BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019765
         (336 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|190710541|gb|ACE95101.1| mitochondrial alternative oxidase precursor [Citrus sinensis]
          Length = 336

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/336 (99%), Positives = 336/336 (100%)

Query: 1   MMYRGGVRLFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKE 60
           MMYRGGVRLFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKE
Sbjct: 1   MMYRGGVRLFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKE 60

Query: 61  QQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADL 120
           QQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADL
Sbjct: 61  QQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADL 120

Query: 121 SIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH 180
           SIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH
Sbjct: 121 SIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH 180

Query: 181 CKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGY 240
           CKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGY
Sbjct: 181 CKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGY 240

Query: 241 LISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVL 300
           LISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVL
Sbjct: 241 LISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVL 300

Query: 301 VVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           VVRADEAHHRDVNH+ASDIHYQGRQLRESPAPLGYH
Sbjct: 301 VVRADEAHHRDVNHFASDIHYQGRQLRESPAPLGYH 336


>gi|297830954|ref|XP_002883359.1| hypothetical protein ARALYDRAFT_479749 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329199|gb|EFH59618.1| hypothetical protein ARALYDRAFT_479749 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 354

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 262/357 (73%), Positives = 287/357 (80%), Gaps = 25/357 (7%)

Query: 1   MMYRGGV------------RLFSTLTARTASTEAAARILAGQTNRHLSTFL-VRAPILGS 47
           MM RGG             RLFST+  RT S+  A            ST++  RAP +G 
Sbjct: 2   MMTRGGAKAAKSLLTAAKPRLFSTI--RTISSHEALSASHLLKPDVASTWIWTRAPTIGG 59

Query: 48  -RNRSTLALGGEKEQQREENV-------QTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNK 99
            R  ST+ LG EK   +EE+        ++TG  AAGG+ NK EK I SYWGVE  K+ K
Sbjct: 60  MRFASTITLG-EKTPTKEEDANQKKTEKESTGGDAAGGN-NKGEKGIASYWGVEPNKITK 117

Query: 100 DDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC 159
           +DGSEWKWNCFRPWE Y ADL+IDLKKHH PTTF D++A WTVKSLRWPTDLFFQRRYGC
Sbjct: 118 EDGSEWKWNCFRPWETYNADLTIDLKKHHVPTTFLDRLAYWTVKSLRWPTDLFFQRRYGC 177

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
           RAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENERMHLMTFMEVAKPKW
Sbjct: 178 RAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPKW 237

Query: 220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPA 279
           YERALV  VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPA
Sbjct: 238 YERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPA 297

Query: 280 PAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           PAIA DYWRLP ++TL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+L+E+PAP+GYH
Sbjct: 298 PAIAIDYWRLPADATLRDVVIVVRADEAHHRDVNHFASDIHYQGRELKEAPAPIGYH 354


>gi|15228734|ref|NP_188876.1| alternative oxidase 1A [Arabidopsis thaliana]
 gi|3915639|sp|Q39219.2|AOX1A_ARATH RecName: Full=Ubiquinol oxidase 1a, mitochondrial; AltName:
           Full=Alternative oxidase 1a; Flags: Precursor
 gi|13877807|gb|AAK43981.1|AF370166_1 putative alternative oxidase 1a precursor [Arabidopsis thaliana]
 gi|2506083|dbj|BAA22625.1| alternative oxidase [Arabidopsis thaliana]
 gi|9293872|dbj|BAB01775.1| alternative oxidase 1a precursor [Arabidopsis thaliana]
 gi|16323480|gb|AAL15234.1| putative alternative oxidase 1a precursor [Arabidopsis thaliana]
 gi|332643106|gb|AEE76627.1| alternative oxidase 1A [Arabidopsis thaliana]
          Length = 354

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 259/348 (74%), Positives = 291/348 (83%), Gaps = 19/348 (5%)

Query: 1   MMYRGGVRLFSTLTARTASTE---AAARIL-AGQTNRHLSTFLVRAPILGS-RNRSTLAL 55
           ++   G RLFST+  RT S+    +A+ IL  G T+  + T   RAP +G  R  ST+ L
Sbjct: 14  LLVAAGPRLFSTV--RTVSSHEALSASHILKPGVTSAWIWT---RAPTIGGMRFASTITL 68

Query: 56  GGEKEQQREENV-------QTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWN 108
           G EK   +EE+        ++TG  AAGG+ NK +K I SYWGVE  K+ K+DGSEWKWN
Sbjct: 69  G-EKTPMKEEDANQKKTENESTGGDAAGGN-NKGDKGIASYWGVEPNKITKEDGSEWKWN 126

Query: 109 CFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVA 168
           CFRPWE Y+AD++IDLKKHH PTTF D++A WTVKSLRWPTDLFFQRRYGCRAMMLETVA
Sbjct: 127 CFRPWETYKADITIDLKKHHVPTTFLDRIAYWTVKSLRWPTDLFFQRRYGCRAMMLETVA 186

Query: 169 AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
           AVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV  V
Sbjct: 187 AVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVITV 246

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWR 288
           QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA DYWR
Sbjct: 247 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWR 306

Query: 289 LPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           LP ++TL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+L+E+PAP+GYH
Sbjct: 307 LPADATLRDVVMVVRADEAHHRDVNHFASDIHYQGRELKEAPAPIGYH 354


>gi|224118194|ref|XP_002317754.1| predicted protein [Populus trichocarpa]
 gi|222858427|gb|EEE95974.1| predicted protein [Populus trichocarpa]
          Length = 336

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 250/334 (74%), Positives = 275/334 (82%), Gaps = 7/334 (2%)

Query: 8   RLFSTLTARTASTEAAARILAGQTN-----RHLSTFLVRAPILGSRNRSTLALGGEKEQQ 62
           R FST TAR    + A    A   N     R++  F VR  + G R+ ST +  G+ +QQ
Sbjct: 5   RSFSTATARGIVAKEAVPAKAVGFNGDVVRRNIGEFWVRGSVFGLRHGSTASYSGKDQQQ 64

Query: 63  REENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSI 122
             E V+ +   A GG   +++  IVSYWGV   +V K+DG+EWKWNCFRPWE Y ADLSI
Sbjct: 65  --EEVKHSQPVAEGGDKAEEKNAIVSYWGVPPSRVTKEDGTEWKWNCFRPWETYSADLSI 122

Query: 123 DLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCK 182
           +L KHHAP TF DKMA WTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCK
Sbjct: 123 NLTKHHAPVTFLDKMAYWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCK 182

Query: 183 SLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLI 242
           SLRRFEHSGGWIKALLEEAENERMHLMTFMEVA P+WYERALV  VQGVFFNAYFLGYLI
Sbjct: 183 SLRRFEHSGGWIKALLEEAENERMHLMTFMEVANPRWYERALVITVQGVFFNAYFLGYLI 242

Query: 243 SPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVV 302
           SPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI+NVPAPAIA DYWRLPPNSTL+DVV VV
Sbjct: 243 SPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIKNVPAPAIAIDYWRLPPNSTLRDVVEVV 302

Query: 303 RADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           RADEAHHRDVNH+ASDIHYQGR+L+E+PAP+GYH
Sbjct: 303 RADEAHHRDVNHFASDIHYQGRELKEAPAPIGYH 336


>gi|116488305|gb|ABJ98721.1| alternative oxidase [Gossypium hirsutum]
          Length = 331

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 255/344 (74%), Positives = 282/344 (81%), Gaps = 22/344 (6%)

Query: 1   MMYRGGVRL----FSTLTARTASTEAAARILAGQTNRHLSTFLVRAPI--LGSRNRSTLA 54
           MM RG  RL    F+ ++ R  ST A        T   LS  +V+AP   LG R RS++A
Sbjct: 2   MMSRGYTRLASSMFTMVSPRFFSTAA--------TRGVLSNDMVKAPAVGLGVRCRSSMA 53

Query: 55  L--GGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRP 112
              GG+KEQ++++      A   GG   KD+K IVSYWG++  KV+K+DGS WKW CFRP
Sbjct: 54  AIGGGDKEQEKKQ------AVGGGGGSAKDDKEIVSYWGLDPTKVSKEDGSPWKWTCFRP 107

Query: 113 WEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPG 172
           W+ Y ADLSIDLKKHHAP T  DKMA WTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPG
Sbjct: 108 WDTYRADLSIDLKKHHAPVTVLDKMAYWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPG 167

Query: 173 MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVF 232
           MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEV+ P+WYERALVF+VQGVF
Sbjct: 168 MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVSDPRWYERALVFSVQGVF 227

Query: 233 FNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPN 292
           FNAYFLGY+ISPKFAHR+VGYLEEEAIHSYTEFLKELD GNIENVPAP IA DYWRL PN
Sbjct: 228 FNAYFLGYIISPKFAHRVVGYLEEEAIHSYTEFLKELDNGNIENVPAPPIAIDYWRLSPN 287

Query: 293 STLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           STL+DVVL VRADEAHHRDVNH+ASDIHYQGRQL+E+PAPLGYH
Sbjct: 288 STLRDVVLAVRADEAHHRDVNHFASDIHYQGRQLKEAPAPLGYH 331


>gi|155573899|gb|ABU24346.1| mitochondrial alternative oxidase AOX1a [Nicotiana glutinosa]
 gi|155573901|gb|ABU24347.1| mitochondrial alternative oxidase AOX1a [Nicotiana glutinosa]
          Length = 353

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 249/339 (73%), Positives = 280/339 (82%), Gaps = 11/339 (3%)

Query: 6   GVRLFSTLT----ARTASTEAAARILAG----QTNRHLSTFLVRAPILGSRNRSTLALGG 57
           G R FST      ART     AA  + G     + + + T+     ++GSR+ ST+AL G
Sbjct: 18  GPRYFSTAILRNDARTGVMTGAAGFMHGVPANPSEKAVVTWFRHFAVMGSRSASTMALNG 77

Query: 58  EKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYE 117
              +Q ++ V+T  AAA+ G    DEK +VSYWGV   KV K+DG+EWKWNCFRPWE Y+
Sbjct: 78  ---KQHDKKVETGAAAASVGGDGGDEKSVVSYWGVPPSKVTKEDGTEWKWNCFRPWETYK 134

Query: 118 ADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGM 177
           ADLSIDL KHHAPTTF DK A WTVK+LR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGM
Sbjct: 135 ADLSIDLTKHHAPTTFLDKFAYWTVKALRYPTDIFFQRRYGCRAMMLETVAAVPGMVGGM 194

Query: 178 LLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYF 237
           LLHCKSLRRFE SGGWIKALLEEAENERMHLMTFMEVAKP WYERALVFAVQGVFFNAYF
Sbjct: 195 LLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPNWYERALVFAVQGVFFNAYF 254

Query: 238 LGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKD 297
           + YL+SPK AHR+VGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA DYWRLP +STL+D
Sbjct: 255 VTYLLSPKLAHRIVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWRLPKDSTLRD 314

Query: 298 VVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           VVLVVRADEAHHRDVNH+ASDIHYQG+QL++SPAP+GYH
Sbjct: 315 VVLVVRADEAHHRDVNHFASDIHYQGQQLKDSPAPIGYH 353


>gi|312282139|dbj|BAJ33935.1| unnamed protein product [Thellungiella halophila]
          Length = 357

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 256/346 (73%), Positives = 285/346 (82%), Gaps = 12/346 (3%)

Query: 1   MMYRGGVRLFSTLTA--RTASTEA--AARILAGQTNRHLST---FLVRAPILGS-RNRST 52
           +M   G RLFST TA    +S EA  A+R+L    +  +S       RAP  G  R  ST
Sbjct: 14  LMKAAGPRLFSTGTAIRPVSSLEALSASRLLKPPVDSGVSGSAWIWSRAPGFGGVRFAST 73

Query: 53  LALGGEKEQQREENVQTTGAAAAGGS--GNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCF 110
           + LG  ++Q+ E N + T   + GG   GNK EK I SYWGVE  K+ K+DG+EWKWNCF
Sbjct: 74  VTLG--EKQETEANPKKTENESVGGDAGGNKGEKGIDSYWGVEPNKITKEDGTEWKWNCF 131

Query: 111 RPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAV 170
           RPWE Y+ADL+IDL KHH PTTF D++A WTVKSLRWPTD+FFQRRYGCRAMMLETVAAV
Sbjct: 132 RPWETYKADLTIDLSKHHVPTTFLDRLAYWTVKSLRWPTDIFFQRRYGCRAMMLETVAAV 191

Query: 171 PGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQG 230
           PGMVGGMLLHCKSLRRFE SGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV  VQG
Sbjct: 192 PGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVITVQG 251

Query: 231 VFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLP 290
           VFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA DYWRLP
Sbjct: 252 VFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWRLP 311

Query: 291 PNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
            ++TL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+L+E+PAP+GYH
Sbjct: 312 ADATLRDVVMVVRADEAHHRDVNHFASDIHYQGRELKEAPAPIGYH 357


>gi|6634501|emb|CAB64356.1| alternative oxidase [Populus tremula x Populus tremuloides]
          Length = 351

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/335 (73%), Positives = 276/335 (82%), Gaps = 10/335 (2%)

Query: 8   RLFST-----LTARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKEQQ 62
           R FST     + A+ A T  A         +++  F VR  + G R+ ST++ G EK+QQ
Sbjct: 21  RSFSTAISRGIIAKEAVTAKAVECHGDVVRKNIGEFWVRGSVFGVRHGSTMSFG-EKDQQ 79

Query: 63  REENVQTTGAAAAGGSGNKDEKR-IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLS 121
           + E  QT   A  G   +K+EK+ I SYWGV   +V K+DG+EWKWNCFRPWE Y ADLS
Sbjct: 80  KVEMKQTQSVAEGG---DKEEKKEIASYWGVPPSRVTKEDGAEWKWNCFRPWETYSADLS 136

Query: 122 IDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHC 181
           IDLKKHH P TF DKMA W VK+LR+PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHC
Sbjct: 137 IDLKKHHVPATFLDKMAYWMVKALRFPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHC 196

Query: 182 KSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYL 241
           KSLRRFEHSGGWIK LL+EAENERMHLMTFMEVAKP+WYERALV  VQGVF NAYFLGY+
Sbjct: 197 KSLRRFEHSGGWIKTLLDEAENERMHLMTFMEVAKPRWYERALVITVQGVFLNAYFLGYI 256

Query: 242 ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLV 301
           ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA DYWRLPP++TL+DVVLV
Sbjct: 257 ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAVDYWRLPPDATLRDVVLV 316

Query: 302 VRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           VRADEAHHRDVNH+ASDIHYQGR+L+E+PAP+GYH
Sbjct: 317 VRADEAHHRDVNHFASDIHYQGRELKEAPAPIGYH 351


>gi|4006943|emb|CAA10364.1| alternative oxidase [Arabidopsis thaliana]
          Length = 353

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 251/340 (73%), Positives = 279/340 (82%), Gaps = 10/340 (2%)

Query: 5   GGVRLFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILGS-RNRSTLALGGEKEQQR 63
           GG   F       +S EA +R    +     +    RAP +G  R  ST+ LG EK   +
Sbjct: 16  GGWTTFVLDGPYVSSHEALSRSHILKPGVTSAWIWTRAPTIGGMRFASTITLG-EKTPMK 74

Query: 64  EENV-------QTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAY 116
           EE+        ++TG  AAGG+ NK +K I SYWGVE  K+ K+DGSEWKWNCFRPWE Y
Sbjct: 75  EEDANQKKTENESTGGDAAGGN-NKGDKGIASYWGVEPNKITKEDGSEWKWNCFRPWETY 133

Query: 117 EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGG 176
           +AD++IDLKKHH PTTF D++A WTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGG
Sbjct: 134 KADITIDLKKHHVPTTFLDRIAYWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGG 193

Query: 177 MLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAY 236
           MLLHCKSLRRFE SGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV  VQGVFFNAY
Sbjct: 194 MLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVITVQGVFFNAY 253

Query: 237 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLK 296
           FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA DYWRLP ++TL+
Sbjct: 254 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWRLPADATLR 313

Query: 297 DVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           DVV+VVRADEAHHRDVNH+ASDIHYQGR+L+E+PAP+GYH
Sbjct: 314 DVVMVVRADEAHHRDVNHFASDIHYQGRELKEAPAPIGYH 353


>gi|166876|gb|AAA32870.1| oxidase [Arabidopsis thaliana]
          Length = 305

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 244/305 (80%), Positives = 268/305 (87%), Gaps = 10/305 (3%)

Query: 40  VRAPILGS-RNRSTLALGGEKEQQREENV-------QTTGAAAAGGSGNKDEKRIVSYWG 91
            RAP +G  R  ST+ LG EK   +EE+        ++TG  AAGG+ NK +K I SYWG
Sbjct: 3   TRAPTIGGMRFASTITLG-EKTPMKEEDANQKKTENESTGGDAAGGN-NKGDKGIASYWG 60

Query: 92  VEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL 151
           VE  K+ K+DGSEWKWNCFRPWE Y+AD++IDLKKHH PTTF D++A WTVKSLRWPTDL
Sbjct: 61  VEPNKITKEDGSEWKWNCFRPWETYKADITIDLKKHHVPTTFLDRIAYWTVKSLRWPTDL 120

Query: 152 FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTF 211
           FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENERMHLMTF
Sbjct: 121 FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTF 180

Query: 212 MEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDK 271
           MEVAKPKWYERALV  VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDK
Sbjct: 181 MEVAKPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDK 240

Query: 272 GNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPA 331
           GNIENVPAPAIA DYWRLP ++TL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+L+E+PA
Sbjct: 241 GNIENVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHFASDIHYQGRELKEAPA 300

Query: 332 PLGYH 336
           P+GYH
Sbjct: 301 PIGYH 305


>gi|82409049|gb|ABB73306.1| alternative oxidase [Gossypium hirsutum]
          Length = 330

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 252/344 (73%), Positives = 283/344 (82%), Gaps = 22/344 (6%)

Query: 1   MMYRGGVRL----FSTLTARTASTEAAARILAGQTNRHLSTFLVRAPI--LGSRNRSTLA 54
           MM RG  RL    F+ ++ R  ST A   +L+          +V+AP   LG R RS++A
Sbjct: 1   MMSRGYNRLASSMFTMVSPRFFSTAATRGVLSND--------MVKAPAVGLGVRCRSSMA 52

Query: 55  L--GGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRP 112
              GG+KEQ++++ V   G ++        +K IVSYWG++  KV+K+DGS WKW CFRP
Sbjct: 53  AIAGGDKEQEKKQAVGGGGGSSKD------DKEIVSYWGLDPTKVSKEDGSPWKWTCFRP 106

Query: 113 WEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPG 172
           W+ Y+ADLSIDLKKHHAP T  DKMA WTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPG
Sbjct: 107 WDTYQADLSIDLKKHHAPVTVLDKMAYWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPG 166

Query: 173 MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVF 232
           MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEV+ P+WYERALVFAVQGVF
Sbjct: 167 MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVSDPRWYERALVFAVQGVF 226

Query: 233 FNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPN 292
           FNAYFLGY+ISPKFAHR+VGYLEEEAIHSYTEFLKELD GNIENVPAP IA DYWRLPPN
Sbjct: 227 FNAYFLGYIISPKFAHRVVGYLEEEAIHSYTEFLKELDNGNIENVPAPPIAIDYWRLPPN 286

Query: 293 STLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           STL+DVVL VRADEAHHRDVNH+ASDIHYQGRQL+E+PAPLGYH
Sbjct: 287 STLRDVVLAVRADEAHHRDVNHFASDIHYQGRQLKEAPAPLGYH 330


>gi|117646985|dbj|BAF36564.1| alternative oxidase [Nicotiana tabacum]
          Length = 353

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 246/339 (72%), Positives = 279/339 (82%), Gaps = 11/339 (3%)

Query: 6   GVRLFSTLTAR----TASTEAAARILAG----QTNRHLSTFLVRAPILGSRNRSTLALGG 57
           G R FST   R    T     AA  + G     + + + T++   P++GSR+ S++AL  
Sbjct: 18  GPRYFSTAIFRNDAGTGVMSGAAGFMHGVPANPSEKAVVTWVRHFPVMGSRSASSMALND 77

Query: 58  EKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYE 117
           ++  ++ EN     AAA GG    DEK +VSYWGV+  KV K+DG+EWKWNCFRPWE Y+
Sbjct: 78  KQHDKKAEN---GSAAATGGGDGGDEKSVVSYWGVQPSKVTKEDGTEWKWNCFRPWETYK 134

Query: 118 ADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGM 177
           ADLSIDL KHHAPTTF DK A WTVKSLR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGM
Sbjct: 135 ADLSIDLTKHHAPTTFLDKFAYWTVKSLRYPTDIFFQRRYGCRAMMLETVAAVPGMVGGM 194

Query: 178 LLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYF 237
           LLHCKSLRRFE SGGWIK LL+EAENERMHLMTFMEVAKP WYERALVFAVQGVFFNAYF
Sbjct: 195 LLHCKSLRRFEQSGGWIKTLLDEAENERMHLMTFMEVAKPNWYERALVFAVQGVFFNAYF 254

Query: 238 LGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKD 297
           + YL+SPK AHR+VGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA DYWRLP +STL+D
Sbjct: 255 VTYLLSPKLAHRIVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWRLPKDSTLRD 314

Query: 298 VVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           VVLVVRADEAHHRDVNH+ASDIHYQG+QL++SPAP+GYH
Sbjct: 315 VVLVVRADEAHHRDVNHFASDIHYQGQQLKDSPAPIGYH 353


>gi|1872517|gb|AAB49302.1| alternative oxidase, partial [Arabidopsis thaliana]
          Length = 287

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 236/287 (82%), Positives = 258/287 (89%), Gaps = 8/287 (2%)

Query: 57  GEKEQQREENV-------QTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNC 109
           GEK   +EE+        ++TG  AAGG+ NK +K I SYWGVE  K+ K+DGSEWKWNC
Sbjct: 2   GEKTPMKEEDANQKKTENESTGGDAAGGN-NKGDKGIASYWGVEPNKITKEDGSEWKWNC 60

Query: 110 FRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAA 169
           FRPWE Y+AD++IDLKKHH PTTF D++A WTVKSLRWPTDLFFQRRYGCRAMMLETVAA
Sbjct: 61  FRPWETYKADITIDLKKHHVPTTFLDRIAYWTVKSLRWPTDLFFQRRYGCRAMMLETVAA 120

Query: 170 VPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQ 229
           VPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV  VQ
Sbjct: 121 VPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVITVQ 180

Query: 230 GVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRL 289
           GVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA DYWRL
Sbjct: 181 GVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWRL 240

Query: 290 PPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           P ++TL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+L+E+PAP+GYH
Sbjct: 241 PADATLRDVVMVVRADEAHHRDVNHFASDIHYQGRELKEAPAPIGYH 287


>gi|357484585|ref|XP_003612580.1| Alternative oxidase [Medicago truncatula]
 gi|355513915|gb|AES95538.1| Alternative oxidase [Medicago truncatula]
          Length = 330

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 239/300 (79%), Positives = 261/300 (87%), Gaps = 3/300 (1%)

Query: 38  FLVRAPILGSRNRSTLALGGEKEQQREENVQTTGAAAAGGSG-NKDEKRIVSYWGVEAPK 96
           +LVR+  L  R  ST       +Q+  +NV  T  ++ GG+G NKDEK I SYWGV+  K
Sbjct: 33  YLVRSTPL-VRKTSTFT-ANLSDQKDNKNVDKTPPSSQGGAGDNKDEKGITSYWGVQPSK 90

Query: 97  VNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRR 156
           + K DG+EWKWNCFRPWE Y+AD++IDL KHH PTTF DKMA WTVKSLRWPTD+FFQRR
Sbjct: 91  ITKPDGTEWKWNCFRPWETYKADVTIDLTKHHKPTTFLDKMAYWTVKSLRWPTDIFFQRR 150

Query: 157 YGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAK 216
           YGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENERMHLMTFMEVAK
Sbjct: 151 YGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAK 210

Query: 217 PKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIEN 276
           PKWYERALV  VQGVFFNAYFLGYL+SPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIEN
Sbjct: 211 PKWYERALVITVQGVFFNAYFLGYLLSPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIEN 270

Query: 277 VPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           VPAPAIA DYW+LP NSTL+DVV VVRADEAHHRDVNH+ASDIHYQGR+LRE+ AP+GYH
Sbjct: 271 VPAPAIAIDYWQLPQNSTLRDVVEVVRADEAHHRDVNHFASDIHYQGRELREAAAPIGYH 330


>gi|40036979|gb|AAR37364.1| mitochondrial alternative oxidase [Nicotiana attenuata]
          Length = 349

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 247/335 (73%), Positives = 276/335 (82%), Gaps = 7/335 (2%)

Query: 6   GVRLFSTLTAR----TASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKEQ 61
           G R FST   R    T     AA  + G         L   P++GSR+ ST+AL    ++
Sbjct: 18  GPRYFSTAILRNDAGTGVMTGAAGFMHGVPVNPSEKVLWHIPVMGSRSASTMAL---NDK 74

Query: 62  QREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLS 121
           Q ++ V+  G AA+GG    DEK +VSYWGV   KV K+DG+EWKWNCFRPWE Y+ADL+
Sbjct: 75  QHDKKVENGGTAASGGGDGGDEKSVVSYWGVPPSKVTKEDGTEWKWNCFRPWETYKADLT 134

Query: 122 IDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHC 181
           IDL KHHAPTTF DK A WTVK+LR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHC
Sbjct: 135 IDLTKHHAPTTFLDKFAYWTVKALRYPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHC 194

Query: 182 KSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYL 241
           KSLRRFE SGGWIKALLEEAENERMHLMTFMEVAKP WYERALVFAVQGVFFNAYF+ YL
Sbjct: 195 KSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPNWYERALVFAVQGVFFNAYFVTYL 254

Query: 242 ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLV 301
           +SPK AHR+VGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA DYWRLP +STL+DVVLV
Sbjct: 255 VSPKLAHRIVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWRLPKDSTLRDVVLV 314

Query: 302 VRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           VRADEAHHRDVNH+ASDIHYQG+QL++SPAP+GYH
Sbjct: 315 VRADEAHHRDVNHFASDIHYQGQQLKDSPAPIGYH 349


>gi|226897263|dbj|BAH56640.1| alternative oxidase 1b [Nelumbo nucifera]
          Length = 348

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 243/336 (72%), Positives = 270/336 (80%), Gaps = 12/336 (3%)

Query: 8   RLFST-LTARTASTEAAARILAGQTN------RHLSTFLVRAPILGSRNRSTLALGGEKE 60
           RLFST  T+R  ++E    +L G T+         S   +R P+LG RN ST ALGG+  
Sbjct: 18  RLFSTATTSRLVTSEP---LLTGTTSFLYAAAARTSVASIRLPVLGVRNGSTGALGGD-- 72

Query: 61  QQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADL 120
           +Q    +QT        S +   K IVSYWG+   KV K+DG+ W+WN FRPWE Y+ADL
Sbjct: 73  EQTRNGLQTDSTGGTSDSPSDKPKPIVSYWGLVPSKVTKEDGTVWRWNSFRPWETYQADL 132

Query: 121 SIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH 180
           SIDLKKHH P  F DKMA WTVK+LR+PTDLFFQRRYGCRAMMLETVAAVPGMV GMLLH
Sbjct: 133 SIDLKKHHEPNKFLDKMAYWTVKTLRYPTDLFFQRRYGCRAMMLETVAAVPGMVAGMLLH 192

Query: 181 CKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGY 240
           CKSLRRFEHSGGWIKALLEEAENERMHLMTFMEV++PKWYERALVF VQG+FFNAYFL Y
Sbjct: 193 CKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVSQPKWYERALVFTVQGIFFNAYFLAY 252

Query: 241 LISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVL 300
           LISPK AHR VGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA DYW LPP+STL+DVVL
Sbjct: 253 LISPKLAHRAVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWHLPPDSTLRDVVL 312

Query: 301 VVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
            VRADEAHHRDVNH+ASDIH+QG++LRE PAPLGYH
Sbjct: 313 AVRADEAHHRDVNHFASDIHFQGQELREIPAPLGYH 348


>gi|70799007|gb|AAZ09196.1| mitochondrial alternative oxidase 1 [Vigna unguiculata]
 gi|70799009|gb|AAZ09197.1| mitochondrial alternative oxidase 1 [Vigna unguiculata]
          Length = 316

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 238/291 (81%), Positives = 257/291 (88%), Gaps = 10/291 (3%)

Query: 46  GSRNRSTLALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEW 105
           G R+ STL L  EKE+  ++          G  GNK++K IVSYWGVE  K+ K DG+EW
Sbjct: 36  GVRSESTLVLP-EKEKMEKK---------VGDGGNKEQKGIVSYWGVEPSKITKLDGTEW 85

Query: 106 KWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLE 165
           KWNCFRPWE Y+AD+SIDL KHHAPTTF DKMALWTVK+LR+PTDLFFQRRYGCRAMMLE
Sbjct: 86  KWNCFRPWETYKADVSIDLNKHHAPTTFLDKMALWTVKTLRYPTDLFFQRRYGCRAMMLE 145

Query: 166 TVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV 225
           TVAAVPGMV GMLLH KSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV
Sbjct: 146 TVAAVPGMVAGMLLHLKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV 205

Query: 226 FAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATD 285
             VQGVFFNAYFLGY+ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA D
Sbjct: 206 ITVQGVFFNAYFLGYMISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAID 265

Query: 286 YWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           YW+LPP+STLKDVV VVRADEAHHRDVNH+ASDIHYQGR+LRE+ AP+GYH
Sbjct: 266 YWQLPPDSTLKDVVTVVRADEAHHRDVNHFASDIHYQGRELREAAAPIGYH 316


>gi|3023316|sp|Q41224.1|AOX1_TOBAC RecName: Full=Ubiquinol oxidase 1, mitochondrial; AltName:
           Full=Alternative oxidase 1; Flags: Precursor
 gi|558054|gb|AAC60576.1| alternative oxidase [Nicotiana tabacum]
 gi|1090812|prf||2019465A Aox1 gene
          Length = 353

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 244/339 (71%), Positives = 276/339 (81%), Gaps = 11/339 (3%)

Query: 6   GVRLFSTLTAR----TASTEAAARILAG----QTNRHLSTFLVRAPILGSRNRSTLALGG 57
           G R FST   R    T     AA  + G     + + + T++   P++GSR+  ++AL  
Sbjct: 18  GPRYFSTAIFRNDAGTGVMSGAAVFMHGVPANPSEKAVVTWVRHFPVMGSRSAMSMALND 77

Query: 58  EKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYE 117
           ++  ++ EN     AAA GG    DEK +VSYWGV+  KV K+DG+EWKWNCFRPWE Y+
Sbjct: 78  KQHDKKAEN---GSAAATGGGDGGDEKSVVSYWGVQPSKVTKEDGTEWKWNCFRPWETYK 134

Query: 118 ADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGM 177
           ADLSIDL KHHAPTTF DK A WTVKSLR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGM
Sbjct: 135 ADLSIDLTKHHAPTTFLDKFAYWTVKSLRYPTDIFFQRRYGCRAMMLETVAAVPGMVGGM 194

Query: 178 LLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYF 237
           LLHCKSLRRFE SGGWIK LL+EAENERMHLMTFMEVAKP WYERALVFAVQGVFFNAYF
Sbjct: 195 LLHCKSLRRFEQSGGWIKTLLDEAENERMHLMTFMEVAKPNWYERALVFAVQGVFFNAYF 254

Query: 238 LGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKD 297
           + YL+SPK AHR+VGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA DY RLP +STL D
Sbjct: 255 VTYLLSPKLAHRIVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYCRLPKDSTLLD 314

Query: 298 VVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           VVLVVRADEAHHRDVNH+ASDIHYQG+QL++SPAP+GYH
Sbjct: 315 VVLVVRADEAHHRDVNHFASDIHYQGQQLKDSPAPIGYH 353


>gi|327554104|gb|AEB00555.1| mitochondrial alternative oxidase 1a [Brassica juncea]
          Length = 360

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 248/360 (68%), Positives = 273/360 (75%), Gaps = 24/360 (6%)

Query: 1   MMYRGGV------------RLFSTLTARTAST---------EAAARILAGQTNRHLSTFL 39
           MM RGG             RLFST T  T  +           A   LA  +      + 
Sbjct: 1   MMSRGGAKVASSLLKAARPRLFSTATTSTIRSISHETSHLLRPAVADLASPSGMSGWIWT 60

Query: 40  VRAPILGSRNRSTLALGGEKEQQREEN---VQTTGAAAAGGSGNKDEKRIVSYWGVEAPK 96
            RAP +G    ++    GEK    + N    +   +      GNK  K I SYWGVE  K
Sbjct: 61  TRAPAMGGVRFASTVTLGEKTTTTDANPKKAENESSTGGDAGGNKGGKGIASYWGVEPSK 120

Query: 97  VNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRR 156
           + K+DG+EWKWNCFRPWE Y+ADL+IDL KHH PTTF D++A WTVKSLRWPTDLFFQRR
Sbjct: 121 ITKEDGTEWKWNCFRPWETYKADLTIDLSKHHVPTTFLDRLAYWTVKSLRWPTDLFFQRR 180

Query: 157 YGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAK 216
           YGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENERMHLMTFMEVAK
Sbjct: 181 YGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAK 240

Query: 217 PKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIEN 276
           PKWYERALV  VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIEN
Sbjct: 241 PKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIEN 300

Query: 277 VPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           VPAPAIA DYWRLP ++TL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+L+E+PAP+GYH
Sbjct: 301 VPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHFASDIHYQGRELKEAPAPIGYH 360


>gi|351720843|ref|NP_001236166.1| ubiquinol oxidase 1, mitochondrial [Glycine max]
 gi|3334449|sp|Q07185.1|AOX1_SOYBN RecName: Full=Ubiquinol oxidase 1, mitochondrial; AltName:
           Full=Alternative oxidase 1; Flags: Precursor
 gi|395216|emb|CAA48653.1| alternative oxidase [Glycine max]
 gi|740229|prf||2004454A respiratory chain terminal oxidase
          Length = 321

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 231/291 (79%), Positives = 255/291 (87%), Gaps = 7/291 (2%)

Query: 46  GSRNRSTLALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEW 105
           G R+ STLAL      ++E+  +  G ++AGG  NK+EK IVSYWG++  K+ K DG+EW
Sbjct: 38  GVRSESTLAL-----SEKEKIEKKVGLSSAGG--NKEEKVIVSYWGIQPSKITKKDGTEW 90

Query: 106 KWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLE 165
           KWNCF PW  Y+ADLSIDL+KH  PTTF DKMA WTVK LR+PTD+FFQRRYGCRAMMLE
Sbjct: 91  KWNCFSPWGTYKADLSIDLEKHMPPTTFLDKMAFWTVKVLRYPTDVFFQRRYGCRAMMLE 150

Query: 166 TVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV 225
           TVAAVPGMV GMLLHCKSLRRFEHSGGW KALLEEAENERMHLMTFMEVAKPKWYERALV
Sbjct: 151 TVAAVPGMVAGMLLHCKSLRRFEHSGGWFKALLEEAENERMHLMTFMEVAKPKWYERALV 210

Query: 226 FAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATD 285
             VQGVFFNAYFLGYL+SPKFAHRM GYLEEEAIHSYTEFLKELDKGNIENVPAPAIA D
Sbjct: 211 ITVQGVFFNAYFLGYLLSPKFAHRMFGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAID 270

Query: 286 YWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           YW+LPP STL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+LRE+ AP+GYH
Sbjct: 271 YWQLPPGSTLRDVVMVVRADEAHHRDVNHFASDIHYQGRELREAAAPIGYH 321


>gi|224135251|ref|XP_002322021.1| predicted protein [Populus trichocarpa]
 gi|222869017|gb|EEF06148.1| predicted protein [Populus trichocarpa]
          Length = 281

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 231/281 (82%), Positives = 250/281 (88%), Gaps = 4/281 (1%)

Query: 57  GEKEQQREENVQTTGAAAAGGSGNKDEKR-IVSYWGVEAPKVNKDDGSEWKWNCFRPWEA 115
           GEK+QQ+ E  QT   A  G   +K+EK+ I SYWGV   +V K+DG+EWKWNCFRPWE 
Sbjct: 4   GEKDQQKVEMKQTQPVAEGG---DKEEKKEIASYWGVPPSRVTKEDGAEWKWNCFRPWET 60

Query: 116 YEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVG 175
           Y ADLSIDLKKHH P T  DKMA W VK+LR PTDLFFQRRYGCRAMMLETVAAVPGMVG
Sbjct: 61  YSADLSIDLKKHHVPATVLDKMAFWIVKALRLPTDLFFQRRYGCRAMMLETVAAVPGMVG 120

Query: 176 GMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNA 235
           GMLLHCKSLRRFEHSGGWIK LL+EAENERMHLMTFMEVAKP+WYERALV  VQGVF NA
Sbjct: 121 GMLLHCKSLRRFEHSGGWIKTLLDEAENERMHLMTFMEVAKPRWYERALVITVQGVFLNA 180

Query: 236 YFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTL 295
           YFLGY+ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA DYWRLPPN+TL
Sbjct: 181 YFLGYIISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAVDYWRLPPNATL 240

Query: 296 KDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           +DVVLVVRADEAHHRDVNH+ASDIHYQGR+L+E+PAP+GYH
Sbjct: 241 RDVVLVVRADEAHHRDVNHFASDIHYQGRELKEAPAPIGYH 281


>gi|15228729|ref|NP_188875.1| alternative oxidase 1B [Arabidopsis thaliana]
 gi|3913143|sp|O23913.1|AOX1B_ARATH RecName: Full=Ubiquinol oxidase 1b, mitochondrial; AltName:
           Full=Alternative oxidase 1b; Flags: Precursor
 gi|2506082|dbj|BAA22624.1| alternative oxidase [Arabidopsis thaliana]
 gi|9293871|dbj|BAB01774.1| alternative oxidase 1b precursor [Arabidopsis thaliana]
 gi|67633654|gb|AAY78751.1| mitochondrial alternative oxidase 1b [Arabidopsis thaliana]
 gi|332643105|gb|AEE76626.1| alternative oxidase 1B [Arabidopsis thaliana]
          Length = 325

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 232/302 (76%), Positives = 259/302 (85%), Gaps = 4/302 (1%)

Query: 35  LSTFLVRAPILGSRNRSTLALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEA 94
           L T  +R P +G   R    +  EK++  EE   + G A     GNK E+ IVSYWGV+ 
Sbjct: 28  LVTENIRVPAMGVV-RVFSKMTFEKKKTTEEKGSSGGKA---DQGNKGEQLIVSYWGVKP 83

Query: 95  PKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQ 154
            K+ K+DG+EWKW+CFRPWE Y++DL+IDLKKHH P+T  DK+A WTVKSLRWPTDLFFQ
Sbjct: 84  MKITKEDGTEWKWSCFRPWETYKSDLTIDLKKHHVPSTLPDKLAYWTVKSLRWPTDLFFQ 143

Query: 155 RRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEV 214
           RRYGCRAMMLETVAAVPGMVGGML+HCKSLRRFE SGGWIKALLEEAENERMHLMTFMEV
Sbjct: 144 RRYGCRAMMLETVAAVPGMVGGMLVHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEV 203

Query: 215 AKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI 274
           AKP WYERALV AVQG+FFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELD GNI
Sbjct: 204 AKPNWYERALVIAVQGIFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDNGNI 263

Query: 275 ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLG 334
           ENVPAPAIA DYWRL  ++TL+DVV+VVRADEAHHRDVNHYASDIHYQGR+L+E+PAP+G
Sbjct: 264 ENVPAPAIAIDYWRLEADATLRDVVMVVRADEAHHRDVNHYASDIHYQGRELKEAPAPIG 323

Query: 335 YH 336
           YH
Sbjct: 324 YH 325


>gi|40036985|gb|AAR37365.1| mitochondrial alternative oxidase [Nicotiana attenuata]
          Length = 353

 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 247/339 (72%), Positives = 281/339 (82%), Gaps = 11/339 (3%)

Query: 6   GVRLFSTLTAR----TASTEAAARILAG----QTNRHLSTFLVRAPILGSRNRSTLALGG 57
           G R FST   R    T     AA  + G     + + L T++   P++GSR+ ST+AL  
Sbjct: 18  GPRYFSTAILRNDAGTGVMTGAAGFMHGVPVNPSEKALVTWVRHIPVMGSRSASTMAL-- 75

Query: 58  EKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYE 117
             ++Q ++ V+  G AA+GG    DEK +VSYWGV   KV K+DG+EWKWNCFRPWE Y+
Sbjct: 76  -NDKQHDKKVENGGTAASGGGDGGDEKSVVSYWGVPPSKVTKEDGTEWKWNCFRPWETYK 134

Query: 118 ADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGM 177
           ADL+IDL KHHAPTTF DK A WTVK+LR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGM
Sbjct: 135 ADLTIDLTKHHAPTTFLDKFAYWTVKALRYPTDIFFQRRYGCRAMMLETVAAVPGMVGGM 194

Query: 178 LLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYF 237
           LLHCKSLRRFE SGGWIKALLEEAENERMHLMTFMEVAKP WYERALVFAVQGVFFNAYF
Sbjct: 195 LLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPNWYERALVFAVQGVFFNAYF 254

Query: 238 LGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKD 297
           + YL+SPK AHR+VGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA DYWRLP +STL+D
Sbjct: 255 VTYLVSPKLAHRIVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWRLPKDSTLRD 314

Query: 298 VVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           VV+VVRADEAHHRDVNH+ASDIHYQG+QL++SPAP+GYH
Sbjct: 315 VVVVVRADEAHHRDVNHFASDIHYQGQQLKDSPAPIGYH 353


>gi|3599419|gb|AAC35354.1| alternative oxidase precursor [Glycine max]
          Length = 321

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 231/291 (79%), Positives = 255/291 (87%), Gaps = 7/291 (2%)

Query: 46  GSRNRSTLALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEW 105
           G R+ STLAL      ++E+  +  G ++AGG  NK+EK IVSYWG++  K+ K DG+EW
Sbjct: 38  GVRSESTLAL-----SEKEKIEKKVGLSSAGG--NKEEKVIVSYWGIQPSKITKKDGTEW 90

Query: 106 KWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLE 165
           KWNCFR W  Y+ADLSIDL+KH  PTTF DKMA WTVK LR+PTD+FFQRRYGCRAMMLE
Sbjct: 91  KWNCFRAWGTYKADLSIDLEKHMPPTTFLDKMAFWTVKVLRYPTDVFFQRRYGCRAMMLE 150

Query: 166 TVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV 225
           TVAAVPGMV GM LHCKSLRRFEHSGGW KALLEEAENERMHLMTFMEVAKPKWYERALV
Sbjct: 151 TVAAVPGMVAGMQLHCKSLRRFEHSGGWFKALLEEAENERMHLMTFMEVAKPKWYERALV 210

Query: 226 FAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATD 285
             VQGVFFNAYFLGYL+SPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA D
Sbjct: 211 ITVQGVFFNAYFLGYLLSPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAID 270

Query: 286 YWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           YW+LPP STL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+LRE+ AP+GYH
Sbjct: 271 YWQLPPGSTLRDVVMVVRADEAHHRDVNHFASDIHYQGRELREAAAPIGYH 321


>gi|350539075|ref|NP_001234117.1| alternative oxidase 1a [Solanum lycopersicum]
 gi|29465622|gb|AAK58482.1| alternative oxidase 1a [Solanum lycopersicum]
          Length = 358

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 235/298 (78%), Positives = 254/298 (85%), Gaps = 11/298 (3%)

Query: 45  LGSRNRSTLALGGEKEQQRE------ENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVN 98
           +GSR+ ST AL  +K+Q++E      EN  T  AA  GG G    K +VSYWGV   K  
Sbjct: 66  MGSRSASTAALN-DKQQEKESSDKKVENTATATAAVNGGVG----KSVVSYWGVPPSKAT 120

Query: 99  KDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYG 158
           K DG+EWKWNCFRPWE YEAD+SIDL KHHAP TF DK A WTVK LR+PTD+FFQRRYG
Sbjct: 121 KPDGTEWKWNCFRPWETYEADMSIDLTKHHAPVTFLDKFAYWTVKILRFPTDVFFQRRYG 180

Query: 159 CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 218
           CRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENERMHLMTFMEVAKP 
Sbjct: 181 CRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPN 240

Query: 219 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVP 278
            YERALVFAVQGVFFNAYF  YLISPK AHR+VGYLEEEA+HSYTEFLKELD GNIENVP
Sbjct: 241 VYERALVFAVQGVFFNAYFAAYLISPKLAHRIVGYLEEEAVHSYTEFLKELDNGNIENVP 300

Query: 279 APAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           APAIA DYWRLP ++TL+DVVLVVRADEAHHRDVNHYASDIHYQG+QL++SPAPLGYH
Sbjct: 301 APAIAIDYWRLPKDATLRDVVLVVRADEAHHRDVNHYASDIHYQGQQLKDSPAPLGYH 358


>gi|3913066|sp|Q40578.2|AOX2_TOBAC RecName: Full=Ubiquinol oxidase 2, mitochondrial; AltName:
           Full=Alternative oxidase 2; Flags: Precursor
          Length = 297

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 235/294 (79%), Positives = 262/294 (89%), Gaps = 3/294 (1%)

Query: 43  PILGSRNRSTLALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDG 102
           P++G R+ ST+AL    ++Q ++ V+  GAAA+GG    DEK +VSYWGV   KV K+DG
Sbjct: 7   PVMGPRSASTVALN---DKQHDKKVENGGAAASGGGDGGDEKSVVSYWGVPPSKVTKEDG 63

Query: 103 SEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAM 162
           +EWKWNCFRPWE Y+ADLSIDL KHHAPTTF DK A WTVK+LR+PTD+FFQRRYGCRAM
Sbjct: 64  TEWKWNCFRPWETYKADLSIDLTKHHAPTTFLDKFAYWTVKALRYPTDIFFQRRYGCRAM 123

Query: 163 MLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYER 222
           MLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENERMHLMTFMEVAKP WYER
Sbjct: 124 MLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPNWYER 183

Query: 223 ALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAI 282
           ALVFAVQGVF NAYF+ YL+SPK AHR+VGYLEEEAIHSYTEFLKELDKGNIENVPAPAI
Sbjct: 184 ALVFAVQGVFINAYFVTYLLSPKLAHRIVGYLEEEAIHSYTEFLKELDKGNIENVPAPAI 243

Query: 283 ATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           A DYWRLP +STL+DVVLVVRADEAHHRDVNH+A DIHYQG+QL++SPAP+GYH
Sbjct: 244 AIDYWRLPKDSTLRDVVLVVRADEAHHRDVNHFAPDIHYQGQQLKDSPAPIGYH 297


>gi|308153040|dbj|BAJ22109.1| alternative oxidase 1b [Arum maculatum]
          Length = 346

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 235/323 (72%), Positives = 258/323 (79%), Gaps = 4/323 (1%)

Query: 14  TARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKEQQREENVQTTGAA 73
           TA  AS+    R  A Q  R     L R P   S  R    L    +   +E   T G  
Sbjct: 28  TADAASSALLHRCSAAQAQR---AGLCRPPSWFSPPRRASTLSDPAQDGGKEKAGTAGEV 84

Query: 74  AAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTF 133
             G  G  ++K + SYWGV   ++ K+DGS W+W CFRPWE YE DLSIDLKKHHAPTTF
Sbjct: 85  PPG-EGGAEQKAVASYWGVPPSRMTKEDGSPWRWTCFRPWETYEPDLSIDLKKHHAPTTF 143

Query: 134 SDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW 193
            DKMALWTVKSLRWPTD+FFQRRYGCRAMMLETVAAVPGMVGG+LLH KSLRRFEHSGGW
Sbjct: 144 LDKMALWTVKSLRWPTDIFFQRRYGCRAMMLETVAAVPGMVGGLLLHLKSLRRFEHSGGW 203

Query: 194 IKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGY 253
           IK LLEEAENERMHLMTFMEV++P+WYERALV AVQGVFFNAYFLGYLISPKFAHR+VGY
Sbjct: 204 IKTLLEEAENERMHLMTFMEVSQPRWYERALVLAVQGVFFNAYFLGYLISPKFAHRVVGY 263

Query: 254 LEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVN 313
           LEEEAIHSYTEFLKE+DKG IENVPAPAIA DYWRLPP STL+DVV+VVRADEAHHRDVN
Sbjct: 264 LEEEAIHSYTEFLKEIDKGTIENVPAPAIALDYWRLPPGSTLRDVVMVVRADEAHHRDVN 323

Query: 314 HYASDIHYQGRQLRESPAPLGYH 336
           H+ASD+HYQG QL+ +PAPLGYH
Sbjct: 324 HFASDVHYQGHQLKAAPAPLGYH 346


>gi|400530644|gb|AFP86473.1| mitochondrial alternative oxidase [Brassica rapa subsp. chinensis]
          Length = 427

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 245/357 (68%), Positives = 270/357 (75%), Gaps = 24/357 (6%)

Query: 1   MMYRGGV------------RLFSTLTARTAST---------EAAARILAGQTNRHLSTFL 39
           MM RGG             RLFST T  T  +           A   LA  +      + 
Sbjct: 1   MMSRGGAKAASSLLKAARPRLFSTATTSTIRSISHETSHLLRPAVADLASPSGMSGWIWT 60

Query: 40  VRAPILGSRNRSTLALGGEKEQQREEN---VQTTGAAAAGGSGNKDEKRIVSYWGVEAPK 96
            RAP +G    ++    GEK    + N    +   +      GNK  K I SYWGVE  K
Sbjct: 61  TRAPAMGGVRFASTVTLGEKTTTTDANPKKAENESSTGGDAGGNKGGKGIASYWGVEPSK 120

Query: 97  VNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRR 156
           + K+DG+EWKWNCFRPWE Y+ADL+IDL KHH PTTF D++A WTVKSLRWPTDLFFQRR
Sbjct: 121 ITKEDGTEWKWNCFRPWETYKADLTIDLSKHHVPTTFLDRLAYWTVKSLRWPTDLFFQRR 180

Query: 157 YGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAK 216
           YGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENERMHLMTFMEVAK
Sbjct: 181 YGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAK 240

Query: 217 PKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIEN 276
           PKWYERALV  VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIEN
Sbjct: 241 PKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIEN 300

Query: 277 VPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPL 333
           VPAPAIA DYWRLP ++TL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+L+E+PAP+
Sbjct: 301 VPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHFASDIHYQGRELKEAPAPI 357


>gi|1588565|prf||2208475A alternative oxidase 1
          Length = 344

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 231/302 (76%), Positives = 261/302 (86%), Gaps = 8/302 (2%)

Query: 37  TFLVRAPILGSRNRSTLALGG--EKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEA 94
            +LVR P+  SR  ST++     E E   + +V  T  A     G+ ++K +VSYWGV  
Sbjct: 49  VWLVRFPL--SRAASTMSAPAAPEGETAAKGDVDVTKKA----EGDTEQKAVVSYWGVPP 102

Query: 95  PKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQ 154
            +V K+DGS W+W CFRPWEAYE+D+SIDLKKHHAPTTF DKMA WTVKSLRWPTD+FFQ
Sbjct: 103 SRVTKEDGSPWRWACFRPWEAYESDMSIDLKKHHAPTTFLDKMAFWTVKSLRWPTDIFFQ 162

Query: 155 RRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEV 214
           RRYGCRAMMLETVAAVPGMVGG+LLH KSLRRFEHSGGWIKALLEEAENERMHLMTFMEV
Sbjct: 163 RRYGCRAMMLETVAAVPGMVGGLLLHLKSLRRFEHSGGWIKALLEEAENERMHLMTFMEV 222

Query: 215 AKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI 274
           ++P+WYERALV AVQGVFFNAYFLGYL+SPKFAHR+VGYLEEEAIHSYTEFLKE+DKG I
Sbjct: 223 SQPRWYERALVLAVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEFLKEIDKGTI 282

Query: 275 ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLG 334
           +NVPAPAIA DYWRLPP STL+DVV+VVRADEAHHRDVNH+ASD+HYQG QL+E+PAPLG
Sbjct: 283 DNVPAPAIALDYWRLPPGSTLRDVVMVVRADEAHHRDVNHFASDVHYQGHQLKEAPAPLG 342

Query: 335 YH 336
           YH
Sbjct: 343 YH 344


>gi|308153038|dbj|BAJ22108.1| alternative oxidase 1a [Arum maculatum]
          Length = 347

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 231/323 (71%), Positives = 261/323 (80%), Gaps = 3/323 (0%)

Query: 14  TARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKEQQREENVQTTGAA 73
           TA TAS+    R  A Q  R     L R P   S  R    L    +   ++    T   
Sbjct: 28  TADTASSALLHRCSAAQAQR---AGLCRPPSWFSPPRRASTLSEPAQDGGKDQKAGTAGE 84

Query: 74  AAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTF 133
              G G  ++K +VSYWGV   +V+K+DGSEW+W CFRPW+ Y+ADLSIDL+KHHAPTT 
Sbjct: 85  VPPGEGGAEQKAVVSYWGVPPSRVSKEDGSEWRWTCFRPWDTYQADLSIDLQKHHAPTTI 144

Query: 134 SDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW 193
            DK+AL+TVK+LRWPTD+FFQRRYGCRAMMLETVAAVPGMVGG+LLH KSLRRFEHSGGW
Sbjct: 145 LDKLALYTVKALRWPTDIFFQRRYGCRAMMLETVAAVPGMVGGLLLHLKSLRRFEHSGGW 204

Query: 194 IKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGY 253
           IK LLEEAENERMHLMTFMEV++P+WYERALV AVQGVFFNAYFLGYLISPKFAHR+VGY
Sbjct: 205 IKTLLEEAENERMHLMTFMEVSQPRWYERALVLAVQGVFFNAYFLGYLISPKFAHRVVGY 264

Query: 254 LEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVN 313
           LEEEAIHSYTEFLKE+DKG IENVPAPAIA DYWRLPP STL+DVV+VVRADEAHHRDVN
Sbjct: 265 LEEEAIHSYTEFLKEIDKGTIENVPAPAIALDYWRLPPGSTLRDVVMVVRADEAHHRDVN 324

Query: 314 HYASDIHYQGRQLRESPAPLGYH 336
           H+ASD+HYQG QL+ +PAPLGYH
Sbjct: 325 HFASDVHYQGHQLKAAPAPLGYH 347


>gi|297830952|ref|XP_002883358.1| hypothetical protein ARALYDRAFT_342380 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329198|gb|EFH59617.1| hypothetical protein ARALYDRAFT_342380 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 324

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 236/337 (70%), Positives = 273/337 (81%), Gaps = 15/337 (4%)

Query: 1   MMYRGGVRLFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILGS-RNRSTLALGGEK 59
           MM R G +  +T  + +        ++A           VR P++G  R+ S +     +
Sbjct: 2   MMSRCGAKAMATAVSHSHLLNPRVPLVAEN---------VRVPMMGVVRDFSKMTF---E 49

Query: 60  EQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEAD 119
           +++  E  ++ G  A    GNK E+ IVSYWGV+  K+ K+DG+EWKW+CFRPWE Y++D
Sbjct: 50  KKKTTEEKESNGGKA--DQGNKGEQLIVSYWGVKPMKITKEDGTEWKWSCFRPWETYKSD 107

Query: 120 LSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLL 179
           L+IDLKKHH P+T SDK+A WTVKSLRWPTD+FFQRRYGCRAMMLETVAAVPGMVGGML+
Sbjct: 108 LTIDLKKHHVPSTLSDKLAYWTVKSLRWPTDVFFQRRYGCRAMMLETVAAVPGMVGGMLV 167

Query: 180 HCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLG 239
           HCKSLRRFE SGGWIKALLEEAENERMHLMTFMEVAKP WYERALV AVQGVFFNAYFLG
Sbjct: 168 HCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPNWYERALVIAVQGVFFNAYFLG 227

Query: 240 YLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVV 299
           YLISPKFAHRMVGYLEEEAIHSYTEFLKELD GNIENVPAPAIA DYWRL  ++TL+DVV
Sbjct: 228 YLISPKFAHRMVGYLEEEAIHSYTEFLKELDNGNIENVPAPAIAIDYWRLEADATLRDVV 287

Query: 300 LVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           +VVRADEAHHRDVNHYASDIHYQGR+L+E+PAP+GYH
Sbjct: 288 MVVRADEAHHRDVNHYASDIHYQGRELKEAPAPIGYH 324


>gi|46452193|gb|AAS98193.1| alternative oxidase 1au [Solanum lycopersicum]
          Length = 358

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 234/298 (78%), Positives = 253/298 (84%), Gaps = 11/298 (3%)

Query: 45  LGSRNRSTLALGGEKEQQRE------ENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVN 98
           +GSR+ ST AL  +K+Q++E      EN  T  AA  GG G    K +VSYWGV   K  
Sbjct: 66  MGSRSASTAALN-DKQQEKESSDKKVENTATATAAVNGGVG----KSVVSYWGVPPSKAT 120

Query: 99  KDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYG 158
           K DG+EWKWNCFRPWE YEAD+SIDL KHHAP TF DK A WTVK LR+PTD+FFQRRYG
Sbjct: 121 KPDGTEWKWNCFRPWETYEADMSIDLTKHHAPVTFLDKFAYWTVKILRFPTDVFFQRRYG 180

Query: 159 CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 218
           CRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENERMHLMTFMEVAKP 
Sbjct: 181 CRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPN 240

Query: 219 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVP 278
            YERALVFAVQGVFFNAYF  YLISPK AHR+VGYLEEEA+ SYTEFLKELD GNIENVP
Sbjct: 241 VYERALVFAVQGVFFNAYFAAYLISPKLAHRIVGYLEEEAVLSYTEFLKELDNGNIENVP 300

Query: 279 APAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           APAIA DYWRLP ++TL+DVVLVVRADEAHHRDVNHYASDIHYQG+QL++SPAPLGYH
Sbjct: 301 APAIAIDYWRLPKDATLRDVVLVVRADEAHHRDVNHYASDIHYQGQQLKDSPAPLGYH 358


>gi|633600|emb|CAA56163.1| alternative oxidase [Nicotiana tabacum]
          Length = 297

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 234/294 (79%), Positives = 261/294 (88%), Gaps = 3/294 (1%)

Query: 43  PILGSRNRSTLALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDG 102
           P++G R+ ST+AL    ++Q ++ V+  GAAA+GG    DEK +VSYWGV   KV K+DG
Sbjct: 7   PVMGPRSASTVALN---DKQHDKKVENGGAAASGGGDGGDEKSVVSYWGVPPSKVTKEDG 63

Query: 103 SEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAM 162
           +EWKWNCFRPWE Y+ADLSIDL KHHAPTTF DK A WTVK+LR+PTD+FFQRRYGCRAM
Sbjct: 64  TEWKWNCFRPWETYKADLSIDLTKHHAPTTFLDKFAYWTVKALRYPTDIFFQRRYGCRAM 123

Query: 163 MLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYER 222
           MLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENERMHLMTFMEVAKP WYER
Sbjct: 124 MLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPNWYER 183

Query: 223 ALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAI 282
           ALVFAVQGVF NAYF+ YL+SPK A R+VGYLEEEAIHSYTEFLKELDKGNIENVPAPAI
Sbjct: 184 ALVFAVQGVFINAYFVTYLLSPKLAXRIVGYLEEEAIHSYTEFLKELDKGNIENVPAPAI 243

Query: 283 ATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           A DYWRLP +STL+DVVLVVRADEAHHRDVNH+A DIHYQG+QL++SPAP+GYH
Sbjct: 244 AIDYWRLPKDSTLRDVVLVVRADEAHHRDVNHFAPDIHYQGQQLKDSPAPIGYH 297


>gi|308153048|dbj|BAJ22113.1| alternative oxidase 1f [Arum maculatum]
          Length = 343

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 231/320 (72%), Positives = 256/320 (80%), Gaps = 4/320 (1%)

Query: 17  TASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKEQQREENVQTTGAAAAG 76
           TAS+    R  A Q  R      +  P   S  R    L    +   ++    T      
Sbjct: 28  TASSALLHRCSAAQAQR----AGLWPPSWFSPPRRASTLSDPAQDGGKDQKAGTAGKVPP 83

Query: 77  GSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDK 136
           G G  ++K +VSYWGV   ++ K+DGS W+W CFRPWE YE DLSIDLKKHHAPTTF DK
Sbjct: 84  GEGGAEQKAVVSYWGVPPSRMTKEDGSPWRWTCFRPWETYEPDLSIDLKKHHAPTTFLDK 143

Query: 137 MALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKA 196
           MALWTVKSLRWPTD+FFQRRYGCRAMMLETVAAVPGMVGG+LLH KSLRRFEHSGGWIK 
Sbjct: 144 MALWTVKSLRWPTDIFFQRRYGCRAMMLETVAAVPGMVGGLLLHLKSLRRFEHSGGWIKT 203

Query: 197 LLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEE 256
           LLEEAENERMHLMTFMEV++P+WYERALV AVQGVFFNAYFLGYLISPKFAHR+VGYLEE
Sbjct: 204 LLEEAENERMHLMTFMEVSQPRWYERALVLAVQGVFFNAYFLGYLISPKFAHRVVGYLEE 263

Query: 257 EAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYA 316
           EAIHSYTEFLKE+DKG IENVPAPAIA DYWRLPP STL+DVV+VVRADEAHHRDVNH+A
Sbjct: 264 EAIHSYTEFLKEIDKGTIENVPAPAIALDYWRLPPGSTLRDVVMVVRADEAHHRDVNHFA 323

Query: 317 SDIHYQGRQLRESPAPLGYH 336
           SD+HYQG QL+ +PAPLGYH
Sbjct: 324 SDVHYQGHQLKAAPAPLGYH 343


>gi|225571959|gb|ABZ81227.2| mitochondrial alternative oxidase 1a [Daucus carota]
          Length = 326

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 232/336 (69%), Positives = 267/336 (79%), Gaps = 11/336 (3%)

Query: 1   MMYRGGVRLFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKE 60
           MM RG        T+R A    A R+ +        +   + P++G R RS+L LG EKE
Sbjct: 2   MMTRG--------TSRVARLTTADRLFSAVKGAAAES--EKFPVMGVRWRSSLTLG-EKE 50

Query: 61  QQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADL 120
           Q    +    G          +++ + SYWG++  +V K+DG+ WKWNCFRPWE Y+ADL
Sbjct: 51  QVNGSSAAAAGGGDNKREDGGNKEVVASYWGIKGEEVKKEDGTPWKWNCFRPWETYQADL 110

Query: 121 SIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH 180
           +IDLKKHH PTTF DK+A WTVKSLR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH
Sbjct: 111 TIDLKKHHVPTTFLDKLAYWTVKSLRFPTDVFFQRRYGCRAMMLETVAAVPGMVGGMLLH 170

Query: 181 CKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGY 240
           CKSLRRFEHSGGWIK LL+EAENERMHLMTFMEV++P+WYERALVF VQGVFFNAYFL Y
Sbjct: 171 CKSLRRFEHSGGWIKTLLDEAENERMHLMTFMEVSQPRWYERALVFTVQGVFFNAYFLAY 230

Query: 241 LISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVL 300
           L SPK AHR+VGYLEEEAIHSYTEFLKELDKG IENVPAPAIA DYWRLP +STL+DVV+
Sbjct: 231 LASPKLAHRVVGYLEEEAIHSYTEFLKELDKGTIENVPAPAIAIDYWRLPADSTLRDVVM 290

Query: 301 VVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           VVRADEAHHRDVNH+ASDIHYQG +L++SPAPLGYH
Sbjct: 291 VVRADEAHHRDVNHFASDIHYQGHELKDSPAPLGYH 326


>gi|226897261|dbj|BAH56639.1| alternative oxidase 1a [Nelumbo nucifera]
          Length = 344

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 226/297 (76%), Positives = 258/297 (86%), Gaps = 4/297 (1%)

Query: 40  VRAPILGSRNRSTLALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNK 99
           +R   LG RN ST AL  ++++  E+ V+T+  +  GG+   ++K IVSYWG+    + K
Sbjct: 52  IRFSCLGVRNGSTSALNNKEKE--EKGVRTS--STVGGANRPEDKMIVSYWGMPPANLTK 107

Query: 100 DDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC 159
            DGSEWKWN FRPWE Y+ADLSIDLKKHH+P TF DK+A WTVK+LR+PTD+ FQ RYGC
Sbjct: 108 KDGSEWKWNSFRPWETYKADLSIDLKKHHSPVTFMDKLAYWTVKALRYPTDILFQNRYGC 167

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
           RAMMLETVAAVPGMVGGMLLH KSLRRFEHSGGWIK LLEEAENERMHLMTFMEV++PKW
Sbjct: 168 RAMMLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKTLLEEAENERMHLMTFMEVSQPKW 227

Query: 220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPA 279
           YERALV AVQGVFFN YFLGYLISP+FAHR+VGYLEEEAIHSYTEFLKELDKGNI+NVPA
Sbjct: 228 YERALVVAVQGVFFNTYFLGYLISPRFAHRVVGYLEEEAIHSYTEFLKELDKGNIQNVPA 287

Query: 280 PAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           PAIA DYW+LPP+STL+DVV+VVRADEAHHRDVNH+ASDIH QG +L+ESPAPLGYH
Sbjct: 288 PAIAVDYWQLPPDSTLRDVVMVVRADEAHHRDVNHFASDIHDQGYELKESPAPLGYH 344


>gi|269784500|dbj|BAI49704.1| alternative oxidase [Lysichiton camtschatcensis]
          Length = 352

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 229/308 (74%), Positives = 260/308 (84%), Gaps = 12/308 (3%)

Query: 35  LSTFLVRAPILGS-RNRSTLAL-----GGEKEQQREENVQTTGAAAAGGSGNKDEKRIVS 88
           ++ +L+R P   S R+ STL+      G EKE ++ E       AA       +EK +VS
Sbjct: 51  VAVWLLRLPGAASLRSASTLSAPVTVAGEEKEGKKAE------VAAPKAGARAEEKAVVS 104

Query: 89  YWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWP 148
           YWGV   K  K+DGSEW+W+CFRPWE YEAD+SIDLKKHHAPTTF DK+A WTVKSLR+P
Sbjct: 105 YWGVPPSKATKEDGSEWRWSCFRPWETYEADMSIDLKKHHAPTTFLDKLAFWTVKSLRYP 164

Query: 149 TDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHL 208
           TD+FFQRRYGCRAMMLETVAAVPGMVGG+LLH KSLRRFEHSGGWIK LLEEAENERMHL
Sbjct: 165 TDVFFQRRYGCRAMMLETVAAVPGMVGGLLLHLKSLRRFEHSGGWIKTLLEEAENERMHL 224

Query: 209 MTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 268
           MTFMEV++P+WYERALV AVQGVFFNAYFLGYL+SPKFAHR+VGYLEEEAIHSYTEFLKE
Sbjct: 225 MTFMEVSQPRWYERALVLAVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEFLKE 284

Query: 269 LDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRE 328
           +D G IENVPAPAIA DYWRLP  STL+DVV+VVRADEAHHRDVNH+ASDIHYQG +L++
Sbjct: 285 IDNGTIENVPAPAIALDYWRLPQGSTLRDVVMVVRADEAHHRDVNHFASDIHYQGHELKK 344

Query: 329 SPAPLGYH 336
           +PAPLGYH
Sbjct: 345 APAPLGYH 352


>gi|224228409|dbj|BAH23672.1| alternative oxidase [Arum concinnatum]
          Length = 346

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 231/323 (71%), Positives = 260/323 (80%), Gaps = 4/323 (1%)

Query: 14  TARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKEQQREENVQTTGAA 73
           TA TAS+    R  A Q  R     L   P   S  R    L    +   +E   T G  
Sbjct: 28  TADTASSALLHRCSAAQAQR---AGLCWPPSWFSPPRRASTLSDPAQDGGKEKAGTAGEV 84

Query: 74  AAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTF 133
             G  G  ++K +VSYWGV   +V+K+DGSEW+W CFRPW+ Y+AD SIDL+KHHAPTT 
Sbjct: 85  PPG-EGGAEQKAVVSYWGVPPSRVSKEDGSEWRWTCFRPWDTYQADFSIDLQKHHAPTTI 143

Query: 134 SDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW 193
            DK+AL+TVK+LRWPTD+FFQRRY CRAMMLETVAAVPGMVGG+LLH KSLRRF+HSGGW
Sbjct: 144 LDKLALYTVKALRWPTDIFFQRRYACRAMMLETVAAVPGMVGGVLLHLKSLRRFDHSGGW 203

Query: 194 IKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGY 253
           IKALLEEAENERMHLMTFMEVA+P+WYERALV AVQGVFFNAYFLGYLISPKFAHR+VGY
Sbjct: 204 IKALLEEAENERMHLMTFMEVAQPRWYERALVVAVQGVFFNAYFLGYLISPKFAHRVVGY 263

Query: 254 LEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVN 313
           LEEEAIHSYTEFLKE+DKG IENVPAPAIA DYWRLPP STL+DVV+VVRADEAHHRDVN
Sbjct: 264 LEEEAIHSYTEFLKEIDKGTIENVPAPAIALDYWRLPPGSTLRDVVMVVRADEAHHRDVN 323

Query: 314 HYASDIHYQGRQLRESPAPLGYH 336
           H+ASD+HYQG QL+ +PAPLGYH
Sbjct: 324 HFASDVHYQGHQLKAAPAPLGYH 346


>gi|224118198|ref|XP_002317755.1| predicted protein [Populus trichocarpa]
 gi|222858428|gb|EEE95975.1| predicted protein [Populus trichocarpa]
          Length = 253

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 219/253 (86%), Positives = 235/253 (92%)

Query: 84  KRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVK 143
           K  VSYWGV   +V K+DG+EWKWN FRPWE Y ADLSI+L KHHAP T  D+MA WTVK
Sbjct: 1   KETVSYWGVPPSRVTKEDGTEWKWNSFRPWETYSADLSINLTKHHAPVTLLDRMAYWTVK 60

Query: 144 SLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAEN 203
           SLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHC+SLRRFEHSGGWIKALLEEAEN
Sbjct: 61  SLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCRSLRRFEHSGGWIKALLEEAEN 120

Query: 204 ERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYT 263
           ERMHLMTFMEV+ P+WYERALVF VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYT
Sbjct: 121 ERMHLMTFMEVSNPRWYERALVFTVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYT 180

Query: 264 EFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQG 323
           EFLKELDKGNI+NVPAPAIA DYWRLPPNSTL+DVV+ VRADEAHHRDVNH+ASDIHYQG
Sbjct: 181 EFLKELDKGNIKNVPAPAIAIDYWRLPPNSTLRDVVVAVRADEAHHRDVNHFASDIHYQG 240

Query: 324 RQLRESPAPLGYH 336
           R+L+E+PAP+GYH
Sbjct: 241 RELKEAPAPIGYH 253


>gi|12583703|dbj|BAB21500.1| alternative oxidase [Catharanthus roseus]
          Length = 353

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/358 (65%), Positives = 277/358 (77%), Gaps = 27/358 (7%)

Query: 1   MMYRGGVRLFSTLTARTAS---TEAAAR----ILAGQTNRHLSTFL-------------- 39
           MM RG  R+  +L  + +    + AA R     L   T+   +TFL              
Sbjct: 1   MMSRGATRISRSLICQISPRYFSSAAVRGHEPSLGILTSGGTTTFLHGNPGNGSERTALT 60

Query: 40  -VRAPILGSRNRSTLALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVN 98
            ++ P++ +R+ ST+A   +K+  ++E  +     A G +GNK    +VSYWGVEAPK+ 
Sbjct: 61  WIKLPMMRARSASTVATVDQKD--KDEKREDKNGVADGENGNK---AVVSYWGVEAPKLT 115

Query: 99  KDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYG 158
           K+DG+ W+W CFRPWE Y+ D  I+LKKHH P T  DK+A +TVK+LRWPTDLFFQRRYG
Sbjct: 116 KEDGTVWRWTCFRPWETYKPDTDIELKKHHVPVTLLDKVAFFTVKALRWPTDLFFQRRYG 175

Query: 159 CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 218
           CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEV+KP+
Sbjct: 176 CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVSKPR 235

Query: 219 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVP 278
           WYERALVFAVQGVFFNAYFL YL SPK AHR+VGYLEEEAIHSY+EFL ELDKGNIENVP
Sbjct: 236 WYERALVFAVQGVFFNAYFLTYLASPKLAHRIVGYLEEEAIHSYSEFLNELDKGNIENVP 295

Query: 279 APAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           APAIA DYW++PP+STL+DVV+VVRADEAHHRDVNHYASDIHY+G +L+E+ APL YH
Sbjct: 296 APAIAIDYWQMPPDSTLRDVVMVVRADEAHHRDVNHYASDIHYKGLELKEAAAPLDYH 353


>gi|308153042|dbj|BAJ22110.1| alternative oxidase 1c [Arum maculatum]
          Length = 343

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/323 (71%), Positives = 261/323 (80%), Gaps = 10/323 (3%)

Query: 17  TASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTL---ALGGEKEQQREENVQTTGAA 73
           TAS+    R  A Q  R  +     +     R  STL   A  G K+Q+       T   
Sbjct: 28  TASSALLHRCSAAQAQR--AGLWPPSRFSPPRRASTLSDPAQDGGKDQK-----AGTAGK 80

Query: 74  AAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTF 133
              G G  ++K +VSYWGV   +V+K+DGSEW+W CFRPW+ Y+ADLSIDL+KHHAPTT 
Sbjct: 81  VPPGEGGAEQKAVVSYWGVPPSRVSKEDGSEWRWTCFRPWDTYQADLSIDLQKHHAPTTI 140

Query: 134 SDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW 193
            DK+AL+TVK+LRWPTD+FFQRRY CRAMMLETVAAVPGMVGG+LLH KSLRRFEHSGGW
Sbjct: 141 LDKLALYTVKALRWPTDIFFQRRYACRAMMLETVAAVPGMVGGLLLHLKSLRRFEHSGGW 200

Query: 194 IKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGY 253
           IK LLEEAENERMHLMTFMEV++P+WYERALV AVQGVFFNAYFLGYLISPKFAHR+VGY
Sbjct: 201 IKTLLEEAENERMHLMTFMEVSQPRWYERALVLAVQGVFFNAYFLGYLISPKFAHRVVGY 260

Query: 254 LEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVN 313
           LEEEAIHSYTEFLKE+DKG IENVPAPAIA DYWRLPP STL+DVV+VVRADEAHHRDVN
Sbjct: 261 LEEEAIHSYTEFLKEIDKGTIENVPAPAIALDYWRLPPGSTLRDVVMVVRADEAHHRDVN 320

Query: 314 HYASDIHYQGRQLRESPAPLGYH 336
           H+ASD+HYQG QL+ +PAPLGYH
Sbjct: 321 HFASDVHYQGHQLKAAPAPLGYH 343


>gi|308153044|dbj|BAJ22111.1| alternative oxidase 1d [Arum maculatum]
          Length = 343

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/323 (71%), Positives = 262/323 (81%), Gaps = 10/323 (3%)

Query: 17  TASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTL---ALGGEKEQQREENVQTTGAA 73
           TAS+    R  A Q  R  +     +     R  STL   A  G K+Q+       T   
Sbjct: 28  TASSALLHRCSAAQAQR--AGLWPPSRFSPPRRASTLSDPAQDGGKDQK-----AGTAGK 80

Query: 74  AAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTF 133
              G G  ++K +VSYWGV   +V+K+DGSEW+W CFRPW+ Y+ADLSIDL+KHHAPTT 
Sbjct: 81  VPPGEGGAEQKAVVSYWGVPPSRVSKEDGSEWRWTCFRPWDTYQADLSIDLQKHHAPTTI 140

Query: 134 SDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW 193
            DK+AL+TVK+LRWPTD+FFQRRY CRAMMLETVAAVPGMVGG+LLH KSLRRF+HSGGW
Sbjct: 141 LDKLALYTVKALRWPTDIFFQRRYACRAMMLETVAAVPGMVGGVLLHLKSLRRFDHSGGW 200

Query: 194 IKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGY 253
           IKALLEEAENERMHLMTFMEV++P+WYERALV AVQGVFFNAYFLGYLISPKFAHR+VGY
Sbjct: 201 IKALLEEAENERMHLMTFMEVSQPRWYERALVLAVQGVFFNAYFLGYLISPKFAHRVVGY 260

Query: 254 LEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVN 313
           LEEEAIHSYTEFLKE+DKG IENVPAPAIA DYWRLPP STL+DVV+VVRADEAHHRDVN
Sbjct: 261 LEEEAIHSYTEFLKEIDKGTIENVPAPAIALDYWRLPPGSTLRDVVMVVRADEAHHRDVN 320

Query: 314 HYASDIHYQGRQLRESPAPLGYH 336
           H+ASD+HYQG QL+ +PAPLGYH
Sbjct: 321 HFASDVHYQGHQLKAAPAPLGYH 343


>gi|57157824|dbj|BAD83866.1| skunk cabbage alternative oxidase [Symplocarpus renifolius]
          Length = 349

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 225/307 (73%), Positives = 261/307 (85%), Gaps = 10/307 (3%)

Query: 35  LSTFLVRAPILGS-RNRSTL----ALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSY 89
           ++ +L+R P   S R+ STL    A+ GE+++ ++  V     AA       ++K +VS+
Sbjct: 48  VAVWLLRLPGAASLRSVSTLSAPLAVAGEEKEGKKAEV-----AAPKAGARVEDKAVVSH 102

Query: 90  WGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPT 149
           WG+   K  K+DGSEW+W+CFRPWE YEADLSIDLKKHHAPTTF DK+A WTVKSLR+PT
Sbjct: 103 WGIPPSKATKEDGSEWRWSCFRPWETYEADLSIDLKKHHAPTTFLDKLAFWTVKSLRYPT 162

Query: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 209
           D+FFQRRYGCRAMMLETVAAVPGMVGG+LLH KSLRRFEHSGGWIK LL EAENERMHLM
Sbjct: 163 DVFFQRRYGCRAMMLETVAAVPGMVGGLLLHLKSLRRFEHSGGWIKTLLNEAENERMHLM 222

Query: 210 TFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKEL 269
           TFMEV++P+WYERALV AVQGVFFNAYFLGYL+SPKFAHR+VGYLEEEAIHSYTEF+KE+
Sbjct: 223 TFMEVSEPRWYERALVLAVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEFIKEI 282

Query: 270 DKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRES 329
           D G IENVPAPAIA DYWRLP  STL+DVV+VVRADEAHHRDVNH+ASDIHYQG +L++S
Sbjct: 283 DNGTIENVPAPAIALDYWRLPQGSTLRDVVMVVRADEAHHRDVNHFASDIHYQGHELKKS 342

Query: 330 PAPLGYH 336
           PAPLGYH
Sbjct: 343 PAPLGYH 349


>gi|297818362|ref|XP_002877064.1| hypothetical protein ARALYDRAFT_347138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322902|gb|EFH53323.1| hypothetical protein ARALYDRAFT_347138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 330

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/296 (76%), Positives = 250/296 (84%)

Query: 41  RAPILGSRNRSTLALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKD 100
           RAP +G     +  +  +K+   EE     G  A     NK E+ IVSYWGV+  K+ K+
Sbjct: 35  RAPAMGGLRDFSKMIFEKKKTLEEEKRSGDGEKANDQGSNKWEQLIVSYWGVKPMKITKE 94

Query: 101 DGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCR 160
           DG+EWKW CFRPWE Y+ADL+IDLKKHH P+T  DK+A W VKSLRWPTDLFFQRRYGCR
Sbjct: 95  DGTEWKWTCFRPWETYKADLTIDLKKHHVPSTLPDKLAYWMVKSLRWPTDLFFQRRYGCR 154

Query: 161 AMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWY 220
           AMMLETVAAVPGMVGGML+H KSLRRFE SGGWIKALLEEAENERMHLMTFMEVAKPKWY
Sbjct: 155 AMMLETVAAVPGMVGGMLMHFKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPKWY 214

Query: 221 ERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAP 280
           ERALV AVQGVFFNAY LGYLISPKFAHRMVGYLEEEAIHSYTEFLKELD GNIENVPAP
Sbjct: 215 ERALVIAVQGVFFNAYLLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDNGNIENVPAP 274

Query: 281 AIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           AIA DYWRL  ++TL+DVV+VVRADEAHHRDVNHYASDIHYQG +L+E+PAP+GYH
Sbjct: 275 AIAIDYWRLEADATLRDVVMVVRADEAHHRDVNHYASDIHYQGHELKEAPAPIGYH 330


>gi|404160475|gb|AFR53081.1| AOX [Anthurium andraeanum]
          Length = 345

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 216/254 (85%), Positives = 233/254 (91%)

Query: 83  EKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTV 142
           +K +VSYWGV   KV KDDGS W+W  FRPWE Y+ADLSIDLKKHHAPTT  DK+A WTV
Sbjct: 92  QKAVVSYWGVPPSKVTKDDGSAWRWASFRPWETYQADLSIDLKKHHAPTTILDKVAFWTV 151

Query: 143 KSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAE 202
           KSLRWPTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH KSLRRFEHSGGWIK LLEEAE
Sbjct: 152 KSLRWPTDVFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKGLLEEAE 211

Query: 203 NERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSY 262
           NERMHLMTFMEV +P+WYERALV  VQGVFFNAYFLGYL+SPKFAHR+VGYLEEEAIHSY
Sbjct: 212 NERMHLMTFMEVVQPRWYERALVMTVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSY 271

Query: 263 TEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQ 322
           TEFLKE+DKG IENVPAPAIA DYWRLPP STL+DVV+V+RADEAHHRDVNH+ASDIHYQ
Sbjct: 272 TEFLKEIDKGTIENVPAPAIALDYWRLPPGSTLRDVVMVIRADEAHHRDVNHFASDIHYQ 331

Query: 323 GRQLRESPAPLGYH 336
           GR+LR +PAPLGYH
Sbjct: 332 GRELRTAPAPLGYH 345


>gi|2696032|dbj|BAA23803.1| alternative oxidase [Catharanthus roseus]
          Length = 353

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 233/358 (65%), Positives = 276/358 (77%), Gaps = 27/358 (7%)

Query: 1   MMYRGGVRLFSTLTARTAS---TEAAAR----ILAGQTNRHLSTFL-------------- 39
           MM RG  R+  +L  + +    + AA R     L   T+   +TFL              
Sbjct: 1   MMSRGATRISRSLICQISPRYFSSAAVRGHEPSLGILTSGGTTTFLHGNPGNGSERTALT 60

Query: 40  -VRAPILGSRNRSTLALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVN 98
            ++ P++ +R+ ST+A   +K+  ++E  +     A G +GNK    +VSYWGVEAPK+ 
Sbjct: 61  WIKLPMMRARSASTVATVDQKD--KDEKREDKNGVADGENGNK---AVVSYWGVEAPKLT 115

Query: 99  KDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYG 158
           K+DG+ W+W CFRPWE Y+ D  I+LKKHH P T  DK+A +TVK+LRWPTDLFFQRRYG
Sbjct: 116 KEDGTVWRWTCFRPWETYKPDTDIELKKHHVPVTLLDKVAFFTVKALRWPTDLFFQRRYG 175

Query: 159 CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 218
           CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEV+KP+
Sbjct: 176 CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVSKPR 235

Query: 219 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVP 278
           WYERALVFAVQGVFFNAYFL YL SPK AHR+VGYLEEEAIHSY+EFL ELDKGNIENVP
Sbjct: 236 WYERALVFAVQGVFFNAYFLTYLASPKLAHRIVGYLEEEAIHSYSEFLNELDKGNIENVP 295

Query: 279 APAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           APAIA DYW++PP+STL+DVV+VVRADEA HRDVNHYASDIHY+G +L+E+ APL YH
Sbjct: 296 APAIAIDYWQMPPDSTLRDVVMVVRADEALHRDVNHYASDIHYKGLELKEAAAPLDYH 353


>gi|15232222|ref|NP_189399.1| alternative oxidase 1C [Arabidopsis thaliana]
 gi|3913142|sp|O22048.1|AOX1C_ARATH RecName: Full=Ubiquinol oxidase 1c, mitochondrial; AltName:
           Full=Alternative oxidase 1c; Flags: Precursor
 gi|2506049|dbj|BAA22635.1| alternative oxidase [Arabidopsis thaliana]
 gi|9294467|dbj|BAB02686.1| alternative oxidase [Arabidopsis thaliana]
 gi|28393506|gb|AAO42174.1| putative alternative oxidase 1c precursor [Arabidopsis thaliana]
 gi|28973125|gb|AAO63887.1| putative alternative oxidase 1c precursor [Arabidopsis thaliana]
 gi|332643824|gb|AEE77345.1| alternative oxidase 1C [Arabidopsis thaliana]
          Length = 329

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 215/259 (83%), Positives = 238/259 (91%)

Query: 78  SGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKM 137
            GNK E+ IVSYWGV+  K+ K+DG+EWKW+CFRPWE Y+ADL+IDLKKHH P+T  DK+
Sbjct: 71  QGNKGEQLIVSYWGVKPMKITKEDGTEWKWSCFRPWETYKADLTIDLKKHHVPSTLPDKI 130

Query: 138 ALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKAL 197
           A W VKSLRWPTDLFFQRRYGCRA+MLETVAAVPGMVGGML+H KSLRRFE SGGWIKAL
Sbjct: 131 AYWMVKSLRWPTDLFFQRRYGCRAIMLETVAAVPGMVGGMLMHFKSLRRFEQSGGWIKAL 190

Query: 198 LEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEE 257
           LEEAENERMHLMTFMEVAKPKWYERALV +VQGVFFNAY +GY+ISPKFAHRMVGYLEEE
Sbjct: 191 LEEAENERMHLMTFMEVAKPKWYERALVISVQGVFFNAYLIGYIISPKFAHRMVGYLEEE 250

Query: 258 AIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYAS 317
           AIHSYTEFLKELD GNIENVPAPAIA DYWRL  ++TL+DVV+VVRADEAHHRDVNHYAS
Sbjct: 251 AIHSYTEFLKELDNGNIENVPAPAIAVDYWRLEADATLRDVVMVVRADEAHHRDVNHYAS 310

Query: 318 DIHYQGRQLRESPAPLGYH 336
           DIHYQG +L+E+PAP+GYH
Sbjct: 311 DIHYQGHELKEAPAPIGYH 329


>gi|52421172|dbj|BAD51467.1| alternative oxidase [Philodendron bipinnatifidum]
          Length = 345

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 223/313 (71%), Positives = 257/313 (82%), Gaps = 12/313 (3%)

Query: 28  AGQTNRHLSTFLVRAPILGSRNRSTLA----LGGEKEQQREENVQTTGAAAAGGSGNKDE 83
           A  T  H   +++R P   +R  STL+    + G++E    +       AAA      ++
Sbjct: 41  AAPTPSHAHVWMLRFP--PARGASTLSAPMTVDGQEEAAATKQTDAAKVAAA------EQ 92

Query: 84  KRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVK 143
           K +VSYW V   +V  + GSEW+W CFRPWEAYEADLSIDLKKHHAPTTF DKMA  TV+
Sbjct: 93  KAVVSYWDVAPSRVTNEGGSEWRWACFRPWEAYEADLSIDLKKHHAPTTFLDKMAFRTVR 152

Query: 144 SLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAEN 203
           +LRWPTD+FFQRRY CRAMMLETVAAVPGMVGGMLLH KSLRRFEHSGGWIKALLEEAEN
Sbjct: 153 ALRWPTDIFFQRRYACRAMMLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKALLEEAEN 212

Query: 204 ERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYT 263
           ERMHLMTFMEV++P+WYERALV AVQGVFFNAYFLGYL+SPKFAHR+VGYLEEEAIHSYT
Sbjct: 213 ERMHLMTFMEVSQPRWYERALVLAVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYT 272

Query: 264 EFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQG 323
           EFLK++D+G I+NVPAPAIA DYWRLP  STL+DVV+V+RADEAHHRDVNH+ASDIHYQG
Sbjct: 273 EFLKDIDRGAIKNVPAPAIALDYWRLPQGSTLRDVVMVIRADEAHHRDVNHFASDIHYQG 332

Query: 324 RQLRESPAPLGYH 336
            +L+ +PAPLGYH
Sbjct: 333 HELKAAPAPLGYH 345


>gi|291245408|gb|ADD84881.1| mitochondrial AOX1A [Citrullus lanatus]
          Length = 315

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/284 (79%), Positives = 242/284 (85%), Gaps = 9/284 (3%)

Query: 40  VRAP-ILGSRNRSTLALG-----GEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVE 93
            RAP I G+R  ST+ LG      +   ++ E   +TG  A G    K EK I SYWGVE
Sbjct: 29  TRAPAIGGARFASTVTLGEKTTTTDANPKKAEKESSTGGDAGG---EKGEKGIASYWGVE 85

Query: 94  APKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFF 153
             K+ K+DGSEWKWNCFRPWE Y+ADL+IDL KHH PTTF DK+A WTVKSLRWPTDLFF
Sbjct: 86  PSKITKEDGSEWKWNCFRPWETYKADLTIDLSKHHVPTTFLDKIAYWTVKSLRWPTDLFF 145

Query: 154 QRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFME 213
           QRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENERMHLMTFME
Sbjct: 146 QRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFME 205

Query: 214 VAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN 273
           VAKPKWYERALV  VQGVFF+AYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN
Sbjct: 206 VAKPKWYERALVITVQGVFFSAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN 265

Query: 274 IENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYAS 317
           IENVPAPAIA DYWRLP ++TL+DVV+VVRADEAHHRDVNH+AS
Sbjct: 266 IENVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHFAS 309


>gi|308153046|dbj|BAJ22112.1| alternative oxidase 1e [Arum maculatum]
          Length = 343

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 217/292 (74%), Positives = 248/292 (84%), Gaps = 8/292 (2%)

Query: 48  RNRSTL---ALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSE 104
           R  STL   A  G K+Q+       T      G G  ++K +VSYWGV   +V+K+DGSE
Sbjct: 57  RRASTLSDPAQDGGKDQK-----AGTAGKVPPGEGGAEQKAVVSYWGVPPSRVSKEDGSE 111

Query: 105 WKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMML 164
           W+W CFRPW+ Y+ADLSIDL+KHHAPTT  DK+AL+TVK+LRWPTD+FFQRRY CRAMML
Sbjct: 112 WRWTCFRPWDTYQADLSIDLQKHHAPTTILDKLALYTVKALRWPTDIFFQRRYACRAMML 171

Query: 165 ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERAL 224
           ETVAAVPGMVGG+LLH KSLRRF+HSGGWIKALLEEAENERMHLMTFMEVA+P+WYERAL
Sbjct: 172 ETVAAVPGMVGGVLLHLKSLRRFDHSGGWIKALLEEAENERMHLMTFMEVAQPRWYERAL 231

Query: 225 VFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAT 284
           V AVQGVFFNAYF+GYL+SPKFAHR+VGYLEEEAIHSYTEFLK++D G I+N PAPAIA 
Sbjct: 232 VVAVQGVFFNAYFVGYLLSPKFAHRVVGYLEEEAIHSYTEFLKDIDSGAIQNTPAPAIAL 291

Query: 285 DYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           DYWRLP  STL+DVV VVRADEAHHRDVNH+ASD+HYQG QL+ +PAPLGYH
Sbjct: 292 DYWRLPQGSTLRDVVAVVRADEAHHRDVNHFASDVHYQGHQLKAAPAPLGYH 343


>gi|224228411|dbj|BAH23673.1| alternative oxidase [Arum concinnatum]
          Length = 346

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/323 (69%), Positives = 255/323 (78%), Gaps = 4/323 (1%)

Query: 14  TARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKEQQREENVQTTGAA 73
           TA TAS+    R  A    R     L   P   S  R    L    +   +E   T G  
Sbjct: 28  TADTASSALLHRCSAAPAQR---AGLCWPPSWFSPPRRASTLSDPAQDGGKEKAGTAGKV 84

Query: 74  AAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTF 133
             G  G  ++K +VSYWGV   +V+KDDGSEW+W CFRPW+ Y+ADLSIDL+KHHAPTT 
Sbjct: 85  PPG-EGGAEQKAVVSYWGVPPSRVSKDDGSEWRWTCFRPWDTYQADLSIDLQKHHAPTTI 143

Query: 134 SDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW 193
            DK+AL+TVK+LRWPTD+FFQRRY CRAMMLETVAAVPGMVGG+LLH KSLRRF+HSGGW
Sbjct: 144 LDKLALYTVKALRWPTDIFFQRRYACRAMMLETVAAVPGMVGGVLLHLKSLRRFDHSGGW 203

Query: 194 IKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGY 253
           IKALLEEAENERMHLMTFMEVA+P+WYERALV AVQGVFFNAYF+GYL+SPKFAHR+VGY
Sbjct: 204 IKALLEEAENERMHLMTFMEVAQPRWYERALVVAVQGVFFNAYFVGYLLSPKFAHRVVGY 263

Query: 254 LEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVN 313
           LEEEAIHSYTEFLK++D G I++ PAPAIA DYWRLP  STL+DVV VVRADEAHHRDVN
Sbjct: 264 LEEEAIHSYTEFLKDIDSGAIQDTPAPAIALDYWRLPQGSTLRDVVAVVRADEAHHRDVN 323

Query: 314 HYASDIHYQGRQLRESPAPLGYH 336
           H+ASD+HYQG QL+ +PA LGYH
Sbjct: 324 HFASDVHYQGHQLKAAPALLGYH 346


>gi|323575420|dbj|BAJ78238.1| alternative oxidase 1g [Arum maculatum]
          Length = 343

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 215/292 (73%), Positives = 248/292 (84%), Gaps = 8/292 (2%)

Query: 48  RNRSTL---ALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSE 104
           R  STL   A  G K+Q+       T      G G  ++K +VSYWGV   +V+K+DGSE
Sbjct: 57  RRASTLSDPAQDGGKDQK-----AGTAGKVPPGEGGAEQKAVVSYWGVPPSRVSKEDGSE 111

Query: 105 WKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMML 164
           W+W CFRPW+ Y+ADLSIDL+KHHAPTT  DK+AL+TVK+LRWPTD+FFQRRY CRAMML
Sbjct: 112 WRWTCFRPWDTYQADLSIDLQKHHAPTTILDKLALYTVKALRWPTDIFFQRRYACRAMML 171

Query: 165 ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERAL 224
           ETVAAVPGMVGG+LLH KSLRRF+HSGGWIKALLEEAENERMHLMTFMEVA+P+WYERAL
Sbjct: 172 ETVAAVPGMVGGVLLHLKSLRRFDHSGGWIKALLEEAENERMHLMTFMEVAQPRWYERAL 231

Query: 225 VFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAT 284
           V AVQGVFFNAYF+GYL+SPKFAHR+VGYLEEEAIHSYTEFLK++D G I++ PAPAIA 
Sbjct: 232 VVAVQGVFFNAYFVGYLLSPKFAHRVVGYLEEEAIHSYTEFLKDIDSGAIQDTPAPAIAL 291

Query: 285 DYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           DYWRLP  STL+DVV VVRADEAHHRDVNH+ASD+HYQG +L+ +PAPLGYH
Sbjct: 292 DYWRLPQGSTLRDVVAVVRADEAHHRDVNHFASDVHYQGLELKTTPAPLGYH 343


>gi|19912725|dbj|BAB88645.1| alternative oxidase [Triticum aestivum]
          Length = 328

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 210/277 (75%), Positives = 240/277 (86%), Gaps = 1/277 (0%)

Query: 61  QQREENVQTTGAAAAGGSGNKDEKRIVSYWGV-EAPKVNKDDGSEWKWNCFRPWEAYEAD 119
           Q ++E  +   A AA G G K E  I SYWG+ ++ K+ ++DG+EWKW+CFRPWE Y AD
Sbjct: 52  QVKDEAAKGVKAEAAKGDGEKKEVAISSYWGIDQSKKLVREDGTEWKWSCFRPWETYTAD 111

Query: 120 LSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLL 179
            SIDL KHH P T  DK+A +TVKSLR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLL
Sbjct: 112 TSIDLTKHHVPNTMLDKIAYYTVKSLRFPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLL 171

Query: 180 HCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLG 239
           H +SLRRFE SGGWI+ALLEEAENERMHLMTFMEVA+P+WYERALV AVQGVFFNAYF G
Sbjct: 172 HLRSLRRFEQSGGWIRALLEEAENERMHLMTFMEVAQPRWYERALVIAVQGVFFNAYFFG 231

Query: 240 YLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVV 299
           YLISPKFAHR+VGYLEEEA+HSYTEFLK+LD G I+NVPAPAIA DYWRLP N+TLKDVV
Sbjct: 232 YLISPKFAHRVVGYLEEEAVHSYTEFLKDLDDGKIDNVPAPAIAIDYWRLPANATLKDVV 291

Query: 300 LVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
            VVRADEAHHRDVNH+ASD++YQG QL+ +PAP+GYH
Sbjct: 292 TVVRADEAHHRDVNHFASDVYYQGMQLKATPAPIGYH 328


>gi|113982|sp|P22185.1|AOX1_TYPVN RecName: Full=Ubiquinol oxidase 1, mitochondrial; AltName:
           Full=Alternative oxidase 1; Flags: Precursor
 gi|170165|gb|AAA34048.1| alternative oxidase protein [Typhonium venosum]
          Length = 349

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 212/289 (73%), Positives = 245/289 (84%), Gaps = 1/289 (0%)

Query: 48  RNRSTLALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKW 107
           R+ STL+    ++  +E+   T G    G  G  +++ +VSYW V   KV+K+DGSEW+W
Sbjct: 62  RHASTLS-APAQDGGKEKAAGTAGKVPPGEDGGAEKEAVVSYWAVPPSKVSKEDGSEWRW 120

Query: 108 NCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETV 167
            CFRPWE Y+ADLSIDL KHH PTT  DK+AL TVK+LRWPTD+FFQRRY CRAMMLETV
Sbjct: 121 TCFRPWETYQADLSIDLHKHHVPTTILDKLALRTVKALRWPTDIFFQRRYACRAMMLETV 180

Query: 168 AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 227
           AAVPGMVGG+LLH KSLRRFEHSGGWI+ALLEEAENERMHLMTFMEVA+P+WYERALV A
Sbjct: 181 AAVPGMVGGVLLHLKSLRRFEHSGGWIRALLEEAENERMHLMTFMEVAQPRWYERALVLA 240

Query: 228 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYW 287
           VQGVFFNAYFLGYL+SPKFAHR+VGYLEEEAIHSYTEFLK++D G I++ PAPAIA DYW
Sbjct: 241 VQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEFLKDIDSGAIQDCPAPAIALDYW 300

Query: 288 RLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           RLP  STL+DVV VVRADEAHHRDVNH+ASD+HYQ  +L+ +PAPLGYH
Sbjct: 301 RLPQGSTLRDVVTVVRADEAHHRDVNHFASDVHYQDLELKTTPAPLGYH 349


>gi|21216|emb|CAA78823.1| salicylic acid-inducible alternative oxidase [Typhonium venosum]
          Length = 349

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 212/289 (73%), Positives = 245/289 (84%), Gaps = 1/289 (0%)

Query: 48  RNRSTLALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKW 107
           R+ STL+    ++  +E+   T G    G  G  +++ +VSYW V   KV+K+DGSEW+W
Sbjct: 62  RHASTLS-ARAQDGGKEKAAGTAGKVPPGEDGGAEKEAVVSYWAVPPSKVSKEDGSEWRW 120

Query: 108 NCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETV 167
            CFRPWE Y+ADLSIDL KHH PTT  DK+AL TVK+LRWPTD+FFQRRY CRAMMLETV
Sbjct: 121 TCFRPWETYQADLSIDLHKHHVPTTILDKLALRTVKALRWPTDIFFQRRYACRAMMLETV 180

Query: 168 AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 227
           AAVPGMVGG+LLH KSLRRFEHSGGWI+ALLEEAENERMHLMTFMEVA+P+WYERALV A
Sbjct: 181 AAVPGMVGGVLLHLKSLRRFEHSGGWIRALLEEAENERMHLMTFMEVAQPRWYERALVLA 240

Query: 228 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYW 287
           VQGVFFNAYFLGYL+SPKFAHR+VGYLEEEAIHSYTEFLK++D G I++ PAPAIA DYW
Sbjct: 241 VQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEFLKDIDNGAIQDCPAPAIALDYW 300

Query: 288 RLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           RLP  STL+DVV VVRADEAHHRDVNH+ASD+HYQ  +L+ +PAPLGYH
Sbjct: 301 RLPQGSTLRDVVTVVRADEAHHRDVNHFASDVHYQDLELKTTPAPLGYH 349


>gi|242077034|ref|XP_002448453.1| hypothetical protein SORBIDRAFT_06g027410 [Sorghum bicolor]
 gi|241939636|gb|EES12781.1| hypothetical protein SORBIDRAFT_06g027410 [Sorghum bicolor]
          Length = 331

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/337 (65%), Positives = 257/337 (76%), Gaps = 16/337 (4%)

Query: 1   MMYRGGVRLFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKE 60
           ++   G RLF+      A+      +LAG +N  +   ++R         ST +     E
Sbjct: 10  LLRHAGSRLFTAAAVSPAAASRP--LLAGGSNNGVQAVMLRL-------MSTSSPAAASE 60

Query: 61  QQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAP-KVNKDDGSEWKWNCFRPWEAYEAD 119
            + E       A A+   G+K    I SYWG+E   K+ +DDG+EWKW CFRPWE Y AD
Sbjct: 61  AKDE------AAKASKEGGDKKAVVINSYWGIEQNNKLVRDDGTEWKWTCFRPWETYTAD 114

Query: 120 LSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLL 179
            SIDL +HH P T  DK+A WTVKSLR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLL
Sbjct: 115 TSIDLTRHHEPKTLMDKIAYWTVKSLRFPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLL 174

Query: 180 HCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLG 239
           H +SLRRFE SGGWI+ALLEEAENERMHLMTFMEVAKP+WYERALV  VQGVFFNAYFLG
Sbjct: 175 HLRSLRRFEQSGGWIRALLEEAENERMHLMTFMEVAKPRWYERALVITVQGVFFNAYFLG 234

Query: 240 YLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVV 299
           YL+SPKFAHR+VGYLEEEAIHSYTE+LK+L+ G IENVPAP+IA DYWRLP N+TLKDVV
Sbjct: 235 YLLSPKFAHRVVGYLEEEAIHSYTEYLKDLEAGKIENVPAPSIAIDYWRLPANATLKDVV 294

Query: 300 LVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
            VVRADEAHHRDVNH+ASDIH QG QL++SPAP+GYH
Sbjct: 295 TVVRADEAHHRDVNHFASDIHCQGMQLKQSPAPIGYH 331


>gi|52421168|dbj|BAD51465.1| alternative oxidase [Dracunculus vulgaris]
          Length = 338

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 208/281 (74%), Positives = 241/281 (85%), Gaps = 9/281 (3%)

Query: 65  ENVQTTGAAAAGGSGN---------KDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEA 115
           +  Q  G   AG +G           ++K +VSYWGV   +V+K+DGSEW+W CFRPW+ 
Sbjct: 58  DPAQDGGKKKAGTAGKVPPGEGGGGGEQKAVVSYWGVPPSRVSKEDGSEWRWTCFRPWDT 117

Query: 116 YEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVG 175
           Y+ADLSIDL+KHHAPTT  DK+AL TVK+LRWPTD+FFQRRY CRAMMLETVAAVPGMVG
Sbjct: 118 YQADLSIDLQKHHAPTTILDKLALCTVKALRWPTDIFFQRRYACRAMMLETVAAVPGMVG 177

Query: 176 GMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNA 235
           G++LH KSLRRFEHSGGWI+ALLEEAENERMHLMTFMEVA+P+WYERALV AVQGVFFNA
Sbjct: 178 GVVLHLKSLRRFEHSGGWIRALLEEAENERMHLMTFMEVAQPRWYERALVLAVQGVFFNA 237

Query: 236 YFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTL 295
           YFLGYL+SPKFAHR+VGYLEEEAIHSYTEFLK+++ G I++ PAPAIA DYWRLP  STL
Sbjct: 238 YFLGYLLSPKFAHRVVGYLEEEAIHSYTEFLKDIESGVIQDSPAPAIALDYWRLPQGSTL 297

Query: 296 KDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           +DVV VVRADEAHHRDVNH+ASD+HYQG +L+ +PAPLGYH
Sbjct: 298 RDVVTVVRADEAHHRDVNHFASDVHYQGLELKTTPAPLGYH 338


>gi|162462512|ref|NP_001105180.1| alternative oxidase1 [Zea mays]
 gi|25989199|gb|AAL27796.1| alternative oxidase AOX2 precursor [Zea mays]
 gi|39984776|gb|AAR36136.1| alternative oxidase 1a [Zea mays]
 gi|194707372|gb|ACF87770.1| unknown [Zea mays]
 gi|414585627|tpg|DAA36198.1| TPA: alternative oxidase [Zea mays]
          Length = 329

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 209/267 (78%), Positives = 232/267 (86%), Gaps = 1/267 (0%)

Query: 71  GAAAAGGSGNKDEKRIVSYWGVEAP-KVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHA 129
            A A+   G+K    I SYWG+E   K+ +DDG+EWKW CFRPWE Y AD SIDL +HH 
Sbjct: 63  AAKASKVGGDKKAVVINSYWGIEQNNKLARDDGTEWKWTCFRPWETYTADTSIDLTRHHE 122

Query: 130 PTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEH 189
           P T  DK+A WTVKSLR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLRRFE 
Sbjct: 123 PKTLMDKVAYWTVKSLRFPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEQ 182

Query: 190 SGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHR 249
           SGGWI+ALLEEAENERMHLMTFMEVAKP+WYERALV  VQGVFFNAYFLGYL+SPKFAHR
Sbjct: 183 SGGWIRALLEEAENERMHLMTFMEVAKPRWYERALVITVQGVFFNAYFLGYLLSPKFAHR 242

Query: 250 MVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHH 309
           +VGYLEEEAIHSYTE+LK+L+ G IENVPAPAIA DYWRLP N+TLKDVV VVRADEAHH
Sbjct: 243 VVGYLEEEAIHSYTEYLKDLEAGKIENVPAPAIAIDYWRLPANATLKDVVTVVRADEAHH 302

Query: 310 RDVNHYASDIHYQGRQLRESPAPLGYH 336
           RDVNH+ASDIH QG QL++SPAP+GYH
Sbjct: 303 RDVNHFASDIHCQGMQLKQSPAPIGYH 329


>gi|51860695|gb|AAU11467.1| mitochondrial alternative oxidase 1 [Saccharum officinarum]
          Length = 331

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 224/337 (66%), Positives = 260/337 (77%), Gaps = 16/337 (4%)

Query: 1   MMYRGGVRLFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKE 60
           ++ R G RLF+      A+      +LAG  N      +V+A ++  R  ST +     E
Sbjct: 10  LLRRAGSRLFTAAAVSPAAASRP--LLAGGNN------VVQAVMV--RLMSTSSPAAVSE 59

Query: 61  QQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAP-KVNKDDGSEWKWNCFRPWEAYEAD 119
             ++E      A A+   G+K    I SYWG+E   K+ +DDG+EWKW CFRPWE Y AD
Sbjct: 60  ATKDE-----AAKASKEGGDKKAVVINSYWGIEQNNKLVRDDGTEWKWTCFRPWETYTAD 114

Query: 120 LSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLL 179
            SIDL +HH   T  DK+A WTVKSLR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLL
Sbjct: 115 TSIDLTRHHELKTLMDKIAYWTVKSLRFPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLL 174

