Query 019764
Match_columns 336
No_of_seqs 151 out of 222
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 06:45:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019764.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019764hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ob1c2 g.3.11.4 (C:46-96) Mer 12.6 32 0.0024 23.7 1.0 24 101-124 26-50 (51)
2 d1v8fa_ c.26.1.4 (A:) Pantothe 7.1 52 0.0038 28.1 0.4 29 131-159 23-57 (276)
3 d1ihoa_ c.26.1.4 (A:) Pantothe 5.9 59 0.0043 27.8 0.1 11 150-160 53-63 (282)
4 d2a84a1 c.26.1.4 (A:3-288) Pan 4.9 66 0.0048 27.5 -0.3 12 150-161 62-73 (286)
5 d1xjua_ d.2.1.3 (A:) Endolysin 4.3 2E+02 0.014 21.2 2.2 26 151-176 126-153 (158)
6 d1nf9a_ c.33.1.3 (A:) Phenazin 4.2 52 0.0038 25.7 -1.4 25 217-241 182-206 (207)
7 d1cx4a1 b.82.3.2 (A:130-265) R 3.8 3.4E+02 0.024 18.5 3.0 22 149-170 111-132 (136)
8 d1e0na_ b.72.1.1 (A:) Hypothet 3.7 1.3E+02 0.0097 18.1 0.6 10 149-158 10-19 (27)
9 d1z60a1 g.49.1.2 (A:328-386) T 3.0 1.3E+02 0.0095 20.8 0.0 8 213-220 46-53 (59)
10 d2e2ca_ d.20.1.1 (A:) Ubiquiti 2.9 2.3E+02 0.017 21.3 1.3 22 151-172 133-154 (156)
No 1
>d1ob1c2 g.3.11.4 (C:46-96) Merozoite surface protein 1 (MSP-1) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=12.65 E-value=32 Score=23.68 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=18.8
Q ss_pred ccceeec-cCCCCCCccccccccCC
Q 019764 101 GHSIVLT-SYPYTDPQHVGVITPYV 124 (336)
Q Consensus 101 ghs~~~~-~~py~dp~~~g~~~~yg 124 (336)
+.-|||+ .-|.+.|+|.|||-.|-
T Consensus 26 skkIvC~Ck~p~~~~~~~GVFCS~~ 50 (51)
T d1ob1c2 26 GKKITCECTKPDSYPLFDGIFCSHH 50 (51)
T ss_dssp SCCCEEEECSTTCCEEGGGTEECCC
T ss_pred cceEEEEecCCCCCcccceEEeecc
Confidence 4567886 55888899999998773
No 2
>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Thermus thermophilus [TaxId: 274]}
Probab=7.13 E-value=52 Score=28.07 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=16.0
Q ss_pred CcccCCCCCCCCCCCCC----C--CCceeechhhh
Q 019764 131 PQLYGMHQARMPLPLEM----E--EEPVYVNAKQY 159 (336)
Q Consensus 131 pq~~g~~~~R~pLP~~~----~--eePiYVNAKQY 159 (336)
|+|.+.|.+-+.|--.+ + --.||||+.||
T Consensus 23 PTMGaLH~GHlsLi~~a~~~~~~vvvSIFVNP~QF 57 (276)
T d1v8fa_ 23 PTMGYLHRGHLALVERARRENPFVVVSVFVNPLQF 57 (276)
T ss_dssp EECSSCCHHHHHHHHHHHHHCSEEEEEECCCGGGC
T ss_pred cCCccHhHHHHHHHHHHHHhCCCEEEEEEecCccC
Confidence 45555555544333221 1 24689999994
No 3
>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Escherichia coli [TaxId: 562]}
Probab=5.92 E-value=59 Score=27.82 Aligned_cols=11 Identities=27% Similarity=0.615 Sum_probs=8.7
Q ss_pred CceeechhhhH
Q 019764 150 EPVYVNAKQYR 160 (336)
Q Consensus 150 ePiYVNAKQY~ 160 (336)
-.||||+.||.
