q 019764 149 EEPVYVNAKQYRG 161 (336)
Q Consensus 149 eePiYVNAKQY~r 161 (336)
.-=||.|+|||.+
T Consensus 17 KtFvFLn~KQ~kk 29 (118)
T 2k2w_A 17 KVFLFLNAKQYKK 29 (118)
T ss_dssp CEEEESCSSTHHH
T ss_pred CEEEEeCHHHHHH
Confidence 3568999999975
No 9
>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Probab=4.98 E-value=2.1e+02 Score=23.16 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=15.6
Q ss_pred ceeec-cCCCCCCcccccccc
Q 019764 103 SIVLT-SYPYTDPQHVGVITP 122 (336)
Q Consensus 103 s~~~~-~~py~dp~~~g~~~~ 122 (336)
-|+|+ .-+|+.|+|.|||-.
T Consensus 73 ki~C~C~~g~~~~~~~gvf~~ 93 (99)
T 1ob1_C 73 KITCECTKPDSYPLFDGIFCS 93 (99)
T ss_dssp CCEEEECSTTCCEEGGGTEEC
T ss_pred ceEeEeCCCCcccceeEEEec
Confidence 36666 558999999999864
No 10
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=4.70 E-value=1.7e+02 Score=28.63 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=22.3
Q ss_pred hHHhhhcccCCCCccccccccchhhhhhhhc
Q 019764 220 HQHAMRRARGCGGRFLNTKKLNDNAANSAEK 250 (336)
Q Consensus 220 HkHAmrR~RG~GGRFLt~ke~~~~~~~~~~~ 250 (336)
|.|+ =|.|-|+|||||++.+..-+.-..+-
T Consensus 96 ~~~t-VRV~~P~Gr~lTaeqLR~LadIAeky 125 (437)
T 3or1_A 96 HFHT-VRLAQPAAKYYTAEYLEAICDVWDLR 125 (437)
T ss_dssp BCCE-EEECCCGGGEEEHHHHHHHHHHHHHH
T ss_pred eEEE-EEEeCCCCCccCHHHHHHHHHHHHHh
Confidence 4454 57899999999999988766544333
Done!