Query: 180 HCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLG 239
           H +SLRRFE SGGWI+ALLEEAENERMHLMTFMEVAKP+WYERALV  VQGVFFNAYFLG
Sbjct: 175 HLRSLRRFEQSGGWIRALLEEAENERMHLMTFMEVAKPRWYERALVITVQGVFFNAYFLG 234

Query: 240 YLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVV 299
           YL+SPKFAHR+VGYLEEEAIHSYTE+LK+++ G IENVPAPAIA DYWRLP N+TLKDVV
Sbjct: 235 YLLSPKFAHRVVGYLEEEAIHSYTEYLKDVEAGKIENVPAPAIAIDYWRLPANATLKDVV 294

Query: 300 LVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
            VVRADEAHHRDVNH+ASDIH QG QL++SPAP+GYH
Sbjct: 295 TVVRADEAHHRDVNHFASDIHCQGMQLKQSPAPIGYH 331


>gi|330690264|gb|AEC33278.1| mitochondrial alternative oxidase 1 [Hordeum vulgare subsp.
           spontaneum]
          Length = 328

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 205/275 (74%), Positives = 236/275 (85%), Gaps = 1/275 (0%)

Query: 63  REENVQTTGAAAAGGSGNKDEKRIVSYWGVEA-PKVNKDDGSEWKWNCFRPWEAYEADLS 121
           ++E  +   A AA   G K +  I SYWG++   K+ +DDG+EWKW+CFRPWE Y AD S
Sbjct: 54  KDEAAKVDNAEAAKDEGEKKDVAISSYWGIDQLRKLARDDGTEWKWSCFRPWETYTADTS 113

Query: 122 IDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHC 181
           IDL  HH P T  DK+A +TVKSLR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH 
Sbjct: 114 IDLTTHHMPNTMPDKLAYFTVKSLRFPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHL 173

Query: 182 KSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYL 241
           +SLRRFE SGGWI+ALLEEAENERMHLMTFMEVA+P+WYERALV  VQGVFFNAYF+GYL
Sbjct: 174 RSLRRFEQSGGWIRALLEEAENERMHLMTFMEVAQPRWYERALVIVVQGVFFNAYFIGYL 233

Query: 242 ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLV 301
           +SPKFAHR+VGYLEEEA+HSYTEFLK+LD G IENVPAPAIA DYWRLP N+TLKDVV V
Sbjct: 234 LSPKFAHRVVGYLEEEAVHSYTEFLKDLDDGKIENVPAPAIAIDYWRLPANATLKDVVTV 293

Query: 302 VRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           VRADEAHHRDVNH+ASD++YQG +L+ +PAP+GYH
Sbjct: 294 VRADEAHHRDVNHFASDVYYQGMKLKTAPAPIGYH 328


>gi|195637742|gb|ACG38339.1| transposon protein [Zea mays]
          Length = 329

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 208/267 (77%), Positives = 232/267 (86%), Gaps = 1/267 (0%)

Query: 71  GAAAAGGSGNKDEKRIVSYWGVEAP-KVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHA 129
            A A+   G+K    I SYWG+E   K+ +DDG+EWKW CFRPWE Y AD SIDL +H+ 
Sbjct: 63  AAKASKVGGDKKAVVINSYWGIEQNNKLARDDGTEWKWTCFRPWETYTADTSIDLTRHYE 122

Query: 130 PTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEH 189
           P T  DK+A WTVKSLR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLRRFE 
Sbjct: 123 PKTLMDKVAYWTVKSLRFPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEQ 182

Query: 190 SGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHR 249
           SGGWI+ALLEEAENERMHLMTFMEVAKP+WYERALV  VQGVFFNAYFLGYL+SPKFAHR
Sbjct: 183 SGGWIRALLEEAENERMHLMTFMEVAKPRWYERALVITVQGVFFNAYFLGYLLSPKFAHR 242

Query: 250 MVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHH 309
           +VGYLEEEAIHSYTE+LK+L+ G IENVPAPAIA DYWRLP N+TLKDVV VVRADEAHH
Sbjct: 243 VVGYLEEEAIHSYTEYLKDLEAGKIENVPAPAIAIDYWRLPANATLKDVVTVVRADEAHH 302

Query: 310 RDVNHYASDIHYQGRQLRESPAPLGYH 336
           RDVNH+ASDIH QG QL++SPAP+GYH
Sbjct: 303 RDVNHFASDIHCQGMQLKQSPAPIGYH 329


>gi|225427478|ref|XP_002262811.1| PREDICTED: alternative oxidase 1a, mitochondrial [Vitis vinifera]
 gi|296088484|emb|CBI37475.3| unnamed protein product [Vitis vinifera]
          Length = 320

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/336 (65%), Positives = 256/336 (76%), Gaps = 17/336 (5%)

Query: 1   MMYRGGVRLFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKE 60
           MM R  ++L ST T RT           G+  R           LG+RN S+      ++
Sbjct: 2   MMSRSAMKLLSTATVRTIHG-------GGEFRRGFFA-------LGARNLSSTVSAVREK 47

Query: 61  QQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADL 120
            Q E   ++   AA   S    +K +VSYWGV   K+ K+DG+EWKW+CF+P EAY+AD+
Sbjct: 48  PQTEPGSRS---AAGHSSFEGGDKSVVSYWGVAPVKLTKEDGTEWKWSCFKPSEAYKADV 104

Query: 121 SIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH 180
           SIDL KHH P  +++K+A W VK LR PTD+FF+RR+  RAMMLETVAAVPGMVGGMLLH
Sbjct: 105 SIDLGKHHVPRVWTEKVAYWGVKMLRLPTDIFFKRRFEMRAMMLETVAAVPGMVGGMLLH 164

Query: 181 CKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGY 240
           CKSLRRFEHSGGWI+ LLEEAENERMHLMTFMEVAKP+WYERALVFAVQG+F+N YF+ Y
Sbjct: 165 CKSLRRFEHSGGWIRVLLEEAENERMHLMTFMEVAKPRWYERALVFAVQGIFWNFYFVAY 224

Query: 241 LISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVL 300
           +ISPK AHR VGYLEEEAIHSY EF+KELD GNI NVPAPAIA DYWRL P+STL+DVV+
Sbjct: 225 VISPKVAHRAVGYLEEEAIHSYNEFIKELDSGNIPNVPAPAIAIDYWRLAPDSTLRDVVM 284

Query: 301 VVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           VVRADEAHHRDVNHYASDIHYQG QL+E PAPLGYH
Sbjct: 285 VVRADEAHHRDVNHYASDIHYQGLQLKEFPAPLGYH 320


>gi|82468807|gb|ABB76768.1| alternative oxidase 1a [Solanum tuberosum]
          Length = 355

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/330 (68%), Positives = 250/330 (75%), Gaps = 10/330 (3%)

Query: 6   GVRLFSTLTARTASTE-----AAARILAG----QTNRHLSTFLVRAPILGSRNRSTLALG 56
           G R FST   R          AAA +L G     + +   T++     +GSR+ ST AL 
Sbjct: 18  GPRYFSTTVLRNDPGTGVVGGAAAGLLHGFPANPSEKVAVTWVRHFSAMGSRSASTAALN 77

Query: 57  GEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAY 116
            +K+Q++E + +     A   +     K +VSYWGV   K  K DG+EWKWNCFRPWE Y
Sbjct: 78  -DKQQEKESSDKKVENTATAAANGGAGKSVVSYWGVPPSKATKPDGTEWKWNCFRPWETY 136

Query: 117 EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGG 176
           EAD+SIDL KHHAP TF DK A WTVK LR+PTD+FFQRRYGCRAMMLETVAAVPGMVGG
Sbjct: 137 EADMSIDLTKHHAPVTFLDKFAYWTVKVLRFPTDVFFQRRYGCRAMMLETVAAVPGMVGG 196

Query: 177 MLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAY 236
           MLLHCKSLRRFE SGGWIKALLEEAENERMHLMTFMEVAKP  YERALVF VQGVFFNAY
Sbjct: 197 MLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPNVYERALVFTVQGVFFNAY 256

Query: 237 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLK 296
           F  YLISPK AHR+VGYLEEEA+HSYTEFLKELD GNIENVPAPAIA DYWRLP ++TL+
Sbjct: 257 FAAYLISPKLAHRIVGYLEEEAVHSYTEFLKELDNGNIENVPAPAIAIDYWRLPKDATLR 316

Query: 297 DVVLVVRADEAHHRDVNHYASDIHYQGRQL 326
           DVVLVVRADEAHHRDVNHYAS   Y+   L
Sbjct: 317 DVVLVVRADEAHHRDVNHYASVRTYKADDL 346


>gi|115460316|ref|NP_001053758.1| Os04g0600200 [Oryza sativa Japonica Group]
 gi|3218544|dbj|BAA28772.1| alternative oxidase [Oryza sativa Japonica Group]
 gi|3218546|dbj|BAA28773.1| alternative oxidase [Oryza sativa Japonica Group]
 gi|6467126|dbj|BAA86963.1| alternative oxidase [Oryza sativa (japonica cultivar-group)]
 gi|38345773|emb|CAD41813.2| OSJNBa0083N12.11 [Oryza sativa Japonica Group]
 gi|113565329|dbj|BAF15672.1| Os04g0600200 [Oryza sativa Japonica Group]
 gi|116310914|emb|CAH67852.1| B0403H10-OSIGBa0105A11.4 [Oryza sativa Indica Group]
 gi|125549592|gb|EAY95414.1| hypothetical protein OsI_17254 [Oryza sativa Indica Group]
 gi|125591517|gb|EAZ31867.1| hypothetical protein OsJ_16032 [Oryza sativa Japonica Group]
 gi|215693779|dbj|BAG88978.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 332

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 202/250 (80%), Positives = 226/250 (90%), Gaps = 1/250 (0%)

Query: 88  SYWGVE-APKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLR 146
           SYWG+E + K+ ++DG+EWKW+CFRPWE Y AD SIDL KHH P T  DK+A WTVKSLR
Sbjct: 83  SYWGIEQSKKLVREDGTEWKWSCFRPWETYTADTSIDLTKHHVPKTLLDKIAYWTVKSLR 142

Query: 147 WPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERM 206
           +PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLRRFE SGGWI+ LLEEAENERM
Sbjct: 143 FPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEQSGGWIRTLLEEAENERM 202

Query: 207 HLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFL 266
           HLMTFMEVA PKWYERALV  VQGVFFNAYFLGYL+SPKFAHR+VGYLEEEAIHSYTEFL
Sbjct: 203 HLMTFMEVANPKWYERALVITVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEFL 262

Query: 267 KELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQL 326
           K+L+ G I+NVPAPAIA DYWRLP N+TLKDVV VVRADEAHHRDVNH+ASDIHYQG +L
Sbjct: 263 KDLEAGKIDNVPAPAIAIDYWRLPANATLKDVVTVVRADEAHHRDVNHFASDIHYQGMEL 322

Query: 327 RESPAPLGYH 336
           +++PAP+GYH
Sbjct: 323 KQTPAPIGYH 332


>gi|357165610|ref|XP_003580438.1| PREDICTED: alternative oxidase 1a, mitochondrial-like [Brachypodium
           distachyon]
          Length = 333

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 202/259 (77%), Positives = 231/259 (89%), Gaps = 1/259 (0%)

Query: 79  GNKDEKRIVSYWGVE-APKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKM 137
           G K E  + SYWG+E A K+ ++DG+EWKW+CFRPWE Y AD SIDL KHH P T  DK+
Sbjct: 75  GEKKEVVVNSYWGIEQAKKLVREDGTEWKWSCFRPWETYTADTSIDLTKHHVPKTMLDKI 134

Query: 138 ALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKAL 197
           A WTVKSLR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLRRFE SGGWI+AL
Sbjct: 135 AYWTVKSLRFPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEQSGGWIRAL 194

Query: 198 LEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEE 257
           LEEAENERMHLMTFMEVA+P+WYERALV AVQGVFFNAYF GYLISPKFAHR+VGYLEEE
Sbjct: 195 LEEAENERMHLMTFMEVAQPRWYERALVIAVQGVFFNAYFFGYLISPKFAHRVVGYLEEE 254

Query: 258 AIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYAS 317
           A+HSYTEFLK+L+ G I++VPAP+IA DYWRLP N+TLKDVV VVRADEAHHRDVNH+AS
Sbjct: 255 AVHSYTEFLKDLEAGKIDDVPAPSIAIDYWRLPANATLKDVVTVVRADEAHHRDVNHFAS 314

Query: 318 DIHYQGRQLRESPAPLGYH 336
           D++YQG +L+ +PAP+GYH
Sbjct: 315 DVYYQGMELKATPAPIGYH 333


>gi|242062814|ref|XP_002452696.1| hypothetical protein SORBIDRAFT_04g030820 [Sorghum bicolor]
 gi|241932527|gb|EES05672.1| hypothetical protein SORBIDRAFT_04g030820 [Sorghum bicolor]
          Length = 346

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 205/260 (78%), Positives = 229/260 (88%), Gaps = 1/260 (0%)

Query: 77  GSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDK 136
           G G KD K + SYWGV   K+   DG EW+W+CFRPWEAY+ D SIDL +HH P    DK
Sbjct: 88  GDGKKD-KVVSSYWGVAPSKLMSKDGVEWRWSCFRPWEAYKPDTSIDLTRHHEPKVLLDK 146

Query: 137 MALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKA 196
           +A WTVK LR PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLRRFEHSGGWI+A
Sbjct: 147 IAYWTVKLLRVPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRA 206

Query: 197 LLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEE 256
           LLEEAENERMHLMTFMEVAKPKWYERALV AVQGVFFNAYFLGYLISPKFAHR+VGYLEE
Sbjct: 207 LLEEAENERMHLMTFMEVAKPKWYERALVLAVQGVFFNAYFLGYLISPKFAHRVVGYLEE 266

Query: 257 EAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYA 316
           EAIHSYTE+LK+L+ G IENVPAPAIA DYW+LP ++TLKDVV+VVR+DEAHHRDVNH+A
Sbjct: 267 EAIHSYTEYLKDLEAGKIENVPAPAIAIDYWQLPADATLKDVVVVVRSDEAHHRDVNHFA 326

Query: 317 SDIHYQGRQLRESPAPLGYH 336
           SDIH+QG QL+E+PAP+ YH
Sbjct: 327 SDIHFQGMQLKETPAPIEYH 346


>gi|162462383|ref|NP_001105179.1| alternative oxidase AOX1 precursor [Zea mays]
 gi|25989197|gb|AAL27795.1| alternative oxidase AOX1 precursor [Zea mays]
 gi|194690594|gb|ACF79381.1| unknown [Zea mays]
 gi|194703950|gb|ACF86059.1| unknown [Zea mays]
 gi|223974129|gb|ACN31252.1| unknown [Zea mays]
 gi|238011470|gb|ACR36770.1| unknown [Zea mays]
 gi|413938400|gb|AFW72951.1| hypothetical protein ZEAMMB73_439635 [Zea mays]
          Length = 347

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 203/260 (78%), Positives = 230/260 (88%), Gaps = 1/260 (0%)

Query: 77  GSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDK 136
           G G +D K + SYWGV   K+   DG+EW+W+CFRPWEAY+ D +IDL +HH P    DK
Sbjct: 89  GDGKRD-KVVSSYWGVAPSKLMNKDGAEWRWSCFRPWEAYKPDTTIDLNRHHEPKVLLDK 147

Query: 137 MALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKA 196
           +A WTVK LR PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLRRFEHSGGWI+A
Sbjct: 148 IAYWTVKLLRVPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRA 207

Query: 197 LLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEE 256
           LLEEAENERMHLMTFMEVAKPKWYERALV AVQGVFFNAYFLGYLISPKFAHR+VGYLEE
Sbjct: 208 LLEEAENERMHLMTFMEVAKPKWYERALVLAVQGVFFNAYFLGYLISPKFAHRVVGYLEE 267

Query: 257 EAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYA 316
           EAIHSYTE+LK+L+ G IENVPAPAIA DYW+LP ++TLKDVV+VVR+DEAHHRDVNH+A
Sbjct: 268 EAIHSYTEYLKDLEAGKIENVPAPAIAIDYWQLPADATLKDVVVVVRSDEAHHRDVNHFA 327

Query: 317 SDIHYQGRQLRESPAPLGYH 336
           SDIH+QG QL+E+PAP+ YH
Sbjct: 328 SDIHFQGMQLKETPAPIEYH 347


>gi|125539183|gb|EAY85578.1| hypothetical protein OsI_06950 [Oryza sativa Indica Group]
          Length = 339

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 212/330 (64%), Positives = 247/330 (74%), Gaps = 8/330 (2%)

Query: 8   RLFSTLTARTASTEAAARILAGQTNRHLSTF-LVRAPILGSRNRSTLALGGEKEQQREEN 66
           RLFST +   A     A +        +S+  +V A     R   T A+GG        +
Sbjct: 17  RLFSTASVAAAGRSPVAGLPKALPQPAISSLWMVGAAAPPRRFAGTAAVGGV-------D 69

Query: 67  VQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKK 126
           V    A        + EK   SYWGV   ++ K+DG+ WKW+CFRPW+ YEAD++IDL K
Sbjct: 70  VTAPTATPPPAKKEESEKEAASYWGVAPTRLVKEDGTVWKWSCFRPWDTYEADVAIDLTK 129

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 186
           HH P T  DK+A WTVKSLRWP DLFFQRRYGCRAMMLETVAAVPGMV G +LH +SLRR
Sbjct: 130 HHNPATLGDKVARWTVKSLRWPVDLFFQRRYGCRAMMLETVAAVPGMVAGAVLHLRSLRR 189

Query: 187 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 246
           FEHSGGWI+ALLEEAENERMHLMTFMEV++P+WYERALV AVQG FFNAY   YL+SP+F
Sbjct: 190 FEHSGGWIRALLEEAENERMHLMTFMEVSQPRWYERALVVAVQGAFFNAYLASYLLSPRF 249

Query: 247 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 306
           AHR+VGYLEEEA+HSYTEFL++LD G I++VPAPAIA DYWRLP ++TL+DVV+VVRADE
Sbjct: 250 AHRIVGYLEEEAVHSYTEFLRDLDAGKIDDVPAPAIAIDYWRLPADATLRDVVMVVRADE 309

Query: 307 AHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           AHHRDVNHYASDIHYQG  LRE  APLGYH
Sbjct: 310 AHHRDVNHYASDIHYQGHALREVAAPLGYH 339


>gi|5802557|gb|AAD51707.1| alternative oxidase [Triticum aestivum]
          Length = 274

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 201/252 (79%), Positives = 227/252 (90%), Gaps = 1/252 (0%)

Query: 86  IVSYWGVE-APKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 144
           I SYWG+E + K+ ++DG+EWKW+CFRPWE Y AD SID  KHH P T  DK+A +TVKS
Sbjct: 23  ISSYWGIEQSKKLVREDGTEWKWSCFRPWETYTADTSIDPTKHHVPNTMLDKIAYYTVKS 82

Query: 145 LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 204
           LR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLRRFE SGGWI+ALLEEAENE
Sbjct: 83  LRFPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEQSGGWIRALLEEAENE 142

Query: 205 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 264
           RMHLMTFMEVA+P+WYERALV AVQGVFFNAYF GYLISPKFAHR+VGYLEEEA+HSYTE
Sbjct: 143 RMHLMTFMEVAQPRWYERALVIAVQGVFFNAYFFGYLISPKFAHRVVGYLEEEAVHSYTE 202

Query: 265 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 324
           FLK+LD G I+NVPAPAIA DYWRLP N+TLKDVV VVRADEAHHRDVNH+ASD++YQG 
Sbjct: 203 FLKDLDDGKIDNVPAPAIAIDYWRLPANATLKDVVTVVRADEAHHRDVNHFASDVYYQGM 262

Query: 325 QLRESPAPLGYH 336
           QL+ +PAP+GYH
Sbjct: 263 QLKATPAPIGYH 274


>gi|50251730|dbj|BAD27650.1| putative alternative oxidase 1 [Oryza sativa Japonica Group]
          Length = 339

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 212/330 (64%), Positives = 247/330 (74%), Gaps = 8/330 (2%)

Query: 8   RLFSTLTARTASTEAAARILAGQTNRHLSTF-LVRAPILGSRNRSTLALGGEKEQQREEN 66
           RLFST +   A     A +        +S+  +V A     R   T A+GG        +
Sbjct: 17  RLFSTASVAAAGRSPVAGLPKALPRPAISSLWMVGAAAPPRRFAGTAAVGGV-------D 69

Query: 67  VQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKK 126
           V    A        + EK   SYWGV   ++ K+DG+ WKW+CFRPW+ YEAD++IDL K
Sbjct: 70  VTAPTATPPPAKKEESEKEAASYWGVAPTRLVKEDGTVWKWSCFRPWDTYEADVAIDLTK 129

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 186
           HH P T  DK+A WTVKSLRWP DLFFQRRYGCRAMMLETVAAVPGMV G +LH +SLRR
Sbjct: 130 HHNPATLGDKVARWTVKSLRWPVDLFFQRRYGCRAMMLETVAAVPGMVAGAVLHLRSLRR 189

Query: 187 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 246
           FEHSGGWI+ALLEEAENERMHLMTFMEV++P+WYERALV AVQG FFNAY   YL+SP+F
Sbjct: 190 FEHSGGWIRALLEEAENERMHLMTFMEVSQPRWYERALVVAVQGAFFNAYLASYLLSPRF 249

Query: 247 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 306
           AHR+VGYLEEEA+HSYTEFL++LD G I++VPAPAIA DYWRLP ++TL+DVV+VVRADE
Sbjct: 250 AHRIVGYLEEEAVHSYTEFLRDLDAGKIDDVPAPAIAIDYWRLPADATLRDVVMVVRADE 309

Query: 307 AHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           AHHRDVNHYASDIHYQG  LRE  APLGYH
Sbjct: 310 AHHRDVNHYASDIHYQGHALREVAAPLGYH 339


>gi|242077038|ref|XP_002448455.1| hypothetical protein SORBIDRAFT_06g027430 [Sorghum bicolor]
 gi|241939638|gb|EES12783.1| hypothetical protein SORBIDRAFT_06g027430 [Sorghum bicolor]
          Length = 332

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/340 (64%), Positives = 259/340 (76%), Gaps = 21/340 (6%)

Query: 5   GGVRLFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKEQQRE 64
            G  +   L  R  + E AA  ++G T R +     R  +L +R  ST A     E  RE
Sbjct: 6   AGAAVLRHLGPRLFAAEQAA--VSGLTARGVMPAAAR--LLPARMASTAA-----EAARE 56

Query: 65  ENVQTTGAAAAGGSGNKDE--------KRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAY 116
           +     GA   GG+G ++E        K IVSYWG+EAPK+ K+DG+EWKW  FRPW+AY
Sbjct: 57  D----AGAKQHGGTGKQEEAAGGGQSKKAIVSYWGIEAPKLVKEDGTEWKWTSFRPWDAY 112

Query: 117 EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGG 176
            +D SID+KKHHAPTT  DK A   VKSLR P DLFFQRR+   A++LETVAAVPGMVGG
Sbjct: 113 TSDTSIDVKKHHAPTTLPDKAAYLIVKSLRVPMDLFFQRRHASHALLLETVAAVPGMVGG 172

Query: 177 MLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAY 236
           MLLH +SLRRFEHSGGWI+ALLEEAENERMHLMTF+EV +PKW+ERALV A QGVFFNAY
Sbjct: 173 MLLHLRSLRRFEHSGGWIRALLEEAENERMHLMTFLEVTQPKWWERALVLATQGVFFNAY 232

Query: 237 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLK 296
           F+GYL+SPKFAHR+VGYLEEEA++SYTE+LK+L+ G IEN PAPAIA DYWRLP ++ LK
Sbjct: 233 FVGYLLSPKFAHRVVGYLEEEAVYSYTEYLKDLEAGIIENTPAPAIAIDYWRLPADAKLK 292

Query: 297 DVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           DVV VVRADEAHHRDVNH+ASDIHYQG +LR++PAPLGYH
Sbjct: 293 DVVTVVRADEAHHRDVNHFASDIHYQGMKLRDTPAPLGYH 332


>gi|357484587|ref|XP_003612581.1| Alternative oxidase [Medicago truncatula]
 gi|355513916|gb|AES95539.1| Alternative oxidase [Medicago truncatula]
          Length = 262

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 202/225 (89%), Positives = 213/225 (94%)

Query: 112 PWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVP 171
           PWE Y+AD++IDL KHH PTTF DKMA WTVKSLRWPTD+FFQRRYGCRAMMLETVAAVP
Sbjct: 38  PWETYKADVTIDLTKHHKPTTFLDKMAYWTVKSLRWPTDIFFQRRYGCRAMMLETVAAVP 97

Query: 172 GMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGV 231
           GMVGGMLLHCKSLRRFE SGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV  VQGV
Sbjct: 98  GMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVITVQGV 157

Query: 232 FFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPP 291
           FFNAYFLGYL+SPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA DYW+LP 
Sbjct: 158 FFNAYFLGYLLSPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWQLPQ 217

Query: 292 NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           NSTL+DVV VVRADEAHHRDVNH+ASDIHYQGR+LRE+ AP+GYH
Sbjct: 218 NSTLRDVVEVVRADEAHHRDVNHFASDIHYQGRELREAAAPIGYH 262


>gi|350539127|ref|NP_001234120.1| alternative oxidase 1b [Solanum lycopersicum]
 gi|29465624|gb|AAK58483.1| alternative oxidase 1b [Solanum lycopersicum]
          Length = 318

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/315 (65%), Positives = 253/315 (80%), Gaps = 2/315 (0%)

Query: 23  AARILAGQTNRHL-STFLVRAPILGSRNRSTLALGGEKEQQREENVQTTGAAAAGGSGNK 81
           AA  ++G   R L   FL R  ++  R+ S +    + +++++ + Q +   A   +G+K
Sbjct: 5   AAMKISGLLMRQLRGEFLPRGGMVQIRHWSNMNTSSKTKEEQKTHNQPSHTDATNAAGDK 64

Query: 82  DEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWT 141
             K+IVSYWGV+ PK++K+DG+ WKWN FRPWE Y AD+SID++KHH PT F DK A WT
Sbjct: 65  -AKKIVSYWGVDPPKISKEDGTPWKWNSFRPWETYSADISIDVEKHHMPTNFMDKFAYWT 123

Query: 142 VKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEA 201
           V+SL++PT LFFQRR+ C AM+LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEA
Sbjct: 124 VQSLKYPTYLFFQRRHMCHAMLLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEA 183

Query: 202 ENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHS 261
           ENERMHLMTF+E++ PKWYERALVFAVQGVF NAYF+ YL SPK AHR+VGYLEEEA++S
Sbjct: 184 ENERMHLMTFIELSNPKWYERALVFAVQGVFVNAYFIAYLASPKLAHRIVGYLEEEAVNS 243

Query: 262 YTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHY 321
           YTEFL +++KG  EN PAPAIA DYWRLP ++TLKDVV V+RADEAHHRD+NH+ASDI  
Sbjct: 244 YTEFLIDIEKGLFENSPAPAIAIDYWRLPADATLKDVVTVIRADEAHHRDLNHFASDIQC 303

Query: 322 QGRQLRESPAPLGYH 336
           QG +L+  PAP+GYH
Sbjct: 304 QGHELKGYPAPIGYH 318


>gi|224074535|ref|XP_002304386.1| predicted protein [Populus trichocarpa]
 gi|222841818|gb|EEE79365.1| predicted protein [Populus trichocarpa]
          Length = 253

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 196/253 (77%), Positives = 225/253 (88%)

Query: 84  KRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVK 143
           K IVSYWGV  PK+ K+DG+ WKWNCFRPWE+Y+ D+SID+KKHH P T  DK A WTV+
Sbjct: 1   KAIVSYWGVTPPKITKEDGTAWKWNCFRPWESYKPDISIDVKKHHKPGTTMDKFAYWTVQ 60

Query: 144 SLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAEN 203
            L++PT LFFQRR+ C AM+LETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAEN
Sbjct: 61  VLKYPTYLFFQRRHMCHAMLLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAEN 120

Query: 204 ERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYT 263
           ERMHLMTF+E+AKP+WYERALVFAVQG FFNAYFL YL SPK AHR+VGYLEEEA++SY+
Sbjct: 121 ERMHLMTFVEIAKPQWYERALVFAVQGAFFNAYFLAYLASPKLAHRIVGYLEEEAVNSYS 180

Query: 264 EFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQG 323
           EFL++LD GN ENVPAPAIA DYWRLPPNSTL+DVV V+RADEAHHRD+NHYASDI  QG
Sbjct: 181 EFLEDLDNGNFENVPAPAIAIDYWRLPPNSTLRDVVFVIRADEAHHRDLNHYASDIQCQG 240

Query: 324 RQLRESPAPLGYH 336
           ++L+ +PAP+GYH
Sbjct: 241 QELKHTPAPIGYH 253


>gi|6967043|emb|CAB72441.1| alternative oxidase [Populus tremula x Populus tremuloides]
          Length = 294

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 199/264 (75%), Positives = 229/264 (86%)

Query: 73  AAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTT 132
           AAA     +D K IVSYWGV  PK+ K+DG+ WKWNCFRPWE+Y+ D+SID+KKHH P T
Sbjct: 31  AAANSFTTEDGKAIVSYWGVSPPKITKEDGTAWKWNCFRPWESYKPDISIDVKKHHKPGT 90

Query: 133 FSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGG 192
             DK A WTV+ L++PT LFFQRR+ C AM+LETVAAVPGMVGGMLLH KSLRRFE SGG
Sbjct: 91  TMDKFAYWTVQVLKYPTYLFFQRRHMCHAMLLETVAAVPGMVGGMLLHFKSLRRFEQSGG 150

Query: 193 WIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVG 252
           WIKALLEEAENERMHLMTF+E+AKP+WYERALVFAVQGVFFNAYFL YL SPK AHR+VG
Sbjct: 151 WIKALLEEAENERMHLMTFVEIAKPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIVG 210

Query: 253 YLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDV 312
           YLEEEA++SY+EFL++LD  + ENVPAPAIA DYWRLPPNSTL+DVV V+RADEAHHRD+
Sbjct: 211 YLEEEAVNSYSEFLEDLDNCSFENVPAPAIAIDYWRLPPNSTLRDVVFVIRADEAHHRDL 270

Query: 313 NHYASDIHYQGRQLRESPAPLGYH 336
           NHYASDI  QG++LR +PAP+GYH
Sbjct: 271 NHYASDIQCQGQELRYTPAPIGYH 294


>gi|115448119|ref|NP_001047839.1| Os02g0700400 [Oryza sativa Japonica Group]
 gi|16902306|dbj|BAB71944.1| alternative oxidase 1c [Oryza sativa Japonica Group]
 gi|16902308|dbj|BAB71945.1| alternative oxidase 1c [Oryza sativa Japonica Group]
 gi|41052670|dbj|BAD07517.1| alternative oxidase 1c [Oryza sativa Japonica Group]
 gi|41052978|dbj|BAD07888.1| alternative oxidase 1c [Oryza sativa Japonica Group]
 gi|113537370|dbj|BAF09753.1| Os02g0700400 [Oryza sativa Japonica Group]
 gi|125540792|gb|EAY87187.1| hypothetical protein OsI_08589 [Oryza sativa Indica Group]
          Length = 345

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 197/249 (79%), Positives = 220/249 (88%)

Query: 88  SYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRW 147
           SYWG+EA K+   DG EWKW+CFRPWE Y  D +IDLKKHH P    DK+A WTVK+LR 
Sbjct: 97  SYWGIEASKLASKDGVEWKWSCFRPWETYSPDTTIDLKKHHEPKVLLDKVAYWTVKALRV 156

Query: 148 PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMH 207
           PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLRRFEHSGGWI+ALLEEAENERMH
Sbjct: 157 PTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRALLEEAENERMH 216

Query: 208 LMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLK 267
           LMTFMEVAKP+WYERALV AVQGVFFNAYFLGYL+SPK AHR+VGYLEEEAIHSYTE+LK
Sbjct: 217 LMTFMEVAKPRWYERALVLAVQGVFFNAYFLGYLLSPKLAHRVVGYLEEEAIHSYTEYLK 276

Query: 268 ELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLR 327
           +++ G IENVPAP IA DYWRLP  +TLKDVV+VVRADEAHHRDVNH+ASD+H+QG  L+
Sbjct: 277 DIEAGKIENVPAPPIAIDYWRLPAGATLKDVVVVVRADEAHHRDVNHFASDVHFQGMDLK 336

Query: 328 ESPAPLGYH 336
           + PAPL YH
Sbjct: 337 DIPAPLDYH 345


>gi|51860701|gb|AAU11470.1| mitochondrial alternative oxidase 1d [Saccharum officinarum]
          Length = 286

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 200/276 (72%), Positives = 234/276 (84%), Gaps = 7/276 (2%)

Query: 68  QTTGAAAAGGSGNKDE-------KRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADL 120
           +  GA   GG+G ++E       K IVSYWG+E PK+ K+DG+EWKW CFRPW+AY +D 
Sbjct: 11  EDAGAKQHGGTGKREEAANGQSKKAIVSYWGIEPPKLVKEDGTEWKWPCFRPWDAYTSDT 70

Query: 121 SIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH 180
           SID+KKHHAPTT  DK A   VKSLR P DLFFQRR+   A++LETVAAVPGMVGGMLLH
Sbjct: 71  SIDVKKHHAPTTLPDKAAYLIVKSLRVPMDLFFQRRHASHALLLETVAAVPGMVGGMLLH 130

Query: 181 CKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGY 240
            +SLRRFEHSGGW++ALLEEAENERMHLMTF+EV +P+W+ERALV A QGVFFNAYF+GY
Sbjct: 131 LRSLRRFEHSGGWVRALLEEAENERMHLMTFLEVTQPRWWERALVLATQGVFFNAYFVGY 190

Query: 241 LISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVL 300
           L+SPKFAHR+VGYLEEEA+HSYTE+LK+L+ G IEN PAPAIA DYWRLP ++ LKDVV 
Sbjct: 191 LLSPKFAHRVVGYLEEEAVHSYTEYLKDLEAGIIENSPAPAIAIDYWRLPADAKLKDVVT 250

Query: 301 VVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           VVRADEAHHRDVNH+ASDIHYQG +LR++PAPLGYH
Sbjct: 251 VVRADEAHHRDVNHFASDIHYQGMKLRDTPAPLGYH 286


>gi|225427480|ref|XP_002262982.1| PREDICTED: alternative oxidase 3, mitochondrial [Vitis vinifera]
 gi|296088482|emb|CBI37473.3| unnamed protein product [Vitis vinifera]
          Length = 322

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/292 (69%), Positives = 238/292 (81%), Gaps = 7/292 (2%)

Query: 45  LGSRNRSTLALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSE 104
           + +R +STLA G  KE++  +  +T       GS N ++K IVSYWGV    + K+DGS 
Sbjct: 38  MPAREQSTLASGDAKEEKPIQVPKT-------GSENGEQKAIVSYWGVPPANLTKEDGSP 90

Query: 105 WKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMML 164
           WKW+CFRPWE Y+AD+SID++KHH P  F DK A WTV++L+ PT +FFQR++ C AM+L
Sbjct: 91  WKWHCFRPWETYKADISIDVEKHHKPVKFMDKFAYWTVQALKIPTHMFFQRKHMCHAMLL 150

Query: 165 ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERAL 224
           ETVAAVPGMVGGMLLHC+S RRFE SGGWIKALLEEAENERMHLMTF+E+AKP+WYERA+
Sbjct: 151 ETVAAVPGMVGGMLLHCQSPRRFEQSGGWIKALLEEAENERMHLMTFIELAKPQWYERAI 210

Query: 225 VFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAT 284
           VFAVQGVFFNAYFL YL SPK AHR+ GYLEEEA+ SYTEFLK+LD G+ ENVPAPAIA 
Sbjct: 211 VFAVQGVFFNAYFLTYLASPKVAHRITGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAI 270

Query: 285 DYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           DYWRLP  STL+DVV V+RADEAHHRDVNHYASDI  QG Q ++ PAPLGYH
Sbjct: 271 DYWRLPAESTLRDVVEVIRADEAHHRDVNHYASDIQCQGHQFKDVPAPLGYH 322


>gi|147782375|emb|CAN70584.1| hypothetical protein VITISV_001908 [Vitis vinifera]
          Length = 285

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/292 (69%), Positives = 238/292 (81%), Gaps = 7/292 (2%)

Query: 45  LGSRNRSTLALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSE 104
           + +R +STLA G  KE++  +  +T       GS N ++K IVSYWGV    + K+DGS 
Sbjct: 1   MPAREQSTLASGDAKEEKPIQVPKT-------GSENGEQKAIVSYWGVPPANLTKEDGSP 53

Query: 105 WKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMML 164
           WKW+CFRPWE Y+AD+SID++KHH P  F DK A WTV++L+ PT +FFQR++ C AM+L
Sbjct: 54  WKWHCFRPWETYKADISIDVEKHHKPVKFMDKFAYWTVQALKIPTHMFFQRKHMCHAMLL 113

Query: 165 ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERAL 224
           ETVAAVPGMVGGMLLHC+S RRFE SGGWIKALLEEAENERMHLMTF+E+AKP+WYERAJ
Sbjct: 114 ETVAAVPGMVGGMLLHCQSXRRFEQSGGWIKALLEEAENERMHLMTFIELAKPQWYERAJ 173

Query: 225 VFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAT 284
           VFAVQGVFFNAYFL YL SPK AHR+ GYLEEEA+ SYTEFLK+LD G+ ENVPAPAIA 
Sbjct: 174 VFAVQGVFFNAYFLTYLASPKVAHRITGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAI 233

Query: 285 DYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           DYWRLP  STL+DVV V+RADEAHHRDVNHYASDI  QG Q ++ PAPLGYH
Sbjct: 234 DYWRLPAESTLRDVVEVIRADEAHHRDVNHYASDIQCQGHQFKDVPAPLGYH 285


>gi|357137162|ref|XP_003570170.1| PREDICTED: alternative oxidase 1a, mitochondrial-like [Brachypodium
           distachyon]
          Length = 343

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 199/257 (77%), Positives = 229/257 (89%)

Query: 80  NKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMAL 139
           + D+  + SYWG+   K+   DG+EWKW+CFRPWEAY +D +IDLKKHH P    DK+A 
Sbjct: 87  DGDKTVVSSYWGIVPAKLVNKDGAEWKWSCFRPWEAYTSDTTIDLKKHHEPKVLLDKIAY 146

Query: 140 WTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLE 199
           WTVKSLR PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLRRFEHSGGWI+ALLE
Sbjct: 147 WTVKSLRVPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRALLE 206

Query: 200 EAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAI 259
           EAENERMHLMTFMEVA PKWYERALV AVQGVFFNAYFLGYL+SPKFAHR+VGYLEEEA+
Sbjct: 207 EAENERMHLMTFMEVAGPKWYERALVLAVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAV 266

Query: 260 HSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
           HSYTEFL++++ G I+NVPAP IA DYWRLPP++TL+DVV+VVRADEAHHRDVNH+ASDI
Sbjct: 267 HSYTEFLRDIEAGKIDNVPAPRIAIDYWRLPPDATLRDVVVVVRADEAHHRDVNHFASDI 326

Query: 320 HYQGRQLRESPAPLGYH 336
           H+QG +L ++PAPLGYH
Sbjct: 327 HFQGLELNKTPAPLGYH 343


>gi|90959751|dbj|BAE92716.1| Alternative Oxidase [Solanum tuberosum]
          Length = 337

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/317 (68%), Positives = 242/317 (76%), Gaps = 10/317 (3%)

Query: 6   GVRLFSTLTARTASTE-----AAARILAG----QTNRHLSTFLVRAPILGSRNRSTLALG 56
           G R FST   R          AAA +L G     + +   T++     +GSR+ ST AL 
Sbjct: 18  GPRYFSTTVLRNDPGTGVVGGAAAGLLHGFPANPSEKVAVTWVRHFSAMGSRSASTAALN 77

Query: 57  GEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAY 116
            +K+Q++E + +     A   +     K +VSYWGV   K  K DG+EWKWNCFRPWE Y
Sbjct: 78  -DKQQEKESSDKKVENTATAAANGGAGKSVVSYWGVPPSKATKPDGTEWKWNCFRPWETY 136

Query: 117 EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGG 176
           EAD+SIDL KHHAP TF DK A WTVK LR+PTD+FFQRRYGCRAMMLETVAAVPGMVGG
Sbjct: 137 EADMSIDLTKHHAPVTFLDKFAYWTVKVLRFPTDVFFQRRYGCRAMMLETVAAVPGMVGG 196

Query: 177 MLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAY 236
           MLLHCKSLRRFE SGGWIKALLEEAENERMHLMTFMEVAKP  YERALVFAVQGVFFNAY
Sbjct: 197 MLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPNVYERALVFAVQGVFFNAY 256

Query: 237 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLK 296
           F  YLISPK AHR+VGYLEEEA+HSYTEFLKELD GNIENVPAPAIA DYWRLP ++TL+
Sbjct: 257 FAAYLISPKLAHRIVGYLEEEAVHSYTEFLKELDNGNIENVPAPAIAIDYWRLPKDATLR 316

Query: 297 DVVLVVRADEAHHRDVN 313
           DVVLVVRADEAHHR+  
Sbjct: 317 DVVLVVRADEAHHRECQ 333


>gi|225571963|gb|ABZ81230.2| mitochondrial alternative oxidase 2b [Daucus carota]
          Length = 319

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 200/316 (63%), Positives = 246/316 (77%), Gaps = 5/316 (1%)

Query: 22  AAARILAGQTNRHLSTFLVRAPI-LGSRNRSTLALGGEKEQQREENVQTTGAAAAGGSGN 80
           +  R L       +STF     I + +R R  +  GG     R    +   AA    +  
Sbjct: 8   SVIRRLINSQKSPMSTFRSHDDIAIANRQRPGIIGGG----ARVLGTRMMSAAGENEAAK 63

Query: 81  KDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALW 140
           +++  + SYWGV  PKV ++DGS+W WNCF PWE Y+AD+SIDL KHH P  F DKMA  
Sbjct: 64  ENKVSVTSYWGVARPKVKREDGSDWPWNCFMPWETYQADVSIDLNKHHKPKGFLDKMAYK 123

Query: 141 TVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEE 200
           TVK LR PTD+ F+RRYGCRAMMLETVAAVPGMVGGMLLH KSLR+F+HSGGWIKALLEE
Sbjct: 124 TVKLLRLPTDILFKRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEE 183

Query: 201 AENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 260
           AENERMHLMT +E+ +PKW+ER LV AVQGVFFNA+F+ Y++SPK AHR+VGYLEEEAIH
Sbjct: 184 AENERMHLMTMVELVQPKWHERLLVLAVQGVFFNAFFVLYILSPKLAHRIVGYLEEEAIH 243

Query: 261 SYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIH 320
           SYTE+LK++D+G IENVPAPAI+ DYWRLP ++ L+DV+LV+RADEAHHRDVNH+ASDIH
Sbjct: 244 SYTEYLKDIDRGLIENVPAPAISIDYWRLPQDAKLRDVILVIRADEAHHRDVNHFASDIH 303

Query: 321 YQGRQLRESPAPLGYH 336
           ++G++LR++PAPLGYH
Sbjct: 304 FEGKELRDAPAPLGYH 319


>gi|171198301|gb|ACB45425.1| mitochondrial alternative oxidase 2 [Vitis vinifera]
          Length = 320

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 199/319 (62%), Positives = 245/319 (76%), Gaps = 14/319 (4%)

Query: 32  NRHLSTFLVRAPILGSRNRSTLALGGEKEQQREENV---QTTGAAAAGGSGNKDEKRI-- 86
           N+ ++  L+R  I G++   ++     + + R+E     +      A    N+ EK +  
Sbjct: 2   NQLVARSLMRGLINGAKCNRSILCSVTRVELRDEKAAFGRMMSTETALAEKNQKEKSVEE 61

Query: 87  ---------VSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKM 137
                     SYWG++ PK+ ++DGS W WNCF PWE Y AD +IDL KHH P TF+DK+
Sbjct: 62  VEKQSKVVFSSYWGIQRPKITREDGSPWPWNCFMPWETYHADTAIDLSKHHVPKTFADKV 121

Query: 138 ALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKAL 197
           A  TVK LR PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLR+FEHSGGW+KAL
Sbjct: 122 AYRTVKLLRIPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFEHSGGWVKAL 181

Query: 198 LEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEE 257
           LEEAENERMHLMT +E+ +PKWYER LV  VQGVFFNA+F+ Y++SPK AHR+VGYLEEE
Sbjct: 182 LEEAENERMHLMTMVELVRPKWYERLLVLTVQGVFFNAFFVLYVLSPKAAHRVVGYLEEE 241

Query: 258 AIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYAS 317
           AIHSYTEFLK++D G IENVPAPAIA DYWRLP ++TLKDV+ V+RADEAHHRDVNH+AS
Sbjct: 242 AIHSYTEFLKDIDSGAIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFAS 301

Query: 318 DIHYQGRQLRESPAPLGYH 336
           DIH+QG++L E+PAP+GYH
Sbjct: 302 DIHFQGKKLNEAPAPIGYH 320


>gi|111607217|dbj|BAF02775.1| alternative oxidase [Lactuca sativa]
          Length = 228

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 198/228 (86%), Positives = 214/228 (93%)

Query: 109 CFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVA 168
           CFRPWE Y+ADLSIDLKKHH PTTF DK+A WTVKSLR+PTD+FFQ+RYGCRAMMLETVA
Sbjct: 1   CFRPWETYQADLSIDLKKHHTPTTFLDKLAYWTVKSLRFPTDVFFQKRYGCRAMMLETVA 60

Query: 169 AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
           AVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENERMHLMTFMEV+KP+WYERALVF V
Sbjct: 61  AVPGMVGGMLLHCKSLRRFEPSGGWIKALLEEAENERMHLMTFMEVSKPRWYERALVFTV 120

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWR 288
           QGVFFNAYFL YL SPK AHR+VGYLEEEAIHSYTEFLKELDKG IENV APAIA DYWR
Sbjct: 121 QGVFFNAYFLAYLASPKLAHRIVGYLEEEAIHSYTEFLKELDKGTIENVKAPAIAIDYWR 180

Query: 289 LPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           LP +STL+DVV+VVRADEAHHRDVNH+ASDIHYQG +L++SPAP+GYH
Sbjct: 181 LPADSTLRDVVMVVRADEAHHRDVNHFASDIHYQGLELKDSPAPIGYH 228


>gi|19912727|dbj|BAB88646.1| alternative oxidase [Triticum aestivum]
          Length = 347

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 195/249 (78%), Positives = 219/249 (87%)

Query: 88  SYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRW 147
           SYWG+   K+   DG+EWKW+CFRPWEAY +D +IDL KHH P    DK+A WTVKSLR 
Sbjct: 99  SYWGIVPAKLVNKDGAEWKWSCFRPWEAYTSDTTIDLSKHHKPKVLLDKIAYWTVKSLRV 158

Query: 148 PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMH 207
           PTD+FFQRRYGCRAMMLETVAAVPGMV GMLLH +SLRRFE SGGWI+ALLEEAENERMH
Sbjct: 159 PTDIFFQRRYGCRAMMLETVAAVPGMVDGMLLHLRSLRRFEQSGGWIRALLEEAENERMH 218

Query: 208 LMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLK 267
           LMTFMEVA PKWYERALV AVQGVFFNAYFLGY++SPKFAHR+VGYLEEEAIHSYTEFL+
Sbjct: 219 LMTFMEVANPKWYERALVLAVQGVFFNAYFLGYIVSPKFAHRVVGYLEEEAIHSYTEFLR 278

Query: 268 ELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLR 327
           +L+ G IENVPAP IA DYWRLP ++ LKDVV VVRADEAHHRDVNH+A+DIH+QG +L 
Sbjct: 279 DLEAGRIENVPAPRIAIDYWRLPADARLKDVVTVVRADEAHHRDVNHFAADIHFQGLELN 338

Query: 328 ESPAPLGYH 336
           ++PAPLGYH
Sbjct: 339 KTPAPLGYH 347


>gi|225448273|ref|XP_002274470.1| PREDICTED: alternative oxidase, mitochondrial [Vitis vinifera]
          Length = 320

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 199/319 (62%), Positives = 244/319 (76%), Gaps = 14/319 (4%)

Query: 32  NRHLSTFLVRAPILGSRNRSTLALGGEKEQQREENV---QTTGAAAAGGSGNKDEKRI-- 86
           N+ ++  L+R  I G++   ++     + + R+E     +      A    N+ EK +  
Sbjct: 2   NQLVARSLMRGLINGAKCNRSILCSVTRVELRDEKAAFGRMMSTETALAEKNQKEKSVEE 61

Query: 87  ---------VSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKM 137
                     SYWG++ PK+ ++DGS W WNCF PWE Y AD +IDL KHH P TF DK+
Sbjct: 62  VEKQSKVVFSSYWGIQRPKITREDGSPWPWNCFMPWETYHADTAIDLSKHHVPKTFVDKV 121

Query: 138 ALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKAL 197
           A  TVK LR PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLR+FEHSGGW+KAL
Sbjct: 122 AYRTVKLLRIPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFEHSGGWVKAL 181

Query: 198 LEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEE 257
           LEEAENERMHLMT +E+ +PKWYER LV  VQGVFFNA+F+ Y++SPK AHR+VGYLEEE
Sbjct: 182 LEEAENERMHLMTMVELVRPKWYERLLVLTVQGVFFNAFFVLYVLSPKAAHRVVGYLEEE 241

Query: 258 AIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYAS 317
           AIHSYTEFLK++D G IENVPAPAIA DYWRLP ++TLKDV+ V+RADEAHHRDVNH+AS
Sbjct: 242 AIHSYTEFLKDIDSGAIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFAS 301

Query: 318 DIHYQGRQLRESPAPLGYH 336
           DIH+QG++L E+PAP+GYH
Sbjct: 302 DIHFQGKKLNEAPAPIGYH 320


>gi|89474873|gb|AAP33163.2| mitochondrial alternative oxidase 2 [Cucumis sativus]
          Length = 346

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 192/256 (75%), Positives = 222/256 (86%)

Query: 81  KDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALW 140
           KD   + SYWG+  PK+ ++DGSEW WNCF PWE Y ADLSIDL KHH P TF DK+A  
Sbjct: 91  KDNALVSSYWGIYRPKITREDGSEWPWNCFMPWETYRADLSIDLGKHHQPKTFLDKVAYR 150

Query: 141 TVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEE 200
            VK LR PTD+FFQRRYGCRA+MLETVAAVPGMVGGMLLH KSLR+F+HSGGWIKALLEE
Sbjct: 151 VVKLLRIPTDIFFQRRYGCRAVMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEE 210

Query: 201 AENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 260
           AENERMHLMT +E+ +PKWYER LV  VQGVFFNA+F+ YL+SPK AHR+VGYLEEEAIH
Sbjct: 211 AENERMHLMTMIELVQPKWYERLLVITVQGVFFNAFFVLYLMSPKLAHRIVGYLEEEAIH 270

Query: 261 SYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIH 320
           SYTE+LK++++G IENVPAPAIA DYWRLP ++ LKDV+ V+RADEAHHRDVNH+ASDIH
Sbjct: 271 SYTEYLKDINEGKIENVPAPAIAIDYWRLPKDARLKDVITVIRADEAHHRDVNHFASDIH 330

Query: 321 YQGRQLRESPAPLGYH 336
           +QG++LRES APLGYH
Sbjct: 331 FQGKELRESAAPLGYH 346


>gi|449438777|ref|XP_004137164.1| PREDICTED: ubiquinol oxidase, mitochondrial-like [Cucumis sativus]
 gi|449532455|ref|XP_004173196.1| PREDICTED: ubiquinol oxidase, mitochondrial-like [Cucumis sativus]
          Length = 346

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 192/256 (75%), Positives = 222/256 (86%)

Query: 81  KDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALW 140
           KD   + SYWG+  PK+ ++DGSEW WNCF PWE Y ADLSIDL KHH P TF DK+A  
Sbjct: 91  KDNALVSSYWGIYRPKITREDGSEWPWNCFMPWETYRADLSIDLGKHHQPKTFLDKVAYR 150

Query: 141 TVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEE 200
            VK LR PTD+FFQRRYGCRA+MLETVAAVPGMVGGMLLH KSLR+F+HSGGWIKALLEE
Sbjct: 151 VVKLLRIPTDIFFQRRYGCRAVMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEE 210

Query: 201 AENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 260
           AENERMHLMT +E+ +PKWYER LV  VQGVFFNA+F+ YL+SPK AHR+VGYLEEEAIH
Sbjct: 211 AENERMHLMTMIELVQPKWYERLLVITVQGVFFNAFFVLYLMSPKLAHRIVGYLEEEAIH 270

Query: 261 SYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIH 320
           SYTE+LK++++G IENVPAPAIA DYWRLP ++ LKDV+ V+RADEAHHRDVNH+ASDIH
Sbjct: 271 SYTEYLKDINEGKIENVPAPAIAIDYWRLPKDARLKDVITVIRADEAHHRDVNHFASDIH 330

Query: 321 YQGRQLRESPAPLGYH 336
           +QG++LRES APLGYH
Sbjct: 331 FQGKELRESAAPLGYH 346


>gi|283488059|gb|ADB24723.1| mitochondrial alternative oxidase 2a [Daucus carota]
 gi|283488061|gb|ADB24724.1| mitochondrial alternative oxidase 2a [Daucus carota]
          Length = 338

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 189/251 (75%), Positives = 221/251 (88%)

Query: 86  IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 145
           + SYWGV  P++ K+DG+EW WNCF PWE Y+ADLSIDL KHH P TF DK+A  TVK L
Sbjct: 88  VSSYWGVARPRITKEDGTEWPWNCFMPWETYQADLSIDLGKHHVPKTFLDKVAYKTVKLL 147

Query: 146 RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 205
           R PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLR+F+ SGGWIKALLEEAENER
Sbjct: 148 RIPTDVFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALLEEAENER 207

Query: 206 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 265
           MHLMT +E+ KPKWYER LV  VQGVFFNA+F+ Y++SPK AHR+VGYLEEEAIHSYTE+
Sbjct: 208 MHLMTMVELVKPKWYERFLVLTVQGVFFNAFFVLYMMSPKVAHRVVGYLEEEAIHSYTEY 267

Query: 266 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 325
           LK+++ G IENVPAPAIA DYWRLP ++ LKDV+ V+RADEAHHRDVNH+ASDIH+QG++
Sbjct: 268 LKDIESGAIENVPAPAIAIDYWRLPKDAKLKDVITVIRADEAHHRDVNHFASDIHFQGKE 327

Query: 326 LRESPAPLGYH 336
           LR++PAPLGYH
Sbjct: 328 LRDAPAPLGYH 338


>gi|344190170|gb|AEM97867.1| mitochondrial alternative oxidase 1A [Corylus heterophylla]
          Length = 326

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 191/256 (74%), Positives = 225/256 (87%), Gaps = 1/256 (0%)

Query: 82  DEKRIVS-YWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALW 140
           DE  +VS YWGV  P++ ++DG+EW WNCF PWE+Y+ADLSIDL+KHH P  F DK+A  
Sbjct: 71  DETAVVSSYWGVSRPRIKREDGTEWPWNCFMPWESYKADLSIDLQKHHVPKVFLDKVAYR 130

Query: 141 TVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEE 200
           TVK LR PTD+FF+RRYGCRAMMLETVAAVPGMVGGMLLH +SLR+FEHSGGWIKALLEE
Sbjct: 131 TVKLLRIPTDIFFKRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFEHSGGWIKALLEE 190

Query: 201 AENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 260
           AENERMHLMT +E+ KPKWYER LV  VQGVFFNAYF+ YL+SPK AHR+VGYLEEEAIH
Sbjct: 191 AENERMHLMTMVELVKPKWYERLLVLTVQGVFFNAYFIAYLLSPKLAHRIVGYLEEEAIH 250

Query: 261 SYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIH 320
           SYTE+LK++  G IENV APAIA DYW+LP ++TL+DVV V+RADEAHHRDVNH+A+DIH
Sbjct: 251 SYTEYLKDITSGAIENVQAPAIAIDYWKLPKDATLEDVVTVIRADEAHHRDVNHFAADIH 310

Query: 321 YQGRQLRESPAPLGYH 336
           +QG++LR+SPAP+GYH
Sbjct: 311 FQGKELRDSPAPVGYH 326


>gi|291245406|gb|ADD84880.1| mitochondrial AOX2 [Citrullus lanatus]
          Length = 349

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 190/251 (75%), Positives = 219/251 (87%)

Query: 86  IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 145
           + SYWG+  PK+ ++DGSEW WNCF PWE Y ADLSIDL KHH P TF DK+A   VK L
Sbjct: 99  VSSYWGIYRPKITREDGSEWPWNCFMPWETYRADLSIDLGKHHEPKTFLDKVAYRVVKLL 158

Query: 146 RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 205
           R PTD+FFQRRYGCRA+MLETVAAVPGMVGGMLLH KSLR+F+HSGGWIKALLEEAENER
Sbjct: 159 RIPTDIFFQRRYGCRAVMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENER 218

Query: 206 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 265
           MHLMT +E+ +PKWYER LV  VQGVFFNA+F+ YL+SPK AHR+VGYLEEEAIHSYTE+
Sbjct: 219 MHLMTMIELVQPKWYERLLVITVQGVFFNAFFVLYLMSPKLAHRIVGYLEEEAIHSYTEY 278

Query: 266 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 325
           LK++D+G IENVPAPAIA DYWRLP ++ LKDV+ V+RADEAHHRDVNH+ASDIH+QG++
Sbjct: 279 LKDIDEGKIENVPAPAIAIDYWRLPKDARLKDVITVIRADEAHHRDVNHFASDIHFQGKE 338

Query: 326 LRESPAPLGYH 336
           LRES  PLGYH
Sbjct: 339 LRESAVPLGYH 349


>gi|488826|emb|CAA55892.1| alternative oxidase [Mangifera indica]
          Length = 274

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 192/273 (70%), Positives = 228/273 (83%), Gaps = 3/273 (1%)

Query: 67  VQTTGAAAAGGSGNKDEKR---IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSID 123
           +   G A A     K+EK+   + +YWG+  PK+ ++DGSEW WNCF PWE Y +DLSID
Sbjct: 2   LSNAGGAEAQVKEQKEEKKDAMVSNYWGISRPKITREDGSEWPWNCFMPWETYRSDLSID 61

Query: 124 LKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKS 183
           LKKHH P TF DK A  TVK LR PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH KS
Sbjct: 62  LKKHHVPRTFMDKFAYRTVKILRVPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKS 121

Query: 184 LRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLIS 243
           LR+ E SGGWIKALLEEAENERMHLMT +E+ +PKWYER LV AVQGVFFN++F+ Y++S
Sbjct: 122 LRKLEQSGGWIKALLEEAENERMHLMTMVELVQPKWYERLLVLAVQGVFFNSFFVLYVLS 181

Query: 244 PKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVR 303
           PK AHR+VGYLEEEAIHSYTE+LK++D G I+N+PAPAIA DYWRLP ++TLKDV+ VVR
Sbjct: 182 PKLAHRIVGYLEEEAIHSYTEYLKDIDSGAIKNIPAPAIAIDYWRLPKDATLKDVITVVR 241

Query: 304 ADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           ADEAHHRDVNH+ASD+  QG++LR++PAP+GYH
Sbjct: 242 ADEAHHRDVNHFASDVQVQGKELRDAPAPVGYH 274


>gi|225571961|gb|ABZ81229.2| mitochondrial alternative oxidase 2a [Daucus carota]
          Length = 329

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 189/251 (75%), Positives = 221/251 (88%)

Query: 86  IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 145
           + SYWGV  P++ K+DG+EW WNCF PWE Y+ADLSIDL KHH P TF DK+A  TVK L
Sbjct: 79  VSSYWGVARPRITKEDGTEWPWNCFMPWETYQADLSIDLGKHHVPKTFLDKVAYKTVKLL 138

Query: 146 RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 205
           R PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLR+F+ SGGWIKALLEEAENER
Sbjct: 139 RIPTDVFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALLEEAENER 198

Query: 206 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 265
           MHLMT +E+ KPKWYER LV  VQGVFFNA+F+ Y++SPK AHR+VGYLEEEAIHSYTE+
Sbjct: 199 MHLMTMVELVKPKWYERFLVLTVQGVFFNAFFVLYMMSPKVAHRVVGYLEEEAIHSYTEY 258

Query: 266 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 325
           LK+++ G IENVPAPAIA DYWRLP ++ LKDV+ V+RADEAHHRDVNH+ASDIH+QG++
Sbjct: 259 LKDIESGAIENVPAPAIAIDYWRLPKDAKLKDVITVIRADEAHHRDVNHFASDIHFQGKE 318

Query: 326 LRESPAPLGYH 336
           LR++PAPLGYH
Sbjct: 319 LRDAPAPLGYH 329


>gi|51860699|gb|AAU11469.1| mitochondrial alternative oxidase 1c [Saccharum officinarum]
          Length = 239

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 195/236 (82%), Positives = 216/236 (91%)

Query: 101 DGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCR 160
           DG EW+W+CFRPWEAY+ D SIDL +HH P    DK+A WTVK LR PTD+FFQRRYGCR
Sbjct: 4   DGVEWRWSCFRPWEAYKPDTSIDLTRHHEPKVLLDKIAYWTVKLLRVPTDIFFQRRYGCR 63

Query: 161 AMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWY 220
           AMMLETVAAVPGMVGGMLLH +SLRRFE SGGWI+ALLEEAENERMHLMTFMEVAKPKWY
Sbjct: 64  AMMLETVAAVPGMVGGMLLHLRSLRRFEPSGGWIRALLEEAENERMHLMTFMEVAKPKWY 123

Query: 221 ERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAP 280
           ERALV AVQGVFFNAYFLGYLISPKFAHR+VGYLEEEAIHSYTE+LK+L+ G IENVPAP
Sbjct: 124 ERALVLAVQGVFFNAYFLGYLISPKFAHRVVGYLEEEAIHSYTEYLKDLEAGKIENVPAP 183

Query: 281 AIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           AIA DYW+LP ++TLKDVV+VVR+DEAHHRDVNH+ASDIH+QG QL+E+PAPLGYH
Sbjct: 184 AIAIDYWQLPADATLKDVVIVVRSDEAHHRDVNHFASDIHFQGMQLKETPAPLGYH 239


>gi|414585624|tpg|DAA36195.1| TPA: alternative oxidase [Zea mays]
          Length = 332

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/335 (63%), Positives = 250/335 (74%), Gaps = 35/335 (10%)

Query: 4   RGGVRLFS-TLTARTASTEA-AARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKEQ 61
           RGG+   +  L AR AST A AAR  AG   RH                      G  E+
Sbjct: 31  RGGMPAAARLLPARMASTAAEAAREDAGANKRH----------------------GGTEK 68

Query: 62  QREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLS 121
             EE        AAGG   + +K +VSYWG++ PK+ K+DG+EWKW  FRPW+AY +D S
Sbjct: 69  HEEE--------AAGG---QSKKAVVSYWGIDTPKLVKEDGTEWKWTSFRPWDAYTSDTS 117

Query: 122 IDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHC 181
           ID+ KHHAPTT  DK A   VKSLR P DLFFQRR+   A++LETVAAVPGMVGGMLLH 
Sbjct: 118 IDIGKHHAPTTLPDKAAYLIVKSLRVPMDLFFQRRHASHALLLETVAAVPGMVGGMLLHL 177

Query: 182 KSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYL 241
           +SLRRFEHSGGWI+ALLEEAENERMHLMTF+EV +P+W+ERALV   QGVFFNAYF+GYL
Sbjct: 178 RSLRRFEHSGGWIRALLEEAENERMHLMTFLEVTQPRWWERALVLTAQGVFFNAYFVGYL 237

Query: 242 ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLV 301
           +SPKFAHR+VGYLEEEA+HSYTE+LK+L+ G I+N PAPAIA DYWRLP ++ LKDVV V
Sbjct: 238 LSPKFAHRVVGYLEEEAVHSYTEYLKDLEAGIIDNTPAPAIAIDYWRLPADAKLKDVVTV 297

Query: 302 VRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           VRADEAHHRDVNH+ASDIHYQG +L+++PAPL YH
Sbjct: 298 VRADEAHHRDVNHFASDIHYQGMKLKDTPAPLSYH 332


>gi|3915618|sp|Q40294.2|AOX1_MANIN RecName: Full=Ubiquinol oxidase, mitochondrial; AltName:
           Full=Alternative oxidase; Flags: Precursor
          Length = 318

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 192/273 (70%), Positives = 228/273 (83%), Gaps = 3/273 (1%)

Query: 67  VQTTGAAAAGGSGNKDEKR---IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSID 123
           +   G A A     K+EK+   + +YWG+  PK+ ++DGSEW WNCF PWE Y +DLSID
Sbjct: 46  LSNAGGAEAQVKEQKEEKKDAMVSNYWGISRPKITREDGSEWPWNCFMPWETYRSDLSID 105

Query: 124 LKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKS 183
           LKKHH P TF DK A  TVK LR PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH KS
Sbjct: 106 LKKHHVPRTFMDKFAYRTVKILRVPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKS 165

Query: 184 LRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLIS 243
           LR+ E SGGWIKALLEEAENERMHLMT +E+ +PKWYER LV AVQGVFFN++F+ Y++S
Sbjct: 166 LRKLEQSGGWIKALLEEAENERMHLMTMVELVQPKWYERLLVLAVQGVFFNSFFVLYVLS 225

Query: 244 PKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVR 303
           PK AHR+VGYLEEEAIHSYTE+LK++D G I+N+PAPAIA DYWRLP ++TLKDV+ VVR
Sbjct: 226 PKLAHRIVGYLEEEAIHSYTEYLKDIDSGAIKNIPAPAIAIDYWRLPKDATLKDVITVVR 285

Query: 304 ADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           ADEAHHRDVNH+ASD+  QG++LR++PAP+GYH
Sbjct: 286 ADEAHHRDVNHFASDVQVQGKELRDAPAPVGYH 318


>gi|162463026|ref|NP_001105663.1| alternative oxidase AOX3 precursor [Zea mays]
 gi|25989201|gb|AAL27797.1| alternative oxidase AOX3 precursor [Zea mays]
          Length = 332

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/335 (63%), Positives = 250/335 (74%), Gaps = 35/335 (10%)

Query: 4   RGGVRLFS-TLTARTASTEA-AARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKEQ 61
           RGG+   +  L AR AST A AAR  AG   +H                      G  E+
Sbjct: 31  RGGMPAAARLLPARMASTAAEAAREDAGANKQH----------------------GGTEK 68

Query: 62  QREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLS 121
             EE        AAGG   + +K +VSYWG++ PK+ K+DG+EWKW  FRPW+AY +D S
Sbjct: 69  HEEE--------AAGG---QSKKAVVSYWGIDTPKLVKEDGTEWKWTSFRPWDAYTSDTS 117

Query: 122 IDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHC 181
           ID+ KHHAPTT  DK A   VKSLR P DLFFQRR+   A++LETVAAVPGMVGGMLLH 
Sbjct: 118 IDIGKHHAPTTLPDKAAYLIVKSLRVPMDLFFQRRHASHALLLETVAAVPGMVGGMLLHL 177

Query: 182 KSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYL 241
           +SLRRFEHSGGWI+ALLEEAENERMHLMTF+EV +P+W+ERALV   QGVFFNAYFLGYL
Sbjct: 178 RSLRRFEHSGGWIRALLEEAENERMHLMTFLEVTQPRWWERALVLTAQGVFFNAYFLGYL 237

Query: 242 ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLV 301
           +SPKFAHR+VGYLEEEA+HSYTE+LK+L+ G I+N PAPAIA DYWRLP ++ LKDVV V
Sbjct: 238 LSPKFAHRVVGYLEEEAVHSYTEYLKDLEAGIIDNTPAPAIAIDYWRLPADAKLKDVVTV 297

Query: 302 VRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           VRADEAHHRDVNH+ASDIHYQG +L+++PAPL YH
Sbjct: 298 VRADEAHHRDVNHFASDIHYQGMKLKDTPAPLSYH 332


>gi|345505255|gb|AEN99850.1| mitochondrial AOX2 [Citrullus lanatus]
          Length = 349

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 190/251 (75%), Positives = 219/251 (87%)

Query: 86  IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 145
           + SYWG+  PK+ ++DGSEW WNCF PWE Y ADLSIDL KHH P TF DK+A   VK L
Sbjct: 99  VSSYWGIYRPKITREDGSEWPWNCFMPWETYRADLSIDLGKHHEPKTFLDKVAYRVVKLL 158

Query: 146 RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 205
           R PTD+FFQRRYGCRA+MLETVAAVPGMVGGMLLH KSLR+F+HSG WIKALLEEAENER
Sbjct: 159 RIPTDIFFQRRYGCRAVMLETVAAVPGMVGGMLLHLKSLRKFQHSGVWIKALLEEAENER 218

Query: 206 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 265
           MHLMT +E+ +PKWYER LV  VQGVFFNA+F+ YL+SPK AHR+VGYLEEEAIHSYTE+
Sbjct: 219 MHLMTMIELVQPKWYERLLVITVQGVFFNAFFVLYLMSPKLAHRIVGYLEEEAIHSYTEY 278

Query: 266 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 325
           LK++D+G IENVPAPAIA DYWRLP ++ LKDV+ V+RADEAHHRDVNH+ASDIH+QG++
Sbjct: 279 LKDIDEGKIENVPAPAIAIDYWRLPKDARLKDVITVIRADEAHHRDVNHFASDIHFQGKE 338

Query: 326 LRESPAPLGYH 336
           LRES APLGYH
Sbjct: 339 LRESAAPLGYH 349


>gi|255556647|ref|XP_002519357.1| Alternative oxidase, mitochondrial precursor, putative [Ricinus
           communis]
 gi|223541424|gb|EEF42974.1| Alternative oxidase, mitochondrial precursor, putative [Ricinus
           communis]
          Length = 352

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 195/292 (66%), Positives = 237/292 (81%), Gaps = 5/292 (1%)

Query: 48  RNRSTLALGGEKEQ---QREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSE 104
           R  ST  L  + E+   ++EE  +  G  +     N  +  + SYWG+  PKV ++DGSE
Sbjct: 63  RMMSTSQLTEQSEKAVAKKEEASEVKGVESV--KVNDSKAVVSSYWGIVRPKVLREDGSE 120

Query: 105 WKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMML 164
           W WNCF PWE Y+++ +IDL KHH P TF DK+A  TVK LR PTD+FF+RRYGCRAMML
Sbjct: 121 WPWNCFMPWETYQSNTAIDLSKHHVPKTFLDKVAYRTVKLLRVPTDIFFRRRYGCRAMML 180

Query: 165 ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERAL 224
           ETVAAVPGMVGGMLLH +SLR+F+ SGGWIKALLEEAENERMHLMT +E+ +P+WYER L
Sbjct: 181 ETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALLEEAENERMHLMTMVELVQPRWYERLL 240

Query: 225 VFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAT 284
           V AVQGVFFNAYF+ YL+SPK AHR+ GYLEEEAIHSYTEFLK++ +G IEN+PAPAI+ 
Sbjct: 241 VLAVQGVFFNAYFVLYLLSPKLAHRITGYLEEEAIHSYTEFLKDIKEGKIENIPAPAISI 300

Query: 285 DYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           DYWRLP ++TL+DV+ V+RADEAHHRDVNH+ASDIHYQG++LRE+PAPLGYH
Sbjct: 301 DYWRLPKDATLEDVITVIRADEAHHRDVNHFASDIHYQGKELREAPAPLGYH 352


>gi|116784421|gb|ABK23336.1| unknown [Picea sitchensis]
          Length = 400

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 189/248 (76%), Positives = 215/248 (86%)

Query: 88  SYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRW 147
           SYWG    ++++ DGS W WN FRPWE Y  ++SIDLKKHH P TF+DK A WTV+++R 
Sbjct: 152 SYWGFYPTQISRQDGSPWPWNSFRPWETYTPNMSIDLKKHHVPKTFADKFAYWTVRAMRI 211

Query: 148 PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMH 207
           P DLFF++RY  R MMLETVAAVPGMVGGMLLHCKSLR+F+HS GWIKALLEEAENERMH
Sbjct: 212 PVDLFFKKRYDIRVMMLETVAAVPGMVGGMLLHCKSLRKFQHSAGWIKALLEEAENERMH 271

Query: 208 LMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLK 267
           LMTFMEV KP W+ERALVFAVQGVFFN YFL Y+ISPK AHR+VGYLEEEA++SYTEFLK
Sbjct: 272 LMTFMEVTKPNWFERALVFAVQGVFFNTYFLVYIISPKLAHRIVGYLEEEAVYSYTEFLK 331

Query: 268 ELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLR 327
           ELD GNI N PAPAIA DYWRLP +STL+DVV+VVRADEAHHRDVNH+ASDIH+QGR+LR
Sbjct: 332 ELDNGNIPNGPAPAIAIDYWRLPKDSTLRDVVMVVRADEAHHRDVNHFASDIHFQGRELR 391

Query: 328 ESPAPLGY 335
           E+ APL Y
Sbjct: 392 EAAAPLDY 399


>gi|18398395|ref|NP_564395.1| alternative oxidase 3 [Arabidopsis thaliana]
 gi|85681032|sp|Q8LEE7.2|AOX3_ARATH RecName: Full=Ubiquinol oxidase 3, mitochondrial; AltName:
           Full=Alternative oxidase 3; Flags: Precursor
 gi|8920609|gb|AAF81331.1|AC007767_11 Strong similarity to alternative oxidase from Populus tremula x
           Populus tremuloides gb|AJ271889. It contains an
           alternative oxidase domain PF|01786 [Arabidopsis
           thaliana]
 gi|115311485|gb|ABI93923.1| At1g32350 [Arabidopsis thaliana]
 gi|332193346|gb|AEE31467.1| alternative oxidase 3 [Arabidopsis thaliana]
          Length = 318

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/336 (58%), Positives = 250/336 (74%), Gaps = 18/336 (5%)

Query: 1   MMYRGGVRLFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKE 60
           M YR    ++ TL    +S+  ++ +  G    HL + L    +L S   S ++      
Sbjct: 1   MSYRS---IYRTLRPVLSSSVQSSGLGIGGFRGHLISHLPNVRLLSSDTSSPVS----GN 53

Query: 61  QQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADL 120
            Q E  ++T            D K I +YWG+   K+ K DGS WKWNCF+PW++Y+ D+
Sbjct: 54  NQPENPIRTA-----------DGKVISTYWGIPPTKITKPDGSAWKWNCFQPWDSYKPDV 102

Query: 121 SIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH 180
           SID+ KHH P+ F+DK A WTV++L+ P  LFFQR++ C AM+LETVAAVPGMVGGMLLH
Sbjct: 103 SIDVTKHHKPSNFTDKFAYWTVQTLKIPVQLFFQRKHMCHAMLLETVAAVPGMVGGMLLH 162

Query: 181 CKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGY 240
            KSLRRFEHSGGWIKALLEEAENERMHLMTF+E+++PKWYERA+VF VQGVFFNAYFL Y
Sbjct: 163 LKSLRRFEHSGGWIKALLEEAENERMHLMTFIELSQPKWYERAIVFTVQGVFFNAYFLAY 222

Query: 241 LISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVL 300
           +ISPK AHR+ GYLEEEA++SYTEFLK++D G  EN PAPAIA DYWRLP ++TL+DVV 
Sbjct: 223 VISPKLAHRITGYLEEEAVNSYTEFLKDIDAGKFENSPAPAIAIDYWRLPKDATLRDVVY 282

Query: 301 VVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           V+RADEAHHRD+NHYASDI ++G +L+E+PAP+GYH
Sbjct: 283 VIRADEAHHRDINHYASDIQFKGHELKEAPAPIGYH 318


>gi|122058944|gb|ABM66368.1| mitochondrial alternative oxidase 2a [Vigna unguiculata]
          Length = 329

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 189/256 (73%), Positives = 223/256 (87%), Gaps = 2/256 (0%)

Query: 83  EKRIV--SYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALW 140
           EK +V  SYWG+  PK+ ++DG+EW WNCF PWE Y ++LSIDL KHH P  F DK+A  
Sbjct: 74  EKSVVESSYWGISRPKIMREDGTEWPWNCFMPWETYHSNLSIDLTKHHVPKNFLDKVAYR 133

Query: 141 TVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEE 200
           TVK LR PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLR+F+ SGGWIKAL+EE
Sbjct: 134 TVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALMEE 193

Query: 201 AENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 260
           AENERMHLMT +E+ KPKWYER LV AVQGVFFNA+F+ Y++SPK AHR+VGYLEEEAIH
Sbjct: 194 AENERMHLMTMVELVKPKWYERLLVIAVQGVFFNAFFVLYILSPKVAHRIVGYLEEEAIH 253

Query: 261 SYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIH 320
           SYTE+LK+++ G IENVPAPAIA DYWRLP ++ LKDV+ V+RADEAHHRDVNH+ASDIH
Sbjct: 254 SYTEYLKDIESGAIENVPAPAIAIDYWRLPKDAKLKDVITVIRADEAHHRDVNHFASDIH 313

Query: 321 YQGRQLRESPAPLGYH 336
           +QG++LRE+PAP+GYH
Sbjct: 314 FQGKELREAPAPIGYH 329


>gi|357165631|ref|XP_003580445.1| PREDICTED: alternative oxidase 1b, mitochondrial-like [Brachypodium
           distachyon]
          Length = 324

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/323 (62%), Positives = 242/323 (74%), Gaps = 9/323 (2%)

Query: 23  AARILAGQTNRHLSTFLVRA--PILGSRNRSTLALGGEKEQQR------EENVQTTGAAA 74
           ++R+      RHL+  LV A  P  G   RS +         R        +VQ   A A
Sbjct: 2   SSRMAGATLLRHLAPRLVAAAEPASGLAARSIMPAAARIFPARMASTAAAPDVQEGAAGA 61

Query: 75  AGGS-GNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTF 133
            G + G    K +VSYWG+E  K+ K DG+EW W CFRPW+ Y AD +ID++KHH P + 
Sbjct: 62  TGKTEGQSKTKAVVSYWGIEPRKLVKADGTEWPWFCFRPWDTYTADTAIDMQKHHEPKSL 121

Query: 134 SDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW 193
            DK+A +TVK+L  P DLFFQRR+   A++LETVAAVP MVGGMLLH +SLRRFEHSGGW
Sbjct: 122 PDKIAYYTVKTLGVPKDLFFQRRHASHALLLETVAAVPPMVGGMLLHLRSLRRFEHSGGW 181

Query: 194 IKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGY 253
           I+AL+EEAENERMHLMTF+EV +PKW+ERALV AVQGVFFNAYF+GYL+SPKFAHR VGY
Sbjct: 182 IRALMEEAENERMHLMTFLEVTQPKWWERALVMAVQGVFFNAYFVGYLVSPKFAHRFVGY 241

Query: 254 LEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVN 313
           LEEEA+ SYTE+LK+L+ G IEN PAPAIA DYWRLP ++TLKDVV VVRADEAHHRD N
Sbjct: 242 LEEEAVKSYTEYLKDLEAGKIENTPAPAIAIDYWRLPADATLKDVVAVVRADEAHHRDAN 301

Query: 314 HYASDIHYQGRQLRESPAPLGYH 336
           HYASDIHYQG  L+E+PAP+GYH
Sbjct: 302 HYASDIHYQGLTLKETPAPIGYH 324


>gi|302805258|ref|XP_002984380.1| hypothetical protein SELMODRAFT_180978 [Selaginella moellendorffii]
 gi|300147768|gb|EFJ14430.1| hypothetical protein SELMODRAFT_180978 [Selaginella moellendorffii]
          Length = 335

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/341 (62%), Positives = 252/341 (73%), Gaps = 18/341 (5%)

Query: 4   RGG-----VRLFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGE 58
           RGG     VR  ST +A  A+  A+++I A    R    F +     G+R+  ++A    
Sbjct: 5   RGGILRLVVRRISTPSA--AAPLASSKIAAVLPGRVFQLFDLGG---GARDYGSVA-AAV 58

Query: 59  KEQQREENVQTTGAAAAGGSGNKDEKRIV---SYWGVEAPKVNKDDGSEWKWNCFRPWEA 115
           K ++ E ++Q            KDEK+ V    YWG+   K+  + G  W WN FRP EA
Sbjct: 59  KSEEAEADLQFQEQPPE----KKDEKKDVVVSDYWGILPKKLVDEQGKPWPWNSFRPTEA 114

Query: 116 YEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVG 175
           Y  DL+IDLKKHH P +  DK+A WTVK+LR PTD+FFQRRYGCRAMMLETVA VPGMVG
Sbjct: 115 YAPDLTIDLKKHHNPVSVVDKLAYWTVKTLRIPTDIFFQRRYGCRAMMLETVAGVPGMVG 174

Query: 176 GMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNA 235
           GMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEV +PKWYERALVF VQGVFFNA
Sbjct: 175 GMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVVQPKWYERALVFTVQGVFFNA 234

Query: 236 YFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTL 295
           YFL Y++ P+ AHR+VGYLEEEAIHSYT++LKE+DKG I NVPAPAIA DYWRLP ++ +
Sbjct: 235 YFLCYVLFPRLAHRIVGYLEEEAIHSYTQYLKEIDKGTIPNVPAPAIAIDYWRLPKDAKM 294

Query: 296 KDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           +DVV VVRADEAHHRDVNH+A+DIH  G++LR + APL YH
Sbjct: 295 RDVVEVVRADEAHHRDVNHFAADIHKAGKELRSAAAPLSYH 335


>gi|14572654|emb|CAC42836.1| putative alternative oxidase [Vigna unguiculata]
          Length = 329

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 188/256 (73%), Positives = 223/256 (87%), Gaps = 2/256 (0%)

Query: 83  EKRIV--SYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALW 140
           EK +V  SYWG+  P++ ++DG+EW WNCF PWE Y ++LSIDL KHH P  F DK+A  
Sbjct: 74  EKSVVESSYWGISRPRIMREDGTEWPWNCFMPWETYHSNLSIDLTKHHVPKNFLDKVAYR 133

Query: 141 TVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEE 200
           TVK LR PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLR+F+ SGGWIKAL+EE
Sbjct: 134 TVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALMEE 193

Query: 201 AENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 260
           AENERMHLMT +E+ KPKWYER LV AVQGVFFNA+F+ Y++SPK AHR+VGYLEEEAIH
Sbjct: 194 AENERMHLMTMVELVKPKWYERLLVIAVQGVFFNAFFVLYILSPKVAHRIVGYLEEEAIH 253

Query: 261 SYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIH 320
           SYTE+LK+++ G IENVPAPAIA DYWRLP ++ LKDV+ V+RADEAHHRDVNH+ASDIH
Sbjct: 254 SYTEYLKDIESGAIENVPAPAIAIDYWRLPKDAKLKDVITVIRADEAHHRDVNHFASDIH 313

Query: 321 YQGRQLRESPAPLGYH 336
           +QG++LRE+PAP+GYH
Sbjct: 314 FQGKELREAPAPIGYH 329


>gi|357165634|ref|XP_003580446.1| PREDICTED: alternative oxidase 1a, mitochondrial-like [Brachypodium
           distachyon]
          Length = 330

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/331 (61%), Positives = 244/331 (73%), Gaps = 15/331 (4%)

Query: 6   GVRLFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKEQQREE 65
           G RLF+   A  AS  AA  I+A    R          IL +R  ST +   + ++    
Sbjct: 15  GPRLFAA--AEPASGLAARSIMAPAAAR----------ILPARMASTASAAPDAKEGASA 62

Query: 66  NVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLK 125
             +T  AA    S  K    +VSYWG+E+ K+ K DG+EW W CF PW+ Y AD SID++
Sbjct: 63  AAKTDSAATPEQSKTKS---VVSYWGIESRKLVKPDGTEWPWFCFTPWDTYRADTSIDME 119

Query: 126 KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLR 185
           KHH P +  DK+A + V+SLR P DLFFQRR+   A++LETVAAVP MVGGMLLH +SLR
Sbjct: 120 KHHKPKSVPDKVAYYAVRSLRVPMDLFFQRRHASHALLLETVAAVPPMVGGMLLHLRSLR 179

Query: 186 RFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPK 245
           RFEHSGGWI+AL+EEAENERMHLMTF+EV +P W+ERALV A QGVF NAYF+GYL+SPK
Sbjct: 180 RFEHSGGWIRALMEEAENERMHLMTFLEVTQPNWWERALVMAAQGVFVNAYFVGYLVSPK 239

Query: 246 FAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRAD 305
           FAHR VGYLEEEA+HSYTE+LK+L+ G IEN PAPAIA DYWRLP ++TLKDVV V+RAD
Sbjct: 240 FAHRFVGYLEEEAVHSYTEYLKDLEAGKIENTPAPAIAIDYWRLPADATLKDVVTVIRAD 299

Query: 306 EAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           EAHHRD NHYASDIHYQG  L+E+PAP+GYH
Sbjct: 300 EAHHRDANHYASDIHYQGLTLKETPAPIGYH 330


>gi|9759397|dbj|BAB09852.1| alternative oxidase 2 [Arabidopsis thaliana]
          Length = 282

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 192/278 (69%), Positives = 227/278 (81%), Gaps = 7/278 (2%)

Query: 61  QQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPK--VNKDDGSEWKWNCFRPWEAYEA 118
           ++++EN+        GGS       + SYWG+E  K  + + DGS+W WNCF PWE Y+A
Sbjct: 10  EKKDENLTVKKGQNGGGS-----VAVPSYWGIETAKMKITRKDGSDWPWNCFMPWETYQA 64

Query: 119 DLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGML 178
           +LSIDLKKHH P   +DK+A   VK LR PTD+FFQRRYGCRAMMLETVAAVPGMVGGML
Sbjct: 65  NLSIDLKKHHVPKNIADKVAYRIVKLLRIPTDIFFQRRYGCRAMMLETVAAVPGMVGGML 124

Query: 179 LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 238
           LH KS+R+FEHSGGWIKALLEEAENERMHLMT ME+ KPKWYER LV  VQG+FFN++F+
Sbjct: 125 LHLKSIRKFEHSGGWIKALLEEAENERMHLMTMMELVKPKWYERLLVMLVQGIFFNSFFV 184

Query: 239 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDV 298
            Y+ISP+ AHR+VGYLEEEAIHSYTEFLK++D G IENV APAIA DYWRLP ++TLKDV
Sbjct: 185 CYVISPRLAHRVVGYLEEEAIHSYTEFLKDIDNGKIENVAAPAIAIDYWRLPKDATLKDV 244

Query: 299 VLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           V V+RADEAHHRDVNH+ASDI  QG++LRE+ AP+GYH
Sbjct: 245 VTVIRADEAHHRDVNHFASDIRNQGKELREAAAPIGYH 282


>gi|30697967|ref|NP_201226.2| alternative oxidase 2 [Arabidopsis thaliana]
 gi|21264382|sp|O22049.2|AOX2_ARATH RecName: Full=Ubiquinol oxidase 2, mitochondrial; AltName:
           Full=Alternative oxidase 2; Flags: Precursor
 gi|15216224|dbj|BAA22636.2| alternative oxidase [Arabidopsis thaliana]
 gi|67633916|gb|AAY78882.1| mitochondrial alternative oxidase 2 [Arabidopsis thaliana]
 gi|332010472|gb|AED97855.1| alternative oxidase 2 [Arabidopsis thaliana]
          Length = 353

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/295 (66%), Positives = 230/295 (77%), Gaps = 15/295 (5%)

Query: 57  GEKEQQREENVQTTGAAAAGGSGNKDEKRIV-------------SYWGVEAPK--VNKDD 101
           G K  Q   N++  G ++A     KDE   V             SYWG+E  K  + + D
Sbjct: 59  GSKHVQGNFNLRWMGMSSASAMEKKDENLTVKKGQNGGGSVAVPSYWGIETAKMKITRKD 118

Query: 102 GSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRA 161
           GS+W WNCF PWE Y+A+LSIDLKKHH P   +DK+A   VK LR PTD+FFQRRYGCRA
Sbjct: 119 GSDWPWNCFMPWETYQANLSIDLKKHHVPKNIADKVAYRIVKLLRIPTDIFFQRRYGCRA 178

Query: 162 MMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYE 221
           MMLETVAAVPGMVGGMLLH KS+R+FEHSGGWIKALLEEAENERMHLMT ME+ KPKWYE
Sbjct: 179 MMLETVAAVPGMVGGMLLHLKSIRKFEHSGGWIKALLEEAENERMHLMTMMELVKPKWYE 238

Query: 222 RALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPA 281
           R LV  VQG+FFN++F+ Y+ISP+ AHR+VGYLEEEAIHSYTEFLK++D G IENV APA
Sbjct: 239 RLLVMLVQGIFFNSFFVCYVISPRLAHRVVGYLEEEAIHSYTEFLKDIDNGKIENVAAPA 298

Query: 282 IATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           IA DYWRLP ++TLKDVV V+RADEAHHRDVNH+ASDI  QG++LRE+ AP+GYH
Sbjct: 299 IAIDYWRLPKDATLKDVVTVIRADEAHHRDVNHFASDIRNQGKELREAAAPIGYH 353


>gi|302782061|ref|XP_002972804.1| hypothetical protein SELMODRAFT_232012 [Selaginella moellendorffii]
 gi|300159405|gb|EFJ26025.1| hypothetical protein SELMODRAFT_232012 [Selaginella moellendorffii]
          Length = 302

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/304 (65%), Positives = 232/304 (76%), Gaps = 15/304 (4%)

Query: 33  RHLSTFLVRAPILGSRNRSTLALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGV 92
           R +ST    AP+  S+  + L   G+  ++++E               K +  I  YWG+
Sbjct: 14  RRISTPSAAAPLASSKIAAVLPGRGQPPEKKDE---------------KKDVVISDYWGI 58

Query: 93  EAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLF 152
              K+  + G  W WN FRP EAY  DL+IDLKKHH P +  DK+A WTVK+LR PTD+F
Sbjct: 59  LPKKLVDEQGKPWPWNSFRPTEAYAPDLTIDLKKHHNPVSVVDKLAYWTVKTLRIPTDIF 118

Query: 153 FQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFM 212
           FQRRYGCRAMMLETVA VPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFM
Sbjct: 119 FQRRYGCRAMMLETVAGVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFM 178

Query: 213 EVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKG 272
           EV +PKWYERALVF VQGVFFNAYFL Y++ P+ AHR+VGYLEEEAIHSYTE+LKE+DKG
Sbjct: 179 EVVQPKWYERALVFTVQGVFFNAYFLCYVLFPRLAHRIVGYLEEEAIHSYTEYLKEIDKG 238

Query: 273 NIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 332
            I N PAPAIA DYWRLP ++ ++DVV VVRADEAHHRDVNH+A+DIH  G++LR + AP
Sbjct: 239 TIPNAPAPAIAIDYWRLPKDAKMRDVVEVVRADEAHHRDVNHFAADIHKAGKELRSAAAP 298

Query: 333 LGYH 336
           L YH
Sbjct: 299 LSYH 302


>gi|297851678|ref|XP_002893720.1| At1g32350/F5D14.4 [Arabidopsis lyrata subsp. lyrata]
 gi|297339562|gb|EFH69979.1| At1g32350/F5D14.4 [Arabidopsis lyrata subsp. lyrata]
          Length = 315

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 196/310 (63%), Positives = 240/310 (77%), Gaps = 19/310 (6%)

Query: 27  LAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKEQQREENVQTTGAAAAGGSGNKDEKRI 86
           + G    HLST  VR     S + S+ A G     Q E+ VQT            D K +
Sbjct: 25  IRGHVISHLST--VR---FLSSDTSSPASGN---NQPEKPVQTA-----------DGKVM 65

Query: 87  VSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLR 146
            +YWG+   K+ K DGS WKWNCF+PW++Y+ D+SID+ KHH P+ F+DK A WTV++L+
Sbjct: 66  STYWGIPPAKITKPDGSAWKWNCFQPWDSYKPDVSIDVTKHHKPSNFTDKFAYWTVQTLK 125

Query: 147 WPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERM 206
            P  LFFQR++ C AM+LETVAAVPGMVGGMLLH KSLRRFEHSGGWIKALLEEAENERM
Sbjct: 126 IPVQLFFQRKHMCHAMLLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKALLEEAENERM 185

Query: 207 HLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFL 266
           HLMTF+E+++PKWYERA+VF VQG FFNAYFL Y+ISPK AHR+ GYLEEEA++SYTEFL
Sbjct: 186 HLMTFIELSQPKWYERAIVFTVQGAFFNAYFLAYVISPKLAHRITGYLEEEAVNSYTEFL 245

Query: 267 KELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQL 326
           K++D G  EN PAPAIA DYWRLP ++TL+DVV V+RADEAHHRD+NHYASDI ++G +L
Sbjct: 246 KDIDAGKFENSPAPAIAIDYWRLPKDATLRDVVYVIRADEAHHRDINHYASDIQFKGHEL 305

Query: 327 RESPAPLGYH 336
           +E+PAP+GYH
Sbjct: 306 KEAPAPIGYH 315


>gi|21553592|gb|AAM62685.1| oxidase, putative [Arabidopsis thaliana]
          Length = 318

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/336 (58%), Positives = 249/336 (74%), Gaps = 18/336 (5%)

Query: 1   MMYRGGVRLFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKE 60
           M YR    ++ TL    +S+  ++ +  G    HL + L    +L S   S ++      
Sbjct: 1   MSYRS---IYRTLRPVLSSSVQSSGLGIGGFRGHLISHLPNVRLLSSDTSSPVS----GN 53

Query: 61  QQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADL 120
            Q E  ++T            D K I +YWG+   K+ K DGS WKWNCF+PW++Y+ D+
Sbjct: 54  NQPENPIRTA-----------DGKVISTYWGIPPTKITKPDGSAWKWNCFQPWDSYKPDV 102

Query: 121 SIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH 180
           SID+ KHH P+ F+DK A WTV++L+ P  LFFQR++ C AM+LETVAAVPGMVG MLLH
Sbjct: 103 SIDVTKHHKPSNFTDKFAYWTVQTLKIPVQLFFQRKHMCHAMLLETVAAVPGMVGWMLLH 162

Query: 181 CKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGY 240
            KSLRRFEHSGGWIKALLEEAENERMHLMTF+E+++PKWYERA+VF VQGVFFNAYFL Y
Sbjct: 163 LKSLRRFEHSGGWIKALLEEAENERMHLMTFIELSQPKWYERAIVFTVQGVFFNAYFLAY 222

Query: 241 LISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVL 300
           +ISPK AHR+ GYLEEEA++SYTEFLK++D G  EN PAPAIA DYWRLP ++TL+DVV 
Sbjct: 223 VISPKLAHRITGYLEEEAVNSYTEFLKDIDAGKFENSPAPAIAIDYWRLPKDATLRDVVY 282

Query: 301 VVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           V+RADEAHHRD+NHYASDI ++G +L+E+PAP+GYH
Sbjct: 283 VIRADEAHHRDINHYASDIQFKGHELKEAPAPIGYH 318


>gi|242077036|ref|XP_002448454.1| hypothetical protein SORBIDRAFT_06g027420 [Sorghum bicolor]
 gi|241939637|gb|EES12782.1| hypothetical protein SORBIDRAFT_06g027420 [Sorghum bicolor]
          Length = 314

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/331 (61%), Positives = 240/331 (72%), Gaps = 31/331 (9%)

Query: 6   GVRLFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKEQQREE 65
           G RLF+   A   +  AAARIL  +                    S+ A   E+ Q+ E 
Sbjct: 15  GPRLFA---AEPLTVPAAARILPARM-------------------SSTAAAPEQRQKPE- 51

Query: 66  NVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLK 125
                   A    G    K +VSYWG++  K+ K+DG+EW+W CFRPW+ Y AD SID+K
Sbjct: 52  --------APAPEGQDKIKAVVSYWGIQPRKLVKEDGTEWRWFCFRPWDTYRADTSIDMK 103

Query: 126 KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLR 185
           KHH P    DK+A W VKSL  P  LFFQRR+   A++LETVAAVPGMVGGMLLH  SLR
Sbjct: 104 KHHEPKALPDKLAYWLVKSLIVPKQLFFQRRHASHALLLETVAAVPGMVGGMLLHLGSLR 163

Query: 186 RFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPK 245
           RFEHSGGWI+ALLEEAENERMHLMTF+EVA+PKW+ERALV A QGVFFNAYF+ YL SPK
Sbjct: 164 RFEHSGGWIRALLEEAENERMHLMTFLEVAQPKWWERALVLAAQGVFFNAYFVAYLASPK 223

Query: 246 FAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRAD 305
           FAHR VGYLEEEA+HSYTE+LK+L+ G IEN PAPAIA DYWRLP ++ LKDVV VVRAD
Sbjct: 224 FAHRFVGYLEEEAVHSYTEYLKDLEAGVIENTPAPAIAIDYWRLPADAKLKDVVTVVRAD 283

Query: 306 EAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           EAHHRDVNH+ASDIHYQG +L+++PAPLGYH
Sbjct: 284 EAHHRDVNHFASDIHYQGMKLKDTPAPLGYH 314


>gi|226498802|ref|NP_001147743.1| transposon protein [Zea mays]
 gi|195613414|gb|ACG28537.1| transposon protein [Zea mays]
 gi|414585626|tpg|DAA36197.1| TPA: alternative oxidase [Zea mays]
          Length = 329

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 188/257 (73%), Positives = 220/257 (85%)

Query: 80  NKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMAL 139
            +D+K +VSYWG+E  K+ K+DG+EW+W CFRPW+ Y AD SID+KKHH P    DK+A 
Sbjct: 73  GQDKKAVVSYWGIEPRKLVKEDGTEWRWFCFRPWDTYRADTSIDMKKHHEPKALPDKLAY 132

Query: 140 WTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLE 199
           W VKSL  P  LFFQRR+   A++LETVAAVPGMVGGMLLH +SLRRFEHSGGWI+ALLE
Sbjct: 133 WLVKSLVVPKQLFFQRRHASHALLLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRALLE 192

Query: 200 EAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAI 259
           EAENERMHLMTF+EVA+PKW+ERALV A QGV+FNAYF+ YL SPKFAHR VGYLEEEA+
Sbjct: 193 EAENERMHLMTFLEVAQPKWWERALVLAAQGVYFNAYFVAYLASPKFAHRFVGYLEEEAV 252

Query: 260 HSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
           HSYTE+LK+L+ G I+N PAPAIA DYWRLP ++ LKDVV VVRADEAHHRDVNH+ASDI
Sbjct: 253 HSYTEYLKDLEAGIIDNTPAPAIAIDYWRLPADARLKDVVAVVRADEAHHRDVNHFASDI 312

Query: 320 HYQGRQLRESPAPLGYH 336
           HYQG +LR++PAPLGYH
Sbjct: 313 HYQGMKLRDTPAPLGYH 329


>gi|351724097|ref|NP_001235766.1| ubiquinol oxidase 2, mitochondrial [Glycine max]
 gi|3913067|sp|Q41266.2|AOX2_SOYBN RecName: Full=Ubiquinol oxidase 2, mitochondrial; AltName:
           Full=Alternative oxidase 2; Flags: Precursor
 gi|1946336|gb|AAB97285.1| alternative oxidase 2a [Glycine max]
          Length = 333

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 186/249 (74%), Positives = 219/249 (87%)

Query: 88  SYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRW 147
           SYWG+  PKV ++DG+EW WNCF PWE+Y +++SIDL KHH P    DK+A  TVK LR 
Sbjct: 85  SYWGISRPKVVREDGTEWPWNCFMPWESYRSNVSIDLTKHHVPKNVLDKVAYRTVKLLRI 144

Query: 148 PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMH 207
           PTDLFF+RRYGCRAMMLETVAAVPGMVGGMLLH +SLR+F+ SGGWIKALLEEAENERMH
Sbjct: 145 PTDLFFKRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALLEEAENERMH 204

Query: 208 LMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLK 267
           LMT +E+ KPKWYER LV AVQGVFFNA+F+ Y++SPK AHR+VGYLEEEAIHSYTE+LK
Sbjct: 205 LMTMVELVKPKWYERLLVLAVQGVFFNAFFVLYILSPKVAHRIVGYLEEEAIHSYTEYLK 264

Query: 268 ELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLR 327
           +L+ G IENVPAPAIA DYWRLP ++ LKDV+ V+RADEAHHRDVNH+ASDIH+QG++LR
Sbjct: 265 DLESGAIENVPAPAIAIDYWRLPKDARLKDVITVIRADEAHHRDVNHFASDIHFQGKELR 324

Query: 328 ESPAPLGYH 336
           E+PAP+GYH
Sbjct: 325 EAPAPIGYH 333


>gi|32130599|gb|AAP68984.1| alternative oxidase 2a [Glycine max]
          Length = 333

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 186/249 (74%), Positives = 219/249 (87%)

Query: 88  SYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRW 147
           SYWG+  PKV ++DG+EW WNCF PWE+Y +++SIDL KHH P    DK+A  TVK LR 
Sbjct: 85  SYWGISRPKVVREDGTEWPWNCFMPWESYRSNVSIDLTKHHVPKNVLDKVAYRTVKLLRI 144

Query: 148 PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMH 207
           PTDLFF+RRYGCRAMMLETVAAVPGMVGGMLLH +SLR+F+ SGGWIKALLEEAENERMH
Sbjct: 145 PTDLFFKRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALLEEAENERMH 204

Query: 208 LMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLK 267
           LMT +E+ KPKWYER LV AVQGVFFNA+F+ Y++SPK AHR+VGYLEEEAIHSYTE+LK
Sbjct: 205 LMTMVELVKPKWYERLLVLAVQGVFFNAFFVLYILSPKVAHRIVGYLEEEAIHSYTEYLK 264

Query: 268 ELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLR 327
           +L+ G IENVPAPAIA DYWRLP ++ LKDV+ V+RADEAHHRDVNH+ASDIH+QG++LR
Sbjct: 265 DLESGAIENVPAPAIAIDYWRLPKDARLKDVITVIRADEAHHRDVNHFASDIHFQGKELR 324

Query: 328 ESPAPLGYH 336
           E+PAP+GYH
Sbjct: 325 EAPAPIGYH 333


>gi|296086812|emb|CBI32961.3| unnamed protein product [Vitis vinifera]
          Length = 327

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 187/254 (73%), Positives = 218/254 (85%)

Query: 83  EKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTV 142
           E  + SY G+  PK+ + DG+EW WN F PWE Y AD +IDL KHH P TF DK+A  TV
Sbjct: 74  EVDVSSYCGISRPKIVRKDGTEWPWNSFVPWETYHADTAIDLSKHHVPKTFVDKVAYRTV 133

Query: 143 KSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAE 202
           K LR PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLR+FEHSGGW+KALLEEAE
Sbjct: 134 KLLRIPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFEHSGGWVKALLEEAE 193

Query: 203 NERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSY 262
           NERMHLMT +E+ +PKWYER LV  VQGVFFNA+F+ Y++SPK AHR+VGYLEEEAIHSY
Sbjct: 194 NERMHLMTMVELVRPKWYERLLVLTVQGVFFNAFFVLYVLSPKAAHRVVGYLEEEAIHSY 253

Query: 263 TEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQ 322
           TEFLK++D G IENVPAPAIA DYWRLP ++TLKDV+ V+RADEAHHRDVNH+ASDIH+Q
Sbjct: 254 TEFLKDIDSGAIENVPAPAIAIDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIHFQ 313

Query: 323 GRQLRESPAPLGYH 336
           G++L E+PAP+GYH
Sbjct: 314 GKKLNEAPAPIGYH 327


>gi|326521476|dbj|BAK00314.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 330

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/293 (66%), Positives = 228/293 (77%), Gaps = 4/293 (1%)

Query: 44  ILGSRNRSTLALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGS 103
           I  +R  ST A     +Q  E++ ++  AAA     NK  K +VSYWG+E  K+ KDDG+
Sbjct: 42  IFPARMASTEAAAPHAKQ--EDDAKSPQAAATPAQQNK--KAVVSYWGIEPRKLVKDDGT 97

Query: 104 EWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMM 163
           EW W CFRPW+ Y  D SI + KHH P    DK+A + V+SLR P DLFFQRR+   A++
Sbjct: 98  EWPWFCFRPWDTYRPDTSIGVAKHHEPRALPDKVAYFVVRSLRVPRDLFFQRRHASHALL 157

Query: 164 LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERA 223
           LETVAAVP MVGG+LLH +SLRRFEHSGGWI+AL+EEAENERMHLMTFMEV +P+W+ERA
Sbjct: 158 LETVAAVPPMVGGVLLHLRSLRRFEHSGGWIRALMEEAENERMHLMTFMEVTQPRWWERA 217

Query: 224 LVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA 283
           LV A QGVFFNAYF+GYLISPKFAHR VGYLEEEA+ SYTE+LK+L+ G IEN PAPAIA
Sbjct: 218 LVLAAQGVFFNAYFVGYLISPKFAHRFVGYLEEEAVESYTEYLKDLEAGLIENTPAPAIA 277

Query: 284 TDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
            DYWRLP ++ LKDVV  VRADEAHHRD NHYASDIHYQG  L ++PAPLGYH
Sbjct: 278 IDYWRLPADARLKDVVTAVRADEAHHRDANHYASDIHYQGMTLNQTPAPLGYH 330


>gi|51860697|gb|AAU11468.1| mitochondrial alternative oxidase 1b [Saccharum officinarum]
          Length = 285

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 184/262 (70%), Positives = 219/262 (83%)

Query: 75  AGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFS 134
           A     +D+K +VSYWG++  K+ K+DG+EW+W CFRPW+ Y AD SID+KKHH P    
Sbjct: 24  APAPEGQDKKAVVSYWGIQPRKLVKEDGTEWRWFCFRPWDTYRADTSIDMKKHHEPKALL 83

Query: 135 DKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWI 194
           DK+A W VKSL  P  LFFQRR+   A++LETVAAVPGMVGGMLLH +SLRRFEHS GWI
Sbjct: 84  DKLAYWLVKSLVVPKQLFFQRRHASHALLLETVAAVPGMVGGMLLHLRSLRRFEHSDGWI 143

Query: 195 KALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYL 254
           +ALLEEAENERMHLMTF+EVA+PKW+ERALV A QGV+FNAYF+ YL SPKFAHR VGYL
Sbjct: 144 RALLEEAENERMHLMTFLEVAQPKWWERALVLAAQGVYFNAYFVAYLASPKFAHRFVGYL 203

Query: 255 EEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNH 314
           EEEA+HSYTE+LK+L+ G I+N P PAIA DYWRLP ++ LKDVV +VRADEAHHRDVNH
Sbjct: 204 EEEAVHSYTEYLKDLEAGIIDNTPVPAIAIDYWRLPADAKLKDVVTIVRADEAHHRDVNH 263

Query: 315 YASDIHYQGRQLRESPAPLGYH 336
           +ASDIHYQG +L+++PAPLGYH
Sbjct: 264 FASDIHYQGMKLKDTPAPLGYH 285


>gi|302760025|ref|XP_002963435.1| hypothetical protein SELMODRAFT_80767 [Selaginella moellendorffii]
 gi|300168703|gb|EFJ35306.1| hypothetical protein SELMODRAFT_80767 [Selaginella moellendorffii]
          Length = 320

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 191/272 (70%), Positives = 224/272 (82%), Gaps = 5/272 (1%)

Query: 66  NVQTTGAAAAGGSGNKDEKRIVS-YWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDL 124
           +V+ + + +AGG G    K ++S YWG+   +  ++DG  W WN FRP +AY  D+SIDL
Sbjct: 53  SVKPSNSGSAGGDGTA--KPVLSHYWGIVTKRPVREDGKAWPWNSFRPTDAYTPDVSIDL 110