T Consensus 53 vSIFVNP~QF~ 63 (282)
T d1ihoa_ 53 VSIFVNPMQFD 63 (282)
T ss_dssp EEECCCGGGCS
T ss_pred EEEEecCccCc
Confidence 36999999864
No 4
>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=4.88 E-value=66 Score=27.50 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=9.3
Q ss_pred CceeechhhhHH
Q 019764 150 EPVYVNAKQYRG 161 (336)
Q Consensus 150 ePiYVNAKQY~r 161 (336)
-.||||+.||.-
T Consensus 62 vSIFVNP~QF~~ 73 (286)
T d2a84a1 62 VSIFVNPMQFGA 73 (286)
T ss_dssp EEECCCCCCTTC
T ss_pred EEEeecccccCc
Confidence 468999999653
No 5
>d1xjua_ d.2.1.3 (A:) Endolysin Lyz {Bacteriophage P1 [TaxId: 10678]}
Probab=4.29 E-value=2e+02 Score=21.16 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=17.7
Q ss_pred ceeech--hhhHHHHHHHHHHHHHHHhh
Q 019764 151 PVYVNA--KQYRGILRRRQSRAKAELEK 176 (336)
Q Consensus 151 PiYVNA--KQY~rILrRR~aRAK~E~e~ 176 (336)
+.|+++ |-..++.+||.+.+++=+++
T Consensus 126 ~~w~~~~g~~~~GL~~RR~~E~~L~l~g 153 (158)
T d1xjua_ 126 PDFVNSNGVPLRGLKIRREKERQLCLTG 153 (158)
T ss_dssp GGCCEETTEECHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCEEChhHHHHHHHHHHHHHcc
Confidence 334444 55789999999877765554
No 6
>d1nf9a_ c.33.1.3 (A:) Phenazine biosynthesis protein PhzD {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.21 E-value=52 Score=25.67 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=21.2
Q ss_pred hhhhHHhhhcccCCCCccccccccc
Q 019764 217 ESRHQHAMRRARGCGGRFLNTKKLN 241 (336)
Q Consensus 217 ESRHkHAmrR~RG~GGRFLt~ke~~ 241 (336)
+..|.+||.+.+..+|+.++++++-
T Consensus 182 ~e~h~~~l~~~~~~~a~V~t~~evL 206 (207)
T d1nf9a_ 182 EAHHRMALEYAASRCAMVVTTDEVL 206 (207)
T ss_dssp HHHHHHHHHHHHHHTCEEECHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEeEHHHhh
Confidence 6689999999888899999888753
No 7
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.75 E-value=3.4e+02 Score=18.50 Aligned_cols=22 Identities=9% Similarity=0.194 Sum_probs=17.8
Q ss_pred CCceeechhhhHHHHHHHHHHH
Q 019764 149 EEPVYVNAKQYRGILRRRQSRA 170 (336)
Q Consensus 149 eePiYVNAKQY~rILrRR~aRA 170 (336)
-.-+.++.+.|.+||++-..+.
T Consensus 111 ~~~~~i~~~~f~~ll~~~~~~~ 132 (136)
T d1cx4a1 111 GALWGLDRVTFRRIIVKNNAKK 132 (136)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHH
T ss_pred EEEEEEeHHHHHHHHHhCHHHH
Confidence 4667889999999999887554
No 8
>d1e0na_ b.72.1.1 (A:) Hypothetical protein Yjq8 (Set2p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.72 E-value=1.3e+02 Score=18.09 Aligned_cols=10 Identities=50% Similarity=0.860 Sum_probs=7.9
Q ss_pred CCceeechhh
Q 019764 149 EEPVYVNAKQ 158 (336)
Q Consensus 149 eePiYVNAKQ 158 (336)
..|+|-||.+
T Consensus 10 grpmyynaq~ 19 (27)
T d1e0na_ 10 GRPLYYNAEQ 19 (27)
T ss_dssp SSEEEEETTT
T ss_pred Cceeeeehhh
Confidence 4799999864
No 9
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.02 E-value=1.3e+02 Score=20.82 Aligned_cols=8 Identities=38% Similarity=0.825 Sum_probs=4.7
Q ss_pred Cchhhhhh
Q 019764 213 PYLHESRH 220 (336)
Q Consensus 213 pYLHESRH 220 (336)
-|+||+-|
T Consensus 46 ~fiHe~lh 53 (59)
T d1z60a1 46 VFVHDSLH 53 (59)
T ss_dssp HTTTTTSC
T ss_pred hhhhhhhc
Confidence 35666655
No 10
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}
Probab=2.86 E-value=2.3e+02 Score=21.29 Aligned_cols=22 Identities=18% Similarity=0.498 Sum_probs=14.7
Q ss_pred ceeechhhhHHHHHHHHHHHHH
Q 019764 151 PVYVNAKQYRGILRRRQSRAKA 172 (336)
Q Consensus 151 PiYVNAKQY~rILrRR~aRAK~ 172 (336)
=+|.|-++|.++.+...++++.
T Consensus 133 ~l~~n~~~y~k~~~e~~~~~~~ 154 (156)
T d2e2ca_ 133 DMWSNQTEYKKVLHEKYKTAQS 154 (156)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHhc
Confidence 3567777888887766655543
Done!