Query: 125 KKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSL 184
           KKHH P +F DK A WT  S +    LF QRRYGCRAMMLETVAAVPGMVGGMLLHC+SL
Sbjct: 111 KKHHTPLSFVDKFAYWT--SYKLGLVLFLQRRYGCRAMMLETVAAVPGMVGGMLLHCRSL 168

Query: 185 RRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISP 244
           RRFEHSGGWIKALLEEAENERMHLMTFMEV +PKWYERALVFAVQGVFFNAY + Y+  P
Sbjct: 169 RRFEHSGGWIKALLEEAENERMHLMTFMEVVQPKWYERALVFAVQGVFFNAYMVCYIAFP 228

Query: 245 KFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRA 304
           + AHR+VGYLEEEAIHSYTE++KE+DKGNI N PAPAIA DYWRLP ++ ++DVV VVRA
Sbjct: 229 RLAHRIVGYLEEEAIHSYTEYIKEIDKGNIPNTPAPAIAIDYWRLPKDAKIRDVVQVVRA 288

Query: 305 DEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           DEAHHRDVNH+A+DIH +G+QLRE+PAPLGYH
Sbjct: 289 DEAHHRDVNHFAADIHLKGKQLREAPAPLGYH 320


>gi|115460318|ref|NP_001053759.1| Os04g0600300 [Oryza sativa Japonica Group]
 gi|3218543|dbj|BAA28771.1| alternative oxidase [Oryza sativa Japonica Group]
 gi|3218548|dbj|BAA28774.1| alternative oxidase [Oryza sativa Japonica Group]
 gi|38345774|emb|CAE03472.2| OSJNBa0083N12.12 [Oryza sativa Japonica Group]
 gi|113565330|dbj|BAF15673.1| Os04g0600300 [Oryza sativa Japonica Group]
 gi|116310915|emb|CAH67853.1| B0403H10-OSIGBa0105A11.5 [Oryza sativa Indica Group]
 gi|125549593|gb|EAY95415.1| hypothetical protein OsI_17255 [Oryza sativa Indica Group]
 gi|125591518|gb|EAZ31868.1| hypothetical protein OsJ_16033 [Oryza sativa Japonica Group]
 gi|215741542|dbj|BAG98037.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 335

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 191/296 (64%), Positives = 236/296 (79%), Gaps = 1/296 (0%)

Query: 42  APILGSRNRSTLALGGE-KEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKD 100
           A I  +R  ST + G + KE   E+  +    AAA  +  +++K +VSYWG++ PK+ K+
Sbjct: 40  ARIFPARMASTSSAGADVKEGAAEKLPEPAATAAAAATDPQNKKAVVSYWGIQPPKLVKE 99

Query: 101 DGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCR 160
           DG+EWKW  FRPW+ Y +D SID+ KHH P    DK+A WTV+SL  P DLFFQRR+   
Sbjct: 100 DGTEWKWLSFRPWDTYTSDTSIDVTKHHEPKGLPDKLAYWTVRSLAVPRDLFFQRRHASH 159

Query: 161 AMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWY 220
           A++LETVA VPGMVGGMLLH +SLRRFE SGGWI+ALLEEAENERMHLMTF+EV +P+W+
Sbjct: 160 ALLLETVAGVPGMVGGMLLHLRSLRRFEQSGGWIRALLEEAENERMHLMTFLEVMQPRWW 219

Query: 221 ERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAP 280
           ERALV A QGVFFNAYF+GYL+SPKFAHR VGYLEEEA+ SYTE+LK+L+ G IEN PAP
Sbjct: 220 ERALVLAAQGVFFNAYFVGYLVSPKFAHRFVGYLEEEAVSSYTEYLKDLEAGKIENTPAP 279

Query: 281 AIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           AIA DYWRLP ++TLKDVV V+RADEAHHRD+NH+ASDI  QG +L+++PAP+GYH
Sbjct: 280 AIAIDYWRLPADATLKDVVTVIRADEAHHRDLNHFASDIQQQGMKLKDTPAPIGYH 335


>gi|18176467|gb|AAL60049.1| At1g32350/F5D14.4 [Arabidopsis thaliana]
          Length = 317

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/336 (57%), Positives = 246/336 (73%), Gaps = 19/336 (5%)

Query: 1   MMYRGGVRLFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKE 60
           M YR    ++ TL    +S+  ++ +  G    HL + L    +L S   S ++      
Sbjct: 1   MSYRS---IYRTLRPVLSSSVQSSGLGIGGFRGHLISHLPNVRLLSSDTSSPVS----GN 53

Query: 61  QQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADL 120
            Q E  ++T            D K I +YWG+   K+ K DGS WKWNCF+PW++Y+ D+
Sbjct: 54  NQPENPIRTA-----------DGKVISTYWGIPPTKITKPDGSAWKWNCFQPWDSYKPDV 102

Query: 121 SIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH 180
           SID+ KHH P+ F+DK A WTV++L+ P  LFFQR++ C AM+LETVA VPGMVGGMLLH
Sbjct: 103 SIDVTKHHKPSNFTDKFAYWTVQTLKIPVQLFFQRKHMCHAMLLETVA-VPGMVGGMLLH 161

Query: 181 CKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGY 240
            KSLRRFEHSGGWIKALLEEAENERMHLMTF+E+++PKWYERA+VF VQGVFFNAYFL Y
Sbjct: 162 LKSLRRFEHSGGWIKALLEEAENERMHLMTFIELSQPKWYERAIVFTVQGVFFNAYFLAY 221

Query: 241 LISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVL 300
           +ISPK AHR+ GYLEEEA++SYTEFLK++D G  EN PAPAIA DYWR P ++TL+DVV 
Sbjct: 222 VISPKLAHRITGYLEEEAVNSYTEFLKDIDAGKFENSPAPAIAMDYWRFPKDATLRDVVY 281

Query: 301 VVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           V+RA+EA  RD+NHYASDI ++G +L+E+PAP+GYH
Sbjct: 282 VIRAEEAPPRDINHYASDIQFKGHELKEAPAPIGYH 317


>gi|302776856|ref|XP_002971569.1| hypothetical protein SELMODRAFT_231845 [Selaginella moellendorffii]
 gi|300160701|gb|EFJ27318.1| hypothetical protein SELMODRAFT_231845 [Selaginella moellendorffii]
          Length = 309

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/271 (69%), Positives = 219/271 (80%), Gaps = 14/271 (5%)

Query: 66  NVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLK 125
           +V+ + + +AGG GN D+  +  YWG+   +  ++DG  W WN FRP +AY  D+SIDLK
Sbjct: 53  SVKPSNSGSAGGDGN-DKPVLSHYWGIVTKRPVREDGKAWPWNSFRPSDAYTPDVSIDLK 111

Query: 126 KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLR 185
           KHH P +F DK A WT             RRYGCRAMMLETVAAVPGMVGGMLLHC+SLR
Sbjct: 112 KHHTPLSFVDKFAYWT-------------RRYGCRAMMLETVAAVPGMVGGMLLHCRSLR 158

Query: 186 RFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPK 245
           RFEHSGGWIKALLEEAENERMHLMTFMEV +PKWYERALVFAVQGVFFNAY + Y+  P+
Sbjct: 159 RFEHSGGWIKALLEEAENERMHLMTFMEVVQPKWYERALVFAVQGVFFNAYMVCYIAFPR 218

Query: 246 FAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRAD 305
            AHR+VGYLEEEAIHSYTE++KE+DKGNI N PAPAIA DYWRLP ++ ++DVV VVRAD
Sbjct: 219 LAHRIVGYLEEEAIHSYTEYIKEIDKGNIPNTPAPAIAIDYWRLPKDAKIRDVVQVVRAD 278

Query: 306 EAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           EAHHRDVNH+A+DIH +G+QLRE+PAPLGYH
Sbjct: 279 EAHHRDVNHFAADIHLKGKQLREAPAPLGYH 309


>gi|326519218|dbj|BAJ96608.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 324

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/293 (64%), Positives = 223/293 (76%), Gaps = 10/293 (3%)

Query: 44  ILGSRNRSTLALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGS 103
           I  +R  ST A    K+++  E  Q          G    ++ VSYWG+E  K+ KDDG+
Sbjct: 42  IFPARMASTAAAPHAKQEEATEKPQ----------GATTPEQAVSYWGIEPRKLVKDDGT 91

Query: 104 EWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMM 163
           EW W CFRPW+ Y  D SID+ KHH P    DK+A   V++LR  +DLFFQRR+   A++
Sbjct: 92  EWPWFCFRPWDTYRPDTSIDVAKHHEPRALPDKVAYLIVRTLRAGSDLFFQRRHASHALL 151

Query: 164 LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERA 223
           LETVAAVP MVGG+LLH +SLRRFEHSGGWI+AL+EEAENERMHLMTFMEV +P W+ERA
Sbjct: 152 LETVAAVPPMVGGVLLHLRSLRRFEHSGGWIRALMEEAENERMHLMTFMEVTQPLWWERA 211

Query: 224 LVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA 283
           LV A QGVFFNAYF+GYL+SPKFAHR VGYLEEEA+HSYTE+LK+L+ G IEN PAPAIA
Sbjct: 212 LVLATQGVFFNAYFVGYLVSPKFAHRFVGYLEEEAVHSYTEYLKDLEAGLIENTPAPAIA 271

Query: 284 TDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
            DYWRLP ++ LKDVV  VRADEAHHRD NHYASDIHYQG  L ++PAPLGYH
Sbjct: 272 IDYWRLPADARLKDVVTAVRADEAHHRDANHYASDIHYQGMTLNQTPAPLGYH 324


>gi|125581850|gb|EAZ22781.1| hypothetical protein OsJ_06456 [Oryza sativa Japonica Group]
          Length = 404

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 180/227 (79%), Positives = 203/227 (89%)

Query: 110 FRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAA 169
           F+PW+ YEAD++IDL KHH P T  DK+A WTVKSLRWP DLFFQRRYGCRAMMLETVAA
Sbjct: 178 FQPWDTYEADVAIDLTKHHNPATLGDKVARWTVKSLRWPVDLFFQRRYGCRAMMLETVAA 237

Query: 170 VPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQ 229
           VPGMV G +LH +SLRRFEHSGGWI+ALLEEAENERMHLMTFMEV++P+WYERALV AVQ
Sbjct: 238 VPGMVAGAVLHLRSLRRFEHSGGWIRALLEEAENERMHLMTFMEVSQPRWYERALVVAVQ 297

Query: 230 GVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRL 289
           G FFNAY   YL+SP+FAHR+VGYLEEEA+HSYTEFL++LD G I++VPAPAIA DYWRL
Sbjct: 298 GAFFNAYLASYLLSPRFAHRIVGYLEEEAVHSYTEFLRDLDAGKIDDVPAPAIAIDYWRL 357

Query: 290 PPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           P ++TL+DVV+VVRADEAHHRDVNHYASDIHYQG  LRE  APLGYH
Sbjct: 358 PADATLRDVVMVVRADEAHHRDVNHYASDIHYQGHALREVAAPLGYH 404


>gi|208436660|gb|ACI28876.1| mitochondrial alternative oxidase 1a, partial [Vitis vinifera]
          Length = 297

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/314 (64%), Positives = 236/314 (75%), Gaps = 19/314 (6%)

Query: 1   MMYRGGVRLFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKE 60
           MM R  ++L ST T RT        I  G   R    F      LG+RN S+      ++
Sbjct: 2   MMSRSAMKLLSTATVRT--------IHGGGEFRQ--GFFA----LGARNLSSTVSAVREK 47

Query: 61  QQREENVQTTGAAAAGGSG-NKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEAD 119
            Q E   ++    AAG SG    +K +VSYWGV   K+ K+DG+EWKW+CF+P EAY+AD
Sbjct: 48  PQTEPGSRS----AAGHSGFEGGDKSVVSYWGVAPVKLTKEDGTEWKWSCFKPSEAYKAD 103

Query: 120 LSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLL 179
           +SIDL KHH P  +++K+A W VK LR PTD+FF+RR+  RAMMLETVAAVPGMVGGMLL
Sbjct: 104 VSIDLGKHHVPRVWTEKVAYWGVKMLRLPTDIFFKRRFEMRAMMLETVAAVPGMVGGMLL 163

Query: 180 HCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLG 239
           HCKSLRRFEHSGGWI+ LLEEAENERMHLMTFMEVAKP+WYERALVFAVQG+F+N YF+ 
Sbjct: 164 HCKSLRRFEHSGGWIRVLLEEAENERMHLMTFMEVAKPRWYERALVFAVQGIFWNFYFVA 223

Query: 240 YLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVV 299
           Y+ISPK AHR VGYLEEEAIHS  EF+KELD GNI NVPAPAIA DYWRL P+STL+DVV
Sbjct: 224 YVISPKVAHRAVGYLEEEAIHSCNEFIKELDSGNIPNVPAPAIAIDYWRLAPDSTLRDVV 283

Query: 300 LVVRADEAHHRDVN 313
           +V RADEAHHRDVN
Sbjct: 284 MVARADEAHHRDVN 297


>gi|168044781|ref|XP_001774858.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673752|gb|EDQ60270.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 289

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/268 (70%), Positives = 227/268 (84%), Gaps = 4/268 (1%)

Query: 72  AAAAGGSGNKDEK--RIVSYWGVEAPKV-NKDDGSEWKWNCFRPWEAYEADLSIDLKKHH 128
           A    GS  K  K   I SYWGV  PKV +K+DG+ WKW CF P E Y  D++IDL+K H
Sbjct: 23  ATVKSGSEEKFVKATDISSYWGV-VPKVQHKEDGTPWKWTCFTPHETYYPDVTIDLEKTH 81

Query: 129 APTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE 188
           A  T++D +A W VKSLR P+D+FF++RY  RAMMLETVAAVPGMVGGMLLHCKSLR+F+
Sbjct: 82  ARKTYTDSIAYWLVKSLRVPSDMFFKKRYDVRAMMLETVAAVPGMVGGMLLHCKSLRKFQ 141

Query: 189 HSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAH 248
           +SGGWIKALLEEAENERMHLMTFMEVA+PKW+ERALVFAVQGVFFNAYFL YL+SPK AH
Sbjct: 142 NSGGWIKALLEEAENERMHLMTFMEVAQPKWWERALVFAVQGVFFNAYFLLYLVSPKIAH 201

Query: 249 RMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAH 308
           R+ GYLEEEA++SYT+FLK +D+G+ +N PAP+IA DYWRLP ++T++DVV+VVRADEAH
Sbjct: 202 RITGYLEEEAVYSYTQFLKMIDEGHFQNGPAPSIAIDYWRLPKDATIRDVVMVVRADEAH 261

Query: 309 HRDVNHYASDIHYQGRQLRESPAPLGYH 336
           HRDVNH+A+DI  +G++LRESPAP+GYH
Sbjct: 262 HRDVNHFAADILDRGKELRESPAPVGYH 289


>gi|302800473|ref|XP_002981994.1| hypothetical protein SELMODRAFT_421378 [Selaginella moellendorffii]
 gi|300150436|gb|EFJ17087.1| hypothetical protein SELMODRAFT_421378 [Selaginella moellendorffii]
          Length = 335

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 180/255 (70%), Positives = 214/255 (83%)

Query: 82  DEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWT 141
           D+++  +YWG+   K  ++DG+ W WNCF+P ++Y +D SID+KKHH P    DK+AL T
Sbjct: 81  DDQQFSNYWGIITKKTLREDGTPWPWNCFKPSDSYVSDTSIDVKKHHIPDAVVDKVALKT 140

Query: 142 VKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEA 201
           VK LR  +DLFFQ R+GC A++LETVAAVPGMVGGMLLHCKSLR+FEHSGGWIKALLEEA
Sbjct: 141 VKFLRALSDLFFQERHGCHAVLLETVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEA 200

Query: 202 ENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHS 261
           ENERMHLMTFMEV +PKWYERALV AVQGVFFN YF  YLI P+ AHR VGYLEEEA+ S
Sbjct: 201 ENERMHLMTFMEVFQPKWYERALVLAVQGVFFNGYFALYLIFPRLAHRFVGYLEEEAVAS 260

Query: 262 YTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHY 321
           YTEFL  LDKG++ N PAPAIA DYWRLP ++TL+DVV VVRADEAHHRDVNH+A+D H 
Sbjct: 261 YTEFLAALDKGSMPNTPAPAIAIDYWRLPSDATLRDVVFVVRADEAHHRDVNHFAADAHL 320

Query: 322 QGRQLRESPAPLGYH 336
           QG++L++SPAP+GYH
Sbjct: 321 QGKELKDSPAPIGYH 335


>gi|17154769|emb|CAD12835.1| putative alternative oxidase [Vigna unguiculata]
 gi|70799005|gb|AAZ09195.1| mitochondrial alternative oxidase 2b [Vigna unguiculata]
          Length = 326

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 173/251 (68%), Positives = 215/251 (85%)

Query: 86  IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 145
           I SYWG+  PKV ++DG+EW WNCF PW+ Y +D+SID+ KHH P + +DK+A  +VK L
Sbjct: 76  ISSYWGISRPKVRREDGTEWPWNCFMPWDTYHSDVSIDVTKHHTPKSLTDKVAFRSVKFL 135

Query: 146 RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 205
           R  +DL+F+ RYGC AMMLET+AAVPGMVGGMLLH KSLR+F+HSGGWIKALLEEAENER
Sbjct: 136 RVLSDLYFKERYGCHAMMLETIAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENER 195

Query: 206 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 265
           MHLMT +E+ +PKW+ER L+F  QGVFFNA+F+ YL+SPK AHR VGYLEEEA+ SYT+ 
Sbjct: 196 MHLMTMVELVQPKWHERLLIFTAQGVFFNAFFVFYLLSPKAAHRFVGYLEEEAVISYTQH 255

Query: 266 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 325
           L+ ++ G +ENVPAPAIA DYWRLP ++TLKDVV V+RADEAHHRDVNH+ASDIH+QG++
Sbjct: 256 LEAIESGKVENVPAPAIAIDYWRLPKDATLKDVVTVIRADEAHHRDVNHFASDIHHQGKE 315

Query: 326 LRESPAPLGYH 336
           LR++PAP+GYH
Sbjct: 316 LRDAPAPIGYH 326


>gi|351728013|ref|NP_001238460.1| alternative oxidase 3, mitochondrial [Glycine max]
 gi|3023305|sp|O03376.1|AOX3_SOYBN RecName: Full=Alternative oxidase 3, mitochondrial; Flags:
           Precursor
 gi|1946338|gb|AAB97286.1| alternative oxidase 2b [Glycine max]
          Length = 326

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/327 (57%), Positives = 236/327 (72%), Gaps = 20/327 (6%)

Query: 22  AAARILAGQTNRHLSTFLVRAPILGSRN------------RSTLALGGEKEQQREENVQT 69
           +AAR L G   R     L  A I+  R+            R    L   K+Q  EE    
Sbjct: 8   SAARALLGGGGRSYYRQLSTAAIVEQRHQHGGGAFGSFHLRRMSTLPEVKDQHSEEKKNE 67

Query: 70  TGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHA 129
                  G+ N     + SYWG+  PKV ++DG+EW WNCF PW++Y +D+SID+ KHH 
Sbjct: 68  VN-----GTSNA---VVTSYWGITRPKVRREDGTEWPWNCFMPWDSYHSDVSIDVTKHHT 119

Query: 130 PTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEH 189
           P + +DK+A   VK LR  +D++F+ RYGC AMMLET+AAVPGMVGGMLLH KSLR+F+H
Sbjct: 120 PKSLTDKVAFRAVKFLRVLSDIYFKERYGCHAMMLETIAAVPGMVGGMLLHLKSLRKFQH 179

Query: 190 SGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHR 249
           SGGWIKALLEEAENERMHLMT +E+ KP W+ER L+F  QGVFFNA+F+ YL+SPK AHR
Sbjct: 180 SGGWIKALLEEAENERMHLMTMVELVKPSWHERLLIFTAQGVFFNAFFVFYLLSPKAAHR 239

Query: 250 MVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHH 309
            VGYLEEEA+ SYT+ L  ++ G +ENVPAPAIA DYWRLP ++TLKDVV V+RADEAHH
Sbjct: 240 FVGYLEEEAVISYTQHLNAIESGKVENVPAPAIAIDYWRLPKDATLKDVVTVIRADEAHH 299

Query: 310 RDVNHYASDIHYQGRQLRESPAPLGYH 336
           RDVNH+ASDIH+QG++L+E+PAP+GYH
Sbjct: 300 RDVNHFASDIHHQGKELKEAPAPIGYH 326


>gi|32130598|gb|AAP68983.1| alternative oxidase 2b [Glycine max]
          Length = 326

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/327 (57%), Positives = 234/327 (71%), Gaps = 20/327 (6%)

Query: 22  AAARILAGQTNRHLSTFLVRAPILGSRN------------RSTLALGGEKEQQREENVQT 69
           +AAR L G   R     L  A I+  R+            R    L   K+Q  EE    
Sbjct: 8   SAARALLGGGGRSYYRQLSTAAIVEQRHQHGGGAFGSFHLRRMSTLPEVKDQHSEEKKNE 67

Query: 70  TGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHA 129
                     +     + SYWG+  PKV ++DG+EW WNCF PW++Y +D+SID+ KHH 
Sbjct: 68  VN--------DTSNAVVTSYWGITRPKVRREDGTEWPWNCFMPWDSYHSDVSIDVTKHHT 119

Query: 130 PTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEH 189
           P + +DK+A   VK LR  +D++F+ RYGC AMMLET+AAVPGMVGGMLLH KSLR+F+H
Sbjct: 120 PKSLTDKVAFRAVKFLRVLSDIYFKERYGCHAMMLETIAAVPGMVGGMLLHLKSLRKFQH 179

Query: 190 SGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHR 249
           SGGWIKALLEEAENERMHLMT +E+ KP W+ER L+F  QGVFFNA+F+ YL+SPK AHR
Sbjct: 180 SGGWIKALLEEAENERMHLMTMVELVKPSWHERLLIFTAQGVFFNAFFVFYLLSPKAAHR 239

Query: 250 MVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHH 309
            VGYLEEEA+ SYT+ L  ++ G +ENVPAPAIA DYWRLP ++TLKDVV V+RADEAHH
Sbjct: 240 FVGYLEEEAVISYTQHLNAIESGKVENVPAPAIAIDYWRLPKDATLKDVVTVIRADEAHH 299

Query: 310 RDVNHYASDIHYQGRQLRESPAPLGYH 336
           RDVNH+ASDIH+QG++L+E+PAP+GYH
Sbjct: 300 RDVNHFASDIHHQGKELKEAPAPIGYH 326


>gi|357490753|ref|XP_003615664.1| Alternative oxidase [Medicago truncatula]
 gi|355516999|gb|AES98622.1| Alternative oxidase [Medicago truncatula]
          Length = 275

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 178/283 (62%), Positives = 221/283 (78%), Gaps = 10/283 (3%)

Query: 54  ALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPW 113
            L  +K+Q  EEN           + N     + SYWG+  PKV ++DG+EW WNCF PW
Sbjct: 3   TLPEKKDQHSEEN----------KNSNDSNTVVSSYWGITRPKVKREDGTEWPWNCFMPW 52

Query: 114 EAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGM 173
           E+Y +D+SID+ KHH P TF DK A  +VK LR  +DL+F+ RYGC AMMLET+AAVP M
Sbjct: 53  ESYSSDVSIDVTKHHVPKTFGDKFAFRSVKFLRVLSDLYFKERYGCHAMMLETIAAVPPM 112

Query: 174 VGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFF 233
           VGGMLLH KSLR+F+H+GGWIKALLEEAENERMHLMT +E+ KP W+ER LV   QGVFF
Sbjct: 113 VGGMLLHLKSLRKFQHTGGWIKALLEEAENERMHLMTMVELVKPSWHERLLVITAQGVFF 172

Query: 234 NAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNS 293
           NA+F+ Y++SPK AHR VGYLEEEA+ SYT+ L  ++ G +ENVPAPAIA DYWRLP ++
Sbjct: 173 NAFFVFYILSPKTAHRFVGYLEEEAVISYTQHLNAIESGKVENVPAPAIAIDYWRLPKDA 232

Query: 294 TLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           TLKDV+ V+RADEAHHRDVNH+ASDIH+QG++L+E+PAP+GYH
Sbjct: 233 TLKDVITVIRADEAHHRDVNHFASDIHHQGKELKEAPAPIGYH 275


>gi|414585625|tpg|DAA36196.1| TPA: hypothetical protein ZEAMMB73_161603 [Zea mays]
          Length = 332

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/306 (64%), Positives = 228/306 (74%), Gaps = 34/306 (11%)

Query: 13  LTARTASTEA-AARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKEQQREENVQTTG 71
           L AR AST A AAR  AG   RH                      G  E+  EE      
Sbjct: 41  LPARMASTAAEAAREDAGANKRH----------------------GGTEKHEEE------ 72

Query: 72  AAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPT 131
             AAGG   + +K +VSYWG++ PK+ K+DG+EWKW  FRPW+AY +D SID+ KHHAPT
Sbjct: 73  --AAGG---QSKKAVVSYWGIDTPKLVKEDGTEWKWTSFRPWDAYTSDTSIDIGKHHAPT 127

Query: 132 TFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSG 191
           T  DK A   VKSLR P DLFFQRR+   A++LETVAAVPGMVGGMLLH +SLRRFEHSG
Sbjct: 128 TLPDKAAYLIVKSLRVPMDLFFQRRHASHALLLETVAAVPGMVGGMLLHLRSLRRFEHSG 187

Query: 192 GWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMV 251
           GWI+ALLEEAENERMHLMTF+EV +P+W+ERALV   QGVFFNAYF+GYL+SPKFAHR+V
Sbjct: 188 GWIRALLEEAENERMHLMTFLEVTQPRWWERALVLTAQGVFFNAYFVGYLLSPKFAHRVV 247

Query: 252 GYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRD 311
           GYLEEEA+HSYTE+LK+L+ G I+N PAPAIA DYWRLP ++ LKDVV VVRADEAHHRD
Sbjct: 248 GYLEEEAVHSYTEYLKDLEAGIIDNTPAPAIAIDYWRLPADAKLKDVVTVVRADEAHHRD 307

Query: 312 VNHYAS 317
           VNH+AS
Sbjct: 308 VNHFAS 313


>gi|302808760|ref|XP_002986074.1| hypothetical protein SELMODRAFT_446465 [Selaginella moellendorffii]
 gi|300146222|gb|EFJ12893.1| hypothetical protein SELMODRAFT_446465 [Selaginella moellendorffii]
          Length = 335

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 178/254 (70%), Positives = 213/254 (83%)

Query: 83  EKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTV 142
           +++  +YWG+   K  ++DG+ W WNCF+P ++Y +D SID+KKHH P    DK+AL TV
Sbjct: 82  DQQFSNYWGIITKKTLREDGTPWPWNCFKPSDSYVSDTSIDVKKHHIPDAVVDKVALKTV 141

Query: 143 KSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAE 202
           K LR  +DLFFQ R+GC A++LETVAAVPGMVGGMLLHCKSLR+FEHSGGWIKALLEEAE
Sbjct: 142 KFLRVLSDLFFQERHGCHAVLLETVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAE 201

Query: 203 NERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSY 262
           NERMHLMTFMEV +PKWYERALV AVQGVFFN YF  YLI P+ AHR VGYLEEEA+ SY
Sbjct: 202 NERMHLMTFMEVFQPKWYERALVLAVQGVFFNGYFALYLIFPRLAHRFVGYLEEEAVASY 261

Query: 263 TEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQ 322
           T+FL  LDKG++ N PAPAIA DYWRLP ++TL+DVV VVRADEAHHRDVNH+A+D H Q
Sbjct: 262 TDFLAALDKGSMPNTPAPAIAIDYWRLPSDATLRDVVFVVRADEAHHRDVNHFAADAHLQ 321

Query: 323 GRQLRESPAPLGYH 336
           G++L++SPAP+GYH
Sbjct: 322 GKELKDSPAPIGYH 335


>gi|433335541|gb|AGB34164.1| mitochondrial alternative oxidase 1c [Olea europaea subsp.
           europaea]
          Length = 353

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/267 (67%), Positives = 215/267 (80%), Gaps = 1/267 (0%)

Query: 51  STLALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCF 110
           S L   G KE +  + V+   +      G   +  + SYWGV   +  K+DGS W+WNCF
Sbjct: 47  SNLGSKGNKEDEPAQAVKF-DSNFENVDGQNGKAVVSSYWGVPPSRATKEDGSPWRWNCF 105

Query: 111 RPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAV 170
           RPWE Y+AD SID+ KHH  TTF DK A WTV+SL++PT LFFQRR+ C AM+LETVAAV
Sbjct: 106 RPWETYKADTSIDVTKHHKATTFMDKFAYWTVQSLKFPTYLFFQRRHMCHAMLLETVAAV 165

Query: 171 PGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQG 230
           PGMVGGMLLH KS+RRFEHSGGWIKALLEEAENERMHLMTF+E+++PKWY+RALVFAVQG
Sbjct: 166 PGMVGGMLLHLKSIRRFEHSGGWIKALLEEAENERMHLMTFLELSQPKWYQRALVFAVQG 225

Query: 231 VFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLP 290
           VF NAYF+ Y++SPK AHR+VGYLEEEA++SYTEFL +L+KG +EN PAPAIA DYW+LP
Sbjct: 226 VFANAYFVSYVVSPKLAHRIVGYLEEEAVNSYTEFLIDLEKGLVENRPAPAIAIDYWQLP 285

Query: 291 PNSTLKDVVLVVRADEAHHRDVNHYAS 317
             STLKDVV V+RADEAHHRD+NH+AS
Sbjct: 286 SESTLKDVVTVIRADEAHHRDLNHFAS 312


>gi|357490777|ref|XP_003615676.1| Alternative oxidase [Medicago truncatula]
 gi|355517011|gb|AES98634.1| Alternative oxidase [Medicago truncatula]
          Length = 324

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/282 (63%), Positives = 223/282 (79%), Gaps = 10/282 (3%)

Query: 55  LGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWE 114
           L  +K+QQ EE+ +     A           + SYWG+  PKV K+DG+EW WNCF PWE
Sbjct: 53  LPEKKDQQTEESKKDANHNAV----------VSSYWGISRPKVLKEDGTEWPWNCFMPWE 102

Query: 115 AYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMV 174
           +Y +D+SID+ KHH P TF DK A  +VK LR  +DL+F+ RYGC AMMLET+AAVPGMV
Sbjct: 103 SYSSDVSIDVTKHHVPKTFGDKFAFRSVKFLRVLSDLYFKERYGCHAMMLETIAAVPGMV 162

Query: 175 GGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFN 234
           GGMLLH KSLR+F+H+GGWIKALLEEAENERMHLMT +E+ KP W+ER LV   QGVFFN
Sbjct: 163 GGMLLHLKSLRKFQHAGGWIKALLEEAENERMHLMTMVELVKPSWHERLLVITAQGVFFN 222

Query: 235 AYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNST 294
            +F+ Y++SPK AHR VGYLEEEA+ SYT++L  ++ G +ENVPAPAIA DYWRLP ++T
Sbjct: 223 GFFVFYILSPKIAHRFVGYLEEEAVISYTQYLNAIESGKVENVPAPAIAIDYWRLPNDAT 282

Query: 295 LKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           LKDVV V+RADEAHHRDVNH+ASDIH+QG++L+E+PAP+GYH
Sbjct: 283 LKDVVTVIRADEAHHRDVNHFASDIHHQGKELKEAPAPVGYH 324


>gi|388501212|gb|AFK38672.1| unknown [Lotus japonicus]
          Length = 314

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/278 (63%), Positives = 220/278 (79%), Gaps = 5/278 (1%)

Query: 59  KEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEA 118
           K+ Q EE       +    + + +   + SYWG+  PKV ++DG+EW WNCF PW++Y A
Sbjct: 42  KDHQSEEK-----KSEVNRNDSSNNTVVPSYWGITRPKVRREDGTEWPWNCFSPWDSYRA 96

Query: 119 DLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGML 178
           D+SID+ KHH P T +DK+A   VK LR  +DL+F+ RYGC AMMLET+AAVPGMVGGML
Sbjct: 97  DVSIDVTKHHLPKTVTDKVAFRAVKFLRVLSDLYFKERYGCHAMMLETIAAVPGMVGGML 156

Query: 179 LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 238
           LH KSLR+F+HSGGWIKALLEEAENERMHLMT  E+ KP W+ER LV   QGVFFN +F+
Sbjct: 157 LHLKSLRKFQHSGGWIKALLEEAENERMHLMTMTELVKPSWHERLLVITAQGVFFNFFFV 216

Query: 239 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDV 298
            YL+SPK AHR VGYLEEEA+ SYT+ L  +++G +ENVPAPAIA DYWRLP ++TLKDV
Sbjct: 217 FYLLSPKAAHRFVGYLEEEAVISYTDHLNAIERGEVENVPAPAIAIDYWRLPKDATLKDV 276

Query: 299 VLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           V V+RADEAHHRDVNH+ASDIH+QG++L+E+PAP+GYH
Sbjct: 277 VTVIRADEAHHRDVNHFASDIHHQGKELKEAPAPVGYH 314


>gi|12597864|gb|AAG60173.1|AC084110_6 oxidase, putative [Arabidopsis thaliana]
          Length = 287

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 181/336 (53%), Positives = 227/336 (67%), Gaps = 49/336 (14%)

Query: 1   MMYRGGVRLFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKE 60
           M YR    ++ TL    +S+  ++ +  G    HL + L    +L S   S ++      
Sbjct: 1   MSYRS---IYRTLRPVLSSSVQSSGLGIGGFRGHLISHLPNVRLLSSDTSSPVS----GN 53

Query: 61  QQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADL 120
            Q E  ++T            D K I +YWG+   K+ K DGS WKWNCF+PW++Y+ D+
Sbjct: 54  NQPENPIRTA-----------DGKVISTYWGIPPTKITKPDGSAWKWNCFQPWDSYKPDV 102

Query: 121 SIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH 180
           SID                               R++ C AM+LETVAAVPGMVGGMLLH
Sbjct: 103 SID-------------------------------RKHMCHAMLLETVAAVPGMVGGMLLH 131

Query: 181 CKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGY 240
            KSLRRFEHSGGWIKALLEEAENERMHLMTF+E+++PKWYERA+VF VQGVFFNAYFL Y
Sbjct: 132 LKSLRRFEHSGGWIKALLEEAENERMHLMTFIELSQPKWYERAIVFTVQGVFFNAYFLAY 191

Query: 241 LISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVL 300
           +ISPK AHR+ GYLEEEA++SYTEFLK++D G  EN PAPAIA DYWRLP ++TL+DVV 
Sbjct: 192 VISPKLAHRITGYLEEEAVNSYTEFLKDIDAGKFENSPAPAIAIDYWRLPKDATLRDVVY 251

Query: 301 VVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           V+RADEAHHRD+NHYASDI ++G +L+E+PAP+GYH
Sbjct: 252 VIRADEAHHRDINHYASDIQFKGHELKEAPAPIGYH 287


>gi|31322552|gb|AAP35170.1| alternative oxidase [Cucumis sativus]
          Length = 214

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 166/214 (77%), Positives = 191/214 (89%)

Query: 123 DLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCK 182
           DL KHH P TF DK+A   VK LR PTD+FFQRRYGCRA+MLETVAAVPGMVGGMLLH K
Sbjct: 1   DLGKHHQPKTFLDKVAYRVVKLLRIPTDIFFQRRYGCRAVMLETVAAVPGMVGGMLLHLK 60

Query: 183 SLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLI 242
           SLR+F+HSGGWIKALLEEAENERMHLMT +E+ +PKWYER LV  VQGVFFNA+F+ YL+
Sbjct: 61  SLRKFQHSGGWIKALLEEAENERMHLMTMIELVQPKWYERLLVITVQGVFFNAFFVLYLM 120

Query: 243 SPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVV 302
           SPK AHR+VGYLEEEAIHSYTE+LK++++G IENVPAPAIA DYWRLP ++ LKDV+ V+
Sbjct: 121 SPKLAHRIVGYLEEEAIHSYTEYLKDINEGKIENVPAPAIAIDYWRLPKDARLKDVITVI 180

Query: 303 RADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           RADEAHHRDVNH+ASDIH+QG++LRES APLGYH
Sbjct: 181 RADEAHHRDVNHFASDIHFQGKELRESAAPLGYH 214


>gi|147799085|emb|CAN72564.1| hypothetical protein VITISV_018234 [Vitis vinifera]
          Length = 218

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 168/201 (83%), Positives = 183/201 (91%)

Query: 136 KMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIK 195
           K+A W VK LR PTD+FF+RR+  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWI+
Sbjct: 18  KVAYWGVKMLRLPTDIFFKRRFEMRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIR 77

Query: 196 ALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLE 255
            LLEEAENERMHLMTFMEVAKP+WYERALVFAVQG+F+N YF+ Y+ISPK AHR VGYLE
Sbjct: 78  VLLEEAENERMHLMTFMEVAKPRWYERALVFAVQGIFWNFYFVAYVISPKVAHRAVGYLE 137

Query: 256 EEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHY 315
           EEAIHSY EF+KELD GNI NVPAPAIA DYWRL P+STL+DVV+VVRADEAHHRDVNHY
Sbjct: 138 EEAIHSYNEFIKELDSGNIPNVPAPAIAIDYWRLAPDSTLRDVVMVVRADEAHHRDVNHY 197

Query: 316 ASDIHYQGRQLRESPAPLGYH 336
           ASDIHYQG QL+E PAPLGYH
Sbjct: 198 ASDIHYQGLQLKEFPAPLGYH 218


>gi|208436644|gb|ACI28868.1| mitochondrial alternative oxidase 1b, partial [Vitis vinifera]
          Length = 205

 Score =  350 bits (898), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 160/205 (78%), Positives = 181/205 (88%)

Query: 106 KWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLE 165
           KWN FRPWE Y+AD+SID++KHH P  F DK A WTV++L+ PT +FFQR++ C AM+LE
Sbjct: 1   KWNSFRPWETYKADISIDVEKHHKPVKFMDKFAYWTVQALKIPTHMFFQRKHMCHAMLLE 60

Query: 166 TVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV 225
           TVAAVPGMVGGMLLHC+SLRRFE SGGWIKALLEEAENERMHLMTF+E+AKP+WYERALV
Sbjct: 61  TVAAVPGMVGGMLLHCQSLRRFEQSGGWIKALLEEAENERMHLMTFIELAKPQWYERALV 120

Query: 226 FAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATD 285
           FAVQGVFFNAYFL YL SPK AHR+ GYLEEEA+ SYTEFLK+LD G+ ENVPAPAIA D
Sbjct: 121 FAVQGVFFNAYFLTYLASPKVAHRITGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAID 180

Query: 286 YWRLPPNSTLKDVVLVVRADEAHHR 310
           YWRLP  STL+DVV V+RADEAHHR
Sbjct: 181 YWRLPAESTLRDVVEVIRADEAHHR 205


>gi|297797435|ref|XP_002866602.1| hypothetical protein ARALYDRAFT_496620 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312437|gb|EFH42861.1| hypothetical protein ARALYDRAFT_496620 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 355

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 176/300 (58%), Positives = 213/300 (71%), Gaps = 21/300 (7%)

Query: 57  GEKEQQREENVQTTGAAAAGGSGNKDEKRIV-------------SYWGVEAPK--VNKDD 101
           G K  Q +  ++    ++A  + NKDE   V             SYWG+E  K  + + D
Sbjct: 57  GSKHVQGDFKLRWRRMSSASATENKDENSTVKKDQNGGGSVAVPSYWGIETAKMKITRKD 116

Query: 102 GSEWKWNCFRPWEAYEADLSIDLKKHHAPTT---FSDKMALWTVKSLRWP-TDLFFQRRY 157
           GS+W WNCF PWE Y+A+LSIDLKKHH P       D  A        +P   L  Q+  
Sbjct: 117 GSDWPWNCFMPWETYQANLSIDLKKHHVPNRQNRLPDSQAPPYSHRYIFPGMTLALQKTI 176

Query: 158 GCRAM-MLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAK 216
             ++  MLETVAAVPGMVGGMLLH KS+R+FEHSG WIKALLEEAENERMHLMT ME+ K
Sbjct: 177 WMQSNDMLETVAAVPGMVGGMLLHLKSIRKFEHSGSWIKALLEEAENERMHLMTMMELVK 236

Query: 217 PKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIEN 276
           PKWYER LV  VQG+F N++ + Y++SP+ AHR+VGYLEEEAIHSYTEFLK++D G IEN
Sbjct: 237 PKWYERLLVMLVQGIF-NSFLVCYVMSPRLAHRVVGYLEEEAIHSYTEFLKDIDDGKIEN 295

Query: 277 VPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           V APAIA DYWRLP ++TLKDVV V+RADEAHHRDVNH+ASDI  QG++LRE+ AP+GYH
Sbjct: 296 VAAPAIAIDYWRLPKDATLKDVVTVIRADEAHHRDVNHFASDIRNQGKELREAGAPIGYH 355


>gi|208436662|gb|ACI28877.1| mitochondrial alternative oxidase 1b [Vitis vinifera]
          Length = 201

 Score =  343 bits (880), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 156/201 (77%), Positives = 178/201 (88%)

Query: 105 WKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMML 164
           WKW+CFRPWE Y+AD+SID++KHH P  F DK A WTV++L+ PT +FFQR++ C AM+L
Sbjct: 1   WKWHCFRPWETYKADISIDVEKHHKPVKFMDKFAYWTVQALKVPTHMFFQRKHMCHAMLL 60

Query: 165 ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERAL 224
           ETVAAVPGMVGGMLLHC+SLRRFE SGGWIKALLEEAENERMHLMTF+E+AKP+WYERAL
Sbjct: 61  ETVAAVPGMVGGMLLHCQSLRRFEQSGGWIKALLEEAENERMHLMTFIELAKPQWYERAL 120

Query: 225 VFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAT 284
           VFAVQGVFFNAYFL YL SPK AHR+ GYLEEEA+ SYTEFLK+LD G+ ENVPAPAIA 
Sbjct: 121 VFAVQGVFFNAYFLTYLASPKVAHRITGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAI 180

Query: 285 DYWRLPPNSTLKDVVLVVRAD 305
           DYWRLP  STL+DVV V+RAD
Sbjct: 181 DYWRLPAESTLRDVVEVIRAD 201


>gi|208436648|gb|ACI28870.1| mitochondrial alternative oxidase 1b, partial [Vitis vinifera]
          Length = 199

 Score =  334 bits (857), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 153/199 (76%), Positives = 175/199 (87%)

Query: 112 PWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVP 171
           PWE Y+AD+SID++KHH P  F DK A WTV++L+ PT +FFQR++ C AM+LETVAAVP
Sbjct: 1   PWETYKADISIDVEKHHKPVKFMDKFAYWTVQALKIPTHMFFQRKHMCHAMLLETVAAVP 60

Query: 172 GMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGV 231
           GMVGGMLLHC+S RRFE SGGWIKALLEEAENERMHLMTF+E+AKP+WYERA+VFAVQGV
Sbjct: 61  GMVGGMLLHCQSPRRFEQSGGWIKALLEEAENERMHLMTFIELAKPQWYERAIVFAVQGV 120

Query: 232 FFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPP 291
           FFNAYFL YL SPK AHR+ GYLEEEA+ SYTEFLK+LD G+ ENVPAPAIA DYWRLP 
Sbjct: 121 FFNAYFLTYLASPKVAHRITGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAIDYWRLPA 180

Query: 292 NSTLKDVVLVVRADEAHHR 310
            STL+DVV V+RADEAHHR
Sbjct: 181 ESTLRDVVEVIRADEAHHR 199


>gi|225639906|gb|ABZ81228.2| mitochondrial alternative oxidase 1b [Daucus carota]
          Length = 170

 Score =  332 bits (852), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 153/170 (90%), Positives = 164/170 (96%)

Query: 167 VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 226
           VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEV++P+WYERALVF
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVSQPRWYERALVF 60

Query: 227 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDY 286
            VQGVFFNAYFL YL+SPK AHR+VGYLEEEAIHSYTEFLKELDKG IENVPAPAIA DY
Sbjct: 61  TVQGVFFNAYFLTYLVSPKLAHRVVGYLEEEAIHSYTEFLKELDKGTIENVPAPAIAIDY 120

Query: 287 WRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           WR+PPNSTL+DVV+VVRADEAHHRDVNH+ASDIHYQG +L+ESPAPLGYH
Sbjct: 121 WRMPPNSTLRDVVMVVRADEAHHRDVNHFASDIHYQGHELKESPAPLGYH 170


>gi|297599105|ref|NP_001046676.2| Os02g0318100 [Oryza sativa Japonica Group]
 gi|255670840|dbj|BAF08590.2| Os02g0318100 [Oryza sativa Japonica Group]
          Length = 192

 Score =  327 bits (837), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 149/183 (81%), Positives = 167/183 (91%)

Query: 154 QRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFME 213
           QRRYGCRAMMLETVAAVPGMV G +LH +SLRRFEHSGGWI+ALLEEAENERMHLMTFME
Sbjct: 10  QRRYGCRAMMLETVAAVPGMVAGAVLHLRSLRRFEHSGGWIRALLEEAENERMHLMTFME 69

Query: 214 VAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN 273
           V++P+WYERALV AVQG FFNAY   YL+SP+FAHR+VGYLEEEA+HSYTEFL++LD G 
Sbjct: 70  VSQPRWYERALVVAVQGAFFNAYLASYLLSPRFAHRIVGYLEEEAVHSYTEFLRDLDAGK 129

Query: 274 IENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPL 333
           I++VPAPAIA DYWRLP ++TL+DVV+VVRADEAHHRDVNHYASDIHYQG  LRE  APL
Sbjct: 130 IDDVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHYASDIHYQGHALREVAAPL 189

Query: 334 GYH 336
           GYH
Sbjct: 190 GYH 192


>gi|294463331|gb|ADE77201.1| unknown [Picea sitchensis]
          Length = 175

 Score =  326 bits (836), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 151/175 (86%), Positives = 163/175 (93%)

Query: 162 MMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYE 221
           MMLETVAAVPGMVGGMLLHCKSLR+F+HS GWIKALLEEAENERMHLMTFMEVA+PKWYE
Sbjct: 1   MMLETVAAVPGMVGGMLLHCKSLRKFQHSAGWIKALLEEAENERMHLMTFMEVAQPKWYE 60

Query: 222 RALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPA 281
           +ALVF VQGVFFNAYFL Y+ SPK AHR+VGYLEEEAIHSYTEF+KELDKG I NVPAPA
Sbjct: 61  KALVFTVQGVFFNAYFLMYIFSPKLAHRIVGYLEEEAIHSYTEFIKELDKGTIPNVPAPA 120

Query: 282 IATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           IA DYWRLP +STL+DVVLVVRADEAHHRDVNH+ASDIHYQG+ L E+ APLGYH
Sbjct: 121 IAIDYWRLPKDSTLRDVVLVVRADEAHHRDVNHFASDIHYQGKDLNEAAAPLGYH 175


>gi|302797945|ref|XP_002980733.1| hypothetical protein SELMODRAFT_112767 [Selaginella moellendorffii]
 gi|300151739|gb|EFJ18384.1| hypothetical protein SELMODRAFT_112767 [Selaginella moellendorffii]
          Length = 264

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 143/229 (62%), Positives = 182/229 (79%), Gaps = 2/229 (0%)

Query: 107 WNCFRPWE--AYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMML 164
           W  F+P E    EA+ SID+ KH  P  FSD+ A   V +LR+PTDL F++RY CRA ML
Sbjct: 5   WRAFQPSENRIIEAEGSIDVNKHRNPENFSDQFARLAVMALRFPTDLLFRQRYICRAAML 64

Query: 165 ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERAL 224
           ET++ VPGMVGGM+LHCKSLRR EHSGGWIKAL+EEAENERMHLMTFME++KP W ERAL
Sbjct: 65  ETISGVPGMVGGMVLHCKSLRRVEHSGGWIKALMEEAENERMHLMTFMELSKPSWQERAL 124

Query: 225 VFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAT 284
           VF  QG+F NAYFL Y++SP+FAHRM GY+ EE I SYT+ + ++D G + N PAP +A 
Sbjct: 125 VFTAQGMFMNAYFLLYVVSPRFAHRMAGYIREETIQSYTQLINDIDDGKVPNAPAPDLAI 184

Query: 285 DYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPL 333
           DYWRLP ++TL+DVV+V+RADE HHR++NH+A+D++ QG  L+E+PA +
Sbjct: 185 DYWRLPMDATLRDVVMVIRADEIHHREINHFAADVYMQGHTLKEAPADM 233


>gi|302790461|ref|XP_002976998.1| hypothetical protein SELMODRAFT_175925 [Selaginella moellendorffii]
 gi|300155476|gb|EFJ22108.1| hypothetical protein SELMODRAFT_175925 [Selaginella moellendorffii]
          Length = 264

 Score =  322 bits (825), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 142/229 (62%), Positives = 180/229 (78%), Gaps = 2/229 (0%)

Query: 107 WNCFRPWE--AYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMML 164
           W  F+P E    EA+ SID+ KH  P  FSD+ A   V +LR PTDL F++RY CRA ML
Sbjct: 5   WRAFQPSENRIIEAEASIDVNKHRNPENFSDQFARLAVMALRSPTDLLFRQRYICRAAML 64

Query: 165 ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERAL 224
           ET++ VPGMVGGM+LHCKSLRR EHSGGWIKAL+EEAENERMHLMTFME++KP W ERAL
Sbjct: 65  ETISGVPGMVGGMVLHCKSLRRVEHSGGWIKALMEEAENERMHLMTFMELSKPSWQERAL 124

Query: 225 VFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAT 284
           VF  QG+F NAYFL Y++SP+FAHRM GY+ EE I SYT+ + ++D G + N  AP +A 
Sbjct: 125 VFTAQGMFMNAYFLLYVVSPRFAHRMAGYIREETIQSYTQLINDIDDGKVPNASAPDLAI 184

Query: 285 DYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPL 333
           DYWRLP ++TL+DVV+V+RADE HHR++NH+A+D++ QG  L+E+PA +
Sbjct: 185 DYWRLPIDATLRDVVMVIRADEIHHREINHFAADVYMQGHTLKEAPADM 233


>gi|125583366|gb|EAZ24297.1| hypothetical protein OsJ_08049 [Oryza sativa Japonica Group]
          Length = 175

 Score =  316 bits (809), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 146/175 (83%), Positives = 162/175 (92%)

Query: 162 MMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYE 221
           MMLETVAAVPGMVGGMLLH +SLRRFEHSGGWI+ALLEEAENERMHLMTFMEVAKP+WYE
Sbjct: 1   MMLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRALLEEAENERMHLMTFMEVAKPRWYE 60

Query: 222 RALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPA 281
           RALV AVQGVFFNAYFLGYL+SPK AHR+VGYLEEEAIHSYTE+LK+++ G IENVPAP 
Sbjct: 61  RALVLAVQGVFFNAYFLGYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIEAGKIENVPAPP 120

Query: 282 IATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           IA DYWRLP  +TLKDVV+VVRADEAHHRDVNH+ASD+H+QG  L++ PAPL YH
Sbjct: 121 IAIDYWRLPAGATLKDVVVVVRADEAHHRDVNHFASDVHFQGMDLKDIPAPLDYH 175


>gi|125583367|gb|EAZ24298.1| hypothetical protein OsJ_08050 [Oryza sativa Japonica Group]
          Length = 325

 Score =  298 bits (763), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 149/225 (66%), Positives = 168/225 (74%), Gaps = 16/225 (7%)

Query: 112 PWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVP 171
           PWE Y  D +IDLKKHH P    DK+A WTVK+LR PTD+FF                VP
Sbjct: 117 PWETYSPDTTIDLKKHHEPKVLLDKVAYWTVKALRVPTDIFFPEE-----------VRVP 165

Query: 172 GMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGV 231
               G              GGWI+ALLEEAENERMHLMTFMEVAKP+WYERALV AVQGV
Sbjct: 166 RDDAGDGGRGCRG-----CGGWIRALLEEAENERMHLMTFMEVAKPRWYERALVLAVQGV 220

Query: 232 FFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPP 291
           FFNAYFLGYL+SPK AHR+VGYLEEEAIHSYTE+LK+++ G IENVPAP IA DYWRLP 
Sbjct: 221 FFNAYFLGYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIEAGKIENVPAPPIAIDYWRLPA 280

Query: 292 NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
            +TLKDVV+VVRADEAHHRDVNH+ASD+H+QG  L++ PAPL YH
Sbjct: 281 GATLKDVVVVVRADEAHHRDVNHFASDVHFQGMDLKDIPAPLDYH 325


>gi|433335543|gb|AGB34165.1| mitochondrial alternative oxidase 2, partial [Olea europaea subsp.
           europaea]
          Length = 169

 Score =  298 bits (762), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 133/169 (78%), Positives = 155/169 (91%)

Query: 168 AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 227
           AAVPGMVGGMLLH +SLR+FE SGGWIKALLEEAENERMHLMT +E+ +PKWYER LV  
Sbjct: 1   AAVPGMVGGMLLHLRSLRKFEQSGGWIKALLEEAENERMHLMTMVELVQPKWYERVLVLT 60

Query: 228 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYW 287
           VQGVFFNA+F+ YL+SPK AHR+VGYLEEEAIHSYTE+LK++D G IENVPAPAIA DYW
Sbjct: 61  VQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGKIENVPAPAIAIDYW 120

Query: 288 RLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
           RLP ++TLKDV+ V+RADEAHHRDVNH+ASDIH+QG++LRE+PAP+GYH
Sbjct: 121 RLPKDATLKDVITVIRADEAHHRDVNHFASDIHFQGKELREAPAPVGYH 169


>gi|449016571|dbj|BAM79973.1| mitochondrial alternative oxidase [Cyanidioschyzon merolae strain
           10D]
          Length = 383

 Score =  297 bits (761), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 148/254 (58%), Positives = 179/254 (70%), Gaps = 6/254 (2%)

Query: 79  GNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMA 138
           G  DE     Y  V       D    WKW+ F P   Y+ +L++DLK+H  PT FSD+ A
Sbjct: 120 GRPDE---TPYQPVRDAPPKSDPNYPWKWHSFLPEHTYKPNLNVDLKRHVQPTGFSDRFA 176

Query: 139 LWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALL 198
            +TVK LR+  D FFQRRYG RA++LETVAAVPGMVGGM+LH + LRRF  SGGWI+ LL
Sbjct: 177 YYTVKFLRFFADAFFQRRYGHRAVVLETVAAVPGMVGGMMLHLQCLRRFRQSGGWIRVLL 236

Query: 199 EEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEA 258
           EEAENERMHLM +M +A+P+  ERALV   Q  FF+ Y L Y ISPK AHR+VGYLEEEA
Sbjct: 237 EEAENERMHLMVYMSIAQPRALERALVILAQAGFFSFYTLLYTISPKTAHRLVGYLEEEA 296

Query: 259 IHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASD 318
           I SYTE+LK++D G I N+PAP IA DYW+L PN+ L+DVVL  RADEAHHRDVNH  ++
Sbjct: 297 IVSYTEYLKDIDDGRIPNIPAPPIAIDYWQLDPNARLRDVVLATRADEAHHRDVNHLRAN 356

Query: 319 IHYQGRQLRESPAP 332
           +    +  R  PAP
Sbjct: 357 LI---KAHRGDPAP 367


>gi|33087083|gb|AAP92755.1| alternative oxidase 2 [Solanum lycopersicum]
          Length = 173

 Score =  295 bits (755), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 134/173 (77%), Positives = 156/173 (90%)

Query: 164 LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERA 223
           LETVA VPGMVGGMLLH +SLR+FEHSGGWIKALLEEAENERMHLMT +E+ +PKWYER 
Sbjct: 1   LETVAGVPGMVGGMLLHLRSLRKFEHSGGWIKALLEEAENERMHLMTMVELVQPKWYERL 60

Query: 224 LVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA 283
           LV AVQGVFFN Y + YL+SPK AHR+VGYLEEEAIHSYT +L ++D+G IENVPAPAIA
Sbjct: 61  LVIAVQGVFFNFYSVLYLLSPKLAHRVVGYLEEEAIHSYTLYLNDIDRGEIENVPAPAIA 120

Query: 284 TDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
            DYWRLP ++TLKDV+ V+RADEAHHRDVNH+ASDIHYQG++L+E+ AP+GYH
Sbjct: 121 IDYWRLPKDATLKDVITVIRADEAHHRDVNHFASDIHYQGKKLQEAAAPIGYH 173


>gi|452823408|gb|EME30419.1| mitochondrial alternative oxidase [Galdieria sulphuraria]
          Length = 364

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 144/257 (56%), Positives = 181/257 (70%), Gaps = 2/257 (0%)

Query: 78  SGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKM 137
            G++ E+ I  Y  V      +D    WKW  F P   Y+ +LSIDL++HH P  F D++
Sbjct: 90  QGSQVEEPITPYQPVVENLDKRDPKYPWKWRSFLPEHTYKPNLSIDLQRHHTPLDFRDRV 149

Query: 138 ALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKAL 197
           AL  VK LR+  D FFQ+RYG RA++LETVAAVPGMVGGML H + LRRF  SGGWI+ L
Sbjct: 150 ALGIVKFLRFFADAFFQKRYGHRAVVLETVAAVPGMVGGMLTHFRCLRRFAPSGGWIRVL 209

Query: 198 LEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEE 257
           L+EAENERMHL+TFM +AKP ++ER LV   QG FF  Y + Y++SPK AHR+VGYLEEE
Sbjct: 210 LDEAENERMHLVTFMSIAKPNYFERLLVLITQGGFFAFYTMIYILSPKTAHRIVGYLEEE 269

Query: 258 AIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYAS 317
           AI SYTE+LK +D G   N+PAP IA DYW+L  ++ L+DVVL VRADEA+HRDVNH  +
Sbjct: 270 AIISYTEYLKGIDSGLHANIPAPQIAIDYWQLDSDARLRDVVLAVRADEANHRDVNHLKA 329

Query: 318 DIHYQGRQLRESPAPLG 334
           ++ Y      + PAPL 
Sbjct: 330 NLLYTKHG--DEPAPLS 344


>gi|170674871|gb|ACB30186.1| mitochondrial alternative oxidase 1b [Hypericum perforatum]
          Length = 147

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 138/147 (93%), Positives = 140/147 (95%)

Query: 167 VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 226
           VAAVPGMVGGMLLHCKSLRRFEHSGGWIK LL+EAENERMHLMTFMEVAKPKWYERALVF
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGWIKTLLDEAENERMHLMTFMEVAKPKWYERALVF 60

Query: 227 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDY 286
            VQG FFN YFLGYLISPKFAHR+VGYLEEEAIHSYTEFLKELD GNIENVPAPAIA DY
Sbjct: 61  TVQGAFFNIYFLGYLISPKFAHRVVGYLEEEAIHSYTEFLKELDNGNIENVPAPAIAVDY 120

Query: 287 WRLPPNSTLKDVVLVVRADEAHHRDVN 313
           WRLPPNSTLKDVV VVRADEAHHRDVN
Sbjct: 121 WRLPPNSTLKDVVQVVRADEAHHRDVN 147


>gi|452821862|gb|EME28887.1| mitochondrial alternative oxidase [Galdieria sulphuraria]
          Length = 355

 Score =  289 bits (739), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 142/239 (59%), Positives = 173/239 (72%), Gaps = 5/239 (2%)

Query: 98  NKDDGSE---WKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQ 154
           N D  +E   WKW  F P   Y+ +L +DL +HH P  F DK+A   VK LR   D FF+
Sbjct: 98  NLDKSTEDYPWKWRSFLPEHTYKPNLKVDLTRHHDPIDFRDKVAQKVVKFLRVFADAFFR 157

Query: 155 RRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEV 214
           +RYG RA++LETVAAVPGMVGGML H +SLRRF+ SGGWI+ LLEEAENERMHLMTFM +
Sbjct: 158 KRYGHRAVVLETVAAVPGMVGGMLQHLQSLRRFKPSGGWIRVLLEEAENERMHLMTFMAI 217

Query: 215 AKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI 274
           AKP   ERALV   QG FF  Y   Y++SPK AHR+VGYLEEEAI SYT++L+E+DKG  
Sbjct: 218 AKPTILERALVLLTQGGFFAFYAFIYILSPKTAHRIVGYLEEEAIISYTQYLQEIDKGTH 277

Query: 275 ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPL 333
            N+PAP IA DYW++   + L+DVVL VRADEAHHRDVNH  +++ Y+ R     PAP+
Sbjct: 278 ANIPAPEIAIDYWQMDKGARLRDVVLAVRADEAHHRDVNHLKANLLYKKRY--SEPAPV 334


>gi|190710537|gb|ACE95099.1| mitochondrial alternative oxidase precursor [Citrus sinensis]
          Length = 148

 Score =  286 bits (733), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 137/143 (95%), Positives = 138/143 (96%)

Query: 167 VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 226
           VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 60

Query: 227 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDY 286
           A QGVFFNAYFLGYLISPKFAHRMVGYLEE  IHSYTEFLKELDKGNIENVPAPAIATDY
Sbjct: 61  AXQGVFFNAYFLGYLISPKFAHRMVGYLEEXXIHSYTEFLKELDKGNIENVPAPAIATDY 120

Query: 287 WRLPPNSTLKDVVLVVRADEAHH 309
           WRLPPNSTLKDVVLVV  +EAHH
Sbjct: 121 WRLPPNSTLKDVVLVVXTNEAHH 143


>gi|170674869|gb|ACB30185.1| mitochondrial alternative oxidase 1a [Hypericum perforatum]
          Length = 147

 Score =  284 bits (727), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 132/147 (89%), Positives = 140/147 (95%)

Query: 167 VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 226
           VAAVPGMVGGMLLHCKSLRRF HS GWIKALLEEAENERMHLMTFMEV++P+WYERALVF
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFGHSAGWIKALLEEAENERMHLMTFMEVSQPRWYERALVF 60

Query: 227 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDY 286
            VQGVFFNAYFL YL+SPK AHR+VGYLEEEAIHSYTEFLKELDKG IENVPAPAIA DY
Sbjct: 61  TVQGVFFNAYFLTYLVSPKLAHRVVGYLEEEAIHSYTEFLKELDKGTIENVPAPAIAIDY 120

Query: 287 WRLPPNSTLKDVVLVVRADEAHHRDVN 313
           WR+PPNSTL+DVV+VVRADEAHHRDVN
Sbjct: 121 WRMPPNSTLRDVVMVVRADEAHHRDVN 147


>gi|357490779|ref|XP_003615677.1| Alternative oxidase [Medicago truncatula]
 gi|355517012|gb|AES98635.1| Alternative oxidase [Medicago truncatula]
          Length = 231

 Score =  284 bits (726), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 133/181 (73%), Positives = 160/181 (88%)

Query: 156 RYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVA 215
           RYGC AMMLET+AAVPGMVGGMLLH KSLR+F+H+GGWIKALLEEAENERMHLMT +E+ 
Sbjct: 51  RYGCHAMMLETIAAVPGMVGGMLLHLKSLRKFQHAGGWIKALLEEAENERMHLMTMVELV 110

Query: 216 KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE 275
           KP W+ER LV   QGVFFN +F+ Y++SPK AHR VGYLEEEA+ SYT++L  ++ G +E
Sbjct: 111 KPSWHERLLVITAQGVFFNGFFVFYILSPKIAHRFVGYLEEEAVISYTQYLNAIESGKVE 170

Query: 276 NVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGY 335
           NVPAPAIA DYWRLP ++TLKDVV V+RADEAHHRDVNH+ASDIH+QG++L+E+PAP+GY
Sbjct: 171 NVPAPAIAIDYWRLPNDATLKDVVTVIRADEAHHRDVNHFASDIHHQGKELKEAPAPVGY 230

Query: 336 H 336
           H
Sbjct: 231 H 231


>gi|257481048|gb|ACV60633.1| mitochondrial alternative oxidase 1a [Pinus pinea]
 gi|257481052|gb|ACV60635.1| mitochondrial alternative oxidase 1a [Pinus pinea]
 gi|257481056|gb|ACV60637.1| mitochondrial alternative oxidase 1a [Pinus pinea]
 gi|257481058|gb|ACV60638.1| mitochondrial alternative oxidase 1a [Pinus pinea]
          Length = 147

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 130/147 (88%), Positives = 139/147 (94%)

Query: 167 VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 226
           VAAVPGMVGGMLLHCKSLRRFEHSGGWIK LL+EAENERMHLMTFMEV++P+WYERALVF
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGWIKTLLDEAENERMHLMTFMEVSQPRWYERALVF 60

Query: 227 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDY 286
            VQGVFFNAYFL YL SPK AHR+VGYLEEEAI+SYTEFLKELDKG IENVPAPAIA DY
Sbjct: 61  TVQGVFFNAYFLAYLASPKLAHRVVGYLEEEAIYSYTEFLKELDKGTIENVPAPAIAIDY 120

Query: 287 WRLPPNSTLKDVVLVVRADEAHHRDVN 313
           WRLP +STL+DVV+VVRADEAHHRDVN
Sbjct: 121 WRLPADSTLRDVVMVVRADEAHHRDVN 147


>gi|257481046|gb|ACV60632.1| mitochondrial alternative oxidase 1a [Pinus pinea]
          Length = 147

 Score =  278 bits (711), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 129/147 (87%), Positives = 139/147 (94%)

Query: 167 VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 226
           VAAVPGMVGGMLLHCKSLRRFEHSGGWI+ LL+EAENERMHLMTFMEV++P+WYERALVF
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGWIRTLLDEAENERMHLMTFMEVSQPRWYERALVF 60

Query: 227 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDY 286
            VQGVFFNAYFL YL SPK AHR+VGYLEEEAI+SYTEFLKELDKG IENVPAPAIA DY
Sbjct: 61  TVQGVFFNAYFLAYLASPKLAHRVVGYLEEEAIYSYTEFLKELDKGTIENVPAPAIAIDY 120

Query: 287 WRLPPNSTLKDVVLVVRADEAHHRDVN 313
           WRLP +STL+DVV+VVRADEAHHRDVN
Sbjct: 121 WRLPADSTLRDVVMVVRADEAHHRDVN 147


>gi|257481044|gb|ACV60631.1| mitochondrial alternative oxidase 1a [Pinus pinea]
          Length = 147

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 129/147 (87%), Positives = 138/147 (93%)

Query: 167 VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 226
           VAAVPGMVGGMLLHCKSLRRFEHSGGWIK LL+EAENERMHLMTFMEV++P+WYERALVF
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGWIKTLLDEAENERMHLMTFMEVSQPRWYERALVF 60

Query: 227 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDY 286
            VQGVFFNAYFL YL SPK AHR+VGYLEEEAI+SYTEFLKELDKG IENVPAPAIA DY
Sbjct: 61  TVQGVFFNAYFLAYLASPKLAHRVVGYLEEEAIYSYTEFLKELDKGTIENVPAPAIAIDY 120

Query: 287 WRLPPNSTLKDVVLVVRADEAHHRDVN 313
           WRLP +STL+DVV+VVRA EAHHRDVN
Sbjct: 121 WRLPADSTLRDVVMVVRAGEAHHRDVN 147


>gi|408797922|gb|AFU92145.1| mitochondrial alternative oxidase 1, partial [Araucaria
           angustifolia]
          Length = 147

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 126/147 (85%), Positives = 139/147 (94%)

Query: 167 VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 226
           VAAVPGMVGGMLLHCKSLR+F+HSGGWIKALLEEAENERMHLMTFMEVAKP+WYERALVF
Sbjct: 1   VAAVPGMVGGMLLHCKSLRKFQHSGGWIKALLEEAENERMHLMTFMEVAKPRWYERALVF 60

Query: 227 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDY 286
            VQGVFFNAYF+ Y+ISPK AHR+VGYLEEEA HSYTEFLKELD GNI NVPAPAIA DY
Sbjct: 61  TVQGVFFNAYFILYMISPKLAHRIVGYLEEEATHSYTEFLKELDDGNIPNVPAPAIAIDY 120

Query: 287 WRLPPNSTLKDVVLVVRADEAHHRDVN 313
           W+LP +STL+DVV++++ADEAHHRDVN
Sbjct: 121 WKLPKDSTLRDVVMIIKADEAHHRDVN 147


>gi|257481054|gb|ACV60636.1| mitochondrial alternative oxidase 1a [Pinus pinea]
          Length = 147

 Score =  275 bits (703), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 128/147 (87%), Positives = 137/147 (93%)

Query: 167 VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 226
           VAAVPGMVGGMLLHCKSLRRFEHSGGWIK LL+EAENERMHLMTFMEV++P+WYERALVF
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGWIKTLLDEAENERMHLMTFMEVSQPRWYERALVF 60

Query: 227 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDY 286
            VQGVFFNAYFL YL SPK AHR+VGYLEEEAI+SYTEFLKELDKG IENVPA AIA DY
Sbjct: 61  TVQGVFFNAYFLAYLASPKLAHRVVGYLEEEAIYSYTEFLKELDKGTIENVPASAIAIDY 120

Query: 287 WRLPPNSTLKDVVLVVRADEAHHRDVN 313
           WRLP +STL+DVV+V RADEAHHRDVN
Sbjct: 121 WRLPADSTLRDVVMVARADEAHHRDVN 147


>gi|257481050|gb|ACV60634.1| mitochondrial alternative oxidase 1a [Pinus pinea]
          Length = 147

 Score =  275 bits (702), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 128/147 (87%), Positives = 138/147 (93%)

Query: 167 VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 226
           VAAVPGMVGGMLLHCKSLRRFEHSGGWIK LL+EAENERMHLMTFMEV++P+WYERALVF
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGWIKTLLDEAENERMHLMTFMEVSQPRWYERALVF 60

Query: 227 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDY 286
            VQGVFF+AYFL YL SPK AHR+VGYLEEEAI+SYTEFLKELDKG IENVPAPA A DY
Sbjct: 61  TVQGVFFSAYFLAYLASPKLAHRVVGYLEEEAIYSYTEFLKELDKGTIENVPAPANAIDY 120

Query: 287 WRLPPNSTLKDVVLVVRADEAHHRDVN 313
           WRLP +STL+DVV+VVRADEAHHRDVN
Sbjct: 121 WRLPADSTLRDVVMVVRADEAHHRDVN 147


>gi|208436650|gb|ACI28871.1| mitochondrial alternative oxidase 1a, partial [Vitis vinifera]
 gi|208436658|gb|ACI28875.1| mitochondrial alternative oxidase 1a, partial [Vitis vinifera]
          Length = 147

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 127/147 (86%), Positives = 137/147 (93%)

Query: 167 VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 226
           VAAVPGMVGGMLLHCKSLRRFEHSGGWI+ LLEEAENERMHLMTFMEVAKP+WYERALVF
Sbjct: 1   VAAVPGMVGGMLLHCKSLRRFEHSGGWIRVLLEEAENERMHLMTFMEVAKPRWYERALVF 60

Query: 227 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDY 286
           AVQG+F+N YF+ Y+ISPK AHR VGYLEEEAIHSY EF+KELD GNI NVPAPAIA DY
Sbjct: 61  AVQGIFWNFYFVAYVISPKVAHRAVGYLEEEAIHSYNEFIKELDSGNIPNVPAPAIAIDY 120

Query: 287 WRLPPNSTLKDVVLVVRADEAHHRDVN 313
           WRL P+STL+DVV+VVRADEAHHRDVN
Sbjct: 121 WRLAPDSTLRDVVMVVRADEAHHRDVN 147


>gi|2811176|gb|AAB97839.1| alternative oxidase, partial [Zea mays]
          Length = 149

 Score =  272 bits (696), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 129/149 (86%), Positives = 138/149 (92%)

Query: 161 AMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWY 220
           AMMLETVAAVPGMVGGMLLH +SLRRFE SGGWI+ALLEEAENERMHLMTFMEVAKP+WY
Sbjct: 1   AMMLETVAAVPGMVGGMLLHLRSLRRFEQSGGWIRALLEEAENERMHLMTFMEVAKPRWY 60

Query: 221 ERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAP 280
           ERALV  VQGVFFNAYFLGYL+SPKFAHR+VGYLEEEAIHSYTE+LK+L+ G IE  PAP
Sbjct: 61  ERALVITVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEYLKDLEAGKIEKRPAP 120

Query: 281 AIATDYWRLPPNSTLKDVVLVVRADEAHH 309
           AIA DYWRLP N+TLKDVV VVRADEAHH
Sbjct: 121 AIAIDYWRLPANATLKDVVTVVRADEAHH 149


>gi|14599476|gb|AAK70936.1| alternative oxidase 1b [Mangifera indica]
          Length = 144

 Score =  271 bits (694), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 128/144 (88%), Positives = 134/144 (93%)

Query: 164 LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERA 223
           LETVAAVPG VGGMLLHCKSLR+FEHSGGWIK L EEAENERMHLMTFMEVAKP+WYERA
Sbjct: 1   LETVAAVPGTVGGMLLHCKSLRKFEHSGGWIKVLTEEAENERMHLMTFMEVAKPRWYERA 60

Query: 224 LVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA 283
           L+ AVQGVFFN Y LGYLISPKFAHR+VGYLEEEAI SYTEFLKELDKGNIENVPAPAIA
Sbjct: 61  LILAVQGVFFNVYMLGYLISPKFAHRVVGYLEEEAILSYTEFLKELDKGNIENVPAPAIA 120

Query: 284 TDYWRLPPNSTLKDVVLVVRADEA 307
            DYWRLPP STL+DVV+VVRADE 
Sbjct: 121 IDYWRLPPESTLRDVVIVVRADEC 144


>gi|208436646|gb|ACI28869.1| mitochondrial alternative oxidase 1a, partial [Vitis vinifera]
          Length = 143

 Score =  266 bits (680), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 123/143 (86%), Positives = 133/143 (93%)

Query: 171 PGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQG 230
           PGMVGGMLLHCKSLRRFEHSGGWI+ LLEEAENERMHLMTFMEVAKP+WYERALVFAVQG
Sbjct: 1   PGMVGGMLLHCKSLRRFEHSGGWIRVLLEEAENERMHLMTFMEVAKPRWYERALVFAVQG 60

Query: 231 VFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLP 290
           +F+N YF+ Y+ISPK AHR VGYLEEEAIHSY EF+KELD GNI NVPAPAIA DYWRL 
Sbjct: 61  IFWNFYFVAYVISPKVAHRAVGYLEEEAIHSYNEFIKELDSGNIPNVPAPAIAIDYWRLA 120

Query: 291 PNSTLKDVVLVVRADEAHHRDVN 313
           P+STL+DVV+VVRADEAHHRDVN
Sbjct: 121 PDSTLRDVVMVVRADEAHHRDVN 143


>gi|257481062|gb|ACV60640.1| mitochondrial alternative oxidase 1b [Pinus pinea]
          Length = 144

 Score =  265 bits (676), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 127/144 (88%), Positives = 137/144 (95%)

Query: 168 AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 227
           AAVPGMVGGMLLHCKSLR+F+HSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 
Sbjct: 1   AAVPGMVGGMLLHCKSLRKFQHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFT 60

Query: 228 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYW 287
           VQG+FFNAYFL Y++SPK AHR+ GYLEEEAIHSYTEFLKELDKGNI NVPAPAIA DYW
Sbjct: 61  VQGIFFNAYFLMYILSPKLAHRVTGYLEEEAIHSYTEFLKELDKGNIPNVPAPAIAIDYW 120

Query: 288 RLPPNSTLKDVVLVVRADEAHHRD 311
           RLP +STL+DVV+VVRADEAHHR+
Sbjct: 121 RLPKDSTLRDVVVVVRADEAHHRE 144


>gi|297789037|ref|XP_002862531.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297308108|gb|EFH38789.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 334

 Score =  263 bits (671), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 145/307 (47%), Positives = 178/307 (57%), Gaps = 56/307 (18%)

Query: 57  GEKEQQREENVQTTGAAAAGGSGNKDEKRIV-------------SYWGVEAPK--VNKDD 101
           G K  Q +  ++    ++A  + NKDE   V             SYWG+E  K  + + D
Sbjct: 57  GSKHVQGDFKLRWRRMSSASATENKDENSTVKKDQNGGGSVAVPSYWGIETAKMKITRKD 116

Query: 102 GSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLF--FQRRYGC 159
           GS+W WNCF PWE Y+A+LSIDLKKHH P            +  R P      +  RY  
Sbjct: 117 GSDWPWNCFMPWETYQANLSIDLKKHHVPN-----------RQNRLPDSQAPPYSHRYIF 165

Query: 160 RAM----------MLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 209
             M          MLETVAAVPGMVGGMLLH KS+R+FEHSGGWIKALLEEAENERMHLM
Sbjct: 166 PGMTLTIWMQSNDMLETVAAVPGMVGGMLLHLKSIRKFEHSGGWIKALLEEAENERMHLM 225

Query: 210 TFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKEL 269
           T ME+ KPKWYER LV  VQG+FFN++ + Y++SP+ AHR+                   
Sbjct: 226 TMMELVKPKWYERLLVMLVQGIFFNSFLVCYVMSPRLAHRISTM---------------- 269

Query: 270 DKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRES 329
             G    +P P +             KDVV V+RADEAHHRDVNH+ASDI  QG++LRE+
Sbjct: 270 --GRSRMLPRPRLLLIIGDCLKMLRWKDVVTVIRADEAHHRDVNHFASDIRNQGKELREA 327

Query: 330 PAPLGYH 336
            AP+GYH
Sbjct: 328 GAPIGYH 334


>gi|208436642|gb|ACI28867.1| mitochondrial alternative oxidase 1a, partial [Vitis vinifera]
          Length = 143

 Score =  263 bits (671), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 122/142 (85%), Positives = 132/142 (92%)

Query: 168 AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 227
           AAVPGMVGGMLLHCKSLRRFEHSGGWI+ LLEEAENERMHLMTFMEVAKP+WYERALVFA
Sbjct: 1   AAVPGMVGGMLLHCKSLRRFEHSGGWIRVLLEEAENERMHLMTFMEVAKPRWYERALVFA 60

Query: 228 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYW 287
           VQG+F+N YF+ Y+ISPK AHR VGYLEEEAIHSY EF+KELD GNI NVPAPAIA DYW
Sbjct: 61  VQGIFWNFYFVAYVISPKVAHRAVGYLEEEAIHSYNEFIKELDSGNIPNVPAPAIAIDYW 120

Query: 288 RLPPNSTLKDVVLVVRADEAHH 309
           RL P+STL+DVV+VVRADEAHH
Sbjct: 121 RLAPDSTLRDVVMVVRADEAHH 142


>gi|190710539|gb|ACE95100.1| mitochondrial alternative oxidase precursor [Citrus sinensis]
          Length = 147

 Score =  261 bits (668), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 119/147 (80%), Positives = 135/147 (91%)

Query: 167 VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 226
           VAAVPGMVGGMLLH KSLR+F+HSGGWIKALLEEAENERMHLMT +E+ KPKWYER LV 
Sbjct: 1   VAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVL 60

Query: 227 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDY 286
            VQGVFFNA+F+ YL+SPK AHR+VGYLEEEAIHSYTE+LK++D G+IENVPAPAIA DY
Sbjct: 61  TVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENVPAPAIAIDY 120

Query: 287 WRLPPNSTLKDVVLVVRADEAHHRDVN 313
           WRLP ++TLKDV+ V+RADEAHHRDVN
Sbjct: 121 WRLPKDATLKDVITVIRADEAHHRDVN 147


>gi|37955176|gb|AAP76379.1| alternative oxidase [Capsicum annuum]
          Length = 135

 Score =  261 bits (667), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 123/135 (91%), Positives = 129/135 (95%)

Query: 173 MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVF 232
           MVGGMLLHCKSLRRFE SGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVF
Sbjct: 1   MVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVF 60

Query: 233 FNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPN 292
           FNAYF+ Y++SPK AHR+VGYLEEEAIHSYTEFLKELD GNIENVPAPAIA DYWRLP +
Sbjct: 61  FNAYFVTYILSPKLAHRIVGYLEEEAIHSYTEFLKELDNGNIENVPAPAIAIDYWRLPKD 120

Query: 293 STLKDVVLVVRADEA 307
           STL+DVVLVVRADEA
Sbjct: 121 STLRDVVLVVRADEA 135


>gi|336451471|ref|ZP_08621909.1| Alternative oxidase [Idiomarina sp. A28L]
 gi|336281842|gb|EGN75114.1| Alternative oxidase [Idiomarina sp. A28L]
          Length = 210

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 121/193 (62%), Positives = 149/193 (77%)

Query: 126 KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLR 185
           KHH P   SD++A  TV+ LR+  DLFF  RYG RA++LETVAAVPGMVGG + H  SLR
Sbjct: 10  KHHKPQGISDRIAYGTVRFLRFFADLFFSGRYGNRAVVLETVAAVPGMVGGAIQHLHSLR 69

Query: 186 RFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPK 245
           R ++  GWI  LLEEAENERMHL+TF+EVAKP W ER LV   QG+F+NA+F+ YL S K
Sbjct: 70  RMKNDDGWIHTLLEEAENERMHLLTFIEVAKPNWLERTLVIIAQGIFYNAFFVLYLFSSK 129

Query: 246 FAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRAD 305
            AHR+VGYLEEEA++SYTE+L  +D G  ENVPAP IA DYW+LP ++ L++V++ VRAD
Sbjct: 130 TAHRVVGYLEEEAVYSYTEYLAGVDSGKYENVPAPQIAIDYWQLPEDARLREVIIAVRAD 189

Query: 306 EAHHRDVNHYASD 318
           EA HRDVNH  +D
Sbjct: 190 EAKHRDVNHGFAD 202


>gi|433335539|gb|AGB34163.1| mitochondrial alternative oxidase 1b, partial [Olea europaea subsp.
           europaea]
          Length = 143

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 122/143 (85%), Positives = 130/143 (90%)

Query: 168 AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 227
           AAVPGMVGGMLLHCKSLRRFEHSGGWIK LL+EAENERMHLMTFMEV + +W ERALVF 
Sbjct: 1   AAVPGMVGGMLLHCKSLRRFEHSGGWIKTLLDEAENERMHLMTFMEVTQSRWNERALVFT 60

Query: 228 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYW 287
           VQGV FNAYFL YL SPK AHR+VGYLEEEAI+SYTEFLKELDKG IENVPAPAIA DYW
Sbjct: 61  VQGVCFNAYFLAYLASPKLAHRVVGYLEEEAIYSYTEFLKELDKGTIENVPAPAIAIDYW 120

Query: 288 RLPPNSTLKDVVLVVRADEAHHR 310
            LP +STL+DVV+VVRADEAHHR
Sbjct: 121 CLPADSTLRDVVMVVRADEAHHR 143


>gi|126572031|gb|ABO21612.1| mitochondrial alternative oxidase [Cucurbita pepo]
          Length = 147

 Score =  258 bits (659), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 118/147 (80%), Positives = 134/147 (91%)

Query: 166 TVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV 225
           TVAAVPGMVGGMLLH KSLRRF+HSGGWIKALLEEAENERMHLMT +E+ +PKWYER LV
Sbjct: 1   TVAAVPGMVGGMLLHLKSLRRFQHSGGWIKALLEEAENERMHLMTMIELVQPKWYERMLV 60

Query: 226 FAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATD 285
             VQGVFFNA+F+ YL+SPK AHR+VGYLEEEAIHSYTE+LK++D+G IENVPAPAIA D
Sbjct: 61  ITVQGVFFNAFFVLYLMSPKLAHRVVGYLEEEAIHSYTEYLKDIDEGKIENVPAPAIAID 120

Query: 286 YWRLPPNSTLKDVVLVVRADEAHHRDV 312
           YWRLP ++ LKDV+ V+RADEAHHRDV
Sbjct: 121 YWRLPKDARLKDVITVIRADEAHHRDV 147


>gi|257481060|gb|ACV60639.1| mitochondrial alternative oxidase 1b [Pinus pinea]
          Length = 144

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 122/144 (84%), Positives = 135/144 (93%)

Query: 168 AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 227
           AAVPGMVG +LLHCKSLR+F+HSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV  
Sbjct: 1   AAVPGMVGAILLHCKSLRKFQHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVST 60

Query: 228 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYW 287
           VQG+FFNAYFL Y++SPK AHR+ GYLEEEAI+SYTEFLKELDKGNI NVPAPAIA DYW
Sbjct: 61  VQGIFFNAYFLMYILSPKLAHRITGYLEEEAIYSYTEFLKELDKGNIPNVPAPAIAIDYW 120

Query: 288 RLPPNSTLKDVVLVVRADEAHHRD 311
           RLP ++TL+DVV+VVRADEAHHR+
Sbjct: 121 RLPKDATLRDVVVVVRADEAHHRE 144


>gi|257481064|gb|ACV60641.1| mitochondrial alternative oxidase 2 [Pinus pinea]
          Length = 147

 Score =  254 bits (649), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 114/147 (77%), Positives = 136/147 (92%)

Query: 167 VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 226
           VAAVPGMVGGMLLH KSLR+F+HSGGWIKALLEEAENERMHLMT +E+ +PKW+ER LV 
Sbjct: 1   VAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVQPKWHERLLVL 60

Query: 227 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDY 286
           AVQGVFFNA+F+ Y++SPK AHR+VGYLEEEAIHS+TE+LK++D+G IENVPAPAI+ DY
Sbjct: 61  AVQGVFFNAFFVLYILSPKLAHRIVGYLEEEAIHSHTEYLKDIDRGLIENVPAPAISIDY 120

Query: 287 WRLPPNSTLKDVVLVVRADEAHHRDVN 313
           WRLP ++ L+DV+LV+RADEAHHRDVN
Sbjct: 121 WRLPQDAKLRDVILVIRADEAHHRDVN 147


>gi|208436654|gb|ACI28873.1| mitochondrial alternative oxidase 1b, partial [Vitis vinifera]
          Length = 142

 Score =  254 bits (648), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 118/142 (83%), Positives = 129/142 (90%)

Query: 169 AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
           AVPGMVGGMLLHC+S RRFE SGGWIKALLEEAENERMHLMTF+E+AKP+WYERA+VFAV
Sbjct: 1   AVPGMVGGMLLHCQSPRRFEQSGGWIKALLEEAENERMHLMTFIELAKPQWYERAIVFAV 60

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWR 288
           QGVFFNAYFL YL SPK AHR+ GYLEEEA+ SYTEFLK+LD G+ ENVPAPAIA DYWR
Sbjct: 61  QGVFFNAYFLTYLASPKVAHRITGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAIDYWR 120

Query: 289 LPPNSTLKDVVLVVRADEAHHR 310
           LP  STL+DVV V+RADEAHHR
Sbjct: 121 LPAESTLRDVVEVIRADEAHHR 142


>gi|399545055|ref|YP_006558363.1| alternative oxidase [Marinobacter sp. BSs20148]
 gi|399160387|gb|AFP30950.1| Alternative oxidase [Marinobacter sp. BSs20148]
          Length = 215

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 114/195 (58%), Positives = 150/195 (76%)

Query: 124 LKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKS 183
           L KHH P+ FSD++A    + LR+  DLFF +RYG RA++LETVAAVPGMVGGM+ H +S
Sbjct: 17  LSKHHTPSGFSDRVAFRLTRLLRFFADLFFAKRYGHRAVVLETVAAVPGMVGGMVGHMRS 76

Query: 184 LRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLIS 243
           LRR E +  WI  LLEEAENERMHLMTF+++A+P + ER L+   QG+FF ++   Y++S
Sbjct: 77  LRRMEDNREWIHTLLEEAENERMHLMTFVQIAQPSFLERVLILLAQGIFFTSFLFLYIVS 136

Query: 244 PKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVR 303
            + AHR+VGY EEEA++SY E+L E+D G +ENV AP IA DYW+LP ++TL+DV++VVR
Sbjct: 137 GRTAHRLVGYFEEEAVYSYGEYLAEVDSGRLENVAAPQIAIDYWKLPADATLRDVIIVVR 196

Query: 304 ADEAHHRDVNHYASD 318
            DEA HRDVNH  +D
Sbjct: 197 LDEAGHRDVNHRFAD 211


>gi|387130678|ref|YP_006293568.1| oxidase [Methylophaga sp. JAM7]
 gi|386271967|gb|AFJ02881.1| putative oxidase [Methylophaga sp. JAM7]
          Length = 206

 Score =  253 bits (645), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 116/191 (60%), Positives = 144/191 (75%)

Query: 124 LKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKS 183
           L  H+ P   SD++AL  VK +R+  D FF  RYG RA++LETVAAVPGMVGG L H +S
Sbjct: 7   LHSHYQPQCLSDRIALRVVKFMRFFADAFFSGRYGHRAVVLETVAAVPGMVGGALQHLRS 66

Query: 184 LRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLIS 243
           LRR +   GWI+ LL+EAENERMHLMTF+ +AKP W ER ++   QGVF+N +FL YL S
Sbjct: 67  LRRMQDDEGWIRTLLDEAENERMHLMTFIHIAKPSWLERLIIIIAQGVFYNLFFLLYLFS 126

Query: 244 PKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVR 303
            K AHR+VGYLEEEA++SYTE+L  +D G  +N+PAP IA DYW+LP N+ L+DV+L VR
Sbjct: 127 SKVAHRIVGYLEEEAVYSYTEYLNGVDDGTYDNIPAPQIAIDYWQLPDNARLRDVILKVR 186

Query: 304 ADEAHHRDVNH 314
            DEA HRDVNH
Sbjct: 187 DDEAGHRDVNH 197


>gi|254490126|ref|ZP_05103317.1| Alternative oxidase superfamily [Methylophaga thiooxidans DMS010]
 gi|224464612|gb|EEF80870.1| Alternative oxidase superfamily [Methylophaga thiooxydans DMS010]
          Length = 207

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 117/188 (62%), Positives = 145/188 (77%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 186
           HH P+ FSD++AL  VK +R+  D FF  RYG RA++LETVAAVPGMVGG L H +SLRR
Sbjct: 10  HHQPSCFSDRLALRIVKFMRFFADAFFSGRYGHRAVILETVAAVPGMVGGALQHLRSLRR 69

Query: 187 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 246
            +   GWI+ LL+EAENERMHL+TF+ +AKP  +ER LV   QGVF+N +FL YL S + 
Sbjct: 70  MKDDDGWIETLLDEAENERMHLLTFIHIAKPNMFERLLVIITQGVFYNLFFLLYLCSSRV 129

Query: 247 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 306
           AHR+VGYLEEEA++SYTE+L  +D G  ENVPAP IA DYW+LP ++ L+DV+L VR DE
Sbjct: 130 AHRIVGYLEEEAVYSYTEYLNGVDNGQYENVPAPQIAIDYWQLPADARLRDVLLKVRDDE 189

Query: 307 AHHRDVNH 314
           A HRDVNH
Sbjct: 190 AKHRDVNH 197


>gi|254418793|ref|ZP_05032517.1| Alternative oxidase superfamily [Brevundimonas sp. BAL3]
 gi|196184970|gb|EDX79946.1| Alternative oxidase superfamily [Brevundimonas sp. BAL3]
          Length = 230

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 129/222 (58%), Positives = 161/222 (72%), Gaps = 4/222 (1%)

Query: 119 DLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGML 178
           DL  D+  HHAP + SD++A   VKSLR+  D FF +RYG RA++LETVAAVPGMVG  L
Sbjct: 5   DLLSDIDVHHAPRSVSDRIAWGFVKSLRFCADTFFAKRYGHRAVVLETVAAVPGMVGATL 64

Query: 179 LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 238
            H K+LRR     GWI+ L++EAENERMHLMTF+EV +P  +ER +V AVQ +F+  +F 
Sbjct: 65  THLKALRRMSDDRGWIRTLMDEAENERMHLMTFIEVCQPTLFERFIVMAVQWLFYLFFFG 124

Query: 239 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDV 298
            YL+SP+ AHR+VGY EEEA+ SYT +L E+D+G  EN PAP IA DYW LP ++TL+DV
Sbjct: 125 LYLVSPRTAHRVVGYFEEEAVISYTHYLAEIDEGRSENAPAPKIARDYWGLPASATLRDV 184

Query: 299 VLVVRADEAHHRDVNHYASDIHYQG--RQLRESPA--PLGYH 336
           VLVVRADEAHHRDVNH  +D    G  + +R  PA  PL  H
Sbjct: 185 VLVVRADEAHHRDVNHGFADELAGGPVKAVRPGPAHVPLQPH 226


>gi|149200905|ref|ZP_01877880.1| putative oxidase [Roseovarius sp. TM1035]
 gi|149145238|gb|EDM33264.1| putative oxidase [Roseovarius sp. TM1035]
          Length = 217

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 117/215 (54%), Positives = 155/215 (72%)

Query: 110 FRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAA 169
            RP   +E D +  L+ HH+P    D++AL  VK +R   D FF +RYG RA++LETVAA
Sbjct: 1   MRPERQFETDETATLEVHHSPRDIHDRIALRIVKIMRVFADAFFSKRYGHRAVVLETVAA 60

Query: 170 VPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQ 229
           VPGMVGG+L H KSLR      GWI+ LL+EAENERMHLMTF+++A+P   ER L+   Q
Sbjct: 61  VPGMVGGLLQHLKSLRHIREDQGWIRELLDEAENERMHLMTFVQIAQPSRGERWLIMIAQ 120

Query: 230 GVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRL 289
            +F+N +F  YL++P+ AHR+VGYLEEEA+ SYT++L E+D G  +NVPAP IA DYW+L
Sbjct: 121 AIFYNVFFFTYLLAPRTAHRIVGYLEEEAVVSYTQYLAEIDAGRQDNVPAPQIAIDYWKL 180

Query: 290 PPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 324
             ++ L+DVV+ VRADEAHHRD NH  ++   +GR
Sbjct: 181 SQDARLRDVVIAVRADEAHHRDTNHGFANQIMEGR 215


>gi|410620808|ref|ZP_11331666.1| alternative oxidase 2, mitochondrial [Glaciecola pallidula DSM
           14239 = ACAM 615]
 gi|410159691|dbj|GAC27040.1| alternative oxidase 2, mitochondrial [Glaciecola pallidula DSM
           14239 = ACAM 615]
          Length = 214

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 112/195 (57%), Positives = 149/195 (76%)

Query: 124 LKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKS 183
           L KHH P+ FSD++A    K LR+  DLFF +RYG RA++LETVAAVPGMVGGM+ H +S
Sbjct: 17  LSKHHTPSGFSDRLAFRLTKLLRFFADLFFAKRYGHRAVVLETVAAVPGMVGGMIRHMRS 76

Query: 184 LRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLIS 243
           LRR +     I  LLEEAENERMHL+TF+++A+P ++ER L+   QGVFF ++   Y++S
Sbjct: 77  LRRMKDDREAIHTLLEEAENERMHLLTFVQIAQPSFFERMLILLAQGVFFTSFLFLYVVS 136

Query: 244 PKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVR 303
            + AHR+VGY EEEA++SY+E+L E+D G +ENV AP IA DYW+LP ++TL+DV++ VR
Sbjct: 137 GRTAHRLVGYFEEEAVYSYSEYLAEVDSGRLENVNAPQIAIDYWKLPADATLRDVIIAVR 196

Query: 304 ADEAHHRDVNHYASD 318
            DEA HRDVNH  +D
Sbjct: 197 NDEAGHRDVNHQFAD 211


>gi|208436640|gb|ACI28866.1| mitochondrial alternative oxidase 2, partial [Vitis vinifera]
          Length = 143

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 113/143 (79%), Positives = 129/143 (90%)

Query: 168 AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 227
           AAVPGMVGGMLLH +SLR+FE SGGWIKALLEEAENERMHLMT +E+ +PKWYER LV  
Sbjct: 1   AAVPGMVGGMLLHLRSLRKFEQSGGWIKALLEEAENERMHLMTMVELVQPKWYERVLVLT 60

Query: 228 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYW 287
           VQGVFFNA+F+ YL+SPK AHR+VGYLEEEAIHSYTE+LK++D G IENVPAPAIA DYW
Sbjct: 61  VQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGKIENVPAPAIAIDYW 120

Query: 288 RLPPNSTLKDVVLVVRADEAHHR 310
           RLP ++TLKDV+ V+RADEAHHR
Sbjct: 121 RLPKDATLKDVITVIRADEAHHR 143


>gi|393726239|ref|ZP_10346166.1| alternative oxidase [Sphingomonas sp. PAMC 26605]
          Length = 237

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 122/207 (58%), Positives = 151/207 (72%), Gaps = 1/207 (0%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 186
           HH P  F+D+ AL   K LR+  D+FF +RYG RA++LETVAAVPGMVG M  H K LR 
Sbjct: 24  HHVPHGFADQFALGFTKLLRFCADIFFAKRYGHRAIVLETVAAVPGMVGAMFTHLKCLRW 83

Query: 187 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 246
                GWI+ L+EEAENERMHLMTF+E+AKP W+ER ++  VQGVF  A+ L YL+S K 
Sbjct: 84  MRDDQGWIRTLMEEAENERMHLMTFVEIAKPTWFERTVILLVQGVFLIAFSLLYLLSAKT 143

Query: 247 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 306
           AHR+VGY EEEA+ SYT +L+E+D+G   NVPAPAIA  YW++  ++TL+DVVLVVR DE
Sbjct: 144 AHRVVGYFEEEAVTSYTLYLQEIDEGRSPNVPAPAIARHYWKMADDATLRDVVLVVRDDE 203

Query: 307 AHHRDVNH-YASDIHYQGRQLRESPAP 332
           AHHRDVNH +AS I    R    +P P
Sbjct: 204 AHHRDVNHDFASTIGGLLRDRASAPYP 230


>gi|85710461|ref|ZP_01041525.1| putative oxidase [Erythrobacter sp. NAP1]
 gi|85687639|gb|EAQ27644.1| putative oxidase [Erythrobacter sp. NAP1]
          Length = 232

 Score =  247 bits (631), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 117/202 (57%), Positives = 149/202 (73%)

Query: 117 EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGG 176
           + +   D+  H AP + SD +A   VK LR+  D FF RRYG RA++LETVAAVPGMVGG
Sbjct: 12  QVNYDADVTSHVAPQSKSDHVAFAFVKLLRFFADTFFARRYGHRAVVLETVAAVPGMVGG 71

Query: 177 MLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAY 236
           +L H ++LRR     GWI+ LL+EAENERMHLMTF+E+AKP  +ER L+ +VQ VF+N Y
Sbjct: 72  LLQHLRALRRMRDDEGWIRTLLDEAENERMHLMTFIEIAKPNAFERFLILSVQLVFYNFY 131

Query: 237 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLK 296
           F  YL++P+ AHR+VGY EEEA+ SYT +LKE++ G  ENVPAP IA DYW+L  ++ L 
Sbjct: 132 FFLYLLAPRTAHRVVGYFEEEAVISYTAYLKEVESGRHENVPAPQIAIDYWQLHSDARLS 191

Query: 297 DVVLVVRADEAHHRDVNHYASD 318
           DV++ VRADEA HRDVNH   D
Sbjct: 192 DVIIAVRADEAEHRDVNHCFVD 213


>gi|254455703|ref|ZP_05069132.1| alternative oxidase 2 [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082705|gb|EDZ60131.1| alternative oxidase 2 [Candidatus Pelagibacter sp. HTCC7211]
          Length = 222

 Score =  247 bits (631), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 118/192 (61%), Positives = 145/192 (75%)

Query: 123 DLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCK 182
           DL+KH+ P   SD++AL   K LR+  D FF+++YG RA++LETVAAVPGMV GML H +
Sbjct: 3   DLEKHYKPQNKSDRIALAFTKFLRYIADTFFKKKYGHRAVVLETVAAVPGMVAGMLTHLR 62

Query: 183 SLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLI 242
           SLR+ E   GWIK LLEEAENERMHLMTF++VAKP   ER ++   Q +F   Y + YL+
Sbjct: 63  SLRKMEDDRGWIKILLEEAENERMHLMTFIQVAKPTSLERFIIIIAQFLFIIMYSIIYLV 122

Query: 243 SPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVV 302
           S + AHR+VGY EEEA+ SYTE+LKEL+ G I++ PAP IA DYW LP +STLKDVV VV
Sbjct: 123 SQRTAHRIVGYFEEEAVFSYTEYLKELESGRIDDQPAPKIAIDYWNLPLHSTLKDVVRVV 182

Query: 303 RADEAHHRDVNH 314
           R DEA HRDVNH
Sbjct: 183 RDDEAGHRDVNH 194


>gi|452753499|ref|ZP_21953223.1| Alternative oxidase [alpha proteobacterium JLT2015]
 gi|451959189|gb|EMD81621.1| Alternative oxidase [alpha proteobacterium JLT2015]
          Length = 229

 Score =  247 bits (631), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 120/199 (60%), Positives = 149/199 (74%), Gaps = 1/199 (0%)

Query: 122 IDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHC 181
           IDL  HH P  FSD++A    K+LRW  D FF  RYG RA++LETVAAVPGMVG  + H 
Sbjct: 6   IDLGVHHKPRGFSDRVAFGFTKALRWCADTFFAERYGHRAVVLETVAAVPGMVGATINHL 65

Query: 182 KSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYL 241
             LRR     GWIK L++EAENERMHLMTF+E++KP  +ERA++  VQ VF+  +F  YL
Sbjct: 66  ACLRRMCDDKGWIKTLMDEAENERMHLMTFIEISKPTLFERAVIIGVQWVFYLFFFALYL 125

Query: 242 ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLV 301
           +S K AHR+VGY EEEA+ SYT +L E+D+G  +NVPAP IA  YW LP ++TL+DVVLV
Sbjct: 126 VSSKTAHRVVGYFEEEAVISYTHYLTEIDEGRSDNVPAPEIAKKYWDLPDSATLRDVVLV 185

Query: 302 VRADEAHHRDVNH-YASDI 319
           VRADEAHHRDVNH YA+++
Sbjct: 186 VRADEAHHRDVNHGYANEL 204


>gi|254420740|ref|ZP_05034464.1| Alternative oxidase superfamily [Brevundimonas sp. BAL3]
 gi|196186917|gb|EDX81893.1| Alternative oxidase superfamily [Brevundimonas sp. BAL3]
          Length = 239

 Score =  247 bits (630), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 117/194 (60%), Positives = 147/194 (75%), Gaps = 1/194 (0%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 186
           HH P  FSD+ AL   K LR+  D FF +RYG RA++LETVAAVPGMVG  + H   LRR
Sbjct: 24  HHEPHGFSDRFALGFTKLLRFSADTFFAKRYGHRAIVLETVAAVPGMVGATIQHLTCLRR 83

Query: 187 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 246
            +   GWI+ L+EEAENERMHLMTF+EVAKP ++ER ++   Q VF+  +FL YL+S + 
Sbjct: 84  MKDDDGWIRTLMEEAENERMHLMTFIEVAKPTYFERLVIQIAQAVFYVGFFLLYLVSART 143

Query: 247 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 306
           AHR+VGY EEEA+ SYT +LKE+D+G   NVPAP IA  YW++ P++TL+DVVLVVRADE
Sbjct: 144 AHRVVGYFEEEAVISYTLYLKEIDEGRSPNVPAPEIAKHYWKMAPDATLRDVVLVVRADE 203

Query: 307 AHHRDVNH-YASDI 319
           AHHRDVNH +AS +
Sbjct: 204 AHHRDVNHGFASSL 217


>gi|87199593|ref|YP_496850.1| alternative oxidase [Novosphingobium aromaticivorans DSM 12444]
 gi|87135274|gb|ABD26016.1| alternative oxidase [Novosphingobium aromaticivorans DSM 12444]
          Length = 229

 Score =  246 bits (629), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 119/193 (61%), Positives = 143/193 (74%)

Query: 122 IDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHC 181
           IDL  HH P   SD++A    K+LRW  D FF  RYG RA++LETVAAVPGMVG  + H 
Sbjct: 6   IDLSVHHKPGGLSDRIAFGFTKALRWCADTFFAERYGHRAVVLETVAAVPGMVGATINHL 65

Query: 182 KSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYL 241
             LRR     GWIK L++EAENERMHLMTF+E++KP  +ERA++  VQ VF+  +F  YL
Sbjct: 66  ACLRRMCDDKGWIKTLMDEAENERMHLMTFIEISKPTLFERAVIMGVQWVFYLFFFGLYL 125

Query: 242 ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLV 301
           +SPK AHR+VGY EEEA+ SYT +L E+D+G   NVPAPAIA  YW LP N+ L+DVVLV
Sbjct: 126 VSPKTAHRVVGYFEEEAVISYTHYLAEIDQGRSANVPAPAIAKRYWGLPDNAMLRDVVLV 185

Query: 302 VRADEAHHRDVNH 314
           VRADEAHHRDVNH
Sbjct: 186 VRADEAHHRDVNH 198


>gi|148550731|ref|YP_001260170.1| alternative oxidase [Sphingomonas wittichii RW1]
 gi|402825917|ref|ZP_10875159.1| alternative oxidase [Sphingomonas sp. LH128]
 gi|148503150|gb|ABQ71403.1| Alternative oxidase [Sphingomonas wittichii RW1]
 gi|402260473|gb|EJU10594.1| alternative oxidase [Sphingomonas sp. LH128]
          Length = 229

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 119/193 (61%), Positives = 143/193 (74%)

Query: 122 IDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHC 181
           IDL  HH  +  SDK+AL   K LRW  D FF +RYG RA++LETVAAVPGMVG  + H 
Sbjct: 6   IDLGVHHKASGLSDKVALGFTKVLRWCADTFFAQRYGHRAVVLETVAAVPGMVGATINHL 65

Query: 182 KSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYL 241
             LRR     GWIK L++EAENERMHLMTF+E++KP W+ERA++  VQ VF+  +F  YL
Sbjct: 66  ACLRRMCDDKGWIKTLMDEAENERMHLMTFIEISKPTWFERAVIIGVQWVFYVFFFALYL 125

Query: 242 ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLV 301
           +S K AHR+VGY EEEA+ SYT +L E+D+G   NVPAP IA  YW LP  +TL+DVVLV
Sbjct: 126 LSAKTAHRVVGYFEEEAVISYTHYLAEIDEGRSANVPAPEIAKRYWGLPEEATLRDVVLV 185

Query: 302 VRADEAHHRDVNH 314
           VRADEAHHRDVNH
Sbjct: 186 VRADEAHHRDVNH 198


>gi|208436652|gb|ACI28872.1| mitochondrial alternative oxidase 1b, partial [Vitis vinifera]
          Length = 138

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 114/138 (82%), Positives = 125/138 (90%)

Query: 173 MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVF 232
           MVGGM L+C+SLRRFE SGGWIKALLEEAENERMHLMTF+E+AKP+WYERALVFAVQGVF
Sbjct: 1   MVGGMFLYCQSLRRFEQSGGWIKALLEEAENERMHLMTFIELAKPQWYERALVFAVQGVF 60

Query: 233 FNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPN 292
           FNAYFL YL SPK AHR+ GYLEEEA+ SYTEFLK+LD G+ ENVPAPAIA DYWRLP  
Sbjct: 61  FNAYFLTYLASPKVAHRITGYLEEEAVRSYTEFLKDLDNGSFENVPAPAIAIDYWRLPAE 120

Query: 293 STLKDVVLVVRADEAHHR 310
           STL+DVV V+RADEAHHR
Sbjct: 121 STLRDVVEVIRADEAHHR 138


>gi|254452548|ref|ZP_05065985.1| alternative oxidase [Octadecabacter arcticus 238]
 gi|198266954|gb|EDY91224.1| alternative oxidase [Octadecabacter arcticus 238]
          Length = 217

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 117/203 (57%), Positives = 150/203 (73%)

Query: 116 YEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVG 175
           YEA+L+ +   HH P  F D+ AL  VK LR   D FF  RY  RA++LETVAAVPGMVG
Sbjct: 7   YEAELASENMHHHVPQDFRDRFALRLVKFLRVFADKFFAGRYSHRAVVLETVAAVPGMVG 66

Query: 176 GMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNA 235
           G+L H K+LR      GWI+ L+EEA+NERMHLMTF+E+A+P  +ER LV A Q +F+N 
Sbjct: 67  GLLQHLKALRHIRDDQGWIRELIEEADNERMHLMTFIEIAQPSKFERFLVAATQLIFYNF 126

Query: 236 YFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTL 295
           YF  YL++P+ AHR+VGYLEEEA+ SYT++L+++D G IEN+ AP IA DYW+L  N+ L
Sbjct: 127 YFFLYLLAPRVAHRVVGYLEEEAVVSYTQYLEQIDAGLIENIAAPQIAIDYWKLSANARL 186

Query: 296 KDVVLVVRADEAHHRDVNHYASD 318
           +DVVLV+R DEA HRD NH  +D
Sbjct: 187 RDVVLVIREDEAGHRDKNHEFAD 209


>gi|170674867|gb|ACB30184.1| mitochondrial alternative oxidase 2 [Hypericum perforatum]
          Length = 147

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 111/147 (75%), Positives = 129/147 (87%)

Query: 167 VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 226
           VAAVPGMVGGMLLH +SLR+FE +GGW+KALLEEAENERMHLMT +E+ +PKWYER LV 
Sbjct: 1   VAAVPGMVGGMLLHLRSLRKFEQTGGWVKALLEEAENERMHLMTMVELVQPKWYERMLVL 60

Query: 227 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDY 286
            VQG+FFNAYF+ YL+SPK AHR+ GYLEEEAIHSYTE+LK++  G IENV APAIA DY
Sbjct: 61  IVQGLFFNAYFVIYLVSPKLAHRVTGYLEEEAIHSYTEYLKDIRSGKIENVKAPAIAIDY 120

Query: 287 WRLPPNSTLKDVVLVVRADEAHHRDVN 313
           WRLP  +TL+DV+ V+RADEAHHRDVN
Sbjct: 121 WRLPKEATLEDVITVIRADEAHHRDVN 147


>gi|254436730|ref|ZP_05050224.1| Alternative oxidase superfamily [Octadecabacter antarcticus 307]
 gi|198252176|gb|EDY76490.1| Alternative oxidase superfamily [Octadecabacter antarcticus 307]
          Length = 217

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 116/200 (58%), Positives = 148/200 (74%)

Query: 115 AYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMV 174
           AY A+L      HH P  F D+ AL  VK +R   D FF  RYG RA++LETVAAVPGMV
Sbjct: 6   AYAAELDDKNLHHHEPQDFRDRFALRLVKFMRVFADKFFAHRYGHRAVVLETVAAVPGMV 65

Query: 175 GGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFN 234
           GG+L H K+LR+     GWI+ L+EEA+NERMHLMTF+E+A+P  +ER L+ A Q VF+N
Sbjct: 66  GGLLQHLKALRQIRDDQGWIRELIEEADNERMHLMTFIEIAQPSRFERFLIAATQLVFYN 125

Query: 235 AYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNST 294
            YF  YL++P+ AHR+VGYLEEEA+ SYT++L ++D G +ENVPAP IA DYW+LP  + 
Sbjct: 126 LYFFLYLLAPRVAHRVVGYLEEEAVVSYTQYLAQIDAGAVENVPAPQIAKDYWKLPDGAR 185

Query: 295 LKDVVLVVRADEAHHRDVNH 314
           L++VVLV+R DEA HRD NH
Sbjct: 186 LREVVLVIREDEAGHRDKNH 205


>gi|389730180|ref|ZP_10189355.1| alternative oxidase [Rhodanobacter sp. 115]
 gi|388440952|gb|EIL97272.1| alternative oxidase [Rhodanobacter sp. 115]
          Length = 232

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 113/207 (54%), Positives = 148/207 (71%)

Query: 112 PWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVP 171
           P  + + +  I L +HH P    D++A   VK LR+  D FF +RYG RA++LETVAAVP
Sbjct: 10  PKRSPQPEEQISLTRHHEPRGARDRIAFGFVKFLRFIADTFFAKRYGHRAVVLETVAAVP 69

Query: 172 GMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGV 231
           GMVG  L H + LRR     GWI  LL+EAENERMHLMTFM + +P W+ER +V  VQG+
Sbjct: 70  GMVGATLQHLRCLRRMRDDDGWIYTLLDEAENERMHLMTFMAIIRPTWFERVVVVIVQGI 129

Query: 232 FFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPP 291
           F+NA+FL YL SP+ AHR+VGY EEEA+ SY  +L ++D G  ENVPAP +A DYW LP 
Sbjct: 130 FYNAFFLLYLCSPRTAHRVVGYFEEEAVISYNHYLAQIDSGADENVPAPHVAIDYWSLPA 189

Query: 292 NSTLKDVVLVVRADEAHHRDVNHYASD 318
           ++ L+DV++++RA+EA HRDVNH  +D
Sbjct: 190 DARLRDVIVIIRAEEAMHRDVNHGFAD 216


>gi|395006406|ref|ZP_10390227.1| Alternative oxidase [Acidovorax sp. CF316]
 gi|394315617|gb|EJE52407.1| Alternative oxidase [Acidovorax sp. CF316]
          Length = 221

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 114/206 (55%), Positives = 150/206 (72%)

Query: 114 EAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGM 173
           + +  D +  L  HH     SD++AL    +LR+  D FF +RYG RA++LETVAAVPGM
Sbjct: 4   DTHTPDFARSLDAHHPAHGLSDRVALAITLALRFFADTFFAKRYGNRAIVLETVAAVPGM 63

Query: 174 VGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFF 233
           VGGML+H + LR      GWI+ LL+EAENERMHLMTF+E+A+P W+ERA++   Q VFF
Sbjct: 64  VGGMLVHLRCLRWMVDDEGWIRTLLDEAENERMHLMTFIEIARPSWFERAVILLTQAVFF 123

Query: 234 NAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNS 293
             +F  YL+S + AHR+VGY EE+A+ SYT +L E+D+G +ENVPAP IA  YW+LP ++
Sbjct: 124 VCFFALYLVSSRTAHRLVGYFEEQAVVSYTLYLAEIDEGRVENVPAPDIAIAYWKLPADA 183

Query: 294 TLKDVVLVVRADEAHHRDVNHYASDI 319
            L+DVVL VRADEA HRDVNH  +D+
Sbjct: 184 RLRDVVLAVRADEAGHRDVNHGFADV 209


>gi|14599480|gb|AAK70938.1| alternative oxidase 2 [Mangifera indica]
          Length = 144

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 112/144 (77%), Positives = 130/144 (90%)

Query: 164 LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERA 223
           LETVAAVPGMVGGMLLH KSLR+ E SGGWIKALLEEAENERMHLMT +E+ +PKWYER 
Sbjct: 1   LETVAAVPGMVGGMLLHLKSLRKLEQSGGWIKALLEEAENERMHLMTMVELVQPKWYERL 60

Query: 224 LVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIA 283
           LV AVQGVFFN++F+ Y++SPK AHR+VGYLEEEAIHSYTE+LK++D G I+N+PAPAIA
Sbjct: 61  LVLAVQGVFFNSFFVLYVLSPKLAHRIVGYLEEEAIHSYTEYLKDIDSGAIKNIPAPAIA 120

Query: 284 TDYWRLPPNSTLKDVVLVVRADEA 307
            DYWRLP ++TLKDV+ VVRADEA
Sbjct: 121 IDYWRLPKDATLKDVITVVRADEA 144


>gi|170674873|gb|ACB30187.1| mitochondrial alternative oxidase 1c, partial [Hypericum
           perforatum]
          Length = 154

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 111/147 (75%), Positives = 127/147 (86%)

Query: 86  IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 145
           + SYWGV   +  K+DGS W+WNCFRPWE Y+AD SID+ KHH  TTF  K A WTV+SL
Sbjct: 7   VSSYWGVPPSRATKEDGSPWRWNCFRPWETYKADTSIDVTKHHKATTFMGKFAYWTVQSL 66

Query: 146 RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 205
           ++PT LFFQRR+ C AM+LETVAAVPGMVGGMLLH KS+RRFEHSGGWIKALLEEAENER
Sbjct: 67  KFPTYLFFQRRHMCHAMLLETVAAVPGMVGGMLLHLKSIRRFEHSGGWIKALLEEAENER 126

Query: 206 MHLMTFMEVAKPKWYERALVFAVQGVF 232
           MHLMTF+E+++PKWYERALVFAVQGVF
Sbjct: 127 MHLMTFLELSQPKWYERALVFAVQGVF 153


>gi|295690408|ref|YP_003594101.1| alternative oxidase [Caulobacter segnis ATCC 21756]
 gi|295432311|gb|ADG11483.1| Alternative oxidase [Caulobacter segnis ATCC 21756]
          Length = 229

 Score =  244 bits (624), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 122/193 (63%), Positives = 143/193 (74%)

Query: 122 IDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHC 181
           IDL  HH P   SD +A   VK+LR+  D FF +RYG RA++LETVAAVPGMVG  L H 
Sbjct: 6   IDLDVHHQPKGVSDVIAFGFVKALRFCADTFFAKRYGHRAVVLETVAAVPGMVGATLNHL 65

Query: 182 KSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYL 241
           K LRR E   GWIK L++EAENERMHLMTF+EVAKP  +ER +V A Q VF+  +F  YL
Sbjct: 66  KCLRRMEGDKGWIKTLMDEAENERMHLMTFIEVAKPTLFERFVVVAAQWVFYLFFFALYL 125

Query: 242 ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLV 301
           IS K AHR+VGY EEEA+ SYT +L E+D+G   NV AP IA DYW+LP  +TL+DVV V
Sbjct: 126 ISSKTAHRVVGYFEEEAVISYTHYLAEIDEGRSANVAAPQIALDYWKLPTGATLRDVVEV 185

Query: 302 VRADEAHHRDVNH 314
           VRADEAHHRDVNH
Sbjct: 186 VRADEAHHRDVNH 198


>gi|297539819|ref|YP_003675588.1| Alternative oxidase [Methylotenera versatilis 301]
 gi|297259166|gb|ADI31011.1| Alternative oxidase [Methylotenera versatilis 301]
          Length = 212

 Score =  244 bits (622), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 110/193 (56%), Positives = 143/193 (74%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 186
           HH P   SD++AL   K LR+  D FF  RYG RA++LETVA VPGMV G L H K++R 
Sbjct: 14  HHTPENLSDRVALRITKILRFFADTFFANRYGHRAVVLETVAGVPGMVAGALQHLKAIRL 73

Query: 187 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 246
            +   GWI+ LL+EAENERMHLMTF+ +A+P  +ER L+   QG+F+N +FL YLIS K 
Sbjct: 74  MQPDNGWIRKLLDEAENERMHLMTFIHIAQPNRFERGLIMLAQGIFYNLFFLLYLISSKT 133

Query: 247 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 306
           AHR+VGY EEEA++SYTE+L  +D G  ENVPAP IA DYW+L  ++ L++V++ VR DE
Sbjct: 134 AHRLVGYFEEEAVYSYTEYLAGVDNGTYENVPAPQIAIDYWQLDASARLREVIIAVRNDE 193

Query: 307 AHHRDVNHYASDI 319
           A+HRDVNHY +D+
Sbjct: 194 ANHRDVNHYFADV 206


>gi|384500340|gb|EIE90831.1| hypothetical protein RO3G_15542 [Rhizopus delemar RA 99-880]
          Length = 260

 Score =  243 bits (620), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 116/193 (60%), Positives = 141/193 (73%)

Query: 126 KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLR 185
           KH  P +  DK A +TVK LR   D +F + +  RA+MLET+AAVPGMVG ML H KSLR
Sbjct: 41  KHRVPASLGDKGAYYTVKCLRLLPDTYFGKDHYMRAVMLETIAAVPGMVGAMLRHMKSLR 100

Query: 186 RFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPK 245
           R     GWI  LL EAENERMHLMT+M+  KP  ++R +V   QG+FFNAYFL YL+SPK
Sbjct: 101 RMSEDNGWISHLLHEAENERMHLMTWMKCLKPTVWDRLMVLGAQGIFFNAYFLLYLVSPK 160

Query: 246 FAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRAD 305
            AHRM GYLEEEA+ SYT FL ++D+G I+N PAP +A +Y+ L P +T++DVVL VRAD
Sbjct: 161 TAHRMCGYLEEEAVISYTHFLNDIDQGIIKNGPAPQVAIEYYNLHPQATIRDVVLAVRAD 220

Query: 306 EAHHRDVNHYASD 318
           EA HRD NHY SD
Sbjct: 221 EAVHRDANHYLSD 233


>gi|395492241|ref|ZP_10423820.1| alternative oxidase [Sphingomonas sp. PAMC 26617]
          Length = 228

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 123/216 (56%), Positives = 154/216 (71%), Gaps = 4/216 (1%)

Query: 122 IDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHC 181
           IDL  HH P   SD+ AL   + LR+  D FF +RYG RA++LETVAAVPGMVG  L H 
Sbjct: 7   IDLSIHHPPHGGSDRFALAATRLLRFIADTFFAKRYGHRAIVLETVAAVPGMVGATLTHL 66

Query: 182 KSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYL 241
           + LR+ +   GWI+ L+EEAENERMHLMTF+EV KP  +ER +V  VQ +F+  +F  YL
Sbjct: 67  RCLRQMKPDRGWIRILMEEAENERMHLMTFLEVCKPTLFERLVVLVVQWLFYLGFFALYL 126

Query: 242 ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLV 301
           +SPK AHR+VGY EEEA+ SYT +L E+D G   NVPAPAIA  YW L  N+TL+DV+LV
Sbjct: 127 LSPKTAHRLVGYFEEEAVISYTHYLAEIDAGRSANVPAPAIARRYWGLSDNATLRDVILV 186

Query: 302 VRADEAHHRDVNH-YASDIHYQGRQLRESPAPLGYH 336
           VRADEAHHRDVNH +A+D+   G +   + AP  +H
Sbjct: 187 VRADEAHHRDVNHSFAADL---GGKSPSAIAPYPWH 219


>gi|114571108|ref|YP_757788.1| alternative oxidase [Maricaulis maris MCS10]
 gi|114341570|gb|ABI66850.1| alternative oxidase [Maricaulis maris MCS10]
          Length = 214

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 113/197 (57%), Positives = 144/197 (73%)

Query: 122 IDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHC 181
           I L +H  P    D +A   VK LR+  D FF +RYG RA++LETVAAVPGMVGG+L H 
Sbjct: 7   IILDQHRKPEGLGDHIAFGFVKFLRFIADTFFAKRYGHRAVVLETVAAVPGMVGGLLQHL 66

Query: 182 KSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYL 241
           K++RR     GWI+ LL+EAENERMHLMTF+E+AKP  +ER ++  VQ +F+N YF  YL
Sbjct: 67  KAIRRIRDDEGWIRTLLDEAENERMHLMTFIEIAKPTLFERIVIMVVQAIFYNCYFFLYL 126

Query: 242 ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLV 301
            +P+ AHR+VGY EEEA+ SYT++L+ +D G  ENV AP IA DYW LP N+ L++VV+ 
Sbjct: 127 FAPRTAHRVVGYFEEEAVISYTQYLEGIDAGRHENVAAPQIAIDYWNLPANARLREVVIA 186

Query: 302 VRADEAHHRDVNHYASD 318
           VRADEA HRDVNH  +D
Sbjct: 187 VRADEAGHRDVNHDFAD 203


>gi|94498336|ref|ZP_01304895.1| Alternative oxidase [Sphingomonas sp. SKA58]
 gi|94422216|gb|EAT07258.1| Alternative oxidase [Sphingomonas sp. SKA58]
          Length = 236

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 120/213 (56%), Positives = 150/213 (70%), Gaps = 6/213 (2%)

Query: 122 IDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHC 181
           +DL  HH P    D++AL   K LR   D FF +RYG RA++LETVAAVPGMVG  L H 
Sbjct: 15  VDLTVHHTPRDLRDRIALGFTKVLRLCADTFFAKRYGHRAIVLETVAAVPGMVGATLTHL 74

Query: 182 KSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYL 241
           + LRR +   GWI+ L+EEAENERMHLMTF+EVA+P  +ER ++  VQ  F+ A+F  YL
Sbjct: 75  RCLRRMQGDNGWIRTLMEEAENERMHLMTFIEVAQPSLFERLVILLVQWAFYLAFFGLYL 134

Query: 242 ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLV 301
           +S + AHR+VGY EEEA+ SYT +LKE+D+G   +V AP IA  YW+LP  +TL+DVVLV
Sbjct: 135 VSARTAHRVVGYFEEEAVISYTLYLKEIDEGRSPDVAAPMIARRYWKLPDTATLRDVVLV 194

Query: 302 VRADEAHHRDVNHYASDIHYQGRQLRESPAPLG 334
           VRADEAHHRDVNH  +D      +L   PAPL 
Sbjct: 195 VRADEAHHRDVNHGFAD------ELAGKPAPLS 221


>gi|85704383|ref|ZP_01035485.1| putative oxidase [Roseovarius sp. 217]
 gi|85670791|gb|EAQ25650.1| putative oxidase [Roseovarius sp. 217]
          Length = 221

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 113/216 (52%), Positives = 151/216 (69%)

Query: 109 CFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVA 168
           C +   +++ D + DL  HH P    D++AL  VK +R   D FF +RYG RA++LETVA
Sbjct: 4   CTKSEMSFQHDDTTDLDVHHTPRDIHDRVALRIVKFMRIFADAFFSKRYGHRAVVLETVA 63

Query: 169 AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
           AVPGMVGG+L H KS+R      GWI+ LL+EAENERMHLMTF+ +A+P   ER L+   
Sbjct: 64  AVPGMVGGLLRHLKSIRHIRDDQGWIRELLDEAENERMHLMTFIHIAQPSRAERMLIMVA 123

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWR 288
           Q +F+N +F  YL +P+ AHR+VGYLEEEA+ SYT++L E+D G  ENV AP IA DYW 
Sbjct: 124 QMIFYNVFFFTYLFAPRTAHRIVGYLEEEAVVSYTQYLAEIDAGGQENVAAPQIAIDYWN 183

Query: 289 LPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 324
           L  ++ L+DVV+ VR+DEA+HRD NH  ++   +GR
Sbjct: 184 LGADARLRDVVIRVRSDEAYHRDTNHRFANEIMEGR 219


>gi|254453559|ref|ZP_05066996.1| alternative oxidase [Octadecabacter arcticus 238]
 gi|198267965|gb|EDY92235.1| alternative oxidase [Octadecabacter arcticus 238]
          Length = 239

 Score =  242 bits (618), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 114/203 (56%), Positives = 155/203 (76%), Gaps = 3/203 (1%)

Query: 116 YEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVG 175
           +E DL   L+ HH P + +D+ AL  VK++R+  D FF  RYG RA++LETVAAVPGMVG
Sbjct: 32  FEPDL---LQVHHVPHSMNDRAALRVVKTMRFFADRFFANRYGHRAVVLETVAAVPGMVG 88

Query: 176 GMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNA 235
           G+L H +++R      GWIK L+EEA+NERMHLMTF+++A+P  +ER L+   Q VF+N 
Sbjct: 89  GLLQHLRAIRHIRDDQGWIKELIEEADNERMHLMTFIQIAQPSRFERTLIMVAQAVFYNL 148

Query: 236 YFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTL 295
           YF  YL++PK AHR+VGYLEEEA+ SY+ +L+E+D G +ENV AP IA +YW+LP ++ L
Sbjct: 149 YFFLYLLAPKTAHRVVGYLEEEAVISYSHYLEEIDAGRVENVAAPQIAINYWKLPSDARL 208

Query: 296 KDVVLVVRADEAHHRDVNHYASD 318
           +DVV+VVRADEAHHRD NH+ ++
Sbjct: 209 RDVVVVVRADEAHHRDTNHHFAN 231


>gi|289208825|ref|YP_003460891.1| oxidase [Thioalkalivibrio sp. K90mix]
 gi|288944456|gb|ADC72155.1| Alternative oxidase [Thioalkalivibrio sp. K90mix]
          Length = 209

 Score =  241 bits (616), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 112/197 (56%), Positives = 141/197 (71%)

Query: 123 DLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCK 182
           DL +HH P  FSD++A      +R   D FF RRYG RA++LETVA VPGMVG  L H +
Sbjct: 8   DLSRHHEPRDFSDRVARAFTSMMRLFADTFFARRYGHRAVVLETVAGVPGMVGATLQHLR 67

Query: 183 SLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLI 242
           SLRR E   GWI+ L+EEAENERMHL+TF+E+A P W ER L+   QG F+  YFL Y+I
Sbjct: 68  SLRRMEDDHGWIRTLMEEAENERMHLLTFIEIASPNWLERLLIILAQGFFYTLYFLIYVI 127

Query: 243 SPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVV 302
           SP+ AHR+VGY EEEA+ SYT++L+E++ G IEN+PAP  A  YW LP ++ L DV+  V
Sbjct: 128 SPRTAHRIVGYFEEEAVISYTDYLEEVETGAIENIPAPDRAIQYWDLPEDARLSDVIRAV 187

Query: 303 RADEAHHRDVNHYASDI 319
           R DEA HRDVNH  +D+
Sbjct: 188 REDEAGHRDVNHGFADL 204


>gi|378548284|sp|F4P6T0.1|AOX_BATDJ RecName: Full=Ubiquinol oxidase, mitochondrial; AltName:
           Full=Alternative oxidase; Flags: Precursor
 gi|328768827|gb|EGF78872.1| hypothetical protein BATDEDRAFT_32033 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 316

 Score =  241 bits (615), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 116/192 (60%), Positives = 143/192 (74%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 186
           H  P + SD  A   V+ LR+  DLFF+++Y  RA++LETVAAVPGMV GML H  SLR 
Sbjct: 93  HRIPVSISDWTAYGIVRFLRFFADLFFRKQYVHRAVVLETVAAVPGMVAGMLRHLTSLRL 152

Query: 187 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 246
             H GGWI  LL EAENER+HL+T+M+V +P  +ER LV  VQ +FFN YFL Y++ PK 
Sbjct: 153 MRHDGGWISHLLSEAENERLHLLTWMKVCQPSLFERMLVALVQTLFFNVYFLAYMLFPKT 212

Query: 247 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 306
           AHRMVGYLEEEAI SYT FL E+D GNI N PAP +A DYW L  ++T++DVVL VRADE
Sbjct: 213 AHRMVGYLEEEAIISYTHFLAEIDAGNIPNGPAPKLAIDYWNLKEDATVRDVVLAVRADE 272

Query: 307 AHHRDVNHYASD 318
           A+HRD+NH+ +D
Sbjct: 273 ANHRDMNHHFAD 284


>gi|404252627|ref|ZP_10956595.1| alternative oxidase [Sphingomonas sp. PAMC 26621]
          Length = 228

 Score =  241 bits (615), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 122/216 (56%), Positives = 154/216 (71%), Gaps = 4/216 (1%)

Query: 122 IDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHC 181
           IDL  HH P   SD+ AL   + LR+  D FF +RYG RA++LETVAAVPGMVG  L H 
Sbjct: 7   IDLSIHHPPHGGSDRFALAATRLLRFIADTFFAKRYGHRAIVLETVAAVPGMVGATLTHL 66

Query: 182 KSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYL 241
           + LR+ +   GWI+ L+EEAENERMHLMTF+EV KP  +ER +V  VQ +F+  +F  YL
Sbjct: 67  RCLRQMKPDRGWIRILMEEAENERMHLMTFLEVCKPTLFERLVVLVVQWLFYLGFFALYL 126

Query: 242 ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLV 301
           +SPK AHR+VGY EEEA+ SY+ +L E+D G   NVPAPAIA  YW L  N+TL+DV+LV
Sbjct: 127 LSPKTAHRLVGYFEEEAVISYSHYLAEIDAGRSANVPAPAIARRYWGLSDNATLRDVILV 186

Query: 302 VRADEAHHRDVNH-YASDIHYQGRQLRESPAPLGYH 336
           VRADEAHHRDVNH +A+D+   G +   + AP  +H
Sbjct: 187 VRADEAHHRDVNHGFAADL---GGKPPNAIAPYPWH 219


>gi|339502929|ref|YP_004690349.1| alternative oxidase-like protein [Roseobacter litoralis Och 149]
 gi|338756922|gb|AEI93386.1| alternative oxidase-like protein [Roseobacter litoralis Och 149]
          Length = 213

 Score =  241 bits (614), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 112/191 (58%), Positives = 144/191 (75%)

Query: 124 LKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKS 183
           L  H  P    D+ AL  VK +R   D FF +RYG RA++LETVAAVPGMVGGML H K+
Sbjct: 13  LIHHTPPKDVRDRFALRLVKFMRVFADKFFAKRYGHRAVVLETVAAVPGMVGGMLQHLKA 72

Query: 184 LRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLIS 243
           LRR     GW++ LL+EAENERMHLMTF++VA+P   ER L+ A QGVFFN YF+ YL +
Sbjct: 73  LRRLRDDEGWVRELLDEAENERMHLMTFIKVAEPSRLERYLIIAGQGVFFNLYFVLYLFA 132

Query: 244 PKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVR 303
           P+ AHR+V YLEEEA+ SYT++L+E+D G ++N+ AP IA DYW+LPP++ L++V++ VR
Sbjct: 133 PRTAHRVVAYLEEEAVISYTQYLEEVDAGRVQNIAAPQIAIDYWKLPPDARLREVIIAVR 192

Query: 304 ADEAHHRDVNH 314
           ADEA HRD NH
Sbjct: 193 ADEAGHRDRNH 203


>gi|329902679|ref|ZP_08273233.1| putative oxidase [Oxalobacteraceae bacterium IMCC9480]
 gi|327548651|gb|EGF33301.1| putative oxidase [Oxalobacteraceae bacterium IMCC9480]
          Length = 204

 Score =  241 bits (614), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 113/192 (58%), Positives = 141/192 (73%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 186
           HH P   SD+ AL   K LR+  D+FF +RYG RA++LETVAAVPGMVGG+L H KSLR 
Sbjct: 10  HHDPRDLSDRFALGFTKFLRFLADVFFAKRYGHRAVVLETVAAVPGMVGGLLQHLKSLRL 69

Query: 187 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 246
            +   GW+  LL+EAENERMHLMTF+++A+P  +ER ++F  Q VF+N YF  YL S K 
Sbjct: 70  IKDDNGWVHTLLDEAENERMHLMTFIQIAQPSGFERLVIFVTQLVFYNLYFFIYLFSAKT 129

Query: 247 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 306
           AHR+VGY EEEA +SYTE+L  +D G  EN+ APAIA  YW L P++ L+DVV+ VRADE
Sbjct: 130 AHRIVGYFEEEAYYSYTEYLAGIDNGEHENIAAPAIAIKYWNLHPDARLRDVVIAVRADE 189

Query: 307 AHHRDVNHYASD 318
           A HRDVNH  +D
Sbjct: 190 AGHRDVNHAYAD 201


>gi|110680239|ref|YP_683246.1| alternative oxidase [Roseobacter denitrificans OCh 114]
 gi|109456355|gb|ABG32560.1| alternative oxidase [Roseobacter denitrificans OCh 114]
          Length = 213

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 113/191 (59%), Positives = 143/191 (74%)

Query: 124 LKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKS 183
           L  H  PT   D+ AL  VK +R   D FF +RYG RA++LETVAAVPGMVGGML H K+
Sbjct: 13  LIHHTPPTDLRDRFALRLVKFMRIFADKFFAKRYGHRAVVLETVAAVPGMVGGMLQHLKA 72

Query: 184 LRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLIS 243
           LRR     GW++ LL+EAENERMHLMTF++VA+P   ER L+ A QGVFFN YFL YL +
Sbjct: 73  LRRLRDDEGWVRELLDEAENERMHLMTFIKVAEPSRLERYLIIAGQGVFFNLYFLLYLFA 132

Query: 244 PKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVR 303
           P+ AHR+V YLEEEA+ SYT++L+E+D G + N+ AP IA DYW+LP ++ L++V++ VR
Sbjct: 133 PRTAHRVVAYLEEEAVISYTQYLEEVDAGRVPNIEAPQIAIDYWKLPADARLREVIVAVR 192

Query: 304 ADEAHHRDVNH 314
           ADEA HRD NH
Sbjct: 193 ADEAGHRDRNH 203


>gi|330813949|ref|YP_004358188.1| alternative oxidase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487044|gb|AEA81449.1| alternative oxidase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 217

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 110/196 (56%), Positives = 141/196 (71%)

Query: 124 LKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKS 183
           L  HH P   SD++A    K LR+  D FF+++YG RA++LETVAAVPGM+ GML H KS
Sbjct: 3   LDSHHKPENISDRIAFGFTKFLRFVADTFFKKKYGHRAVVLETVAAVPGMIAGMLTHLKS 62

Query: 184 LRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLIS 243
           +R+ E   GWIK LL+EAENERMHLM F+ +AKP   ER ++   Q +F   Y   Y+IS
Sbjct: 63  IRKIEDDKGWIKTLLDEAENERMHLMIFVNIAKPTAMERVIILIAQFIFILMYLFIYIIS 122

Query: 244 PKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVR 303
            + AHR+VGY EEEA++SYTEFL ELD G ++N PAP IA DY+ LP ++TL+DVV+ VR
Sbjct: 123 KRTAHRIVGYFEEEAVYSYTEFLDELDSGKMKNEPAPKIAIDYYSLPLHATLRDVVVRVR 182

Query: 304 ADEAHHRDVNHYASDI 319
            DEA HRDVNH  ++I
Sbjct: 183 EDEAGHRDVNHSYANI 198


>gi|289164721|ref|YP_003454859.1| oxidase [Legionella longbeachae NSW150]
 gi|288857894|emb|CBJ11749.1| putative alternative oxidase (eukaryotic-like) [Legionella
           longbeachae NSW150]
          Length = 228

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 116/192 (60%), Positives = 141/192 (73%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 186
           H    TFSD+ A   VK  R+  D FFQRRYG RA++LETVAAVPGMVG  LLH + LR+
Sbjct: 5   HKPAKTFSDRFAYGLVKFFRFFADTFFQRRYGNRAIVLETVAAVPGMVGAALLHLRCLRK 64

Query: 187 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 246
            ++  GWIK LL+EAENERMHL+TFM +AKP W+ER ++F  Q +F   YFL Y+IS K 
Sbjct: 65  IKNDEGWIKTLLDEAENERMHLITFMYIAKPNWFERFIIFIAQAIFVILYFLMYVISSKT 124

Query: 247 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 306
           AHR VGYLEEEA+ SYT +L+ELD+G+IEN PAP IA  YW L  N+ L+DV+L VR DE
Sbjct: 125 AHRFVGYLEEEAVISYTHYLQELDEGHIENCPAPEIAKSYWGLSSNAQLRDVLLAVRKDE 184

Query: 307 AHHRDVNHYASD 318
             HRDVNH  +D
Sbjct: 185 EDHRDVNHQLAD 196


>gi|270156838|ref|ZP_06185495.1| alternative oxidase/tellurite resistance protein TehB [Legionella
           longbeachae D-4968]
 gi|269988863|gb|EEZ95117.1| alternative oxidase/tellurite resistance protein TehB [Legionella
           longbeachae D-4968]
          Length = 503

 Score =  234 bits (596), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 116/192 (60%), Positives = 141/192 (73%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 186
           H    TFSD+ A   VK  R+  D FFQRRYG RA++LETVAAVPGMVG  LLH + LR+
Sbjct: 5   HKPAKTFSDRFAYGLVKFFRFFADTFFQRRYGNRAIVLETVAAVPGMVGAALLHLRCLRK 64

Query: 187 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 246
            ++  GWIK LL+EAENERMHL+TFM +AKP W+ER ++F  Q +F   YFL Y+IS K 
Sbjct: 65  IKNDEGWIKTLLDEAENERMHLITFMYIAKPNWFERFIIFIAQAIFVILYFLMYVISSKT 124

Query: 247 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 306
           AHR VGYLEEEA+ SYT +L+ELD+G+IEN PAP IA  YW L  N+ L+DV+L VR DE
Sbjct: 125 AHRFVGYLEEEAVISYTHYLQELDEGHIENCPAPEIAKSYWGLSSNAQLRDVLLAVRKDE 184

Query: 307 AHHRDVNHYASD 318
             HRDVNH  +D
Sbjct: 185 EDHRDVNHQLAD 196


>gi|381396187|ref|ZP_09921879.1| alternative oxidase 1a, mitochondrial [Glaciecola punicea DSM 14233
           = ACAM 611]
 gi|379328367|dbj|GAB57012.1| alternative oxidase 1a, mitochondrial [Glaciecola punicea DSM 14233
           = ACAM 611]
          Length = 217

 Score =  233 bits (595), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 109/200 (54%), Positives = 146/200 (73%)

Query: 115 AYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMV 174
           +++ +++  L KHH P   SD+ A    K LR+  D FF +RYG RA++LETVAAVPGMV
Sbjct: 8   SFKKEVADPLSKHHMPAGTSDRFAFRLTKLLRFFADHFFAKRYGHRAVVLETVAAVPGMV 67

Query: 175 GGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFN 234
            GM+ H +SLRR +     I  LLEEAENERMHLMTF+++A+P  +ER L+   QG FF 
Sbjct: 68  AGMVRHMRSLRRMKDDREAIHTLLEEAENERMHLMTFIKIAQPSLFERWLIILAQGFFFA 127

Query: 235 AYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNST 294
           ++F+ Y++S + AHR+VGY EEEA++SYTE+L  +D G +ENVPAP IA DYW LP ++ 
Sbjct: 128 SFFILYVVSGRTAHRLVGYFEEEAVYSYTEYLAAVDSGLLENVPAPDIAIDYWNLPKDAR 187

Query: 295 LKDVVLVVRADEAHHRDVNH 314
           L+DV++VVR DEA HRD NH
Sbjct: 188 LRDVIIVVRQDEAGHRDANH 207


>gi|387593301|gb|EIJ88325.1| alternative oxidase superfamily protein [Nematocida parisii ERTm3]
 gi|387595986|gb|EIJ93608.1| alternative oxidase superfamily protein [Nematocida parisii ERTm1]
          Length = 232

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 118/195 (60%), Positives = 140/195 (71%), Gaps = 1/195 (0%)

Query: 120 LSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLL 179
           + +++ KH     FSD  A  TVK LR   D+ F RRY  RA++LETVAA+PGMVGG++ 
Sbjct: 29  VDVEVGKHLPQKDFSDIFAWRTVKGLRMIADVVFYRRYVHRAIVLETVAAIPGMVGGVIR 88

Query: 180 HCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLG 239
           H KSLR  +     I+ LL EAENERMHLMT+MEVAKP   ER +V  +QGVFFNAY L 
Sbjct: 89  HLKSLRNMKDDSN-IRILLAEAENERMHLMTWMEVAKPLLIERLIVMGLQGVFFNAYLLL 147

Query: 240 YLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVV 299
           YLIS + AHR+VGYLEEEAI SYTE +KE++ G I NVPAP IA  YW LP N+TL DV 
Sbjct: 148 YLISKRTAHRLVGYLEEEAIISYTEMVKEIEAGIIPNVPAPEIAKKYWNLPSNATLLDVT 207

Query: 300 LVVRADEAHHRDVNH 314
           L +RADEA HRD NH
Sbjct: 208 LAIRADEATHRDTNH 222


>gi|197106479|ref|YP_002131856.1| Alternative oxidase [Phenylobacterium zucineum HLK1]
 gi|196479899|gb|ACG79427.1| Alternative oxidase [Phenylobacterium zucineum HLK1]
          Length = 229

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 121/192 (63%), Positives = 144/192 (75%)

Query: 123 DLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCK 182
           DL  HH P   SD++A   VK+LR+  D FF +RYG RA++LETVAAVPGMVG  L H K
Sbjct: 7   DLTVHHKPRGLSDRVAYGFVKALRFCADTFFAKRYGHRAVVLETVAAVPGMVGATLNHLK 66

Query: 183 SLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLI 242
            LRR E   GWIK L++EAENERMHLMTF+EVAKP  +ER +V A Q VF+  +F  YLI
Sbjct: 67  CLRRMEDDRGWIKTLMDEAENERMHLMTFIEVAKPTLFERFVVVAAQWVFYLFFFFLYLI 126

Query: 243 SPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVV 302
           SPK AHR+VGY EEEA+ SYT +L E+D+G  ENV AP +A  YW LP ++TL+DVV VV
Sbjct: 127 SPKTAHRVVGYFEEEAVISYTHYLAEIDEGRSENVAAPELAKRYWNLPEDATLRDVVEVV 186

Query: 303 RADEAHHRDVNH 314
           RADEAHHRDVNH
Sbjct: 187 RADEAHHRDVNH 198


>gi|77362686|dbj|BAE46391.1| alternative oxidase [Phaseolus vulgaris]
          Length = 151

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 107/151 (70%), Positives = 125/151 (82%)

Query: 162 MMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYE 221
           MMLETVAAVPGMVGGMLLH  SL +F+HSGGWIKAL+EEAENERMHLMT +E+  PKW E
Sbjct: 1   MMLETVAAVPGMVGGMLLHLXSLXKFQHSGGWIKALMEEAENERMHLMTMVELVXPKWXE 60

Query: 222 RALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPA 281
           R LV A QGVFFN +F  Y++SP  AHR+VGY EEEAI SYT++LK +++G  ENVPAPA
Sbjct: 61  RLLVLAXQGVFFNXFFALYILSPXAAHRIVGYXEEEAIXSYTQYLKXIERGAXENVPAPA 120

Query: 282 IATDYWRLPPNSTLKDVVLVVRADEAHHRDV 312
           IA DYWRLP ++  K V+ V+RADEAHHRDV
Sbjct: 121 IAIDYWRLPKDAXXKXVITVIRADEAHHRDV 151


>gi|67906549|gb|AAY82655.1| predicted alternative respiratory pathway oxidase [uncultured
           bacterium MedeBAC49C08]
          Length = 213

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 113/193 (58%), Positives = 134/193 (69%)

Query: 126 KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLR 185
           KH  P   SD+      ++LR   DLFF++RYG RA++LETVAAVPGMV GML H KSLR
Sbjct: 18  KHKYPHGLSDRSGYLITRALRIAADLFFRKRYGHRAVVLETVAAVPGMVAGMLHHFKSLR 77

Query: 186 RFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPK 245
                 G IK LL+EAENERMHLMTF+E++KP  +ER LV + Q VF   YF  Y+    
Sbjct: 78  SMTDDDGIIKELLDEAENERMHLMTFIEISKPTLFERLLVLSAQIVFGTFYFFLYVFFRG 137

Query: 246 FAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRAD 305
            AHRM+GY EEEA+ SYTEFL E+DKG IENV AP IA DYW L   +TL+DVV+ VR D
Sbjct: 138 TAHRMIGYFEEEAVTSYTEFLDEIDKGTIENVAAPKIAVDYWNLGNKATLRDVVVAVRND 197

Query: 306 EAHHRDVNHYASD 318
           EA HRD NH  +D
Sbjct: 198 EAGHRDKNHEIAD 210


>gi|74317948|ref|YP_315688.1| oxidase [Thiobacillus denitrificans ATCC 25259]
 gi|74057443|gb|AAZ97883.1| putative oxidase [Thiobacillus denitrificans ATCC 25259]
          Length = 232

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 108/195 (55%), Positives = 136/195 (69%)

Query: 124 LKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKS 183
           L  H  P    D++AL  VK ++   D FF RRYG RA++LET+AAVPGMVG  L H ++
Sbjct: 27  LDVHRPPADLRDRIALGFVKLVKAAADAFFGRRYGHRAVVLETIAAVPGMVGATLQHLRA 86

Query: 184 LRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLIS 243
           LRR +   GWI+ LLEEAENERMHLMTF+ VA+P  +ER LV   Q  F+N YF  YL S
Sbjct: 87  LRRMQGDRGWIRTLLEEAENERMHLMTFIHVAQPTQFERLLVVLAQAFFYNLYFFVYLAS 146

Query: 244 PKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVR 303
           PK AHR+ GYLEEEA+HSYTE+L  +D G   NV AP IA +YW LP ++ L++V++ VR
Sbjct: 147 PKTAHRITGYLEEEAVHSYTEYLARVDGGACTNVAAPGIAIEYWALPADARLREVIVAVR 206

Query: 304 ADEAHHRDVNHYASD 318
            DE  HR+VNH  +D
Sbjct: 207 DDEIRHREVNHAYAD 221


>gi|359786470|ref|ZP_09289605.1| Alternative oxidase [Halomonas sp. GFAJ-1]
 gi|359296320|gb|EHK60573.1| Alternative oxidase [Halomonas sp. GFAJ-1]
          Length = 212

 Score =  228 bits (580), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 113/194 (58%), Positives = 148/194 (76%)

Query: 125 KKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSL 184
           + H+ P  FSD++A   V+ +R+  D+FF  RYG RA++LETVAAVPGMVGG + H  +L
Sbjct: 15  QTHYQPRGFSDRIAYRLVRFMRFFADVFFAGRYGHRAVILETVAAVPGMVGGAIQHLHAL 74

Query: 185 RRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISP 244
           RR +   GWI+ LL+EAENERMHLMTF+EVAKP  +ER ++   QG+FFN +FL YL S 
Sbjct: 75  RRIKDDDGWIRTLLDEAENERMHLMTFIEVAKPNRFERFIIMLAQGIFFNLFFLLYLCSS 134

Query: 245 KFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRA 304
           K AHR+VGYLEEEA++SYTE+L+ +D+G  EN+PAP IA DYW LP ++ L++VV+ VRA
Sbjct: 135 KTAHRVVGYLEEEAVYSYTEYLEGIDRGEYENIPAPQIAIDYWNLPQDARLREVVVAVRA 194

Query: 305 DEAHHRDVNHYASD 318
           DEA HRD NH  +D
Sbjct: 195 DEADHRDTNHDFAD 208


>gi|378754341|gb|EHY64375.1| alternative oxidase superfamily protein [Nematocida sp. 1 ERTm2]
          Length = 232

 Score =  227 bits (579), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 114/200 (57%), Positives = 142/200 (71%), Gaps = 1/200 (0%)

Query: 120 LSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLL 179
           + +++ KH     FSD  A  TVK LR   D+ F +RY  RA++LETVAA+PGMVGG++ 
Sbjct: 29  VDVEVGKHLPQRDFSDVFAWRTVKGLRMIADVVFYKRYVHRAIVLETVAAIPGMVGGLIR 88

Query: 180 HCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLG 239
           H KSLR+ E     I+ LL EAENERMHLMT+MEVAKP   ER +V A+QGVFFNAY + 
Sbjct: 89  HLKSLRKMEDDTN-IRVLLAEAENERMHLMTWMEVAKPLLLERLIVMALQGVFFNAYLML 147

Query: 240 YLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVV 299
           Y++S K AHR+VGYLEEEAI SYTE ++E+  G I N PAP IA  YW L  ++TL DV 
Sbjct: 148 YIVSAKTAHRLVGYLEEEAIISYTEMVREIQAGIIPNTPAPEIAKKYWNLGEDATLLDVT 207

Query: 300 LVVRADEAHHRDVNHYASDI 319
           L +RADEA HRD NH  +D+
Sbjct: 208 LAIRADEATHRDTNHEIADV 227


>gi|118594227|ref|ZP_01551574.1| NADH:flavin oxidoreductase/NADH oxidase [Methylophilales bacterium
           HTCC2181]
 gi|118440005|gb|EAV46632.1| NADH:flavin oxidoreductase/NADH oxidase [Methylophilales bacterium
           HTCC2181]
          Length = 589

 Score =  224 bits (572), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 105/195 (53%), Positives = 137/195 (70%)

Query: 124 LKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKS 183
           + KH  P   SD +AL+  K LR   D FF +RYG RA++LETVAAVPGMV GM +H K 
Sbjct: 1   MSKHRTPENISDFVALFITKFLRLLADTFFSKRYGHRAVVLETVAAVPGMVAGMWIHLKC 60

Query: 184 LRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLIS 243
           LR+     GWIK LL+EAENERMHLMTF+E+AKP W+ER L+   Q +F++ YF+ Y+  
Sbjct: 61  LRKMTSDRGWIKTLLDEAENERMHLMTFIEIAKPNWFERGLILFAQALFWHFYFILYVFF 120

Query: 244 PKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVR 303
           P+ AHR+VGY EEEA+ SYT +L++++     NV AP IA +YW+L P++ L DV+ VVR
Sbjct: 121 PRTAHRLVGYFEEEAVISYTNYLEQVENDLSLNVAAPQIAINYWKLKPDARLIDVIKVVR 180

Query: 304 ADEAHHRDVNHYASD 318
            DEA H  VNH  +D
Sbjct: 181 DDEAGHAKVNHTLAD 195


>gi|388455982|ref|ZP_10138277.1| oxidase [Fluoribacter dumoffii Tex-KL]
          Length = 220

 Score =  223 bits (569), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 111/192 (57%), Positives = 139/192 (72%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 186
           H    T SDK+A   VK  R+  D FFQ+RYG RA++LETVAAVPGMVG  LLH + LR+
Sbjct: 5   HKPAKTISDKIAYGLVKFFRFFADTFFQKRYGNRAIVLETVAAVPGMVGAALLHLRCLRK 64

Query: 187 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 246
            ++  GWIK LLEEAENERMHL+TFM +AKP W+ER ++F  Q +F   Y + Y++S K 
Sbjct: 65  IKNDEGWIKTLLEEAENERMHLITFMYIAKPNWFERFIIFVAQALFVVLYLVMYVLSSKT 124

Query: 247 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 306
           AHR VGYLEEEA+ SYT +L+ELD+G IEN PAP IA  YW L  ++ L++V+L VR DE
Sbjct: 125 AHRFVGYLEEEAVISYTHYLQELDEGRIENSPAPDIAKIYWGLASDARLREVLLAVRLDE 184

Query: 307 AHHRDVNHYASD 318
             HRDVNH  +D
Sbjct: 185 EEHRDVNHELAD 196


>gi|90578977|ref|ZP_01234787.1| alternative oxidase [Photobacterium angustum S14]
 gi|90439810|gb|EAS64991.1| alternative oxidase [Photobacterium angustum S14]
          Length = 211

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 105/200 (52%), Positives = 139/200 (69%), Gaps = 1/200 (0%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 186
           H   T FS+++A    + L++  ++F+ ++Y  RA++LET+AAVPGMV GM  H K+LRR
Sbjct: 8   HRETTKFSERLAYKITQLLKYSLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRR 67

Query: 187 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 246
            +   GWIK LL EA+NERMHLM F+++AKP W ERALV   Q VF   Y + YL S K 
Sbjct: 68  MKDDEGWIKELLSEADNERMHLMIFLDIAKPSWVERALVLLGQAVFICVYSIIYLTSSKI 127

Query: 247 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 306
           AHR+VGY EEEA  SYTEFL+++D G +ENV AP IA +Y+ L  ++ L+DVVL +R DE
Sbjct: 128 AHRVVGYFEEEACKSYTEFLEKIDSGELENVAAPQIAINYYELHDDAKLRDVVLRIREDE 187

Query: 307 AHHRDVNHYASDIHYQGRQL 326
           A HRD NH  +D  YQ + L
Sbjct: 188 AKHRDRNHNFADC-YQNKDL 206


>gi|350530260|ref|ZP_08909201.1| hypothetical protein VrotD_04015 [Vibrio rotiferianus DAT722]
          Length = 211

 Score =  222 bits (565), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 101/192 (52%), Positives = 139/192 (72%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 186
           H   +  S+ +AL   K L++  ++F+ ++Y  RA++LET+AAVPGMV GM  H K+LRR
Sbjct: 8   HKKASKLSEYVALRITKLLKFTLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRR 67

Query: 187 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 246
            +   GWI+ LL+EAENERMHLM F+++AKP   ER LV   QGVF   Y + YL+S K 
Sbjct: 68  MKDDEGWIRELLDEAENERMHLMIFLDIAKPSLIERLLVLLGQGVFILVYSIIYLLSSKI 127

Query: 247 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 306
           AHR+VGY EEEA +SYTE+L+++D G +ENVPAP +A DY++LP ++ L+DV+L +R DE
Sbjct: 128 AHRVVGYFEEEACNSYTEYLEKIDSGEVENVPAPTLAIDYYKLPADAMLRDVILRIREDE 187

Query: 307 AHHRDVNHYASD 318
           A HRD NH  +D
Sbjct: 188 AGHRDRNHGFAD 199


>gi|444427732|ref|ZP_21223103.1| hypothetical protein B878_17259 [Vibrio campbellii CAIM 519 = NBRC
           15631]
 gi|444239030|gb|ELU50610.1| hypothetical protein B878_17259 [Vibrio campbellii CAIM 519 = NBRC
           15631]
          Length = 211

 Score =  221 bits (564), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 104/201 (51%), Positives = 143/201 (71%), Gaps = 3/201 (1%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 186
           H   +  S+ +AL   K L++  ++F+ ++Y  RA++LET+AAVPGMV GM  H K+LRR
Sbjct: 8   HKKASKLSEYVALRITKLLKFTLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRR 67

Query: 187 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 246
            +   GWI+ LL+EAENERMHLM F+++AKP   ER LV   QGVF   Y   YL+S K 
Sbjct: 68  MKDDEGWIRELLDEAENERMHLMIFLDIAKPSLIERLLVLLGQGVFILVYSFIYLLSSKI 127

Query: 247 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 306
           AHR+VGY EEEA +SYTE+L+++D G +ENVPAP +A DY++LP ++ L+DV+L +R DE
Sbjct: 128 AHRVVGYFEEEACNSYTEYLEKIDSGEVENVPAPTLAVDYYKLPADAMLRDVILRIREDE 187

Query: 307 AHHRDVNH-YASDIHYQGRQL 326
           A HRD NH +A D  Y+ + L
Sbjct: 188 AGHRDRNHGFADD--YEDKTL 206


>gi|209694266|ref|YP_002262194.1| hypothetical protein VSAL_I0677 [Aliivibrio salmonicida LFI1238]
 gi|208008217|emb|CAQ78362.1| putative membrane protein [Aliivibrio salmonicida LFI1238]
          Length = 212

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 102/193 (52%), Positives = 137/193 (70%)

Query: 126 KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLR 185
           KH A T  S+++A    + L++  ++F+  +Y  RA++LET+AAVPGMV GM  H K+LR
Sbjct: 8   KHKATTKMSERIAYKITQCLKFLLNIFYGSQYAKRAVILETIAAVPGMVAGMFNHLKALR 67

Query: 186 RFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPK 245
           R +   GWI+ LL EAENERMHLM F+++AKP+W ER LV   QGVF   Y   YL+S K
Sbjct: 68  RMKDDEGWIRELLNEAENERMHLMIFLDIAKPRWIERTLVLLGQGVFMVVYSFIYLLSSK 127

Query: 246 FAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRAD 305
            AHR+VGY EEEA  SYTE+L ++D G++EN  AP IA DY++LP ++ L+DV+L +R D
Sbjct: 128 VAHRVVGYFEEEACKSYTEYLSKIDNGDVENEAAPQIAIDYYQLPNDALLRDVILKIRDD 187

Query: 306 EAHHRDVNHYASD 318
           EA HRD NH  +D
Sbjct: 188 EAKHRDRNHSFAD 200


>gi|269959615|ref|ZP_06173996.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|424047885|ref|ZP_17785441.1| alternative oxidase family protein [Vibrio cholerae HENC-03]
 gi|269835673|gb|EEZ89751.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|408883195|gb|EKM21982.1| alternative oxidase family protein [Vibrio cholerae HENC-03]
          Length = 211

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 101/192 (52%), Positives = 138/192 (71%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 186
           H   +  S+ +AL   K L++  ++F+ ++Y  RA++LET+AAVPGMV GM  H K+LRR
Sbjct: 8   HKKASKLSEYIALRITKLLKFTLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRR 67

Query: 187 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 246
            +   GWI+ LL+EAENERMHLM F+++AKP   ER LV   QGVF   Y   YL+S K 
Sbjct: 68  MKDDEGWIRELLDEAENERMHLMIFLDIAKPSLVERLLVLLGQGVFIVVYSFIYLLSSKI 127

Query: 247 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 306
           AHR+VGY EEEA +SYTE+L+++D G +ENVPAP +A DY++LP ++ L+DV+L +R DE
Sbjct: 128 AHRVVGYFEEEACNSYTEYLEKIDSGEVENVPAPTLAIDYYKLPADAMLRDVILRIREDE 187

Query: 307 AHHRDVNHYASD 318
           A HRD NH  +D
Sbjct: 188 AGHRDRNHGFAD 199


>gi|424032045|ref|ZP_17771466.1| alternative oxidase family protein [Vibrio cholerae HENC-01]
 gi|408876457|gb|EKM15574.1| alternative oxidase family protein [Vibrio cholerae HENC-01]
          Length = 211

 Score =  221 bits (563), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 101/192 (52%), Positives = 138/192 (71%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 186
           H   +  S+ +AL   K L++  ++F+ ++Y  RA++LET+AAVPGMV GM  H K+LRR
Sbjct: 8   HKKASKLSEYVALRITKLLKFTLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRR 67

Query: 187 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 246
            +   GWI+ LL+EAENERMHLM F+++AKP   ER LV   QGVF   Y   YL+S K 
Sbjct: 68  MKDDEGWIRELLDEAENERMHLMIFLDIAKPSLVERLLVLLGQGVFIVVYSFIYLLSSKI 127

Query: 247 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 306
           AHR+VGY EEEA +SYTE+L+++D G +ENVPAP +A DY++LP ++ L+DV+L +R DE
Sbjct: 128 AHRVVGYFEEEACNSYTEYLEKIDSGEVENVPAPTLAIDYYKLPTDAMLRDVILRIREDE 187

Query: 307 AHHRDVNHYASD 318
           A HRD NH  +D
Sbjct: 188 AGHRDRNHGFAD 199


>gi|156973270|ref|YP_001444177.1| hypothetical protein VIBHAR_00951 [Vibrio harveyi ATCC BAA-1116]
 gi|388600478|ref|ZP_10158874.1| hypothetical protein VcamD_11319 [Vibrio campbellii DS40M4]
 gi|156524864|gb|ABU69950.1| hypothetical protein VIBHAR_00951 [Vibrio harveyi ATCC BAA-1116]
          Length = 211

 Score =  221 bits (563), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 101/192 (52%), Positives = 138/192 (71%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 186
           H   +  S+ +AL   K L++  ++F+ ++Y  RA++LET+AAVPGMV GM  H K+LRR
Sbjct: 8   HKKASKLSEYVALRITKLLKFTLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRR 67

Query: 187 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 246
            +   GWI+ LL+EAENERMHLM F+++AKP   ER LV   QGVF   Y   YL+S K 
Sbjct: 68  MKDDEGWIRELLDEAENERMHLMIFLDIAKPSLIERLLVLLGQGVFILVYSFIYLLSSKI 127

Query: 247 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 306
           AHR+VGY EEEA +SYTE+L+++D G +ENVPAP +A DY++LP ++ L+DV+L +R DE
Sbjct: 128 AHRVVGYFEEEACNSYTEYLEKIDSGEVENVPAPTLAVDYYKLPADAMLRDVILRIREDE 187

Query: 307 AHHRDVNHYASD 318
           A HRD NH  +D
Sbjct: 188 AGHRDRNHGFAD 199


>gi|424037571|ref|ZP_17776332.1| alternative oxidase family protein [Vibrio cholerae HENC-02]
 gi|408895390|gb|EKM31796.1| alternative oxidase family protein [Vibrio cholerae HENC-02]
          Length = 211

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 101/192 (52%), Positives = 138/192 (71%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 186
           H   +  S+ +AL   K L++  ++F+ ++Y  RA++LET+AAVPGMV GM  H K+LRR
Sbjct: 8   HKKASKLSEYVALRITKLLKFTLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRR 67

Query: 187 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 246
            +   GWI+ LL+EAENERMHLM F+++AKP   ER LV   QGVF   Y   YL+S K 
Sbjct: 68  MKDDEGWIRELLDEAENERMHLMIFLDIAKPSLVERLLVLLGQGVFIVVYSFIYLLSSKI 127

Query: 247 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 306
           AHR+VGY EEEA +SYTE+L+++D G +ENVPAP +A DY++LP ++ L+DV+L +R DE
Sbjct: 128 AHRVVGYFEEEACNSYTEYLEKIDSGEVENVPAPTLAIDYYKLPTDAMLRDVILRIREDE 187

Query: 307 AHHRDVNHYASD 318
           A HRD NH  +D
Sbjct: 188 AGHRDRNHGFAD 199


>gi|119947000|ref|YP_944680.1| alternative oxidase [Psychromonas ingrahamii 37]
 gi|119865604|gb|ABM05081.1| alternative oxidase [Psychromonas ingrahamii 37]
          Length = 211

 Score =  220 bits (561), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 101/192 (52%), Positives = 134/192 (69%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 186
           H  P   S+ +A    +SL++  +LF+ ++Y  RA++LET+AAVPGMV GML H K+LRR
Sbjct: 8   HQKPNKVSEYIAYKITQSLKFMLNLFYGKKYAKRAVILETIAAVPGMVAGMLNHLKALRR 67

Query: 187 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 246
                GWI+ LL+EAENERMHLM F+++AKP W ER LV   QG+F   Y   Y++S K 
Sbjct: 68  MRDDQGWIRELLDEAENERMHLMIFLDIAKPTWIERTLVLLGQGIFLIIYTFLYILSSKT 127

Query: 247 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 306
            HR+VGY EEEA  SY+EFL+++D G +ENVPAP IA DY+ L  ++ L+DVVL +R DE
Sbjct: 128 GHRVVGYFEEEACKSYSEFLQKIDAGEVENVPAPKIAKDYYALDDDACLRDVVLCIREDE 187

Query: 307 AHHRDVNHYASD 318
             HRD NH  +D
Sbjct: 188 GKHRDRNHEFAD 199


>gi|119713421|gb|ABL97483.1| possible alternative respiratory pathway oxidase [uncultured marine
           bacterium HF130_81H07]
          Length = 213

 Score =  220 bits (560), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 104/196 (53%), Positives = 135/196 (68%)

Query: 123 DLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCK 182
           ++  H  P + SD  AL   K LR   D  F++RYG RA++LETVAAVPGMV G++ H +
Sbjct: 13  EIAGHKLPISISDSFALGITKFLRNSADFLFKKRYGHRAVVLETVAAVPGMVAGVVHHLR 72

Query: 183 SLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLI 242
           SLRR +   G I+ +LEEAENERMHLMTF+E+A+P  +ER L+F  Q  F   Y   Y+ 
Sbjct: 73  SLRRMQDDNGLIREMLEEAENERMHLMTFIEIAQPSTFERFLIFLAQIGFGTFYTFLYIF 132

Query: 243 SPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVV 302
             + AHRM+GY EEEA+ SYTE+L E+DKG IEN  AP IA +YW L  +++L+DVV+ V
Sbjct: 133 FNRTAHRMIGYFEEEAVVSYTEYLDEIDKGQIENTQAPEIAINYWNLAKDASLRDVVIAV 192

Query: 303 RADEAHHRDVNHYASD 318
           R DEA HRD NH  +D
Sbjct: 193 RNDEAGHRDKNHLIAD 208


>gi|59711185|ref|YP_203961.1| alternative oxidase 1 [Vibrio fischeri ES114]
 gi|59479286|gb|AAW85073.1| alternative oxidase 1 [Vibrio fischeri ES114]
          Length = 211

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 101/193 (52%), Positives = 135/193 (69%)

Query: 126 KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLR 185
           KH A    S+K+A    + L++  ++F+  +Y  RA++LET+AAVPGMV GM  H K+LR
Sbjct: 7   KHKATNKISEKIAYKITQCLKFLLNIFYGSKYAKRAVILETIAAVPGMVAGMFNHLKALR 66

Query: 186 RFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPK 245
           R +   GWI+ LL EAENERMHLM F+++AKP+W ER LV   Q VF   Y   YL+S K
Sbjct: 67  RMKDDQGWIQELLSEAENERMHLMIFLDIAKPRWIERLLVLLGQAVFIVVYSFIYLLSSK 126

Query: 246 FAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRAD 305
            AHR+VGY EEEA  SYTE+L ++D+G +EN  AP IA DY++LP ++ L+DV+L +R D
Sbjct: 127 IAHRVVGYFEEEACKSYTEYLAKIDEGTVENEAAPQIAIDYYQLPSDAMLRDVILKIRND 186

Query: 306 EAHHRDVNHYASD 318
           EA HRD NH  +D
Sbjct: 187 EAKHRDRNHSFAD 199


>gi|89072986|ref|ZP_01159533.1| alternative oxidase [Photobacterium sp. SKA34]
 gi|89051204|gb|EAR56660.1| alternative oxidase [Photobacterium sp. SKA34]
          Length = 211

 Score =  219 bits (558), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 103/200 (51%), Positives = 138/200 (69%), Gaps = 1/200 (0%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 186
           H     FS+++A    + L++  ++F+ ++Y  RA++LET+AAVPGMV GM  H K+LRR
Sbjct: 8   HRETNKFSERLAYKITQLLKYSLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRR 67

Query: 187 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 246
            +   GWIK LL EA+NERMHLM F+++AKP W ER LV   Q VF   Y + YL S K 
Sbjct: 68  MKDDEGWIKELLSEADNERMHLMIFLDIAKPSWVERGLVLLGQAVFICVYSIIYLTSSKI 127

Query: 247 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 306
           AHR+VGY EEEA  SYTEFL+++D G +ENV AP IA +Y+ L  ++ L+DVVL +R DE
Sbjct: 128 AHRVVGYFEEEACKSYTEFLEKIDSGELENVAAPQIAINYYELHDDAKLRDVVLRIREDE 187

Query: 307 AHHRDVNHYASDIHYQGRQL 326
           A HRD NH  +D  YQ ++L
Sbjct: 188 AKHRDRNHNFADC-YQNKEL 206


>gi|197334925|ref|YP_002155335.1| alternative oxidase 2 [Vibrio fischeri MJ11]
 gi|197316415|gb|ACH65862.1| alternative oxidase 2 [Vibrio fischeri MJ11]
          Length = 211

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 101/193 (52%), Positives = 135/193 (69%)

Query: 126 KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLR 185
           KH A    S+K+A    + L++  ++F+  +Y  RA++LET+AAVPGMV GM  H K+LR
Sbjct: 7   KHKATNKISEKIAYKITQCLKFLLNIFYGSKYAKRAVILETIAAVPGMVAGMFNHLKALR 66

Query: 186 RFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPK 245
           R +   GWI+ LL EAENERMHLM F+++AKP+W ER LV   Q VF   Y   YL+S K
Sbjct: 67  RMKDDQGWIQELLSEAENERMHLMIFLDIAKPRWIERLLVLLGQAVFIVVYSFIYLLSSK 126

Query: 246 FAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRAD 305
            AHR+VGY EEEA  SYTE+L ++D+G +EN  AP IA DY++LP ++ L+DV+L +R D
Sbjct: 127 IAHRVVGYFEEEACKSYTEYLAKIDEGAVENEAAPQIAIDYYQLPSDAMLRDVILKIRND 186

Query: 306 EAHHRDVNHYASD 318
           EA HRD NH  +D
Sbjct: 187 EAKHRDRNHSFAD 199


>gi|222631917|gb|EEE64049.1| hypothetical protein OsJ_18878 [Oryza sativa Japonica Group]
          Length = 131

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 99/131 (75%), Positives = 116/131 (88%)

Query: 206 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 265
           MHLMTFMEVAKP+WYER LV AVQ VFFNAYFLGYL+SPK AHR+VGYLE+EAIHSYT++
Sbjct: 1   MHLMTFMEVAKPRWYERTLVLAVQRVFFNAYFLGYLLSPKLAHRVVGYLEKEAIHSYTKY 60

Query: 266 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 325
           LK+ + G IENVPA  IA DYWRLP  +TLKDVV+VVRA+EAHHRDVNH+ASD+H+QG  
Sbjct: 61  LKDNEAGKIENVPASPIAIDYWRLPAGATLKDVVVVVRANEAHHRDVNHFASDVHFQGMD 120

Query: 326 LRESPAPLGYH 336
           L+++PAPL YH
Sbjct: 121 LKDTPAPLDYH 131


>gi|281211621|gb|EFA85783.1| alternative oxidase [Polysphondylium pallidum PN500]
          Length = 317

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 107/192 (55%), Positives = 135/192 (70%), Gaps = 1/192 (0%)

Query: 128 HAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRF 187
           H P   SD +A + V  LR  ++L F+ +Y   A +LETVAAVPGMV GML H K+LRR 
Sbjct: 86  HQPQNISDNVARFAVWLLRKASNLVFKEKYIHYACVLETVAAVPGMVAGMLQHLKTLRRM 145

Query: 188 EHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFA 247
           EH+  WIK LL+EAENERMHLMTFME++ P   ER L+   QG ++NA+ L YLISPK A
Sbjct: 146 EHNN-WIKILLDEAENERMHLMTFMEISMPTKLERNLITLAQGAYWNAFLLFYLISPKTA 204

Query: 248 HRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEA 307
           HR  GYLEEEA+ +YT  L +LD G +ENV AP IA +YW LP ++ L+DV+LV+R DE 
Sbjct: 205 HRFTGYLEEEAVITYTNMLHDLDAGKVENVEAPQIAREYWGLPDDAKLRDVILVIRQDEV 264

Query: 308 HHRDVNHYASDI 319
            H  VNH  S++
Sbjct: 265 DHGHVNHQLSNM 276


>gi|163803376|ref|ZP_02197252.1| hypothetical protein 1103602000422_AND4_18992 [Vibrio sp. AND4]
 gi|159172838|gb|EDP57680.1| hypothetical protein AND4_18992 [Vibrio sp. AND4]
          Length = 211

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 102/200 (51%), Positives = 142/200 (71%), Gaps = 1/200 (0%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 186
           H   +  S+ +AL   + L++  ++F+ ++Y  RA++LET+AAVPGMV GM  H K+LRR
Sbjct: 8   HKKASKLSEYIALRITRLLKFTLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRR 67

Query: 187 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 246
            +   GWI+ LL+EAENERMHLM F+++AKP + ER LV   QG F   Y L YL+S K 
Sbjct: 68  MKDDEGWIRELLDEAENERMHLMIFLDIAKPSFVERLLVLLGQGAFILVYSLIYLLSSKI 127

Query: 247 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 306
           AHR+VGY EEEA +SYTE+L+++D G +ENVPAP +A  Y++LP ++ L+DV+L +R DE
Sbjct: 128 AHRVVGYFEEEACNSYTEYLEKIDSGEVENVPAPTLAIGYYKLPADAMLRDVILRIREDE 187

Query: 307 AHHRDVNHYASDIHYQGRQL 326
           A HRD NH  +D  Y+ R L
Sbjct: 188 AGHRDRNHGFADA-YEDRAL 206


>gi|58258419|ref|XP_566622.1| alternative oxidase 1 [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134106269|ref|XP_778145.1| hypothetical protein CNBA1450 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50260848|gb|EAL23498.1| hypothetical protein CNBA1450 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57222759|gb|AAW40803.1| alternative oxidase 1 [Cryptococcus neoformans var. neoformans
           JEC21]
          Length = 401

 Score =  217 bits (553), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 133/353 (37%), Positives = 186/353 (52%), Gaps = 42/353 (11%)

Query: 1   MMYRGGVRLFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPIL-GSRNRSTLALGGEK 59
           ++ R G    ST+ A   S      + +  ++    +   +A I  G+ NR++L+L    
Sbjct: 4   ILLRSGNVARSTILAGGPSIGGPMTLRSAYSSTRTFSIFTKAKIQSGNMNRASLSLRPSV 63

Query: 60  EQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEAD 119
            +  +      G+   G  G         Y    +  V  D  +   W  F P    E +
Sbjct: 64  REAEKSQGPVVGSEGKGVEGPH-------YQDQASHNVLSDASTTGAWTMFNPIYT-EKE 115

Query: 120 LSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFF-------------------------- 153
           L+       AP TF DK A  TVK LR   DL                            
Sbjct: 116 LNTVQVVGRAPVTFGDKAAHKTVKFLRKCFDLLTGYTPYEVPASVLAQKPIPIAELRSKG 175

Query: 154 ----QRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 209
                +++  R ++LE++A VPGMVGG L H +S+R  +  GGWI +LLEEAENERMHL+
Sbjct: 176 KLLSDQKWLFRIILLESIAGVPGMVGGTLRHLRSMRLLKRDGGWIHSLLEEAENERMHLL 235

Query: 210 TFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKEL 269
           TFM +A+P  + RALV A QGVF+NA+FL YLISP+ AHR VG LEEEA+ +YT  + ++
Sbjct: 236 TFMTIAQPGIFTRALVLAAQGVFYNAFFLTYLISPRIAHRFVGALEEEAVRTYTHCISDM 295

Query: 270 DKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
           + G I   +++PAPAIA DYWRLP +S+L DV+  VRADEA HR VNH  +++
Sbjct: 296 EAGLIPEWKDMPAPAIAIDYWRLPASSSLLDVIRAVRADEATHRFVNHSLANL 348


>gi|90414281|ref|ZP_01222260.1| alternative oxidase [Photobacterium profundum 3TCK]
 gi|90324619|gb|EAS41166.1| alternative oxidase [Photobacterium profundum 3TCK]
          Length = 211

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 99/193 (51%), Positives = 135/193 (69%)

Query: 126 KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLR 185
           KH   +  S+ +A    + L++  ++F+  +Y  RA++LET+AAVPGMV GM  H K+LR
Sbjct: 7   KHRTASKLSEHVAYKITQCLKFLLNIFYGTKYAKRAVILETIAAVPGMVAGMFNHLKALR 66

Query: 186 RFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPK 245
           R +   GWI+ LL+EAENERMHLM F+ +AKP W ERALV   QG F   Y L YL+S K
Sbjct: 67  RMKDDEGWIRELLDEAENERMHLMIFLNIAKPSWVERALVLIGQGAFIVVYSLIYLLSSK 126

Query: 246 FAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRAD 305
            AHR+VGY EEEA  SYTE+L ++D G +ENV AP IA +Y++LP ++ L+DV++ +R D
Sbjct: 127 IAHRVVGYFEEEACKSYTEYLSKIDAGEVENVAAPKIAIEYYQLPLDAMLRDVIVKIRND 186

Query: 306 EAHHRDVNHYASD 318
           EA H D NH+ +D
Sbjct: 187 EAKHHDQNHFFAD 199


>gi|330446299|ref|ZP_08309951.1| alternative oxidase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328490490|dbj|GAA04448.1| alternative oxidase family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 211

 Score =  216 bits (549), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 102/200 (51%), Positives = 136/200 (68%), Gaps = 1/200 (0%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 186
           H      S+++A    + L++  ++F+ ++Y  RA++LET+AAVPGMV GM  H K+LRR
Sbjct: 8   HRETNKISERLAYKITQLLKFSLNIFYGKKYAKRAVILETIAAVPGMVAGMFNHLKALRR 67

Query: 187 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 246
            +   GWIK LL EA+NERMHLM F+++AKP W ER LV   Q VF   Y + YL S K 
Sbjct: 68  MKDDEGWIKELLSEADNERMHLMIFLDIAKPSWIERGLVLLGQAVFICVYSIIYLCSSKI 127

Query: 247 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 306
           AHR+VGY EEEA  SYTEFL+++D G +ENV AP IA  Y++L  ++ L+DVVL +R DE
Sbjct: 128 AHRVVGYFEEEACKSYTEFLEKIDSGKLENVAAPDIAIKYYQLQDDARLRDVVLRIREDE 187

Query: 307 AHHRDVNHYASDIHYQGRQL 326
           A HRD NH  +D  YQ + L
Sbjct: 188 AKHRDRNHNFADC-YQNKDL 206


>gi|222635049|gb|EEE65181.1| hypothetical protein OsJ_20292 [Oryza sativa Japonica Group]
          Length = 130

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 98/131 (74%), Positives = 114/131 (87%), Gaps = 1/131 (0%)

Query: 206 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 265
           MHLMTFME  KP+WYER LV AVQ VFFNAYFLGYL+SPK AHR+VGYLEEEAIH YTE+
Sbjct: 1   MHLMTFMEAVKPRWYERTLVLAVQRVFFNAYFLGYLLSPKLAHRVVGYLEEEAIHPYTEY 60

Query: 266 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 325
           LK+++ G IENVPAP IA DYWRLP  +TLKDVV +VRADEAHHRDVNH+ASD+H++G  
Sbjct: 61  LKDIEAGKIENVPAPPIAIDYWRLPAGATLKDVV-IVRADEAHHRDVNHFASDVHFRGMD 119

Query: 326 LRESPAPLGYH 336
           L+++PAPL YH
Sbjct: 120 LKDTPAPLDYH 130


>gi|429965955|gb|ELA47952.1| hypothetical protein VCUG_00535 [Vavraia culicis 'floridensis']
          Length = 318

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 110/200 (55%), Positives = 135/200 (67%), Gaps = 2/200 (1%)

Query: 121 SIDLK--KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGML 178
           SID +  KH  P +FSD  A   VK LR   DL+FQ+ Y  R ++LETVAA+PGMVGGM 
Sbjct: 108 SIDYESGKHFVPQSFSDTFAFLIVKGLRAFADLYFQKDYLRRVVVLETVAAIPGMVGGMF 167

Query: 179 LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 238
            H  SLR  E +G  IK L+ EAENER HL+TF+ V KP   +R L+   Q +FFN Y +
Sbjct: 168 RHLYSLRNLEDNGEAIKKLVLEAENERQHLLTFLAVLKPNILDRMLIRLGQFLFFNGYMV 227

Query: 239 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDV 298
            Y ++PK AHR VGYLEEEA+ SY  F +E+  G+I+NV AP I+ DYW LP  +TL DV
Sbjct: 228 FYFMTPKTAHRFVGYLEEEAVRSYDAFEEEILVGHIKNVDAPRISKDYWNLPEEATLVDV 287

Query: 299 VLVVRADEAHHRDVNHYASD 318
           V  VRADEA HRDVNH  +D
Sbjct: 288 VRAVRADEAEHRDVNHRMAD 307


>gi|449081284|sp|Q8NKE2.2|AOX_CRYNH RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|405117524|gb|AFR92299.1| alternative oxidase [Cryptococcus neoformans var. grubii H99]
          Length = 401

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 120/270 (44%), Positives = 156/270 (57%), Gaps = 42/270 (15%)

Query: 91  GVEAP--------KVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTV 142
           GVE P         V  D  +   W  F P    E +L+       AP TF DK A  TV
Sbjct: 80  GVEGPHYQDQVSHNVLSDASTTGAWTMFNPIYT-EKELNTVQVVGRAPVTFGDKAAHRTV 138

Query: 143 KSLRWPTDLFF------------------------------QRRYGCRAMMLETVAAVPG 172
           K LR   DL                                 +++  R ++LE++A VPG
Sbjct: 139 KFLRKCFDLLTGYTPYEVPASVLAQKPIPIAELRSKGKLLSDQKWLFRIILLESIAGVPG 198

Query: 173 MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVF 232
           MVGG L H +S+R  +  GGWI +LLEEAENERMHL+TFM +A+P  + RALV A QGVF
Sbjct: 199 MVGGTLRHLRSMRLLKRDGGWIHSLLEEAENERMHLLTFMTIAQPGIFTRALVLAAQGVF 258

Query: 233 FNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRL 289
           +NA+FL YLISP+ AHR VG LEEEA+ +YT  + +++ G I   +++PAPAIA DYWRL
Sbjct: 259 YNAFFLTYLISPRIAHRFVGALEEEAVRTYTHCISDMEAGLIPEWKDMPAPAIAIDYWRL 318

Query: 290 PPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
           P +S+L DV+  VRADEA HR VNH  +++
Sbjct: 319 PASSSLLDVIRAVRADEATHRFVNHSLANL 348


>gi|330790445|ref|XP_003283307.1| hypothetical protein DICPUDRAFT_44721 [Dictyostelium purpureum]
 gi|325086732|gb|EGC40117.1| hypothetical protein DICPUDRAFT_44721 [Dictyostelium purpureum]
          Length = 320

 Score =  214 bits (546), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 98/189 (51%), Positives = 137/189 (72%), Gaps = 1/189 (0%)

Query: 130 PTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEH 189
           P T  D  A  TV+ LR  ++LFF+ +Y   A++LET+A+VPG+ GG +LH ++LR  E 
Sbjct: 83  PKTIGDHFAKNTVQLLRKVSNLFFREKYIHYAIVLETIASVPGLCGGAMLHLRALRTME- 141

Query: 190 SGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHR 249
           S  WIKAL++E+ENER+HLM+F+E+ KP   ER +V A Q VF+N Y +GY ISPK  HR
Sbjct: 142 SNNWIKALMDESENERIHLMSFIELTKPTLIERTMVAAAQAVFWNLYLVGYAISPKIMHR 201

Query: 250 MVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHH 309
           +VGYLE EA+ +YT FL ++D G +EN+PA  +A +YW LP ++TL+D++LV+R DE  H
Sbjct: 202 VVGYLEHEAVKTYTNFLADIDAGKVENIPASKLAIEYWGLPADATLRDMILVIREDEMDH 261

Query: 310 RDVNHYASD 318
           R VNH  S+
Sbjct: 262 RLVNHEISN 270


>gi|294083747|ref|YP_003550504.1| alternative oxidase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663319|gb|ADE38420.1| Alternative oxidase [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 200

 Score =  214 bits (545), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 103/199 (51%), Positives = 133/199 (66%), Gaps = 1/199 (0%)

Query: 126 KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLR 185
           +H AP+ FSD+ AL      RW  D FF +RYG RA++LETVA VPGMV GM  H  SLR
Sbjct: 2   QHRAPSDFSDRFALAVTMFFRWFADTFFAKRYGHRAVVLETVAGVPGMVAGMWNHLSSLR 61

Query: 186 RFEHS-GGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISP 244
           + +    GWIK LL+EAENERMHLM F+E+AKP   ERA++   Q  F++ YF+ Y+  P
Sbjct: 62  KMKQDEKGWIKTLLDEAENERMHLMIFIEIAKPNALERAIILLAQFFFWHFYFILYVFFP 121

Query: 245 KFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRA 304
           K AHRMVGY EE+A+ SYTE+L ++D     N+ AP IA DY+ LP  + L+DV++ VR 
Sbjct: 122 KTAHRMVGYFEEQAVISYTEYLDQIDSDKATNIDAPDIAKDYYGLPKTAKLRDVIIAVRQ 181

Query: 305 DEAHHRDVNHYASDIHYQG 323
           DE  H D NH  +D   +G
Sbjct: 182 DEQGHSDTNHEMADALAKG 200


>gi|218197681|gb|EEC80108.1| hypothetical protein OsI_21855 [Oryza sativa Indica Group]
          Length = 130

 Score =  214 bits (544), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 97/131 (74%), Positives = 114/131 (87%), Gaps = 1/131 (0%)

Query: 206 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 265
           MHLMTFME  KP+WYER LV AVQ VFFNAYFLGYL+SPK AHR+VGYLEEEAIH YTE+
Sbjct: 1   MHLMTFMEAVKPRWYERTLVLAVQRVFFNAYFLGYLLSPKLAHRVVGYLEEEAIHPYTEY 60

Query: 266 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 325
           LK+++ G IENVPAP IA DYW+LP  +TLKDVV +VRADEAHHRDVNH+ASD+H++G  
Sbjct: 61  LKDIEAGKIENVPAPPIAIDYWQLPAGATLKDVV-IVRADEAHHRDVNHFASDVHFRGMD 119

Query: 326 LRESPAPLGYH 336
           L+++PAPL YH
Sbjct: 120 LKDTPAPLDYH 130


>gi|208436656|gb|ACI28874.1| mitochondrial alternative oxidase 2, partial [Vitis vinifera]
          Length = 124

 Score =  213 bits (543), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 96/123 (78%), Positives = 110/123 (89%)

Query: 187 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 246
           FE SGGWIKALLEEAENERMHLMT +E+ +PKWYER LV  VQGVFFNA+F+ YL+SPK 
Sbjct: 1   FEQSGGWIKALLEEAENERMHLMTMVELVQPKWYERVLVLTVQGVFFNAFFVLYLLSPKL 60

Query: 247 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 306
           AHR+VGYLEEEAIHSYTE+LK++D G IENVPAPAIA DYWRLP ++TLKDV+ V+RADE
Sbjct: 61  AHRVVGYLEEEAIHSYTEYLKDIDSGKIENVPAPAIAIDYWRLPKDATLKDVITVIRADE 120

Query: 307 AHH 309
           AHH
Sbjct: 121 AHH 123


>gi|321251112|ref|XP_003191963.1| alternative oxidase 1 [Cryptococcus gattii WM276]
 gi|317458431|gb|ADV20176.1| Alternative oxidase 1 [Cryptococcus gattii WM276]
          Length = 400

 Score =  213 bits (543), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 119/270 (44%), Positives = 155/270 (57%), Gaps = 42/270 (15%)

Query: 91  GVEAP--------KVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTV 142
           GVE P         V  D  +   W  F P    + +L+       AP TF DK A  TV
Sbjct: 79  GVEGPHYQDQVSHNVLSDASTTGAWTMFNPIYT-DKELNTVQVVGRAPVTFGDKAAHKTV 137

Query: 143 KSLRWPTD------------------------------LFFQRRYGCRAMMLETVAAVPG 172
           K LR   D                              L   +++  R ++LE++A VPG
Sbjct: 138 KFLRKCFDFITGYTPYEIPASVLAQKPIPIAELRSKGKLLSDQKWLFRIILLESIAGVPG 197

Query: 173 MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVF 232
           MVGG L H +S+R  +  GGWI +LLEEAENERMHL+TFM +A+P  + RALV A QGVF
Sbjct: 198 MVGGTLRHLRSMRLLKRDGGWIHSLLEEAENERMHLLTFMTIAQPSIFTRALVLAAQGVF 257

Query: 233 FNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRL 289
           +NA+FL YLISP+ AHR VG LEEEA+ +YT  + +++ G I   +++PAPAIA DYWRL
Sbjct: 258 YNAFFLTYLISPRIAHRFVGALEEEAVRTYTHCISDMEAGLIPEWKDMPAPAIAIDYWRL 317

Query: 290 PPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
           P  S+L DV+  VRADEA HR VNH  +++
Sbjct: 318 PATSSLLDVIRAVRADEATHRFVNHSLANL 347


>gi|378548285|sp|D5JAJ1.1|AOX_TRAHO RecName: Full=Ubiquinol oxidase; AltName: Full=Alternative oxidase
 gi|293338884|gb|ADE43749.1| alternative oxidase [Trachipleistophora hominis]
 gi|440492337|gb|ELQ74912.1| putative Alternative oxidase domain (AOX) protein
           [Trachipleistophora hominis]
          Length = 318

 Score =  213 bits (542), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 105/193 (54%), Positives = 130/193 (67%)

Query: 126 KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLR 185
           KH  P +FSD  A   VK LR   DL+FQ+ Y  R ++LETVAA+PGMVGGM  H  SLR
Sbjct: 115 KHFVPQSFSDTFAYLIVKGLRAFADLYFQKDYVRRVVVLETVAAIPGMVGGMFRHLYSLR 174

Query: 186 RFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPK 245
             E +G  IK L+ EAENER HL+TF+ V KP   +R L+   Q +FFN Y + Y ++P+
Sbjct: 175 NLEDNGEAIKKLVLEAENERQHLLTFLAVLKPNVLDRMLIKLGQFLFFNGYMVFYFVAPR 234

Query: 246 FAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRAD 305
            AHR VGYLEEEA+ SY  F +E+  G+I+NV AP I+ DYW LP  + L DVV  VRAD
Sbjct: 235 TAHRFVGYLEEEAVRSYDAFEEEILLGHIKNVEAPRISKDYWNLPEEAMLIDVVRAVRAD 294

Query: 306 EAHHRDVNHYASD 318
           EA HRDVNH  +D
Sbjct: 295 EAEHRDVNHKMAD 307


>gi|38345481|emb|CAE01695.2| OSJNBa0010H02.19 [Oryza sativa Japonica Group]
          Length = 125

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 96/125 (76%), Positives = 111/125 (88%)

Query: 212 MEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDK 271
           MEVAKP+WYER LV AVQ VFFNAYFLGYL+SPK AHR+VGYLEEEAIHSYTE+LK+++ 
Sbjct: 1   MEVAKPRWYERTLVLAVQRVFFNAYFLGYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIEA 60

Query: 272 GNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPA 331
           G IENVPAP IA DYWRLP  +TLKDVV+VVRADEAHHRDVNH+ASD+H+Q   L+++PA
Sbjct: 61  GKIENVPAPPIAIDYWRLPAGATLKDVVVVVRADEAHHRDVNHFASDVHFQRMDLKDTPA 120

Query: 332 PLGYH 336
           PL YH
Sbjct: 121 PLDYH 125


>gi|149925323|ref|ZP_01913587.1| Alternative oxidase [Limnobacter sp. MED105]
 gi|149825440|gb|EDM84648.1| Alternative oxidase [Limnobacter sp. MED105]
          Length = 204

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/190 (55%), Positives = 132/190 (69%), Gaps = 1/190 (0%)

Query: 130 PTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEH 189
           P  FSDK A       RW  D FF +RYG RA++LETVA VPGMV GM +H KSLR+ + 
Sbjct: 10  PKDFSDKFAKSLTMFFRWFADTFFAKRYGHRAVILETVAGVPGMVAGMWIHLKSLRKMKT 69

Query: 190 S-GGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAH 248
             G  I+ LLEEAENERMHLM F+E+AKP   ER LV   Q VF++ YF+ Y+  PK AH
Sbjct: 70  GYGPTIRTLLEEAENERMHLMIFIEIAKPSVGERLLVLFAQLVFWHFYFILYVFFPKTAH 129

Query: 249 RMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAH 308
           RMVGY E +A+ SYT++L E+D G IEN+ AP IA DY++LP ++ L+DVV+ VR DE  
Sbjct: 130 RMVGYFENQAVVSYTDYLAEIDAGRIENIAAPKIAIDYYKLPADAKLRDVVIAVRNDEQG 189

Query: 309 HRDVNHYASD 318
           H DVNH  +D
Sbjct: 190 HADVNHEMAD 199


>gi|20467245|gb|AAM22475.1|AF502293_1 alternative oxidase [Cryptococcus neoformans var. grubii]
          Length = 401

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 115/256 (44%), Positives = 151/256 (58%), Gaps = 34/256 (13%)

Query: 97  VNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFF--- 153
           V  D  +   W    P    E +L+       AP TF DK A  TVK LR   DL     
Sbjct: 94  VLSDASTTGAWTMLNPIYT-EKELNTVQVVGRAPVTFGDKAAHRTVKFLRKCFDLLTGYT 152

Query: 154 ---------------------------QRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 186
                                       +++  R ++LE++A VPGMVGG L H +S+R 
Sbjct: 153 PYEVPASVLAQKPIPIAELRSKGKLLSDQKWLFRIILLESIAGVPGMVGGTLRHLRSMRL 212

Query: 187 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 246
            +  GGWI +LLEEAENERMHL+TFM +A+P  + RALV A QGVF+NA+FL YLISP+ 
Sbjct: 213 LKRDGGWIHSLLEEAENERMHLLTFMTIAQPGIFTRALVLAAQGVFYNAFFLTYLISPRI 272

Query: 247 AHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVR 303
           AHR VG LEEEA+ +YT  + +++ G I   +++PAPAIA DYWRLP +S+L DV+  VR
Sbjct: 273 AHRFVGALEEEAVRTYTHCISDMEAGLIPEWKDMPAPAIAIDYWRLPASSSLLDVIRAVR 332

Query: 304 ADEAHHRDVNHYASDI 319
           ADEA HR VNH  +++
Sbjct: 333 ADEATHRFVNHSLANL 348


>gi|283444935|gb|ADB20396.1| mitochondrial alternative oxidase 1b [Hypericum perforatum]
 gi|283444937|gb|ADB20397.1| mitochondrial alternative oxidase 1b [Hypericum perforatum]
          Length = 106

 Score =  210 bits (534), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 94/106 (88%), Positives = 100/106 (94%)

Query: 105 WKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMML 164
           W W CFRPWEAY+ ++SIDLKKHHAPTTF DK+A WTVKSLRWPTD+FFQRRYGCRAMML
Sbjct: 1   WTWICFRPWEAYQPNMSIDLKKHHAPTTFLDKLAFWTVKSLRWPTDIFFQRRYGCRAMML 60

Query: 165 ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMT 210
           ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIK LL+EAENERMHLMT
Sbjct: 61  ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKTLLDEAENERMHLMT 106


>gi|222612438|gb|EEE50570.1| hypothetical protein OsJ_30719 [Oryza sativa Japonica Group]
          Length = 131

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 95/131 (72%), Positives = 112/131 (85%)

Query: 206 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 265
           MHLMTFMEVAK +WYER LV A Q VFFNAYFL YL+SPK AHR++GYLEEEAI SYTE+
Sbjct: 1   MHLMTFMEVAKLRWYERTLVLADQRVFFNAYFLSYLLSPKLAHRVIGYLEEEAIDSYTEY 60

Query: 266 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 325
           LK+++ G IENVP P IA DYWRLP ++TLKDVV+VV ADEAHHRDVNH+ASD+H+QG  
Sbjct: 61  LKDIEAGKIENVPTPPIAIDYWRLPADATLKDVVVVVCADEAHHRDVNHFASDVHFQGMD 120

Query: 326 LRESPAPLGYH 336
           L+++PA L YH
Sbjct: 121 LKDTPALLDYH 131


>gi|428185051|gb|EKX53904.1| hypothetical protein GUITHDRAFT_63810 [Guillardia theta CCMP2712]
          Length = 246

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 102/203 (50%), Positives = 134/203 (66%), Gaps = 12/203 (5%)

Query: 124 LKKHHAPT-TFSDKMALWTVKSLRWPTDLFFQRRYG--------CRAMMLETVAAVPGMV 174
           ++K H P   F D++A   VK  RW  D F   R+G         R   LETVAAVPGM 
Sbjct: 14  VRKTHRPMEDFVDRLAFSGVKLCRWSFDTFSGFRFGELTESKVISRICFLETVAAVPGMT 73

Query: 175 GGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFN 234
            GML H +SLRR +   GWI  LLEEAENERMHL+TF+++ KP +  R  V A QG+F N
Sbjct: 74  AGMLRHLRSLRRMDRDHGWIHTLLEEAENERMHLLTFVKLKKPSYAFRTAVVATQGIFMN 133

Query: 235 AYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPP 291
            +F+ Y+ SP+F HR VGYLEEEA+ +YT+ + E+D G +   +  PAP IA DYW L P
Sbjct: 134 LFFVAYIASPRFCHRFVGYLEEEAVKTYTDIIHEIDNGKLKHWQTQPAPQIAIDYWHLRP 193

Query: 292 NSTLKDVVLVVRADEAHHRDVNH 314
           +++++D++L VR DEA+HRDVNH
Sbjct: 194 DASMRDLMLAVRMDEANHRDVNH 216


>gi|428185053|gb|EKX53906.1| hypothetical protein GUITHDRAFT_63923 [Guillardia theta CCMP2712]
          Length = 247

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 101/203 (49%), Positives = 134/203 (66%), Gaps = 12/203 (5%)

Query: 124 LKKHHAPTT-FSDKMALWTVKSLRWPTDLFFQRRYG--------CRAMMLETVAAVPGMV 174
           ++K H P    +D++A   VK  RW  D F   R+G         R   LETVAAVPGM 
Sbjct: 14  VRKTHKPIEGLADRLAFSGVKLCRWSFDTFSGFRFGELTESKVISRICFLETVAAVPGMT 73

Query: 175 GGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFN 234
            GML H +SLRR +   GWI  LLEEAENERMHL+TF+++ KP +  R  V A QG+F N
Sbjct: 74  AGMLRHLRSLRRMDRDHGWIHTLLEEAENERMHLLTFVKLKKPSYAFRTAVVATQGIFMN 133

Query: 235 AYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPP 291
            +F+ Y+ SP+F HR VGYLEEEA+ +YT+ + E+D G +   +  PAP IA DYW L P
Sbjct: 134 LFFVAYIASPRFCHRFVGYLEEEAVKTYTDIIHEIDNGKLKHWQTQPAPQIAIDYWHLRP 193

Query: 292 NSTLKDVVLVVRADEAHHRDVNH 314
           +++++D++L VR DEA+HRDVNH
Sbjct: 194 DASMRDLMLAVRMDEANHRDVNH 216


>gi|312885255|ref|ZP_07744933.1| alternative oxidase 1 [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367114|gb|EFP94688.1| alternative oxidase 1 [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 210

 Score =  207 bits (528), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 99/194 (51%), Positives = 133/194 (68%)

Query: 125 KKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSL 184
           +KH+ P + S+K+AL   K L+   +LF+  +Y  RAM+LET+AAVPGMV G+  H K+L
Sbjct: 5   QKHYTPNSGSEKIALLVTKLLKKTLNLFYGGKYARRAMLLETIAAVPGMVAGVFNHLKAL 64

Query: 185 RRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISP 244
           RR +  GGWIK LL+EA+NERMHLM F+ + +P   ERALV  +Q  F   Y   YL+S 
Sbjct: 65  RRMKDDGGWIKELLDEADNERMHLMIFLRITQPSIIERALVMLIQFFFVLIYSFVYLLSS 124

Query: 245 KFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRA 304
           K AHR+VGY EEEA +SY EF++++  G +EN PAPAIA  Y+ L  ++ L DV+  +R 
Sbjct: 125 KTAHRIVGYFEEEACNSYCEFIEKILDGTVENSPAPAIAIRYYSLQDDAKLLDVLECIRD 184

Query: 305 DEAHHRDVNHYASD 318
           DEA HRD NH  +D
Sbjct: 185 DEAKHRDKNHDIAD 198


>gi|428185052|gb|EKX53905.1| hypothetical protein GUITHDRAFT_100154 [Guillardia theta CCMP2712]
          Length = 285

 Score =  207 bits (528), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 101/203 (49%), Positives = 134/203 (66%), Gaps = 12/203 (5%)

Query: 124 LKKHHAPTT-FSDKMALWTVKSLRWPTDLFFQRRYG--------CRAMMLETVAAVPGMV 174
           ++K H P    +D++A   VK  RW  D F   R+G         R   LETVAAVPGM 
Sbjct: 52  VRKTHKPIEGLADRLAFSGVKLCRWSFDTFSGFRFGELTESKVISRICFLETVAAVPGMT 111

Query: 175 GGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFN 234
            GML H +SLRR +   GWI  LLEEAENERMHL+TF+++ KP +  R  V A QG+F N
Sbjct: 112 AGMLRHLRSLRRMDRDHGWIHTLLEEAENERMHLLTFVKLKKPSYAFRTAVVATQGIFMN 171

Query: 235 AYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPP 291
            +F+ Y+ SP+F HR VGYLEEEA+ +YT+ + E+D G +   +  PAP IA DYW L P
Sbjct: 172 LFFVAYIASPRFCHRFVGYLEEEAVKTYTDIIHEIDNGKLKHWQTQPAPQIAIDYWHLRP 231

Query: 292 NSTLKDVVLVVRADEAHHRDVNH 314
           +++++D++L VR DEA+HRDVNH
Sbjct: 232 DASMRDLMLAVRMDEANHRDVNH 254


>gi|116310409|emb|CAH67418.1| OSIGBa0143N19.12 [Oryza sativa Indica Group]
          Length = 125

 Score =  207 bits (528), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 92/125 (73%), Positives = 110/125 (88%)

Query: 212 MEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDK 271
           MEVAKP+WYER LV A+Q VFFN YF+GYL+SPK AHR+VGYLEEEAIHSYTE+LK+++ 
Sbjct: 1   MEVAKPRWYERTLVLAIQRVFFNTYFIGYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIEA 60

Query: 272 GNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPA 331
           G IENVPAP IA DYWRLP  +TLKDVV+VVRA+EAHHRDVNH+ASD+H+Q   L+++PA
Sbjct: 61  GKIENVPAPPIAIDYWRLPTGATLKDVVVVVRANEAHHRDVNHFASDVHFQRMDLKDTPA 120

Query: 332 PLGYH 336
           PL YH
Sbjct: 121 PLDYH 125


>gi|218195344|gb|EEC77771.1| hypothetical protein OsI_16922 [Oryza sativa Indica Group]
          Length = 128

 Score =  207 bits (527), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 94/128 (73%), Positives = 110/128 (85%)

Query: 209 MTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 268
           MTFMEVAK +WYER LV AVQ VFFN YFLGYL+SPK AHR+V YLEEEAIHSYTE+LK+
Sbjct: 1   MTFMEVAKQRWYERTLVLAVQRVFFNTYFLGYLLSPKLAHRVVAYLEEEAIHSYTEYLKD 60

Query: 269 LDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRE 328
           ++ G IENVPAP IA DYWRLP  +TLKDVV+VVRA+EAHHRDVNH+ASD+H+Q   L++
Sbjct: 61  IEAGKIENVPAPPIAIDYWRLPTGATLKDVVVVVRANEAHHRDVNHFASDVHFQRMDLKD 120

Query: 329 SPAPLGYH 336
           + APL YH
Sbjct: 121 THAPLDYH 128


>gi|84386378|ref|ZP_00989406.1| alternative oxidase [Vibrio splendidus 12B01]
 gi|84378802|gb|EAP95657.1| alternative oxidase [Vibrio splendidus 12B01]
          Length = 210

 Score =  206 bits (525), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 96/194 (49%), Positives = 132/194 (68%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 186
           H+ P  FS+K+AL   + L+   +LF+ +    RAM+LET+AAVPGMV G+  H K+LRR
Sbjct: 7   HYKPEIFSEKVALLVTRLLKKTLNLFYGKHLAKRAMLLETIAAVPGMVAGVFNHLKALRR 66

Query: 187 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 246
            +  GGWIK LL+EA+NERMHLM F+ V  P   ER LV  +Q +F   Y + YL+S K 
Sbjct: 67  MKDDGGWIKELLDEADNERMHLMIFLTVTNPSIIERILVMLLQFIFLLIYGVIYLVSSKT 126

Query: 247 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 306
           AHR+VGY EEEA +SY+E++ ++  G + N PAP IA  Y+RLP N+T  DV+  +R DE
Sbjct: 127 AHRIVGYFEEEACNSYSEYISKIQDGTLPNHPAPEIAIKYYRLPENATFLDVLFCIREDE 186

Query: 307 AHHRDVNHYASDIH 320
           A HRD NH  ++++
Sbjct: 187 AKHRDKNHDIANLY 200


>gi|148981866|ref|ZP_01816551.1| alternative oxidase [Vibrionales bacterium SWAT-3]
 gi|145960717|gb|EDK26058.1| alternative oxidase [Vibrionales bacterium SWAT-3]
          Length = 210

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 99/202 (49%), Positives = 138/202 (68%), Gaps = 1/202 (0%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 186
           H+ P  FS+K+AL   + L+   +LF+ +    RAM+LET+AAVPGMV G+  H K+LRR
Sbjct: 7   HYKPEIFSEKVALLVTRLLKKTLNLFYGKHLAKRAMLLETIAAVPGMVAGVFNHLKALRR 66

Query: 187 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 246
            +  GGWIK LL+EA+NERMHLM F+ V KP   ER LV  +Q +F   Y + YL+S K 
Sbjct: 67  MKDDGGWIKELLDEADNERMHLMIFLTVTKPSIIERILVMLLQFIFLIIYGVIYLVSSKT 126

Query: 247 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 306
           AHR+VGY EEEA +SY+E++ ++++G + N PAP IA  Y+RLP  +T  DV+  +R DE
Sbjct: 127 AHRIVGYFEEEACNSYSEYISKIEEGALPNHPAPEIAITYYRLPEGATFLDVLFRIREDE 186

Query: 307 AHHRDVNHYASDIHYQGRQLRE 328
           A HRD NH  +++ Y+ + L E
Sbjct: 187 AKHRDKNHDIANL-YKTKDLPE 207


>gi|27650410|emb|CAD33257.1| alternative oxidase [Crocus sativus]
          Length = 156

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 101/140 (72%), Positives = 113/140 (80%), Gaps = 1/140 (0%)

Query: 198 LEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHR-MVGYLEE 256
           LEEAENERMHLMTFMEV++P+WYERALV  VQG             PK     +VGYLEE
Sbjct: 17  LEEAENERMHLMTFMEVSQPRWYERALVMTVQGSLLQCLLPRKPHLPKVCFIGVVGYLEE 76

Query: 257 EAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYA 316
           EAIHSYTEFLKELDKG+IENVPAPAIA DYWRL  ++TL+DVV+VVRADEAHHRDVNH+A
Sbjct: 77  EAIHSYTEFLKELDKGSIENVPAPAIAIDYWRLSKSATLRDVVMVVRADEAHHRDVNHFA 136

Query: 317 SDIHYQGRQLRESPAPLGYH 336
           SDIH QG +LR  PAP+GYH
Sbjct: 137 SDIHCQGHELRVHPAPVGYH 156


>gi|328875297|gb|EGG23662.1| hypothetical protein DFA_05796 [Dictyostelium fasciculatum]
          Length = 363

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 101/189 (53%), Positives = 131/189 (69%), Gaps = 1/189 (0%)

Query: 130 PTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEH 189
           P TF D  A + VKSLR  +++FF+ +Y   A +LETVAAVPGM GGML H  SLR  + 
Sbjct: 148 PKTFGDHFARYAVKSLRLLSNMFFKEKYIHYACLLETVAAVPGMAGGMLQHLHSLRTCQ- 206

Query: 190 SGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHR 249
           +   IK LL+EAENERMHLMTF+E+ KP + ER L+   Q  +   Y + YL+SPK AHR
Sbjct: 207 NNYVIKTLLDEAENERMHLMTFIEITKPTFGERVLIALAQAAYLVDYTILYLVSPKTAHR 266

Query: 250 MVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHH 309
            VG+LEEEA+ +YT  L++LD G +ENV APAIA  YW LP ++ L+DV++V+R DE  H
Sbjct: 267 FVGFLEEEAVLTYTNMLRDLDAGLVENVNAPAIAKAYWGLPEDAKLRDVIMVIRQDEVEH 326

Query: 310 RDVNHYASD 318
             VNH  S+
Sbjct: 327 AHVNHDISN 335


>gi|398396918|ref|XP_003851917.1| hypothetical protein MYCGRDRAFT_72918 [Zymoseptoria tritici IPO323]
 gi|339471797|gb|EGP86893.1| hypothetical protein MYCGRDRAFT_72918 [Zymoseptoria tritici IPO323]
          Length = 342

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 99/207 (47%), Positives = 139/207 (67%), Gaps = 14/207 (6%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL----------FFQRRYGCRAMMLETVAAVPGMVGG 176
           H  P  FSD++AL  V+ LRW  DL             R+Y  R + LE+VA VPGMV G
Sbjct: 97  HRNPKDFSDRVALTFVRVLRWGLDLATGYRKGAGNMTARQYMIRNVFLESVAGVPGMVAG 156

Query: 177 MLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAY 236
           ML H  S+RR +   GWI+ LLEE+ NERMHL+TF+++A+P W+ R +V   QGVFFNA+
Sbjct: 157 MLRHLHSMRRMKRDNGWIETLLEESFNERMHLLTFLKMAEPGWFMRVMVLGAQGVFFNAF 216

Query: 237 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNS 293
           F+ YL+SP+  HR VG+LEEEA+ +YT  + ++D G +   +N+PAP IA  YW +P  S
Sbjct: 217 FISYLLSPRTCHRFVGHLEEEAVLTYTREIADIDAGLLPEWDNLPAPDIAVKYWSMPEGS 276

Query: 294 -TLKDVVLVVRADEAHHRDVNHYASDI 319
            T++D++L +RADE+ HR+VNH   ++
Sbjct: 277 RTMRDLLLYIRADESKHREVNHTLGNL 303


>gi|428180112|gb|EKX48980.1| hypothetical protein GUITHDRAFT_68249 [Guillardia theta CCMP2712]
 gi|428180113|gb|EKX48981.1| hypothetical protein GUITHDRAFT_68214 [Guillardia theta CCMP2712]
          Length = 248

 Score =  205 bits (521), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 103/206 (50%), Positives = 130/206 (63%), Gaps = 11/206 (5%)

Query: 125 KKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC--------RAMMLETVAAVPGMVGG 176
           K H  P    D++AL  VK+ RW  D F   R+G         R   LETVA VPGM  G
Sbjct: 16  KTHKKPEDMVDRVALAAVKAARWSFDTFSGYRFGNLTEGKVINRICFLETVAGVPGMTAG 75

Query: 177 MLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAY 236
           ML H +SLR  +   GWI  LLEEAENERMHL+TF+++ +P    RA V   QGVF N +
Sbjct: 76  MLRHLRSLRIMDRDHGWIHTLLEEAENERMHLLTFVKLRRPGPLFRAAVVGTQGVFMNVF 135

Query: 237 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNS 293
           FL YL+SP+F HR VGYLEEEA+ +YT+ +  +D G +   +   AP IA DYW L P +
Sbjct: 136 FLCYLVSPRFCHRFVGYLEEEAVKTYTDIINAIDDGRLGHWKTQAAPQIAIDYWHLKPEA 195

Query: 294 TLKDVVLVVRADEAHHRDVNHYASDI 319
           T++D++L VRADEA HRDVNH  S +
Sbjct: 196 TMRDLMLAVRADEACHRDVNHTLSGL 221


>gi|328875293|gb|EGG23658.1| alternative oxidase [Dictyostelium fasciculatum]
          Length = 392

 Score =  204 bits (519), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 102/189 (53%), Positives = 131/189 (69%), Gaps = 1/189 (0%)

Query: 130 PTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEH 189
           P TF D  A + VKSLR  +++FF+ +Y   A +LETVAAVPGM GGML H  SLR  + 
Sbjct: 176 PKTFGDHFARYAVKSLRLLSNMFFKEKYIHYACLLETVAAVPGMAGGMLQHLHSLRTCK- 234

Query: 190 SGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHR 249
           +   IK LL+EAENERMHLMTF+E+ KP   ERAL+   Q  +   Y + YL+SPK AHR
Sbjct: 235 NIYVIKTLLDEAENERMHLMTFIEITKPTVGERALIALAQAAYLVDYMILYLVSPKTAHR 294

Query: 250 MVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHH 309
            VG+LEEEA+ +YT  L++LD G +ENV APAIA  YW LP ++ L+DV++V+R DE  H
Sbjct: 295 FVGFLEEEAVLTYTNMLRDLDAGLVENVNAPAIAKAYWGLPEDAKLRDVIMVIRQDEVEH 354

Query: 310 RDVNHYASD 318
             VNH  S+
Sbjct: 355 AHVNHDISN 363


>gi|121710154|ref|XP_001272693.1| alternative oxidase AlxA, putative [Aspergillus clavatus NRRL 1]
 gi|119400843|gb|EAW11267.1| alternative oxidase AlxA, putative [Aspergillus clavatus NRRL 1]
          Length = 357

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 105/218 (48%), Positives = 142/218 (65%), Gaps = 22/218 (10%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLF---------------FQ---RRYGCRAMMLETVA 168
           H    T+SD +AL TV+ LRW  DL                FQ   +++  R + LE+VA
Sbjct: 104 HRDAKTWSDWVALGTVRVLRWGMDLLSGYKHPKPGQESNTKFQMTEQKWLTRFIFLESVA 163

Query: 169 AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
            VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V   
Sbjct: 164 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLGA 223

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 285
           QGVFFN +FL YL+SP+  HR VGYLEEEA+ +YT  LK+L+ G +   E + AP IA  
Sbjct: 224 QGVFFNGFFLSYLVSPRTCHRFVGYLEEEAVITYTRALKDLETGKLPDWEKLEAPEIAVQ 283

Query: 286 YWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQ 322
           YW +P  + T+KD++L +RADEA HR+VNH   ++ + 
Sbjct: 284 YWNMPEGHRTMKDLLLYIRADEAKHREVNHTLGNLKHN 321


>gi|115399176|ref|XP_001215177.1| alternative oxidase, mitochondrial precursor [Aspergillus terreus
           NIH2624]
 gi|114192060|gb|EAU33760.1| alternative oxidase, mitochondrial precursor [Aspergillus terreus
           NIH2624]
          Length = 355

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 103/215 (47%), Positives = 139/215 (64%), Gaps = 22/215 (10%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVA 168
           H     +SD +AL TV+ LRW  DL                    ++++  R + LE+VA
Sbjct: 102 HREAKNWSDWVALGTVRMLRWGMDLVTGYRHPPPGKENDVRFRMTEQKWLTRFVFLESVA 161

Query: 169 AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
            VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V   
Sbjct: 162 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAFNERMHLLTFLKLAEPGWFMRLMVLGA 221

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 285
           QGVFFN +FL YL+SP+  HR VGYLEEEA+ +YT  +K+L+ GN+   E   AP IA  
Sbjct: 222 QGVFFNGFFLSYLVSPRTCHRFVGYLEEEAVITYTRAIKDLENGNLPLWEKKEAPEIAIQ 281

Query: 286 YWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDI 319
           YW++P    T+KD++L VRADEA HR+VNH   ++
Sbjct: 282 YWKMPEGKRTMKDLLLYVRADEAKHREVNHTLGNL 316


>gi|409040019|gb|EKM49507.1| hypothetical protein PHACADRAFT_131107 [Phanerochaete carnosa
           HHB-10118-sp]
          Length = 379

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 128/333 (38%), Positives = 172/333 (51%), Gaps = 47/333 (14%)

Query: 22  AAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKEQQREENVQTTGAAAAGGSGNK 81
            A R+L     R  ST       L ++     A+ G +   R++ V             K
Sbjct: 23  VATRLLVATYPRAFSTDTALRNSLSAKPADAKAVQGTEGLHRKDLVP---------EQRK 73

Query: 82  DEKRIVSYWGV--EAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMAL 139
            E+++++   V  E P ++ D      W  F P  + + +L      H  PTT  DK+A 
Sbjct: 74  AEEKVLTTTDVATEQPPIHGD------WVLFHPVYS-DGELKAVKVIHREPTTLPDKIAR 126

Query: 140 WTVKSLR----W---------PTDLFFQ----RRYGC---------RAMMLETVAAVPGM 173
             V + R    W         P  L       R+ G          R + LET+A VPGM
Sbjct: 127 TLVTTTRRCFDWVSGYKEKSEPPALNLSLEELRKQGYAMTDHQWLQRILFLETIAGVPGM 186

Query: 174 VGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFF 233
           V  +L H +SLR      GWI  LLEEAENERMHLMTFM + KP  + RALV   QGVF+
Sbjct: 187 VAAVLRHLRSLRLMRRDAGWIHTLLEEAENERMHLMTFMTIRKPSIFFRALVLGAQGVFY 246

Query: 234 NAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLP 290
           NA+FL YLISP+  HR V YLEEEA+H+YT  + +L+ G I   EN PAP IA DYWRL 
Sbjct: 247 NAFFLSYLISPRICHRFVAYLEEEAVHTYTRCIADLENGRIPEWENFPAPEIAKDYWRLR 306

Query: 291 PNSTLKDVVLVVRADEAHHRDVNHYASDIHYQG 323
           P++ + DV+  VR+DE+ HR VNH  +++ Y+ 
Sbjct: 307 PDAKMVDVLYAVRSDESTHRFVNHSLANLDYKS 339


>gi|225563182|gb|EEH11461.1| alternative oxidase [Ajellomyces capsulatus G186AR]
          Length = 357

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 103/218 (47%), Positives = 139/218 (63%), Gaps = 25/218 (11%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL---------------------FFQRRYGCRAMMLE 165
           H     +SD +AL TV+ LRW TDL                       +R++  R + LE
Sbjct: 101 HREAKNWSDWVALGTVRFLRWATDLATGYRHAAPGKQGVEVPEQFQMTERKWVIRFIFLE 160

Query: 166 TVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV 225
           TVA VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL++F+++A+P W+ R +V
Sbjct: 161 TVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLSFLKLAQPGWFMRLMV 220

Query: 226 FAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKG---NIENVPAPAI 282
              QGVFFN +F+ YLISP+  HR VGYLEEEA+ +YT  +K+L+ G   N  N PAP I
Sbjct: 221 LGAQGVFFNGFFISYLISPRTCHRFVGYLEEEAVMTYTHAIKDLESGKLPNWANQPAPDI 280

Query: 283 ATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDI 319
           A  YW++P    T+ D++  +RADEA HR+VNH  +++
Sbjct: 281 AVAYWQMPEGKRTILDLLYYIRADEAKHREVNHTLANL 318


>gi|449548967|gb|EMD39933.1| hypothetical protein CERSUDRAFT_92418 [Ceriporiopsis subvermispora
           B]
          Length = 343

 Score =  202 bits (513), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 117/288 (40%), Positives = 157/288 (54%), Gaps = 44/288 (15%)

Query: 71  GAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGS-------EWKWNCFRPWEAYEADLSID 123
            A  A G   KD+         E   + KDD +       +  W  F P    E   S+ 
Sbjct: 20  SAVGAEGRHKKDKT-------PEGELLTKDDATTTIPTMVKGDWVLFHPVYTPEELRSVQ 72

Query: 124 LKKHHAPTTFSDKMALWTVKSLRWPTDL--------------------------FFQRRY 157
           +  H    T SDK+A+  V+ LRW  D+                            +R++
Sbjct: 73  IM-HRDAKTLSDKVAVLFVRLLRWGFDIASGYQHKPVPPGSNMTVQELREKGYTMDERQW 131

Query: 158 GCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKP 217
             R + LE+VA VPGMV  +L H +SLR     GGWI  LLEEAENERMHLMTFM + KP
Sbjct: 132 LRRILFLESVAGVPGMVAAVLRHLRSLRLMRRDGGWIHTLLEEAENERMHLMTFMSIRKP 191

Query: 218 KWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI--- 274
             + RA+V   QGVF+NA+FL YL+SP   HR V +LEEEA+ +YT  ++EL+ G I   
Sbjct: 192 SIWFRAMVLGAQGVFYNAFFLSYLVSPTTCHRFVAHLEEEAVLTYTRCIEELESGRIPEW 251

Query: 275 ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQ 322
            + PAP IA DYWRLPP++ L DV+  VR+DE+ HR VNH  ++++Y+
Sbjct: 252 TDAPAPEIAKDYWRLPPDAKLLDVMYAVRSDESTHRFVNHSLANLNYK 299


>gi|325093130|gb|EGC46440.1| alternative oxidase [Ajellomyces capsulatus H88]
          Length = 357

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 103/218 (47%), Positives = 139/218 (63%), Gaps = 25/218 (11%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL---------------------FFQRRYGCRAMMLE 165
           H     +SD +AL TV+ LRW TDL                       +R++  R + LE
Sbjct: 101 HREAKNWSDWVALGTVRFLRWATDLATGYRHAAPGKQGVEVPEQFQMTERKWVIRFIFLE 160

Query: 166 TVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV 225
           TVA VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL++F+++A+P W+ R +V
Sbjct: 161 TVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLSFLKLAQPGWFMRLMV 220

Query: 226 FAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKG---NIENVPAPAI 282
              QGVFFN +F+ YLISP+  HR VGYLEEEA+ +YT  +K+L+ G   N  N PAP I
Sbjct: 221 LGAQGVFFNGFFISYLISPRTCHRFVGYLEEEAVMTYTHAIKDLESGKLPNWANQPAPDI 280

Query: 283 ATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDI 319
           A  YW++P    T+ D++  +RADEA HR+VNH  +++
Sbjct: 281 AVAYWQMPEGKRTILDLLYYIRADEAKHREVNHTLANL 318


>gi|51701295|sp|Q9Y711.1|AOX_AJECA RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|4768918|gb|AAD29680.1|AF133236_1 alternative oxidase [Ajellomyces capsulatus]
 gi|4768920|gb|AAD29681.1|AF133237_1 alternative oxidase [Ajellomyces capsulatus]
 gi|23452825|gb|AAN33183.1| alternative oxidase [Ajellomyces capsulatus]
          Length = 356

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 103/218 (47%), Positives = 139/218 (63%), Gaps = 25/218 (11%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL---------------------FFQRRYGCRAMMLE 165
           H     +SD +AL TV+ LRW TDL                       +R++  R + LE
Sbjct: 100 HREAKNWSDWVALGTVRFLRWATDLATGYRHAAPGKQGVEVPEQFQMTERKWVIRFIFLE 159

Query: 166 TVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV 225
           TVA VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL++F+++A+P W+ R +V
Sbjct: 160 TVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLSFLKLAQPGWFMRLMV 219

Query: 226 FAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKG---NIENVPAPAI 282
              QGVFFN +F+ YLISP+  HR VGYLEEEA+ +YT  +K+L+ G   N  N PAP I
Sbjct: 220 LGAQGVFFNGFFISYLISPRTCHRFVGYLEEEAVMTYTHAIKDLESGKLPNWANQPAPDI 279

Query: 283 ATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDI 319
           A  YW++P    T+ D++  +RADEA HR+VNH  +++
Sbjct: 280 AVAYWQMPEGKRTILDLLYYIRADEAKHREVNHTLANL 317


>gi|290980396|ref|XP_002672918.1| alternative oxidase [Naegleria gruberi]
 gi|284086498|gb|EFC40174.1| alternative oxidase [Naegleria gruberi]
          Length = 294

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 102/202 (50%), Positives = 130/202 (64%)

Query: 122 IDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHC 181
            ++K+ + P   +DK AL  +K LR     FF  RY   A++LETVAAVPG+V G   H 
Sbjct: 89  FEVKRSYKPVDLTDKTALAIMKFLRVFVHGFFGNRYIHHAVVLETVAAVPGIVAGGWRHF 148

Query: 182 KSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYL 241
            SLR      G I  L+EEAENERMHL+T+ME+ KP + ER LV   Q  F + Y   Y 
Sbjct: 149 SSLRLMRRDHGHIGELMEEAENERMHLLTWMEMTKPTFLERLLVVGAQVAFTSFYTGAYF 208

Query: 242 ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLV 301
           ++P+F HR+VGYLEEEA+ +YTEFL  +D G+I N  AP IA  YW L P++T++DVVLV
Sbjct: 209 VNPRFCHRLVGYLEEEAVGAYTEFLNAIDNGDIPNCKAPEIALKYWNLKPDATMRDVVLV 268

Query: 302 VRADEAHHRDVNHYASDIHYQG 323
           +R DE  HRD NH  SD H  G
Sbjct: 269 IRGDECMHRDYNHDMSDKHRAG 290


>gi|302509494|ref|XP_003016707.1| hypothetical protein ARB_04999 [Arthroderma benhamiae CBS 112371]
 gi|291180277|gb|EFE36062.1| hypothetical protein ARB_04999 [Arthroderma benhamiae CBS 112371]
          Length = 357

 Score =  201 bits (511), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 104/217 (47%), Positives = 141/217 (64%), Gaps = 23/217 (10%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL----------------FFQ---RRYGCRAMMLETV 167
           H    ++SD +AL TV+ LRW TDL                 FQ   R++  R + LETV
Sbjct: 103 HRETKSWSDWVALGTVRLLRWGTDLATGYRHPKAGEPAPPKHFQMNERKWLIRFVFLETV 162

Query: 168 AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 227
           A VPGMVGGML H  SLR+ +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V  
Sbjct: 163 AGVPGMVGGMLRHLHSLRKMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLG 222

Query: 228 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---NVPAPAIAT 284
            QGVFFN +FL YLISP+  HR VGYLEEEA+ +YT  +K+L+ G +    ++PAP IA 
Sbjct: 223 AQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTHAIKDLEAGKLPAWTDLPAPDIAI 282

Query: 285 DYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIH 320
            YW +P  N  + D++  +RADEA HR+VNH  ++++
Sbjct: 283 KYWNMPKGNQKMVDLLYYIRADEAKHREVNHTLANLN 319


>gi|51701294|sp|Q9P959.2|AOX_EMENI RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|259487471|tpe|CBF86176.1| TPA: Alternative oxidase, mitochondrial Precursor (EC 1.-.-.-)
           [Source:UniProtKB/Swiss-Prot;Acc:Q9P959] [Aspergillus
           nidulans FGSC A4]
          Length = 354

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 105/215 (48%), Positives = 140/215 (65%), Gaps = 22/215 (10%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLF---------------FQ---RRYGCRAMMLETVA 168
           H     +SD +AL +V+ LRW  DL                FQ   + +  R + LE+VA
Sbjct: 101 HREAKNWSDWVALGSVRLLRWGMDLVTGYKHPAPGQEDIKKFQMTEKEWLRRFVFLESVA 160

Query: 169 AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
            VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V   
Sbjct: 161 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKMAEPGWFMRLMVLGA 220

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 285
           QGVFFN +FL YLISP+  HR VGYLEEEA+ +YT  +K+L+ G +   E + AP IA  
Sbjct: 221 QGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTRAIKDLESGRLPHWEKLEAPEIAVK 280

Query: 286 YWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDI 319
           YW++P  N T+KD++L VRADEA HR+VNH   ++
Sbjct: 281 YWKMPEGNRTMKDLLLYVRADEAKHREVNHTLGNL 315


>gi|67523285|ref|XP_659703.1| hypothetical protein AN2099.2 [Aspergillus nidulans FGSC A4]
 gi|7415933|dbj|BAA93615.1| mitochondrial alternative oxidase [Emericella nidulans]
 gi|40745775|gb|EAA64931.1| hypothetical protein AN2099.2 [Aspergillus nidulans FGSC A4]
          Length = 351

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 105/215 (48%), Positives = 140/215 (65%), Gaps = 22/215 (10%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLF---------------FQ---RRYGCRAMMLETVA 168
           H     +SD +AL +V+ LRW  DL                FQ   + +  R + LE+VA
Sbjct: 98  HREAKNWSDWVALGSVRLLRWGMDLVTGYKHPAPGQEDIKKFQMTEKEWLRRFVFLESVA 157

Query: 169 AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
            VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V   
Sbjct: 158 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKMAEPGWFMRLMVLGA 217

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 285
           QGVFFN +FL YLISP+  HR VGYLEEEA+ +YT  +K+L+ G +   E + AP IA  
Sbjct: 218 QGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTRAIKDLESGRLPHWEKLEAPEIAVK 277

Query: 286 YWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDI 319
           YW++P  N T+KD++L VRADEA HR+VNH   ++
Sbjct: 278 YWKMPEGNRTMKDLLLYVRADEAKHREVNHTLGNL 312


>gi|294867900|ref|XP_002765284.1| alternative oxidase, putative [Perkinsus marinus ATCC 50983]
 gi|239865297|gb|EEQ98001.1| alternative oxidase, putative [Perkinsus marinus ATCC 50983]
          Length = 328

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 106/222 (47%), Positives = 139/222 (62%), Gaps = 12/222 (5%)

Query: 125 KKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC--------RAMMLETVAAVPGMVGG 176
           + H+ P  FSD+ A ++V++LR   D+    ++G         R + LETVAAVPGMVGG
Sbjct: 108 QTHYPPKGFSDRAAYYSVQALRQSFDILSGYKFGQHHAEMWVRRVVFLETVAAVPGMVGG 167

Query: 177 MLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAY 236
           M+ H  SLR  E   GWI  LLEEAENERMHLM  + + +P    R LV   QG+FF  Y
Sbjct: 168 MVRHLNSLRNMERDHGWIHTLLEEAENERMHLMIALTLKEPGPLLRGLVLVSQGIFFWTY 227

Query: 237 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENV---PAPAIATDYWRLPPNS 293
            L YL++PKF HR VGYLEEEA+ +YT  LK +D+G +      PAP IA DY+ L  N+
Sbjct: 228 GLLYLLAPKFNHRFVGYLEEEAVKTYTNLLKCIDEGKVSEFASEPAPFIARDYYELGENA 287

Query: 294 TLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGY 335
           TL+DV   +RADE+HHRDVNH  +     G + + +P P G+
Sbjct: 288 TLRDVFACIRADESHHRDVNHTFASADENGCKYK-NPFPPGH 328


>gi|261195168|ref|XP_002623988.1| alternative oxidase [Ajellomyces dermatitidis SLH14081]
 gi|239587860|gb|EEQ70503.1| alternative oxidase [Ajellomyces dermatitidis SLH14081]
 gi|239610651|gb|EEQ87638.1| alternative oxidase [Ajellomyces dermatitidis ER-3]
 gi|327348915|gb|EGE77772.1| alternative oxidase [Ajellomyces dermatitidis ATCC 18188]
          Length = 358

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 108/242 (44%), Positives = 150/242 (61%), Gaps = 30/242 (12%)

Query: 103 SEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL----------- 151
           + WK   F   E    D++I    H     +SD +AL TV++LR  TDL           
Sbjct: 83  TTWKHPVFT--EQQMKDIAI---AHREAKNWSDWVALGTVRALRRATDLATGYRHPLAGK 137

Query: 152 ----------FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEA 201
                       +R++  R + LETVA VPGMVGGML H +SLRR +   GWI+ LLEEA
Sbjct: 138 QEKEIPEKFQMTERKWIVRFIFLETVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEA 197

Query: 202 ENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHS 261
            NERMHL++F+++A+P W+ R +V   QGVFFN++F+ YLISP+  HR VGYLEEEA+ +
Sbjct: 198 YNERMHLLSFLKLAEPGWFMRLMVLGAQGVFFNSFFISYLISPRTCHRFVGYLEEEAVMT 257

Query: 262 YTEFLKELDKG---NIENVPAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYAS 317
           YT  +K+L+ G   N  N PAP IA +YW++P    T+ D++  +RADEA HR+VNH  +
Sbjct: 258 YTHAIKDLEAGKLPNWANQPAPDIAVEYWKMPEGKRTILDLLYYIRADEAKHREVNHTLA 317

Query: 318 DI 319
           ++
Sbjct: 318 NL 319


>gi|403351227|gb|EJY75100.1| Alternative oxidase isoform B [Oxytricha trifallax]
          Length = 275

 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 103/203 (50%), Positives = 135/203 (66%), Gaps = 10/203 (4%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL---FFQRRYG-----CRAMMLETVAAVPGMVGGML 178
           H  P  F+D++AL TVK+ R   DL   + Q RY       R + LET+A VPGM GGM 
Sbjct: 27  HRKPADFTDRLALTTVKNFRRLFDLLTGYNQDRYSGRLWLNRVIFLETIAGVPGMCGGMT 86

Query: 179 LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 238
           +H KSLR  +   G+I  LLEEAENER HL  FM    P +  RA++   QGVF+N YFL
Sbjct: 87  IHLKSLRTLKPDRGFIHYLLEEAENERTHLFLFMNYKNPSYLFRAMIAMGQGVFWNFYFL 146

Query: 239 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE--NVPAPAIATDYWRLPPNSTLK 296
            YLISP+F HR VGYLEEEA+H+Y+ FLK++D G +   NV A  +A DY++L  ++T +
Sbjct: 147 WYLISPRFCHRFVGYLEEEAVHTYSIFLKQMDAGYLPEFNVQASKMARDYYQLSDDATFR 206

Query: 297 DVVLVVRADEAHHRDVNHYASDI 319
           D+VL +RADE+ HR+ NHY SD+
Sbjct: 207 DMVLSIRADESVHREFNHYFSDL 229


>gi|452840505|gb|EME42443.1| hypothetical protein DOTSEDRAFT_175510 [Dothistroma septosporum
           NZE10]
          Length = 342

 Score =  200 bits (509), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 96/207 (46%), Positives = 139/207 (67%), Gaps = 14/207 (6%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL----------FFQRRYGCRAMMLETVAAVPGMVGG 176
           H    T SDK+A+  V++LRW  DL            +R+Y  R + LE+VA VPGMV G
Sbjct: 94  HREAKTMSDKVAVGFVRTLRWGLDLASGYTKNSGGMTERKYMIRNIFLESVAGVPGMVAG 153

Query: 177 MLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAY 236
           ML H +S+R  +   GW+++LLEE+ NERMHL+TF+++A+P W+ R LV   QGVFFNA+
Sbjct: 154 MLRHLRSMRTMKRDNGWMESLLEESYNERMHLLTFLKMAEPGWFMRFLVLGAQGVFFNAF 213

Query: 237 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPP-N 292
           F+ YL+SPK  HR VGYLEEEA+ +YT  ++++D G +     + AP IA  YW +P  +
Sbjct: 214 FVSYLVSPKTCHRFVGYLEEEAVLTYTREIEDIDAGRLPKWSQMEAPEIAVKYWNMPEGH 273

Query: 293 STLKDVVLVVRADEAHHRDVNHYASDI 319
            T++D++L +RADE+ HR+VNH   ++
Sbjct: 274 RTMRDLLLYIRADESKHREVNHTLGNL 300


>gi|417951248|ref|ZP_12594355.1| hypothetical protein VISP3789_20108 [Vibrio splendidus ATCC 33789]
 gi|342805200|gb|EGU40478.1| hypothetical protein VISP3789_20108 [Vibrio splendidus ATCC 33789]
          Length = 210

 Score =  200 bits (509), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 97/202 (48%), Positives = 136/202 (67%), Gaps = 1/202 (0%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 186
           H+ P   S+K+AL   + L+   +LF+ +    RAM+LET+AAVPGMV G+  H K+LRR
Sbjct: 7   HYQPEVLSEKVALVVTRLLKKTLNLFYGKHLAKRAMLLETIAAVPGMVAGVFNHLKALRR 66

Query: 187 FEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKF 246
            +  GGWIK LL+EA+NERMHLM F+ V KP   ER LV  +Q +F   Y + YL S K 
Sbjct: 67  MKDDGGWIKELLDEADNERMHLMIFLTVTKPSIIERILVMLLQFLFLIIYSVIYLASSKT 126

Query: 247 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADE 306
           AHR+VG+ EEEA +SY+E++ ++++G + N PAP IA  Y+RLP  +T  DV+  +R DE
Sbjct: 127 AHRIVGFFEEEACNSYSEYISKIEEGALPNHPAPEIAITYYRLPEGATFLDVLFRIREDE 186

Query: 307 AHHRDVNHYASDIHYQGRQLRE 328
           A HRD NH  +++ Y+ + L E
Sbjct: 187 AKHRDKNHDIANL-YKTKDLPE 207


>gi|327303204|ref|XP_003236294.1| alternative oxidase [Trichophyton rubrum CBS 118892]
 gi|326461636|gb|EGD87089.1| alternative oxidase [Trichophyton rubrum CBS 118892]
          Length = 357

 Score =  200 bits (508), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 104/217 (47%), Positives = 140/217 (64%), Gaps = 23/217 (10%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL----------------FFQ---RRYGCRAMMLETV 167
           H     +SD +AL TV+ LRW TDL                 FQ   R++  R + LETV
Sbjct: 103 HRETKNWSDWVALGTVRLLRWGTDLATGYRHPKPGEPAPSKHFQMNERKWLIRFVFLETV 162

Query: 168 AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 227
           A VPGMVGGML H  SLR+ +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V  
Sbjct: 163 AGVPGMVGGMLRHLHSLRKMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLG 222

Query: 228 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---NVPAPAIAT 284
            QGVFFN +FL YLISP+  HR VGYLEEEA+ +YT  +K+L+ G +    ++PAP IA 
Sbjct: 223 AQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTHAIKDLEAGKLPAWTDLPAPDIAI 282

Query: 285 DYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIH 320
            YW +P  N  + D++  +RADEA HR+VNH  ++++
Sbjct: 283 KYWNMPKGNQKMVDLLYYIRADEAKHREVNHTLANLN 319


>gi|350631272|gb|EHA19643.1| alternative oxidase [Aspergillus niger ATCC 1015]
          Length = 351

 Score =  200 bits (508), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 100/216 (46%), Positives = 140/216 (64%), Gaps = 22/216 (10%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVA 168
           H     ++D +AL TV+ LRW  DL                    ++++  R + LE+VA
Sbjct: 98  HRDAKNWADWVALGTVRMLRWGMDLVTGYRHPPPGREHEARFKMTEQKWLTRFIFLESVA 157

Query: 169 AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
            VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V   
Sbjct: 158 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLGA 217

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 285
           QGVFFN +FL YL+SP+  HR VGYLEEEA+ +YT  +KE++ G++   E   AP IA  
Sbjct: 218 QGVFFNGFFLSYLMSPRICHRFVGYLEEEAVITYTRAIKEIEAGSLPVWEKTEAPEIAVQ 277

Query: 286 YWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIH 320
           YW++P    ++KD++L VRADEA HR+VNH   +++
Sbjct: 278 YWKMPEGQRSMKDLLLYVRADEAKHREVNHTLGNLN 313


>gi|358367171|dbj|GAA83790.1| alternative oxidase, mitochondrial [Aspergillus kawachii IFO 4308]
          Length = 351

 Score =  200 bits (508), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 100/216 (46%), Positives = 140/216 (64%), Gaps = 22/216 (10%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVA 168
           H     ++D +AL TV+ LRW  DL                    ++++  R + LE+VA
Sbjct: 98  HRDAKNWADWVALGTVRMLRWGMDLVTGYRHPPPGREHEARFKMTEQKWLTRFIFLESVA 157

Query: 169 AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
            VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V   
Sbjct: 158 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLGA 217

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 285
           QGVFFN +FL YL+SP+  HR VGYLEEEA+ +YT  +KE++ G++   E   AP IA  
Sbjct: 218 QGVFFNGFFLSYLMSPRICHRFVGYLEEEAVITYTRAIKEIEAGSLPAWEKTEAPEIAVQ 277

Query: 286 YWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIH 320
           YW++P    ++KD++L VRADEA HR+VNH   +++
Sbjct: 278 YWKMPEGQRSMKDLLLYVRADEAKHREVNHTLGNLN 313


>gi|428184905|gb|EKX53759.1| hypothetical protein GUITHDRAFT_100729 [Guillardia theta CCMP2712]
          Length = 535

 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 102/201 (50%), Positives = 126/201 (62%), Gaps = 11/201 (5%)

Query: 125 KKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYG--------CRAMMLETVAAVPGMVGG 176
           K H  P   +D +A   V++ RW  D     + G         RA+ LETVA VPGMVGG
Sbjct: 137 KTHVDPKDTADSIAYRAVQTARWMFDTLSGYKIGQLTESKVINRAIFLETVAGVPGMVGG 196

Query: 177 MLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAY 236
           ML H +SLR      GWI  LLEEAENERMHL+TF+ + KP    R  V   QGVF N +
Sbjct: 197 MLRHLRSLRTMTRDHGWIHTLLEEAENERMHLLTFVTIKKPGPIFRWAVLGTQGVFMNLF 256

Query: 237 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---NVPAPAIATDYWRLPPNS 293
           F+ YLI PK  HR VGYLEEEA+ +YT+ L  +D G +    N  AP IA DYW + P++
Sbjct: 257 FVTYLIYPKICHRFVGYLEEEAVKTYTDILNAIDDGRLSSFRNARAPQIAIDYWHMKPDA 316

Query: 294 TLKDVVLVVRADEAHHRDVNH 314
           T++D+ LVVRADEA+HRDVNH
Sbjct: 317 TMRDLFLVVRADEANHRDVNH 337


>gi|6226552|sp|O74180.2|AOX_ASPNG RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|4521101|dbj|BAA32033.2| alternative oxidase [Aspergillus niger]
 gi|9650909|dbj|BAB03469.1| alternative oxidase [Aspergillus niger]
          Length = 351

 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 100/216 (46%), Positives = 140/216 (64%), Gaps = 22/216 (10%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVA 168
           H     ++D +AL TV+ LRW  DL                    ++++  R + LE+VA
Sbjct: 98  HRDAKNWADWVALGTVRMLRWGMDLVTGYRHPPPGREHEARFKMTEQKWLTRFIFLESVA 157

Query: 169 AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
            VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V   
Sbjct: 158 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLGA 217

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 285
           QGVFFN +FL YL+SP+  HR VGYLEEEA+ +YT  +KE++ G++   E   AP IA  
Sbjct: 218 QGVFFNGFFLSYLMSPRICHRFVGYLEEEAVITYTRAIKEIEAGSLPAWEKTEAPEIAVQ 277

Query: 286 YWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIH 320
           YW++P    ++KD++L VRADEA HR+VNH   +++
Sbjct: 278 YWKMPEGQRSMKDLLLYVRADEAKHREVNHTLGNLN 313


>gi|298714367|emb|CBJ27424.1| alternative oxidase isoform A [Ectocarpus siliculosus]
          Length = 422

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 105/231 (45%), Positives = 143/231 (61%), Gaps = 12/231 (5%)

Query: 112 PWEAYEADLSIDLK-KHHAPTTFSDKMALWTVKSLRW--------PTDLFFQRRYGCRAM 162
           P E + A+    +K  H  P    D +AL  V++LRW         T +  + +Y  R +
Sbjct: 128 PHEIWSAEEVNSIKPTHKDPEEAVDHIALRGVRALRWFFDVLAGFKTGVIDEHKYLNRVI 187

Query: 163 MLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYER 222
            LETVA +PGMV G L H  SLRR     GWI  LLEEAENERMHL+TF+++ +P    R
Sbjct: 188 FLETVAGIPGMVAGTLRHLTSLRRMRRDHGWIHTLLEEAENERMHLLTFLKLKQPGPVFR 247

Query: 223 ALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPA 279
             V   QGV +NA+FL YLISPK  HR VGY+EEEA+H+YT  L+++D   +    N+PA
Sbjct: 248 FAVMISQGVMYNAFFLSYLISPKACHRFVGYIEEEAVHTYTVLLEDIDANKLPLFSNLPA 307

Query: 280 PAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESP 330
           PA+A  YW+L  ++  +D+VL VRADEA+H  VNH  +D+H + +Q   +P
Sbjct: 308 PAMAKSYWKLGDDAMFRDLVLAVRADEANHCVVNHTFADMHQEFKQDAVNP 358


>gi|317032280|ref|XP_003188816.1| alternative oxidase [Aspergillus niger CBS 513.88]
          Length = 261

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 100/216 (46%), Positives = 140/216 (64%), Gaps = 22/216 (10%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVA 168
           H     ++D +AL TV+ LRW  DL                    ++++  R + LE+VA
Sbjct: 8   HRDAKNWADWVALGTVRMLRWGMDLVTGYRHPPPGREHEARFKMTEQKWLTRFIFLESVA 67

Query: 169 AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
            VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V   
Sbjct: 68  GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLGA 127

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 285
           QGVFFN +FL YL+SP+  HR VGYLEEEA+ +YT  +KE++ G++   E   AP IA  
Sbjct: 128 QGVFFNGFFLSYLMSPRICHRFVGYLEEEAVITYTRAIKEIEAGSLPVWEKTEAPEIAVQ 187

Query: 286 YWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIH 320
           YW++P    ++KD++L VRADEA HR+VNH   +++
Sbjct: 188 YWKMPEGQRSMKDLLLYVRADEAKHREVNHTLGNLN 223


>gi|145243920|ref|XP_001394472.1| alternative oxidase [Aspergillus niger CBS 513.88]
 gi|134079156|emb|CAK40685.1| alternative oxidase aox1-Aspergillus niger
          Length = 351

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 100/216 (46%), Positives = 140/216 (64%), Gaps = 22/216 (10%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVA 168
           H     ++D +AL TV+ LRW  DL                    ++++  R + LE+VA
Sbjct: 98  HRDAKNWADWVALGTVRMLRWGMDLVTGYRHPPPGREHEARFKMTEQKWLTRFIFLESVA 157

Query: 169 AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
            VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V   
Sbjct: 158 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLGA 217

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 285
           QGVFFN +FL YL+SP+  HR VGYLEEEA+ +YT  +KE++ G++   E   AP IA  
Sbjct: 218 QGVFFNGFFLSYLMSPRICHRFVGYLEEEAVITYTRAIKEIEAGSLPVWEKTEAPEIAVQ 277

Query: 286 YWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIH 320
           YW++P    ++KD++L VRADEA HR+VNH   +++
Sbjct: 278 YWKMPEGQRSMKDLLLYVRADEAKHREVNHTLGNLN 313


>gi|66813644|ref|XP_641001.1| hypothetical protein DDB_G0280819 [Dictyostelium discoideum AX4]
 gi|18147009|dbj|BAB82989.1| alternative oxidase [Dictyostelium discoideum]
 gi|60469023|gb|EAL67021.1| hypothetical protein DDB_G0280819 [Dictyostelium discoideum AX4]
          Length = 337

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 91/187 (48%), Positives = 133/187 (71%), Gaps = 1/187 (0%)

Query: 132 TFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSG 191
           + SD  A ++V  LR  ++LFF+ ++   A++LETVAAVPG+V GM LH K+LR  + S 
Sbjct: 102 SLSDNFAKFSVLFLRKFSNLFFKEKFLHYAIVLETVAAVPGLVAGMFLHLKTLRNMQ-SN 160

Query: 192 GWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMV 251
            WIK L++E ENERMHL++FME+ KP   ER +V   Q +++N + + Y++SPK AHR  
Sbjct: 161 NWIKILMDEMENERMHLLSFMELTKPTLLERGMVAVTQAIYWNLFLVFYVLSPKTAHRFT 220

Query: 252 GYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRD 311
           GYLEE+A+ +YT  L+++D G + N  AP IA +YW LP ++TL+D++LV+R DE+ HR 
Sbjct: 221 GYLEEQAVVTYTHMLEDIDSGKVPNYKAPQIAIEYWGLPEDATLRDLILVIRQDESDHRL 280

Query: 312 VNHYASD 318
           VNH  S+
Sbjct: 281 VNHEISN 287


>gi|326471371|gb|EGD95380.1| alternative oxidase [Trichophyton tonsurans CBS 112818]
 gi|326479484|gb|EGE03494.1| alternative oxidase [Trichophyton equinum CBS 127.97]
          Length = 357

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 103/217 (47%), Positives = 140/217 (64%), Gaps = 23/217 (10%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL----------------FFQ---RRYGCRAMMLETV 167
           H     +SD +AL TV+ LRW TDL                 FQ   R++  R + LETV
Sbjct: 103 HRETKNWSDWVALGTVRLLRWGTDLATGYRHPKAGEPAPSKHFQMNERKWLIRFVFLETV 162

Query: 168 AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 227
           A VPGMVGGML H  SLR+ +   GWI+ LLEEA NERMHL++F+++A+P W+ R +V  
Sbjct: 163 AGVPGMVGGMLRHLHSLRKMKRDNGWIETLLEEAYNERMHLLSFLKLAEPGWFMRLMVLG 222

Query: 228 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---NVPAPAIAT 284
            QGVFFN +FL YLISP+  HR VGYLEEEA+ +YT  +K+L+ G +    ++PAP IA 
Sbjct: 223 AQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTHAIKDLEAGKLPAWTDLPAPDIAI 282

Query: 285 DYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIH 320
            YW +P  N  + D++  +RADEA HR+VNH  ++++
Sbjct: 283 KYWNMPKGNQKIVDLLYYIRADEAKHREVNHTLANLN 319


>gi|116196868|ref|XP_001224246.1| hypothetical protein CHGG_05032 [Chaetomium globosum CBS 148.51]
 gi|88180945|gb|EAQ88413.1| hypothetical protein CHGG_05032 [Chaetomium globosum CBS 148.51]
          Length = 368

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 124/349 (35%), Positives = 186/349 (53%), Gaps = 46/349 (13%)

Query: 19  STEAAARIL----AGQTNRHLSTFLVRAPILGSRNRSTLALGGEKEQQREENVQTTGAAA 74
           S EA+ +I     A Q +R ++ F  +A  +G    +T+ L     Q R     T     
Sbjct: 3   SFEASKKICSPKQAAQLSRAVAPFFYQAHAVGLGYPATVRLAAITRQSRISLQPTPSGKR 62

Query: 75  AGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFS 134
           +  + + ++ R V +   + P + K   + W+   +      E ++   +  H +P T  
Sbjct: 63  SFSTTSVNQLRDV-FPAKDTPFIRKTPPA-WEHPGYT-----EEEMLAVVPGHRSPETVG 115

Query: 135 DKMALWTVKSLRWPTDL------------------------FFQRRYGCRAMMLETVAAV 170
           D +A   V+  RW TD+                          + ++  R + LE++A V
Sbjct: 116 DWVAWKLVRLARWATDIATGIGREQQVDMKNPTTAVAAEKPLTEAQWLVRVIFLESIAGV 175

Query: 171 PGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQG 230
           PGMVGGML H  SLRR +   GWI+ LLEE+ NERMHLMT M++A+  W+ + ++   QG
Sbjct: 176 PGMVGGMLRHLHSLRRLKRDNGWIETLLEESFNERMHLMTLMKMAEVGWFMKTMILGAQG 235

Query: 231 VFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE--NVPA---PAIATD 285
           VFFNA FL YL+SPK  HR VGYLEEEA+H+YT  L+E+++G++   + PA   P IA  
Sbjct: 236 VFFNAMFLSYLVSPKITHRFVGYLEEEAVHTYTRLLREIEQGDLPKWSDPAFQIPEIAIT 295

Query: 286 YWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPL 333
           YWR+P    T+KD++L +RADEA HR VNH  S++     + +E P P 
Sbjct: 296 YWRMPEGKRTMKDLILYIRADEAVHRGVNHTLSNL-----KQKEDPNPF 339


>gi|407924740|gb|EKG17769.1| Alternative oxidase [Macrophomina phaseolina MS6]
          Length = 350

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 99/211 (46%), Positives = 136/211 (64%), Gaps = 18/211 (8%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL--------------FFQRRYGCRAMMLETVAAVPG 172
           H    T+SDK AL  V+ LRW  DL                +R+Y  R + LE+VA VPG
Sbjct: 101 HREAKTWSDKFALMMVRVLRWGLDLASGYKHAKPGEPFQMSERKYLQRNVFLESVAGVPG 160

Query: 173 MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVF 232
           MV  +L H  S+RR +   GWI+ LLEE+ NERMHL+TF+++ +P W+ R +V   QGVF
Sbjct: 161 MVAAVLRHLHSMRRMKRDNGWIETLLEESYNERMHLLTFLKMTEPGWFMRLMVLGAQGVF 220

Query: 233 FNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRL 289
           FNA F  YL+SP+  HR VGYLEEEA+ +YT  +++LD G +   E + AP IA DYW++
Sbjct: 221 FNAMFFSYLVSPRTCHRFVGYLEEEAVLTYTREIEDLDAGRLPMWEKMQAPDIAIDYWKM 280

Query: 290 PP-NSTLKDVVLVVRADEAHHRDVNHYASDI 319
           P  N T++D++L +RADEA HR+VNH   ++
Sbjct: 281 PEGNRTMRDLLLYIRADEAKHREVNHTLGNL 311


>gi|401881329|gb|EJT45629.1| Alternative oxidase [Trichosporon asahii var. asahii CBS 2479]
 gi|406701771|gb|EKD04883.1| Alternative oxidase [Trichosporon asahii var. asahii CBS 8904]
          Length = 400

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 141/368 (38%), Positives = 188/368 (51%), Gaps = 58/368 (15%)

Query: 1   MMYRGGVRLFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKE 60
           MM R G+RL   +   T    +    L     RHLST + R     +    T+    E++
Sbjct: 1   MMVRPGIRLMGRMPTSTLLRASTPLPL-----RHLSTTIPRYEPSNALMPKTV----ERD 51

Query: 61  QQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADL 120
           +QR   V TTG  A G   ++  + + +        V  D G+   W    P    E +L
Sbjct: 52  EQRGPIVGTTGPGADGPHPSERIEPVAT--------VTHDHGN---WTMMNPIYT-EPEL 99

Query: 121 SIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQ---------------------RRYG- 158
                    P T  DK A   VK LR   D+F                       R+ G 
Sbjct: 100 DCVKVVGREPVTVGDKAAHGMVKMLRRLFDMFSGYIAKDVPASVLKENPNAIAELRKSGE 159

Query: 159 --------CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMT 210
                    R ++LE++A VPGMVGG L H +SLR     GGWI  LLEEAENERMHL+T
Sbjct: 160 LLSDKDWMTRIILLESIAGVPGMVGGTLRHLRSLRLLRRDGGWIHTLLEEAENERMHLLT 219

Query: 211 FMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELD 270
           F+ VA+P W+ RALV A QGVF+  +FL YL++PK AHR VG LEEEA+ +Y+  + +++
Sbjct: 220 FLTVAQPGWFTRALVMAGQGVFYPMFFLTYLVAPKLAHRFVGALEEEAVRTYSHCINDVE 279

Query: 271 KGNIE---NVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI----HYQG 323
           KG +    + PAP IA DYWRL PN++L DV+  VRADEA HR VNH  +D+     +  
Sbjct: 280 KGFVPEWTDKPAPQIAIDYWRLKPNASLLDVIKAVRADEATHRFVNHSLADLDQTRDFNP 339

Query: 324 RQLRESPA 331
             L E+PA
Sbjct: 340 FALAEAPA 347


>gi|226292243|gb|EEH47663.1| alternative oxidase [Paracoccidioides brasiliensis Pb18]
          Length = 352

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 101/214 (47%), Positives = 138/214 (64%), Gaps = 21/214 (9%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL-----------------FFQRRYGCRAMMLETVAA 169
           H    T+SD +AL TV+ LRW TDL                   ++++  R + LETVA 
Sbjct: 100 HRNAETWSDWVALGTVRMLRWATDLATGYNHPGKSDQNEQFVMTEKKWIIRFIFLETVAG 159

Query: 170 VPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQ 229
           VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL++F+++AKP W+ R +V   Q
Sbjct: 160 VPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLSFLKLAKPGWFMRLMVLGAQ 219

Query: 230 GVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---NVPAPAIATDY 286
           GVFFN++F+ YLISP+  HR VGYLEEEA+ +YT  + +L+ G +    N  AP IA  Y
Sbjct: 220 GVFFNSFFMAYLISPRTCHRFVGYLEEEAVMTYTHAINDLEAGKLPEWANKEAPDIAVAY 279

Query: 287 WRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDI 319
           W +P N  T+ D++  +RADEA H +VNH  +++
Sbjct: 280 WHMPENKRTILDLLYYIRADEAKHCEVNHTLANL 313


>gi|225681058|gb|EEH19342.1| alternative oxidase [Paracoccidioides brasiliensis Pb03]
          Length = 352

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 101/214 (47%), Positives = 138/214 (64%), Gaps = 21/214 (9%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL-----------------FFQRRYGCRAMMLETVAA 169
           H    T+SD +AL TV+ LRW TDL                   ++++  R + LETVA 
Sbjct: 100 HRNAETWSDWVALGTVRMLRWATDLATGYKHPGKSDQNEQFVMTEKKWIIRFIFLETVAG 159

Query: 170 VPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQ 229
           VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL++F+++AKP W+ R +V   Q
Sbjct: 160 VPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLSFLKLAKPGWFMRLMVLGAQ 219

Query: 230 GVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---NVPAPAIATDY 286
           GVFFN++F+ YLISP+  HR VGYLEEEA+ +YT  + +L+ G +    N  AP IA  Y
Sbjct: 220 GVFFNSFFMAYLISPRTCHRFVGYLEEEAVMTYTHAINDLEAGKLPEWANKEAPDIAVAY 279

Query: 287 WRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDI 319
           W +P N  T+ D++  +RADEA H +VNH  +++
Sbjct: 280 WHMPENKRTILDLLYYIRADEAKHCEVNHTLANL 313


>gi|154281621|ref|XP_001541623.1| alternative oxidase, mitochondrial precursor [Ajellomyces
           capsulatus NAm1]
 gi|150411802|gb|EDN07190.1| alternative oxidase, mitochondrial precursor [Ajellomyces
           capsulatus NAm1]
          Length = 357

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 102/218 (46%), Positives = 138/218 (63%), Gaps = 25/218 (11%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL---------------------FFQRRYGCRAMMLE 165
           H     +SD +AL TV+ LRW TDL                       +R++  R + LE
Sbjct: 101 HREAKNWSDWVALGTVRFLRWATDLATGYRHAAPGKQGVEVPEQFQMTERKWVIRFIFLE 160

Query: 166 TVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV 225
           TVA VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL++F+++A+P W+ R +V
Sbjct: 161 TVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLSFLKLAQPGWFMRLMV 220

Query: 226 FAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKG---NIENVPAPAI 282
              QGVFFN +F+ YLISP+  HR VGYLEEEA+ +YT  +K+L+ G   N  N  AP I
Sbjct: 221 LGAQGVFFNGFFISYLISPRTCHRFVGYLEEEAVMTYTHAIKDLESGKLPNWANQAAPDI 280

Query: 283 ATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDI 319
           A  YW++P    T+ D++  +RADEA HR+VNH  +++
Sbjct: 281 AVAYWQMPEGKRTILDLLYYIRADEAKHREVNHTLANL 318


>gi|453084800|gb|EMF12844.1| mitochondrial alternative oxidase [Mycosphaerella populorum SO2202]
          Length = 353

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 101/235 (42%), Positives = 151/235 (64%), Gaps = 20/235 (8%)

Query: 112 PWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL----------FFQRRYGCRA 161
           P   Y+   S+ + +     T+SD++AL  V++LRW  D+            +R+Y  R 
Sbjct: 91  PIYTYDQMTSVQVAQREC-KTWSDRIALGFVRTLRWGLDVASGYRKGSGQMSERQYMIRN 149

Query: 162 MMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYE 221
           + LE+VA VPGM  GML H  S+RR +   GWI++LLEE+ NERMHL+TF+++A+P W+ 
Sbjct: 150 IFLESVAGVPGMAAGMLRHLHSMRRMKRDNGWIESLLEESYNERMHLLTFLKMAEPGWFM 209

Query: 222 RALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVP 278
           + +V   QGVFFNA+F+ YLISPK  HR VG+LEEEA+ +YT  +++LD G++   E + 
Sbjct: 210 KIMVLGAQGVFFNAFFVSYLISPKTCHRFVGHLEEEAVLTYTREIQDLDAGHLPKWEKMV 269

Query: 279 APAIATDYWRLPPN-STLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 332
           AP IA  YW +P +  T++D++L +RADE+ HR+VNH   ++       +E P P
Sbjct: 270 APDIAVKYWNMPADRRTMRDLLLYIRADESKHREVNHTLGNL-----DQKEDPNP 319


>gi|296813341|ref|XP_002847008.1| alternative oxidase [Arthroderma otae CBS 113480]
 gi|238842264|gb|EEQ31926.1| alternative oxidase [Arthroderma otae CBS 113480]
          Length = 358

 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 104/217 (47%), Positives = 140/217 (64%), Gaps = 23/217 (10%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL----------------FFQ---RRYGCRAMMLETV 167
           H     +SD +AL TV+ LRW TDL                 FQ   R++  R + LETV
Sbjct: 104 HRETKNWSDWVALGTVRLLRWGTDLATGYKHPKPGEAAPSKHFQMNERKWLIRFVFLETV 163

Query: 168 AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 227
           A VPGMVGGML H  SLR+ +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V  
Sbjct: 164 AGVPGMVGGMLRHLHSLRKMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLG 223

Query: 228 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIAT 284
            QGVFFN +FL YLISP+  HR VGYLEEEA+ +YT  +K+L+ G +    ++PAP IA 
Sbjct: 224 AQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTHAIKDLEAGKLPAWSDLPAPDIAI 283

Query: 285 DYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIH 320
            YW +P  +  + D++  VRADEA HR+VNH  ++++
Sbjct: 284 KYWNMPEGHQKMLDLLYYVRADEAKHREVNHTLANLN 320


>gi|452981520|gb|EME81280.1| hypothetical protein MYCFIDRAFT_211800 [Pseudocercospora fijiensis
           CIRAD86]
          Length = 341

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 101/220 (45%), Positives = 141/220 (64%), Gaps = 19/220 (8%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL----------FFQRRYGCRAMMLETVAAVPGMVGG 176
           H    T+SD MAL  V++LRW  D             +R+Y  R + LE+VA VPGMV G
Sbjct: 94  HRNAKTWSDYMALGAVRTLRWGLDFATAYKKGEGQMTERKYMIRNIFLESVAGVPGMVAG 153

Query: 177 MLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAY 236
           ML H  S+RR +   GWI+ LLEE+ NERMHL+TF+++A+P W+ R +V   QGVFFNA+
Sbjct: 154 MLRHLHSMRRMKRDHGWIETLLEESYNERMHLLTFLKMAEPGWFMRFMVLGAQGVFFNAF 213

Query: 237 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPP-N 292
           F+ YLISP+  HR VG LEEEA+ +YT  + +LD G +   E + AP IA  YW +P  +
Sbjct: 214 FVSYLISPRTCHRFVGLLEEEAVITYTREIADLDAGRLPMWEKMQAPDIAVKYWNMPEGH 273

Query: 293 STLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 332
            T++D++L +RADE+ HR+VNH   +++      +E P P
Sbjct: 274 RTMRDLLLYIRADESKHREVNHTLGNLNQ-----KEDPNP 308


>gi|378731675|gb|EHY58134.1| alternative oxidase AlxA [Exophiala dermatitidis NIH/UT8656]
          Length = 349

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 101/223 (45%), Positives = 142/223 (63%), Gaps = 17/223 (7%)

Query: 114 EAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL-------------FFQRRYGCR 160
           EA E  L      H    T SDK+A   V+ LRW TDL               +R++  R
Sbjct: 88  EATEDQLKKIEIAHRETRTLSDKIAYNMVRFLRWGTDLATGYRHDPNKPYIMNERKWLVR 147

Query: 161 AMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWY 220
            + LETVA VPGMVGGML H +SLRR +   GWI+ LLE+A NERMHL+TF+++A+P W+
Sbjct: 148 FIFLETVAGVPGMVGGMLRHFRSLRRMKRDNGWIETLLEDAYNERMHLLTFLKMAEPGWF 207

Query: 221 ERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENV 277
            + ++   QGVF N +FL YL+SPK  HR VGYLEEEA  +YT  +++L+ G +   +N+
Sbjct: 208 MKLMIMGAQGVFANGFFLAYLVSPKICHRFVGYLEEEATKTYTYAIEDLENGKLPAWQNL 267

Query: 278 PAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDI 319
            AP IA  YW++P  + T+KD++  +RADEA HR+++H   ++
Sbjct: 268 EAPDIAVSYWKMPEGHRTMKDLLYYIRADEAKHREIHHTLGNL 310


>gi|402220460|gb|EJU00531.1| mitochondrial alternative oxidase [Dacryopinax sp. DJM-731 SS1]
          Length = 395

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 108/243 (44%), Positives = 142/243 (58%), Gaps = 31/243 (12%)

Query: 107 WNCFRPWEAYEADLSIDLKKHHAPTTFSDK----MALWTVKSLRWPTD------------ 150
           W  F P  + +   S+D+ +H  P TFSD+    +  +T KS  W +             
Sbjct: 92  WVLFHPVYSPKELHSVDVVRH-TPQTFSDRFIRDLVSFTRKSFDWISGYTQKELTLEDEK 150

Query: 151 -----------LFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLE 199
                      +  ++ +  R + LE++A VPGMV   L H +SLR  +  GGWI  LLE
Sbjct: 151 LSVEELRKRRWILDEKAWLNRILFLESIAGVPGMVAATLRHLRSLRLMKRDGGWIHTLLE 210

Query: 200 EAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAI 259
           EAENERMHLMTFM V +P    R LV   QGVF+N +FL YLISPK  HR VG LEEEA+
Sbjct: 211 EAENERMHLMTFMAVKQPSLLFRTLVLGAQGVFYNLFFLSYLISPKLCHRFVGCLEEEAV 270

Query: 260 HSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYA 316
            +YT  +KEL+ G +   +NV AP IA DYWRL PN+TL DV+  VR+DE+ HR VNH  
Sbjct: 271 ITYTHAIKELEAGRLPEWDNVQAPKIAIDYWRLKPNATLLDVIYAVRSDESTHRFVNHSF 330

Query: 317 SDI 319
           +++
Sbjct: 331 ANL 333


>gi|119480199|ref|XP_001260128.1| alternative oxidase AlxA, putative [Neosartorya fischeri NRRL 181]
 gi|119408282|gb|EAW18231.1| alternative oxidase AlxA, putative [Neosartorya fischeri NRRL 181]
          Length = 345

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 101/218 (46%), Positives = 138/218 (63%), Gaps = 22/218 (10%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVA 168
           H     +SD +AL TV+ LRW  DL                    ++++  R + LE+VA
Sbjct: 92  HREAKNWSDWVALGTVRVLRWGMDLVTGYRHPKPGQEHDAKFKMTEQKWLTRFVFLESVA 151

Query: 169 AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
            VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V   
Sbjct: 152 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLGA 211

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 285
           QGVFFN +FL YLISP+  HR VGYLEEEA+ +YT  +K+++ G +   E + AP IA  
Sbjct: 212 QGVFFNGFFLSYLISPRTCHRFVGYLEEEAVITYTRAIKDIEAGKLPDWEELDAPEIAVQ 271

Query: 286 YWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIHYQ 322
           YW +P     +KD++L VRADEA HR+VNH   ++ + 
Sbjct: 272 YWNMPEGQRKMKDLLLYVRADEAKHREVNHTLGNLQHN 309


>gi|315050338|ref|XP_003174543.1| alternative oxidase [Arthroderma gypseum CBS 118893]
 gi|311339858|gb|EFQ99060.1| alternative oxidase [Arthroderma gypseum CBS 118893]
          Length = 358

 Score =  197 bits (502), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 104/217 (47%), Positives = 140/217 (64%), Gaps = 23/217 (10%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL----------------FFQ---RRYGCRAMMLETV 167
           H     +SD +AL TV+ LRW TDL                 FQ   R++  R + LETV
Sbjct: 104 HRETKDWSDWVALGTVRLLRWGTDLATGYRHPKAGEPVPSGHFQMNERKWLIRFVFLETV 163

Query: 168 AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 227
           A VPGMVGGML H  SLR+ +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V  
Sbjct: 164 AGVPGMVGGMLRHLHSLRKMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLG 223

Query: 228 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIAT 284
            QGVFFN +FL YLISP+  HR VGYLEEEA+ +YT  +K+L+ G +   + +PAP IA 
Sbjct: 224 AQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTHAIKDLEDGKLPAWKELPAPDIAI 283

Query: 285 DYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIH 320
            YW +P  +  + D++  VRADEA HR+VNH  ++++
Sbjct: 284 KYWNMPEGHQKMVDLLYYVRADEAKHREVNHTLANLN 320


>gi|302662223|ref|XP_003022769.1| hypothetical protein TRV_03103 [Trichophyton verrucosum HKI 0517]
 gi|291186732|gb|EFE42151.1| hypothetical protein TRV_03103 [Trichophyton verrucosum HKI 0517]
          Length = 262

 Score =  197 bits (501), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 103/217 (47%), Positives = 140/217 (64%), Gaps = 23/217 (10%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL----------------FFQ---RRYGCRAMMLETV 167
           H    ++SD +AL TV+ LRW TDL                 FQ   R++  R + LETV
Sbjct: 8   HRETKSWSDWVALGTVRLLRWGTDLATGYRHPKAGEPAPPKHFQMNERKWLIRFVFLETV 67

Query: 168 AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 227
           A VPGMVGGML H  SLR+ +   GWI+ LLEEA NE MHL+TF+++A+P W+ R +V  
Sbjct: 68  AGVPGMVGGMLRHLHSLRKMKRDNGWIETLLEEAYNEHMHLLTFLKLAEPGWFMRLMVLG 127

Query: 228 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---NVPAPAIAT 284
            QGVFFN +FL YLISP+  HR VGYLEEEA+ +YT  +K+L+ G +    ++PAP IA 
Sbjct: 128 AQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTHAIKDLEAGKLPAWTDLPAPDIAI 187

Query: 285 DYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIH 320
            YW +P  N  + D++  +RADEA HR+VNH  ++++
Sbjct: 188 KYWNMPKGNQKMVDLLYYIRADEAKHREVNHTLANLN 224


>gi|294955666|ref|XP_002788619.1| alternative oxidase, putative [Perkinsus marinus ATCC 50983]
 gi|239904160|gb|EER20415.1| alternative oxidase, putative [Perkinsus marinus ATCC 50983]
          Length = 305

 Score =  197 bits (500), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 106/215 (49%), Positives = 135/215 (62%), Gaps = 12/215 (5%)

Query: 112 PWEAYEADLSIDLK-KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCR--------AM 162
           P   +++ L  D++  H+ P T +DK A  +V+SLR   DL    R+G R         +
Sbjct: 74  PHPIWDSSLVNDVELTHYPPNTLADKAAYASVRSLRTVFDLLSGYRFGRRDAKLWIRRVV 133

Query: 163 MLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYER 222
            LETVA VPGMVG M  H +SLR+ E   GWI  LLEEAENERMHLM  + + KP    R
Sbjct: 134 FLETVAGVPGMVGAMNRHLRSLRKMERDFGWIHTLLEEAENERMHLMIALSLMKPGPLLR 193

Query: 223 ALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVP---A 279
           ALV   QG FF  Y L Y +SP +AHR VGYLEEEA+ +YT  L+ +DKG I       A
Sbjct: 194 ALVLGAQGAFFTFYGLAYALSPNYAHRFVGYLEEEAVLTYTCLLQSVDKGQIPEFALQQA 253

Query: 280 PAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNH 314
           P +A DY++LP ++TL+DV   +RADE+HHRDVNH
Sbjct: 254 PFVAQDYYQLPSSATLRDVFACMRADESHHRDVNH 288


>gi|402471786|gb|EJW05340.1| hypothetical protein EDEG_00610 [Edhazardia aedis USNM 41457]
          Length = 266

 Score =  197 bits (500), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 105/220 (47%), Positives = 138/220 (62%), Gaps = 11/220 (5%)

Query: 106 KWNCFRPW---EAYEADLS------IDLKK--HHAPTTFSDKMALWTVKSLRWPTDLFFQ 154
           K  C+ P    + +E  +S      ID +K  H  P T +DK A  TVK LR   D +F+
Sbjct: 36  KPKCYVPLPVRKEFENPISLAKIQQIDYRKGYHFKPITLTDKFAHSTVKFLRSFADFYFK 95

Query: 155 RRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEV 214
           + Y  RA+ LETVAA+PGM+GG+  H  SLR  + +G  I  LL+EAENER HL+ F+ +
Sbjct: 96  KDYNKRAVALETVAAIPGMIGGLYRHLYSLRSLKDNGEKISKLLKEAENERQHLLAFLAI 155

Query: 215 AKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI 274
            KP   ++ L+ AVQ +FF+ YF+ Y   PK AHR VGYLEEEAI SY  + +E+ KGNI
Sbjct: 156 KKPSIIDKILIHAVQPLFFSFYFMLYGFMPKTAHRFVGYLEEEAIRSYDMYEEEILKGNI 215

Query: 275 ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNH 314
           +NV     A  YW++P N+ L D+V  VRADEA HRD NH
Sbjct: 216 KNVDISEGAKSYWKMPDNAKLLDLVRAVRADEAAHRDANH 255


>gi|301106717|ref|XP_002902441.1| alternative oxidase, mitochondrial precursor [Phytophthora
           infestans T30-4]
 gi|262098315|gb|EEY56367.1| alternative oxidase, mitochondrial precursor [Phytophthora
           infestans T30-4]
          Length = 325

 Score =  197 bits (500), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 98/219 (44%), Positives = 140/219 (63%), Gaps = 14/219 (6%)

Query: 115 AYEAD-LSIDLKKHHAPTTFSDKMALWTVKSLR----------WPTDLFFQRRYGCRAMM 163
            Y+ D +++  + HH   T S+++A   +K+LR           P     +R +  R + 
Sbjct: 93  VYDLDKITVMEETHHPVATMSERVAYLAIKTLRVGFDKVTRYRGPGGEMTERDWLHRCLF 152

Query: 164 LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERA 223
           LE++A VPGMVGGML H +SLRR +   GWI  LLEEAENERMHL+ F+ + +P W+ R 
Sbjct: 153 LESIAGVPGMVGGMLRHLRSLRRMKRDYGWIHTLLEEAENERMHLLIFLHLKQPGWFFRT 212

Query: 224 LVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---NVPAP 280
           LV   QGVFFN +FL YL+SPK  HR VGYLEEEA+ +YT  L++++ G+++      AP
Sbjct: 213 LVIGAQGVFFNGFFLTYLVSPKTCHRFVGYLEEEAVKTYTYLLQDIEDGHLDGWKQKQAP 272

Query: 281 AIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
            IA  Y++LP  S + D++  +RADE +HRDVNH  +D+
Sbjct: 273 LIAQTYYKLPEGSNIYDMIKCIRADECNHRDVNHKFADL 311


>gi|290997319|ref|XP_002681229.1| alternative oxidase [Naegleria gruberi]
 gi|284094852|gb|EFC48485.1| alternative oxidase [Naegleria gruberi]
          Length = 241

 Score =  196 bits (499), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 109/219 (49%), Positives = 142/219 (64%), Gaps = 5/219 (2%)

Query: 110 FRPWEAYEADLSIDLKKH-----HAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMML 164
           FRP+       + +L+K+     ++P   +DK+AL  +K LR     FF  RY   A++L
Sbjct: 18  FRPYGDNAHTNTQELEKYQVLRSYSPVDLTDKLALGIMKFLRVFVHGFFGNRYLHHAVVL 77

Query: 165 ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERAL 224
           ETVAAVPG+V G   H  SLR      G I  L+EEAENERMHL+T+ME+ KP + ER L
Sbjct: 78  ETVAAVPGIVAGGWRHFNSLRLMRRDHGHIGELMEEAENERMHLLTWMEMTKPTFLERML 137

Query: 225 VFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAT 284
           V   Q  F + Y + YL++P+F HR+VGYLEEEA+ +Y+EFL+ +DKG+I N  AP IA 
Sbjct: 138 VVGAQVGFTSFYTMAYLLNPRFCHRLVGYLEEEAVAAYSEFLEAIDKGDIPNCKAPEIAI 197

Query: 285 DYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQG 323
            YW L P ST++DVV+VVRADE  HRD NH  SD H  G
Sbjct: 198 KYWNLKPESTMRDVVVVVRADECMHRDYNHDMSDKHRSG 236


>gi|301106725|ref|XP_002902445.1| alternative oxidase, mitochondrial precursor [Phytophthora
           infestans T30-4]
 gi|262098319|gb|EEY56371.1| alternative oxidase, mitochondrial precursor [Phytophthora
           infestans T30-4]
          Length = 316

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 103/219 (47%), Positives = 139/219 (63%), Gaps = 20/219 (9%)

Query: 116 YEADLSIDLKK-------HHAPTTFSDKMALWTVKSLRWPTDL----------FFQRRYG 158
           +E  +  DL K       HH  T   +++A   VK LR   D+            ++ + 
Sbjct: 61  WENPIVCDLDKISTMELTHHPITKMHERVAHLAVKVLRTGFDVVSGYRGPGGGMTEKDWL 120

Query: 159 CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 218
            R + LE+VA VPGMVGGML H +SLR+F+   GWI  LLEEAENERMHL+ FM + +P 
Sbjct: 121 NRCLFLESVAGVPGMVGGMLRHLRSLRKFKRDYGWIHTLLEEAENERMHLLIFMNIKQPG 180

Query: 219 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE--- 275
           ++ R LV   QGVFFNA+FL YL+SPK  HR VGYLEEEA+ +YT  LK+++ G+++   
Sbjct: 181 YFFRTLVLGAQGVFFNAFFLTYLVSPKTCHRFVGYLEEEAVKTYTCLLKDIEDGHLDAWK 240

Query: 276 NVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNH 314
              AP IA  Y++LP +++L D+V  VRADE +HRDVNH
Sbjct: 241 EKKAPLIAQTYYKLPEDASLYDMVKCVRADECNHRDVNH 279


>gi|403337618|gb|EJY68031.1| Alternative oxidase isoform B [Oxytricha trifallax]
          Length = 278

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 92/203 (45%), Positives = 135/203 (66%), Gaps = 11/203 (5%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL--------FFQRRYGCRAMMLETVAAVPGMVGGML 178
           H  P  F DK AL  ++ +R   D+           +++  R + LET+A VPGMVGGM 
Sbjct: 42  HRKPELFRDKFALNLIRFMRTSFDIATGYNEKQMTTQKWLNRVIFLETIAGVPGMVGGMA 101

Query: 179 LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 238
            H +SLR  +   GWI +LLEEAENER HL  F+++ +P    + ++ A QG+F+N YF+
Sbjct: 102 RHLQSLRSLKPDHGWIHSLLEEAENERTHLFIFLKLKQPTALFKLMIAAAQGIFYNLYFI 161

Query: 239 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---NVPAPAIATDYWRLPPNSTL 295
            YL++PK+ HR VGYLEEEA+H+YT  LK++D G++     +PAP +A +Y++L  N+ L
Sbjct: 162 SYLLAPKYCHRFVGYLEEEAVHTYTVLLKQIDNGSLPEWAEMPAPQMAREYYKLSENAKL 221

Query: 296 KDVVLVVRADEAHHRDVNHYASD 318
           +DV+L +RADE+ HR+VNHY +D
Sbjct: 222 RDVILSIRADESIHREVNHYFTD 244


>gi|340960109|gb|EGS21290.1| hypothetical protein CTHT_0031430 [Chaetomium thermophilum var.
           thermophilum DSM 1495]
          Length = 221

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/167 (54%), Positives = 118/167 (70%), Gaps = 6/167 (3%)

Query: 159 CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 218
            R + LE++A VPGMV GML H  SLRR +   GWI+ LLEE+ NERMHL+TFM +A+P 
Sbjct: 20  VRLIFLESIAGVPGMVAGMLRHLSSLRRMKRDNGWIETLLEESYNERMHLLTFMRMAQPG 79

Query: 219 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---- 274
           W+ + ++   QGVFFNA FL YLISPK  HR VGYLEEEA+H+YT  L E+++G++    
Sbjct: 80  WFMKTMIILSQGVFFNALFLTYLISPKITHRFVGYLEEEAVHTYTRLLGEIERGDLPKWS 139

Query: 275 -ENVPAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDI 319
             N P P IA +YWRLP    T+KD+++ +RADEA HR VNH  S +
Sbjct: 140 DPNFPVPQIAIEYWRLPEGKRTMKDLIMYIRADEAVHRGVNHTLSGL 186


>gi|255932617|ref|XP_002557865.1| Pc12g10440 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582484|emb|CAP80671.1| Pc12g10440 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 362

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 99/225 (44%), Positives = 141/225 (62%), Gaps = 22/225 (9%)

Query: 117 EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYG 158
           EA +      H     +SD +AL TV+  RW  D                     + ++ 
Sbjct: 90  EAQMQSIQIAHRQTANWSDWIALGTVRFFRWGMDTATGYKHPKPGEQLPARFKMTEHKWL 149

Query: 159 CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 218
            R + LE++A VPGMVGGML H +SLR+ +   GWI+ LLEEA NERMHL+TF+++A+P 
Sbjct: 150 NRFVFLESIAGVPGMVGGMLRHLRSLRKMKRDNGWIETLLEEAFNERMHLLTFLKLAEPG 209

Query: 219 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---E 275
           W+ R +V   QGVFFN +FL YLISP+  HR VGYLEEEA+ +YT  ++EL+ GN+   +
Sbjct: 210 WFMRVMVIGAQGVFFNGFFLSYLISPRICHRFVGYLEEEAVITYTRAIEELEAGNLPEWK 269

Query: 276 NVPAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDI 319
           ++ AP IA  YW++P     +KD++L +RADEA HR+VNH  +++
Sbjct: 270 DLDAPEIAVKYWQMPEGQRKMKDLLLFIRADEAKHREVNHTLANL 314


>gi|361131765|gb|EHL03417.1| putative Alternative oxidase, mitochondrial [Glarea lozoyensis
           74030]
          Length = 269

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 98/240 (40%), Positives = 142/240 (59%), Gaps = 38/240 (15%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL---------------------------FFQRRYGC 159
           H  P  FSD++AL+ V+ LRW TD+                             +R++  
Sbjct: 9   HRKPADFSDRVALFMVRMLRWGTDIATGYKHDVESPKKIGDANVMAATKPYSMSERKWLT 68

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
           R + LE+VA VPGMV  ML H  S+RR +   GWI+ LLEE++NERMHL+TF+++A+P W
Sbjct: 69  RFVFLESVAGVPGMVAAMLRHLNSMRRLKRDNGWIETLLEESQNERMHLLTFLKMAEPGW 128

Query: 220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI----- 274
           + + ++   QGVFFN+ FL YL+SP+  HR VGYLEEEA+ +Y+  + +L+ G +     
Sbjct: 129 FMKLMILGAQGVFFNSMFLSYLVSPRTCHRFVGYLEEEAVLTYSLAISDLENGKLPLWTH 188

Query: 275 ENVPAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPL 333
            N   P IA DYW++P +  T++D++L VRADEA HR+VNH   ++        E P P 
Sbjct: 189 PNFKVPDIAVDYWKIPEDKRTMRDLLLYVRADEAKHREVNHTLGNLDQN-----EDPNPF 243


>gi|367046356|ref|XP_003653558.1| hypothetical protein THITE_2116081 [Thielavia terrestris NRRL 8126]
 gi|347000820|gb|AEO67222.1| hypothetical protein THITE_2116081 [Thielavia terrestris NRRL 8126]
          Length = 367

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 121/324 (37%), Positives = 166/324 (51%), Gaps = 42/324 (12%)

Query: 28  AGQTNRHLSTFLVRAPILGSRNRSTLALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIV 87
           A Q  R L+ F  +   LG    +TL +     Q    +     AA A  + +  E R V
Sbjct: 18  AAQLGRALTPFFCQGHTLGLAYPATLRIAAAAHQS---SFSRPPAARAFSTTSVRELRDV 74

Query: 88  SYWGVEAPKVNKDDGSEWKWNCFRPWEAY-EADLSIDLKKHHAPTTFSDKMALWTVKSLR 146
            +   + P + K   +   W    P   Y E ++      H  P T  D +A   V+  R
Sbjct: 75  -FPAKDTPFIRKTPPA---W----PHPGYSEEEMLAVTPAHREPKTIGDWVAWKLVRLAR 126

Query: 147 WPTDL------------------------FFQRRYGCRAMMLETVAAVPGMVGGMLLHCK 182
           W TDL                          + ++  R + LE++A VPGMVGGML H  
Sbjct: 127 WATDLATGIGREQQVDMKNPTTAVAAEKPLTEAQWLVRIIFLESIAGVPGMVGGMLRHLH 186

Query: 183 SLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLI 242
           SLRR +   GWI+ LLEE+ NERMHL+ F  +A+P W+ + ++   QGVFFNA FL YLI
Sbjct: 187 SLRRLKRDNGWIETLLEESYNERMHLLVFTRMAEPGWFMKTMILGAQGVFFNAMFLSYLI 246

Query: 243 SPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI-----ENVPAPAIATDYWRLPPNS-TLK 296
           SPK  HR VGYLEEEA+H+YT  LKE++ G++          P IA  YWR+P    T++
Sbjct: 247 SPKICHRFVGYLEEEAVHTYTRLLKEIENGDLPKWSNPKFEVPEIAATYWRMPEGKRTMR 306

Query: 297 DVVLVVRADEAHHRDVNHYASDIH 320
           D++L VRADEA HR VNH   +++
Sbjct: 307 DLILYVRADEAVHRGVNHTLGNLN 330


>gi|392591621|gb|EIW80948.1| alternative oxidase [Coniophora puteana RWD-64-598 SS2]
          Length = 382

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 105/242 (43%), Positives = 136/242 (56%), Gaps = 30/242 (12%)

Query: 107 WNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTD---------------- 150
           W  F P    E   ++D+  H    T SDK A   V+  RW  D                
Sbjct: 95  WVLFHPVYTPEEMKAVDVL-HRDAKTLSDKFASSLVRLARWGFDFVSGYKHKPIPPNHDM 153

Query: 151 ----------LFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEE 200
                     +  +R +  R + LE++A VPGMV  ML H  SLR      GWI  LLEE
Sbjct: 154 SLEELQKGGYVLTERAWLSRILFLESIAGVPGMVAAMLRHLGSLRLMRRDSGWIHTLLEE 213

Query: 201 AENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 260
           AENERMHLMTFM + +P  + RALV   QGVFFN +FL Y+ISP+  HR VGYLEEEA+ 
Sbjct: 214 AENERMHLMTFMTLKQPSLFFRALVLGAQGVFFNVFFLSYMISPRICHRFVGYLEEEAVV 273

Query: 261 SYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYAS 317
           +YT  ++E++ G +    N+PAP IA DYWRL P + L DV+  VR+DE+ HR VNH  +
Sbjct: 274 TYTRCIEEIEAGRLPAWSNMPAPEIAKDYWRLHPEANLLDVIYAVRSDESTHRFVNHSLA 333

Query: 318 DI 319
           ++
Sbjct: 334 NL 335


>gi|70989575|ref|XP_749637.1| alternative oxidase AlxA [Aspergillus fumigatus Af293]
 gi|66847268|gb|EAL87599.1| alternative oxidase AlxA, putative [Aspergillus fumigatus Af293]
 gi|159129043|gb|EDP54157.1| alternative oxidase AlxA, putative [Aspergillus fumigatus A1163]
          Length = 352

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 99/218 (45%), Positives = 137/218 (62%), Gaps = 22/218 (10%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVA 168
           H     +SD +AL TV+ LRW  D                     ++++  R + LE+VA
Sbjct: 99  HREAKNWSDWVALGTVRVLRWGMDFVTGYRHPKPGQEHDAKFRMTEQKWLTRFIFLESVA 158

Query: 169 AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
            VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V   
Sbjct: 159 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLGA 218

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 285
           QGVFFN +FL YLISP+  HR VGYLEEEA+ +YT  +K+++ G +   E + AP IA  
Sbjct: 219 QGVFFNGFFLSYLISPRTCHRFVGYLEEEAVITYTRAIKDIETGKLPDWEKLDAPEIAVQ 278

Query: 286 YWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIHYQ 322
           YW +P     ++D++L VRADEA HR+VNH   ++ + 
Sbjct: 279 YWNMPEGQRKMRDLLLYVRADEAKHREVNHTLGNLQHN 316


>gi|24061751|gb|AAN39883.1| mitochondrial alternative oxidase [Emericella nidulans]
          Length = 354

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 103/215 (47%), Positives = 138/215 (64%), Gaps = 22/215 (10%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLF---------------FQ---RRYGCRAMMLETVA 168
           H     +SD +AL +V+ LRW  DL                FQ   + +  R + LE+VA
Sbjct: 101 HREAKNWSDWVALGSVRLLRWGMDLVTGYKHPAPGQEDIKKFQMTEKEWLRRFVFLESVA 160

Query: 169 AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
            VPGMVGGML H +SLRR +   GWI+ LLEEA NER+ L+TF+++A P W+ R +V   
Sbjct: 161 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERLFLLTFLKMAGPGWFMRLMVLGA 220

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 285
           QGVFFN +FL YLISP+  HR VGYLEEEA+ +YT  +K+L+ G +   E + AP IA  
Sbjct: 221 QGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTRAIKDLESGRLPHWEKLEAPEIAVK 280

Query: 286 YWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDI 319
           YW++P  N T+KD++L VRADEA HR+VNH   ++
Sbjct: 281 YWKMPEGNRTMKDLLLYVRADEAKHREVNHTLGNL 315


>gi|262348244|gb|ACY56340.1| alternative oxidase [Monascus ruber]
          Length = 350

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 101/232 (43%), Positives = 143/232 (61%), Gaps = 23/232 (9%)

Query: 115 AYEADLSIDLKKHHAPT-TFSDKMALWTVKSLRWPTD------------------LFFQR 155
            Y  D   D++  H  T  ++D +AL  V+ LRW  D                  +   +
Sbjct: 84  VYTYDQMRDVRVAHRSTKNWADWVALAAVRLLRWGMDTATGYRHPPKGQENVSKFVMTDK 143

Query: 156 RYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVA 215
           ++  R + LE+VA VPGMVGG L H +SLR      GWI+ LLEEA NERMHL+TF+ VA
Sbjct: 144 KWITRFIFLESVAGVPGMVGGTLRHLRSLRFLRRDNGWIETLLEEAYNERMHLLTFLNVA 203

Query: 216 KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE 275
           +P  + R +V   QGVF+N +FL YLISP+  HR VGYLEEEA+ +YT  + ++++G + 
Sbjct: 204 RPGLFMRLMVLGAQGVFYNGFFLSYLISPRICHRFVGYLEEEAVITYTRVISDIEEGRVP 263

Query: 276 ---NVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQG 323
              N+PAP IA  YW++P  N T+KD++L VRADEA HR+VNH  ++++ + 
Sbjct: 264 EWANMPAPEIAVQYWKMPEGNRTMKDLLLYVRADEAKHREVNHTLANLNQEN 315


>gi|171676978|ref|XP_001903441.1| hypothetical protein [Podospora anserina S mat+]
 gi|51701291|sp|Q9C206.1|AOX_PODAS RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|14280024|gb|AAK58849.1|AF321004_1 alternate oxidase precursor [Podospora anserina]
 gi|12584590|emb|CAC27396.1| alternative oxidase [Podospora anserina]
 gi|170936556|emb|CAP61216.1| unnamed protein product [Podospora anserina S mat+]
          Length = 363

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 98/247 (39%), Positives = 147/247 (59%), Gaps = 35/247 (14%)

Query: 117 EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL------------------------F 152
           E ++   + +H  P + SD +A   V+  RW TD+                         
Sbjct: 93  EEEMLAVVPQHRKPGSLSDWLAWKLVRLCRWGTDIATGIKPEQQVDKSNPTTAVAAQKPL 152

Query: 153 FQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFM 212
            + ++  R + LE++A VPGMV GML H +SLRR +   GWI+ LLEE+ NERMHL+TFM
Sbjct: 153 TEAQWLVRFIFLESIAGVPGMVAGMLRHLESLRRLKRDNGWIETLLEESYNERMHLLTFM 212

Query: 213 EVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKG 272
           ++ +P W+ + ++   QGVFFNA FL YLISP+  HR VGYLEEEA+H+YT  ++E+++G
Sbjct: 213 KMCEPGWFMKTMILGAQGVFFNAMFLSYLISPRITHRFVGYLEEEAVHTYTRCIREIEQG 272

Query: 273 NI-----ENVPAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIHYQGRQL 326
           ++      N   P +A  YW++P    T++D++L +RADEA HR VNH  S++++     
Sbjct: 273 DLPKWSDPNFQIPDLAVTYWKMPEGKRTMRDLILYIRADEAVHRGVNHTLSNLNH----- 327

Query: 327 RESPAPL 333
           +E P P 
Sbjct: 328 KEDPNPF 334


>gi|295673346|ref|XP_002797219.1| alternative oxidase [Paracoccidioides sp. 'lutzii' Pb01]
 gi|226282591|gb|EEH38157.1| alternative oxidase [Paracoccidioides sp. 'lutzii' Pb01]
          Length = 352

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 101/214 (47%), Positives = 136/214 (63%), Gaps = 21/214 (9%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL-----------------FFQRRYGCRAMMLETVAA 169
           H    T+SD +AL TV+ LRW TDL                   ++++  R + LETVA 
Sbjct: 100 HRNAETWSDWVALGTVRMLRWATDLATGYKHPGKSDKNERFVMTEKKWIIRFIFLETVAG 159

Query: 170 VPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQ 229
           VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL++F+++A+P W  R +V   Q
Sbjct: 160 VPGMVGGMLRHLRSLRRMKRDHGWIETLLEEAYNERMHLLSFLKLAEPGWCMRLMVLGAQ 219

Query: 230 GVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---NVPAPAIATDY 286
           GVFFN +F+ YLISP+  HR VGYLEEEA+ +YT  + +L+ G +    N  AP IA  Y
Sbjct: 220 GVFFNTFFIAYLISPRTCHRFVGYLEEEAVMTYTHAINDLEAGKLPEWANKEAPDIAVSY 279

Query: 287 WRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDI 319
           W +P N  T+ D++  VRADEA H +VNH  +++
Sbjct: 280 WHMPENKRTILDLLYYVRADEAKHCEVNHTLANL 313


>gi|32959910|emb|CAE11918.1| alternative oxidase [Pythium aphanidermatum]
          Length = 316

 Score =  195 bits (496), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/281 (38%), Positives = 155/281 (55%), Gaps = 14/281 (4%)

Query: 48  RNRSTLALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKW 107
           R  S   LG    Q    N   + + +       +EK +++++   + +   D   E  W
Sbjct: 17  RMTSVTPLGKALSQTITNNHVLSFSTSPDAKDVTEEKPLIAHFSQSSTRHPLDKAQEPVW 76

Query: 108 NCFRPWEAYEADLSIDL-KKHHAPTTFSDKMALWTVKSLRWPTDL----------FFQRR 156
               P   Y+     D+ + HH P    ++ A   VK +R   D+            ++ 
Sbjct: 77  ENPVPHAVYDLQKIEDIPQTHHDPKKIHERAAYVAVKLVRKGFDIASGYRGPGGAMTEKD 136

Query: 157 YGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAK 216
           +  R + LETVA VPGMVGGM  H +SLR      GWI  LLEEAENERMHL+ FM + +
Sbjct: 137 WLHRCLFLETVAGVPGMVGGMARHLRSLRSMRRDYGWIHTLLEEAENERMHLLIFMNMKQ 196

Query: 217 PKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI-- 274
           P    R LV   QGVFFN +F+ YL+SP+  HR VGYLEEEA+ +YT  LK+++ G++  
Sbjct: 197 PGPLFRLLVLGAQGVFFNMFFVSYLVSPRTCHRFVGYLEEEAVKTYTGLLKDIEDGHLKE 256

Query: 275 -ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNH 314
            E + APAIA  Y++LP  +++ D++  +RADEA+HRDVNH
Sbjct: 257 WEKMTAPAIARSYYKLPDEASVYDMIKCIRADEANHRDVNH 297


>gi|169600395|ref|XP_001793620.1| hypothetical protein SNOG_03031 [Phaeosphaeria nodorum SN15]
 gi|111068642|gb|EAT89762.1| hypothetical protein SNOG_03031 [Phaeosphaeria nodorum SN15]
          Length = 348

 Score =  195 bits (495), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 101/236 (42%), Positives = 143/236 (60%), Gaps = 34/236 (14%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTD------------------LFFQRRYG-------CRA 161
           H    T SDK+AL  VK++RW  D                  +  QR+YG        R 
Sbjct: 88  HREAKTMSDKLALIAVKTMRWGLDTATGYKHEKAVALHQKDPVAAQRKYGMTAKKYMIRN 147

Query: 162 MMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYE 221
           + LE++A VPGMV GM+ H  S+RR +   GWI+ LLEE+ NERMHL+ F+++ +P  + 
Sbjct: 148 VFLESIAGVPGMVAGMIRHLNSMRRMKRDNGWIETLLEESYNERMHLLVFLKMQQPGPFM 207

Query: 222 RALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVP 278
           R +V A QGV+ NA F  YLISP+  HR+VGYLEEEA+++YT  +K+LD G +   E + 
Sbjct: 208 RFMVLAAQGVWCNAMFFAYLISPRIVHRLVGYLEEEAVYTYTRQIKDLDAGRLPEWEKLQ 267

Query: 279 APAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPL 333
           AP IA DYW++P  N T++D++L +RADE+ HR+VNH   ++       +E P P 
Sbjct: 268 APQIAIDYWKMPEGNRTMRDLLLYIRADESKHREVNHTFGNL-----DQKEDPNPF 318


>gi|115400946|ref|XP_001216061.1| alternative oxidase, mitochondrial precursor [Aspergillus terreus
           NIH2624]
 gi|114190002|gb|EAU31702.1| alternative oxidase, mitochondrial precursor [Aspergillus terreus
           NIH2624]
          Length = 324

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 103/223 (46%), Positives = 139/223 (62%), Gaps = 21/223 (9%)

Query: 112 PWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL----------------FFQR 155
           P    E  LS+ +  H    T SDK+AL TV+ LRW  D                   ++
Sbjct: 54  PVYTQEQILSVQIA-HRNAKTISDKLALGTVRFLRWGMDFVTGYRPNTSANPHANTMTEK 112

Query: 156 RYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVA 215
           ++  R + LE+VA VPGMV GML H KS+RR +   GWI+ LLEEA NERMHL+TF+ +A
Sbjct: 113 KWITRFIFLESVAGVPGMVAGMLRHLKSIRRMKRDYGWIETLLEEAYNERMHLLTFLNLA 172

Query: 216 KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI- 274
           +P  + R +V A Q VFF+A+F  YL+SP+  HR VGYLEEEA+ +YT+ +K+L+ G + 
Sbjct: 173 EPSRFMRLMVLASQMVFFSAFFTAYLVSPRICHRFVGYLEEEAVITYTKAIKDLENGLLL 232

Query: 275 --ENVPAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNH 314
             EN+ AP IA  YW +P     ++ ++L VRADEA HRDVNH
Sbjct: 233 DWENLQAPPIAIKYWNMPEGKRCMRSLLLHVRADEAKHRDVNH 275


>gi|134079505|emb|CAK46037.1| unnamed protein product [Aspergillus niger]
          Length = 310

 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 103/228 (45%), Positives = 139/228 (60%), Gaps = 27/228 (11%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVA 168
           H      SDK+AL  V+ LRW TD                     +R++  R + LE+VA
Sbjct: 57  HREAKCLSDKIALGLVRLLRWCTDFVTGYRNPERNKEIADKFDMTERKWLIRFIFLESVA 116

Query: 169 AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
            VPGMVGGML H KS+RR +   GWI++L++EA NERMHL+TF+++A P    R +V A 
Sbjct: 117 GVPGMVGGMLRHLKSIRRMKRDHGWIESLIDEAYNERMHLLTFLDLADPGIVMRLVVLAA 176

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 285
           QGVFFNA+F+ YL+SPK  HR VGYLEEEA+ +YT  +++L  G +   +N+ AP IA  
Sbjct: 177 QGVFFNAFFVFYLVSPKTCHRFVGYLEEEAVITYTHAIRQLQAGKLPAWDNLSAPEIAIK 236

Query: 286 YWRLPPNST-LKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 332
           YWR+P     + D++L VRADEA HR+VNH   ++        E P P
Sbjct: 237 YWRMPEGKQRMVDLLLYVRADEAKHREVNHTLGNLDQH-----EDPNP 279


>gi|317033065|ref|XP_001394812.2| alternative oxidase [Aspergillus niger CBS 513.88]
          Length = 300

 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 103/228 (45%), Positives = 139/228 (60%), Gaps = 27/228 (11%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVA 168
           H      SDK+AL  V+ LRW TD                     +R++  R + LE+VA
Sbjct: 47  HREAKCLSDKIALGLVRLLRWCTDFVTGYRNPERNKEIADKFDMTERKWLIRFIFLESVA 106

Query: 169 AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
            VPGMVGGML H KS+RR +   GWI++L++EA NERMHL+TF+++A P    R +V A 
Sbjct: 107 GVPGMVGGMLRHLKSIRRMKRDHGWIESLIDEAYNERMHLLTFLDLADPGIVMRLVVLAA 166

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 285
           QGVFFNA+F+ YL+SPK  HR VGYLEEEA+ +YT  +++L  G +   +N+ AP IA  
Sbjct: 167 QGVFFNAFFVFYLVSPKTCHRFVGYLEEEAVITYTHAIRQLQAGKLPAWDNLSAPEIAIK 226

Query: 286 YWRLPPNST-LKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 332
           YWR+P     + D++L VRADEA HR+VNH   ++        E P P
Sbjct: 227 YWRMPEGKQRMVDLLLYVRADEAKHREVNHTLGNLDQH-----EDPNP 269


>gi|326427287|gb|EGD72857.1| alternative oxidase [Salpingoeca sp. ATCC 50818]
          Length = 319

 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 101/204 (49%), Positives = 131/204 (64%), Gaps = 11/204 (5%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC--------RAMMLETVAAVPGMVGGML 178
           H  P    D++A + ++ +R   D+F    +G         R + LETVA +PGMV G L
Sbjct: 104 HIDPKDRHDRVAYYLIRMIRRGFDIFSGYAFGPINEHKFLRRVIFLETVAGIPGMVAGSL 163

Query: 179 LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 238
            H KSLR  +   GWI  LLEEAENERMHL+TFM++ +P    R +V A QGVF+N YFL
Sbjct: 164 RHLKSLRLMKRDHGWIHTLLEEAENERMHLLTFMQLREPGLLFRGMVLAAQGVFWNLYFL 223

Query: 239 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTL 295
           GYL SP+  HR VGYLEEEA+ +YT+ +K LD G +    N PAP IA  YW L  ++ +
Sbjct: 224 GYLASPRTCHRFVGYLEEEAVKTYTDAIKALDDGLMPTWTNKPAPDIAKTYWGLADDALM 283

Query: 296 KDVVLVVRADEAHHRDVNHYASDI 319
           +DV+L VRADEA+HRDVNH  S +
Sbjct: 284 RDVLLAVRADEANHRDVNHTLSTL 307


>gi|258574597|ref|XP_002541480.1| alternative oxidase [Uncinocarpus reesii 1704]
 gi|237901746|gb|EEP76147.1| alternative oxidase [Uncinocarpus reesii 1704]
          Length = 360

 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 99/217 (45%), Positives = 140/217 (64%), Gaps = 24/217 (11%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL--------------------FFQRRYGCRAMMLET 166
           H     +SD +AL TV+ LRW  DL                      +R++  R + LET
Sbjct: 105 HRQTKDWSDWIALGTVRMLRWGMDLATGYKHPPTGKEQKNVRPFSMDERKWIIRFIFLET 164

Query: 167 VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 226
           VAAVPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V 
Sbjct: 165 VAAVPGMVGGMLRHMRSLRRMKRDLGWIETLLEEAYNERMHLLTFLKLAEPGWFMRFMVL 224

Query: 227 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIA 283
             QGVFFNA+F+ YL+SP+  HR VGYLEEEA+ +YT  + +L+ G +   +++ AP IA
Sbjct: 225 GAQGVFFNAFFISYLLSPRTCHRFVGYLEEEAVLTYTHAINDLESGKLPRWQDMKAPDIA 284

Query: 284 TDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDI 319
             YW++P  +  + D++  +RADEA HR+VNH  +++
Sbjct: 285 VTYWKMPEGHQKILDLLYYIRADEAKHREVNHTLANL 321


>gi|169770083|ref|XP_001819511.1| alternative oxidase [Aspergillus oryzae RIB40]
 gi|83767370|dbj|BAE57509.1| unnamed protein product [Aspergillus oryzae RIB40]
 gi|391864037|gb|EIT73335.1| alternative oxidase [Aspergillus oryzae 3.042]
          Length = 353

 Score =  194 bits (492), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 98/216 (45%), Positives = 139/216 (64%), Gaps = 22/216 (10%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLF---------------FQ---RRYGCRAMMLETVA 168
           H     ++D +AL TV+ LRW  D                 FQ   +++  R + LE+VA
Sbjct: 100 HRETKDWADWVALGTVRLLRWGMDFVTGYRHPPPGKEHEAKFQMTEQKWLTRFVFLESVA 159

Query: 169 AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
            VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V   
Sbjct: 160 GVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVLGA 219

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 285
           QGVFFN +FL YL+SP+  HR VGYLEEEA+ +YT  +++++ G +     + AP IA  
Sbjct: 220 QGVFFNGFFLSYLMSPRICHRFVGYLEEEAVLTYTRAIQDIEHGKLPKWTKLEAPEIAVQ 279

Query: 286 YWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIH 320
           YW++P    T+KD+++ VRADEA HR+VNH   +++
Sbjct: 280 YWKMPEGQRTMKDLLMYVRADEAKHREVNHTLGNLN 315


>gi|380095711|emb|CCC07185.1| putative alternative oxidase [Sordaria macrospora k-hell]
          Length = 341

 Score =  194 bits (492), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 101/226 (44%), Positives = 138/226 (61%), Gaps = 14/226 (6%)

Query: 117 EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL---FFQRRYGCRAMMLETVAAVPGM 173
           E +++  + +H  P T  D +A   V+  RW TD+       +   R + LE++A VPGM
Sbjct: 91  EKEMTSVVPEHRKPETVGDWLAWKLVRICRWGTDIATGIRPEQQLVRFIFLESIAGVPGM 150

Query: 174 VGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFF 233
           V GML H  SLRR +   GWI+ LLEE+ NERMHL+TFM++ +P    + L+   QGVFF
Sbjct: 151 VAGMLRHLHSLRRLKRDNGWIETLLEESYNERMHLLTFMKMCEPGLLMKTLILGAQGVFF 210

Query: 234 NAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI-----ENVPAPAIATDYWR 288
           NA FL YLISPK  HR VGYLEEEA+H+YT  + E+++G++     E    P +A  YWR
Sbjct: 211 NAMFLSYLISPKITHRFVGYLEEEAVHTYTRCINEIEEGHLPKWRDERFQIPEMAVRYWR 270

Query: 289 LPPNS-TLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPL 333
           +P    T+KD++  VRADEA HR VNH  S++       +E P P 
Sbjct: 271 MPEGKRTMKDLIYYVRADEAVHRGVNHTLSNL-----DQKEDPNPF 311


>gi|409079050|gb|EKM79412.1| AOX alternative oxidase mitochondrial [Agaricus bisporus var.
           burnettii JB137-S8]
          Length = 375

 Score =  194 bits (492), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 121/335 (36%), Positives = 169/335 (50%), Gaps = 31/335 (9%)

Query: 1   MMYRGGVRLFSTLTARTASTEAAARILAGQTNRH-LSTFLVRAPILGSRNRSTLALGGEK 59
           M Y G V   S L  R     A  R L   +++  L++  V       RN ++ +   E 
Sbjct: 1   MRYVGTVSTLSYLPRRIGFMPAGRRTLLTSSDKETLNSSAVEKHAAERRNIASTSPAKET 60

Query: 60  EQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEAD 119
            +  +++  TT      G            W +  P  NKD+    K    R    +   
Sbjct: 61  SELTKQSAATTIPTMVRGD-----------WVLFHPVYNKDEVKAVKV-LHRKRLNFSDS 108

Query: 120 LSIDLKK------------HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETV 167
           ++  L K             H  T     M+L+ ++   +  D    + +  R + LE++
Sbjct: 109 VAYGLVKLARVLFDKISGYKHMKTPPDPNMSLYELRKAGYLLD---DKGWLSRILFLESI 165

Query: 168 AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 227
           A VPGMV   L H  SLR     GGWI   LEEAENERMHLMTFM + KP  + RALV  
Sbjct: 166 AGVPGMVAATLRHLTSLRLMRRDGGWIHTCLEEAENERMHLMTFMSLRKPSIFFRALVLG 225

Query: 228 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIAT 284
            QGVF+N +FL YL+SP+  HR VGYLEEEA+++YT  + +L+ G I    ++PAP IA 
Sbjct: 226 AQGVFYNLFFLSYLVSPRICHRFVGYLEEEAVYTYTHCIADLEAGRIPEWSDMPAPQIAI 285

Query: 285 DYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
           DYWRLP N+ L DV+  VR+DE+ HR VNH  +++
Sbjct: 286 DYWRLPKNAKLLDVIYAVRSDESTHRFVNHSFANL 320


>gi|440633254|gb|ELR03173.1| hypothetical protein GMDG_05999 [Geomyces destructans 20631-21]
          Length = 388

 Score =  194 bits (492), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 103/249 (41%), Positives = 148/249 (59%), Gaps = 37/249 (14%)

Query: 117 EADLSIDLK-KHHAPTTFSDKMALWTVKSLRWPTDL------------------------ 151
           E  ++ +++ +H  P   SD+ AL+ ++ LR  TD+                        
Sbjct: 113 EEQMTTNIRFEHRNPEDMSDRFALFLMRMLRKGTDIATGYSHNVTSAATASDPTALESTK 172

Query: 152 ---FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHL 208
                +R++  R + LE+VA VPGMV GML H  SLRR +   GWI+ LLEEA NERMHL
Sbjct: 173 PYKMSERKWLIRFLFLESVAGVPGMVAGMLRHLSSLRRMQRDNGWIETLLEEAYNERMHL 232

Query: 209 MTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 268
           +TF+++A+P W+ R +    QGVFFN+ F+ YLISP+ AHR VGYLEEEA+ +Y+  L +
Sbjct: 233 LTFLKMAEPGWFMRLMCLGAQGVFFNSMFVAYLISPRTAHRFVGYLEEEAVLTYSLVLAD 292

Query: 269 LDKGNI---ENVPAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIHYQGR 324
           L+ G +   E + AP IA +YW++P    T+KD++L VRADEA HR+VNH   ++  +  
Sbjct: 293 LEAGKLPKWEGLQAPDIAIEYWKMPEGKRTVKDLILYVRADEAKHREVNHTLGNLKQE-- 350

Query: 325 QLRESPAPL 333
              E P P 
Sbjct: 351 ---EDPNPF 356


>gi|330790443|ref|XP_003283306.1| hypothetical protein DICPUDRAFT_74305 [Dictyostelium purpureum]
 gi|325086731|gb|EGC40116.1| hypothetical protein DICPUDRAFT_74305 [Dictyostelium purpureum]
          Length = 348

 Score =  194 bits (492), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 132/192 (68%), Gaps = 1/192 (0%)

Query: 126 KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLR 185
           K + P T  D  A +TV  L+  +++ F  ++   A++LE++A+VPG+ GG++LH ++LR
Sbjct: 79  KFYEPKTIGDHFAYYTVIGLKKFSEIMFTNKHINFAIVLESIASVPGLCGGVILHLRALR 138

Query: 186 RFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPK 245
             E S  WIK L++EAENER+HLM F+E+ K   +ER LV   Q + +  YF+GY+ISPK
Sbjct: 139 TME-SCSWIKTLMDEAENERIHLMVFIELTKATLFERILVTMAQFIVWFLYFIGYIISPK 197

Query: 246 FAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRAD 305
             HR+V YLE EA+ +YT F+K++D G IENVPA  +A +YW L  ++TL+D++LV+R D
Sbjct: 198 TMHRIVSYLEYEAVKTYTNFIKDIDLGLIENVPASKLAIEYWGLDNDATLRDMILVIRQD 257

Query: 306 EAHHRDVNHYAS 317
           E  H  VNH  S
Sbjct: 258 EVDHNIVNHQIS 269


>gi|350631533|gb|EHA19904.1| hypothetical protein ASPNIDRAFT_39327 [Aspergillus niger ATCC 1015]
          Length = 345

 Score =  193 bits (491), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 100/215 (46%), Positives = 136/215 (63%), Gaps = 22/215 (10%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVA 168
           H      SDK+AL  V+ LRW TD                     +R++  R + LE+VA
Sbjct: 92  HREAKCLSDKIALGLVRLLRWCTDFVTGYRNPERNKEIADKFDMTERKWLIRFIFLESVA 151

Query: 169 AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
            VPGMVGGML H KS+RR +   GWI++L++EA NERMHL+TF+++A P    R +V A 
Sbjct: 152 GVPGMVGGMLRHLKSIRRMKRDHGWIESLIDEAYNERMHLLTFLDLADPGIVMRLVVLAA 211

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 285
           QGVFFNA+F+ YL+SPK  HR VGYLEEEA+ +YT  +++L  G +   +N+ AP IA  
Sbjct: 212 QGVFFNAFFVFYLVSPKTCHRFVGYLEEEAVITYTHAIRQLQAGKLPAWDNLSAPEIAIK 271

Query: 286 YWRLPPNST-LKDVVLVVRADEAHHRDVNHYASDI 319
           YWR+P     + D++L VRADEA HR+VNH   ++
Sbjct: 272 YWRMPEGKQRMVDLLLYVRADEAKHREVNHTLGNL 306


>gi|38018226|gb|AAR08189.1| mitochondrial cyanide-resistant terminal oxidase [Penicillium
           chrysogenum]
          Length = 361

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 97/215 (45%), Positives = 137/215 (63%), Gaps = 22/215 (10%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVA 168
           H     +SD +AL TV+  RW  D                     + ++  R + LE+VA
Sbjct: 99  HRQAANWSDWVALGTVRIFRWGMDTATGYRHPKPGQELPDMFKMTEHKWMNRFIFLESVA 158

Query: 169 AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
            VPGMVGGML H +SLR+ +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V   
Sbjct: 159 GVPGMVGGMLRHLRSLRKMKRDNGWIETLLEEAFNERMHLLTFLKLAEPGWFMRLMVIGA 218

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 285
           QGVFFN +FL YLISP+  HR VGYLEEEA+ +YT  ++EL+ G +   +++ AP IA  
Sbjct: 219 QGVFFNGFFLSYLISPRICHRFVGYLEEEAVITYTRAIEELEAGKLPQWDDLDAPEIAIK 278

Query: 286 YWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDI 319
           YW++P     +KD+++ VRADEA HR+VNH  +++
Sbjct: 279 YWQMPEGQRKMKDLLMFVRADEAKHREVNHTLANL 313


>gi|303312147|ref|XP_003066085.1| Alternative oxidase, mitochondrial precursor, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240105747|gb|EER23940.1| Alternative oxidase, mitochondrial precursor, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|320040066|gb|EFW22000.1| alternative oxidase [Coccidioides posadasii str. Silveira]
          Length = 360

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 101/227 (44%), Positives = 144/227 (63%), Gaps = 24/227 (10%)

Query: 117 EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL--------------------FFQRR 156
           E ++   +  H     +SD +AL TV+ LRW  DL                      +R+
Sbjct: 95  EKEMKDIVVAHRQTRDWSDWVALGTVRMLRWGMDLATGYKHPPAGKEQKKVKPFTMDERK 154

Query: 157 YGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAK 216
           +  R + LETVAAVPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL++F+++A+
Sbjct: 155 WIIRFIFLETVAAVPGMVGGMLRHLRSLRRMKRDLGWIETLLEEAYNERMHLLSFLKLAE 214

Query: 217 PKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI-- 274
           P W+ R +V   QGVFFNA+FL YL+SP+  HR VGYLEEEA+ +YT  + +L+ G +  
Sbjct: 215 PGWFMRLMVLGAQGVFFNAFFLSYLVSPRTCHRFVGYLEEEAVLTYTHAINDLENGKLPR 274

Query: 275 -ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDI 319
            +++ AP IA  YW++P  +  + D++  VRADEA HR+VNH  +++
Sbjct: 275 WKDMNAPDIAVTYWKMPEGHRKILDLLYYVRADEAKHREVNHTLANL 321


>gi|167518319|ref|XP_001743500.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778599|gb|EDQ92214.1| predicted protein [Monosiga brevicollis MX1]
          Length = 220

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 97/206 (47%), Positives = 132/206 (64%), Gaps = 11/206 (5%)

Query: 125 KKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC--------RAMMLETVAAVPGMVGG 176
           + H  P   SD++AL  ++ +R   D F    +G         RA+ LETVA +PGMV G
Sbjct: 3   QTHIEPKDLSDRVALTAIRIIRKGFDFFSGYMFGPINETKFLRRAIFLETVAGIPGMVAG 62

Query: 177 MLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAY 236
            L H +SLR  +   GWI  LLEEAENERMHL+TF +V +P    R++V A QG+ +NAY
Sbjct: 63  SLRHLRSLRGMQRDNGWIHTLLEEAENERMHLLTFTKVKQPGIIFRSMVLAAQGIMWNAY 122

Query: 237 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNS 293
           F+ YL+SP+  HR +GYLEEEA+ +Y+  ++ LDKG +    N  AP IA  YW L  ++
Sbjct: 123 FVAYLVSPRTCHRFIGYLEEEAVKTYSHAIEALDKGMMPTWNNKEAPEIAKTYWGLADDA 182

Query: 294 TLKDVVLVVRADEAHHRDVNHYASDI 319
            ++DV+L VRADEA+HRDVNH  S +
Sbjct: 183 LMRDVLLAVRADEANHRDVNHTLSTL 208


>gi|121712010|ref|XP_001273620.1| alternative oxidase, putative [Aspergillus clavatus NRRL 1]
 gi|119401772|gb|EAW12194.1| alternative oxidase, putative [Aspergillus clavatus NRRL 1]
          Length = 333

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 102/243 (41%), Positives = 147/243 (60%), Gaps = 38/243 (15%)

Query: 123 DLKK----HHAPTTFSDKMALWTVKSLRWPTDL-------------------------FF 153
           D+KK    H    TFSD++AL T++ LR   DL                           
Sbjct: 65  DMKKVGIAHRETRTFSDRVALATIRMLRSGFDLVSGYRHDQAVALHKKDPATAQQKYAMT 124

Query: 154 QRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFME 213
           + +Y  R + LE++A VPGMVGGML H +SLRR +   GWI+ LLEE+ NERMHL+TF++
Sbjct: 125 EEKYLIRNIFLESIAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEESYNERMHLLTFLQ 184

Query: 214 VAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN 273
           +A+P  + R LV   QGVFFNA+F+ YL++P   HR VGYLEEEA+ +YT  + +++ G 
Sbjct: 185 MAEPGLFLRLLVLGAQGVFFNAFFIAYLVNPVICHRFVGYLEEEAVITYTREIADIEAGK 244

Query: 274 I---ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRES 329
           +   EN+ AP IA  YW +P  + +++D++L +RADEA HR+VNH   ++ +     +E 
Sbjct: 245 LPKWENLQAPEIAVKYWNMPEGHRSMRDLLLYIRADEAKHREVNHTFGNLEW-----KED 299

Query: 330 PAP 332
           P P
Sbjct: 300 PNP 302


>gi|426195957|gb|EKV45886.1| AOX alternative oxidase mitochondrial precursor [Agaricus bisporus
           var. bisporus H97]
          Length = 356

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/310 (38%), Positives = 157/310 (50%), Gaps = 44/310 (14%)

Query: 41  RAPILGSRNRSTLALGG-EKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNK 99
           R  +L S ++ TL     EK      N+ +T  A       K             P + +
Sbjct: 5   RRTLLTSSDKETLNSSAVEKHAAERRNIASTSPAKETSELTKQSA------ATTIPTMVR 58

Query: 100 DDGSEWKWNCFRPWEAYEADLSIDLKK-HHAPTTFSDKMALWTVK-------------SL 145
            D     W  F P   Y  D    +K  H     FSD +A   VK              +
Sbjct: 59  GD-----WVLFHP--VYNKDEVKAVKVLHRKRLNFSDSVAYGLVKLARVLFDKISGYKHM 111

Query: 146 RWPTD----LFFQRRYG---------CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGG 192
           + P D    L+  R+ G          R + LE++A VPGMV   L H  SLR     GG
Sbjct: 112 KTPPDPNMSLYELRKAGYLLDDKGWLSRILFLESIAGVPGMVAATLRHLTSLRLMRRDGG 171

Query: 193 WIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVG 252
           WI   LEEAENERMHLMTFM + KP  + RALV   QGVF+N +FL YL+SP+  HR VG
Sbjct: 172 WIHTCLEEAENERMHLMTFMSLRKPSIFFRALVLGAQGVFYNLFFLSYLVSPRICHRFVG 231

Query: 253 YLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHH 309
           YLEEEA+++YT  + +L+ G I    ++PAP IA DYWRLP N+ L DV+  VR+DE+ H
Sbjct: 232 YLEEEAVYTYTHCIADLEAGRIPEWSDMPAPQIAIDYWRLPKNAKLLDVIYAVRSDESTH 291

Query: 310 RDVNHYASDI 319
           R VNH  +++
Sbjct: 292 RFVNHSFANL 301


>gi|119193348|ref|XP_001247280.1| alternative oxidase, mitochondrial precursor [Coccidioides immitis
           RS]
 gi|392863474|gb|EAS35773.2| alternative oxidase, mitochondrial [Coccidioides immitis RS]
          Length = 360

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 101/227 (44%), Positives = 143/227 (62%), Gaps = 24/227 (10%)

Query: 117 EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL--------------------FFQRR 156
           E ++   +  H     +SD  AL TV+ LRW  DL                      +R+
Sbjct: 95  EKEMKDIVVAHRQTRDWSDWAALGTVRMLRWGMDLATGYKHPPAGKEQKKVKPFTMDERK 154

Query: 157 YGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAK 216
           +  R + LETVAAVPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL++F+++A+
Sbjct: 155 WIIRFIFLETVAAVPGMVGGMLRHLRSLRRMKRDLGWIETLLEEAYNERMHLLSFLKLAE 214

Query: 217 PKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI-- 274
           P W+ R +V   QGVFFNA+FL YL+SP+  HR VGYLEEEA+ +YT  + +L+ G +  
Sbjct: 215 PGWFMRLMVLGAQGVFFNAFFLSYLVSPRTCHRFVGYLEEEAVLTYTHAINDLENGKLPR 274

Query: 275 -ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDI 319
            +++ AP IA  YW++P  +  + D++  VRADEA HR+VNH  +++
Sbjct: 275 WKDMNAPDIAVTYWKMPEGHRKILDLLYYVRADEAKHREVNHTLANL 321


>gi|77820273|gb|ABB04277.1| alternative oxidase isoform A [Acanthamoeba castellanii]
 gi|77820275|gb|ABB04278.1| alternative oxidase isoform A [Acanthamoeba castellanii]
 gi|440794064|gb|ELR15235.1| alternative oxidase isoform B, putative [Acanthamoeba castellanii
           str. Neff]
          Length = 370

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 97/220 (44%), Positives = 138/220 (62%), Gaps = 15/220 (6%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC--------RAMMLETVAAVPGMVGGML 178
           H  P   +DK+AL TV+ +R+  D      +G         R + LETVA VPG V  +L
Sbjct: 155 HTPPENLTDKLALNTVRLMRFNFDWMSGYSWGKLTEADWLRRIIFLETVAGVPGSVAAIL 214

Query: 179 LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 238
            H  SLRR +   GWI  LLEEAENERMHL+T +++ +P    R  V+  QG+FFN +F 
Sbjct: 215 RHLHSLRRLKRDHGWIHTLLEEAENERMHLLTGLKLKQPGKIFRTAVWVTQGIFFNFFFA 274

Query: 239 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTL 295
            YL+SP+F HR VGYLEEEA+ +YT  L +LD G +   ++ PAP IA  YW++  ++  
Sbjct: 275 AYLVSPRFCHRFVGYLEEEAVRTYTHLLHDLDAGKLPEWKDTPAPEIARQYWKMGDDAKW 334

Query: 296 KDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGY 335
           +DVV ++RADEAHHR+VNH  +++  +    +++P P G+
Sbjct: 335 RDVVALIRADEAHHREVNHTFANLQLE----QDNPFPPGH 370


>gi|390364451|ref|XP_785497.3| PREDICTED: alternative oxidase, mitochondrial-like
           [Strongylocentrotus purpuratus]
          Length = 289

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 97/210 (46%), Positives = 131/210 (62%), Gaps = 11/210 (5%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLF--------FQRRYGCRAMMLETVAAVPGMVGGML 178
           H+ P    DK A +  K+LR   D F         +R++  R + LETVA VPGMV  M 
Sbjct: 74  HNPPKERVDKAAYFACKALRANFDFFSGFSWGKRTERKWIYRIIFLETVAGVPGMVAAMS 133

Query: 179 LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 238
            H +SLRR +   GWI  LLEEAENERMHLMT +E+ +P  + R +V   QG+F N +F+
Sbjct: 134 RHLRSLRRMQRDHGWIHTLLEEAENERMHLMTALEIKQPSLFFRLMVLGAQGIFVNMFFI 193

Query: 239 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTL 295
            YL+SP+F HR VGYLEEEA+ +YT+ LK+L    +   ++  AP I+ +YW+L P++  
Sbjct: 194 SYLVSPRFCHRFVGYLEEEAVITYTKLLKDLRADALPKWKDRIAPEISINYWKLRPDADY 253

Query: 296 KDVVLVVRADEAHHRDVNHYASDIHYQGRQ 325
            D+   +RADEAHHR+VNH  SDI    R 
Sbjct: 254 IDLFRAIRADEAHHREVNHTLSDIKPDDRN 283


>gi|242765090|ref|XP_002340904.1| alternative oxidase AlxA, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218724100|gb|EED23517.1| alternative oxidase AlxA, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 362

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 100/233 (42%), Positives = 140/233 (60%), Gaps = 31/233 (13%)

Query: 126 KHHAPTTFSDKMALWTVKSLRWPTDL----------------------FFQRRYGCRAMM 163
           +H    T+SD+ AL  V+ LRW  D                         +R++  R + 
Sbjct: 104 EHRKARTWSDRFALAMVQGLRWGMDFVTGYRHPPKGDVKDPKAVTKFTMTERQWLNRVLF 163

Query: 164 LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERA 223
           LE+VA VPGMV GML H +SLR      GWI+ LLEEA NERMHL+TFM++A+P  + R 
Sbjct: 164 LESVAGVPGMVAGMLRHLRSLRTMRRDNGWIETLLEEAYNERMHLLTFMKIAEPGLFMRL 223

Query: 224 LVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAP 280
           +V   QGV+FN  F+ YLISP+  HR VGYLEEEA+ +YT  ++E++ GN+   E + AP
Sbjct: 224 MVLGAQGVYFNGLFISYLISPRTCHRFVGYLEEEAVLTYTRVIQEIEAGNLPEWEKMEAP 283

Query: 281 AIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 332
            IA  YW++P  + ++ D++L VRADEA HR+VNH   +++      +E P P
Sbjct: 284 EIAVKYWQMPEGHRSMLDLMLYVRADEAKHREVNHTLGNLNQ-----KEDPNP 331


>gi|77820269|gb|ABB04275.1| alternative oxidase isoform B [Acanthamoeba castellanii]
 gi|77820271|gb|ABB04276.1| alternative oxidase isoform B [Acanthamoeba castellanii]
 gi|440802244|gb|ELR23175.1| alternative oxidase isoform A, putative [Acanthamoeba castellanii
           str. Neff]
          Length = 374

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 97/221 (43%), Positives = 138/221 (62%), Gaps = 15/221 (6%)

Query: 126 KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC--------RAMMLETVAAVPGMVGGM 177
            H  P   +DK+AL TV+ +R+  D      +G         R + LETVA VPG V  +
Sbjct: 158 NHTPPENLTDKLALNTVRLMRFNFDWMSGYSWGKLTEADWLRRIIFLETVAGVPGSVAAI 217

Query: 178 LLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYF 237
           L H  SLRR +   GWI  LLEEAENERMHL+T +++ +P    R  V+  QG+FFN +F
Sbjct: 218 LRHLHSLRRLKRDHGWIHTLLEEAENERMHLLTGLKLKQPGKIFRTAVWVTQGIFFNFFF 277

Query: 238 LGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNST 294
             YL+SP+F HR VGYLEEEA+ +YT  L +LD G +   ++ PAP IA  YW++  ++ 
Sbjct: 278 AAYLVSPRFCHRFVGYLEEEAVRTYTHLLHDLDAGKLPEWKDTPAPEIARQYWKMGDDAK 337

Query: 295 LKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGY 335
            +DVV ++RADEAHHR+VNH  +++  +    +++P P G+
Sbjct: 338 WRDVVALIRADEAHHREVNHTFANLQLE----QDNPFPPGH 374


>gi|425778082|gb|EKV16227.1| Alternative oxidase [Penicillium digitatum Pd1]
 gi|425780618|gb|EKV18624.1| Alternative oxidase [Penicillium digitatum PHI26]
          Length = 361

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 97/215 (45%), Positives = 139/215 (64%), Gaps = 22/215 (10%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL---------------FFQ---RRYGCRAMMLETVA 168
           H   + ++D +AL TV+  RW  D                 FQ    ++  R + LE+VA
Sbjct: 99  HRQASNWADWVALGTVRMFRWGMDTATGYRHPKPGQELSGIFQMTEHKWLNRFIFLESVA 158

Query: 169 AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
            VPGMVGGML H +SLR+ +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V   
Sbjct: 159 GVPGMVGGMLRHLRSLRKMKRDNGWIETLLEEAFNERMHLLTFLKLAEPGWFMRLMVIGA 218

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 285
           QGVFFN +FL YLISP+  HR VGYLEEEA+ +Y+  ++EL+ G +   +++ AP IA  
Sbjct: 219 QGVFFNGFFLAYLISPRICHRFVGYLEEEAVITYSRAIEELETGKLPEWKDLDAPEIAIK 278

Query: 286 YWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDI 319
           YW++P     ++D++L VRADEA HR+VNH  +++
Sbjct: 279 YWQMPEGQRQMRDLLLFVRADEAKHREVNHTLANL 313


>gi|392566332|gb|EIW59508.1| alternative oxidase [Trametes versicolor FP-101664 SS1]
          Length = 315

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 105/254 (41%), Positives = 144/254 (56%), Gaps = 31/254 (12%)

Query: 100 DDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL-------- 151
           D   +  W  F P   ++   S+++  H    TFSDK+A   V   RW  DL        
Sbjct: 17  DHNIKGDWVLFHPVYTHDELRSVEVL-HRQAKTFSDKIAYSFVHLARWGFDLVSGYKHKP 75

Query: 152 -------------------FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGG 192
                                + ++  R + LE++AAVPGMV   L H +SLR  +   G
Sbjct: 76  LPPNADKMSLQELQDGGYLMNEAQWLKRILFLESIAAVPGMVAAALRHLRSLRLMQRDSG 135

Query: 193 WIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVG 252
           WI  LLEEAENERMHLMTFM +  P    RA+V A QGVF+NA+FL YLISP  +HR VG
Sbjct: 136 WIHTLLEEAENERMHLMTFMTLKNPSILFRAMVIAAQGVFYNAFFLSYLISPSTSHRFVG 195

Query: 253 YLEEEAIHSYTEFLKELDKGNIE---NVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHH 309
           +LEEEA+ +YT  ++E++ G++    ++PAP IA DYWRL P++   DV+  VR+DE+ H
Sbjct: 196 HLEEEAVITYTRCIQEIEAGHLPKWADLPAPEIAKDYWRLGPDAKFLDVIYAVRSDESTH 255

Query: 310 RDVNHYASDIHYQG 323
           R VNH  + + Y+ 
Sbjct: 256 RFVNHSLASLKYES 269


>gi|328862264|gb|EGG11365.1| hypothetical protein MELLADRAFT_74045 [Melampsora larici-populina
           98AG31]
          Length = 387

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 108/247 (43%), Positives = 144/247 (58%), Gaps = 39/247 (15%)

Query: 107 WNCFRPWEAYEADLSIDLKK----HHAPTTFSDKMALWTVKSLRWPTD------------ 150
           W  F P   YE D   +LK+     H P   SD++    VK +R+  D            
Sbjct: 91  WCLFHP--VYEPD---ELKQVKVVRHEPKDISDRIVAGLVKLIRFGFDTATRYKHPIEHQ 145

Query: 151 ------LFFQRRYG---------CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIK 195
                 L   R+ G          R + LE++A VPGMV  ML H KSLR     GGWI+
Sbjct: 146 ENSGKSLSEMRKAGLVMTPQQWMARILFLESIAGVPGMVAAMLRHFKSLRMSGRDGGWIR 205

Query: 196 ALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLE 255
            LLEEAENERMHL+TFM++ +P    RA+V   QGVF N +FL Y++SP+ AHR VG LE
Sbjct: 206 TLLEEAENERMHLLTFMKIRQPGIIFRAMVLGAQGVFANLFFLSYMVSPRAAHRFVGILE 265

Query: 256 EEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDV 312
           EEA+ +Y+  ++EL+ G +   EN+PAP IA DYWRL P++ + DV+  VRADE++HR V
Sbjct: 266 EEAVVTYSLAIRELETGRLPEWENMPAPQIAKDYWRLLPDAKMIDVLYAVRADESNHRFV 325

Query: 313 NHYASDI 319
           NH  ++I
Sbjct: 326 NHSLANI 332


>gi|46108920|ref|XP_381518.1| hypothetical protein FG01342.1 [Gibberella zeae PH-1]
          Length = 476

 Score =  191 bits (486), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 90/180 (50%), Positives = 121/180 (67%), Gaps = 11/180 (6%)

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
           R + LE+VA VPGMVGGML H  SLRR +   GWI+ LLEE+ NERMHL+TFM++ +P W
Sbjct: 154 RFIFLESVAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGW 213

Query: 220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI----- 274
           + + ++   QGVFFN+ F+ YLISPK  HR VGYLEEEA+H+YT  +KE++ GN+     
Sbjct: 214 FMKMMIIGAQGVFFNSLFVSYLISPKIVHRFVGYLEEEAVHTYTRCIKEIEDGNLPKWSD 273

Query: 275 ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPL 333
                P IA  YW++P  + T+KD++L +RADEA HR VNH   +++       E P P 
Sbjct: 274 PKFEIPDIAIQYWKMPKEHRTMKDLILYIRADEATHRGVNHTLGNLNQN-----EDPNPF 328


>gi|336470495|gb|EGO58656.1| alternative oxidase mitochondrial precursor [Neurospora tetrasperma
           FGSC 2508]
 gi|350291545|gb|EGZ72740.1| alternative oxidase mitochondrial precursor [Neurospora tetrasperma
           FGSC 2509]
          Length = 375

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 101/221 (45%), Positives = 134/221 (60%), Gaps = 30/221 (13%)

Query: 124 LKKHHAPTTFSDKMALWTVKSLRWPTDL------------------------FFQRRYGC 159
           +  H  P TF D +A   V++ R+  DL                          +R++  
Sbjct: 106 VPSHREPRTFGDWVAWKIVRTCRFWMDLVTGMRPEQQVDSKNPTTALAASKPLTERQWLV 165

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
           R + LE++A VPGMV G L H +S+RRF+   GWIK+LLEE+ NERMHL+TF+E+ KP W
Sbjct: 166 RFIFLESIAGVPGMVAGGLRHLQSIRRFQPDQGWIKSLLEESYNERMHLLTFLEMYKPGW 225

Query: 220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---- 275
           + R +V   QGVF+NA F+ YL+SPK  HR VGYLEEEA+H+YT  L ELD G ++    
Sbjct: 226 FMRLVVLGAQGVFYNAMFISYLLSPKICHRFVGYLEEEAVHTYTRCLLELDHGCLKRWSD 285

Query: 276 -NVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNH 314
            N   P IA  YW +P  + T+KD++L VRADEA HR VNH
Sbjct: 286 PNFRIPDIAVRYWNMPEGHRTMKDLILYVRADEASHRGVNH 326


>gi|332099427|gb|ABN09948.3| mitochondrial alternative oxidase [Moniliophthora perniciosa]
 gi|342349569|gb|AEL23664.1| mitochondrial alternative oxidase [Moniliophthora perniciosa]
          Length = 378

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 119/337 (35%), Positives = 166/337 (49%), Gaps = 44/337 (13%)

Query: 13  LTARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKEQQREENVQTTGA 72
           L  RT ST   AR +     R   +++ R P+    + ST             N  T   
Sbjct: 2   LAIRTQST--LARTVGTSLLRQ--SYIARYPLCRGISSST----------SNRNSLTDEQ 47

Query: 73  AAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTT 132
           A AG  G   ++R  +    E    + D      W  F P  + E +L +    H   T 
Sbjct: 48  AQAGTVGPHLQQRPTALTSAETRHQHGDAVVTGDWVLFHPVYSPE-ELKVVEVLHREATC 106

Query: 133 FSDKMALWTVKSLRWPTD--------------------------LFFQRRYGCRAMMLET 166
            SD++A   V   RW  D                          L   + +  R + LE+
Sbjct: 107 LSDRVAAGLVGLCRWGYDFVTRYKHKTIPPGKNMTLAELRKEGYLLDDKAWLSRILFLES 166

Query: 167 VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 226
           +A VPGMV   + H  SLR      GWI   LEEAENERMHLMTFM + KP  + RA++ 
Sbjct: 167 IAGVPGMVAATIRHLTSLRLMRRDNGWIHTCLEEAENERMHLMTFMTLRKPSIFFRAMIL 226

Query: 227 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIA 283
             QGVF+N +FL Y+ISP+  HR VGYLEEEA+ +YT+ +K+++ G +    ++PAP IA
Sbjct: 227 GAQGVFYNLFFLSYIISPRICHRFVGYLEEEAVLTYTKCIKDIEAGYVPEWSDMPAPKIA 286

Query: 284 TDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIH 320
            DYWRLP ++ L DV+  VR+DE  HR VNH  ++++
Sbjct: 287 IDYWRLPADAKLLDVIYAVRSDETTHRFVNHSLANLN 323


>gi|170090173|ref|XP_001876309.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164649569|gb|EDR13811.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 378

 Score =  191 bits (485), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 94/183 (51%), Positives = 118/183 (64%), Gaps = 3/183 (1%)

Query: 141 TVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEE 200
           TV  LR    L   R +  R ++LE++A VPGMV   L H  SLR      GWI   LEE
Sbjct: 143 TVAQLRKAGYLLDDRAWLTRILVLESIAGVPGMVAATLRHLTSLRLMRRDSGWIHTCLEE 202

Query: 201 AENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 260
           AENERMHLMTFM + KP    RA+V A QGVF+N +F  YLISP+  HR VGYLEEEA+ 
Sbjct: 203 AENERMHLMTFMTLRKPSIILRAIVLAAQGVFYNLFFFSYLISPRICHRFVGYLEEEAVV 262

Query: 261 SYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYAS 317
           +YT  + +L+ G I    N PAP I+ DYWRLPP++ L DV+  VR+DE  HR VNH  +
Sbjct: 263 TYTRCIADLEAGRIPEWSNKPAPEISIDYWRLPPDAKLLDVLYAVRSDETTHRFVNHSLA 322

Query: 318 DIH 320
           +++
Sbjct: 323 NLN 325


>gi|85091906|ref|XP_959131.1| alternative oxidase, mitochondrial precursor [Neurospora crassa
           OR74A]
 gi|28920531|gb|EAA29895.1| alternative oxidase, mitochondrial precursor [Neurospora crassa
           OR74A]
          Length = 375

 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 101/221 (45%), Positives = 134/221 (60%), Gaps = 30/221 (13%)

Query: 124 LKKHHAPTTFSDKMALWTVKSLRWPTDL------------------------FFQRRYGC 159
           +  H  P TF D +A   V++ R+  DL                          +R++  
Sbjct: 106 VPSHREPRTFGDWVAWKIVRTCRFWMDLVTGMRPEQQVDSKNPTTALAASKPLTERQWLV 165

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
           R + LE++A VPGMV G L H +S+RRF+   GWIK+LLEE+ NERMHL+TF+E+ KP W
Sbjct: 166 RFIFLESIAGVPGMVAGGLRHLQSIRRFQPDQGWIKSLLEESYNERMHLLTFLEMYKPGW 225

Query: 220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---- 275
           + R +V   QGVF+NA F+ YL+SPK  HR VGYLEEEA+H+YT  L ELD G ++    
Sbjct: 226 FMRLVVLGAQGVFYNAMFISYLLSPKICHRFVGYLEEEAVHTYTRCLLELDHGCLKRWSD 285

Query: 276 -NVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNH 314
            N   P IA  YW +P  + T+KD++L VRADEA HR VNH
Sbjct: 286 PNFRIPDIAVRYWNMPEGHRTMKDLILYVRADEASHRGVNH 326


>gi|33327044|gb|AAQ08896.1| SHAM-sensitive alternative terminal oxidase isozyme II [Yarrowia
           lipolytica]
          Length = 349

 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 93/212 (43%), Positives = 130/212 (61%), Gaps = 23/212 (10%)

Query: 126 KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYG------------------CRAMMLETV 167
           +H    TFSDK AL  ++++RW  DLF   R+                    R + LE++
Sbjct: 94  RHREAKTFSDKCALAAIRTMRWSFDLFTGYRHPKPGQENLKRFEMTPDKWYQRFLFLESI 153

Query: 168 AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 227
           A VPGMVGGM  H +SLR  +    WI+ LLEEA NERMHL+TF+++ KP ++ R ++  
Sbjct: 154 AGVPGMVGGMCRHLQSLRALKRDRAWIETLLEEAYNERMHLLTFLKMHKPGYFMRTMILL 213

Query: 228 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI-----ENVPAPAI 282
            QGVFFN +F+ YL+SP+  HR VGYLEEEA+ +YT  + ++D G +       V  P I
Sbjct: 214 GQGVFFNLFFMAYLMSPRICHRFVGYLEEEAVITYTRCITDIDAGRLPEWEGHKVKIPEI 273

Query: 283 ATDYWRLPPNSTLKDVVLVVRADEAHHRDVNH 314
           A DYW + PN T++D++  +RADEA H +VNH
Sbjct: 274 AIDYWHMGPNPTMRDLIEYIRADEAKHCEVNH 305


>gi|51701289|sp|Q8X1N9.1|AOX_BLUGR RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|18033103|gb|AAL56983.1|AF327336_1 alternative oxidase [Blumeria graminis]
          Length = 358

 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 95/218 (43%), Positives = 136/218 (62%), Gaps = 30/218 (13%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL------------------------FFQRRYGCRAM 162
           H  P  FSD++AL+ V+ LR+ TDL                          +R++  R +
Sbjct: 97  HRTPKDFSDRIALYLVRFLRFSTDLATGYKHDPVTITENGEKVLKKPYRMSERKWLIRMV 156

Query: 163 MLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYER 222
            LE+VA VPGMV GML H  SLRR +   GWI+ LLEEA NERMHL+TF+++AKP W+ +
Sbjct: 157 FLESVAGVPGMVAGMLRHLHSLRRLKRDNGWIETLLEEAYNERMHLLTFLKMAKPGWFMK 216

Query: 223 ALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPA- 281
            ++   QGVFFN+ FL YLISP+  HR V YLEEEA+ +Y+  +++++ G +    +P  
Sbjct: 217 FMIIGAQGVFFNSMFLSYLISPRTCHRFVAYLEEEAVLTYSTAIQDIEAGLLPKWTSPEF 276

Query: 282 ----IATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNH 314
               +A  YW++P  N T++D++L +RADEA HR+VNH
Sbjct: 277 RIPDLAVQYWKIPEGNRTMRDLLLYIRADEAKHREVNH 314


>gi|50550329|ref|XP_502637.1| YALI0D09933p [Yarrowia lipolytica]
 gi|49648505|emb|CAG80825.1| YALI0D09933p [Yarrowia lipolytica CLIB122]
          Length = 349

 Score =  191 bits (484), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 93/212 (43%), Positives = 130/212 (61%), Gaps = 23/212 (10%)

Query: 126 KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYG------------------CRAMMLETV 167
           +H    TFSDK AL  ++++RW  DLF   R+                    R + LE++
Sbjct: 94  RHREAKTFSDKCALAAIRTMRWSFDLFTGYRHPKPGQENLKRFEMTPDKWYQRFLFLESI 153

Query: 168 AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 227
           A VPGMVGGM  H +SLR  +    WI+ LLEEA NERMHL+TF+++ KP ++ R ++  
Sbjct: 154 AGVPGMVGGMCRHLQSLRALKRDRAWIETLLEEAYNERMHLLTFLKMHKPGYFMRTMILL 213

Query: 228 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI-----ENVPAPAI 282
            QGVFFN +F+ YL+SP+  HR VGYLEEEA+ +YT  + ++D G +       V  P I
Sbjct: 214 GQGVFFNLFFMAYLMSPRICHRFVGYLEEEAVITYTRCITDIDAGRLPEWEGHKVKIPEI 273

Query: 283 ATDYWRLPPNSTLKDVVLVVRADEAHHRDVNH 314
           A DYW + PN T++D++  +RADEA H +VNH
Sbjct: 274 AIDYWHMGPNPTMRDLIEYIRADEAKHCEVNH 305


>gi|219664359|gb|ACL31211.1| alternative oxidase [Crassostrea gigas]
          Length = 332

 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 94/199 (47%), Positives = 127/199 (63%), Gaps = 11/199 (5%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFF--------QRRYGCRAMMLETVAAVPGMVGGML 178
           H  P  F DK+A  +VK LR   DL          ++++  R   LETVA VPGMV  M 
Sbjct: 117 HKPPEGFVDKLAFRSVKLLRSTFDLLTGFNWGERTEKKWVLRICFLETVAGVPGMVAAMT 176

Query: 179 LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 238
            H  SLRR +   GWI  LLEEAENERMHLMT +++ +P W  R+ V   QG F   + +
Sbjct: 177 RHLHSLRRLKRDHGWIHTLLEEAENERMHLMTALQLRQPSWLFRSGVIVSQGAFVTMFSI 236

Query: 239 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTL 295
            Y++SP+F HR VGYLEEEA+ +Y++ LK+++ G++   +   AP +A  YW+LP  +++
Sbjct: 237 AYMLSPRFCHRFVGYLEEEAVFTYSKCLKDIESGSLKHWQTKAAPDVAIRYWKLPETASM 296

Query: 296 KDVVLVVRADEAHHRDVNH 314
           KDVVL +RADEAHHR VNH
Sbjct: 297 KDVVLAIRADEAHHRVVNH 315


>gi|452002528|gb|EMD94986.1| hypothetical protein COCHEDRAFT_1168437 [Cochliobolus
           heterostrophus C5]
          Length = 356

 Score =  190 bits (483), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 100/235 (42%), Positives = 140/235 (59%), Gaps = 34/235 (14%)

Query: 127 HHAPTTFSDKMALWTVKSLRW------------PTDL-------------FFQRRYGCRA 161
           H    T SDK+AL  VK LRW            P D+               + +Y  R 
Sbjct: 96  HREAKTMSDKVALIAVKVLRWGLDRVTGYKHPKPVDVDTKDPVAARKQFAMTEEKYLIRN 155

Query: 162 MMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYE 221
           + LE+VA VPGMV GML H  S+RR +   GWI++LLEE+ NERMHL+ F+++ +P  + 
Sbjct: 156 VFLESVAGVPGMVAGMLRHLHSMRRMKRDNGWIESLLEESYNERMHLLVFLKMQRPGPFM 215

Query: 222 RALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVP 278
           R +V   QGVFFNA F  YL+SP+  HR +GYLEEEA+ +YT  +K+LD+G +   E + 
Sbjct: 216 RLMVLGAQGVFFNALFFAYLLSPRTVHRFIGYLEEEAVITYTRQIKDLDEGRLPKWEKLE 275

Query: 279 APAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 332
           AP IA DYW +P  + T++D++L +RADE+ HR+VNH   ++       +E P P
Sbjct: 276 APEIAIDYWHMPEGHRTMRDLLLYIRADESKHREVNHTFGNL-----DQKEDPNP 325


>gi|405968665|gb|EKC33714.1| Alternative oxidase, mitochondrial [Crassostrea gigas]
          Length = 304

 Score =  190 bits (483), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 95/199 (47%), Positives = 128/199 (64%), Gaps = 11/199 (5%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFF--------QRRYGCRAMMLETVAAVPGMVGGML 178
           H  P  F DK+A  +VK LR   DL          ++++  R   LETVA VPGMV  M 
Sbjct: 89  HKPPEGFVDKLAFRSVKLLRSTFDLLTGFNWGERTEKKWVLRICFLETVAGVPGMVAAMT 148

Query: 179 LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 238
            H  SLRR +   GWI  LLEEAENERMHLMT +++ +P W  R+ V   QG F   + +
Sbjct: 149 RHLHSLRRLKRDHGWIHTLLEEAENERMHLMTALQLRQPSWLFRSGVIVSQGAFVTMFSI 208

Query: 239 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIEN---VPAPAIATDYWRLPPNSTL 295
            YL+SP+F HR VGYLEEEA+ +Y++ LK+++ G++++     AP +A  YW+LP  +++
Sbjct: 209 AYLLSPRFCHRFVGYLEEEAVFTYSKCLKDIESGSLKHWQIKAAPDVAIRYWKLPETASM 268

Query: 296 KDVVLVVRADEAHHRDVNH 314
           KDVVL +RADEAHHR VNH
Sbjct: 269 KDVVLAIRADEAHHRVVNH 287


>gi|348682022|gb|EGZ21838.1| hypothetical protein PHYSODRAFT_488439 [Phytophthora sojae]
          Length = 305

 Score =  190 bits (483), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 102/227 (44%), Positives = 136/227 (59%), Gaps = 14/227 (6%)

Query: 101 DGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRR---- 156
           DG  WK     P    EA   I  + HH P    + +AL  VK+LR   DL    R    
Sbjct: 62  DGPTWKNPIPHPVYNLEAIDDIP-QTHHQPRKIHEYVALLGVKTLRLGFDLLSGYRGPGA 120

Query: 157 ------YGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMT 210
                 +  R ++LETVA VPGMV GM  H +SLR  +   GWI  LLEEAENERMHL+ 
Sbjct: 121 AMTVQDWLNRCLLLETVAGVPGMVVGMAHHLRSLRSLKRDSGWIHTLLEEAENERMHLLI 180

Query: 211 FMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELD 270
           FM + +P W  R +V A QGVFF A++L YL+SPK  HR VG+LEEEA+ +YT  L++++
Sbjct: 181 FMNMKQPGWGFRMMVLAAQGVFFPAFYLAYLVSPKTCHRFVGFLEEEAVKTYTNLLEDME 240

Query: 271 KGNIE---NVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNH 314
            G+++      AP I   Y+ LP ++ + D++  +RADEA+HRDVNH
Sbjct: 241 HGHLDEWCTTTAPLIGRSYYNLPEDAKVYDMIKCIRADEANHRDVNH 287


>gi|336363765|gb|EGN92138.1| AOX, alternative oxidase mitochondrial precursor [Serpula lacrymans
           var. lacrymans S7.3]
 gi|336382841|gb|EGO23991.1| alternative oxidase, AOX [Serpula lacrymans var. lacrymans S7.9]
          Length = 384

 Score =  190 bits (483), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 105/245 (42%), Positives = 139/245 (56%), Gaps = 30/245 (12%)

Query: 107 WNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL--------------- 151
           W  F P  + E   S+++  H    T SDK A   VK  RW  DL               
Sbjct: 95  WVLFHPVYSEEELKSVEVL-HREAKTISDKFACNLVKITRWGFDLASGYKHKPIPPNSNL 153

Query: 152 -----------FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEE 200
                        +R +  R + LETVA VPGMV  +L H  SLR      GWI  LLEE
Sbjct: 154 TLEELKKGGYILDERGWLRRILFLETVAGVPGMVAAVLRHLGSLRLMRRDSGWIHTLLEE 213

Query: 201 AENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 260
           AENERMHLMTFM + KP  + RA+V   QGVF+N +FL Y+ISP+  HR VGYLEEEA+ 
Sbjct: 214 AENERMHLMTFMTLRKPSLFFRAMVLGAQGVFYNLFFLSYMISPRTCHRFVGYLEEEAVL 273

Query: 261 SYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYAS 317
           +YT  ++E++ G +    ++ AP IA DYWRL P++ L DV+  VR+DE+ HR VNH  +
Sbjct: 274 TYTRCIEEIEAGRLPEWTDLSAPEIAKDYWRLAPDAKLLDVMYAVRSDESTHRFVNHSFA 333

Query: 318 DIHYQ 322
           +++ +
Sbjct: 334 NLNVK 338


>gi|390603194|gb|EIN12586.1| alternative oxidase [Punctularia strigosozonata HHB-11173 SS5]
          Length = 379

 Score =  190 bits (482), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 91/185 (49%), Positives = 125/185 (67%), Gaps = 3/185 (1%)

Query: 141 TVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEE 200
           TV+ LR    L    ++  RA+ LET+AAVPGMV   + H  SLR      GWI  LLEE
Sbjct: 147 TVEELRKQNYLMGPDQWLQRAIFLETIAAVPGMVAASIRHLNSLRLMRRDSGWIHTLLEE 206

Query: 201 AENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 260
           AENERMHLMTFM + +P  + R LV   QGVF+N +FL YL +PK  HR VGYLEEEA+ 
Sbjct: 207 AENERMHLMTFMALRRPGLWFRTLVMGAQGVFYNVFFLSYLFAPKVCHRFVGYLEEEAVL 266

Query: 261 SYTEFLKELDKGNIE---NVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYAS 317
           +YT  +++++ G +    ++PAP+IA DYWRLP +S L DV+  +R+DE +HR VNH  +
Sbjct: 267 TYTRCIQDIEAGRLPEWADMPAPSIAIDYWRLPQDSKLLDVIYAIRSDETNHRFVNHTLA 326

Query: 318 DIHYQ 322
           +++++
Sbjct: 327 NLNHK 331


>gi|408397324|gb|EKJ76470.1| hypothetical protein FPSE_03380 [Fusarium pseudograminearum CS3096]
          Length = 353

 Score =  190 bits (482), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 90/181 (49%), Positives = 121/181 (66%), Gaps = 11/181 (6%)

Query: 159 CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 218
            R + LE+VA VPGMVGGML H  SLRR +   GWI+ LLEE+ NERMHL+TFM++ +P 
Sbjct: 153 IRFIFLESVAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPG 212

Query: 219 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---- 274
           W+ + ++   QGVFFN+ F+ YLISPK  HR VGYLEEEA+H+YT  +KE++ GN+    
Sbjct: 213 WFMKMMIIGAQGVFFNSLFVSYLISPKIVHRFVGYLEEEAVHTYTRCIKEIEDGNLPKWS 272

Query: 275 -ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 332
                 P IA  YW++P  + T+KD++L +RADEA HR VNH   +++       E P P
Sbjct: 273 DPKFEIPDIAIQYWKMPKEHRTMKDLILYIRADEATHRGVNHTLGNLNQN-----EDPNP 327

Query: 333 L 333
            
Sbjct: 328 F 328


>gi|403375688|gb|EJY87819.1| Alternative oxidase isoform B [Oxytricha trifallax]
          Length = 273

 Score =  190 bits (482), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 98/204 (48%), Positives = 129/204 (63%), Gaps = 11/204 (5%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL--------FFQRRYGCRAMMLETVAAVPGMVGGML 178
           H  P  F D  A   V+  R   DL           +++  RA+ LETVA VPGMVGGM 
Sbjct: 43  HRKPDGFRDWFARTFVRFARGSFDLVSAYNEEKMSAQKWMTRAIFLETVAGVPGMVGGMT 102

Query: 179 LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 238
            H KSLR  +   GWI  LLEEAENERMHL  F+E+ KP    +A +   QGVF+N YF+
Sbjct: 103 RHLKSLRSLKPDHGWIHNLLEEAENERMHLFIFLELKKPTPLFKAAIILTQGVFYNLYFI 162

Query: 239 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTL 295
            Y++ PK+ HR VGYLEEEA+H+YT  LK+LD G+I     +PAP  A +Y+ L  N+ +
Sbjct: 163 SYMLFPKYCHRFVGYLEEEAVHTYTVMLKQLDNGSIPEWSELPAPQNAREYYNLSENAKI 222

Query: 296 KDVVLVVRADEAHHRDVNHYASDI 319
           +DV+L +RADE+ HR+VNH  +D+
Sbjct: 223 RDVILSIRADESIHREVNHRFADL 246


>gi|384252235|gb|EIE25711.1| threonyl-tRNA synthetase [Coccomyxa subellipsoidea C-169]
          Length = 1049

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 98/221 (44%), Positives = 137/221 (61%), Gaps = 14/221 (6%)

Query: 126  KHHAPTTFSDKMALWTVKSLRWPTDLFF-------QRRYGCRAMMLETVAAVPGMVGGML 178
            +H  P  +S+K   W V ++RW  D          + ++  R + LETVA VPGMVGGML
Sbjct: 830  RHKTPEKWSEKTGFWAVTAMRWSFDKITGYGPNMNEGKWLQRIVFLETVAGVPGMVGGML 889

Query: 179  LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 238
             H +SLR  E   GWI  LLEEAENERMHL+TF+++ +P    RA V   QGVFFN YF 
Sbjct: 890  RHMRSLRVMERDHGWIHTLLEEAENERMHLLTFLKLRQPGPLVRAGVLLTQGVFFNLYFF 949

Query: 239  GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---NVPAPAIATDYWRLPPNSTL 295
             Y++SPK  H  +GYLEEEA+ +YT  + ++D G +    + PAP +A  YW++  ++T+
Sbjct: 950  FYMLSPKHCHAFIGYLEEEAVKTYTHAIADIDNGKLPEWADKPAPDLAKFYWKMSEDATM 1009

Query: 296  KDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH 336
            +D++L VRADEA H  VNH  S++    +Q  ++P   G H
Sbjct: 1010 RDLLLNVRADEACHSHVNHTFSEL----KQSDDNPFVKGNH 1046


>gi|374619172|ref|ZP_09691706.1| alternative oxidase [gamma proteobacterium HIMB55]
 gi|374302399|gb|EHQ56583.1| alternative oxidase [gamma proteobacterium HIMB55]
          Length = 189

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 91/159 (57%), Positives = 116/159 (72%), Gaps = 1/159 (0%)

Query: 156 RYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHS-GGWIKALLEEAENERMHLMTFMEV 214
           RYG RA++LETVA VPGMV GM +H KSLR+ +   G  I+ LL EAENERMHLM F+E+
Sbjct: 24  RYGHRAVVLETVAGVPGMVAGMWVHLKSLRQAKTGYGPMIRELLAEAENERMHLMFFVEI 83

Query: 215 AKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI 274
           AKP W ERAL+   Q VF   Y + Y++SPK AH+M+ Y EEEA+ SYT +LKE++ G I
Sbjct: 84  AKPNWVERALILIAQLVFMAYYLVLYIVSPKTAHKMIHYFEEEAVRSYTSYLKEIETGKI 143

Query: 275 ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVN 313
            +VPAP +A DY+ LPP++ L D++L VRADE  H D N
Sbjct: 144 ADVPAPKLAIDYYDLPPDAKLSDMILKVRADEQVHADAN 182


>gi|402077745|gb|EJT73094.1| alternative oxidase [Gaeumannomyces graminis var. tritici
           R3-111a-1]
          Length = 346

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 100/240 (41%), Positives = 140/240 (58%), Gaps = 25/240 (10%)

Query: 114 EAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL--------------FFQRRYGC 159
           E  E  ++  +  H  P T  DK+A   V++ RW  D                 + ++  
Sbjct: 85  EMTEKQMAEVVPGHREPKTAGDKLAWALVRTSRWFMDRASAMSSDQLKGLKPLTEAQWLT 144

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
           R + LE++A VPGMV GML H  SLRR +   GWI+ LLEEA NERMHL+TF+++ +P W
Sbjct: 145 RYIFLESIAGVPGMVAGMLRHLHSLRRMKRDNGWIETLLEEAYNERMHLLTFLKMCEPGW 204

Query: 220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI----- 274
           + + L+   QGV+FNA F+ YLISPK  HR VGYLEEEA+H+YT  +KEL+ G +     
Sbjct: 205 FLKMLILGAQGVYFNALFVAYLISPKICHRFVGYLEEEAVHTYTRSIKELEAGQLPRWSD 264

Query: 275 ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPL 333
                P IA  YW +P  + T++D++L +RADEA+HR VNH   ++       +E P P 
Sbjct: 265 PGFKVPEIAVAYWGMPEGHRTMRDLLLYIRADEANHRGVNHTLGNL-----DQKEDPNPF 319


>gi|51701293|sp|Q9P429.1|AOX_VENIN RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|9454424|gb|AAF87802.1|AF279690_1 alternative oxidase [Venturia inaequalis]
          Length = 361

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 104/222 (46%), Positives = 134/222 (60%), Gaps = 29/222 (13%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFF------------------QRRYG-------CRA 161
           H     +SDK+AL  VK LRW  D                     Q+RYG        R 
Sbjct: 101 HRDTRNWSDKVALIAVKLLRWGLDTVSGYKHGKAQALHAQDPQEAQKRYGMTGKQYLVRN 160

Query: 162 MMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYE 221
           + LE+VA VPGMV GML H  S+RR +   GWI+ LLEE+ NERMHL+ F+++ +P W+ 
Sbjct: 161 VFLESVAGVPGMVAGMLRHLHSMRRMKRDHGWIETLLEESYNERMHLLIFLKLYEPGWFM 220

Query: 222 RALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVP 278
           R  V   QGVFFNA FL YLISP+  HR VGYLEEEA+ +YT  L +L+ G +   E + 
Sbjct: 221 RLAVLGAQGVFFNAMFLSYLISPRTCHRFVGYLEEEAVVTYTRELADLEAGKLPEWETLA 280

Query: 279 APAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDI 319
           AP IA DY+ LP  + T+KD++L VRADEA HR+VNH   ++
Sbjct: 281 APDIAVDYYNLPEGHRTMKDLLLHVRADEAKHREVNHTLGNL 322


>gi|342890501|gb|EGU89319.1| hypothetical protein FOXB_00272 [Fusarium oxysporum Fo5176]
          Length = 353

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 87/167 (52%), Positives = 118/167 (70%), Gaps = 6/167 (3%)

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
           R + LE+VA VPGMVGGML H  SLRR +   GWI+ LLEE+ NERMHL+TFM++ +P W
Sbjct: 154 RFIFLESVAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGW 213

Query: 220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI----- 274
           + + ++   QGVFFN+ F+ YLISPK  HR VGYLEEEA+H+YT  +KE++ GN+     
Sbjct: 214 FMKMMIIGAQGVFFNSLFVSYLISPKIVHRFVGYLEEEAVHTYTRCIKEIEDGNLPKWSD 273

Query: 275 ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIH 320
                P IA  YW++P  + T+KD++L +RADEA HR VNH   +++
Sbjct: 274 PKFQIPDIAIQYWKMPKEHRTMKDLILYIRADEATHRGVNHTLGNLN 320


>gi|395331045|gb|EJF63427.1| alternative oxidase [Dichomitus squalens LYAD-421 SS1]
          Length = 386

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 122/337 (36%), Positives = 168/337 (49%), Gaps = 33/337 (9%)

Query: 19  STEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKEQQREENVQTTGAAAAGGS 78
           S + A+RIL            +  P + S   S  +      ++ E+ +Q          
Sbjct: 6   SPKVASRILPINARALPLRRALLTPCMASAINSRRSFASSFPRRDEKVLQVAKTNEKSII 65

Query: 79  GNKDEKRIVSYWGVEAPKVNKDDGSEWK--WNCFRPWEAYEADLSIDLKKHHAPTTFSDK 136
           G   E   +     + P V      E +  W  F P  + E   S+++    A  TFSD+
Sbjct: 66  GPGAEGPHIKDLSPKTPVVVPSSTEELRGDWVLFHPVYSPEELRSVEVLFRDA-KTFSDR 124

Query: 137 MALWTVKSLRW-------------PTD--------------LFFQRRYGCRAMMLETVAA 169
           +A   VK  RW             PT+              L  + ++  R + LE++AA
Sbjct: 125 VAHTFVKIARWAFDFASGYKHKPLPTNAASMSLEELRNGGYLMDESQWLRRILFLESIAA 184

Query: 170 VPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQ 229
           VPGMV   L H +SLR      GWI  LLEEAENERMHLMTFM +  P    RA+V   Q
Sbjct: 185 VPGMVAAALRHLRSLRLMRRDHGWIHTLLEEAENERMHLMTFMTLKNPSRLFRAMVLGAQ 244

Query: 230 GVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---NVPAPAIATDY 286
           GVF+NA+FL YLISP   HR VG+LEEEA+ +YT  ++E++ G +    N+PAP IA DY
Sbjct: 245 GVFYNAFFLCYLISPSTCHRFVGHLEEEAVVTYTRCIQEIEAGRLPEWTNLPAPEIAKDY 304

Query: 287 WRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQG 323
           WRL P++   DVV  VR+DE+ HR VNH  + + Y+ 
Sbjct: 305 WRLGPDAKFLDVVYAVRSDESTHRFVNHSLASLKYES 341


>gi|302921940|ref|XP_003053363.1| hypothetical protein NECHADRAFT_98640 [Nectria haematococca mpVI
           77-13-4]
 gi|256734304|gb|EEU47650.1| hypothetical protein NECHADRAFT_98640 [Nectria haematococca mpVI
           77-13-4]
          Length = 357

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/180 (50%), Positives = 123/180 (68%), Gaps = 11/180 (6%)

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
           R + LE++A VPGMVGGML H  SLRR +   GWI+ LLEE+ NERMHL+TFM++ +P W
Sbjct: 158 RFIFLESIAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGW 217

Query: 220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE--NV 277
           + + ++   QGVFFN+ F+ YLISPK  HR VGYLEEEA+H+YT  +KE++ GN+   N 
Sbjct: 218 FMKMMIIGAQGVFFNSLFVSYLISPKIVHRFVGYLEEEAVHTYTRCIKEIEDGNLPKWND 277

Query: 278 PA---PAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPL 333
           P    P IA  YW++P  + T+KD++L +RADEA HR VNH   +++       E P P 
Sbjct: 278 PKFAIPDIAVQYWQMPKEHRTMKDLILYIRADEAVHRGVNHTLGNLNQS-----EDPNPF 332


>gi|215983208|gb|ACJ71742.1| alternative oxidase [Paecilomyces sp. J18]
          Length = 372

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 98/218 (44%), Positives = 134/218 (61%), Gaps = 22/218 (10%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVA 168
           H     +SD++AL  VK LRW  D                     + ++  R + LE+VA
Sbjct: 117 HREVRNWSDRVALMMVKLLRWGMDTVTGYKHPKKGKPLPPKFEMTEEKWLNRFLFLESVA 176

Query: 169 AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
            VPGMVGGML H +SLR      GWI++LLEEA NERMHL+TFM++A+P W+ R +V   
Sbjct: 177 GVPGMVGGMLRHLRSLRLMRRDNGWIESLLEEAYNERMHLLTFMKMAEPGWFMRLMVLGA 236

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 285
           QGVFFNA+FL YL SP+  HR VGYLEEEA+H+YT  +++L+ G +   +N+ AP IA  
Sbjct: 237 QGVFFNAFFLSYLCSPRTCHRFVGYLEEEAVHTYTRAIEDLEAGKLPKWQNMEAPEIAVQ 296

Query: 286 YWR-LPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQ 322
           YW  L     + D+ L +RADEA H +VNH   +++ +
Sbjct: 297 YWNMLEGKPKMLDLPLYIRADEAKHPEVNHTMGNLNQK 334


>gi|83774462|dbj|BAE64585.1| unnamed protein product [Aspergillus oryzae RIB40]
          Length = 310

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 99/216 (45%), Positives = 136/216 (62%), Gaps = 22/216 (10%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVA 168
           H     +SD+MAL TV+ LRW  DL                    + ++  R + LE+VA
Sbjct: 75  HRNAKDWSDRMALGTVRFLRWGMDLVTGYHHSHPRDAHSPRFRMTEEKWITRFIFLESVA 134

Query: 169 AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
            VPGMV  ML H KSLRR     GWI+ LLEEA NERMHL+TF+++++P      +V A 
Sbjct: 135 GVPGMVAAMLRHLKSLRRMRRDYGWIETLLEEAYNERMHLLTFLKLSQPGPAMYFMVLAA 194

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 285
           Q VFF  + L YLISP+  HR VGYLEEEA+ +YT+ ++ELDKGN+    N+ APA+A  
Sbjct: 195 QCVFFTGFSLAYLISPRICHRFVGYLEEEAVITYTKAIQELDKGNLPLWSNMEAPAMAIK 254

Query: 286 YWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIH 320
           YW++P    +++ ++L VRADEA+HRDVNH   +++
Sbjct: 255 YWQMPEGQRSIRSLLLCVRADEANHRDVNHTLGNLN 290


>gi|367023150|ref|XP_003660860.1| alternative oxidase [Myceliophthora thermophila ATCC 42464]
 gi|347008127|gb|AEO55615.1| alternative oxidase [Myceliophthora thermophila ATCC 42464]
          Length = 368

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 100/247 (40%), Positives = 137/247 (55%), Gaps = 35/247 (14%)

Query: 117 EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL------------------------F 152
           E +L      H  P T  D +A   V+  RW TD                          
Sbjct: 98  EEELLAVTPGHRQPKTVGDWVAWKLVRLARWATDFATGIGREQQVDMKNPTTSVTSQKPL 157

Query: 153 FQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFM 212
            + ++  R + LE++A VPGMVGGML H  SLRR +   GWI+ LLEE+ NERMHL+  +
Sbjct: 158 TEAQWLVRIIFLESIAGVPGMVGGMLRHLHSLRRLKRDNGWIETLLEESYNERMHLLVAL 217

Query: 213 EVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKG 272
            + KP W  + ++   QGVFFNA FL YLISPK +HR VGYLEEEA+H+YT  ++E++ G
Sbjct: 218 TLGKPGWLMKTMILGAQGVFFNAMFLSYLISPKISHRFVGYLEEEAVHTYTRLIREIENG 277

Query: 273 NI-----ENVPAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIHYQGRQL 326
           ++      +   P IA  YWR+P    T++D+ L +RADEA HR VNH  S++     + 
Sbjct: 278 DLPKWSDPSFTVPDIAVTYWRMPEGKRTMRDLFLYIRADEAVHRGVNHTLSNL-----KQ 332

Query: 327 RESPAPL 333
           +E P P 
Sbjct: 333 KEDPNPF 339


>gi|302847293|ref|XP_002955181.1| alternative oxidase [Volvox carteri f. nagariensis]
 gi|300259473|gb|EFJ43700.1| alternative oxidase [Volvox carteri f. nagariensis]
          Length = 219

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 93/161 (57%), Positives = 113/161 (70%), Gaps = 1/161 (0%)

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
           R + LETVA VPGMV GML H KSLR      GWI  LLEEAENERMHL+TF+E+ +P  
Sbjct: 43  RIIFLETVAGVPGMVAGMLRHLKSLRTMRRDHGWIHTLLEEAENERMHLITFLELRRPGP 102

Query: 220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI-ENVP 278
             RA V   QGVFFNAYFL YL+SP+  H  +G+LEEEA+ +YT  L E+D G + +  P
Sbjct: 103 LFRAAVIGAQGVFFNAYFLAYLLSPRTCHAFIGFLEEEAVKTYTHALAEIDAGRLWKGTP 162

Query: 279 APAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
           APAIA +YW LP  +T++D+VL VRADEA H  VNH  S +
Sbjct: 163 APAIAVEYWGLPRGATMRDLVLAVRADEACHAHVNHTFSKL 203


>gi|238492127|ref|XP_002377300.1| alternative oxidase AlxA, putative [Aspergillus flavus NRRL3357]
 gi|220695794|gb|EED52136.1| alternative oxidase AlxA, putative [Aspergillus flavus NRRL3357]
          Length = 320

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 99/216 (45%), Positives = 136/216 (62%), Gaps = 22/216 (10%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVA 168
           H     +SD+MAL TV+ LRW  DL                    + ++  R + LE+VA
Sbjct: 75  HRNAIDWSDRMALGTVRFLRWGMDLVTGYHHSHPRDAHSPRFRMTEEKWITRFIFLESVA 134

Query: 169 AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
            VPGMV  ML H KSLRR     GWI+ LLEEA NERMHL+TF+++++P      +V A 
Sbjct: 135 GVPGMVAAMLRHLKSLRRMRRDYGWIETLLEEAYNERMHLLTFLKLSQPGPAMYFMVLAA 194

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 285
           Q VFF  + L YLISP+  HR VGYLEEEA+ +YT+ ++ELDKGN+    N+ APA+A  
Sbjct: 195 QCVFFTGFSLAYLISPRICHRFVGYLEEEAVITYTKAIQELDKGNLPLWSNMEAPAMAIK 254

Query: 286 YWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIH 320
           YW++P    +++ ++L VRADEA+HRDVNH   +++
Sbjct: 255 YWQMPEGQRSIRSLLLCVRADEANHRDVNHTLGNLN 290


>gi|391865057|gb|EIT74348.1| alternative oxidase AlxA, putative [Aspergillus oryzae 3.042]
          Length = 320

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 99/216 (45%), Positives = 136/216 (62%), Gaps = 22/216 (10%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVA 168
           H     +SD+MAL TV+ LRW  DL                    + ++  R + LE+VA
Sbjct: 75  HRNAKDWSDRMALGTVRFLRWGMDLVTGYHHSHPRDAHSPRFRMTEEKWITRFIFLESVA 134

Query: 169 AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
            VPGMV  ML H KSLRR     GWI+ LLEEA NERMHL+TF+++++P      +V A 
Sbjct: 135 GVPGMVAAMLRHLKSLRRMRRDYGWIETLLEEAYNERMHLLTFLKLSQPGPAMYFMVLAA 194

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 285
           Q VFF  + L YLISP+  HR VGYLEEEA+ +YT+ ++ELDKGN+    N+ APA+A  
Sbjct: 195 QCVFFTGFSLAYLISPRICHRFVGYLEEEAVITYTKAIQELDKGNLPLWSNMEAPAMAIK 254

Query: 286 YWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIH 320
           YW++P    +++ ++L VRADEA+HRDVNH   +++
Sbjct: 255 YWQMPEGQRSIRSLLLCVRADEANHRDVNHTLGNLN 290


>gi|424863271|ref|ZP_18287184.1| alternative oxidase 1c [SAR86 cluster bacterium SAR86A]
 gi|400757892|gb|EJP72103.1| alternative oxidase 1c [SAR86 cluster bacterium SAR86A]
          Length = 200

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 90/186 (48%), Positives = 125/186 (67%), Gaps = 1/186 (0%)

Query: 134 SDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHS-GG 192
           SD  AL   K  R+  D FF +RYG RA++LETVA VPGMV G+ +H KSLR+ +   G 
Sbjct: 13  SDAFALSMTKFFRFIADTFFAKRYGHRAVVLETVAGVPGMVAGVWMHFKSLRKMKVGYGE 72

Query: 193 WIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVG 252
            I+ +L EAENERMHLM F+E+AKP ++ER +V   Q +F   Y   Y+   + AHRM+G
Sbjct: 73  QIREMLAEAENERMHLMFFIEIAKPNYFERFIVLFSQMIFGLFYLFMYVFFTRTAHRMIG 132

Query: 253 YLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDV 312
           Y E+EA+ SYTE+L+ ++ G +EN+PAP +A  Y+ +  +S L D++  VRADE HH + 
Sbjct: 133 YFEDEAVKSYTEYLEMVESGKVENIPAPKLAISYYGIGSDSKLSDLIRCVRADEEHHSET 192

Query: 313 NHYASD 318
           NH  +D
Sbjct: 193 NHNYAD 198


>gi|260268365|dbj|BAI44020.1| alternative oxidase [Microdochium nivale]
          Length = 355

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 131/201 (65%), Gaps = 19/201 (9%)

Query: 151 LFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMT 210
           +  + ++  R + LE++A VPGMV GML H  SLR+ +   GWI+ LLEE+ NERMHLM 
Sbjct: 146 ILNESQWLIRFIFLESIAGVPGMVAGMLRHLHSLRKLKRDNGWIETLLEESYNERMHLMV 205

Query: 211 FMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELD 270
           FM + +P W+ + ++   QG++FNA FL YLISPK  HR VGYLEEEA+H+YT  +++++
Sbjct: 206 FMRLCEPGWFMKTMILGAQGIYFNALFLSYLISPKITHRFVGYLEEEAVHTYTTAIEQIE 265

Query: 271 KGNIE-----NVPAPAIATDYWRLPPN-STLKDVVLVVRADEAHHRDVNHYASDIH---- 320
            G++E     N  AP IA  YWR+P    T++D++L +RADEA HR VNH  S+++    
Sbjct: 266 AGHLEKWSSPNFQAPDIAISYWRMPEGRRTMRDLLLYIRADEACHRGVNHTLSNLNADDD 325

Query: 321 -------YQGRQLRESPAPLG 334
                  Y+G   RE+P P+ 
Sbjct: 326 PNPFVSEYKGE--REAPKPIA 344


>gi|302689549|ref|XP_003034454.1| hypothetical protein SCHCODRAFT_14899 [Schizophyllum commune H4-8]
 gi|300108149|gb|EFI99551.1| hypothetical protein SCHCODRAFT_14899 [Schizophyllum commune H4-8]
          Length = 378

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 103/244 (42%), Positives = 133/244 (54%), Gaps = 31/244 (12%)

Query: 107 WNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC------- 159
           W  F P    E   SI +  H  PT  SDK+A   VK  RW  DL    ++         
Sbjct: 88  WLLFHPVYKPEELKSIQVI-HQVPTKLSDKVAYRLVKLARWGFDLVSGYKHKALPADAHK 146

Query: 160 --------------------RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLE 199
                               R + LE++A VPGMV   L H +SLR      GWI   LE
Sbjct: 147 MTVQALRKDGFVLGPDGWLNRFLFLESIAGVPGMVAATLRHLQSLRLMRRDNGWIHTCLE 206

Query: 200 EAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAI 259
           EAENERMHLMTFM + K   + RAL+   QGVF+N +FL Y+I P  AHR VGYLEEEA+
Sbjct: 207 EAENERMHLMTFMTLRKHSIFFRALILGAQGVFYNLFFLTYMIMPAAAHRFVGYLEEEAV 266

Query: 260 HSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYA 316
            +Y+  +++++   +    N PAP IA DYWRLP N+T+ DV+  VRADE  HR VNH  
Sbjct: 267 RTYSHCIQDIESNLVPEWRNAPAPQIAIDYWRLPQNATMLDVIYAVRADETSHRFVNHSL 326

Query: 317 SDIH 320
           ++++
Sbjct: 327 ANLN 330


>gi|412992248|emb|CCO19961.1| alternative oxidase [Bathycoccus prasinos]
          Length = 408

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 123/335 (36%), Positives = 174/335 (51%), Gaps = 42/335 (12%)

Query: 25  RILAGQTNRHLSTFLV-RAPILGSRNRSTLALGGEKEQQREE---------NVQTTGAAA 74
           RI+ G+T+   S  +   +  + +R R T     + E++ ++         N  +T  AA
Sbjct: 35  RIVDGKTDVFRSAAISGTSSTMHARTRCTFHTNAKNEEEHQDSMKRMSKTRNFHSTSFAA 94

Query: 75  AGGSGNK--DEKRIVSY---------WGVEAPKVNKDD----GSEWKWNCFRPWEAYEAD 119
            G S +K  ++KR  +           G    +  KD+     S   +    P   Y+  
Sbjct: 95  GGVSTHKRAEKKRFSAEAATTSTEEEMGETDVRAKKDETKMKKSAQSYMLAHP--TYDFG 152

Query: 120 LSIDLK-KHHAPTTFSDKMALWTVKSLRWPTDL---------FFQRRYGCRAMMLETVAA 169
               LK KH  P    D ++++ V S R   D            + ++  R + LETVA 
Sbjct: 153 FIEQLKPKHRPPQGARDYVSMFAVWSARKGFDTITSYSHEKSLTKDQWLFRFIFLETVAG 212

Query: 170 VPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQ 229
           +PGMV GML H  SLR   H  GWI  LLEEAENERMHLMTF+ + +P  + RA V A Q
Sbjct: 213 IPGMVAGMLRHMNSLRLLRHDNGWIHTLLEEAENERMHLMTFLNMKQPSIFFRAGVLAAQ 272

Query: 230 GVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE-----NVPAPAIAT 284
           GVFFNA+F  YLISP+  HR VGYLEEEA+ +YT  L ++D G  +        AP +A 
Sbjct: 273 GVFFNAFFFSYLISPRTCHRFVGYLEEEAVRTYTHALNDIDSGGTDARQWAKERAPKLAI 332

Query: 285 DYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
           +YW++  ++T++DV+L VRADEA H  VNH  S +
Sbjct: 333 EYWKMDEDATIRDVLLAVRADEASHAHVNHTFSSM 367


>gi|85106053|ref|XP_962086.1| alternative oxidase, mitochondrial precursor [Neurospora crassa
           OR74A]
 gi|28923681|gb|EAA32850.1| alternative oxidase, mitochondrial precursor [Neurospora crassa
           OR74A]
          Length = 362

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 100/247 (40%), Positives = 141/247 (57%), Gaps = 35/247 (14%)

Query: 117 EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL------------------------F 152
           E +++  + +H  P T  D +A   V+  RW TD+                         
Sbjct: 91  EEEMTSVVPEHRKPETVGDWLAWKLVRICRWATDIATGIRPEQQVDKHHPTTATSADKPL 150

Query: 153 FQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFM 212
            + ++  R + LE++A VPGMV GML H  SLRR +   GWI+ LLEE+ NERMHL+TFM
Sbjct: 151 TEAQWLVRFIFLESIAGVPGMVAGMLRHLHSLRRLKRDNGWIETLLEESYNERMHLLTFM 210

Query: 213 EVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKG 272
           ++ +P    + L+   QGVFFNA FL YLISPK  HR VGYLEEEA+H+YT  ++E+++G
Sbjct: 211 KMCEPGLLMKTLILGAQGVFFNAMFLSYLISPKITHRFVGYLEEEAVHTYTRCIREIEEG 270

Query: 273 NI-----ENVPAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIHYQGRQL 326
           ++     E    P +A  YWR+P    T+KD++  +RADEA HR VNH  S++       
Sbjct: 271 HLPKWSDEKFEIPEMAVRYWRMPEGKRTMKDLIHYIRADEAVHRGVNHTLSNL-----DQ 325

Query: 327 RESPAPL 333
           +E P P 
Sbjct: 326 KEDPNPF 332


>gi|451852964|gb|EMD66258.1| hypothetical protein COCSADRAFT_188646 [Cochliobolus sativus
           ND90Pr]
          Length = 357

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 99/235 (42%), Positives = 140/235 (59%), Gaps = 34/235 (14%)

Query: 127 HHAPTTFSDKMALWTVKSLRW------------PTDL-------------FFQRRYGCRA 161
           H    T SDK+AL  VK LRW            P D+               + +Y  R 
Sbjct: 97  HREAKTMSDKVALIAVKVLRWGLDRVTGYKHPKPVDVDAKDPVAARKQFAMTEEKYLIRN 156

Query: 162 MMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYE 221
           + LE+VA VPGMV GML H  S+RR +   GWI++LLEE+ NERMHL+ F+++ +P  + 
Sbjct: 157 VFLESVAGVPGMVAGMLRHLHSMRRMKRDNGWIESLLEESYNERMHLLVFLKMQRPGPFM 216

Query: 222 RALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVP 278
           R +V   QGVF NA F  YL+SP+  HR +GYLEEEA+ +YT  +K+LD+G +   E + 
Sbjct: 217 RLMVLGAQGVFCNALFFAYLLSPRTVHRFIGYLEEEAVITYTRQIKDLDEGRLPKWEKME 276

Query: 279 APAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 332
           AP IA DYW++P  + T++D++L +RADE+ HR+VNH   ++       +E P P
Sbjct: 277 APEIAVDYWQMPEGHRTMRDLLLYIRADESKHREVNHTFGNL-----DQKEDPNP 326


>gi|3023302|sp|Q01355.1|AOX_NEUCR RecName: Full=Alternative oxidase, mitochondrial; Short=ALTOX;
           Flags: Precursor
 gi|1161144|gb|AAC37481.1| alternative oxidase [Neurospora crassa]
 gi|24061748|gb|AAN39882.1| alternative oxidase [Neurospora crassa]
          Length = 362

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 100/247 (40%), Positives = 141/247 (57%), Gaps = 35/247 (14%)

Query: 117 EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL------------------------F 152
           E +++  + +H  P T  D +A   V+  RW TD+                         
Sbjct: 91  EEEMTSVVPEHRKPETVGDWLAWKLVRICRWATDIATGIRPEQQVDKHHPTTATSADKPL 150

Query: 153 FQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFM 212
            + ++  R + LE++A VPGMV GML H  SLRR +   GWI+ LLEE+ NERMHL+TFM
Sbjct: 151 TEAQWLVRFIFLESIAGVPGMVAGMLRHLHSLRRLKRDNGWIETLLEESYNERMHLLTFM 210

Query: 213 EVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKG 272
           ++ +P    + L+   QGVFFNA FL YLISPK  HR VGYLEEEA+H+YT  ++E+++G
Sbjct: 211 KMCEPGLLMKTLILGAQGVFFNAMFLSYLISPKITHRFVGYLEEEAVHTYTRCIREIEEG 270

Query: 273 NI-----ENVPAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIHYQGRQL 326
           ++     E    P +A  YWR+P    T+KD++  +RADEA HR VNH  S++       
Sbjct: 271 HLPKWSDEKFEIPEMAVRYWRMPEGKRTMKDLIHYIRADEAVHRGVNHTLSNL-----DQ 325

Query: 327 RESPAPL 333
           +E P P 
Sbjct: 326 KEDPNPF 332


>gi|346978317|gb|EGY21769.1| alternative oxidase [Verticillium dahliae VdLs.17]
          Length = 354

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 100/253 (39%), Positives = 142/253 (56%), Gaps = 36/253 (14%)

Query: 112 PWEAY-EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL------------------- 151
           P E Y EAD+   +  H  P T+ D  A   V+  RW  D                    
Sbjct: 82  PHEGYSEADMLAVVPGHRVPETWGDWAAWKFVRVARWTMDRATGLKPEQQVDKKNPTTAV 141

Query: 152 -----FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERM 206
                  + ++  R + LE++A VPGMV GML H  SLRR +   GWI+ LLEE+ NERM
Sbjct: 142 VANEPLTEAQWLVRFIFLESIAGVPGMVAGMLRHLGSLRRMKRDNGWIETLLEESYNERM 201

Query: 207 HLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFL 266
           HL+TFM++++P W+ + ++   QGVFFN  FL YL+SPK  HR VGYLEEEA+H+Y+  +
Sbjct: 202 HLLTFMKMSEPGWFMKVMLIGAQGVFFNGMFLSYLVSPKITHRFVGYLEEEAVHTYSRCI 261

Query: 267 KELDKGNI-----ENVPAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIH 320
           +E+++G +      N   P +A  YW +P    T++D++L +RADEA HR VNH  S+++
Sbjct: 262 REIEEGQLPKWSDPNFNIPDLAVQYWNIPEGKRTMRDLILYIRADEAVHRGVNHTLSNLN 321

Query: 321 YQGRQLRESPAPL 333
                  E P P 
Sbjct: 322 QN-----EDPNPF 329


>gi|336470634|gb|EGO58795.1| mitochondrial Alternative oxidase [Neurospora tetrasperma FGSC
           2508]
 gi|350291699|gb|EGZ72894.1| mitochondrial alternative oxidase [Neurospora tetrasperma FGSC
           2509]
          Length = 362

 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 100/247 (40%), Positives = 141/247 (57%), Gaps = 35/247 (14%)

Query: 117 EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL------------------------F 152
           E +++  + +H  P T  D +A   V+  RW TD+                         
Sbjct: 91  EEEMTSVVPEHRKPETVGDWLAWKLVRICRWATDIATGIRPEQQVDKHHPTTATSADKPL 150

Query: 153 FQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFM 212
            + ++  R + LE++A VPGMV GML H  SLRR +   GWI+ LLEE+ NERMHL+TFM
Sbjct: 151 TEAQWLVRFIFLESIAGVPGMVAGMLRHLHSLRRLKRDNGWIETLLEESYNERMHLLTFM 210

Query: 213 EVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKG 272
           ++ +P    + L+   QGVFFNA FL YLISPK  HR VGYLEEEA+H+YT  ++E+++G
Sbjct: 211 KMCEPGLLMKTLILGAQGVFFNAMFLSYLISPKITHRFVGYLEEEAVHTYTRCIREIEEG 270

Query: 273 NI-----ENVPAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIHYQGRQL 326
           ++     E    P +A  YWR+P    T+KD++  +RADEA HR VNH  S++       
Sbjct: 271 HLPKWRDEKFEIPEMAVRYWRMPEGKRTMKDLIHYIRADEAVHRGVNHTLSNL-----DQ 325

Query: 327 RESPAPL 333
           +E P P 
Sbjct: 326 KEDPNPF 332


>gi|336260284|ref|XP_003344938.1| hypothetical protein SMAC_08419 [Sordaria macrospora k-hell]
 gi|380087699|emb|CCC14107.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 375

 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 99/221 (44%), Positives = 132/221 (59%), Gaps = 30/221 (13%)

Query: 124 LKKHHAPTTFSDKMALWTVKSLRWPTDL------------------------FFQRRYGC 159
           +  H  P TF D +A   V++ R+  DL                          +R++  
Sbjct: 106 VPSHREPRTFGDWIAWKIVRTCRFWMDLVTGMRPEQQVDSKNPTTALAASKPLTERQWLV 165

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
           R + LE++A VPGMV G L H +S+RRF+   GWIK+LLEE+ NERMHL+TF+E+ KP W
Sbjct: 166 RFIFLESIAGVPGMVAGSLRHLQSIRRFQPDQGWIKSLLEESYNERMHLLTFLEMYKPGW 225

Query: 220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---- 275
           + R +V   QGVF+NA F+ YL SPK  HR VGYLEEEA+H+YT  L ELD G ++    
Sbjct: 226 FMRLVVLGAQGVFYNAMFISYLFSPKICHRFVGYLEEEAVHTYTRCLLELDHGCLKKWSD 285

Query: 276 -NVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNH 314
                P +A  YW +P  + T+KD++L VRADEA HR VNH
Sbjct: 286 PKFRIPDLAVRYWNMPEGHRTMKDLILYVRADEASHRGVNH 326


>gi|159472945|ref|XP_001694605.1| alternative oxidase, isoform 1 [Chlamydomonas reinhardtii]
 gi|11245480|gb|AAG33633.1|AF314254_1 alternative oxidase 1 [Chlamydomonas reinhardtii]
 gi|9027543|gb|AAC05743.2| alternative oxidase [Chlamydomonas reinhardtii]
 gi|158276829|gb|EDP02600.1| alternative oxidase, isoform 1 [Chlamydomonas reinhardtii]
          Length = 360

 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 94/204 (46%), Positives = 126/204 (61%), Gaps = 10/204 (4%)

Query: 127 HHAPTTFSDKMALWTVKSLRW---------PTDLFFQRRYGCRAMMLETVAAVPGMVGGM 177
           H  P      + L T++  R+         PT    + ++  R + LETVA  PGMV GM
Sbjct: 141 HVTPQKLHQHVGLRTIQVFRYLFDKATGYTPTGSMTEAQWLRRMIFLETVAGCPGMVAGM 200

Query: 178 LLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYF 237
           L H KSLR      GWI  LLEEAENERMHL+TF+++ +P    RA+V   QGVFFNAYF
Sbjct: 201 LRHLKSLRSMSRDRGWIHTLLEEAENERMHLITFLQLRQPGPAFRAMVILAQGVFFNAYF 260

Query: 238 LGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI-ENVPAPAIATDYWRLPPNSTLK 296
           + YL+SP+  H  VG+LEEEA+ +YT  L E+D G + ++ PAP +A  YW L P + ++
Sbjct: 261 IAYLLSPRTCHAFVGFLEEEAVKTYTHALVEIDAGRLWKDTPAPPVAVQYWGLKPGANMR 320

Query: 297 DVVLVVRADEAHHRDVNHYASDIH 320
           D++L VRADEA H  VNH  S ++
Sbjct: 321 DLILAVRADEACHAHVNHTLSQLN 344


>gi|71609886|dbj|BAE16577.1| alternative oxidase [Trypanosoma congolense]
          Length = 323

 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 99/234 (42%), Positives = 133/234 (56%), Gaps = 18/234 (7%)

Query: 118 ADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC--------RAMMLETVAA 169
           AD+      H  P    D +A   V++ RW  D F   R+G         R + LETVA 
Sbjct: 68  ADVENVAITHKKPNGLVDTLAYRGVRTCRWAFDTFSLYRFGSLTEGKVINRCLFLETVAG 127

Query: 170 VPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQ 229
           VPGMVGGML H KSLR      GWI  LL EAENERMHLMTF+E+ +P +  R  +   Q
Sbjct: 128 VPGMVGGMLRHLKSLRYMTRDKGWINTLLVEAENERMHLMTFIELRQPGFTFRVSIIVTQ 187

Query: 230 GVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPA--PAIATDYW 287
            + +      Y+ISP+F HR VGYLEEEA+ +YT  L+ +D+G +    +  P +A  YW
Sbjct: 188 AIMYLFLLTAYIISPRFVHRFVGYLEEEAVITYTSILRAIDEGRLRPTKSDVPEVARVYW 247

Query: 288 RLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ--------LRESPAPL 333
            L  ++T +D++ V+RADEA HR VNH  +D+H    Q        L+++PA L
Sbjct: 248 NLSKDATFRDLINVIRADEAEHRVVNHTFADMHEHHLQNSVNPFVVLKKNPAEL 301


>gi|336269921|ref|XP_003349720.1| alternative oxidase [Sordaria macrospora k-hell]
          Length = 337

 Score =  187 bits (475), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 99/223 (44%), Positives = 137/223 (61%), Gaps = 12/223 (5%)

Query: 117 EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGG 176
           E +++  + +H  P T  D +A   V+  R    L  + ++  R + LE++A VPGMV G
Sbjct: 91  EKEMTSVVPEHRKPETVGDWLAWKLVRICRADKPLT-EAQWLVRFIFLESIAGVPGMVAG 149

Query: 177 MLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAY 236
           ML H  SLRR +   GWI+ LLEE+ NERMHL+TFM++ +P    + L+   QGVFFNA 
Sbjct: 150 MLRHLHSLRRLKRDNGWIETLLEESYNERMHLLTFMKMCEPGLLMKTLILGAQGVFFNAM 209

Query: 237 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI-----ENVPAPAIATDYWRLPP 291
           FL YLISPK  HR VGYLEEEA+H+YT  + E+++G++     E    P +A  YWR+P 
Sbjct: 210 FLSYLISPKITHRFVGYLEEEAVHTYTRCINEIEEGHLPKWRDERFQIPEMAVRYWRMPE 269

Query: 292 NS-TLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPL 333
              T+KD++  VRADEA HR VNH  S++       +E P P 
Sbjct: 270 GKRTMKDLIYYVRADEAVHRGVNHTLSNL-----DQKEDPNPF 307


>gi|62548351|gb|AAX86821.1| putative alternative oxidase [Actinidia deliciosa]
          Length = 107

 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 86/107 (80%), Positives = 96/107 (89%)

Query: 172 GMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGV 231
           GMVGGMLLH +SLR+FEHSGGWIKALLEEAENERMHLMT +E+ KPKWYER LV  VQGV
Sbjct: 1   GMVGGMLLHLRSLRKFEHSGGWIKALLEEAENERMHLMTMVELVKPKWYERILVLTVQGV 60

Query: 232 FFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVP 278
           FFNA+F  YL+SPK AHR+VGYLEEEAIHSYTE+LK++D G IENVP
Sbjct: 61  FFNAFFALYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGKIENVP 107


>gi|380488128|emb|CCF37588.1| alternative oxidase [Colletotrichum higginsianum]
          Length = 235

 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 89/181 (49%), Positives = 120/181 (66%), Gaps = 11/181 (6%)

Query: 159 CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 218
            R + LE++A VPGMV GML H  SLRR +   GWI++LLEE+ NERMHL+TFM++++P 
Sbjct: 35  VRFIFLESIAGVPGMVAGMLRHLGSLRRMKRDNGWIESLLEESFNERMHLLTFMKMSEPG 94

Query: 219 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---- 274
           W+ + ++   QGVFFN  FL YLI+PK  HR VGYLEEEA+H+YT  L E+D G +    
Sbjct: 95  WFMKLMILGAQGVFFNGMFLSYLIAPKITHRFVGYLEEEAVHTYTRCLYEIDLGLLPKWS 154

Query: 275 -ENVPAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 332
             N   P IA  YWR+P    T+KD+++ +RADEA HR VNH   +++      +E P P
Sbjct: 155 DPNFTIPDIAVQYWRIPEGKRTMKDLIMYIRADEAVHRGVNHTLGNLNQ-----KEDPNP 209

Query: 333 L 333
            
Sbjct: 210 F 210


>gi|159490736|ref|XP_001703329.1| alternative oxidase [Chlamydomonas reinhardtii]
 gi|9930474|gb|AAG02081.1|AF285187_1 alternative oxidase [Chlamydomonas reinhardtii]
 gi|11245482|gb|AAG33634.1|AF314255_1 alternative oxidase 2 [Chlamydomonas reinhardtii]
 gi|158280253|gb|EDP06011.1| alternative oxidase [Chlamydomonas reinhardtii]
          Length = 347

 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 107/274 (39%), Positives = 153/274 (55%), Gaps = 14/274 (5%)

Query: 55  LGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWE 114
           +GG      ++  Q  GA  +  S +     +  + G++AP    DD  E    C+RP  
Sbjct: 63  VGGAGLSHVKDAAQAFGANQSSSSPSFATSGVAPHPGMKAPSPPTDDEVE---ACWRP-- 117

Query: 115 AYEADLSIDLKKHH-APTTFSDKMALWTVKSLRWPTDLFF-------QRRYGCRAMMLET 166
            Y+      +K  H  P     ++    + + RW  D          + ++  R + LET
Sbjct: 118 VYDTAYLEKVKPFHITPERLYQRIGFRAIMAARWTFDKLTGYGPNMTEAKWLQRMIFLET 177

Query: 167 VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 226
           +A VPGMV G+L H KSLR  +   GWI  LL+EAENERMHL+TF E+ KP    RA + 
Sbjct: 178 IAGVPGMVAGVLRHLKSLRSMKRDHGWIHTLLQEAENERMHLLTFFELRKPGPLFRASII 237

Query: 227 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI-ENVPAPAIATD 285
             QGVF+N YF+GYL+SP+  H  VG+LEEEA+ +YT  L+E+D G + +   AP IA +
Sbjct: 238 VAQGVFWNLYFIGYLVSPRTCHAAVGFLEEEAVKTYTHALQEIDAGRLWKGKVAPPIACE 297

Query: 286 YWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
           YW L P ++++D++L VRADEA H  VNH  S +
Sbjct: 298 YWGLKPGASMRDLILAVRADEACHAHVNHTLSGL 331


>gi|156392184|ref|XP_001635929.1| predicted protein [Nematostella vectensis]
 gi|156223027|gb|EDO43866.1| predicted protein [Nematostella vectensis]
          Length = 175

 Score =  186 bits (473), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 88/161 (54%), Positives = 112/161 (69%), Gaps = 3/161 (1%)

Query: 163 MLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYER 222
           MLETVA VPGM+G M  H  SLRR     GWI  LLEEAENERMHLMT +E+ +P    R
Sbjct: 1   MLETVAGVPGMIGAMTRHFNSLRRLTRDHGWIHTLLEEAENERMHLMTALELKRPGILFR 60

Query: 223 ALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPA 279
            ++ A QGVF N +F+ YL SP+F HR VGYLEEEA+ +YT  L+ +D G +     + A
Sbjct: 61  GVILAAQGVFVNMFFIAYLTSPRFCHRFVGYLEEEAVKTYTYCLECIDNGKLPTWNTLKA 120

Query: 280 PAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIH 320
           P IA++YW+L  ++ ++DV+L +RADEAHHR VNH  S IH
Sbjct: 121 PKIASNYWKLKEDAVMRDVILAIRADEAHHRVVNHTLSSIH 161


>gi|429847992|gb|ELA23528.1| alternative oxidase [Colletotrichum gloeosporioides Nara gc5]
          Length = 356

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/181 (48%), Positives = 122/181 (67%), Gaps = 11/181 (6%)

Query: 159 CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 218
            R + LE++A VPGMV GML H  SLRR +   GWI+ LLEE+ NERMHL+TFM++++P 
Sbjct: 156 VRFIFLESIAGVPGMVAGMLRHLGSLRRMKRDNGWIETLLEESFNERMHLLTFMKMSEPG 215

Query: 219 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---- 274
           W+ + ++   QGVFFN+ FL YL+SPK  HR VGYLEEEA+H+YT  + E+D+G +    
Sbjct: 216 WFMKTMILGAQGVFFNSMFLSYLVSPKITHRFVGYLEEEAVHTYTRCIHEIDQGLLPKWS 275

Query: 275 -ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 332
                 P IA  YW++P  + T+KD+++ +RADEA HR VNH  S+++      +E P P
Sbjct: 276 DPKFEIPDIAVQYWKIPEGHRTMKDLIMYIRADEAVHRGVNHTLSNLNQ-----KEDPNP 330

Query: 333 L 333
            
Sbjct: 331 F 331


>gi|345565383|gb|EGX48333.1| hypothetical protein AOL_s00080g303 [Arthrobotrys oligospora ATCC
           24927]
          Length = 360

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 92/233 (39%), Positives = 139/233 (59%), Gaps = 30/233 (12%)

Query: 114 EAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL---------------------- 151
           E   AD+ I    H     FSD++A+  V+ LR   D+                      
Sbjct: 90  EKQMADIEI---AHRKARNFSDRIAINAVRFLRGMFDIATGYKHDPKIASGEKSPKEETQ 146

Query: 152 --FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 209
               ++++  R + LE++A VPG V G L H KS+R      GWI+ LLEE  NERMHL+
Sbjct: 147 FAMTEKKWMVRFIFLESIAGVPGFVAGTLRHLKSIRSLRRDNGWIETLLEEGYNERMHLL 206

Query: 210 TFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKEL 269
           TF+++ +P  + R ++   QGVF+NA+FL YL+SP+  HR VGYLEEEA+ +YT  + ++
Sbjct: 207 TFLKLHQPGLFMRLMIIGAQGVFYNAFFLSYLLSPRTCHRFVGYLEEEAVITYTRAISDI 266

Query: 270 DKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
           D G +   EN+ AP IA DYW++ P ++++D++L +RADEA HR+VNH  +++
Sbjct: 267 DAGKLPGFENMKAPQIAVDYWKMNPGASIRDMLLYIRADEAKHREVNHTLANL 319


>gi|403416825|emb|CCM03525.1| predicted protein [Fibroporia radiculosa]
          Length = 341

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/279 (39%), Positives = 151/279 (54%), Gaps = 33/279 (11%)

Query: 73  AAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWK--WNCFRPWEAYEADLSIDLKKHHAP 130
           A  G  G     ++ +   V+   V+    S +K  W  F P    E   S+D+  H   
Sbjct: 19  ATVGVEGLHKRDKLPTQELVKEDAVSTVPSSTFKGDWVLFHPVYTQEELKSVDVL-HREA 77

Query: 131 TTFSDKMALWTVKSLRWPTDL---------------------------FFQRRYGCRAMM 163
            + SDK+A   V+ LRW  DL                             ++++  R + 
Sbjct: 78  KSVSDKIAWTFVRLLRWGFDLASGYRHKPLPPNYKNMSLEALRKGGYIMNEKQWLRRILF 137

Query: 164 LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERA 223
           LE++A VPGMV   L H KSLR  +   GWI  LLEEAENERMHLMTFM + KP    RA
Sbjct: 138 LESIAGVPGMVAATLRHLKSLRVMKRDSGWIHTLLEEAENERMHLMTFMVLRKPGIIFRA 197

Query: 224 LVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIEN---VPAP 280
           +V   QGVF+NA+F  YL+SP+  HR VG+LEEEA+ +Y+  + E++ G + N   +PAP
Sbjct: 198 MVIGAQGVFYNAFFFCYLLSPRTCHRFVGHLEEEAVLTYSRCIDEVEAGRLPNWSELPAP 257

Query: 281 AIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
            IA DYWRL  N+ L DV+  VR+DE+ HR VNH  +++
Sbjct: 258 EIAKDYWRLESNAKLLDVLYAVRSDESTHRFVNHSLANL 296


>gi|51701284|sp|Q8J1Z2.1|AOX_GELSS RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|24061746|gb|AAN39884.1| alternative oxidase [Gelasinospora sp. S23]
          Length = 362

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 99/247 (40%), Positives = 140/247 (56%), Gaps = 35/247 (14%)

Query: 117 EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL------------------------F 152
           E ++   + +H  P T  D +A   V+  RW TD+                         
Sbjct: 91  EEEMISVVPEHRKPETVGDWLAWKLVRICRWGTDIATGIRPEQQVDKNHPTTATSADKPL 150

Query: 153 FQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFM 212
            + ++  R + LE++A VPGMV GML H  SLRR +   GWI+ LLEE+ NERMHL+TFM
Sbjct: 151 TEAQWLVRFIFLESIAGVPGMVAGMLRHLHSLRRLKRDNGWIETLLEESYNERMHLLTFM 210

Query: 213 EVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKG 272
           ++ +P    + L+   QGVFFNA FL YL+SPK  HR VGYLEEEA+H+YT  ++E+++G
Sbjct: 211 KMCEPGLLMKTLILGAQGVFFNAMFLSYLVSPKITHRFVGYLEEEAVHTYTRCIREIEEG 270

Query: 273 NI-----ENVPAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIHYQGRQL 326
           ++     E    P +A  YWR+P    T+KD++  +RADEA HR VNH  S++       
Sbjct: 271 HLPKWSDERFEIPEMAVRYWRMPEGKRTMKDLIYYIRADEAVHRGVNHTLSNL-----DQ 325

Query: 327 RESPAPL 333
           +E P P 
Sbjct: 326 KEDPNPF 332


>gi|342184354|emb|CCC93836.1| putative alternative oxidase [Trypanosoma congolense IL3000]
          Length = 323

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 99/234 (42%), Positives = 133/234 (56%), Gaps = 18/234 (7%)

Query: 118 ADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC--------RAMMLETVAA 169
           AD+      H  P    D +A   V++ RW  D F   R+G         R + LETVA 
Sbjct: 68  ADVENVAITHKKPNGLVDTLAYRGVRTCRWAFDTFSLYRFGNLTEGKVINRCLFLETVAG 127

Query: 170 VPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQ 229
           VPGMVGGML H KSLR      GWI  LL EAENERMHLMTF+E+ +P +  R  +   Q
Sbjct: 128 VPGMVGGMLRHLKSLRYMTRDKGWINTLLIEAENERMHLMTFIELRQPGFAFRVSIIVTQ 187

Query: 230 GVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPA--PAIATDYW 287
            + +      Y+ISP+F HR VGYLEEEA+ +YT  L+ +D+G +    +  P +A  YW
Sbjct: 188 AIMYLFLLTAYIISPRFVHRFVGYLEEEAVITYTSILRAIDEGRLRPTKSDVPEVARVYW 247

Query: 288 RLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ--------LRESPAPL 333
            L  ++T +D++ V+RADEA HR VNH  +D+H    Q        L+++PA L
Sbjct: 248 NLSKDATFRDLINVIRADEAEHRVVNHTFADMHEHHLQNSVNPFVVLKKNPAEL 301


>gi|66359376|ref|XP_626866.1| AOX1,alternative oxidase, possible fungal or bacterial origin, 2
           transmembrane regions [Cryptosporidium parvum Iowa II]
 gi|35375829|gb|AAQ84544.1| alternative oxidase [Cryptosporidium parvum]
 gi|46228123|gb|EAK89022.1| AOX1,alternative oxidase, possible fungal or bacterial origin, 2
           transmembrane regions [Cryptosporidium parvum Iowa II]
          Length = 335

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 97/209 (46%), Positives = 130/209 (62%), Gaps = 10/209 (4%)

Query: 125 KKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYG------CRAMM-LETVAAVPGMVGGM 177
           K H  P  F DKM+ + V +LR   DL  + + G      CR ++ LETVA VPGMVG M
Sbjct: 126 KTHLCPNGFKDKMSYYLVIALRKSFDLLTRYKKGHNEYQWCRRIIFLETVAGVPGMVGAM 185

Query: 178 LLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFME-VAKPKWYERALVFAVQGVFFNAY 236
           L H  SLR+ +   GWI  LLEEAENERMHL+  ++ + KP    R  V   Q  F   Y
Sbjct: 186 LRHFSSLRKMKRDNGWIHTLLEEAENERMHLLISLQLINKPSILTRVSVIGTQFAFLIFY 245

Query: 237 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENV--PAPAIATDYWRLPPNST 294
            + Y+ISPK++HR VGYLEEEA+ +YT  ++E+DKG +      AP  A+ Y+ LP ++T
Sbjct: 246 TVFYIISPKYSHRFVGYLEEEAVSTYTHLIEEIDKGLLPGFERKAPKFASVYYGLPEDAT 305

Query: 295 LKDVVLVVRADEAHHRDVNHYASDIHYQG 323
           ++D+ L +R DE+HHRDVNH  +DI   G
Sbjct: 306 IRDLFLAMRRDESHHRDVNHNLADIRLNG 334


>gi|71609882|dbj|BAE16575.1| alternative oxidase [Trypanosoma congolense]
          Length = 323

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 99/234 (42%), Positives = 133/234 (56%), Gaps = 18/234 (7%)

Query: 118 ADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC--------RAMMLETVAA 169
           AD+      H  P    D +A   V++ RW  D F   R+G         R + LETVA 
Sbjct: 68  ADVENVAITHKKPNGLVDTLAYRGVRTCRWAFDTFSLYRFGNLTEGKMINRCLFLETVAG 127

Query: 170 VPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQ 229
           VPGMVGGML H KSLR      GWI  LL EAENERMHLMTF+E+ +P +  R  +   Q
Sbjct: 128 VPGMVGGMLRHLKSLRYMTRDKGWINTLLIEAENERMHLMTFIELRQPGFAFRVSIIVTQ 187

Query: 230 GVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPA--PAIATDYW 287
            + +      Y+ISP+F HR VGYLEEEA+ +YT  L+ +D+G +    +  P +A  YW
Sbjct: 188 AIMYLFLLTAYIISPRFVHRFVGYLEEEAVITYTSILRAIDEGRLRPTKSDVPEVARVYW 247

Query: 288 RLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ--------LRESPAPL 333
            L  ++T +D++ V+RADEA HR VNH  +D+H    Q        L+++PA L
Sbjct: 248 NLSKDATFRDLINVIRADEAEHRVVNHTFADMHEHHLQNSVNPFVVLKKNPAEL 301


>gi|299132133|ref|ZP_07025328.1| Alternative oxidase [Afipia sp. 1NLS2]
 gi|298592270|gb|EFI52470.1| Alternative oxidase [Afipia sp. 1NLS2]
          Length = 220

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 89/209 (42%), Positives = 132/209 (63%), Gaps = 4/209 (1%)

Query: 120 LSID---LKKHHAPTTFSDKMALWTVKSLRWPT-DLFFQRRYGCRAMMLETVAAVPGMVG 175
           L+ID   L +HH P    D++A    + + W   + FF  RYG + ++LETV AVP MV 
Sbjct: 2   LNIDKTNLLRHHTPERIPDRIAFGLARLVAWMAGNTFFNSRYGDQVIVLETVTAVPPMVV 61

Query: 176 GMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNA 235
             LLH K LRR    GGW++  ++EAE++R HLM F+ +AKP  +ER L+  VQG+F+NA
Sbjct: 62  ATLLHLKCLRRMLDDGGWVRTFMDEAESQRTHLMAFVALAKPNAWERFLIVLVQGIFYNA 121

Query: 236 YFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTL 295
           YF  YLIS   AHR+  Y  E+A+  Y+++L +++ G     PAPA+A  YW L P++ +
Sbjct: 122 YFFLYLISAGTAHRLAAYFAEQAVQGYSKYLSQIESGERAMQPAPALAIAYWALAPDAQV 181

Query: 296 KDVVLVVRADEAHHRDVNHYASDIHYQGR 324
           +D++  +  DEA HRD++H  +D   QG+
Sbjct: 182 RDMIASMLEDEAIHRDLHHAFADALMQGQ 210


>gi|40313538|dbj|BAD06177.1| alternative oxidase [Cryptosporidium parvum]
          Length = 335

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 97/209 (46%), Positives = 130/209 (62%), Gaps = 10/209 (4%)

Query: 125 KKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYG------CRAMM-LETVAAVPGMVGGM 177
           K H  P  F DKM+ + V +LR   DL  + + G      CR ++ LETVA VPGMVG M
Sbjct: 126 KTHLCPNGFKDKMSYYLVIALRKSFDLLTRYKKGHNEYQWCRRIIFLETVAGVPGMVGAM 185

Query: 178 LLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFME-VAKPKWYERALVFAVQGVFFNAY 236
           L H  SLR+ +   GWI  LLEEAENERMHL+  ++ + KP    R  V   Q  F   Y
Sbjct: 186 LRHFSSLRKMKRDNGWIHTLLEEAENERMHLLISLQLINKPSILTRVSVIGTQFAFLIFY 245

Query: 237 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENV--PAPAIATDYWRLPPNST 294
            + Y+ISPK++HR VGYLEEEA+ +YT  ++E+DKG +      AP  A+ Y+ LP ++T
Sbjct: 246 TVFYIISPKYSHRFVGYLEEEAVSTYTHLIEEIDKGLLPGFERKAPKFASVYYGLPEDAT 305

Query: 295 LKDVVLVVRADEAHHRDVNHYASDIHYQG 323
           ++D+ L +R DE+HHRDVNH  +DI   G
Sbjct: 306 IRDLFLAMRRDESHHRDVNHNLADIRLNG 334


>gi|71609884|dbj|BAE16576.1| alternative oxidase [Trypanosoma congolense]
          Length = 323

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 99/234 (42%), Positives = 133/234 (56%), Gaps = 18/234 (7%)

Query: 118 ADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC--------RAMMLETVAA 169
           AD+      H  P    D +A   V++ RW  D F   R+G         R + LETVA 
Sbjct: 68  ADVENVAITHKKPNGLVDTLAYRGVRTCRWAFDTFSLYRFGNLTEGKVINRCLFLETVAG 127

Query: 170 VPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQ 229
           VPGMVGGML H KSLR      GWI  LL EAENERMHLMTF+E+ +P +  R  +   Q
Sbjct: 128 VPGMVGGMLRHLKSLRYMTRDKGWINTLLIEAENERMHLMTFIELRQPGFAFRVSIIVTQ 187

Query: 230 GVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPA--PAIATDYW 287
            + +      Y+ISP+F HR VGYLEEEA+ +YT  L+ +D+G +    +  P +A  YW
Sbjct: 188 AIMYLFLLTAYIISPRFVHRFVGYLEEEAVITYTSILRAIDEGRLRPTKSDVPEVARVYW 247

Query: 288 RLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ--------LRESPAPL 333
            L  ++T +D++ V+RADEA HR VNH  +D+H    Q        L+++PA L
Sbjct: 248 NLSKDATFRDLINVIRADEAEHRVVNHTFADMHEHHLQNSVNPFVVLKKNPAEL 301


>gi|449300077|gb|EMC96090.1| hypothetical protein BAUCODRAFT_148923 [Baudoinia compniacensis
           UAMH 10762]
          Length = 457

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 84/165 (50%), Positives = 118/165 (71%), Gaps = 4/165 (2%)

Query: 154 QRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFME 213
           +R++  R + LE+VA VPGMV GML H  S+RR +   GWI+ LLEE+ NERMHL+TFM+
Sbjct: 246 ERQWMIRFIFLESVAGVPGMVAGMLRHLHSMRRMKRDNGWIETLLEESYNERMHLLTFMK 305

Query: 214 VAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN 273
           +A+P W+ R +V   QGVFFN  FL YL+SPK  HR VGYLEEEA+++Y+  L ++D G 
Sbjct: 306 MAEPGWFLRLMVLGAQGVFFNGMFLFYLVSPKTCHRFVGYLEEEAVYTYSRVLSDIDAGK 365

Query: 274 I---ENVPAPAIATDYWRLPPN-STLKDVVLVVRADEAHHRDVNH 314
           +     + AP IA  YW +P +  +++D++L +RADE+ HR+VNH
Sbjct: 366 LPMFSQMQAPDIAVKYWNMPEDHRSMRDLILYIRADESKHREVNH 410


>gi|320169629|gb|EFW46528.1| alternative oxidase isoform B [Capsaspora owczarzaki ATCC 30864]
          Length = 379

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 96/219 (43%), Positives = 133/219 (60%), Gaps = 15/219 (6%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYG--------CRAMMLETVAAVPGMVGGML 178
           HH P    D  A   +K +R   D+     +G         R + LETVAAVPGMVG M+
Sbjct: 162 HHKPDNLVDWTAFAAIKCIRLGFDVLSGFAFGERTPDKWLTRIIFLETVAAVPGMVGAMI 221

Query: 179 LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 238
            H +SLR      GWI  LLEEAENERMHL+T +++ +P    R  V AVQGV  N +F 
Sbjct: 222 RHLQSLRLMRRDHGWIHTLLEEAENERMHLLTALQLKQPSQLFRLAVLAVQGVMTNTFFF 281

Query: 239 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTL 295
            Y+++P+F HR VGYLEEEA+++YT+ L ++  G +   +   AP IA +YW+L   +T+
Sbjct: 282 LYILAPRFVHRFVGYLEEEAVYTYTKCLDDIKTGKLPEWKTGKAPEIAINYWKLDKAATM 341

Query: 296 KDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLG 334
           +DV+  +R+DEAHHR VNH  +++H    QL +S  P G
Sbjct: 342 EDVIYAIRSDEAHHRLVNHTFANLH----QLGQSRNPYG 376


>gi|340373435|ref|XP_003385247.1| PREDICTED: alternative oxidase, mitochondrial-like [Amphimedon
           queenslandica]
          Length = 308

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 94/218 (43%), Positives = 136/218 (62%), Gaps = 15/218 (6%)

Query: 117 EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFF------------QRRYGCRAMML 164
           E++L+     H  P+ F DK A  +V++LR+  D+F             ++++  R + L
Sbjct: 79  ESELNEVTITHVKPSLFVDKAAYASVQTLRFFFDVFSGYYIGKFRGTLNEKKWLTRIIFL 138

Query: 165 ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERAL 224
           ETVA VPGM+  ML H +SLR  +   GWI  LLEEAENERMHL+T + + KP +  R  
Sbjct: 139 ETVAGVPGMIAAMLRHLRSLRYLQRDHGWIHTLLEEAENERMHLLTALVLRKPGFLFRFA 198

Query: 225 VFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---NVPAPA 281
           V   QG+F   +   Y+ISPKF HR VGYLEEEA+ +YT  L+ +D+G+++      AP+
Sbjct: 199 VIGAQGIFVTLFSAAYIISPKFCHRFVGYLEEEAVKTYTHCLECIDRGDLKVWAKTAAPS 258

Query: 282 IATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
           I+  YW+LP  + ++DV+L +RADEAHH +VNH  S +
Sbjct: 259 ISQKYWQLPEGAMMRDVILAIRADEAHHCEVNHTLSSM 296


>gi|74272617|gb|ABA01104.1| mitochondrial alternative oxidase [Chlamydomonas incerta]
          Length = 260

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 94/204 (46%), Positives = 127/204 (62%), Gaps = 10/204 (4%)

Query: 127 HHAPTTFSDKMALWTVKSLRW---------PTDLFFQRRYGCRAMMLETVAAVPGMVGGM 177
           H +P      + L T++  R+         P     + ++  R + LETVA  PGMV GM
Sbjct: 41  HVSPQKLHQHVGLRTIQVFRYLFDKATGYTPAGTMTEAQWLRRMIFLETVAGCPGMVAGM 100

Query: 178 LLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYF 237
           L H KSLR      GWI  LLEEAENERMHL+TF+++ +P    RA+V   QGVFFNAYF
Sbjct: 101 LRHLKSLRSMSRDRGWIHTLLEEAENERMHLITFLQLRQPGPAFRAMVIVAQGVFFNAYF 160

Query: 238 LGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI-ENVPAPAIATDYWRLPPNSTLK 296
           L YL+SP+  H  VG+LEEEA+ +YT  L+E+D G + ++ PAP +A  YW L   +T++
Sbjct: 161 LAYLLSPRTCHAFVGFLEEEAVKTYTHALEEIDAGRLWKDTPAPPVAVQYWGLKQGATMR 220

Query: 297 DVVLVVRADEAHHRDVNHYASDIH 320
           D++L VRADEA H  VNH  S ++
Sbjct: 221 DLILAVRADEACHAHVNHTLSQLN 244


>gi|342890541|gb|EGU89342.1| hypothetical protein FOXB_00140 [Fusarium oxysporum Fo5176]
          Length = 341

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/166 (51%), Positives = 115/166 (69%), Gaps = 6/166 (3%)

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
           R + LE++A VPGMVGGML H  SLRR +   GWI+ LLEE+ NERMHL+TFM++ +P W
Sbjct: 142 RFIFLESIAGVPGMVGGMLRHLSSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGW 201

Query: 220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI----- 274
           + + ++   QGVFFN  F+ YL+SPK  HR VGYLEEEA+H+YT  +KE++ G++     
Sbjct: 202 FMKVMIIGAQGVFFNGLFICYLLSPKIVHRFVGYLEEEAVHTYTRCIKEIEDGHLPKWSD 261

Query: 275 ENVPAPAIATDYWRLPPN-STLKDVVLVVRADEAHHRDVNHYASDI 319
            N   P IA  YW +P    T+KD++L +RADEA HR VNH   ++
Sbjct: 262 PNFRIPDIAIQYWNIPEERQTMKDLILYIRADEAVHRGVNHTLGNL 307


>gi|400596179|gb|EJP63955.1| alternative oxidase [Beauveria bassiana ARSEF 2860]
          Length = 593

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 102/252 (40%), Positives = 145/252 (57%), Gaps = 36/252 (14%)

Query: 112 PWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRW------------------PTDL-- 151
           P  +YE +++  +  H  P TF D +A  TV+  R+                  PT    
Sbjct: 322 PGYSYE-EMTAVVPAHRKPRTFGDWLAWKTVRFARYWMDKATGMDRQQQVDKSHPTTAVE 380

Query: 152 ----FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMH 207
                 + ++  R + LE++A VPGMVGGML H  SLRR +   GWI+ LLEE+ NERMH
Sbjct: 381 AEKPLTEAQWLIRFVFLESIAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMH 440

Query: 208 LMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLK 267
           L+TFM++ +P W+ + ++   QGVFFN  FL YL +PK  HR VGYLEEEA+H+YT  +K
Sbjct: 441 LLTFMKMCEPGWFMKLMIIGAQGVFFNGMFLMYLANPKIVHRFVGYLEEEAVHTYTRSIK 500

Query: 268 ELDKGNI-----ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHY 321
           E++ G++          P IA  YWR+P  + T+KD++L +RADEA HR VNH   +++ 
Sbjct: 501 EIEDGHLPRWADPKFRIPDIAIQYWRMPEGHQTMKDLLLYIRADEAGHRGVNHTFGNLNQ 560

Query: 322 QGRQLRESPAPL 333
                +E P P 
Sbjct: 561 -----KEDPNPF 567


>gi|212528930|ref|XP_002144622.1| alternative oxidase AlxA, putative [Talaromyces marneffei ATCC
           18224]
 gi|210074020|gb|EEA28107.1| alternative oxidase AlxA, putative [Talaromyces marneffei ATCC
           18224]
          Length = 357

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 89/183 (48%), Positives = 124/183 (67%), Gaps = 9/183 (4%)

Query: 154 QRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFME 213
           +R++  R + LE+VA VPGMV GML H +SLR      GWI+ LLEEA NERMHL+TFM+
Sbjct: 149 ERKWLNRILFLESVAGVPGMVAGMLRHLRSLRTMRRDNGWIETLLEEAYNERMHLLTFMK 208

Query: 214 VAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN 273
           +A+P  + R +V   QGV+FN  F  YL+SP+  HR VGYLEEEA+ +YT  ++EL  GN
Sbjct: 209 IAEPGLFMRVMVLGAQGVYFNGLFFAYLVSPRTCHRFVGYLEEEAVLTYTRIIQELQAGN 268

Query: 274 I---ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRES 329
           +   +N+ AP IA +YW++P  +  + D++L VRADEA HR+VNH   +++      +E 
Sbjct: 269 LPEWQNMEAPEIAINYWKMPEGHRKMLDLMLYVRADEAKHREVNHTLGNLNQ-----KED 323

Query: 330 PAP 332
           P P
Sbjct: 324 PNP 326


>gi|388516585|gb|AFK46354.1| unknown [Medicago truncatula]
          Length = 131

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 88/131 (67%), Positives = 111/131 (84%)

Query: 206 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 265
           MHLMT +E+ KP W+ER LV   QGVFFN +F+ Y++SPK AHR VGYLEEEA+ SYT++
Sbjct: 1   MHLMTMVELVKPSWHERLLVITAQGVFFNGFFVFYILSPKIAHRFVGYLEEEAVISYTQY 60

Query: 266 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 325
           L  ++ G +ENVPAPAIA DYWRLP ++TLKDVV V+RADEAHHR VNH+ASDIH+QG++
Sbjct: 61  LNAIESGKVENVPAPAIAIDYWRLPNDATLKDVVTVIRADEAHHRGVNHFASDIHHQGKE 120

Query: 326 LRESPAPLGYH 336
           L+E+PAP+GYH
Sbjct: 121 LKEAPAPVGYH 131


>gi|67595330|ref|XP_665993.1| alternative oxidase [Cryptosporidium hominis TU502]
 gi|35375840|gb|AAQ84545.1| alternative oxidase [Cryptosporidium parvum]
 gi|54656887|gb|EAL35765.1| alternative oxidase [Cryptosporidium hominis]
          Length = 335

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 97/209 (46%), Positives = 129/209 (61%), Gaps = 10/209 (4%)

Query: 125 KKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYG------CRAMM-LETVAAVPGMVGGM 177
           K H  P  F DKM+ + V +LR   DL  +   G      CR ++ LETVA VPGMVG M
Sbjct: 126 KTHLCPNGFKDKMSYYLVIALRKSFDLLTRYNKGHNEYQWCRRIIFLETVAGVPGMVGAM 185

Query: 178 LLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFME-VAKPKWYERALVFAVQGVFFNAY 236
           L H  SLR+ +   GWI  LLEEAENERMHL+  ++ + KP    R  V   Q  F   Y
Sbjct: 186 LRHFSSLRKMKRDNGWIHTLLEEAENERMHLLISLQLINKPSILTRVSVIGTQFAFLIFY 245

Query: 237 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENV--PAPAIATDYWRLPPNST 294
            + Y+ISPK++HR VGYLEEEA+ +YT  ++E+DKG +      AP  A+ Y+ LP ++T
Sbjct: 246 TIFYIISPKYSHRFVGYLEEEAVSTYTHLIEEIDKGLLPGFEKKAPKFASVYYGLPEDAT 305

Query: 295 LKDVVLVVRADEAHHRDVNHYASDIHYQG 323
           ++D+ L +R DE+HHRDVNH  +DI   G
Sbjct: 306 IRDLFLAMRRDESHHRDVNHNLADIRLNG 334


>gi|389744708|gb|EIM85890.1| alternative oxidase [Stereum hirsutum FP-91666 SS1]
          Length = 331

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 85/163 (52%), Positives = 110/163 (67%), Gaps = 3/163 (1%)

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
           R + LE++A VPGMV     H KSLR      GWI  LLEEAENERMHLMTFM +  P W
Sbjct: 120 RILFLESIAGVPGMVAATCRHLKSLRLMRRDSGWIHTLLEEAENERMHLMTFMTLRNPGW 179

Query: 220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---EN 276
           + R L+   QGVF+N +F  YLISP+  HR VGYLEEEA+ +Y+  ++E++ G +    N
Sbjct: 180 FFRMLILGAQGVFYNMFFFSYLISPRVCHRFVGYLEEEAVITYSRCIQEMEAGRLPLWSN 239

Query: 277 VPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
            PAP IA DYWRL P++T+ DV+  VR+DE  HR VNH  +++
Sbjct: 240 KPAPEIAKDYWRLRPDATMLDVIYAVRSDETSHRFVNHSLANL 282


>gi|443727462|gb|ELU14203.1| hypothetical protein CAPTEDRAFT_151460 [Capitella teleta]
          Length = 233

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 95/203 (46%), Positives = 123/203 (60%), Gaps = 19/203 (9%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFF------------QRRYGCRAMMLETVAAVPGMV 174
           H  P  F D  A   VK+ R     FF            +RR+  R   LETVAAVPGMV
Sbjct: 18  HKKPEGFIDNFAFIGVKTTR----TFFDAVSGFNRGERNERRWLTRLCFLETVAAVPGMV 73

Query: 175 GGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFN 234
             M+ H  S+R+     GWI  LLEEAENERMHLMTF+ + +P W  R +V   QGVF  
Sbjct: 74  AAMVRHLNSIRKMSRDHGWIHTLLEEAENERMHLMTFLLLKQPSWAFRMVVVITQGVFVT 133

Query: 235 AYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIEN---VPAPAIATDYWRLPP 291
            +   Y++SPK  HR VGYLEEEA+ +YT+ LKE++ GN+++    PA  +A  YW L  
Sbjct: 134 GFSCAYMLSPKLCHRFVGYLEEEAVVTYTKLLKEIETGNMQHWLTQPASQVAIHYWNLAE 193

Query: 292 NSTLKDVVLVVRADEAHHRDVNH 314
           ++ ++DV+L +RADEAHHR VNH
Sbjct: 194 DAKMRDVILAIRADEAHHRVVNH 216


>gi|310793332|gb|EFQ28793.1| alternative oxidase [Glomerella graminicola M1.001]
          Length = 355

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 88/181 (48%), Positives = 120/181 (66%), Gaps = 11/181 (6%)

Query: 159 CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 218
            R + LE++A VPGMV GML H  SLRR     GWI+ LLEE+ NERMHL+TFM++++P 
Sbjct: 155 VRFIFLESIAGVPGMVAGMLRHLGSLRRMRRDNGWIETLLEESFNERMHLLTFMKMSEPG 214

Query: 219 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---- 274
           W+ + ++   QGVFFN  FL YL++PK  HR VGYLEEEA+H+YT  L E+D+G +    
Sbjct: 215 WFMKVMILGAQGVFFNGMFLSYLVAPKVTHRFVGYLEEEAVHTYTRCLYEIDQGLLPKWS 274

Query: 275 -ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 332
             N   P IA  YW++P  + T+KD++L +RADEA HR VNH   +++      +E P P
Sbjct: 275 DPNFVIPDIAVQYWKIPEGHRTMKDLILYIRADEAVHRGVNHTLGNLNQ-----KEDPNP 329

Query: 333 L 333
            
Sbjct: 330 F 330


>gi|14348862|gb|AAK61349.1|AF363785_1 alternative oxidase [Venturia inaequalis]
          Length = 358

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 102/217 (47%), Positives = 130/217 (59%), Gaps = 29/217 (13%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFF------------------QRRYG-------CRA 161
           H     +SDK+AL  VK LRW  D                     Q+RYG        R 
Sbjct: 98  HRDTRNWSDKVALIAVKLLRWGLDTVSGYKHGKAQALHAQDPQEAQKRYGMTGKQYLVRN 157

Query: 162 MMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYE 221
           + L +VA VPGMV GML H  S+RR +   GW + LLEE+ NERMHL+ F+++ +P W+ 
Sbjct: 158 VFLXSVAGVPGMVAGMLRHLHSMRRMKRDHGWXETLLEESYNERMHLLIFLKLYEPGWFM 217

Query: 222 RALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVP 278
           R  V   QGVFFNA FL YLISP+  HR VGYLEEEA+ +YT  L +L+ G +   E + 
Sbjct: 218 RLAVLGAQGVFFNAMFLSYLISPRTCHRFVGYLEEEAVVTYTRELADLEAGKLPEWETLA 277

Query: 279 APAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNH 314
           AP IA DY+ LP  + T+KD++L VRADEA HR+VNH
Sbjct: 278 APDIAVDYYNLPEGHRTMKDLLLHVRADEAKHREVNH 314


>gi|156061475|ref|XP_001596660.1| hypothetical protein SS1G_02882 [Sclerotinia sclerotiorum 1980]
 gi|154700284|gb|EDO00023.1| hypothetical protein SS1G_02882 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 360

 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 92/226 (40%), Positives = 137/226 (60%), Gaps = 33/226 (14%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL---------------------------FFQRRYGC 159
           H  P  FSD++AL  V+ LRW TD                              +R++  
Sbjct: 96  HRKPRDFSDRVALCMVRFLRWCTDFATGYKHNVEEPKKASDSNAVAATKPYQMSERKWLI 155

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
           R + LE+VA VPGMV GML H +SLR  +   GWI+ LLEEA NERMHL+TF+++ +P  
Sbjct: 156 RYVFLESVAGVPGMVAGMLRHLRSLRGLKRDNGWIETLLEEAYNERMHLLTFLKMYEPGI 215

Query: 220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI----- 274
           + R ++   QGVFFN++F+ YL+SP+  HR VGYLEEEA+ +YT  +++L+ G++     
Sbjct: 216 FMRTMILGAQGVFFNSFFICYLLSPRTCHRFVGYLEEEAVLTYTLSIQDLENGHLPKWSD 275

Query: 275 ENVPAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDI 319
            N  AP +A +YW +P +  +++D++  +RADEA HR+VNH   ++
Sbjct: 276 PNFKAPDLAIEYWGMPEDQRSMRDLLYYIRADEAKHREVNHTLGNL 321


>gi|322697635|gb|EFY89413.1| Alternative oxidase [Metarhizium acridum CQMa 102]
          Length = 354

 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 86/181 (47%), Positives = 120/181 (66%), Gaps = 11/181 (6%)

Query: 159 CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 218
            R + LE++A VPGMVGGML H  SLRR +   GWI+ LLEE+ NERMHL+TFM++ +P 
Sbjct: 154 VRFVFLESIAGVPGMVGGMLRHLSSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPG 213

Query: 219 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---- 274
           W+ + ++   QGVFFNA F+ YL+ P+  HR VGYLEEEA+H+YT  ++E++ G++    
Sbjct: 214 WFMKLMIIGAQGVFFNALFITYLLHPRIVHRFVGYLEEEAVHTYTRAIREIEDGHLPKWA 273

Query: 275 -ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 332
                 P IA  YW +P  N T+KD++L +RADEA HR VNH   +++      +E P P
Sbjct: 274 DPKFQIPDIAVQYWNMPEGNRTMKDLILYIRADEAGHRGVNHTLGNLNQ-----KEDPNP 328

Query: 333 L 333
            
Sbjct: 329 F 329


>gi|71747778|ref|XP_822944.1| alternative oxidase [Trypanosoma brucei brucei strain 927/4
           GUTat10.1]
 gi|51338731|sp|Q26710.2|AOX_TRYBB RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|17129642|dbj|BAB72245.1| alternative oxidase [Trypanosoma brucei brucei]
 gi|17129644|dbj|BAB72256.1| alternative oxidase [Trypanosoma brucei brucei]
 gi|45825838|gb|AAB46424.2| alternative oxidase [Trypanosoma brucei brucei]
 gi|62701577|dbj|BAD95615.1| alternative oxidase [Trypanosoma brucei gambiense]
 gi|70832612|gb|EAN78116.1| alternative oxidase [Trypanosoma brucei brucei strain 927/4
           GUTat10.1]
 gi|71609888|dbj|BAE16578.1| alternative oxidase [Trypanosoma evansi]
 gi|108743274|dbj|BAE95411.1| alternative oxidase [Trypanosoma brucei gambiense]
 gi|108743276|dbj|BAE95412.1| alternative oxidase [Trypanosoma brucei rhodesiense]
 gi|261332779|emb|CBH15774.1| alternative oxidase, putative [Trypanosoma brucei gambiense DAL972]
          Length = 329

 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 93/214 (43%), Positives = 125/214 (58%), Gaps = 10/214 (4%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC--------RAMMLETVAAVPGMVGGML 178
           H  P    D +A  +V++ RW  D F   R+G         R + LETVA VPGMVGGML
Sbjct: 77  HKKPNGLVDTLAYRSVRTCRWLFDTFSLYRFGSITESKVISRCLFLETVAGVPGMVGGML 136

Query: 179 LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 238
            H  SLR      GWI  LL EAENERMHLMTF+E+ +P    R  +   Q + +    +
Sbjct: 137 RHLSSLRYMTRDKGWINTLLVEAENERMHLMTFIELRQPGLPLRVSIIITQAIMYLFLLV 196

Query: 239 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVP--APAIATDYWRLPPNSTLK 296
            Y+ISP+F HR VGYLEEEA+ +YT  ++ +D+G +       P +A  YW L  N+T +
Sbjct: 197 AYVISPRFVHRFVGYLEEEAVITYTGVMRAIDEGRLRPTKNDVPEVARVYWNLSKNATFR 256

Query: 297 DVVLVVRADEAHHRDVNHYASDIHYQGRQLRESP 330
           D++ V+RADEA HR VNH  +D+H +  Q   +P
Sbjct: 257 DLINVIRADEAEHRVVNHTFADMHEKRLQNSVNP 290


>gi|189211215|ref|XP_001941938.1| alternative oxidase, mitochondrial precursor [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187978031|gb|EDU44657.1| alternative oxidase, mitochondrial precursor [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 352

 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 97/235 (41%), Positives = 136/235 (57%), Gaps = 34/235 (14%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTD-------------------------LFFQRRYGCRA 161
           H    T SDK+AL  VK LRW  D                            + +Y  R 
Sbjct: 92  HREAKTMSDKVALLAVKVLRWGLDKATGYKHHKALDVDAKDPVAARRKFAMNEEKYLIRN 151

Query: 162 MMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYE 221
           + LE+VA VPGMV GML H  S+RR +   GWI++LLEE+ NERMHL+ F+++ +P  + 
Sbjct: 152 VFLESVAGVPGMVAGMLRHLHSMRRMKRDNGWIESLLEESYNERMHLLVFLKMQQPGRFM 211

Query: 222 RALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVP 278
           R +V   QGVF NA F  YL+SP+  HR +GYLEEEA+ +YT  +++LD G +   E + 
Sbjct: 212 RLMVLGAQGVFCNALFFAYLLSPRTVHRFIGYLEEEAVITYTRQIEDLDAGRLPKWEKMQ 271

Query: 279 APAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 332
           AP IA DYW +P  + T++D++L +RADE+ HR+VNH   ++       +E P P
Sbjct: 272 APEIAIDYWNMPEGHRTMRDLLLYIRADESKHREVNHTFGNL-----DQKEDPNP 321


>gi|325610915|gb|ADZ36698.1| alternative oxidase [Urechis unicinctus]
          Length = 348

 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 91/204 (44%), Positives = 123/204 (60%), Gaps = 11/204 (5%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFF--------QRRYGCRAMMLETVAAVPGMVGGML 178
           H  P    DK+A   VK  R   D           ++ +  R   LETVA VPGMV  M+
Sbjct: 133 HRNPEGIVDKIAYMGVKFTRGCYDFVSGYSRGRQDEKMWVSRLCFLETVAGVPGMVAAMV 192

Query: 179 LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 238
            H  SLR+     GWI  LLEEAENERMHLM  +++ +P  + R  V   QGVF + + +
Sbjct: 193 RHLTSLRKMRRDHGWIHTLLEEAENERMHLMVMLQLKQPSLFFRLGVMVTQGVFVSGFSV 252

Query: 239 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIEN---VPAPAIATDYWRLPPNSTL 295
            Y++SP+  HR VGYLEEEA+ +YT+ LKE+D G +++   +P P +A  YW+L P + +
Sbjct: 253 AYMLSPRLCHRFVGYLEEEAVITYTKLLKEIDSGAMQHWNTLPGPDVAISYWKLRPGAAM 312

Query: 296 KDVVLVVRADEAHHRDVNHYASDI 319
           KDV+L +RADEAHHR VNH  S +
Sbjct: 313 KDVILAIRADEAHHRVVNHTLSSL 336


>gi|51701285|sp|Q8NJ59.1|AOX_BOTFU RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|21953239|emb|CAD42731.1| alternative oxidase [Botryotinia fuckeliana]
          Length = 361

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 93/226 (41%), Positives = 136/226 (60%), Gaps = 33/226 (14%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL---------------------------FFQRRYGC 159
           H  P  FSD++AL  V+ LRW TD                              +R++  
Sbjct: 97  HRKPRDFSDRVALGMVRFLRWCTDFATGYKHNVEAPKKASDSNALTATKPYQMSERKWLI 156

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
           R + LE+VA VPGMV GML H +SLR  +   GWI+ LLEEA NERMHL+TF+++ +P  
Sbjct: 157 RYVFLESVAGVPGMVAGMLRHLRSLRGLKRDNGWIETLLEEAYNERMHLLTFLKMYEPGI 216

Query: 220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI----- 274
           + R ++   QGVFFN++FL YL SP+  HR VGYLEEEA+ +YT  +++L+ G++     
Sbjct: 217 FMRTMILGAQGVFFNSFFLCYLFSPRTCHRFVGYLEEEAVLTYTLSIQDLENGHLPKWAD 276

Query: 275 ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDI 319
            +  AP +A +YW +P  N +++D++  +RADEA HR+VNH   ++
Sbjct: 277 PDFKAPDLAVEYWGMPEGNRSMRDLLYYIRADEAKHREVNHTLGNL 322


>gi|443722305|gb|ELU11227.1| hypothetical protein CAPTEDRAFT_227551 [Capitella teleta]
          Length = 337

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 95/220 (43%), Positives = 131/220 (59%), Gaps = 17/220 (7%)

Query: 114 EAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLF--FQRR-------YGCRAMML 164
           E Y+ +++     H  P  F D  A   V++ R   D    + R        +  R   L
Sbjct: 113 EVYDVNIT-----HKKPVGFIDNFAYLGVQTTRKVFDFLTGYNRTPSPSNAVWVNRLCFL 167

Query: 165 ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERAL 224
           ETVA VPGMV  M+ H +SLRR     GWI  LLEEAENERMHLM F+++ +P    R  
Sbjct: 168 ETVAGVPGMVAAMVRHLESLRRMRRDHGWIHTLLEEAENERMHLMVFLQIKQPSLLFRLS 227

Query: 225 VFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIEN---VPAPA 281
           V + Q +F + + + YL+SPK  HR VGYLEEEA+ +YT+ L++++ G +++    PA  
Sbjct: 228 VMSTQAIFVSGFSIAYLLSPKLCHRFVGYLEEEAVITYTKLLQQIEDGGMQDWKTKPASQ 287

Query: 282 IATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHY 321
           IA +YWRL   +T+KDVVL +RADEAHHR VNH  S + +
Sbjct: 288 IAINYWRLSQEATMKDVVLAIRADEAHHRVVNHTLSSMRH 327


>gi|154313707|ref|XP_001556179.1| alternative oxidase [Botryotinia fuckeliana B05.10]
          Length = 361

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 93/226 (41%), Positives = 136/226 (60%), Gaps = 33/226 (14%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL---------------------------FFQRRYGC 159
           H  P  FSD++AL  V+ LRW TD                              +R++  
Sbjct: 97  HRKPRDFSDRVALGMVRFLRWCTDFATGYKHNVEAPKKASDSNALTATKPYQMSERKWLI 156

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
           R + LE+VA VPGMV GML H +SLR  +   GWI+ LLEEA NERMHL+TF+++ +P  
Sbjct: 157 RYVFLESVAGVPGMVAGMLRHLRSLRGLKRDNGWIETLLEEAYNERMHLLTFLKMYEPGI 216

Query: 220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI----- 274
           + R ++   QGVFFN++FL YL SP+  HR VGYLEEEA+ +YT  +++L+ G++     
Sbjct: 217 FMRTMILGAQGVFFNSFFLCYLFSPRTCHRFVGYLEEEAVLTYTLSIQDLENGHLPKWAD 276

Query: 275 ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDI 319
            +  AP +A +YW +P  N +++D++  +RADEA HR+VNH   ++
Sbjct: 277 PDFKAPDLAVEYWGMPEGNRSMRDLLYYIRADEAKHREVNHTLGNL 322


>gi|169858069|ref|XP_001835681.1| mitochondrial alternative oxidase [Coprinopsis cinerea
           okayama7#130]
 gi|116503357|gb|EAU86252.1| mitochondrial alternative oxidase [Coprinopsis cinerea
           okayama7#130]
          Length = 376

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 95/207 (45%), Positives = 127/207 (61%), Gaps = 7/207 (3%)

Query: 119 DLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGML 178
           DL    K    P  + D     TV+ LR    +   + +  R + LE++A VPGMV   L
Sbjct: 133 DLVSGYKHKPLPPNYKD----LTVQHLRDQGYILDDKGWLRRILFLESIAGVPGMVAATL 188

Query: 179 LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 238
            H +SLR      GWI   LEEAENERMHLMTFM + KP    RA+V   QGVF+N +FL
Sbjct: 189 RHLQSLRLMRRDSGWIHTCLEEAENERMHLMTFMTLRKPSIAFRAMVLGAQGVFYNLFFL 248

Query: 239 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTL 295
            Y+ SPK  HR VGYLEEEA+ +YT+ +KEL+ G I   E  PAP IA DYWR+ P++ +
Sbjct: 249 SYIFSPKTCHRFVGYLEEEAVVTYTKCIKELEDGLIPEWEGKPAPEIAIDYWRMSPDAKM 308

Query: 296 KDVVLVVRADEAHHRDVNHYASDIHYQ 322
            D++  VR+DE+ HR VNH  +++++ 
Sbjct: 309 IDLLYAVRSDESTHRFVNHSLANLNHD 335


>gi|389630020|ref|XP_003712663.1| alternative oxidase [Magnaporthe oryzae 70-15]
 gi|51701271|sp|O93788.1|AOX_MAGO7 RecName: Full=Alternative oxidase, mitochondrial; AltName:
           Full=AOXMg; AltName: Full=MgAOX; Flags: Precursor
 gi|12240249|gb|AAG49588.1|AF325683_1 alternative terminal oxidase [Magnaporthe grisea]
 gi|3928513|dbj|BAA34672.1| alternative oxidase [Magnaporthe grisea]
 gi|351644995|gb|EHA52856.1| alternative oxidase [Magnaporthe oryzae 70-15]
          Length = 377

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 94/225 (41%), Positives = 132/225 (58%), Gaps = 31/225 (13%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL-------------------------FFQRRYGCRA 161
           H  P T  DK A   V+  RW  D                            + ++  R 
Sbjct: 93  HRKPRTLGDKFAWSLVRISRWGMDKVSGLSSEQQQINKGSPTTSIVAAKPLTEAQWLSRF 152

Query: 162 MMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYE 221
           + LE++AAVPGMV GML H  SLRR +   GWI+ LLEEA NERMHL+TF+++ +P W  
Sbjct: 153 IFLESIAAVPGMVAGMLRHLHSLRRLKRDNGWIETLLEEAYNERMHLLTFLKMCEPGWLM 212

Query: 222 RALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI-----EN 276
           + L+   QGV+FNA F+ YLISPK  HR VGYLEEEA+H+YT  ++EL++G++       
Sbjct: 213 KILIIGAQGVYFNAMFVAYLISPKICHRFVGYLEEEAVHTYTRSIEELERGDLPKWSDPK 272

Query: 277 VPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIH 320
              P IA  YW +P  + T++D++L +RADEA+HR V+H   +++
Sbjct: 273 FQVPEIAVSYWGMPEGHRTMRDLLLYIRADEANHRGVHHTLGNLN 317


>gi|353244382|emb|CCA75783.1| related to alternative oxidase precursor, mitochondrial
           [Piriformospora indica DSM 11827]
          Length = 449

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 103/287 (35%), Positives = 146/287 (50%), Gaps = 34/287 (11%)

Query: 62  QREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLS 121
           Q   N Q +      G+    ++   +Y     P      G    W  F P  +     +
Sbjct: 118 QNGVNAQLSTENVKPGTEGAHKRDTTTYPEFPTPH----SGDRGDWVLFHPVYSQSELKA 173

Query: 122 IDLKKHHAPTTFSDKMALWTVKSLRWPTD--------------------------LFFQR 155
           + + +H  P    D+ A W V++LR   D                          +    
Sbjct: 174 VQVLRHQ-PENMRDRTASWFVRALRKGYDFVSGYHHKPIPPGSTMSIEELRKGGYILSAD 232

Query: 156 RYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVA 215
           ++  R + LET+A VPG    M+ H + LR  +  GGWI  LLEEAENERMHLMTFM + 
Sbjct: 233 QWLNRILFLETIAGVPGFFAAMIRHLRGLRGMKRDGGWIHTLLEEAENERMHLMTFMTLR 292

Query: 216 KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI- 274
           +   + RA + A QGVF NA+FL YL+SP+  HR VG LEEEA  +YT  +++++ G + 
Sbjct: 293 QSGIFFRAFIVAAQGVFANAFFLAYLVSPRTCHRFVGSLEEEATLTYTALIEDMEAGRVP 352

Query: 275 --ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
             ++ PAP IA DYWRL PN+TL DV+  VR+DE  HR VNH  +++
Sbjct: 353 EWKDKPAPGIAIDYWRLKPNATLLDVIYAVRSDETTHRFVNHTLANL 399


>gi|347832413|emb|CCD48110.1| aox, alternative oxidase [Botryotinia fuckeliana]
          Length = 358

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 96/240 (40%), Positives = 140/240 (58%), Gaps = 38/240 (15%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL---------------------------FFQRRYGC 159
           H  P  FSD++AL  V+ LRW TD                              +R++  
Sbjct: 94  HRKPRDFSDRVALGMVRFLRWCTDFATGYKHNVEAPKKASDSNALTATKPYQMSERKWLI 153

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
           R + LE+VA VPGMV GML H +SLR  +   GWI+ LLEEA NERMHL+TF+++ +P  
Sbjct: 154 RYVFLESVAGVPGMVAGMLRHLRSLRGLKRDNGWIETLLEEAYNERMHLLTFLKMYEPGI 213

Query: 220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI----- 274
           + R ++   QGVFFN++FL YL SP+  HR VGYLEEEA+ +YT  +++L+ G++     
Sbjct: 214 FMRTMILGAQGVFFNSFFLCYLFSPRTCHRFVGYLEEEAVLTYTLSIQDLENGHLPKWAD 273

Query: 275 ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPL 333
            +  AP +A +YW +P  N +++D++  +RADEA HR+VNH   ++     +  E P P 
Sbjct: 274 PDFKAPDLAVEYWGMPEGNRSMRDLLYYIRADEAKHREVNHTLGNL-----KQDEDPNPF 328


>gi|51701290|sp|Q96UR9.1|AOX_MONFR RecName: Full=Alternative oxidase, mitochondrial; AltName:
           Full=MfAOX1; Flags: Precursor
 gi|16517111|gb|AAL24516.1| alternative oxidase [Monilinia fructicola]
          Length = 358

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 94/226 (41%), Positives = 136/226 (60%), Gaps = 33/226 (14%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL---------------------------FFQRRYGC 159
           H  P  FSD++AL  V+ LRW TD                              +R++  
Sbjct: 94  HRKPRDFSDRVALGMVRFLRWCTDFATGYKHNVEAPKTASDSNAVTATKPYQMSERKWLI 153

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
           R + LE+VA VPGMV GML H +SLR  +   GWI+ LLEEA NERMHL+TF+++ +P  
Sbjct: 154 RYVFLESVAGVPGMVAGMLRHLRSLRGLKRDNGWIETLLEEAYNERMHLLTFLKMYEPGL 213

Query: 220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI----- 274
           + R ++   QGVFFN++FL YL SPK  HR VGYLEEEA+ +YT  +++L+ G++     
Sbjct: 214 FMRTMILGAQGVFFNSFFLCYLFSPKTCHRFVGYLEEEAVLTYTLSIQDLENGHLPKWAD 273

Query: 275 ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDI 319
            N  AP +A +YW +P  + +++D++  +RADEA HR+VNH   ++
Sbjct: 274 PNFKAPDLAIEYWGMPEGHRSMRDLLYYIRADEAKHREVNHTLGNL 319


>gi|396466567|ref|XP_003837720.1| similar to alternative oxidase [Leptosphaeria maculans JN3]
 gi|312214283|emb|CBX94276.1| similar to alternative oxidase [Leptosphaeria maculans JN3]
          Length = 356

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 98/235 (41%), Positives = 135/235 (57%), Gaps = 34/235 (14%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL-------------------------FFQRRYGCRA 161
           H    T SDK+AL  VK LRW  D                            + +Y  R 
Sbjct: 96  HREAQTISDKLALVAVKILRWGLDTATGYKHGKAVKLNAKDPEAAKQKFAMTEEKYLVRN 155

Query: 162 MMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYE 221
           + LE+VA VPGMV GML H  S+RR +   GWI++LLEE+ NERMHL+ F+++ KP  + 
Sbjct: 156 VFLESVAGVPGMVAGMLRHLHSMRRMKRDNGWIESLLEESFNERMHLLVFLKMQKPGPFM 215

Query: 222 RALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVP 278
           R +V   QGV+ NA F  YL+SP+  HR VGYLEEEA+ +YT  +++LD G +   E + 
Sbjct: 216 RFMVLVAQGVWCNALFFAYLLSPRTVHRFVGYLEEEAVITYTRQIEDLDAGRLPKWEKME 275

Query: 279 APAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 332
           AP IA DYW +P    T++D++L +RADE+ HR+VNH   ++       +E P P
Sbjct: 276 APEIAVDYWHMPEGRRTMRDLLLYIRADESKHREVNHTFGNL-----DQKEDPNP 325


>gi|393243185|gb|EJD50700.1| alternative oxidase [Auricularia delicata TFB-10046 SS5]
          Length = 370

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 104/259 (40%), Positives = 140/259 (54%), Gaps = 33/259 (12%)

Query: 93  EAPKVNKD---DGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPT 149
           +AP+V      D     W  F P    + + ++ + +H    T SDK+A + V  LR   
Sbjct: 49  DAPRVEPKGSADVPTGDWVLFHPAYTKQENDAVRVVRHER-KTMSDKLAAFFVAGLRRGF 107

Query: 150 DL----------------FFQRRYG----------CRAMMLETVAAVPGMVGGMLLHCKS 183
           D+                  Q R G           R + LE++A VPGMV     H +S
Sbjct: 108 DIVSRYKHKDIPPNSNMNLQQLREGGYTMDPHMWLNRILFLESIAGVPGMVAATCRHLRS 167

Query: 184 LRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLIS 243
           LR      GWI  LLEEAENERMHLMTFM +  P    RAL+   QGVF+N +F  YL S
Sbjct: 168 LRLMRRDAGWIHTLLEEAENERMHLMTFMTLRNPSIGFRALILGAQGVFYNLFFFSYLFS 227

Query: 244 PKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---NVPAPAIATDYWRLPPNSTLKDVVL 300
           PK  HR VG LEEEA+++YT+ + ++  G++    + PAP IA DYWRLP N+TL DV+ 
Sbjct: 228 PKTCHRFVGILEEEAVYTYTQCISDIKNGHLPEWADKPAPEIAIDYWRLPKNATLLDVIY 287

Query: 301 VVRADEAHHRDVNHYASDI 319
            VR+DE+ HR VNH  +++
Sbjct: 288 AVRSDESTHRFVNHTLANL 306


>gi|393212505|gb|EJC98005.1| alternative oxidase [Fomitiporia mediterranea MF3/22]
          Length = 379

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 84/182 (46%), Positives = 115/182 (63%), Gaps = 3/182 (1%)

Query: 141 TVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEE 200
           +VK LR    +  +  +  R + LET+A +PGM    + H  SLR      GWI  LLEE
Sbjct: 149 SVKELREQGYIMTETGWMNRCLFLETIAGIPGMAAATIRHLHSLRLLRRDAGWIHTLLEE 208

Query: 201 AENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 260
           AENERMHLM+F+ + KP  + R L+   QGVF+N +F  YL++P+  HR VGYLEEEA+ 
Sbjct: 209 AENERMHLMSFLAIRKPGIFMRGLILGAQGVFYNVFFFSYLMAPRVCHRFVGYLEEEAVK 268

Query: 261 SYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYAS 317
           +YT  + +L+ G     EN PAP IA DYWRL  N+TL D++  +R+DE  HR VNH  +
Sbjct: 269 TYTALIADLENGRFPEWENKPAPPIAKDYWRLRDNATLLDMIYAIRSDEVTHRFVNHSLA 328

Query: 318 DI 319
           ++
Sbjct: 329 NL 330


>gi|317157513|ref|XP_001825718.2| alternative oxidase [Aspergillus oryzae RIB40]
          Length = 226

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 96/206 (46%), Positives = 131/206 (63%), Gaps = 22/206 (10%)

Query: 137 MALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVAAVPGMVGGML 178
           MAL TV+ LRW  DL                    + ++  R + LE+VA VPGMV  ML
Sbjct: 1   MALGTVRFLRWGMDLVTGYHHSHPRDAHSPRFRMTEEKWITRFIFLESVAGVPGMVAAML 60

Query: 179 LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 238
            H KSLRR     GWI+ LLEEA NERMHL+TF+++++P      +V A Q VFF  + L
Sbjct: 61  RHLKSLRRMRRDYGWIETLLEEAYNERMHLLTFLKLSQPGPAMYFMVLAAQCVFFTGFSL 120

Query: 239 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNS-T 294
            YLISP+  HR VGYLEEEA+ +YT+ ++ELDKGN+    N+ APA+A  YW++P    +
Sbjct: 121 AYLISPRICHRFVGYLEEEAVITYTKAIQELDKGNLPLWSNMEAPAMAIKYWQMPEGQRS 180

Query: 295 LKDVVLVVRADEAHHRDVNHYASDIH 320
           ++ ++L VRADEA+HRDVNH   +++
Sbjct: 181 IRSLLLCVRADEANHRDVNHTLGNLN 206


>gi|440469885|gb|ELQ38976.1| alternative oxidase [Magnaporthe oryzae Y34]
 gi|440482974|gb|ELQ63417.1| alternative oxidase [Magnaporthe oryzae P131]
          Length = 387

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 84/168 (50%), Positives = 118/168 (70%), Gaps = 6/168 (3%)

Query: 159 CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 218
            R + LE++AAVPGMV GML H  SLRR +   GWI+ LLEEA NERMHL+TF+++ +P 
Sbjct: 160 SRFIFLESIAAVPGMVAGMLRHLHSLRRLKRDNGWIETLLEEAYNERMHLLTFLKMCEPG 219

Query: 219 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---- 274
           W  + L+   QGV+FNA F+ YLISPK  HR VGYLEEEA+H+YT  ++EL++G++    
Sbjct: 220 WLMKILIIGAQGVYFNAMFVAYLISPKICHRFVGYLEEEAVHTYTRSIEELERGDLPKWS 279

Query: 275 -ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIH 320
                 P IA  YW +P  + T++D++L +RADEA+HR V+H   +++
Sbjct: 280 DPKFQVPEIAVSYWGMPEGHRTMRDLLLYIRADEANHRGVHHTLGNLN 327


>gi|330907160|ref|XP_003295728.1| hypothetical protein PTT_02544 [Pyrenophora teres f. teres 0-1]
 gi|311332743|gb|EFQ96174.1| hypothetical protein PTT_02544 [Pyrenophora teres f. teres 0-1]
          Length = 352

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 97/235 (41%), Positives = 136/235 (57%), Gaps = 34/235 (14%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTD-------------------------LFFQRRYGCRA 161
           H    T SDK+AL  VK LRW  D                            + +Y  R 
Sbjct: 92  HREAKTMSDKVALLAVKVLRWGLDKATGYKHHKALDVDAKNPVAARKKFAMNEEKYLIRN 151

Query: 162 MMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYE 221
           + LE+VA VPGMV GML H  S+RR +   GWI++LLEE+ NERMHL+ F+++ +P  + 
Sbjct: 152 VFLESVAGVPGMVAGMLRHLHSMRRMKRDNGWIESLLEESYNERMHLLVFLKMQQPGRFM 211

Query: 222 RALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVP 278
           R +V   QGV+ NA F  YL+SP+  HR VGYLEEEA+ +YT  +++LD G +   E + 
Sbjct: 212 RLMVLGAQGVWCNALFFAYLLSPRTVHRFVGYLEEEAVITYTRQIEDLDAGRLPKWEKMQ 271

Query: 279 APAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 332
           AP IA DYW +P  + T++D++L +RADE+ HR+VNH   ++       +E P P
Sbjct: 272 APEIAIDYWNMPEGHRTMRDLLLYIRADESKHREVNHTFGNL-----DQKEDPNP 321


>gi|443697354|gb|ELT97860.1| hypothetical protein CAPTEDRAFT_122794 [Capitella teleta]
          Length = 305

 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 94/220 (42%), Positives = 130/220 (59%), Gaps = 17/220 (7%)

Query: 114 EAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLF--FQRR-------YGCRAMML 164
           E Y+ +++     H  P  F D  A   V++ R   D    + R        +  R   L
Sbjct: 81  EVYDVNIT-----HKKPVGFIDNFAYLGVQTTRKVFDFLTGYNRTPSPSNAVWVNRLCFL 135

Query: 165 ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERAL 224
           ETVA VPGMV  M+ H +SLR+     GWI  LLEEAENERMHLM F+++ +P    R  
Sbjct: 136 ETVAGVPGMVAAMVRHLESLRKMRRDHGWIHTLLEEAENERMHLMVFLQIKQPSLLFRLS 195

Query: 225 VFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---NVPAPA 281
           V + Q +F + + + YL+SPK  HR VGYLEEEA+ +YT+ L++++ G ++     PA  
Sbjct: 196 VMSTQAIFVSGFSIAYLLSPKLCHRFVGYLEEEAVITYTKLLQQIEDGGMQEWKTKPASQ 255

Query: 282 IATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHY 321
           IA +YWRL   +T+KDVVL +RADEAHHR VNH  S + +
Sbjct: 256 IAINYWRLSQEATMKDVVLAIRADEAHHRVVNHTLSSMRH 295


>gi|145350126|ref|XP_001419468.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|145357496|ref|XP_001422954.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579700|gb|ABO97761.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144583198|gb|ABP01313.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 221

 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 95/206 (46%), Positives = 122/206 (59%), Gaps = 13/206 (6%)

Query: 127 HHAPTTFSDKMALWTVKSLRW---------PTDLFFQRRYGCRAMMLETVAAVPGMVGGM 177
           H  P    D +A   V+  RW         P        +  R + LETVA VPGMVG M
Sbjct: 16  HRQPRHVRDYLAYGLVQFSRWSFDKVTGYTPKKSLTTDGWLMRFIFLETVAGVPGMVGAM 75

Query: 178 LLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYF 237
           L H  SLR  +   GWI  LLEEAENERMHL+TF+++ +P    R  V   QGVFFNA+F
Sbjct: 76  LRHMMSLRTLKRDHGWIHTLLEEAENERMHLLTFLKLREPGLMFRLAVLGAQGVFFNAFF 135

Query: 238 LGYLISPKFAHRMVGYLEEEAIHSYTEFLKELD----KGNIENVPAPAIATDYWRLPPNS 293
           L YLISP+  HR VGYLEEEA+ +YT  L ++D          +PAP +A  YWR+P ++
Sbjct: 136 LSYLISPRTCHRFVGYLEEEAVRTYTHALHDIDGDGPASEWATMPAPKLAIKYWRMPDDA 195

Query: 294 TLKDVVLVVRADEAHHRDVNHYASDI 319
           T++D+++ VRADEA H  VNH  S +
Sbjct: 196 TVRDLIIAVRADEASHSHVNHTLSSM 221


>gi|340520319|gb|EGR50555.1| predicted protein [Trichoderma reesei QM6a]
          Length = 315

 Score =  180 bits (456), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 85/181 (46%), Positives = 120/181 (66%), Gaps = 11/181 (6%)

Query: 159 CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 218
            R + LE++A VPGMVGGML H  SLR  +   GWI+ LLEE+ NERMHL+TFM + +P 
Sbjct: 115 VRFVFLESIAGVPGMVGGMLRHLSSLRYMKRDNGWIETLLEESYNERMHLLTFMTMCEPG 174

Query: 219 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---- 274
           W+ + ++   QGVFFN+ F+ YL+ PK  HR VGYLEEEA+H+YT  + E+++G++    
Sbjct: 175 WFMKLMIIGAQGVFFNSLFVAYLLHPKIVHRFVGYLEEEAVHTYTRAILEIEEGHLPKWS 234

Query: 275 -ENVPAPAIATDYWRLP-PNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 332
             N   P IA  YWR+P  + T+KD+++ +RADEA HR VNH   +++      +E P P
Sbjct: 235 NPNFRIPDIAVQYWRMPEEHRTMKDLIMYIRADEASHRGVNHTLGNLNQ-----KEDPNP 289

Query: 333 L 333
            
Sbjct: 290 F 290


>gi|406862534|gb|EKD15584.1| hypothetical protein MBM_06212 [Marssonina brunnea f. sp.
           'multigermtubi' MB_m1]
          Length = 355

 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 96/240 (40%), Positives = 137/240 (57%), Gaps = 38/240 (15%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL---------------------------FFQRRYGC 159
           H  P  FSD++AL+ V+ LR+  D                              + ++  
Sbjct: 91  HRKPEDFSDRIALFMVRLLRFGMDTATRYKHDVEEPKKVGDSNAVADTKPYRMSEPKWLI 150

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
           R + LE+VA VPGMV GM+ H  SLRR     GWI+ LLEEA NERMHL+TFM++A+P  
Sbjct: 151 RMVFLESVAGVPGMVAGMIRHLHSLRRLRRDNGWIETLLEEAYNERMHLLTFMKMAEPGR 210

Query: 220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI----- 274
           + R ++   QGVFFN+  L YLISP+  HR VGYLEEEA+ +YT  +K+++ G +     
Sbjct: 211 FMRFMILGAQGVFFNSMVLFYLISPRTCHRFVGYLEEEAVLTYTLAIKDIEAGKLPKWQD 270

Query: 275 ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPL 333
                P +A +YW++P  N T++D++L +RADEA HR+VNH   ++       +E P P 
Sbjct: 271 PKFKVPELAVNYWKMPEGNRTMRDLLLYIRADEAKHREVNHTFGNL-----DQKEDPNPF 325


>gi|348681991|gb|EGZ21807.1| hypothetical protein PHYSODRAFT_496550 [Phytophthora sojae]
          Length = 306

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 96/203 (47%), Positives = 133/203 (65%), Gaps = 13/203 (6%)

Query: 125 KKHHAPTTFSDKMALWTVKSLRWPTDLF----------FQRRYGCRAMMLETVAAVPGMV 174
           + HH      +++A   VK+LR   D+            ++ +  R + LE+VA VPGMV
Sbjct: 85  QTHHPIVKMHERVAYMAVKALRTGFDVISGYRGPGGAMTEKDWLNRCLFLESVAGVPGMV 144

Query: 175 GGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFN 234
           GGML H +SLR  +   GWI  LLEEAENERMHL+ FM + +P ++ RALV   QGVFFN
Sbjct: 145 GGMLRHLRSLRLLKRDYGWIHTLLEEAENERMHLLIFMNIKQPGYFFRALVVGAQGVFFN 204

Query: 235 AYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---NVPAPAIATDYWRLPP 291
            +FL YL+SPK  HR VGYLEEEA+ +Y+  L++++ G+++      AP IA  Y++LP 
Sbjct: 205 GFFLTYLVSPKTCHRFVGYLEEEAVKTYSCLLQDIEDGHLDAWKEKKAPLIAQTYYKLPE 264

Query: 292 NSTLKDVVLVVRADEAHHRDVNH 314
           ++++ DVV  VRADEA+HRDVNH
Sbjct: 265 DASIYDVVKCVRADEANHRDVNH 287


>gi|320587810|gb|EFX00285.1| alternative oxidase [Grosmannia clavigera kw1407]
          Length = 823

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 97/249 (38%), Positives = 139/249 (55%), Gaps = 36/249 (14%)

Query: 116 YEADLSIDLKK-HHAPTTFSDKMALWTVKSLRWPTDL----------------------- 151
           Y A+  + +K  H  P T  D++A   ++  RW  D                        
Sbjct: 554 YTAEEMLAVKPGHRPPETMGDRLAWRLIRICRWGMDTATGMSSSQQTDVRKPTTAVVAEK 613

Query: 152 -FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMT 210
              + ++  R + LE++A VPGMV GML H +S+R+ +   GWI+ LLEE+ NERMHL+T
Sbjct: 614 PLTEAQWLIRFIFLESIAGVPGMVAGMLRHLRSIRQLKRDNGWIETLLEESFNERMHLLT 673

Query: 211 FMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELD 270
           F+++ +P  + + ++   QGV+FNA FL YLISP+  HR VGYLEEEA+H+YT  L E+D
Sbjct: 674 FLKMCEPGRFMKLMILGAQGVYFNAMFLSYLISPRICHRFVGYLEEEAVHTYTRCLAEMD 733

Query: 271 KGNIE--NVPA---PAIATDYWRLPPN-STLKDVVLVVRADEAHHRDVNHYASDIHYQGR 324
            G     + PA   P IA  YW +P +  T+KD++L +RADEA HR VNH   ++     
Sbjct: 734 AGGTPLWSDPAFKVPEIAVKYWHMPEDRRTMKDLILYIRADEASHRGVNHTLGNLDQN-- 791

Query: 325 QLRESPAPL 333
              E P P 
Sbjct: 792 ---EDPNPF 797


>gi|255943405|ref|XP_002562471.1| Pc18g06440 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587204|emb|CAP94868.1| Pc18g06440 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 331

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 92/216 (42%), Positives = 132/216 (61%), Gaps = 23/216 (10%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTD-------------------LFFQRRYGCRAMMLETV 167
           H    T+ D+ AL TV+ LRW  D                   +  + ++  R + LE+V
Sbjct: 78  HRKAYTWQDRAALGTVRLLRWGMDFVSGYNSRPANTNTLSKAYVMTEEKWITRFVFLESV 137

Query: 168 AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 227
           A VPGMV GML H KS+RR     GWI+ LLEEA NERMHL+TF+++A+P    R +V  
Sbjct: 138 AGVPGMVAGMLRHLKSIRRMRRDNGWIETLLEEAYNERMHLLTFLKLAEPGPAMRFMVLG 197

Query: 228 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIAT 284
            Q VFF+ + L YLISP+  HR VGYLEEEA+ +Y++ +++L+ G++   E + AP +A 
Sbjct: 198 AQWVFFSGFSLAYLISPQICHRFVGYLEEEAVITYSKAIRDLEDGHLPAWEGLQAPEMAI 257

Query: 285 DYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDI 319
            YW++P     ++ ++L VRADEA HRDVNH   ++
Sbjct: 258 KYWQMPEGQRCMRSLLLYVRADEAKHRDVNHTLGNL 293


>gi|150864598|ref|XP_001383483.2| Alternative oxidase, mitochondrial precursor (SHAM-sensitive
           terminal oxidase) (STO1) [Scheffersomyces stipitis CBS
           6054]
 gi|158518684|sp|Q9P414.2|AOX_PICST RecName: Full=Alternative oxidase, mitochondrial; AltName:
           Full=SHAM-sensitive terminal oxidase; Flags: Precursor
 gi|149288858|gb|AAF97475.2| SHAM-sensitive terminal oxidase [Scheffersomyces stipitis]
 gi|149385854|gb|ABN65454.2| Alternative oxidase, mitochondrial precursor (SHAM-sensitive
           terminal oxidase) (STO1) [Scheffersomyces stipitis CBS
           6054]
          Length = 357

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 108/322 (33%), Positives = 161/322 (50%), Gaps = 33/322 (10%)

Query: 26  ILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKEQQREENVQTTGAAAAGGSGNKDEKR 85
           +L+ QT R     L + P +    RS     G    Q    V    A     + +K    
Sbjct: 1   MLSVQTTRAAKLQLGQLPSIAYTARS-----GRLHHQFYSTVAEKTANPTPNTSDKTNIF 55

Query: 86  IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLK-KHHAPTTFSDKMALWTVKS 144
            +     +   + K D +++  +   P   +  +  + +  +H  P TF DKMA   ++ 
Sbjct: 56  DIRTKVYDETDIRKHDDNQFITHPLFPHPTFSQEDCLKVGYEHRPPRTFGDKMAFRGIEL 115

Query: 145 LRWPTDL----------------FFQRRYG-------CRAMMLETVAAVPGMVGGMLLHC 181
           +R   D                 F   RY         R + LE++A VPG V   + H 
Sbjct: 116 VRGSFDFVTGYKKPKTQADIDSGFKGTRYEMTEGKWLTRCIFLESIAGVPGAVASFIRHL 175

Query: 182 KSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYL 241
            SLR  +    WI+ LL+EA NERMHL+TF+++ KP W+ R +++  QGVF N +FL YL
Sbjct: 176 HSLRLLKRDKAWIETLLDEAFNERMHLLTFIKIGKPSWFTRTIIYVGQGVFCNLFFLFYL 235

Query: 242 ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATDYW-RLPPNSTLKD 297
            +PK+ HR VGYLEEEA+ +YT F+ EL  G +   EN+  P IA  YW  L  NS++ D
Sbjct: 236 ANPKYCHRFVGYLEEEAVSTYTHFVHELQSGKLPKFENIKIPTIAWQYWPELTENSSMLD 295

Query: 298 VVLVVRADEAHHRDVNHYASDI 319
           ++L +RADEA HR+VNH  +++
Sbjct: 296 LILRIRADEAKHREVNHTLANL 317


>gi|344232988|gb|EGV64861.1| hypothetical protein CANTEDRAFT_104081 [Candida tenuis ATCC 10573]
          Length = 312

 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 87/216 (40%), Positives = 126/216 (58%), Gaps = 23/216 (10%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFF-------------------QRRYGCRAMMLETV 167
           H  P T SDK+A   +++ R   D F                    + ++  R + LE+V
Sbjct: 59  HRVPITVSDKIASGAIQTFRSCFDFFTGYKHPTKGVSYEGTRFEMTESKWLTRCIFLESV 118

Query: 168 AAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFA 227
           A +PGM    + H  SLR  +    WI+ LL+EA NER+HL+TF+ + KP W+ R  +F 
Sbjct: 119 AGIPGMTAAFIRHLHSLRLLKRDKAWIETLLDEAYNERIHLLTFINLGKPSWFTRFFIFM 178

Query: 228 VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIAT 284
            QGVF N +F  YL  PKF HR VGYLEEEA+ +Y+ F+KELD G +   +++  P +A 
Sbjct: 179 GQGVFCNIFFFNYLFFPKFCHRFVGYLEEEAVSTYSHFIKELDAGKLKKFDDMAIPPVAI 238

Query: 285 DYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
            Y+  L   ST++D++L VRADEA HR+VNH  +++
Sbjct: 239 QYYGTLDEKSTIRDLILCVRADEAKHREVNHTFANL 274


>gi|388582970|gb|EIM23273.1| alternative oxidase, partial [Wallemia sebi CBS 633.66]
          Length = 401

 Score =  177 bits (450), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 84/169 (49%), Positives = 117/169 (69%), Gaps = 3/169 (1%)

Query: 154 QRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFME 213
           ++++  R + LE+VA VPG V  ML H +SLRR +  GG+I  LL EAENERMHLM+F+ 
Sbjct: 177 EKQWLRRFIFLESVAGVPGFVASMLRHLRSLRRMDRDGGYINMLLAEAENERMHLMSFLA 236

Query: 214 VAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN 273
           V KP  + RA+V   QGVFFN +F+ YLI+PK  HR    LEEEA+ +YT  +KE+  G 
Sbjct: 237 VEKPSIWMRAMVLGAQGVFFNLFFVSYLINPKICHRFTAVLEEEAVVTYTRAMKEIKAGY 296

Query: 274 I---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
           +   ++   P+IA  YW+LP +ST+ D+V+VVRADE++HR  NH  S++
Sbjct: 297 VPGWKHKEIPSIARGYWQLPADSTMLDLVMVVRADESNHRFTNHTLSEL 345


>gi|196000520|ref|XP_002110128.1| hypothetical protein TRIADDRAFT_20435 [Trichoplax adhaerens]
 gi|190588252|gb|EDV28294.1| hypothetical protein TRIADDRAFT_20435 [Trichoplax adhaerens]
          Length = 181

 Score =  177 bits (449), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 86/164 (52%), Positives = 112/164 (68%), Gaps = 3/164 (1%)

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
           R + LETVA VPGMV  M  H  SLRR     GWI  LLEEAENERMHL+T + + +P  
Sbjct: 7   RIIFLETVAGVPGMVAAMTRHLHSLRRMRRDYGWIHTLLEEAENERMHLLTALHLKRPGP 66

Query: 220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---N 276
           + RA V   QG+F N + L YLISP+F HR VGYLEEEA+ +YT+ L ++D+G +     
Sbjct: 67  FFRACVILGQGIFVNFFILSYLISPRFCHRFVGYLEEEAVITYTKCLNQIDRGYLPMWAK 126

Query: 277 VPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIH 320
           + AP IA  YW+L P++ ++DV+L +RADEAHHR VNH  + I+
Sbjct: 127 MDAPDIARTYWQLKPDAKMRDVILAIRADEAHHRLVNHTLASIN 170


>gi|51701296|sp|O93853.1|AOX1_CANAL RecName: Full=Alternative oxidase 1, mitochondrial; Flags:
           Precursor
 gi|4090947|gb|AAC98914.1| alternative oxidase [Candida albicans]
          Length = 379

 Score =  177 bits (448), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 101/302 (33%), Positives = 153/302 (50%), Gaps = 31/302 (10%)

Query: 51  STLALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCF 110
           +T+     K    E+N++  G           +  + +  G+EA     DD        +
Sbjct: 49  TTVGNSNPKSPIDEDNLEKPGTIPTKHKPFNIQTEVYNKAGIEA----NDDDKFLTKPTY 104

Query: 111 RPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL------------------- 151
           R  +  EA +      H  P T  DK++ +     R   DL                   
Sbjct: 105 RHEDFTEAGVYRVHVTHRPPRTIGDKISCYGTLFFRKCFDLVTGYAVPDPDKPDQYKGTR 164

Query: 152 --FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 209
               + ++  R + LE++A VPG V G + H  SLR       WI+ L +EA NERMHL+
Sbjct: 165 WEMTEEKWMTRCIFLESIAGVPGSVAGFVRHLHSLRMLTRDKAWIETLHDEAYNERMHLL 224

Query: 210 TFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKEL 269
           TF+++ KP W+ R++++  QGVF N +FL YL++P++ HR VGYLEEEA+ +YT  + EL
Sbjct: 225 TFIKIGKPSWFTRSIIYIGQGVFTNIFFLVYLMNPRYCHRFVGYLEEEAVRTYTHLIDEL 284

Query: 270 DKGN----IENVPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNH-YASDIHYQG 323
           D  N     + +P P IA  YW  L P S+ KD++L +RADEA HR++NH +A+   +Q 
Sbjct: 285 DDPNKLPDFQKLPIPNIAVQYWPELTPESSFKDLILRIRADEAKHREINHTFANLEQWQD 344

Query: 324 RQ 325
           R 
Sbjct: 345 RN 346


>gi|388853396|emb|CCF53016.1| related to alternative oxidase precursor, mitochondrial [Ustilago
           hordei]
          Length = 417

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 86/178 (48%), Positives = 113/178 (63%), Gaps = 8/178 (4%)

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
           R + LET+A VPGMV     H +SLR  +   GWI  LL++AENERMHL+TFM +AKP  
Sbjct: 205 RIIFLETIAGVPGMVAATCRHLQSLRLMKRDKGWIHTLLQDAENERMHLLTFMHLAKPGT 264

Query: 220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---EN 276
             RA     QGVF+N +F+ YL SP+ AHR VG LEEEA+ +Y+  L+++ +G +   EN
Sbjct: 265 IARAFALLAQGVFYNLFFIFYLFSPRIAHRFVGVLEEEAVLTYSCILEDIKQGRLPEWEN 324

Query: 277 VPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLG 334
           VPAP IA  YW+L   + L DV+  VRADEA HR +NH  + + Y     +E P P  
Sbjct: 325 VPAPEIAKHYWQLGDQALLVDVIRAVRADEATHRCINHTLASLDY-----KEDPNPFA 377


>gi|392577482|gb|EIW70611.1| hypothetical protein TREMEDRAFT_28860 [Tremella mesenterica DSM
           1558]
          Length = 363

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 93/181 (51%), Positives = 120/181 (66%), Gaps = 3/181 (1%)

Query: 142 VKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEA 201
           ++ LR    L   + +  R ++LE+ A VPGMV G L H +SLRR    GGWI  LLEEA
Sbjct: 127 IEELRAKGLLLSDKAWLMRIILLESFAGVPGMVAGTLRHLRSLRRLRRDGGWIHTLLEEA 186

Query: 202 ENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHS 261
           ENERMHL+TFM +A+P W  R  V   QGV +N  F  YLI+PK AHR V  LEEEA+ +
Sbjct: 187 ENERMHLLTFMTIAQPSWLTRVAVLGAQGVMYNLLFATYLITPKTAHRFVAALEEEAVKT 246

Query: 262 YTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASD 318
           YT  ++++ KG +   ++VPAP IA DYWRLP ++ L DV+  VRADEA HR VNH  +D
Sbjct: 247 YTHCVEDMQKGLVPEWDDVPAPQIAIDYWRLPQSAKLIDVIRAVRADEATHRFVNHSLAD 306

Query: 319 I 319
           +
Sbjct: 307 L 307


>gi|68464765|ref|XP_723460.1| constitutive alternative oxidase [Candida albicans SC5314]
 gi|68465142|ref|XP_723270.1| constitutive alternative oxidase [Candida albicans SC5314]
 gi|46445297|gb|EAL04566.1| constitutive alternative oxidase [Candida albicans SC5314]
 gi|46445494|gb|EAL04762.1| constitutive alternative oxidase [Candida albicans SC5314]
          Length = 379

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 101/302 (33%), Positives = 153/302 (50%), Gaps = 31/302 (10%)

Query: 51  STLALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCF 110
           +T+     K    E+N++  G           +  + +  G+EA     DD        +
Sbjct: 49  TTVGNSNPKSPIDEDNLEKPGTIPTKHKPFNIQTEVYNKAGIEA----NDDDKFLTKPTY 104

Query: 111 RPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL------------------- 151
           R  +  EA +      H  P T  DK++ +     R   DL                   
Sbjct: 105 RHEDFTEAGVYRVHVTHRPPRTIGDKISCYGTLFFRKCFDLVTGYAVPDPDKPDQYKGTR 164

Query: 152 --FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 209
               + ++  R + LE++A VPG V G + H  SLR       WI+ L +EA NERMHL+
Sbjct: 165 WEMTEGKWMTRCIFLESIAGVPGSVAGFIRHLHSLRMLTRDKAWIETLHDEAYNERMHLL 224

Query: 210 TFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKEL 269
           TF+++ KP W+ R++++  QGVF N +FL YL++P++ HR VGYLEEEA+ +YT  + EL
Sbjct: 225 TFIKIGKPSWFTRSIIYIGQGVFTNIFFLVYLMNPRYCHRFVGYLEEEAVRTYTHLIDEL 284

Query: 270 DKGN----IENVPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNH-YASDIHYQG 323
           D  N     + +P P IA  YW  L P S+ KD++L +RADEA HR++NH +A+   +Q 
Sbjct: 285 DDPNKLPDFQKLPIPNIAVQYWPELTPESSFKDLILRIRADEAKHREINHTFANLEQWQD 344

Query: 324 RQ 325
           R 
Sbjct: 345 RN 346


>gi|322711578|gb|EFZ03151.1| Alternative oxidase [Metarhizium anisopliae ARSEF 23]
          Length = 363

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/190 (44%), Positives = 120/190 (63%), Gaps = 20/190 (10%)

Query: 159 CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 218
            R + LE++A VPGMVGGML H  SLRR +   GWI+ LLEE+ NERMHL+TFM++ +P 
Sbjct: 154 VRFVFLESIAGVPGMVGGMLRHLSSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPG 213

Query: 219 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE--- 275
           W+ + ++   QGVFFNA F+ YL+ P+  HR VGYLEEEA+H+YT  ++E++ G++    
Sbjct: 214 WFMKLMIIGAQGVFFNALFITYLLHPRIVHRFVGYLEEEAVHTYTRAIREIEDGHLPKWA 273

Query: 276 ----NVPAPAIA-------TDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQG 323
                +P  A+          YW +P  N T+KD++L +RADEA HR VNH   +++   
Sbjct: 274 DAKFQIPDIAVQGALFSHIVQYWNMPEGNRTMKDLILYIRADEAGHRGVNHTLGNLNQT- 332

Query: 324 RQLRESPAPL 333
               E P P 
Sbjct: 333 ----EDPNPF 338


>gi|42733304|dbj|BAD11307.1| alternative oxidase [Trypanosoma vivax]
          Length = 328

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 90/209 (43%), Positives = 122/209 (58%), Gaps = 10/209 (4%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC--------RAMMLETVAAVPGMVGGML 178
           H       D +A   V++ RW  D F   R+G         R + LETVA VPGMVGGML
Sbjct: 78  HKPAEGIVDTLAYRLVRTCRWAFDTFSLYRFGSLTEQKVINRCLFLETVAGVPGMVGGML 137

Query: 179 LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 238
            H  SLR+     GWI  LL EAENERMHLMTF+E+ +P    R  +   Q + ++   +
Sbjct: 138 RHLTSLRQMRRDKGWINTLLVEAENERMHLMTFIELRQPGVVFRLSIKITQAIMYSFLLI 197

Query: 239 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENV--PAPAIATDYWRLPPNSTLK 296
            Y+ SP+F HR VGYLEEEA+ +YT  L+ +D G +  +    P +A  YW L  ++T +
Sbjct: 198 AYITSPRFVHRFVGYLEEEAVVTYTGILRAIDDGRLPPMKNAVPDVARVYWGLNKDATFR 257

Query: 297 DVVLVVRADEAHHRDVNHYASDIHYQGRQ 325
           D++ V+RADEA HR VNH  +D+H +  Q
Sbjct: 258 DLINVIRADEAEHRVVNHTFADMHAKRLQ 286


>gi|238878670|gb|EEQ42308.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 379

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 101/302 (33%), Positives = 153/302 (50%), Gaps = 31/302 (10%)

Query: 51  STLALGGEKEQQREENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCF 110
           +T+     K    E+N++  G           +  + +  G+EA     DD        +
Sbjct: 49  TTVGNSNPKSPIDEDNLEKPGTIPTKHKPFNIQTEVYNKAGIEA----NDDDKFLTKPTY 104

Query: 111 RPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL------------------- 151
           R  +  EA +      H  P T  DK++ +     R   DL                   
Sbjct: 105 RHEDFTEAGVYRVHVTHRPPRTIGDKISCYGTLFFRKCFDLVTGYAVPDPDKPDQYKGTR 164

Query: 152 --FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 209
               + ++  R + LE++A VPG V G + H  SLR       WI+ L +EA NERMHL+
Sbjct: 165 WEMTEGKWMTRCIFLESIAGVPGSVAGFVRHLHSLRMLTRDKAWIETLHDEAYNERMHLL 224

Query: 210 TFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKEL 269
           TF+++ KP W+ R++++  QGVF N +FL YL++P++ HR VGYLEEEA+ +YT  + EL
Sbjct: 225 TFIKIGKPSWFTRSIIYIGQGVFTNIFFLVYLMNPRYCHRFVGYLEEEAVRTYTHLIDEL 284

Query: 270 DKGN----IENVPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNH-YASDIHYQG 323
           D  N     + +P P IA  YW  L P S+ KD++L +RADEA HR++NH +A+   +Q 
Sbjct: 285 DDPNKLPDFQKLPIPNIAVQYWPELTPESSFKDLILRIRADEAKHREINHTFANLEQWQD 344

Query: 324 RQ 325
           R 
Sbjct: 345 RN 346


>gi|62241308|dbj|BAD93711.1| alternative oxidase 1b [Candida maltosa]
          Length = 348

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/169 (47%), Positives = 116/169 (68%), Gaps = 5/169 (2%)

Query: 156 RYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVA 215
           ++  R + LE+VA VPG V G L H  SLR       WI+ L +EA NERMHL+TF+++ 
Sbjct: 140 KWMTRCIFLESVAGVPGSVAGFLRHLHSLRMLRRDKAWIETLYDEAYNERMHLLTFIKIG 199

Query: 216 KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELD-KGNI 274
           KP W+ R++++  QGVF N +FL YL++P++ HR VGYLEEEA+ +YT  ++E+D KG +
Sbjct: 200 KPSWFTRSIIYVGQGVFTNVFFLLYLLNPRYCHRFVGYLEEEAVRTYTHLIEEIDTKGKL 259

Query: 275 ---ENVPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
              EN+  P IA  YW  L P ST +D++L +RADEA HR+VNH  +++
Sbjct: 260 PGFENMKIPEIAVQYWPELTPESTFRDLILRIRADEAKHREVNHTFANL 308


>gi|255728095|ref|XP_002548973.1| alternative oxidase 1, mitochondrial precursor [Candida tropicalis
           MYA-3404]
 gi|240133289|gb|EER32845.1| alternative oxidase 1, mitochondrial precursor [Candida tropicalis
           MYA-3404]
          Length = 379

 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 93/240 (38%), Positives = 134/240 (55%), Gaps = 36/240 (15%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC-----------------------RAMM 163
           H  P T  DK++ +   + R   D  F   Y C                       R + 
Sbjct: 121 HRPPVTLGDKISYYGTMTARKCFD--FVTGYACPLPDKPHMYDGTRWEMTEGKWMTRVIF 178

Query: 164 LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERA 223
           LE+VA VPG V G + H  SLR       WI++L +EA NERMHL+TF+++ KP W+ R 
Sbjct: 179 LESVAGVPGSVAGFIRHLHSLRMLTRDKAWIESLQDEAYNERMHLLTFIKIGKPSWFTRT 238

Query: 224 LVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDK----GNIENVPA 279
           +++  QGVF N +F  YL++P++ HR VGYLEEEA+ +YT  L ELDK     N +N+  
Sbjct: 239 IIYIGQGVFTNIFFFLYLMNPRYCHRFVGYLEEEAVRTYTHLLDELDKPGKLPNFQNMQI 298

Query: 280 PAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDIH-YQGR-----QLRESPAP 332
           P IA DYW  L   S+ KD+V ++RADE+ HR+VNH  +++  ++ R     Q+++ P P
Sbjct: 299 PTIAVDYWPSLSEESSFKDLVAIIRADESKHREVNHTLANLDTWKDRNPFALQIKDDPNP 358


>gi|358378712|gb|EHK16393.1| hypothetical protein TRIVIDRAFT_216965 [Trichoderma virens Gv29-8]
          Length = 359

 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 84/181 (46%), Positives = 117/181 (64%), Gaps = 11/181 (6%)

Query: 159 CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 218
            R + LE++A VPGMVGGML H  SLR  +   GWI+ LLEE+ NERMHL+TFM + +P 
Sbjct: 159 IRFVFLESIAGVPGMVGGMLRHLSSLRGMKRDNGWIETLLEESYNERMHLLTFMTMCEPG 218

Query: 219 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---- 274
            + + ++   QGVFFN+ F+ YL+ PK  HR VGYLEEEA+H+YT  + E+++G++    
Sbjct: 219 LFMKLMIIGAQGVFFNSLFVAYLLHPKIVHRFVGYLEEEAVHTYTRAIAEIEEGHLPKWA 278

Query: 275 -ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAP 332
                 P IA  YW +P  N T+KD++L +RADEA HR VNH   +++      +E P P
Sbjct: 279 DPKFRIPDIAVQYWNMPEGNRTMKDLILYIRADEASHRGVNHTLGNLNQ-----KEDPNP 333

Query: 333 L 333
            
Sbjct: 334 F 334


>gi|19547976|gb|AAL87459.1| alternative oxidase [Aspergillus fumigatus]
          Length = 149

 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 82/149 (55%), Positives = 108/149 (72%), Gaps = 4/149 (2%)

Query: 167 VAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVF 226
           VA VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V 
Sbjct: 1   VAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKLAEPGWFMRLMVL 60

Query: 227 AVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIA 283
             QGVFFN +FL YLISP+  HR VGYLEEEA+ +YT  +K+++ G +   E + AP IA
Sbjct: 61  GAQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVITYTRAIKDIETGKLPDWEKLDAPEIA 120

Query: 284 TDYWRLPPNS-TLKDVVLVVRADEAHHRD 311
             YW +P     ++D++L VRADEA HR+
Sbjct: 121 VQYWNMPEGQRKMRDLLLYVRADEAKHRE 149


>gi|209880133|ref|XP_002141506.1| alternative oxidase family protein [Cryptosporidium muris RN66]
 gi|209557112|gb|EEA07157.1| alternative oxidase family protein [Cryptosporidium muris RN66]
          Length = 336

 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 96/199 (48%), Positives = 120/199 (60%), Gaps = 10/199 (5%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYG------CRAMM-LETVAAVPGMVGGMLL 179
           H  P T  D++A  +V  LR   DL    +YG      CR ++ LET+A VPGMVG M+ 
Sbjct: 122 HITPETLIDRLAYNSVLFLRKSFDLLTGYKYGHDERKWCRRIVFLETIAGVPGMVGAMVR 181

Query: 180 HCKSLRRFEHSGGWIKALLEEAENERMHLM-TFMEVAKPKWYERALVFAVQGVFFNAYFL 238
           H  SLRR E   GWI  LLEEAENERMHLM + +    P  + R  V   Q  F   Y L
Sbjct: 182 HLHSLRRMERDYGWIHTLLEEAENERMHLMISLLLRHPPSLFVRLSVLGAQFGFLIYYTL 241

Query: 239 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENV--PAPAIATDYWRLPPNSTLK 296
            Y ISPK+ HR VGYLEEEA+ +YT  + ++D G +     PAP  A  Y+ LP ++TLK
Sbjct: 242 CYAISPKYCHRFVGYLEEEAVRTYTRLISDIDLGKLPEFTSPAPKYAKLYYGLPKDATLK 301

Query: 297 DVVLVVRADEAHHRDVNHY 315
           DV L +R DE+HHRDVNH+
Sbjct: 302 DVFLAMRRDESHHRDVNHH 320


>gi|342871326|gb|EGU73992.1| hypothetical protein FOXB_15497 [Fusarium oxysporum Fo5176]
          Length = 345

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 86/184 (46%), Positives = 118/184 (64%), Gaps = 15/184 (8%)

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
           R + LE++A VPGMVGGML H  SLRR +   GWI+ LLEE+ NERMHL+TFM++ +P W
Sbjct: 142 RFIFLESIAGVPGMVGGMLRHLSSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGW 201

Query: 220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI----- 274
           + + ++   QGVFFN  F+ YL SPK  HR VGYLEEEA+H+YT  +KE+++G++     
Sbjct: 202 FMKVMIIGAQGVFFNGLFVCYLFSPKIVHRFVGYLEEEAVHTYTRCIKEIEEGHLPKWSD 261

Query: 275 ENVPAPAIATDYWRLPPNS-----TLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRES 329
            +   P IA   + L   S     T+KD++L +RADEA HR VNH   +++       E 
Sbjct: 262 PSFRIPDIAIQVFGLHLQSTFGVHTMKDLILYIRADEAVHRGVNHTLGNLNQN-----ED 316

Query: 330 PAPL 333
           P P 
Sbjct: 317 PNPF 320


>gi|358400759|gb|EHK50085.1| hypothetical protein TRIATDRAFT_51260 [Trichoderma atroviride IMI
           206040]
          Length = 359

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 80/168 (47%), Positives = 114/168 (67%), Gaps = 6/168 (3%)

Query: 159 CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 218
            R + LE++A VPGMVGGML H +SLR  +   GWI+ LLEE+ NERMHL+TFM + +P 
Sbjct: 159 VRFVFLESIAGVPGMVGGMLRHLRSLRGMKRDNGWIETLLEESYNERMHLLTFMTMCEPG 218

Query: 219 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---- 274
            + + ++   QGVFFN+ F+ YL+ PK  HR VGYLEEEA+H+YT  + E+++G++    
Sbjct: 219 LFMKLMIIGAQGVFFNSLFVAYLLHPKIVHRFVGYLEEEAVHTYTRAIHEIEEGHLPRWT 278

Query: 275 -ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIH 320
                 P IA  YW +P  + T+KD++L +RADEA HR VNH   +++
Sbjct: 279 DPKFRIPDIAVQYWHMPEGHRTMKDLILYIRADEAGHRGVNHTLGNLN 326


>gi|241949571|ref|XP_002417508.1| (constitutive) alternative oxidase 1, mitochondrial precursor,
           putative [Candida dubliniensis CD36]
 gi|223640846|emb|CAX45161.1| (constitutive) alternative oxidase 1, mitochondrial precursor,
           putative [Candida dubliniensis CD36]
          Length = 389

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 102/299 (34%), Positives = 154/299 (51%), Gaps = 51/299 (17%)

Query: 66  NVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLK 125
           N+QT     AG   N D+K + +      P    +D +E           Y   ++    
Sbjct: 89  NIQTEIYNQAGIEANDDDKFLTN------PTYRHEDFTEAG--------VYRVHVT---- 130

Query: 126 KHHAPTTFSDKMALWTVKSLRWPTDL---------------------FFQRRYGCRAMML 164
            H  P T  DK++ +     R   DL                       + ++  R + L
Sbjct: 131 -HRPPRTIGDKISCYGTLFFRKCFDLVTGYAVPDPDKPDQYKGTRWEMTEGKWLTRCIFL 189

Query: 165 ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERAL 224
           E++A VPG V G + H  SLR       WI+ L +EA NERMHL+TF+++ KP W+ R++
Sbjct: 190 ESIAGVPGSVAGFVRHLHSLRMLTRDKAWIETLHDEAYNERMHLLTFIKIGKPSWFTRSI 249

Query: 225 VFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN----IENVPAP 280
           ++  QGVF N +FL YL++P++ HR VGYLEEEA+ +YT  + EL+  N     E +  P
Sbjct: 250 IYIGQGVFTNIFFLVYLMNPRYCHRFVGYLEEEAVRTYTHLIHELNDPNKLPDFEKLSIP 309

Query: 281 AIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNH-YASDIHYQGR-----QLRESPAP 332
            IA  YW  L P+S+ KD++L +RADEA HR++NH +A+   +Q R     Q+++S  P
Sbjct: 310 TIAVQYWPELTPDSSFKDLILRIRADEAKHREINHTFANLEQWQDRNPFALQIKDSDKP 368


>gi|294655674|ref|XP_457848.2| DEHA2C03828p [Debaryomyces hansenii CBS767]
 gi|199430515|emb|CAG85893.2| DEHA2C03828p [Debaryomyces hansenii CBS767]
          Length = 338

 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 77/165 (46%), Positives = 113/165 (68%), Gaps = 4/165 (2%)

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
           R + LE++A VPGMV   + H  SLR       WI+ LL+EA NERMHL+TF+++ +P W
Sbjct: 135 RCIFLESIAGVPGMVAAFIRHLHSLRLLRRDKAWIETLLDEAYNERMHLLTFIKLGRPSW 194

Query: 220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---EN 276
           + R++++  QGVF N +F+ YLI+PK+ HR VGYLEEEA+ +YT  L+EL  G +   +N
Sbjct: 195 FTRSIIYIGQGVFCNLFFMCYLINPKYCHRFVGYLEEEAVSTYTHLLEELKMGKLKEFDN 254

Query: 277 VPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDIH 320
           +  PAI+  YW  L   S+  D++L +RADEA HR+VNH  ++++
Sbjct: 255 IQIPAISWQYWPELDEKSSFTDLILRIRADEAKHREVNHTLANLN 299


>gi|93008053|gb|ABE97458.1| mitochondrial alternative oxidase [Komagataella pastoris]
          Length = 362

 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 89/238 (37%), Positives = 138/238 (57%), Gaps = 26/238 (10%)

Query: 112 PWEAYEADLSIDLK-KHHAPTTFSDKMALWTVKSLRWPTDLF------------------ 152
           P   Y  DL   +  +H  PT   DK+A   ++SLR   D F                  
Sbjct: 87  PHHGYRQDLMEKIHYEHREPTLIRDKLAFGLMRSLRVCFDFFSGYKHPKTKEGLEKLTPA 146

Query: 153 -FQ---RRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHL 208
            +Q    ++  R ++LE++A VPG V   L H +SLR  +    +I+ L +EA NERMHL
Sbjct: 147 TYQMTPEKWLTRFIILESIAGVPGSVASFLRHLQSLRLLKRDKAFIQTLQDEAYNERMHL 206

Query: 209 MTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 268
           +TF+E+ KP  + + L++A QGVF N +F  Y+++P   HR VGYLEEEA+++YT  L++
Sbjct: 207 LTFLEIGKPGPFMKVLLYASQGVFCNLFFFTYMLAPNACHRFVGYLEEEAVYTYTTCLED 266

Query: 269 LDKG---NIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQG 323
           +++G   +IE+   P IA DYW L  ++ ++D++  +RADEA HR+VNH  +++   G
Sbjct: 267 IERGLLPDIEHFKVPKIAKDYWHLSEDAKMRDLISYIRADEAKHREVNHTFANLKLDG 324


>gi|8676907|gb|AAF70262.2| alternative oxidase [Podospora anserina]
          Length = 146

 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 79/146 (54%), Positives = 107/146 (73%), Gaps = 4/146 (2%)

Query: 169 AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
            VPGMV GML H +SLR+ +   GWI+ LLEEA NERMHL+TF+++A+P W+ R +V   
Sbjct: 1   GVPGMVAGMLRHLRSLRKMKRDNGWIETLLEEAFNERMHLLTFLKLAEPGWFMRVMVIGA 60

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAPAIATD 285
           QGVFFN +FL YLISP+  HR VGYLEEEA+ +YT  ++EL+ GN+   +++ AP IA  
Sbjct: 61  QGVFFNGFFLSYLISPRICHRFVGYLEEEAVITYTRAIEELEAGNLPEWKDLDAPEIAVK 120

Query: 286 YWRLPPNS-TLKDVVLVVRADEAHHR 310
           YW++P     +KD++L +RADEA HR
Sbjct: 121 YWQMPEGQRKMKDLLLFIRADEAKHR 146


>gi|254571053|ref|XP_002492636.1| hypothetical protein [Komagataella pastoris GS115]
 gi|238032434|emb|CAY70457.1| Hypothetical protein PAS_chr3_0408 [Komagataella pastoris GS115]
 gi|328353360|emb|CCA39758.1| hypothetical protein PP7435_Chr3-0805 [Komagataella pastoris CBS
           7435]
          Length = 362

 Score =  171 bits (432), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 89/238 (37%), Positives = 138/238 (57%), Gaps = 26/238 (10%)

Query: 112 PWEAYEADLSIDLK-KHHAPTTFSDKMALWTVKSLRWPTDLF------------------ 152
           P   Y  DL   +  +H  PT   DK+A   ++SLR   D F                  
Sbjct: 87  PHHGYRQDLMEKIHYEHREPTLIRDKLAFGLMRSLRVCFDFFSGYKHPKTKEGLEKLTPA 146

Query: 153 -FQ---RRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHL 208
            +Q    ++  R ++LE++A VPG V   L H +SLR  +    +I+ L +EA NERMHL
Sbjct: 147 TYQMTPEKWLTRFIILESIAGVPGSVASFLRHLQSLRLLKRDKAFIQTLQDEAYNERMHL 206

Query: 209 MTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 268
           +TF+E+ KP  + + L++A QGVF N +F  Y+++P   HR VGYLEEEA+++YT  L++
Sbjct: 207 LTFLEIGKPGPFMKVLLYASQGVFCNLFFFTYMLAPNACHRFVGYLEEEAVYTYTTCLED 266

Query: 269 LDKG---NIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQG 323
           +++G   +IE+   P IA DYW L  ++ ++D++  +RADEA HR+VNH  +++   G
Sbjct: 267 IERGLLPDIEHFKVPKIAKDYWHLSEDAKMRDLISYIRADEAKHREVNHTFANLKLDG 324


>gi|116196990|ref|XP_001224307.1| hypothetical protein CHGG_05093 [Chaetomium globosum CBS 148.51]
 gi|88181006|gb|EAQ88474.1| hypothetical protein CHGG_05093 [Chaetomium globosum CBS 148.51]
          Length = 265

 Score =  171 bits (432), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 84/167 (50%), Positives = 112/167 (67%), Gaps = 6/167 (3%)

Query: 159 CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 218
            R + LETVA +PG V G L H  S+RRF+   GWIK LLEE+ NERMHLMTF+ + +P 
Sbjct: 53  VRFVFLETVAGIPGAVAGGLRHLHSIRRFKLDQGWIKTLLEESYNERMHLMTFLAMYRPG 112

Query: 219 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIEN-- 276
              R +VFA QG+F+N  F+GYLIS  F HR+VGYLE+EA+ +YT+ L E+DKG +    
Sbjct: 113 RLMRFMVFAAQGIFYNTMFIGYLISLGFCHRLVGYLEDEAVATYTKCLAEMDKGWLPQWT 172

Query: 277 ---VPAPAIATDYWRLPPN-STLKDVVLVVRADEAHHRDVNHYASDI 319
                 P IA  YW++P    T++D++L +RADEA HR VNH   ++
Sbjct: 173 DPGFKIPDIAVQYWKMPEGRRTMRDLILYIRADEASHRGVNHTLGNL 219


>gi|149189352|ref|ZP_01867637.1| alternative oxidase [Vibrio shilonii AK1]
 gi|148836710|gb|EDL53662.1| alternative oxidase [Vibrio shilonii AK1]
          Length = 149

 Score =  170 bits (431), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 79/137 (57%), Positives = 102/137 (74%)

Query: 182 KSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYL 241
           K+LRR     GWI+ LL+EAENERMHLM F+++AKP W ER +V   QGVF   Y + YL
Sbjct: 1   KALRRMRDDEGWIRELLDEAENERMHLMIFLDIAKPSWLERLIVLLGQGVFIVVYSIIYL 60

Query: 242 ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLV 301
           +S K AHR+VGY EEEA  SYTE+L+++D+G IEN+PAP IA DY++L  ++ L+DVVL 
Sbjct: 61  LSSKVAHRVVGYFEEEACKSYTEYLEKIDEGYIENIPAPQIAIDYYQLADDALLRDVVLR 120

Query: 302 VRADEAHHRDVNHYASD 318
           +R DEA HRD NH  +D
Sbjct: 121 IRQDEAGHRDRNHGFAD 137


>gi|448091414|ref|XP_004197325.1| Piso0_004572 [Millerozyma farinosa CBS 7064]
 gi|448095979|ref|XP_004198356.1| Piso0_004572 [Millerozyma farinosa CBS 7064]
 gi|359378747|emb|CCE85006.1| Piso0_004572 [Millerozyma farinosa CBS 7064]
 gi|359379778|emb|CCE83975.1| Piso0_004572 [Millerozyma farinosa CBS 7064]
          Length = 346

 Score =  170 bits (431), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 88/220 (40%), Positives = 125/220 (56%), Gaps = 27/220 (12%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL----------------FFQRRYG-------CRAMM 163
           H  P T  DK+    ++ +RW  D                 F   RY         R + 
Sbjct: 87  HRVPDTMGDKITYKAIQFVRWSFDFVTGYKKPHTPEEKLHSFAGTRYEMNEGKWLTRVIF 146

Query: 164 LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERA 223
           LE+VA VPGMV   + H  SLR  +    WI+ LL+EA NERMHL+TFM++ +P W+ + 
Sbjct: 147 LESVAGVPGMVAAFIRHLHSLRLLKRDKAWIETLLDEAYNERMHLLTFMKLGRPSWFTKL 206

Query: 224 LVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAP 280
           +V+  QGVF N +F  YL++PK+ HR VGYLEEEA+ +Y+  L ELD G +   + V  P
Sbjct: 207 IVYIGQGVFCNLFFFAYLVNPKYCHRFVGYLEEEAVSTYSHLLDELDAGKLPRFDEVKIP 266

Query: 281 AIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
            I+  YW  L  +S+  D+V ++RADEA HR+VNH  +++
Sbjct: 267 EISWHYWTELNEHSSFHDLVSLIRADEAKHREVNHTLANL 306


>gi|358060729|dbj|GAA93500.1| hypothetical protein E5Q_00141 [Mixia osmundae IAM 14324]
          Length = 401

 Score =  170 bits (430), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 166/348 (47%), Gaps = 60/348 (17%)

Query: 10  FSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKEQQREENVQT 69
           F   T RT +    +R  +    + L+T LV    L    R +++   +    R +   +
Sbjct: 24  FCAPTKRTLTLATRSRSDSLANGKPLTTILVTPQGL----RRSISTVQDSLHPRSQTAAS 79

Query: 70  TGAAAAGGSG--NKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKH 127
               A+  S   ++D ++IV  W +  P   KD+    K                    H
Sbjct: 80  ASQLASVPSSEVSEDNRKIVEDWLLFHPTYTKDEVEAVK------------------VVH 121

Query: 128 HAPTTFSDKMALWTVKSLRWPTD-----------------------LFFQ--RRYGC--- 159
            A  T SD++A W + ++RW  D                       L  Q  R  G    
Sbjct: 122 RANLTLSDRVADWAIGAIRWTFDAATGYAHFDAKKADELAKKRGATLSLQELREAGLAMS 181

Query: 160 ------RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFME 213
                 R + LET+A VPG    +L H KSLR  E  GGWI  LL+E+ENER+HL +F+E
Sbjct: 182 PKLWMRRFIFLETIAGVPGSAAAILRHLKSLRTMERDGGWIHTLLQESENERIHLFSFLE 241

Query: 214 VAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN 273
           + KP  + R +  A QGVF +A+ L Y+ISP+  HR VG LEE+A+ +YT  + E+  G 
Sbjct: 242 ITKPGRFMRLMTMAAQGVFTSAFALAYVISPRICHRFVGKLEEQAVLTYTLAIDEIKAGR 301

Query: 274 IE--NVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
           +   +  AP IA +YWR+ P +T  D++  +RADEA HR +NH  +D+
Sbjct: 302 LPEFDRKAPEIAINYWRMQPAATFLDMLYQIRADEATHRFINHSLADL 349


>gi|406601822|emb|CCH46595.1| Alternative oxidase, mitochondrial [Wickerhamomyces ciferrii]
          Length = 352

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 80/170 (47%), Positives = 114/170 (67%), Gaps = 4/170 (2%)

Query: 154 QRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFME 213
           + ++  R + LE++A VPGMV   + H  S+R  +    WI+ LL+EA NERMHL+TFM+
Sbjct: 141 EEKWLTRVIFLESIAGVPGMVAAFVRHLHSIRLLKRDKAWIETLLDEAYNERMHLLTFMK 200

Query: 214 VAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN 273
           +  P W+ R +++  QGVF N +FL YLI P++ HR VGYLEEEA+ +YT  +K+LD   
Sbjct: 201 LGNPSWFTRLIIYVGQGVFCNLFFLIYLIRPRYCHRFVGYLEEEAVSTYTHLIKDLDAKR 260

Query: 274 I---ENVPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
           +   +NV  P IA  YW  L  NST +D+VL VRADE+ HR+VNH  +++
Sbjct: 261 LPRFDNVKLPEIAWVYWTSLDENSTFRDLVLRVRADESKHREVNHTLANL 310


>gi|299752789|ref|XP_001832846.2| alternative oxidase [Coprinopsis cinerea okayama7#130]
 gi|298410001|gb|EAU88999.2| alternative oxidase [Coprinopsis cinerea okayama7#130]
          Length = 362

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 84/184 (45%), Positives = 113/184 (61%), Gaps = 23/184 (12%)

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW--------------------IKALLE 199
           R + LET+A VPGMV   + H +SLR      GW                    I   LE
Sbjct: 136 RILFLETIAGVPGMVAATIRHLQSLRLMRRDNGWYGLNQRLRGMVGVLNACFHRIHTCLE 195

Query: 200 EAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAI 259
           EAENERMHLMTFM + +P    RA++ A QGVF+N +FL Y+ISPK  HR VGYLEEEA+
Sbjct: 196 EAENERMHLMTFMTLRRPSLPFRAIILAAQGVFYNLFFLSYIISPKTCHRFVGYLEEEAV 255

Query: 260 HSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYA 316
           ++YT+ + EL+ G I    + PAP I+ DYWRL P++ + D++  VR+DE  HR VNH  
Sbjct: 256 YTYTKCINELEAGLIPEWTSKPAPEISIDYWRLSPDAKMLDLLYAVRSDETTHRFVNHSL 315

Query: 317 SDIH 320
           ++++
Sbjct: 316 ANLN 319


>gi|51701359|sp|Q9UV71.1|AOX2_CANAL RecName: Full=Alternative oxidase 2, mitochondrial; Flags:
           Precursor
 gi|6650742|gb|AAF21993.1|AF116872_1 alternative oxidase [Candida albicans]
          Length = 365

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/169 (46%), Positives = 113/169 (66%), Gaps = 5/169 (2%)

Query: 156 RYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVA 215
           ++  R + LE+VA VPG V G L H  SLR       WI+ LL+EA NERMHL+TF+++ 
Sbjct: 157 KWLTRCIFLESVAGVPGSVAGFLRHLHSLRMLRRDKAWIETLLDEAYNERMHLLTFIKIG 216

Query: 216 KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELD-KGNI 274
           KP W+ R++++  QGVF N +FL YL++P++ HR VGYLEEEA+ +Y+  L EL   G +
Sbjct: 217 KPSWFTRSIIYVGQGVFTNVFFLLYLLNPRYCHRFVGYLEEEAVRTYSHLLDELAVPGKL 276

Query: 275 ---ENVPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
              E +  P +A  YW  L P S+ KD++L +RADEA HR+VNH  +++
Sbjct: 277 PAFETMKIPEVAVQYWPELTPKSSFKDLILRIRADEAKHREVNHTFANL 325


>gi|238878671|gb|EEQ42309.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 365

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/169 (46%), Positives = 113/169 (66%), Gaps = 5/169 (2%)

Query: 156 RYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVA 215
           ++  R + LE+VA VPG V G L H  SLR       WI+ LL+EA NERMHL+TF+++ 
Sbjct: 157 KWLTRCIFLESVAGVPGSVAGFLRHLHSLRMLRRDKAWIETLLDEAYNERMHLLTFIKIG 216

Query: 216 KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELD-KGNI 274
           KP W+ R++++  QGVF N +FL YL++P++ HR VGYLEEEA+ +Y+  L EL   G +
Sbjct: 217 KPSWFTRSIIYVGQGVFTNVFFLLYLLNPRYCHRFVGYLEEEAVRTYSHLLDELAVPGKL 276

Query: 275 ---ENVPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
              E +  P +A  YW  L P S+ KD++L +RADEA HR+VNH  +++
Sbjct: 277 PAFETMKIPEVAVQYWPELTPKSSFKDLILRIRADEAKHREVNHTFANL 325


>gi|68465140|ref|XP_723269.1| inducible alternative oxidase 2 [Candida albicans SC5314]
 gi|46445296|gb|EAL04565.1| inducible alternative oxidase 2 [Candida albicans SC5314]
          Length = 365

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/169 (46%), Positives = 113/169 (66%), Gaps = 5/169 (2%)

Query: 156 RYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVA 215
           ++  R + LE+VA VPG V G L H  SLR       WI+ LL+EA NERMHL+TF+++ 
Sbjct: 157 KWLTRCIFLESVAGVPGSVAGFLRHLHSLRMLRRDKAWIETLLDEAYNERMHLLTFIKIG 216

Query: 216 KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELD-KGNI 274
           KP W+ R++++  QGVF N +FL YL++P++ HR VGYLEEEA+ +Y+  L EL   G +
Sbjct: 217 KPSWFTRSIIYVGQGVFTNVFFLLYLLNPRYCHRFVGYLEEEAVRTYSHLLDELAVPGKL 276

Query: 275 ---ENVPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
              E +  P +A  YW  L P S+ KD++L +RADEA HR+VNH  +++
Sbjct: 277 PAFETMKIPEVAVQYWPELTPKSSFKDLILRIRADEAKHREVNHTFANL 325


>gi|255728097|ref|XP_002548974.1| alternative oxidase 1, mitochondrial precursor [Candida tropicalis
           MYA-3404]
 gi|240133290|gb|EER32846.1| alternative oxidase 1, mitochondrial precursor [Candida tropicalis
           MYA-3404]
          Length = 361

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 88/250 (35%), Positives = 138/250 (55%), Gaps = 27/250 (10%)

Query: 97  VNKDDGSEWKWNCFRPWEAYEADLSIDLK-KHHAPTTFSDKMALWTVKSLRWPTDLFF-- 153
           VN++D S +      P   +  +   ++   H  P TF DK++   +  +R   D F   
Sbjct: 72  VNRNDDSRYLTKPTYPHPVFPTEECENVTVTHREPRTFGDKLSYKGIHYVRKIFDFFTGY 131

Query: 154 -------------------QRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWI 194
                              + ++  R + LE+VA VPG V G + H  SLR  +    WI
Sbjct: 132 ADPSPSNPNQYVGTRYEMTEGKWMTRCIFLESVAGVPGSVAGFIRHLHSLRMLKRDKAWI 191

Query: 195 KALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYL 254
           + L +EA NERMHL+TF+++ KP W+ R++++  QGVF N +F  YL++P++ HR VGYL
Sbjct: 192 ETLHDEAYNERMHLLTFIKIGKPSWFTRSIIYVGQGVFTNVFFFLYLLNPRYCHRFVGYL 251

Query: 255 EEEAIHSYTEFLKELDK----GNIENVPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHH 309
           EEEA+ +YT  L+EL +     N + +  P +A  YW  L   S+ +D++L +RADEA H
Sbjct: 252 EEEAVRTYTHLLEELKEPGKLPNFQKMKIPTVAAQYWPELTNESSFRDLILRIRADEAKH 311

Query: 310 RDVNHYASDI 319
           R+VNH  +++
Sbjct: 312 REVNHTFANL 321


>gi|301106719|ref|XP_002902442.1| alternative oxidase, putative [Phytophthora infestans T30-4]
 gi|262098316|gb|EEY56368.1| alternative oxidase, putative [Phytophthora infestans T30-4]
          Length = 258

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/212 (41%), Positives = 127/212 (59%), Gaps = 14/212 (6%)

Query: 96  KVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTT-FSDKMALWTVKSLRWPTDLFFQ 154
           ++   +  E  W        Y+ D    +++ H P T   +++A   V++LR   D+   
Sbjct: 42  RITTSENGEPIWENPINHAVYDLDKITTMQQTHHPITKMHERVAYLAVQTLRTGFDIVSG 101

Query: 155 RR----------YGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 204
            R          +  R + LE+VA VPGMVGGML H +SLR+F+   GWI  LLEEAENE
Sbjct: 102 YRGPGGAMTDKDWVNRCLFLESVAGVPGMVGGMLRHLRSLRKFKRDYGWIHTLLEEAENE 161

Query: 205 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 264
           RMHL+ FM + +P ++ R LV   QGVFFNA+FL YL+SPK  HR VGYLEEEA+ +YT 
Sbjct: 162 RMHLLIFMNIKQPGYFFRTLVLGAQGVFFNAFFLTYLVSPKTCHRFVGYLEEEAVKTYTC 221

Query: 265 FLKELDKGNIE---NVPAPAIATDYWRLPPNS 293
            LK+++ G+++      AP IA  Y++LP ++
Sbjct: 222 LLKDIEDGHLDAWKEKKAPLIAQTYYKLPEDA 253


>gi|68464763|ref|XP_723459.1| hypothetical protein CaO19.4773 [Candida albicans SC5314]
 gi|46445493|gb|EAL04761.1| hypothetical protein CaO19.4773 [Candida albicans SC5314]
          Length = 241

 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 78/169 (46%), Positives = 111/169 (65%), Gaps = 5/169 (2%)

Query: 156 RYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVA 215
           ++  R + LE+VA VPG V G L H  SLR       WI+ LL+EA NERMHL+TF+++ 
Sbjct: 33  KWLTRCIFLESVAGVPGSVAGFLRHLHSLRMLRRDKAWIETLLDEAYNERMHLLTFIKIG 92

Query: 216 KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN-- 273
           KP W+ R++++  QGVF N +FL YL++P++ HR VGYLEEEA+ +Y+  L EL      
Sbjct: 93  KPSWFTRSIIYVGQGVFTNVFFLLYLLNPRYCHRFVGYLEEEAVRTYSHLLDELAVPGKL 152

Query: 274 --IENVPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
              E +  P +A  YW  L P S+ KD++L +RADEA HR+VNH  +++
Sbjct: 153 PAFETMKIPEVAVQYWPELTPKSSFKDLILRIRADEAKHREVNHTFANL 201


>gi|118384863|ref|XP_001025570.1| Alternative oxidase family protein [Tetrahymena thermophila]
 gi|89307337|gb|EAS05325.1| Alternative oxidase family protein [Tetrahymena thermophila SB210]
          Length = 301

 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 94/230 (40%), Positives = 130/230 (56%), Gaps = 24/230 (10%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL----------------FFQRRYGCRAMMLETVAAV 170
           H  P  F D+ A + ++SLR+  D+                  +R +  R + LETVA V
Sbjct: 75  HLEPANFGDRFANFFIQSLRYGFDIMSGYKKVFPWQEKGAPLTEREWINRILFLETVAGV 134

Query: 171 PGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQG 230
           PG V  M  H +SLR  +   GWI  LLEEAENERMHL+TF+EV KP +  R  V   Q 
Sbjct: 135 PGFVAAMHRHLRSLRSMKRDYGWIHTLLEEAENERMHLLTFLEVQKPTFLFRTGVILAQY 194

Query: 231 VFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE-LDKGNIENV----PAPAIATD 285
            +   + + Y   P+  HR+VGYLEEEA+ +YT  ++  L +G+  ++    PAP I+ D
Sbjct: 195 GYVALFSVLYFFYPRVCHRIVGYLEEEAVKTYTHSIETALKEGSEIHIWLTKPAPKISID 254

Query: 286 YWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGY 335
           YW+L PN+ L DV+  VR DE HHRDVNH  +D + Q    + +P P G+
Sbjct: 255 YWKLSPNACLLDVIYAVRKDEEHHRDVNHKLADDYSQK---KPNPFPPGH 301


>gi|344302079|gb|EGW32384.1| inducible alternative oxidase 2 [Spathaspora passalidarum NRRL
           Y-27907]
          Length = 342

 Score =  167 bits (423), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 77/166 (46%), Positives = 111/166 (66%), Gaps = 5/166 (3%)

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
           R + LE++A VPG V   + H  SLR  +    WI+ LL+EA NERMHL+TF+++ KP W
Sbjct: 138 RVIFLESIAGVPGFVASFIRHLHSLRLLKRDKAWIETLLDEAYNERMHLLTFIKLGKPSW 197

Query: 220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDK----GNIE 275
           + R++++A QGVF N +FL YL +P+F HR VGYLEEEA+ +YT  + EL+         
Sbjct: 198 FTRSIIYAGQGVFANIFFLCYLANPRFCHRFVGYLEEEAVSTYTHLVHELETPGKLTGFN 257

Query: 276 NVPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDIH 320
           ++  P IA  YW  L  NS+ KD++L +RADEA HR+VNH  ++++
Sbjct: 258 DMKIPEIAVQYWPELTENSSFKDLILRIRADEAKHREVNHTLANLN 303


>gi|296418840|ref|XP_002839033.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295635027|emb|CAZ83224.1| unnamed protein product [Tuber melanosporum]
          Length = 383

 Score =  167 bits (423), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 74/168 (44%), Positives = 115/168 (68%), Gaps = 3/168 (1%)

Query: 155 RRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEV 214
           +++  R + LE++A VPGM  GM+ H  SLRR +    WI+ LLEEA NER+HL+TF+  
Sbjct: 140 QKWLARFIFLESIAGVPGMAAGMIRHLNSLRRLKRDNAWIETLLEEAYNERLHLLTFLHY 199

Query: 215 AKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI 274
            +P  + R ++   QG+FFN +F+ YL+SP+  HR VGY+EEEA+ +YT  + +++ G I
Sbjct: 200 RQPGLFMRTMILGAQGIFFNLFFISYLVSPRTCHRFVGYIEEEAVITYTRAIADIENGRI 259

Query: 275 ---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
              EN+ AP IA  Y+ L P++ + +++ V+RADEA HR+VNH  +++
Sbjct: 260 PEWENLLAPDIAIKYFGLGPDANMLELLKVIRADEAKHREVNHTLANL 307


>gi|448091410|ref|XP_004197324.1| Piso0_004571 [Millerozyma farinosa CBS 7064]
 gi|448095975|ref|XP_004198355.1| Piso0_004571 [Millerozyma farinosa CBS 7064]
 gi|359378746|emb|CCE85005.1| Piso0_004571 [Millerozyma farinosa CBS 7064]
 gi|359379777|emb|CCE83974.1| Piso0_004571 [Millerozyma farinosa CBS 7064]
          Length = 341

 Score =  167 bits (423), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 85/220 (38%), Positives = 125/220 (56%), Gaps = 27/220 (12%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL-----------------------FFQRRYGCRAMM 163
           H  P TF DK+    + ++R   D                          + ++  R + 
Sbjct: 82  HREPVTFGDKVTYNMILAIRRTFDFVTGYKKPQTPEEKEHAFKGTRYEMTESKWMTRVIF 141

Query: 164 LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERA 223
           LE+VA VPGMV   + H  SLR       WI+ LL+EA NERMHL+TFM++ KP W+ + 
Sbjct: 142 LESVAGVPGMVAAFIRHLHSLRLLRRDKAWIETLLDEAYNERMHLLTFMKLGKPSWFTKL 201

Query: 224 LVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPAP 280
           +++A QGVF N +F  YL++P++ HR VGYLEEEA+ +YT  L EL+ G +   +++  P
Sbjct: 202 IIYAGQGVFCNMFFFSYLLNPRYCHRFVGYLEEEAVSTYTHLLDELEAGKLPKFDHIELP 261

Query: 281 AIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
            I+  YW  L   S+  D+V +VRADEA HR+VNH  +++
Sbjct: 262 EISWHYWGDLNEKSSFYDLVSLVRADEAKHREVNHTLANL 301


>gi|118384865|ref|XP_001025571.1| Alternative oxidase family protein [Tetrahymena thermophila]
 gi|89307338|gb|EAS05326.1| Alternative oxidase family protein [Tetrahymena thermophila SB210]
          Length = 322

 Score =  167 bits (422), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 91/214 (42%), Positives = 125/214 (58%), Gaps = 22/214 (10%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLF--------FQRRYG--------CRAMMLETVAAV 170
           H  P    D+++ + ++S+R   D+         +Q++ G         R + LETVA V
Sbjct: 92  HFKPKNIGDRLSHYLIQSMRLGFDVMSGYKKVFPWQQKSGELTERGWLNRMVFLETVAGV 151

Query: 171 PGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQG 230
           PG V  M  H +SLRR E   GWI  LLEEAENERMHL+TF++V KP    R  V + Q 
Sbjct: 152 PGFVAAMHRHLRSLRRMERDYGWIHVLLEEAENERMHLLTFLKVQKPTLLFRLGVISAQF 211

Query: 231 VFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI-----ENVPAPAIATD 285
            +   + L Y   P+  HR+VGYLEEEA+ +YT  ++ +++ N      +   AP IA D
Sbjct: 212 NYVLMFGLLYQFFPRVCHRIVGYLEEEAVKTYTHCIEVINQENSSISHWKTKKAPQIAID 271

Query: 286 YWRLPPNSTLKDVVLVVRADEAHHRDVNH-YASD 318
           YWRLP N+T++DV+  +R DE HHRDVNH  ASD
Sbjct: 272 YWRLPENATMEDVIYAIRKDEEHHRDVNHDLASD 305


>gi|62241309|dbj|BAD93712.1| alternative oxidase 1a [Candida maltosa]
          Length = 371

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 111/169 (65%), Gaps = 5/169 (2%)

Query: 156 RYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVA 215
           ++  R + LE VA +PG V G++ H  SLR       WI+ L +EA NERMHL+TF+++ 
Sbjct: 163 KWMTRCIFLEAVAGIPGSVAGLIRHLHSLRMLTRDKAWIQTLNDEAYNERMHLLTFIKIG 222

Query: 216 KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDK---- 271
           KP W+ R +++  QGVF N +F+ YL++PK+ HR VGYLEEEA+ +YT  L EL+     
Sbjct: 223 KPSWFTRTIIYVGQGVFTNLFFMVYLMNPKYCHRFVGYLEEEAVRTYTHLLAELNVPGKL 282

Query: 272 GNIENVPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
            + E +  P IA  YW  L P S+ KD++L +RADE+ HR++NH  +++
Sbjct: 283 PDFEKMVIPTIAVQYWDELSPESSFKDLILRIRADESKHREINHTFANL 331


>gi|33087085|gb|AAP92756.1| alternative oxidase 1c [Solanum lycopersicum]
          Length = 87

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/87 (86%), Positives = 81/87 (93%)

Query: 164 LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERA 223
           LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEV+KPKWYER 
Sbjct: 1   LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVSKPKWYERG 60

Query: 224 LVFAVQGVFFNAYFLGYLISPKFAHRM 250
           LV  VQG+FFN YF+ Y++SPK AHR+
Sbjct: 61  LVLMVQGIFFNVYFMTYILSPKLAHRI 87


>gi|50551827|ref|XP_503388.1| YALI0E00814p [Yarrowia lipolytica]
 gi|51701283|sp|Q8J0I8.1|AOX_YARLI RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|27263058|emb|CAD21442.1| alternative oxidase [Yarrowia lipolytica]
 gi|49649257|emb|CAG78967.1| YALI0E00814p [Yarrowia lipolytica CLIB122]
          Length = 353

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 107/316 (33%), Positives = 157/316 (49%), Gaps = 35/316 (11%)

Query: 32  NRHLSTFLVRAPILGSRNRSTLALGGEKEQQREENVQTTGAAAAGGSGN------KDEKR 85
           NR  +    RAP L  R RST     E E      + T   +A G +          +  
Sbjct: 8   NRGQTYVNARAPNLLGRFRST---DDEDENNPSTELATDTTSAYGSTAASVVTMANSKPD 64

Query: 86  IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 145
            VS +   +       GS W      P    E   ++++  H    TFSD++AL  +  +
Sbjct: 65  DVSLYATSSHHHEYFTGSAW----IHPVYTKEQMDALEVN-HRKTETFSDRVALRAILLM 119

Query: 146 RWPTDL------------------FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRF 187
           R   DL                     R++  R + LE++A VPGMV GM+ H  SLR  
Sbjct: 120 RIIFDLCTGYKHPKEGEAHLPKFRMTTRQWLDRFLFLESIAGVPGMVAGMIRHLHSLRAL 179

Query: 188 EHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFA 247
                WI++L+EEA NERMHL+TF+++ KP    R  +   Q +F+N +F+ YLISP   
Sbjct: 180 RRDRAWIESLVEEAYNERMHLLTFLKLQKPSVQMRTGLLIGQIIFYNLFFISYLISPATC 239

Query: 248 HRMVGYLEEEAIHSYTEFLKELDKGNIENVPA---PAIATDYWRLPPNSTLKDVVLVVRA 304
           HR VGYLEEEA+ +YT  L+++D G +  + +   P IA  YW +  + T++D++  VRA
Sbjct: 240 HRFVGYLEEEAVITYTRCLEDIDAGRLPELASMEVPDIARTYWHMEDDCTMRDLIQYVRA 299

Query: 305 DEAHHRDVNHYASDIH 320
           DEA H +VNH   ++H
Sbjct: 300 DEAKHCEVNHTFGNLH 315


>gi|224012252|ref|XP_002294779.1| mitochondrial alternative oxidase [Thalassiosira pseudonana
           CCMP1335]
 gi|220969799|gb|EED88139.1| mitochondrial alternative oxidase [Thalassiosira pseudonana
           CCMP1335]
          Length = 227

 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 93/218 (42%), Positives = 122/218 (55%), Gaps = 16/218 (7%)

Query: 117 EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC--------RAMMLETVA 168
           E +L + L  H  P  F DK A   VK+ R+  D+      G         RA+ LETVA
Sbjct: 11  EEELDVKLT-HVPPEKFVDKAAFVAVKAFRFGFDIGTGWNRGAITTDKILNRAIFLETVA 69

Query: 169 AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
           A+PGMV  ++ H +SLR     GG +   LEEA NERMHL+TF+ +  P +  RA V   
Sbjct: 70  AIPGMVAAIIRHFRSLRNMARDGGMLNMFLEEANNERMHLLTFIRMKDPGYLFRATVIGG 129

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKEL-------DKGNIENVPAPA 281
           Q  F +A+   Y+ISP F HR VGY+EEEA  +YT+ +K +       D GN     AP 
Sbjct: 130 QFAFGSAFLTMYMISPAFCHRFVGYIEEEACATYTKIIKAIEEAPEGTDLGNWRTEEAPK 189

Query: 282 IATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
           IA  YW L  + ++ D++L VRADEA HRDVNH  S +
Sbjct: 190 IAKGYWHLGEHGSVLDLMLAVRADEAEHRDVNHAVSGV 227


>gi|343429594|emb|CBQ73167.1| related to alternative oxidase precursor, mitochondrial
           [Sporisorium reilianum SRZ2]
          Length = 409

 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 105/244 (43%), Positives = 137/244 (56%), Gaps = 22/244 (9%)

Query: 96  KVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQR 155
           K+ KDD SE                 +  + H A T  SD  A+ T+K +R     F   
Sbjct: 147 KLAKDDASE---------------AHVASEAHVAKTVSSDDGAM-TLKEMRAKGLCFGPD 190

Query: 156 RYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVA 215
            +  R + LET+A VPGMV     H +SLR  +   GWI  +LE+AENERMHL+TFM VA
Sbjct: 191 GWLNRIIFLETIAGVPGMVAASCRHLQSLRLMKRDKGWIHTMLEDAENERMHLLTFMAVA 250

Query: 216 KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI- 274
           KP W  R      QGVF+N +F+ YL +PK AHR VG LEEEA+ +Y+  L++L +G + 
Sbjct: 251 KPGWIARTFALLAQGVFYNFFFVFYLTAPKVAHRFVGVLEEEAVLTYSYILEDLKEGRLP 310

Query: 275 --ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ---LRES 329
             ENVPAP IA  YW+L   + L DV+  VRADEA HR +NH  + +         LRE 
Sbjct: 311 EWENVPAPEIAKQYWQLGDQAMLVDVIRAVRADEATHRHINHTFASLESTDPNPFALREP 370

Query: 330 PAPL 333
           PA +
Sbjct: 371 PAKM 374


>gi|219114258|ref|XP_002176300.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217402703|gb|EEC42692.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 218

 Score =  164 bits (415), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 90/213 (42%), Positives = 125/213 (58%), Gaps = 16/213 (7%)

Query: 117 EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC--------RAMMLETVA 168
           +ADL I+L  H  P    D++A   VK++RW  D      Y          R + LET+A
Sbjct: 7   QADLDIELT-HTKPEGIRDRLAYNAVKAVRWSFDKMTGWNYKSITQDMVLQRVIYLETIA 65

Query: 169 AVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
           AVPGMV  ++ H +SLR F+  GG ++  L+EA NERMHL++F+ +  P    RA V   
Sbjct: 66  AVPGMVAAIVRHFRSLRSFQRDGGMMQMFLDEANNERMHLLSFVRMKDPSMLFRAAVIGG 125

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIEN-------VPAPA 281
           Q  F +A+ L Y+ISPKF HR VGY+EEEA  +YT+ +K ++    +N         AP+
Sbjct: 126 QAGFGSAFLLLYVISPKFCHRFVGYVEEEACTTYTKIIKAIEDAPEDNELAAWRTQLAPS 185

Query: 282 IATDYWRLPPNSTLKDVVLVVRADEAHHRDVNH 314
           IA  YW+L    T+ +++  VRADEA HRDVNH
Sbjct: 186 IARSYWKLGEYGTVLELMYAVRADEAEHRDVNH 218


>gi|241949569|ref|XP_002417507.1| alternative oxidase 2, mitochondrial precursor, putative [Candida
           dubliniensis CD36]
 gi|223640845|emb|CAX45160.1| alternative oxidase 2, mitochondrial precursor, putative [Candida
           dubliniensis CD36]
          Length = 366

 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 76/169 (44%), Positives = 110/169 (65%), Gaps = 5/169 (2%)

Query: 156 RYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVA 215
           ++  R + LE+VA VPG V G L H  SLR       WI+ LL+EA NERMHL+TF+++ 
Sbjct: 158 KWLTRCIFLESVAGVPGSVAGFLRHLHSLRMLRRDKAWIETLLDEAYNERMHLLTFIKIG 217

Query: 216 KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKEL----DK 271
           KP W  R++++  QGVF N +FL YL++P++ HR VGYLEEEA+ +Y+  L E+      
Sbjct: 218 KPSWLTRSIIYIGQGVFTNVFFLLYLLNPRYCHRFVGYLEEEAVRTYSHLLDEMAIPGKL 277

Query: 272 GNIENVPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
            + E +  P +A  YW  L   S+ KD++L +RADEA HR+VNH  +++
Sbjct: 278 PSFETMKIPEVAIQYWPELTSKSSFKDLILRIRADEAKHREVNHTFANL 326


>gi|145536776|ref|XP_001454110.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124421854|emb|CAK86713.1| unnamed protein product [Paramecium tetraurelia]
          Length = 271

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 90/228 (39%), Positives = 131/228 (57%), Gaps = 22/228 (9%)

Query: 127 HHAPTTFSDKMALWTVKSLR--------------WPTDLFFQRRYGCRAMMLETVAAVPG 172
           H  P TF D+ A   ++S+R              W  ++  ++++  R + LETVA VPG
Sbjct: 47  HKLPLTFGDRFAHLFIQSMRVGFDVLSGYRKVFPWQDNIISEKKWINRVLFLETVAGVPG 106

Query: 173 MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVF 232
            V GM  H +SLR  +   GWI  LLEEAENER+HL+TF+ + KP    R  V   Q  +
Sbjct: 107 FVAGMHRHLRSLRGMKRDLGWIHTLLEEAENERVHLLTFLTIKKPSLIFRTGVILAQLWY 166

Query: 233 FNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELD-KGNI----ENVPAPAIATDYW 287
              Y + Y+I P+  HR+VGYLEEEA+ +YT  ++E++ +G+     +  PA   + +YW
Sbjct: 167 VALYSVAYMIQPRVCHRIVGYLEEEAVKTYTHMIEEIEIEGSSIHSWKTRPAHQNSIEYW 226

Query: 288 RLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGY 335
           +L  N+TL DVV  +R DE HH++VNH  +D + Q     E+P P GY
Sbjct: 227 KLSENATLLDVVKAIRKDEEHHKEVNHKFADDYTQQ---SENPFPPGY 271


>gi|354548354|emb|CCE45090.1| hypothetical protein CPAR2_700940 [Candida parapsilosis]
          Length = 370

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 83/220 (37%), Positives = 121/220 (55%), Gaps = 27/220 (12%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL----------------------FFQRRYGCRAMML 164
           H  P TF DK+A   +K  R   D                         + ++  R + L
Sbjct: 111 HREPRTFGDKIAYHGIKFCRGCFDFVTGYKVPKEGESLDKYKGTRYEMTEGKWLTRVIFL 170

Query: 165 ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERAL 224
           E+VA VPG V   L    SLR       WI+ L +EA NERMHL+TFM++ +P W+ + +
Sbjct: 171 ESVAGVPGSVASFLRTLHSLRLLRRDKAWIETLQDEAYNERMHLLTFMKIGQPSWFTKTI 230

Query: 225 VFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN----IENVPAP 280
           ++  QGVF N +F  YL +PK+ HR VGYLEEEA+ +YT  L E++  N     + +  P
Sbjct: 231 IYLGQGVFTNLFFFCYLANPKYCHRFVGYLEEEAVRTYTHLLDEMEDPNKLNGFQKIQIP 290

Query: 281 AIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
            IA +YW  L  +S+ KD++L +RADE+ HR+VNH  +++
Sbjct: 291 TIAVNYWSSLSKDSSFKDLILRIRADESKHREVNHTLANL 330


>gi|260948572|ref|XP_002618583.1| hypothetical protein CLUG_02042 [Clavispora lusitaniae ATCC 42720]
 gi|238848455|gb|EEQ37919.1| hypothetical protein CLUG_02042 [Clavispora lusitaniae ATCC 42720]
          Length = 332

 Score =  161 bits (408), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 110/170 (64%), Gaps = 4/170 (2%)

Query: 154 QRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFME 213
           + ++  R + LE+VA VPGM    L H  SLR  +    WI+ LL+EA NERMHL+TFM+
Sbjct: 123 ESKWLTRVIFLESVAGVPGMTAAFLRHLHSLRLMKRDKAWIETLLDEAYNERMHLLTFMK 182

Query: 214 VAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN 273
           + +P W+ +  VFA QGVF N +FL YL+SP+  HR VGYLEEEA+ +YT  ++EL+   
Sbjct: 183 IGRPSWFTKVFVFAGQGVFCNLFFLMYLLSPRACHRFVGYLEEEAVSTYTHLIEELEAKR 242

Query: 274 I---ENVPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
           +   + +  P +A  YW  L   ST  D++  +RADE+ HR+VNH  +++
Sbjct: 243 LPKFDGITVPEVAQLYWPELNEKSTFLDLIQRIRADESKHREVNHTLANL 292


>gi|33327042|gb|AAQ08895.1| SHAM-sensitive alternative terminal oxidase isozyme I [Yarrowia
           lipolytica]
          Length = 341

 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 84/210 (40%), Positives = 123/210 (58%), Gaps = 21/210 (10%)

Query: 132 TFSDKMALWTVKSLRWPTDL------------------FFQRRYGCRAMMLETVAAVPGM 173
           TFSD++AL  +  +R   DL                     R++  R + LE++A VPGM
Sbjct: 94  TFSDRVALRAILLMRIIFDLCTGYKHPKEGEAHLPKFRMTTRQWLDRFLFLESIAGVPGM 153

Query: 174 VGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFF 233
           V GM+ H  SLR       WI++L+EEA NERMHL+TF+++ KP    R  +   Q +F+
Sbjct: 154 VAGMIRHLHSLRALRRDRAWIESLVEEAYNERMHLLTFLKLQKPSVQMRTGLLIGQIIFY 213

Query: 234 NAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPA---PAIATDYWRLP 290
           N +F+ YLISP   HR VGYLEEEA+ +YT  L+++D G +  + +   P IA  YW + 
Sbjct: 214 NLFFISYLISPATCHRFVGYLEEEAVITYTRCLEDIDAGRLPELASMEVPDIARTYWHME 273

Query: 291 PNSTLKDVVLVVRADEAHHRDVNHYASDIH 320
            + T++D++  VRADEA H +VNH   ++H
Sbjct: 274 DDCTMRDLIQYVRADEAKHCEVNHTFGNLH 303


>gi|3023301|sp|Q00912.1|AOX_HANAN RecName: Full=Alternative oxidase, mitochondrial; Flags: Precursor
 gi|218523|dbj|BAA00641.1| unnamed protein product [Pichia anomala]
 gi|6978940|dbj|BAA90763.1| alternative oxidase [Pichia anomala]
 gi|445371|prf||1909185A alternative oxidase
          Length = 342

 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 112/170 (65%), Gaps = 4/170 (2%)

Query: 154 QRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFME 213
           + ++  R + LE+VA VPGMV   + H  SLR  +    WI+ LL+EA NERMHL+TF++
Sbjct: 131 EEKWLTRCIFLESVAGVPGMVAAFIRHLHSLRLLKRDKAWIETLLDEAYNERMHLLTFIK 190

Query: 214 VAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN 273
           +  P W+ R +++  QGVF N +FL YLI P++ HR VGYLEEEA+ +YT  +K++D   
Sbjct: 191 IGNPSWFTRFIIYMGQGVFANLFFLVYLIKPRYCHRFVGYLEEEAVSTYTHLIKDIDSKR 250

Query: 274 I---ENVPAPAIATDYWR-LPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
           +   ++V  P I+  YW  L   ST +D++  +RADE+ HR+VNH  +++
Sbjct: 251 LPKFDDVNLPEISWLYWTDLNEKSTFRDLIQRIRADESKHREVNHTLANL 300


>gi|302411548|ref|XP_003003607.1| alternative oxidase [Verticillium albo-atrum VaMs.102]
 gi|261357512|gb|EEY19940.1| alternative oxidase [Verticillium albo-atrum VaMs.102]
          Length = 334

 Score =  160 bits (405), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 90/247 (36%), Positives = 128/247 (51%), Gaps = 46/247 (18%)

Query: 112 PWEAY-EADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL------------------- 151
           P E Y EAD+   +  H AP T+ D  A   V+  RW  D                    
Sbjct: 84  PHEGYSEADMLAVVPGHRAPETWGDWAAWKFVRVARWTMDRATGLKPEQQVDKKNPTTAV 143

Query: 152 -----FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERM 206
                  + ++  R + LE++A VPGMV GML H  SLRR +   GWI+ LLEE+ NERM
Sbjct: 144 VANEPLTEAQWLVRFIFLESIAGVPGMVAGMLRHLGSLRRMKRDNGWIETLLEESYNERM 203

Query: 207 HLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFL 266
           HL+TFM++++P W+ + ++   QGVFFN  FL YL+SPK  HR VGYLEEEA+H+Y+  +
Sbjct: 204 HLLTFMKMSEPGWFMKVMLIGAQGVFFNGMFLSYLVSPKITHRFVGYLEEEAVHTYSRCI 263

Query: 267 KELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQL 326
           +E+++G +     P +    W+                 +A HR VNH  S+++      
Sbjct: 264 REIEEGQLPKWSDPNLTFPTWQC----------------KAVHRGVNHTLSNLNQN---- 303

Query: 327 RESPAPL 333
            E P P 
Sbjct: 304 -EDPNPF 309


>gi|14599474|gb|AAK70935.1| alternative oxidase 1a [Mangifera indica]
          Length = 78

 Score =  160 bits (405), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 74/78 (94%), Positives = 77/78 (98%)

Query: 173 MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVF 232
           MVGGMLLHCKSLR+FEHSGGWIKALLEEAENERMHLMTFMEVA+P+WYERALVF VQGVF
Sbjct: 1   MVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFMEVAQPRWYERALVFTVQGVF 60

Query: 233 FNAYFLGYLISPKFAHRM 250
           FNAYFLGYLISPKFAHRM
Sbjct: 61  FNAYFLGYLISPKFAHRM 78


>gi|146412117|ref|XP_001482030.1| hypothetical protein PGUG_05793 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 347

 Score =  160 bits (405), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 87/227 (38%), Positives = 128/227 (56%), Gaps = 27/227 (11%)

Query: 126 KHHAPTTFSDKMALWTVKSLRWPTDL-----------------------FFQRRYGCRAM 162
           +H  P   SD +A   V   RW  D+                         + ++  R +
Sbjct: 88  EHREPRNVSDTIAFRGVNFFRWCFDMVTGYKKPRNDHDLETGFKGTRWEMTENKWLTRII 147

Query: 163 MLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYER 222
            LE++A VPGMV   L H  SLR  +    WI+ LL+EA NERMHL+TF+++ +P W+ R
Sbjct: 148 FLESIAGVPGMVAAFLRHLHSLRLLKRDRAWIETLLDEAYNERMHLLTFIKLGQPSWFTR 207

Query: 223 ALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPA 279
            +++  QGVF NA+FL YL+ PK+ HR VGY+EEEA+ +Y+  + ELD   +   +++  
Sbjct: 208 FIIYVGQGVFCNAFFLCYLMVPKYCHRFVGYIEEEAVSTYSHLVYELDTKKLPKFDHMRV 267

Query: 280 PAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 325
           P +A  YW  L  NST +D++L VRADEA HR+VNH  +++    R 
Sbjct: 268 PPVAIQYWTELDENSTFRDLILRVRADEAKHREVNHTLANLDLTDRN 314


>gi|443894326|dbj|GAC71674.1| hypothetical protein PANT_5c00016 [Pseudozyma antarctica T-34]
          Length = 468

 Score =  160 bits (405), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 88/178 (49%), Positives = 115/178 (64%), Gaps = 6/178 (3%)

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
           R + LET+A VPGMV     H +SLR  +   GWI  +LE+AENERMHL+TFME+AKP W
Sbjct: 254 RIIFLETIAGVPGMVAATCRHLQSLRLMKRDKGWIHTMLEDAENERMHLLTFMELAKPGW 313

Query: 220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---EN 276
             R      QGVF+N +F+ YL+SP+ AHR VG LEEEA+ +Y+  L +L++G +   EN
Sbjct: 314 IARTFALLAQGVFYNFFFVFYLVSPRVAHRFVGVLEEEAVMTYSFILDDLNEGRLPEWEN 373

Query: 277 VPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ---LRESPA 331
           V AP IA  YW+L  ++ L DV+  VRADEA HR +NH  + +         LRE PA
Sbjct: 374 VRAPEIARQYWQLSDDAMLVDVIRAVRADEATHRHINHTFASLESTDPNPFALREPPA 431


>gi|448535195|ref|XP_003870925.1| Aox1 alternative oxidase [Candida orthopsilosis Co 90-125]
 gi|380355281|emb|CCG24798.1| Aox1 alternative oxidase [Candida orthopsilosis]
          Length = 370

 Score =  160 bits (405), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 74/169 (43%), Positives = 108/169 (63%), Gaps = 5/169 (2%)

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
           R + LE++A VPG V   L    SLR  +    WI+ L +EA NERMHL+TF+++ +P W
Sbjct: 166 RVIFLESIAGVPGSVASFLRTLHSLRLLKRDKAWIETLQDEAYNERMHLLTFIKIGQPSW 225

Query: 220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN----IE 275
           + + +++  QGVF N +F  YL +PK+ HR VGYLEEEA+ +YT  L EL+  N     +
Sbjct: 226 FTKTIIYLGQGVFTNLFFFCYLANPKYCHRFVGYLEEEAVRTYTHLLDELEDPNKLKDFQ 285

Query: 276 NVPAPAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQG 323
           N+  P IA +YW  L   S+ KD++L +RADE+ HR+VNH  +++   G
Sbjct: 286 NMLIPTIAVNYWPSLTEESSFKDLILRIRADESKHREVNHTLANLKQDG 334


>gi|354548355|emb|CCE45091.1| hypothetical protein CPAR2_700950 [Candida parapsilosis]
          Length = 370

 Score =  160 bits (405), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 84/220 (38%), Positives = 121/220 (55%), Gaps = 27/220 (12%)

Query: 127 HHAPTTFSDKMAL---------------WTVKSLRWPTDLFFQRRYG-------CRAMML 164
           H  P T  DK+A                + V     P D +   RY         R + L
Sbjct: 111 HRKPETIGDKIAYHGTMFCRACFDFVTGYKVPKEGEPLDKYVGTRYEMTEGKWMTRVIFL 170

Query: 165 ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERAL 224
           E++A VPG V   L    SLR  +    WI+ L +EA NERMHL+TF+++ +P W+ + +
Sbjct: 171 ESIAGVPGSVASFLRTLHSLRLLKRDKAWIETLQDEAYNERMHLLTFIKIGQPSWFTKTI 230

Query: 225 VFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN----IENVPAP 280
           ++  QGVF N +F  YL +PK+ HR VGYLEEEA+ +YT  L ELD  N     +++  P
Sbjct: 231 IYLGQGVFTNLFFFCYLTNPKYCHRFVGYLEEEAVRTYTHLLDELDDPNKLKDFQSMLIP 290

Query: 281 AIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
            IA +YW  L   S+ KD++L +RADE+ HR+VNH  +++
Sbjct: 291 TIAVNYWPSLSEESSFKDLILRIRADESKHREVNHTLANL 330


>gi|190349103|gb|EDK41695.2| hypothetical protein PGUG_05793 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 347

 Score =  160 bits (404), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 87/227 (38%), Positives = 128/227 (56%), Gaps = 27/227 (11%)

Query: 126 KHHAPTTFSDKMALWTVKSLRWPTDL-----------------------FFQRRYGCRAM 162
           +H  P   SD +A   V   RW  D+                         + ++  R +
Sbjct: 88  EHREPRNVSDTIAFRGVNFFRWCFDMVTGYKKPRNDHDLETGFKGTRWEMTENKWLTRII 147

Query: 163 MLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYER 222
            LE++A VPGMV   L H  SLR  +    WI+ LL+EA NERMHL+TF+++ +P W+ R
Sbjct: 148 FLESIAGVPGMVAAFLRHLHSLRLLKRDRAWIETLLDEAYNERMHLLTFIKLGQPSWFTR 207

Query: 223 ALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVPA 279
            +++  QGVF NA+FL YL+ PK+ HR VGY+EEEA+ +Y+  + ELD   +   +++  
Sbjct: 208 FIIYVGQGVFCNAFFLCYLMVPKYCHRFVGYIEEEAVSTYSHLVYELDTKKLPKFDHMRV 267

Query: 280 PAIATDYW-RLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 325
           P +A  YW  L  NST +D++L VRADEA HR+VNH  +++    R 
Sbjct: 268 PPVAIQYWTELDENSTFRDLILRVRADEAKHREVNHTLANLDSTDRN 314


>gi|260794312|ref|XP_002592153.1| hypothetical protein BRAFLDRAFT_124076 [Branchiostoma floridae]
 gi|229277368|gb|EEN48164.1| hypothetical protein BRAFLDRAFT_124076 [Branchiostoma floridae]
          Length = 403

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/268 (36%), Positives = 132/268 (49%), Gaps = 49/268 (18%)

Query: 99  KDDGSEWKWNCFRP-WEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRY 157
           KDDG+  +++   P W   E +  +    H  P +F+DK+A  +VK +RW  DLF   +Y
Sbjct: 126 KDDGTMGQYSLPHPIWTEEEVNKVV--ITHTPPQSFTDKLAYGSVKFMRWNFDLFSGFKY 183

Query: 158 GCRA--------MMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 209
           G R         + LETVA VPGMV  M  H  SLRR +   GWI  LLEEAENERMHLM
Sbjct: 184 GKRTERKWLQRIIFLETVAGVPGMVAAMTRHLHSLRRLKRDYGWIHTLLEEAENERMHLM 243

Query: 210 TFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHR-------------------- 249
           T +++  P    R  V   QG F   +   YL+SP+F HR                    
Sbjct: 244 TALQLRNPSALFRWCVVFAQGTFVTLFSAAYLVSPRFCHRFAGPGSIPGVGTCARQFTTQ 303

Query: 250 -------------MVGYLEEEAIHSYTEF--LKELDKGNI---ENVPAPAIATDYWRLPP 291
                        MV  L     H    F  + + D G +    ++ AP +A  YW LP 
Sbjct: 304 RHHHYAKRTGPFGMVRCLNPTVTHLLGIFRGMGDFDSGRLPLWSDMEAPPLAKRYWSLPH 363

Query: 292 NSTLKDVVLVVRADEAHHRDVNHYASDI 319
           ++ ++DV+L +RADEAHHR VNH  SD+
Sbjct: 364 DAMMRDVILAIRADEAHHRLVNHTLSDL 391


>gi|71016790|ref|XP_758921.1| hypothetical protein UM02774.1 [Ustilago maydis 521]
 gi|46098452|gb|EAK83685.1| hypothetical protein UM02774.1 [Ustilago maydis 521]
          Length = 448

 Score =  159 bits (403), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 81/181 (44%), Positives = 113/181 (62%), Gaps = 7/181 (3%)

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVA-KPK 218
           R + LE++A VPGMV     H +SLR      GWI  +LE+AENERMHL+  + ++ KP 
Sbjct: 233 RMIFLESIAGVPGMVAATCRHLQSLRLMRRDKGWIHTMLEDAENERMHLLVALHLSGKPG 292

Query: 219 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---E 275
              R  V   QGVF+N +F+ YL+SP+ AHR VG LEEEA+ +Y+  L++L +G +   E
Sbjct: 293 LIARTFVLLAQGVFYNFFFIFYLLSPRVAHRFVGVLEEEAVLTYSLILEDLKEGRLPEWE 352

Query: 276 NVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ---LRESPAP 332
           +VPAP IA  YW+L   + L DV+  +RADEA HR +NH  + ++        LRE PA 
Sbjct: 353 DVPAPEIAKQYWQLGDEAMLVDVIRAIRADEATHRHINHTFASLNSDDPNPFALREPPAK 412

Query: 333 L 333
           +
Sbjct: 413 M 413


>gi|403355071|gb|EJY77103.1| hypothetical protein OXYTRI_01266 [Oxytricha trifallax]
          Length = 275

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/204 (41%), Positives = 120/204 (58%), Gaps = 11/204 (5%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLF----FQRRYGC----RAMMLETVAAVPGMVGGML 178
           H  P  F+DK AL TV  +    +       Q+R       R + LE +  VPG+V G  
Sbjct: 41  HREPQNFTDKFALRTVGLMEVIMNALTGKDHQKRTTTQWYNRFIFLEALGIVPGLVAGTA 100

Query: 179 LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 238
            H +SL   +     I  LLEEAENER HL  FM + KP    +  + A Q + +N +F+
Sbjct: 101 KHLRSLSSMKPDRAMIHLLLEEAENERTHLFLFMNLRKPGMLIKFGIAAKQFLLWNIFFI 160

Query: 239 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN---IENVPAPAIATDYWRLPPNSTL 295
            YLISP + HR VGY+EEE+I +YT FLK++D GN   ++N+ AP +A DY+ LP ++  
Sbjct: 161 SYLISPYYVHRFVGYMEEESIFNYTMFLKQIDSGNLKELQNMEAPQLAKDYYNLPADAKF 220

Query: 296 KDVVLVVRADEAHHRDVNHYASDI 319
           +D+VL +RADE+ HR+ NHY  ++
Sbjct: 221 RDMVLSIRADESLHREFNHYFCEL 244


>gi|256674265|gb|ACV04930.1| mitochondrial alternative oxidase [Blastocystis sp. Nand II]
          Length = 304

 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 80/194 (41%), Positives = 118/194 (60%), Gaps = 3/194 (1%)

Query: 125 KKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSL 184
           K+H  P   SD++A   V +L    + +F+  Y  RA+ LE+VA++PG+V   L H + L
Sbjct: 73  KRH--PKGVSDRVASGIVNALFKIGNAYFRENYILRAVFLESVASIPGLVCSNLHHLRCL 130

Query: 185 RRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISP 244
           RR +    WIK L++EAENERMHL+      K    ++  +   Q  F   +   ++ +P
Sbjct: 131 RRLQ-PDSWIKPLVDEAENERMHLLAVRTYTKLTAVQKLFIRITQFSFVTLFSFLFVFAP 189

Query: 245 KFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRA 304
           + +HR+VG+LEE A+ SYTE ++ +D   +EN PA  I  DYW LP ++TL+D +LV+RA
Sbjct: 190 RTSHRLVGFLEEHAVDSYTEMIRRIDSNTLENRPATQITKDYWGLPEDATLRDALLVIRA 249

Query: 305 DEAHHRDVNHYASD 318
           DEA HR VNH   D
Sbjct: 250 DEADHRLVNHSLGD 263


>gi|224012000|ref|XP_002294653.1| mitochondrial alternative oxidase [Thalassiosira pseudonana
           CCMP1335]
 gi|220969673|gb|EED88013.1| mitochondrial alternative oxidase [Thalassiosira pseudonana
           CCMP1335]
          Length = 264

 Score =  157 bits (397), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 88/214 (41%), Positives = 117/214 (54%), Gaps = 16/214 (7%)

Query: 122 IDLKKHHA-PTTFSDKMALWTVKSLR--------WPTDLFFQRRYGCRAMMLETVAAVPG 172
           +D+K  H  P +  D++AL+ VK  R        W        +   RA+ LETVAA+PG
Sbjct: 14  LDIKMTHVEPESALDRLALFAVKVTRFGFDQATGWNRGSITTDKVLNRAIFLETVAAIPG 73

Query: 173 MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVF 232
           MV  ++ H +SLR     GG +   LEEA NERMHL+TF+ +  P +  R  V   Q  F
Sbjct: 74  MVAAIIRHFRSLRNMARDGGMLNMFLEEANNERMHLLTFIRMKDPGYLFRGAVVGSQFAF 133

Query: 233 FNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKEL-------DKGNIENVPAPAIATD 285
            +A+ + Y+ISP F HR VGY+EEEA  +YT+ +K +       D        AP IA  
Sbjct: 134 GSAFLVLYMISPAFCHRFVGYIEEEACATYTKIIKAIEEAPEGSDLAKWRTEEAPKIAKG 193

Query: 286 YWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
           YW L    T+ DV+  VRADEA HRDVNH  S +
Sbjct: 194 YWHLGEEGTVLDVMRAVRADEAEHRDVNHAVSGV 227


>gi|294872126|ref|XP_002766164.1| alternative oxidase, putative [Perkinsus marinus ATCC 50983]
 gi|239866823|gb|EEQ98881.1| alternative oxidase, putative [Perkinsus marinus ATCC 50983]
          Length = 327

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 84/199 (42%), Positives = 115/199 (57%), Gaps = 10/199 (5%)

Query: 126 KHHAPTTFSDKMALWTVKSLRWPTDLF-----FQ---RRYGCRAMMLETVAAVPGMVGGM 177
           +H  P T  D +A   V   R   D F     F+   + Y  R ++LET+A +PGMV  M
Sbjct: 89  EHLKPKTIRDHLAHSAVWLCRTGYDFFSGYDFFKHDYKMYARRLIVLETIAGIPGMVAAM 148

Query: 178 LLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYF 237
             H +SLRR E   GWI  L+EEAE+ERMHL+    +    W+ R+ + A QG FF  Y 
Sbjct: 149 NRHLRSLRRMERDNGWIPTLIEEAEDERMHLLISQGLVSHGWFLRSFLTAAQGAFFLFYA 208

Query: 238 LGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENV--PAPAIATDYWRLPPNSTL 295
             Y +SP+F HR VGYLEEEA  +YT  +++++ G +      AP  A  Y+ LP ++TL
Sbjct: 209 GAYSVSPRFCHRFVGYLEEEAFKTYTAIVEDVENGQVPEFDRSAPFYAKAYYCLPEDATL 268

Query: 296 KDVVLVVRADEAHHRDVNH 314
            D ++ +RADE  HRDVNH
Sbjct: 269 LDTLICMRADEDRHRDVNH 287


>gi|300120685|emb|CBK20239.2| Alternative oxydase (AOX) [Blastocystis hominis]
          Length = 302

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 78/185 (42%), Positives = 116/185 (62%), Gaps = 1/185 (0%)

Query: 134 SDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW 193
           SD++A   V  L +  +L+F+  Y  RA+ LE+VA+VPG+V   L H + LRR +    W
Sbjct: 80  SDRIAKGIVDMLFFCGNLYFRDNYIRRAIFLESVASVPGLVCSSLHHLRCLRRLQ-PNEW 138

Query: 194 IKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGY 253
           IK L++EAENERMHL+           ++  +  +Q  F + +   ++ +P+ +HR+VG+
Sbjct: 139 IKPLVDEAENERMHLLAVRTYTNLTIVQKLFIRILQVSFVSLFSFMFVFTPRTSHRLVGF 198

Query: 254 LEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVN 313
           LEE A+ SYTE +K +D G ++N  A  I  DYW LP ++TL+D +LV+RADEA HR VN
Sbjct: 199 LEEHAVDSYTEMIKRIDTGKLKNERATQITKDYWGLPEDATLRDALLVIRADEADHRLVN 258

Query: 314 HYASD 318
           H   D
Sbjct: 259 HTLGD 263


>gi|385304059|gb|EIF48094.1| alternative oxidase mitochondrial precursor [Dekkera bruxellensis
           AWRI1499]
          Length = 374

 Score =  156 bits (394), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/178 (42%), Positives = 112/178 (62%), Gaps = 8/178 (4%)

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
           R ++LE++A +PG V G L H +S+R       +I+ LL+EA NERMHL+TFM++ KP  
Sbjct: 171 RFIVLESIAGIPGSVAGFLRHLQSIRLMRRDKAFIETLLDEAYNERMHLLTFMKLGKPGR 230

Query: 220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKG---NIEN 276
           + R +++  QG+F N +FL Y+I PK  HR VGYLEEEA+ +YT  L+++  G    + +
Sbjct: 231 FARLMLWFGQGIFANLFFLTYIIRPKICHRFVGYLEEEAVLTYTRCLQDMRMGLNPQLYH 290

Query: 277 VPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLG 334
              P IA DYW L    T  D++L +RADEA HR+VNH  +++     +LR+   P  
Sbjct: 291 TGIPQIAKDYWHLTNKDTFYDMILYIRADEAKHREVNHTFANL-----KLRQDRNPFA 343


>gi|145548257|ref|XP_001459809.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124427636|emb|CAK92412.1| unnamed protein product [Paramecium tetraurelia]
          Length = 266

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/231 (37%), Positives = 127/231 (54%), Gaps = 28/231 (12%)

Query: 126 KHHAPTTFSDKMALWTVKSLR--------------WPTDLFFQRRYGCRAMMLETVAAVP 171
           +H    TF D  A + ++S+R              + ++L  ++++  R + LETVA VP
Sbjct: 41  EHKTAITFGDHFAYYFIQSMRLGFDVMSGYKKTLPFQSELVSEKKWINRVLFLETVAGVP 100

Query: 172 GMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGV 231
           G V GM  H +SLR  +   GWI  LLEEAENER+HL+TF+ + KP    R  V   Q  
Sbjct: 101 GFVAGMHRHLRSLRGMKRDQGWIHTLLEEAENERIHLLTFLNIKKPSLIFRTGVVLAQAW 160

Query: 232 FFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAT------- 284
           +   + + Y+  P+  HR+VGYLEEEA+ +YT  + E+++   E  P  +  T       
Sbjct: 161 YVALFGVAYIFWPRVCHRIVGYLEEEAVKTYTHMIHEIER---EGSPIHSWTTRKANQNS 217

Query: 285 -DYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLG 334
            +YW L  N+TL DVV  +R DE HH+DVNHY +D + Q    + +P P G
Sbjct: 218 IEYWGLDENATLLDVVKAIRKDEEHHKDVNHYFADDYTQS---KPNPFPPG 265


>gi|397914094|gb|AFO70098.1| alternative oxidase, partial [Fusarium pseudocircinatum]
          Length = 230

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 69/139 (49%), Positives = 96/139 (69%)

Query: 142 VKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEA 201
           V+ ++W    +   +   R + LE+VA VPGMVGGML H  SLRR +   GWI+ LLEE+
Sbjct: 74  VQCVQWIMGTWANMKKLIRFIFLESVAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEES 133

Query: 202 ENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHS 261
            NERMHL+TFM++ +P W+ + ++   QGVFFN+ F+ YL+SPK  HR VGYLEEEA+H+
Sbjct: 134 YNERMHLLTFMKMCEPGWFMKMMIIGAQGVFFNSLFVSYLVSPKIVHRFVGYLEEEAVHT 193

Query: 262 YTEFLKELDKGNIENVPAP 280
           YT  +KE++ GN+     P
Sbjct: 194 YTRCIKEIEDGNLPKWSDP 212


>gi|403357544|gb|EJY78400.1| Alternative oxidase isoform A [Oxytricha trifallax]
          Length = 275

 Score =  155 bits (391), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 81/205 (39%), Positives = 122/205 (59%), Gaps = 11/205 (5%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFF----QRR----YGCRAMMLETVAAVPGMVGGML 178
           H  P  F DK AL  +  LR   D       Q+R    +  R ++LE++A +PG+V G  
Sbjct: 41  HREPHNFRDKFALRWIGGLRLFVDALTGKDAQKRDAKTWFNRMVLLESIAPIPGLVVGTA 100

Query: 179 LHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 238
            + K+L+  +     +  +LEE+ENER HL  ++   KPK+  R  +   Q  F+N +FL
Sbjct: 101 KYFKNLKDMKTDRALVHFMLEESENERTHLYLWLNYQKPKFISRMGIAFKQIAFWNVFFL 160

Query: 239 GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN---IENVPAPAIATDYWRLPPNSTL 295
            Y+ SP   HR +GYLEEEAI++YT FLK++D GN   ++N PAP +A DY+ LP ++  
Sbjct: 161 TYIFSPYVCHRFMGYLEEEAIYNYTMFLKQIDNGNLKELQNEPAPKLAKDYYNLPEDAKF 220

Query: 296 KDVVLVVRADEAHHRDVNHYASDIH 320
           +D++L +RADE  HR+ NHY  ++ 
Sbjct: 221 RDMLLALRADEVVHREFNHYFCELQ 245


>gi|397914084|gb|AFO70093.1| alternative oxidase, partial [Fusarium pseudocircinatum]
          Length = 230

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 69/139 (49%), Positives = 96/139 (69%)

Query: 142 VKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEA 201
           V+ ++W    +   +   R + LE+VA VPGMVGGML H  SLRR +   GWI+ LLEE+
Sbjct: 74  VQCVQWIMGTWANIKKLIRFIFLESVAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEES 133

Query: 202 ENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHS 261
            NERMHL+TFM++ +P W+ + ++   QGVFFN+ F+ YL+SPK  HR VGYLEEEA+H+
Sbjct: 134 YNERMHLLTFMKMCEPGWFMKMMIIGAQGVFFNSLFVSYLVSPKIVHRFVGYLEEEAVHT 193

Query: 262 YTEFLKELDKGNIENVPAP 280
           YT  +KE++ GN+     P
Sbjct: 194 YTRCIKEIEDGNLPKWSDP 212


>gi|397914080|gb|AFO70091.1| alternative oxidase, partial [Fusarium solani]
          Length = 236

 Score =  154 bits (390), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 66/115 (57%), Positives = 88/115 (76%)

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
           R + LE++A VPGMVGGML H  SLRR +   GWI+ LLEE+ NERMHL+TFM++ +P W
Sbjct: 90  RFIFLESIAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGW 149

Query: 220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI 274
           + + ++   QGVFFN+ F+ YLISPK  HR VGYLEEEA+H+YT  +KE++ GN+
Sbjct: 150 FMKTMIIGAQGVFFNSLFVSYLISPKIVHRFVGYLEEEAVHTYTRCIKEIEDGNL 204


>gi|397914078|gb|AFO70090.1| alternative oxidase, partial [Fusarium solani]
          Length = 237

 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 66/115 (57%), Positives = 88/115 (76%)

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
           R + LE++A VPGMVGGML H  SLRR +   GWI+ LLEE+ NERMHL+TFM++ +P W
Sbjct: 91  RFIFLESIAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGW 150

Query: 220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI 274
           + + ++   QGVFFN+ F+ YLISPK  HR VGYLEEEA+H+YT  +KE++ GN+
Sbjct: 151 FMKMMIIGAQGVFFNSLFVSYLISPKIVHRFVGYLEEEAVHTYTRCIKEIEDGNL 205


>gi|397914082|gb|AFO70092.1| alternative oxidase, partial [Fusarium solani]
          Length = 237

 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 66/115 (57%), Positives = 88/115 (76%)

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
           R + LE++A VPGMVGGML H  SLRR +   GWI+ LLEE+ NERMHL+TFM++ +P W
Sbjct: 91  RFIFLESIAGVPGMVGGMLRHLGSLRRMKRDNGWIETLLEESYNERMHLLTFMKMCEPGW 150

Query: 220 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI 274
           + + ++   QGVFFN+ F+ YLISPK  HR VGYLEEEA+H+YT  +KE++ GN+
Sbjct: 151 FMKMMIIGAQGVFFNSLFVSYLISPKIVHRFVGYLEEEAVHTYTRCIKEIEDGNL 205


>gi|2662190|dbj|BAA23725.1| alternative oxidase [Chlamydomonas sp. W80]
          Length = 155

 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 69/127 (54%), Positives = 95/127 (74%), Gaps = 1/127 (0%)

Query: 194 IKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGY 253
           ++ALLEEAENERMHL+TF+E+ +P W  RA V   QG +FN +F+ YLISPKF H +VGY
Sbjct: 5   LQALLEEAENERMHLLTFLEMRQPSWMFRAAVLLAQGAYFNMFFISYLISPKFCHAVVGY 64

Query: 254 LEEEAIHSYTEFLKELDKGNI-ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDV 312
           LEEEA+ +YT  L ++D G++ ++ PAP     YW+L P++T++D++L VRADEA H  V
Sbjct: 65  LEEEAVKTYTHLLHDIDAGHVWKDKPAPKTGIAYWKLSPDATMRDLILAVRADEASHSLV 124

Query: 313 NHYASDI 319
           NH  S+I
Sbjct: 125 NHTLSEI 131


>gi|340502184|gb|EGR28896.1| hypothetical protein IMG5_166890 [Ichthyophthirius multifiliis]
          Length = 266

 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/213 (39%), Positives = 118/213 (55%), Gaps = 21/213 (9%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDL----------------FFQRRYGCRAMMLETVAAV 170
           H  P+T  D  A   ++SLR   D+                  ++++  R + LETVA V
Sbjct: 41  HLQPSTIGDSFANIFIQSLRLSFDIMSGYKQIFPWQDKTKPISEKKWLNRMLFLETVAGV 100

Query: 171 PGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQG 230
           PG V  M  H  SLR  +   GWI  LLEEAENERMHL+TFM+V KP    R  V   Q 
Sbjct: 101 PGFVAAMHRHLTSLRNMQRDYGWIHTLLEEAENERMHLLTFMKVQKPSPLFRMGVVFAQF 160

Query: 231 VFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDK-----GNIENVPAPAIATD 285
            +   + + Y+  PK  HR+VGYLEEEA+ +YT  ++ +++      + + + AP I+ +
Sbjct: 161 GYVGLFSILYMFFPKVCHRVVGYLEEEAVKTYTHCIEVINQEGSPISHWKTMVAPQISRN 220

Query: 286 YWRLPPNSTLKDVVLVVRADEAHHRDVNHYASD 318
           YW L  N++L DV+  +R DE HHRDVNH  +D
Sbjct: 221 YWYLSDNASLLDVIYAIRKDEEHHRDVNHTLAD 253


>gi|149239580|ref|XP_001525666.1| alternative oxidase 1, mitochondrial precursor [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146451159|gb|EDK45415.1| alternative oxidase 1, mitochondrial precursor [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 390

 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 91/239 (38%), Positives = 133/239 (55%), Gaps = 31/239 (12%)

Query: 110 FRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDL------------------ 151
           + P E Y  +++     H  P  F +K     +K+ R+  DL                  
Sbjct: 120 YSPAELYGVEVT-----HKTPANFREKFCYGLIKTCRFWFDLVTGYAEPKTGDPNEYKGT 174

Query: 152 ---FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHL 208
                + ++  R + LE++A VPG V   L   +SLR  +   G+I+  LEEAE ERMHL
Sbjct: 175 RWEMTESKWMTRIIFLESIAGVPGSVAAFLRQLQSLRLLKRDRGFIQTYLEEAEQERMHL 234

Query: 209 MTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 268
           +  +++ KP  + RA+++  QGVF NA+FL Y+ +P  A  +VGY+EEEA H+YTE LK+
Sbjct: 235 LVALKIGKPSLFTRAIMYVGQGVFANAFFLTYMANPNAAASIVGYIEEEACHTYTELLKD 294

Query: 269 LD-KGN---IENVPAPAIATDYWR-LPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQ 322
           LD KG     EN+  P IA +YW  L   ST KD++L +RADEA HR+VNH  +++  Q
Sbjct: 295 LDNKGKFPIFENMTIPKIAVEYWPGLNHQSTFKDLILQIRADEAKHREVNHTFANLDLQ 353


>gi|348681989|gb|EGZ21805.1| hypothetical protein PHYSODRAFT_247287 [Phytophthora sojae]
          Length = 297

 Score =  147 bits (372), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 81/182 (44%), Positives = 115/182 (63%), Gaps = 13/182 (7%)

Query: 125 KKHHAPTTFSDKMALWTVKSLRWPTDLF----------FQRRYGCRAMMLETVAAVPGMV 174
           + HH      +++A   VK+LR   D+            ++ +  R + LE+VA VPGMV
Sbjct: 116 QTHHPIVKMHERVAYMAVKALRTGFDVISGYRGPGGAMTEKDWLNRCLFLESVAGVPGMV 175

Query: 175 GGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFN 234
           GGML H +SLR  +   GWI  LLEEAENERMHL+ FM + +P ++ RALV   QGVFFN
Sbjct: 176 GGMLRHLRSLRLLKRDYGWIHTLLEEAENERMHLLIFMNIKQPGYFFRALVVGAQGVFFN 235

Query: 235 AYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIE---NVPAPAIATDYWRLPP 291
            +FL YL+SPK  HR VGYLEEEA+ +Y+  L++++ G+++      AP IA  Y++LP 
Sbjct: 236 GFFLTYLVSPKTCHRFVGYLEEEAVKTYSCLLQDIEDGHLDAWKEKKAPLIAQTYYKLPE 295

Query: 292 NS 293
           ++
Sbjct: 296 DA 297


>gi|290972516|ref|XP_002668998.1| alternative oxidase [Naegleria gruberi]
 gi|284082538|gb|EFC36254.1| alternative oxidase [Naegleria gruberi]
          Length = 362

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/201 (41%), Positives = 113/201 (56%), Gaps = 7/201 (3%)

Query: 125 KKHHAPTTFSDKMALW-TVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKS 183
           +K   P   +D+ A W   + +       F R     ++ LET++A PGMVGGM  H  S
Sbjct: 149 EKRMEPRNRTDRWAQWWARRCVARILKFLFGRNMLRYSVFLETMSATPGMVGGMWRHFAS 208

Query: 184 LR-----RFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFL 238
           LR     R +     + ALLEEAEN RMH++  +E+      ER L+   Q  F   YF 
Sbjct: 209 LRSKPIDRCKKEHLRVGALLEEAENHRMHMLVLLEMTHQNILERILMVVAQLSFSQYYFY 268

Query: 239 GYLISPK-FAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKD 297
            Y ++ K F+HR VGYL E A+ SY   LK++D+  I N PAP +A +YW LP N+TL+D
Sbjct: 269 IYSLAGKTFSHRFVGYLAETAVESYGLVLKQIDEKKIANPPAPEMAINYWNLPKNATLRD 328

Query: 298 VVLVVRADEAHHRDVNHYASD 318
           V+L +R DE  HR+ NH  SD
Sbjct: 329 VILAIRMDECKHREFNHALSD 349


>gi|18642678|gb|AAL76179.1|AC074105_13 Putative alternative oxidase [Oryza sativa]
          Length = 243

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 92/143 (64%), Gaps = 24/143 (16%)

Query: 194 IKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGY 253
           +  + EEAENE+MHLMTFMEVAK +  +  + F     F ++                  
Sbjct: 125 VGGVDEEAENEQMHLMTFMEVAKLRCIDVTIFFVATNDFSSS------------------ 166

Query: 254 LEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVN 313
                  SYTE+LK+++ G IENVP P IA DYWRLP ++TLKDVV+VV ADEAHHRDVN
Sbjct: 167 ------DSYTEYLKDIEAGKIENVPTPPIAIDYWRLPADATLKDVVVVVCADEAHHRDVN 220

Query: 314 HYASDIHYQGRQLRESPAPLGYH 336
           H+ASD+H+QG  L+++PA L YH
Sbjct: 221 HFASDVHFQGMDLKDTPALLDYH 243


>gi|33328283|gb|AAQ09592.1| alternative oxidase [Cryptosporidium parvum]
          Length = 144

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/144 (48%), Positives = 95/144 (65%), Gaps = 3/144 (2%)

Query: 173 MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFME-VAKPKWYERALVFAVQGV 231
           MVG ML H  SLR+ +   GWI  LLEEAENERMHL+  ++ + KP    R  V   Q  
Sbjct: 1   MVGAMLRHFSSLRKMKRDNGWIHTLLEEAENERMHLLISLQLINKPSILTRVSVIGTQFA 60

Query: 232 FFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENV--PAPAIATDYWRL 289
           F   Y + Y+ISPK++HR VGYLEEEA+ +YT  ++E+DKG +      AP  A+ Y+ L
Sbjct: 61  FLIFYTVFYIISPKYSHRFVGYLEEEAVSTYTHLIEEIDKGLLPGFERKAPKFASVYYGL 120

Query: 290 PPNSTLKDVVLVVRADEAHHRDVN 313
           P ++T++D+ L +R DE+HHRDVN
Sbjct: 121 PEDATIRDLFLAMRRDESHHRDVN 144


>gi|126668999|ref|ZP_01739937.1| putative oxidase [Marinobacter sp. ELB17]
 gi|126626548|gb|EAZ97207.1| putative oxidase [Marinobacter sp. ELB17]
          Length = 142

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/119 (56%), Positives = 85/119 (71%)

Query: 124 LKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKS 183
           L KHH P+ FSD++A    + LR+  DLFF +RYG RA++LETVAAVPGMVGGM+ H +S
Sbjct: 17  LSKHHTPSGFSDRVAFRLTRLLRFFADLFFAKRYGHRAVVLETVAAVPGMVGGMVGHMRS 76

Query: 184 LRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLI 242
           LRR E +  WI  LLEEAENERMHLMTF+++A+P   ER L+   QG F  A++   L 
Sbjct: 77  LRRMEDNREWIHTLLEEAENERMHLMTFVQIAQPSVLERVLILLAQGFFLPAFYFSTLF 135


>gi|428172811|gb|EKX41717.1| hypothetical protein GUITHDRAFT_153725, partial [Guillardia theta
           CCMP2712]
          Length = 232

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 73/147 (49%), Positives = 89/147 (60%), Gaps = 8/147 (5%)

Query: 125 KKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGC--------RAMMLETVAAVPGMVGG 176
           K H  P   +D +AL  V++ RW  D     + G         RA+ LETVA VPGMVGG
Sbjct: 86  KTHVDPHDRADSLALSAVQAARWTFDTLSGYKIGNITESKVINRAIFLETVAGVPGMVGG 145

Query: 177 MLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAY 236
           ML H +SLR      GWI  LLEEAENERMHL+TF+ + KP    R  V   QG+F N +
Sbjct: 146 MLRHLRSLRTMNRDHGWIHTLLEEAENERMHLLTFVTIKKPGPIFRLAVIGTQGIFMNLF 205

Query: 237 FLGYLISPKFAHRMVGYLEEEAIHSYT 263
           FL Y++ PK  HR VGYLEEEA+ +YT
Sbjct: 206 FLTYMVYPKICHRFVGYLEEEAVKTYT 232


>gi|163796586|ref|ZP_02190545.1| Alternative oxidase [alpha proteobacterium BAL199]
 gi|159178146|gb|EDP62691.1| Alternative oxidase [alpha proteobacterium BAL199]
          Length = 146

 Score =  141 bits (355), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 65/113 (57%), Positives = 81/113 (71%)

Query: 206 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 265
           MHLMTF++VA+P   ER ++   Q VF+N YF  YL +PK AHRMV Y EEEA++SYT +
Sbjct: 1   MHLMTFVQVAQPTILERGIIMLTQAVFYNFYFFLYLFAPKTAHRMVAYFEEEAVNSYTNY 60

Query: 266 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASD 318
           L ++D G   N PAP IA  YW L P++TL+DVVL VRADEA HRD NH  +D
Sbjct: 61  LADIDAGRHPNPPAPEIAIKYWDLAPDATLRDVVLAVRADEAGHRDRNHDFAD 113


>gi|295646739|gb|ADG23120.1| alternative oxidase [Rhizoplaca chrysoleuca]
          Length = 180

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 61/121 (50%), Positives = 85/121 (70%)

Query: 154 QRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFME 213
           +R++  R + LE+VA VPGMV   + H  SLRR +   GWI+ LLEEA NERMHL+TFM+
Sbjct: 52  ERKWLIRFLFLESVAGVPGMVAASIRHLHSLRRLKRDNGWIETLLEEAYNERMHLLTFMK 111

Query: 214 VAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGN 273
           +A+P  + + ++   QGVF+N +F  YL+SP+  HR VGYLEEEA+ +YT  L +LD G 
Sbjct: 112 IAEPGRFMKLMILGAQGVFYNGFFFAYLLSPRTCHRFVGYLEEEAVLTYTRVLADLDAGR 171

Query: 274 I 274
           +
Sbjct: 172 L 172


>gi|14599478|gb|AAK70937.1| alternative oxidase 1c [Mangifera indica]
          Length = 78

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 63/76 (82%), Positives = 68/76 (89%)

Query: 175 GGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFN 234
           GGMLLH KSLR+FEH GGWIKALLEEAENER HLM F+EVAKP+WYERAL+  VQGVF N
Sbjct: 3   GGMLLHFKSLRKFEHRGGWIKALLEEAENERTHLMIFVEVAKPRWYERALILRVQGVFLN 62

Query: 235 AYFLGYLISPKFAHRM 250
           AY LGYLISPKFAHR+
Sbjct: 63  AYSLGYLISPKFAHRI 78


>gi|388509390|gb|AFK42761.1| unknown [Lotus japonicus]
          Length = 176

 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 56/90 (62%), Positives = 71/90 (78%)

Query: 86  IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 145
           + SYWG+  PKV ++DG+EW WNCF PW++Y AD+SID+ KHH P T +DK+A   VK L
Sbjct: 64  VPSYWGITRPKVRREDGTEWPWNCFSPWDSYRADVSIDVTKHHLPKTVTDKVAFRAVKFL 123

Query: 146 RWPTDLFFQRRYGCRAMMLETVAAVPGMVG 175
           R  +DL+F+ RYGC AMMLET+AAVPGMVG
Sbjct: 124 RVLSDLYFKERYGCHAMMLETIAAVPGMVG 153


>gi|167405745|gb|ABZ79700.1| alternative oxidase [Solanum lycopersicum]
          Length = 163

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/112 (58%), Positives = 76/112 (67%), Gaps = 11/112 (9%)

Query: 45  LGSRNRSTLALGGEKEQQRE------ENVQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVN 98
           +GSR+ ST AL  +K+Q++E      EN  T  AA  GG G    K +VSYWGV   K  
Sbjct: 57  MGSRSASTAALN-DKQQEKESSDKKVENTATATAAVNGGVG----KSVVSYWGVPPSKAT 111

Query: 99  KDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTD 150
           K DG+EWKWNCFRPW  YEAD+SIDL KHHAP TF DK A WTVK LR+PTD
Sbjct: 112 KPDGTEWKWNCFRPWHPYEADMSIDLTKHHAPVTFLDKFAYWTVKILRFPTD 163


>gi|238684055|gb|ACR54256.1| alternative oxidase [Anadara ovalis]
          Length = 109

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/109 (51%), Positives = 80/109 (73%), Gaps = 3/109 (2%)

Query: 197 LLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEE 256
           LLEEAENERMHLMT +++ +P W  R  V   QGVF  ++ L YL+SP+F HR VGYLEE
Sbjct: 1   LLEEAENERMHLMTALQLKQPSWLLRQCVVLAQGVFVTSFSLSYLVSPRFCHRFVGYLEE 60

Query: 257 EAIHSYTEFLKELDKGNIE---NVPAPAIATDYWRLPPNSTLKDVVLVV 302
           EA+ +YT+ L+++++G +E     PAP +A  YW+L P +T+KDV+L++
Sbjct: 61  EAVKTYTKCLEDIEEGTMEIWKTKPAPDVAVRYWKLDPAATMKDVILMI 109


>gi|218198261|gb|EEC80688.1| hypothetical protein OsI_23112 [Oryza sativa Indica Group]
          Length = 91

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 64/131 (48%), Positives = 78/131 (59%), Gaps = 40/131 (30%)

Query: 206 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 265
           MHLMTFMEVAK +                                          SYTE+
Sbjct: 1   MHLMTFMEVAKLR----------------------------------------CDSYTEY 20

Query: 266 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 325
           LK+++ G IENVP P IA DYWRLP ++TLKDVV+VVRADEAHHRDVNH+ASD+H+QG  
Sbjct: 21  LKDIEAGKIENVPTPPIAIDYWRLPADATLKDVVVVVRADEAHHRDVNHFASDVHFQGMD 80

Query: 326 LRESPAPLGYH 336
           L+++PA L YH
Sbjct: 81  LKDTPALLDYH 91


>gi|110288605|gb|ABB46743.2| transposon protein, putative, unclassified [Oryza sativa Japonica
           Group]
          Length = 264

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 52/76 (68%), Positives = 65/76 (85%)

Query: 261 SYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIH 320
           SYTE+LK+++ G IENVP P IA DYWRLP ++TLKDVV+VV ADEAHHRDVNH+ASD+H
Sbjct: 189 SYTEYLKDIEAGKIENVPTPPIAIDYWRLPADATLKDVVVVVCADEAHHRDVNHFASDVH 248

Query: 321 YQGRQLRESPAPLGYH 336
           +QG  L+++PA L YH
Sbjct: 249 FQGMDLKDTPALLDYH 264


>gi|238684059|gb|ACR54258.1| alternative oxidase, partial [Mercenaria mercenaria]
          Length = 109

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 53/109 (48%), Positives = 77/109 (70%), Gaps = 3/109 (2%)

Query: 197 LLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEE 256
           LLEEAENERMHLMT +++ +P    +  V   QGVF   + + YLISP+F HR VGYLEE
Sbjct: 1   LLEEAENERMHLMTALQLKQPSRLFKWCVIGTQGVFVGMFSVWYLISPRFCHRFVGYLEE 60

Query: 257 EAIHSYTEFLKELDKGNIEN---VPAPAIATDYWRLPPNSTLKDVVLVV 302
           EA+ +YT+ L++++ G +E+    P+P +A  YW LP ++T+KDV+L +
Sbjct: 61  EAVKTYTKCLEDIESGALEHWKTQPSPEVAITYWNLPEDATMKDVILAI 109


>gi|238684053|gb|ACR54255.1| alternative oxidase [Crassostrea virginica]
          Length = 109

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 53/109 (48%), Positives = 75/109 (68%), Gaps = 3/109 (2%)

Query: 197 LLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEE 256
           LLEEAENERMHLMT +++ +P W  R  V   QG F   +   YL+SP+F HR VGYLEE
Sbjct: 1   LLEEAENERMHLMTALQLRQPSWLFRMGVIVSQGTFVTMFSGAYLLSPRFCHRFVGYLEE 60

Query: 257 EAIHSYTEFLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVV 302
           EA+ +Y++ LK+++ G +   +   AP +AT YW+LP  +++KDVVL +
Sbjct: 61  EAVFTYSKCLKDIESGPLKHWQTQKAPDVATRYWKLPETASMKDVVLAI 109


>gi|238684057|gb|ACR54257.1| alternative oxidase, partial [Ephydatia muelleri]
          Length = 109

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/109 (46%), Positives = 75/109 (68%), Gaps = 3/109 (2%)

Query: 197 LLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEE 256
           LLE+AENERMHL+T + + KP  + R +V A QGVF    +  Y +SP+F HR VGYLEE
Sbjct: 1   LLEDAENERMHLLTALALKKPGPFFRLIVMAGQGVFVTLXWASYQVSPRFCHRFVGYLEE 60

Query: 257 EAIHSYTEFLKELDKGNIEN---VPAPAIATDYWRLPPNSTLKDVVLVV 302
           +A+ +YTE L  +D G+++    +PAP IA  YW+L  ++ ++DV+L +
Sbjct: 61  QAVGTYTECLHSIDNGDLKTWALLPAPPIAVQYWKLKKDAMMRDVILAI 109


>gi|323456007|gb|EGB11874.1| hypothetical protein AURANDRAFT_70672 [Aureococcus anophagefferens]
          Length = 3210

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/161 (39%), Positives = 86/161 (53%), Gaps = 6/161 (3%)

Query: 160  RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 219
            R ++LE+ A VPG V     H  SLR  +   G I   LEEAENERMHL+  M++ +   
Sbjct: 3015 RLIILESFAGVPGFVAAGFRHFYSLRELKRDHGAIFTFLEEAENERMHLLVCMKMFEASP 3074

Query: 220  YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDK------GN 273
              RALV A Q          Y  SP+  HR VGYLEE A+ +Y   +++         G 
Sbjct: 3075 ATRALVVAAQFTMTPLLCATYAASPRAMHRFVGYLEETAVMTYANLVEKAATPGTRLHGA 3134

Query: 274  IENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNH 314
               + AP IA  YW+L  +++  + +  + ADE+HHRDVNH
Sbjct: 3135 WAGLDAPDIAKSYWKLDDDASWAECLRHMLADESHHRDVNH 3175


>gi|340502185|gb|EGR28897.1| hypothetical protein IMG5_166900 [Ichthyophthirius multifiliis]
          Length = 398

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/135 (43%), Positives = 80/135 (59%), Gaps = 1/135 (0%)

Query: 154 QRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFME 213
           ++++  R + LETVA VPG V  M  +  SLR  +   GWI  LLEEAENERMHL+TFM+
Sbjct: 19  EKKWLNRMLFLETVAGVPGFVAAMHRNLTSLRNMQRDYGWIHTLLEEAENERMHLLTFMK 78

Query: 214 VAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDK-G 272
           V KP    R  V   Q  +   + + Y+  PK  HR+VGYLEEEA+ +YT  ++ L    
Sbjct: 79  VQKPSPLFRMGVVFAQFGYVGLFSILYMFFPKVCHRVVGYLEEEAVKTYTHCIEVLSPIS 138

Query: 273 NIENVPAPAIATDYW 287
           N + + A  I+  YW
Sbjct: 139 NWKTIMATQISRKYW 153


>gi|294462859|gb|ADE76971.1| unknown [Picea sitchensis]
          Length = 240

 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 44/66 (66%), Positives = 50/66 (75%)

Query: 89  YWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWP 148
           YWG+   K ++ DGS W WN FRPWE Y  D+SIDLKKHH P TF DK A WTVKSLR+P
Sbjct: 156 YWGLSPAKFSRKDGSSWPWNSFRPWETYTPDMSIDLKKHHVPKTFLDKFAYWTVKSLRFP 215

Query: 149 TDLFFQ 154
           TD+FFQ
Sbjct: 216 TDVFFQ 221


>gi|238487558|ref|XP_002375017.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
 gi|220699896|gb|EED56235.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
          Length = 142

 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 71/103 (68%), Gaps = 4/103 (3%)

Query: 222 RALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---ENVP 278
           R +V   QGVFFN +FL YL+SP+  HR VGYLEEEA+ +YT  +++++ G +     + 
Sbjct: 2   RLMVLGAQGVFFNGFFLSYLMSPRICHRFVGYLEEEAVLTYTRAIQDIEHGKLPKWTKLE 61

Query: 279 APAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYASDIH 320
           AP IA  YW++P    T+KD+++ VRADEA HR+VNH   +++
Sbjct: 62  APEIAVQYWKMPEGQRTMKDLLMYVRADEAKHREVNHTLGNLN 104


>gi|342184601|emb|CCC94083.1| unnamed protein product [Trypanosoma congolense IL3000]
          Length = 364

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 8/178 (4%)

Query: 120 LSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLL 179
           L  D   HH P  +SD   +++VK LRW  D  F+ RY  RA ML+T+A  P + G  + 
Sbjct: 92  LERDPLSHHKPGCWSDCFCVYSVKFLRWCVDKLFRERYIHRATMLKTIAPAPSLAGAFVA 151

Query: 180 HCK-----SLRRFEHSGGW---IKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGV 231
           + K     ++     SGG+   ++ L+ ++E+   H+   + + +    ERA    + G+
Sbjct: 152 NLKMFLWKNVTYVPSSGGFAAEVRVLMAQSESHASHINILLSMCEITLVERAAAVLLFGM 211

Query: 232 FFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRL 289
            F  + L +LI P+ A R++GYL EE++  +T  + +++ G +   P PA A  YW L
Sbjct: 212 HFFIFTLLFLIQPRMAFRLLGYLNEESVVIWTHMINDIELGKVVERPVPAAAIQYWGL 269


>gi|218196955|gb|EEC79382.1| hypothetical protein OsI_20294 [Oryza sativa Indica Group]
          Length = 128

 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/139 (44%), Positives = 76/139 (54%), Gaps = 19/139 (13%)

Query: 206 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 265
           MHLMTFMEVAKP+WYER LV AVQ VFFNAYFLGYL+SPK AHR+VGYLEEEA  +    
Sbjct: 1   MHLMTFMEVAKPRWYERTLVLAVQRVFFNAYFLGYLLSPKLAHRVVGYLEEEAPSTS--- 57

Query: 266 LKELDKGNIENVPAPAIATDYWRLPP--------NSTLKDVVLVVRADEAHHRDVNHYAS 317
            +                +     PP        +S+         +  +H  DV     
Sbjct: 58  -RTTRPARSRTSLRRRSPSTTGGSPPAPRSRTSSSSSTPTRRTTATSTISHRYDV----- 111

Query: 318 DIHYQGRQLRESPAPLGYH 336
             H+QG  L+++PAPL YH
Sbjct: 112 --HFQGMDLKDTPAPLDYH 128


>gi|407415182|gb|EKF36790.1| GTPase activating protein of Rab-like GTPase, putative [Trypanosoma
           cruzi marinkellei]
          Length = 372

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 88/172 (51%), Gaps = 9/172 (5%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 186
           H  P  F+D   ++ VK LRW  D  F+ RY  RA ML+ +A  P + G M+ H +++ +
Sbjct: 114 HSPPQRFTDHCCIYLVKLLRWCADKLFRERYLHRATMLKVIAPAPPLAGAMISHLRTILK 173

Query: 187 FEHSG---------GWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYF 237
            E+              + LL +AE+   H+   M + +  + ER     +Q + F  + 
Sbjct: 174 KENPAYIPGKGDFATETRGLLAQAESHASHIRILMLMTEITYVERVAALFLQAIHFAIFA 233

Query: 238 LGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRL 289
           L +L+SP+ A R++GYL EE++  +T  + ++D G +     P  A +YW L
Sbjct: 234 LLFLLSPRVAFRLMGYLGEESVVIWTHMINDIDLGKVTERALPQDAIEYWGL 285


>gi|71665747|ref|XP_819840.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70885159|gb|EAN97989.1| hypothetical protein, conserved [Trypanosoma cruzi]
 gi|219564532|dbj|BAH03832.1| alternative oxidase [Trypanosoma cruzi]
          Length = 366

 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 9/172 (5%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRR 186
           H  P  FSD   ++ VK LRW  D  F+ RY  RA ML+ +A  P + G M+ H + + +
Sbjct: 111 HSPPQRFSDHCCIYLVKLLRWCADKLFRERYLHRATMLKVIAPAPPLAGAMISHLRMILK 170

Query: 187 FEH------SGGW---IKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYF 237
            E+       G +    + LL +AE+   H+   M + +  + ER     +Q + F  + 
Sbjct: 171 KENPAYIPGKGDFATETRGLLAQAESHASHIRILMLLTEITYVERVAAVFLQAIHFAIFA 230

Query: 238 LGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRL 289
             +L+SP+ A R++GYL EE++  +T  + ++D G +     P  A +YW L
Sbjct: 231 FLFLLSPRVAFRLMGYLGEESVVIWTHMINDIDFGKVTERALPQDAIEYWGL 282


>gi|407849450|gb|EKG04187.1| GTPase activating protein of Rab-like GTPase, putative [Trypanosoma
           cruzi]
          Length = 366

 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 108/247 (43%), Gaps = 33/247 (13%)

Query: 67  VQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSI---- 122
           + TTG + A     K E R         P +  D G     + + P+    +  +     
Sbjct: 45  IPTTGGSDAAEVAAKREAR---------PALQNDHGQSHGSSLYMPFMGSSSRFTFASPI 95

Query: 123 ----DLK-------KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVP 171
               D+         H  P  FSD   ++ VK LRW  D  F+ RY  RA ML+ +A  P
Sbjct: 96  TTISDINALEGERLTHSPPQRFSDHCCIYLVKLLRWCADKLFRERYLHRATMLKVIAPAP 155

Query: 172 GMVGGMLLHCKSLRRFEH------SGGW---IKALLEEAENERMHLMTFMEVAKPKWYER 222
            + G M+ H + + + E+       G +    + LL +AE+   H+   M + +  + ER
Sbjct: 156 PLAGAMISHLRMILKKENPAYIPGKGDFATETRGLLAQAESHASHIRILMLMTEITYVER 215

Query: 223 ALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAI 282
                +Q   F  +   +L+SP+ A R++GYL EE++  +T  + ++D G +     P  
Sbjct: 216 IAAVFLQATHFAIFAFLFLLSPRVAFRLMGYLGEESVVIWTHMINDIDLGKVTERALPQD 275

Query: 283 ATDYWRL 289
           A +YW L
Sbjct: 276 AIEYWGL 282


>gi|254450111|ref|ZP_05063548.1| alternative oxidase [Octadecabacter arcticus 238]
 gi|198264517|gb|EDY88787.1| alternative oxidase [Octadecabacter arcticus 238]
          Length = 86

 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 59/74 (79%)

Query: 241 LISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVL 300
           +++P+ AHR+VGYLEEEA+ SYT++ +++D G ++NVP P IA  YW LP ++ L+DVV+
Sbjct: 1   MLAPRVAHRVVGYLEEEAVISYTQYHEKIDAGTVKNVPTPEIAKKYWNLPDDARLRDVVI 60

Query: 301 VVRADEAHHRDVNH 314
           V+R DEA HRD NH
Sbjct: 61  VIREDEAGHRDKNH 74


>gi|126668998|ref|ZP_01739936.1| alternative oxidase [Marinobacter sp. ELB17]
 gi|126626547|gb|EAZ97206.1| alternative oxidase [Marinobacter sp. ELB17]
          Length = 72

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/68 (61%), Positives = 55/68 (80%)

Query: 251 VGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHR 310
           +GY EE A++SY E+L E+D G +ENVPAP IA DYW+LP ++TL+DV++VVR DEA HR
Sbjct: 1   MGYFEEAAVYSYGEYLAEVDSGRLENVPAPQIAIDYWKLPADATLRDVIIVVRMDEAGHR 60

Query: 311 DVNHYASD 318
           DVNH  +D
Sbjct: 61  DVNHRFAD 68


>gi|340057567|emb|CCC51913.1| conserved hypothetical protein, fragment, partial [Trypanosoma
           vivax Y486]
          Length = 324

 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 88/173 (50%), Gaps = 9/173 (5%)

Query: 126 KHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCK-SL 184
            H  P  F+D   ++ VK LRW  D  F+ RY  RA ML+ +A  P + G  + + K  L
Sbjct: 117 SHCKPNCFNDYCCIYMVKLLRWCADKLFRERYIHRATMLKVIAPAPSLAGAFVANLKLFL 176

Query: 185 RRFEHS---GG-----WIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAY 236
           ++ + S   GG      ++ L+ +AE+   H    M+VA   + ER +   + G  F+ +
Sbjct: 177 KKGDASYLQGGPGFASEVRVLMAQAESHASHTHILMQVANITYVERVVALFLFGAHFSIF 236

Query: 237 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRL 289
              ++  P+ A R++GYL EE++  +T  + ++  G I +   P  A DYW L
Sbjct: 237 SFLFVFCPRMAFRLMGYLGEESVVIWTHMINDIVLGKIGDRAIPRAAFDYWSL 289


>gi|380474941|emb|CCF45511.1| alternative oxidase, partial [Colletotrichum higginsianum]
          Length = 241

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 59/80 (73%)

Query: 159 CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 218
            R + LE++A VPGMV GML H  SLRR +   GWI++LLEE+ NERMHL+TFM++++P 
Sbjct: 161 VRFIFLESIAGVPGMVAGMLRHLGSLRRMKRDNGWIESLLEESFNERMHLLTFMKMSEPG 220

Query: 219 WYERALVFAVQGVFFNAYFL 238
           W+ + ++   QGVF++  ++
Sbjct: 221 WFMKLMILGAQGVFYSGRWV 240


>gi|71748286|ref|XP_823198.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
           GUTat10.1]
 gi|70832866|gb|EAN78370.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 351

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 9/181 (4%)

Query: 118 ADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGG- 176
           A L  +   HH P  ++D   +  VK LRW  D  F+ RY  RA ML+ +A  P M G  
Sbjct: 79  AALERETLNHHEPNCWNDYCCVSLVKLLRWCADKLFRERYIHRATMLKAIAPAPAMAGAI 138

Query: 177 -----MLLHCKSLRRFEHSGGW---IKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
                M L  K        G +   ++ L+ + E+   H+   + + +    ER     +
Sbjct: 139 VANLRMYLRKKDATYLPSDGNFSSEVRVLMAQMESHAAHVNILLSMCEITTVERVAAVLL 198

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWR 288
            G+ +  + L +L+ P+ A R++GYL EE++  +T  + +++ G I   P P  A  YW 
Sbjct: 199 YGLHYFIFTLLFLLYPRMAFRLMGYLNEESVVIWTHMINDVELGKIVERPIPRAALQYWG 258

Query: 289 L 289
           L
Sbjct: 259 L 259


>gi|340057356|emb|CCC51701.1| putative alternative oxidase [Trypanosoma vivax Y486]
          Length = 213

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 56/92 (60%), Gaps = 8/92 (8%)

Query: 135 DKMALWTVKSLRWPTDLFFQRRYGC--------RAMMLETVAAVPGMVGGMLLHCKSLRR 186
           D +A   V++ RW  D F   R+G         R + LETVA VPGMVGGML H  SLR+
Sbjct: 86  DTLAYRLVRTCRWAFDTFSLYRFGSLTEQKVINRCLFLETVAGVPGMVGGMLRHLTSLRQ 145

Query: 187 FEHSGGWIKALLEEAENERMHLMTFMEVAKPK 218
                GWI  LL EAENERMHLMTF+E+ + +
Sbjct: 146 MRRDKGWINTLLVEAENERMHLMTFIELRQAR 177


>gi|397630745|gb|EJK69895.1| hypothetical protein THAOC_08808 [Thalassiosira oceanica]
          Length = 154

 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 58/96 (60%), Gaps = 10/96 (10%)

Query: 233 FNAYFL-GYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVP--------APAIA 283
           F  +FL  Y+ISP + HR VGY+EEEA H+YT  ++E+ K   E  P        AP IA
Sbjct: 19  FGCFFLTAYIISPAWCHRFVGYIEEEACHTYTRIVEEIQKAP-EGTPLAEWRTQAAPKIA 77

Query: 284 TDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDI 319
             YW L    T+ DV++ VRADEA HRDVNH  S +
Sbjct: 78  KGYWHLGEEGTVYDVMMAVRADEAEHRDVNHAVSGV 113


>gi|261333103|emb|CBH16098.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 351

 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 84/181 (46%), Gaps = 9/181 (4%)

Query: 118 ADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGG- 176
           A L  +   HH P  ++D   +  VK LRW  D  F+ RY  RA ML+ +A  P M G  
Sbjct: 79  AALERETLNHHEPNCWNDYCCVSLVKLLRWCADKLFRERYIHRATMLKAIAPAPAMAGAI 138

Query: 177 -----MLLHCKSLRRFEHSGGW---IKALLEEAENERMHLMTFMEVAKPKWYERALVFAV 228
                M L  K        G +   ++ L+ + E+   H+   + + +    ER     +
Sbjct: 139 VANLRMYLRKKDATYLPSHGNFSSEVRVLMAQMESHAAHVNILLSMCEITTVERVAAVLL 198

Query: 229 QGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWR 288
            G+ +  + L + + P+ A R++GYL EE++  +T  + +++ G I   P P  A  YW 
Sbjct: 199 YGLHYFIFTLLFFLYPRMAFRLMGYLNEESVVIWTHMINDVELGKIVERPIPRAALQYWG 258

Query: 289 L 289
           L
Sbjct: 259 L 259


>gi|348681992|gb|EGZ21808.1| hypothetical protein PHYSODRAFT_354419 [Phytophthora sojae]
          Length = 212

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 65/113 (57%), Gaps = 11/113 (9%)

Query: 115 AYEADLSIDLKKHHAPTT-FSDKMALWTVKSLRW----------PTDLFFQRRYGCRAMM 163
            Y+ D   D+++ H P     +++A   VK+LR           P     ++ +  R + 
Sbjct: 100 VYDLDKISDMQQTHHPIVKMHERVAYMAVKALRTGFDVISGYRGPGGAMTEKDWLNRCLF 159

Query: 164 LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAK 216
           LE+VA VPGMVGGML H +SLRR +   GWI  LLEEAENERMHL+ FM + +
Sbjct: 160 LESVAGVPGMVGGMLRHLRSLRRMKRDYGWIHTLLEEAENERMHLLIFMNLKQ 212


>gi|83308257|emb|CAJ44430.1| alternative oxidase [Cocos nucifera]
          Length = 64

 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/62 (54%), Positives = 47/62 (75%)

Query: 79  GNKDEKRIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMA 138
           G K +K +VSYWG+   KV K+DG+EWKW CF+PW++Y ++ SIDL KHH P T+ +K+A
Sbjct: 1   GGKKDKMLVSYWGMAPAKVVKEDGTEWKWPCFKPWDSYTSNQSIDLHKHHVPMTWGEKLA 60

Query: 139 LW 140
            W
Sbjct: 61  YW 62


>gi|222616184|gb|EEE52316.1| hypothetical protein OsJ_34333 [Oryza sativa Japonica Group]
          Length = 72

 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/64 (68%), Positives = 47/64 (73%), Gaps = 3/64 (4%)

Query: 162 MMLETVAAVPGMVGG---MLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK 218
           MMLETVAAVP    G   MLLH  SLR  +HS GWI+ LLEEAENERMHLM FM V K +
Sbjct: 1   MMLETVAAVPATGDGGRHMLLHLCSLRDIKHSDGWIRVLLEEAENERMHLMAFMAVPKRR 60

Query: 219 WYER 222
           WYER
Sbjct: 61  WYER 64


>gi|293338880|gb|ADE43747.1| alternative oxidase [Glugea plecoglossi]
          Length = 77

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 54/77 (70%), Gaps = 1/77 (1%)

Query: 173 MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVF 232
           ++GG+  H  SLR  + +   IK LL EAENER HL+TF+EV KP  +++  +  +Q VF
Sbjct: 1   LIGGLFNHLYSLRNLKQNHN-IKKLLMEAENERQHLLTFLEVMKPNLFDQIAIKMIQVVF 59

Query: 233 FNAYFLGYLISPKFAHR 249
           FN+YF+ YL++PK AHR
Sbjct: 60  FNSYFIFYLLAPKVAHR 76


>gi|384247842|gb|EIE21327.1| hypothetical protein COCSUDRAFT_48069 [Coccomyxa subellipsoidea
           C-169]
          Length = 680

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 95/186 (51%), Gaps = 9/186 (4%)

Query: 145 LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 204
            R P D  + RR     ++LE ++ VPG V  ++ H ++L      G ++++   E+ N 
Sbjct: 352 FRIPRDTVWFRR----VLLLECLSPVPGTVASIVAHVRALATLRGPGSFVESYQRESGNA 407

Query: 205 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 264
             HL+T +++ +P    RALV   Q  F   Y   Y ++P+  H  V +L      + + 
Sbjct: 408 HAHLLTLLQL-RPSLSLRALVLLSQAAFALPYAAAYAVAPRACHAFVCHLSGLTGEAISG 466

Query: 265 FLKELDKGNI---ENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHY 321
            L++LD G+I   + +PAP  A  YW LP  +T++ V+LVVRAD      +N  A    +
Sbjct: 467 ALRDLDSGSIPSWQRLPAPESAAAYWGLPEGATMRTVLLVVRADMVARSAINQDADPATF 526

Query: 322 Q-GRQL 326
           Q G QL
Sbjct: 527 QPGCQL 532


>gi|338227624|gb|AEI91024.1| alternative oxidase [Beauveria bassiana]
          Length = 58

 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 43/58 (74%)

Query: 200 EAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEE 257
           EA NERMHL+TFM++ +P W+ + ++   QGVFFN  FL YL +PK  HR VGYLEEE
Sbjct: 1   EAYNERMHLLTFMKMCEPGWFMKLMIIGAQGVFFNGMFLMYLANPKIVHRFVGYLEEE 58


>gi|117662855|gb|ABK55726.1| mitochondrial alternative oxidase [Cucumis sativus]
          Length = 55

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 45/55 (81%)

Query: 191 GGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPK 245
           GG ++ LLEEAENERMHLMT +E+ +PKW+ER LV  VQGVFFNA+F+ YL  P+
Sbjct: 1   GGGLRPLLEEAENERMHLMTMIELVQPKWHERLLVITVQGVFFNAFFVLYLTVPQ 55


>gi|1478343|gb|AAC34192.1| alternative oxidase Aox1 precursor [Glycine max]
          Length = 40

 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/40 (92%), Positives = 38/40 (95%)

Query: 209 MTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAH 248
           MTFMEVAKPKWYERALV  VQGVFFNAYFLGYL+SPKFAH
Sbjct: 1   MTFMEVAKPKWYERALVITVQGVFFNAYFLGYLLSPKFAH 40


>gi|145520557|ref|XP_001446134.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124413611|emb|CAK78737.1| unnamed protein product [Paramecium tetraurelia]
          Length = 143

 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 80/156 (51%), Gaps = 33/156 (21%)

Query: 180 HCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLG 239
           H +SLRR +   GWI  LLEEAENER+HL+TF+++ K       ++    G F       
Sbjct: 4   HLRSLRRMKIDQGWIHTLLEEAENERIHLLTFLKIKKT-----LIIIQNWGSF------S 52

Query: 240 YLISP--KFAHRMVGYLE--------EEAIHSYTEFLKELDKGNIENVPAPAIATDYWRL 289
           YL+ P       ++G L+           IH +T     L K N  ++       +YW L
Sbjct: 53  YLVIPISSVLKSVIGLLDTWKMWQDGSPPIHQWT-----LRKANHHSI-------EYWGL 100

Query: 290 PPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 325
             ++TL DVV  +R DE HH+D+NH+ +D + Q +Q
Sbjct: 101 EDDATLFDVVKGIRKDEEHHKDINHFFADDYTQFKQ 136


>gi|71564278|gb|AAZ38329.1| alternative oxidase [Metarhizium anisopliae]
          Length = 59

 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 45/59 (76%)

Query: 200 EAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEA 258
           EA NERMHL+TFM++ +P W+ + ++   QGVFFNA F+ YL+ P+  HR VGYLEEEA
Sbjct: 1   EAYNERMHLLTFMKMCEPGWFMKLMIIGAQGVFFNALFITYLLHPRIVHRFVGYLEEEA 59


>gi|41058326|gb|AAR99155.1| mitochondrial alternative oxidase [Petunia x hybrida]
          Length = 42

 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 37/42 (88%), Positives = 38/42 (90%)

Query: 209 MTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRM 250
           MTFMEVAKPKWYERALV AVQGVFFNAYF  YLISPK AHR+
Sbjct: 1   MTFMEVAKPKWYERALVIAVQGVFFNAYFAAYLISPKLAHRI 42


>gi|118429715|gb|ABK91846.1| mitochondrial alternative oxidase [Cryptosporidium parvum]
          Length = 187

 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 54/89 (60%), Gaps = 7/89 (7%)

Query: 125 KKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYG------CRAMM-LETVAAVPGMVGGM 177
           K H  P  F DKM+ + V +LR   DL  + + G      CR ++ LETVA VPGMVG M
Sbjct: 99  KTHLCPNGFKDKMSYYLVIALRKSFDLLTRYKKGHNEYQWCRRIIFLETVAGVPGMVGAM 158

Query: 178 LLHCKSLRRFEHSGGWIKALLEEAENERM 206
           L H  SLR+ +   GWI  LLEEAENE++
Sbjct: 159 LRHFSSLRKMKRDNGWIHTLLEEAENEKI 187


>gi|118429717|gb|ABK91847.1| mitochondrial alternative oxidase [Cryptosporidium suis]
          Length = 187

 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 54/89 (60%), Gaps = 7/89 (7%)

Query: 125 KKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYG------CRAMM-LETVAAVPGMVGGM 177
           K H  P  F DKM+ + V +LR   DL  + + G      CR ++ LETVA VPGMVG M
Sbjct: 99  KTHLCPNGFKDKMSYYLVIALRKSFDLLTRYKKGHNEYQWCRRIIFLETVAGVPGMVGAM 158

Query: 178 LLHCKSLRRFEHSGGWIKALLEEAENERM 206
           L H  SLR+ +   GWI  LLEEAENE++
Sbjct: 159 LRHFSSLRKMKRDNGWIHTLLEEAENEKI 187


>gi|41058330|gb|AAR99157.1| mitochondrial alternative oxidase [Petunia x hybrida]
          Length = 42

 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/42 (85%), Positives = 38/42 (90%)

Query: 209 MTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRM 250
           MTFMEVAKPKWYERALVF VQGVFFNAYF  YL+SPK AHR+
Sbjct: 1   MTFMEVAKPKWYERALVFTVQGVFFNAYFATYLVSPKLAHRI 42


>gi|37520170|ref|NP_923547.1| oxidase [Gloeobacter violaceus PCC 7421]
 gi|35211163|dbj|BAC88542.1| oxidase [Gloeobacter violaceus PCC 7421]
          Length = 238

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 86/193 (44%), Gaps = 21/193 (10%)

Query: 137 MALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKA 196
           M  + V  L +  D+ ++ R   R  +LETVA VP      +LH            W+K 
Sbjct: 1   MIRFLVSILVFVIDVLYKNRPYPRFYVLETVARVPYFSYLSVLHLYETLGLWRKSDWLKV 60

Query: 197 LLEEAENERMHLMTFMEVA-KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLE 255
              E  NE  HL+    +    +WY+R L  +   V++    + Y+ISP+ A+  +  +E
Sbjct: 61  HFAETWNELHHLLIMESLGGNDRWYDRLLAKSSALVYYWVIVVLYMISPRSAYEFMRQVE 120

Query: 256 EEAIHSYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLK 296
           E A H+Y EFLK  D   ++  PAP +A  Y+                   R P   TL 
Sbjct: 121 EHAFHTYDEFLKS-DGERLKLQPAPVVAVSYYLTGDLYMFDEFQTSRRPEERRPACDTLY 179

Query: 297 DVVLVVRADEAHH 309
           DV + +R DEA H
Sbjct: 180 DVFVNIRDDEAEH 192


>gi|41058332|gb|AAR99158.1| mitochondrial alternative oxidase [Petunia x hybrida]
          Length = 42

 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/42 (85%), Positives = 38/42 (90%)

Query: 209 MTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRM 250
           MTFMEVAKPKWYERALVF VQGVFFNAYF  YL+SPK AHR+
Sbjct: 1   MTFMEVAKPKWYERALVFTVQGVFFNAYFATYLLSPKLAHRI 42


>gi|119713229|gb|ABL97296.1| possible alternative respiratory pathway oxidase, partial
           [uncultured marine bacterium HF10_05C07]
          Length = 62

 Score = 78.6 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/57 (59%), Positives = 42/57 (73%)

Query: 262 YTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASD 318
           YTE+L E+DKG IEN  AP IA +YW L  ++TL+DVV+ VR DEA HRD NH  +D
Sbjct: 1   YTEYLDEIDKGQIENTQAPEIAINYWNLSKDATLRDVVIAVRNDEAGHRDKNHLIAD 57


>gi|118429709|gb|ABK91843.1| mitochondrial alternative oxidase [Cryptosporidium baileyi]
 gi|118429713|gb|ABK91845.1| mitochondrial alternative oxidase [Cryptosporidium baileyi]
          Length = 187

 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 67/114 (58%), Gaps = 12/114 (10%)

Query: 101 DGSEWKWNCFRP-WEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLF--FQRRY 157
           +G E+ +NC  P W+  E +     K H  P  F DK++ + V +LR   DL   +++R+
Sbjct: 78  EGKEYGFNC--PIWDLEEVNNV--QKTHFCPNGFKDKISYYLVIALRKSFDLLTRYKKRH 133

Query: 158 G----CRAMM-LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERM 206
                CR ++ LETVA VPGMVG ML H  SLR+ +   G I  LLEEAENE++
Sbjct: 134 NEYQWCRRIIFLETVAGVPGMVGAMLRHFSSLRKMKRDNGLIHTLLEEAENEKI 187


>gi|41058334|gb|AAR99159.1| mitochondrial alternative oxidase [Petunia x hybrida]
          Length = 42

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/42 (80%), Positives = 38/42 (90%)

Query: 209 MTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRM 250
           MTF+E++ PKWYERALVFAVQGVFFNAYFL YL SPK AHR+
Sbjct: 1   MTFIELSNPKWYERALVFAVQGVFFNAYFLAYLASPKLAHRI 42


>gi|118429707|gb|ABK91842.1| mitochondrial alternative oxidase [Cryptosporidium meleagridis]
 gi|118429711|gb|ABK91844.1| mitochondrial alternative oxidase [Cryptosporidium baileyi]
          Length = 186

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 66/113 (58%), Gaps = 12/113 (10%)

Query: 101 DGSEWKWNCFRP-WEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLF--FQRRY 157
           +G E+ +NC  P W+  E +     K H  P  F DK++ + V +LR   DL   +++R+
Sbjct: 78  EGKEYGFNC--PIWDLEEVNNV--QKTHFCPNGFKDKISYYLVIALRKSFDLLTRYKKRH 133

Query: 158 G----CRAMM-LETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 205
                CR ++ LETVA VPGMVG ML H  SLR+ +   G I  LLEEAENE+
Sbjct: 134 NEYQWCRRIIFLETVAGVPGMVGAMLRHFSSLRKMKRDNGLIHTLLEEAENEK 186


>gi|293338882|gb|ADE43748.1| alternative oxidase [Spraguea lophii]
          Length = 78

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 49/77 (63%)

Query: 173 MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVF 232
           MVGG+  H  SLR    +   I+ LL+EAENER HL+TF+++ KP  ++R ++   Q VF
Sbjct: 1   MVGGLFHHLYSLRNLVDNKERIQILLKEAENERQHLLTFLKIMKPNIFDRFVIKITQAVF 60

Query: 233 FNAYFLGYLISPKFAHR 249
           FN Y + Y + P+  HR
Sbjct: 61  FNTYMVFYFLFPRTCHR 77


>gi|255615497|ref|XP_002539678.1| hypothetical protein RCOM_1998260 [Ricinus communis]
 gi|223503608|gb|EEF22705.1| hypothetical protein RCOM_1998260 [Ricinus communis]
          Length = 65

 Score = 73.2 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 42/60 (70%)

Query: 121 SIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH 180
           +IDL  HH P   SD +A   VK+LR+  D FF +RYG RA++LETVAAVPGMVG  L H
Sbjct: 5   AIDLSIHHKPAGVSDTIAFGFVKALRFCADTFFAKRYGHRAVVLETVAAVPGMVGATLNH 64


>gi|168043241|ref|XP_001774094.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674640|gb|EDQ61146.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 240

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 83/184 (45%), Gaps = 29/184 (15%)

Query: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 209
           D+F++ R   R  +LET+A VP      +LH      +     +IK    E+ NE  HL+
Sbjct: 29  DIFYKNRDYARFYVLETIARVPYFAFVSVLHMYESFGWWRRSDYIKVHFAESWNELHHLL 88

Query: 210 TFMEV--AKPKWYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYLEEEAIHSYTE 264
           T ME      +W +R   F  Q +    YF+    YL+SP+ A+     +E+ A H+Y E
Sbjct: 89  T-MEALGGDERWVDR---FLAQHIAVGYYFMTVVMYLLSPRMAYHFSECVEKHAFHTYDE 144

Query: 265 FLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRAD 305
           F+K L    ++ +PAP +A  Y+                   R P    L DV   +R D
Sbjct: 145 FIK-LHGEELKKLPAPEVAVKYYTSGDLYLFDEFQTDRTPNTRRPKIDNLYDVFYNIRED 203

Query: 306 EAHH 309
           EA H
Sbjct: 204 EAEH 207


>gi|428219613|ref|YP_007104078.1| plastoquinol oxidase immutans [Pseudanabaena sp. PCC 7367]
 gi|427991395|gb|AFY71650.1| plastoquinol oxidase immutans [Pseudanabaena sp. PCC 7367]
          Length = 243

 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 21/188 (11%)

Query: 142 VKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEA 201
           V  L +  ++ ++ R   R  +LETVA VP      +LH      F     W+K    E+
Sbjct: 6   VSILVFVINVLYRDRPIPRFYVLETVARVPYFAYLSVLHLYETLGFWRRADWLKVHFAES 65

Query: 202 ENERMHLMTFMEVA-KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 260
            NE  HL+   E+      ++R L      V++      Y+++PK A+  +  +EE A H
Sbjct: 66  WNELHHLLIAEELGGNNNPFDRLLAKTAALVYYWIVVGIYVVNPKAAYHFMEMVEEHAYH 125

Query: 261 SYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLV 301
           +Y E+LKE ++  +++ PAPAIA  Y+                   R P    L DV + 
Sbjct: 126 TYDEYLKE-NEAELKSKPAPAIAVKYYRDGDLYLFDEFQTGQVANSRRPKVDNLYDVFVA 184

Query: 302 VRADEAHH 309
           +R DEA H
Sbjct: 185 IRDDEAEH 192


>gi|41058328|gb|AAR99156.1| mitochondrial alternative oxidase [Petunia x hybrida]
          Length = 42

 Score = 70.5 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 35/42 (83%)

Query: 209 MTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRM 250
           MT +E+ +PKWYER LV AVQGVFFN YF+ YL+SPK AHR+
Sbjct: 1   MTMVELVQPKWYERLLVLAVQGVFFNLYFVLYLVSPKLAHRI 42


>gi|255086799|ref|XP_002509366.1| predicted protein [Micromonas sp. RCC299]
 gi|226524644|gb|ACO70624.1| predicted protein [Micromonas sp. RCC299]
          Length = 214

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 79/180 (43%), Gaps = 23/180 (12%)

Query: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 209
           D  ++ R   R   LETVA VP      +LH      F     ++K    +  NE  HL+
Sbjct: 21  DKLYEGRSYARFYALETVARVPYFSFLSVLHLYETLGFWRRADYLKVHFAQTMNEFHHLL 80

Query: 210 TFMEVAKPKWYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYLEEEAIHSYTEFL 266
               +   K +          VF+  YF+    YL+SP+ A+ +   +EE A H+Y EFL
Sbjct: 81  IMESMGGDKRFTDRFFAQHMAVFY--YFIACAMYLVSPRMAYNLSEQVEEHAYHTYDEFL 138

Query: 267 KELDKGNIENVPAPAIATDYW-----------------RLPPNSTLKDVVLVVRADEAHH 309
           KE ++  +++ P P IAT Y+                 R P    L DV + VR DEA H
Sbjct: 139 KE-NELELKSKPPPPIATHYYTEGDLFLFDEFQTGAARRRPSIDNLYDVFVNVRNDEAEH 197


>gi|350536613|ref|NP_001234511.1| plastid quinol oxidase [Solanum lycopersicum]
 gi|9937099|gb|AAG02286.1|AF177979_1 plastid terminal oxidase [Solanum lycopersicum]
 gi|9937101|gb|AAG02287.1|AF177980_1 plastid terminal oxidase [Solanum lycopersicum]
 gi|10505366|gb|AAG18449.1|AF302931_1 plastid quinol oxidase [Solanum lycopersicum]
 gi|10505368|gb|AAG18450.1|AF302932_1 plastid quinol oxidase [Solanum lycopersicum]
          Length = 366

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 82/186 (44%), Gaps = 33/186 (17%)

Query: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW-----IKALLEEAENE 204
           D  +  R   R  +LET+A VP      +LH      +E  G W     +K    E+ NE
Sbjct: 132 DTLYHNRNYARFFVLETIARVPYFAFISVLH-----MYESFGWWRRADYMKVHFAESWNE 186

Query: 205 RMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYT 263
             HL+   E+     W++R L   +   ++    L Y +SP+ A+     +E  A  +Y 
Sbjct: 187 MHHLLIMEELGGNAWWFDRFLAQHIAIFYYFMTVLMYALSPRMAYHFSECVESHAYETYD 246

Query: 264 EFLKELDKG-NIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVR 303
           +F+K  D+G  ++N+PAP IA DY+                   R P    L DV + +R
Sbjct: 247 KFIK--DQGEELKNLPAPKIAVDYYTGGDLYLFDEFQTSREPNTRRPKIDNLYDVFMNIR 304

Query: 304 ADEAHH 309
            DEA H
Sbjct: 305 DDEAEH 310


>gi|168027826|ref|XP_001766430.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682339|gb|EDQ68758.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 245

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 86/189 (45%), Gaps = 39/189 (20%)

Query: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW-----IKALLEEAENE 204
           D+F++ R   R  +LET+A +P            L  +E  G W     +K    E+ NE
Sbjct: 29  DVFYKNRDYARFYVLETIARIP-----YFAFVSVLNMYESFGWWRRADYLKVHFAESWNE 83

Query: 205 RMHLMTFMEV--AKPKWYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYLEEEAI 259
             HL+T ME      +W +R   F  Q +    YF+    YL+SP+ A+     +++ A 
Sbjct: 84  LHHLLT-MEALGGDERWVDR---FLAQHIAVGYYFMTVVMYLLSPRMAYHFSECVKKHAF 139

Query: 260 HSYTEFLKELDKGNIENVPAPAIATDYWR-------------LPPNS------TLKDVVL 300
           H+Y EF+  L+   ++N+PAP +A  Y+               PPN+       L DV  
Sbjct: 140 HTYDEFIN-LNAEELKNLPAPEVAVKYYTSGDLYLFDEFQTACPPNTRQPKVENLYDVFC 198

Query: 301 VVRADEAHH 309
            +R DEA H
Sbjct: 199 NIREDEAEH 207


>gi|443311406|ref|ZP_21041035.1| Alternative oxidase [Synechocystis sp. PCC 7509]
 gi|442778603|gb|ELR88867.1| Alternative oxidase [Synechocystis sp. PCC 7509]
          Length = 247

 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 21/180 (11%)

Query: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 209
           + F++ R   R  +LETVA VP      +LH      +     WIK    E+ NE  HL+
Sbjct: 14  NTFYRTRIYPRFYVLETVARVPYFAFTSVLHLYETMGWWRKADWIKVHFAESWNELHHLL 73

Query: 210 TFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 268
               +   + W +R +      V++      Y++SP+ A+  +  +EE A H+Y  F+KE
Sbjct: 74  IAESLGGNQYWIDRFVAHTGAFVYYWIVVFVYVLSPRHAYNFMQQVEEHAYHTYNAFIKE 133

Query: 269 LDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 309
                ++ +PAP IA +Y+                   R P    L DV + +R DE  H
Sbjct: 134 -HGDELKTLPAPQIAINYYQDGDLYLFDEFQTTRVPQERRPKIENLYDVFVAIREDELEH 192


>gi|357447777|ref|XP_003594164.1| Alternative oxidase [Medicago truncatula]
 gi|87240787|gb|ABD32645.1| Alternative oxidase [Medicago truncatula]
 gi|355483212|gb|AES64415.1| Alternative oxidase [Medicago truncatula]
          Length = 342

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 82/185 (44%), Gaps = 31/185 (16%)

Query: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW-----IKALLEEAENE 204
           D  ++ R   R  +LET+A VP      +LH      +E  G W     +K    E+ NE
Sbjct: 109 DALYRDRNYARFFVLETIARVPYFAFMSILH-----MYESFGWWRRADYLKVHFAESWNE 163

Query: 205 RMHLMTFMEVAKPKW-YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYT 263
             HL+   E+    W ++R L   +   ++    L YLISP+ A+     +E  A  +Y 
Sbjct: 164 MHHLLIMEELGGNAWWFDRFLAQHIAIFYYFMTALMYLISPRMAYHFSECVESHAFETYD 223

Query: 264 EFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRA 304
           +F+KE  +  ++ +PAP +A +Y+                   R P    L DV L +R 
Sbjct: 224 KFIKEQGE-ELKKMPAPEVAVNYYTGGDLYLFDEFQTSRVPNTRRPTIDNLYDVFLNIRD 282

Query: 305 DEAHH 309
           DEA H
Sbjct: 283 DEAEH 287


>gi|388507484|gb|AFK41808.1| unknown [Medicago truncatula]
          Length = 342

 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 82/185 (44%), Gaps = 31/185 (16%)

Query: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW-----IKALLEEAENE 204
           D  ++ R   R  +LET+A VP      +LH      +E  G W     +K    E+ NE
Sbjct: 109 DALYRDRNYARFFVLETIARVPYFAFMSILH-----MYESFGWWRRADYLKVHFAESWNE 163

Query: 205 RMHLMTFMEVAKPKW-YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYT 263
             HL+   E+    W ++R L   +   ++    L YLISP+ A+     +E  A  +Y 
Sbjct: 164 MHHLLIMEELGGNAWWFDRFLAQHIAIFYYFMTALMYLISPRMAYHFSECVESHAFETYD 223

Query: 264 EFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRA 304
           +F+KE  +  ++ +PAP +A +Y+                   R P    L DV L +R 
Sbjct: 224 KFIKEQGE-ELKKMPAPEVAVNYYTGGDLYLFDEFRTSRVPNTRRPTIDNLYDVFLNIRD 282

Query: 305 DEAHH 309
           DEA H
Sbjct: 283 DEAEH 287


>gi|1478345|gb|AAB36072.1| Aox2 [Glycine max]
          Length = 40

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/40 (70%), Positives = 34/40 (85%)

Query: 209 MTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAH 248
           MT +E+ KPKWYER LV AVQGVFFNA+F+ Y++SPK AH
Sbjct: 1   MTMVELVKPKWYERLLVLAVQGVFFNAFFVLYILSPKVAH 40


>gi|254441495|ref|ZP_05054988.1| hypothetical protein OA307_910 [Octadecabacter antarcticus 307]
 gi|198251573|gb|EDY75888.1| hypothetical protein OA307_910 [Octadecabacter antarcticus 307]
          Length = 71

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/51 (54%), Positives = 39/51 (76%)

Query: 264 EFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNH 314
           ++L+++D G +ENV AP IA  YW LP ++ L+DVV+V+R DEA HRD NH
Sbjct: 9   QYLEKIDAGKVENVLAPEIAKKYWNLPDDARLRDVVIVIREDEAGHRDKNH 59


>gi|427724949|ref|YP_007072226.1| plastoquinol oxidase immutans [Leptolyngbya sp. PCC 7376]
 gi|427356669|gb|AFY39392.1| plastoquinol oxidase immutans [Leptolyngbya sp. PCC 7376]
          Length = 235

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 21/170 (12%)

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK- 218
           R  +LETVA VP      +LH      F     W+K    E+ NE  HL+    +     
Sbjct: 24  RFYVLETVARVPYFSYLSVLHLYETLGFWRKADWLKIHFAESWNELHHLLIMESLGGSNF 83

Query: 219 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVP 278
           W +RAL   V   ++      Y++SP+ A+R +  +EE A  +Y +FLK  +   ++  P
Sbjct: 84  WLDRALAKTVALAYYWIIVGIYIVSPRSAYRFMELVEEHAYATYDKFLKA-EAETLKGQP 142

Query: 279 APAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 309
           APAIA +Y+                   R P    L DV + +R DE  H
Sbjct: 143 APAIAINYYRDGDLYLFDEFQTGQIPEHRRPKVDNLYDVFVAIRDDEQEH 192


>gi|428307127|ref|YP_007143952.1| plastoquinol oxidase immutans [Crinalium epipsammum PCC 9333]
 gi|428248662|gb|AFZ14442.1| plastoquinol oxidase immutans [Crinalium epipsammum PCC 9333]
          Length = 240

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 21/193 (10%)

Query: 137 MALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKA 196
           M  + V  L +  +  ++ R   R  +LETVA VP      +LH      +     W+K 
Sbjct: 1   MIRFLVDVLVFVINTLYRDRAYQRFYVLETVARVPYFSFLSVLHLYETLGWWRKADWLKV 60

Query: 197 LLEEAENERMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLE 255
              E+ NE  HL+    +   K W +R        V++      YL+SP+ A+  +  +E
Sbjct: 61  HFAESWNELHHLLIMESLGGNKHWGDRLFAQTTALVYYWVVVALYLVSPRTAYNFMQLVE 120

Query: 256 EEAIHSYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLK 296
           E A H+Y  F+KE  +  ++  PAP +A +Y+                   R P    L 
Sbjct: 121 EHAHHTYETFVKE-HEAELKAAPAPLVAINYYRDGDLYLFDEFQTGVKPESRRPAVDNLY 179

Query: 297 DVVLVVRADEAHH 309
           DV + +R DEA H
Sbjct: 180 DVFVNIRDDEAEH 192


>gi|2832676|emb|CAA16776.1| putative protein [Arabidopsis thaliana]
 gi|7269072|emb|CAB79181.1| putative protein [Arabidopsis thaliana]
          Length = 335

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 5/164 (3%)

Query: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 209
           D  ++ R   R  +LET+A VP      +LH      +     ++K    E+ NE  HL+
Sbjct: 121 DTLYRDRTYARFFVLETIARVPYFAFMSVLHMYETFGWWRRADYLKVHFAESWNEMHHLL 180

Query: 210 TFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 268
              E+     W++R L   +   ++      Y++SP+ A+     +E  A  +Y +FLK 
Sbjct: 181 IMEELGGNSWWFDRFLAQHIATFYYFMTVFLYILSPRMAYHFSECVESHAYETYDKFLKA 240

Query: 269 LDKGNIENVPAPAIATDYWR---LPPNSTLKDVVLVVRADEAHH 309
             +  ++N+PAP IA  Y+    L     L DV + +R DEA H
Sbjct: 241 SGE-ELKNMPAPDIAVKYYTGGDLYLFENLYDVFVNIRDDEAEH 283


>gi|449455371|ref|XP_004145426.1| PREDICTED: ubiquinol oxidase 4, chloroplastic/chromoplastic-like
           [Cucumis sativus]
 gi|449525172|ref|XP_004169592.1| PREDICTED: ubiquinol oxidase 4, chloroplastic/chromoplastic-like
           [Cucumis sativus]
          Length = 355

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 31/185 (16%)

Query: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW-----IKALLEEAENE 204
           D F+  R+  R  +LET+A VP      +LH      +E  G W     +K    E+ NE
Sbjct: 118 DAFYHDRHYARFFVLETIARVPYFAFVSVLH-----MYESFGWWRRADYLKVHFAESWNE 172

Query: 205 RMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYT 263
             HL+   E+     W++R L   +   ++      Y+ISP+ A+     +E  A  +Y 
Sbjct: 173 MHHLLIMEELGGNDWWFDRFLAQHIAVAYYFMTVFMYMISPRMAYHFSECVESHAFSTYD 232

Query: 264 EFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRA 304
           +FLK  +   ++  PAP +A  Y+                   R P   +L DV + +R 
Sbjct: 233 KFLK-AEGEELKKQPAPEVAVKYYTEGDLYLFDEFQTSRAPKSRRPKIESLYDVFMNIRD 291

Query: 305 DEAHH 309
           DEA H
Sbjct: 292 DEAEH 296


>gi|3929647|emb|CAA06190.1| Immutans protein [Arabidopsis thaliana]
          Length = 351

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 21/180 (11%)

Query: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 209
           D  ++ R   R  +LET+A VP      +LH      +     ++K    E+ NE  HL+
Sbjct: 121 DTLYRDRTYARFFVLETIARVPYFAFMSVLHMYETFGWWRRADYLKVHFAESWNEMHHLL 180

Query: 210 TFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 268
              E+     W++R L   +   ++      Y++SP+ A+     +E  A  +Y +FLK 
Sbjct: 181 IMEELGGNSWWFDRFLAQHIATFYYFMTVFLYILSPRMAYHFSECVESHAYETYDKFLKA 240

Query: 269 LDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 309
             +  ++N+PAP IA  Y+                   R P    L DV + +R DEA H
Sbjct: 241 SGE-ELKNMPAPDIAVKYYTGGDLYLFDEFQTSRTPNTRRPVIENLYDVFVNIRDDEAEH 299


>gi|18415888|ref|NP_567658.1| alternative oxidase 4 [Arabidopsis thaliana]
 gi|85681033|sp|Q56X52.2|AOX4_ARATH RecName: Full=Ubiquinol oxidase 4, chloroplastic/chromoplastic;
           AltName: Full=Alternative oxidase 4; AltName:
           Full=Plastid terminal oxidase; AltName: Full=Protein
           IMMUTANS; Flags: Precursor
 gi|11692822|gb|AAG40014.1|AF324663_1 AT4g22260 [Arabidopsis thaliana]
 gi|11908102|gb|AAG41480.1|AF326898_1 unknown protein [Arabidopsis thaliana]
 gi|12642914|gb|AAK00399.1|AF339717_1 unknown protein [Arabidopsis thaliana]
 gi|4138855|gb|AAD03599.1| IMMUTANS [Arabidopsis thaliana]
 gi|15010796|gb|AAK74057.1| AT4g22260/T10I14_90 [Arabidopsis thaliana]
 gi|23308315|gb|AAN18127.1| At4g22260/T10I14_90 [Arabidopsis thaliana]
 gi|332659183|gb|AEE84583.1| alternative oxidase 4 [Arabidopsis thaliana]
          Length = 351

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 21/180 (11%)

Query: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 209
           D  ++ R   R  +LET+A VP      +LH      +     ++K    E+ NE  HL+
Sbjct: 121 DTLYRDRTYARFFVLETIARVPYFAFMSVLHMYETFGWWRRADYLKVHFAESWNEMHHLL 180

Query: 210 TFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 268
              E+     W++R L   +   ++      Y++SP+ A+     +E  A  +Y +FLK 
Sbjct: 181 IMEELGGNSWWFDRFLAQHIATFYYFMTVFLYILSPRMAYHFSECVESHAYETYDKFLKA 240

Query: 269 LDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 309
             +  ++N+PAP IA  Y+                   R P    L DV + +R DEA H
Sbjct: 241 SGE-ELKNMPAPDIAVKYYTGGDLYLFDEFQTSRTPNTRRPVIENLYDVFVNIRDDEAEH 299


>gi|449016710|dbj|BAM80112.1| plastid terminal oxidase [Cyanidioschyzon merolae strain 10D]
          Length = 430

 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 23/182 (12%)

Query: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 209
           D  F  R   R   LETVA +P      +LH      + H     +    E  NE  HL+
Sbjct: 170 DWAFTDRPIARFWFLETVARMPYFSYLSVLHLYETFNWLHLAELRRTHFAEEWNELHHLL 229

Query: 210 TFMEVA-KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 268
               +    KW +R L + +  +++    + Y++SP+ ++     LE+ A+ +Y +FL E
Sbjct: 230 IMSALGGDAKWSDRFLAYHLSIIYYWLLVVMYIVSPRLSYNFSELLEKHAVDTYEQFLTE 289

Query: 269 LDKGNIENVPAPAIATDYW---------------------RLPPNSTLKDVVLVVRADEA 307
            ++  ++ +PAPAIA  Y+                       PP  TL D  L +R DE 
Sbjct: 290 -NEHRLKALPAPAIAVRYYANEVAYTFQAFGDENGSAVETSRPPVQTLYDAFLNIRLDEE 348

Query: 308 HH 309
            H
Sbjct: 349 EH 350


>gi|297799790|ref|XP_002867779.1| hypothetical protein ARALYDRAFT_492640 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313615|gb|EFH44038.1| hypothetical protein ARALYDRAFT_492640 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 351

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 21/180 (11%)

Query: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 209
           D  ++ R   R  +LET+A VP      +LH      +     ++K    E+ NE  HL+
Sbjct: 121 DTLYRDRTYARFFVLETIARVPYFAFMSVLHMYETFGWWRRADYLKVHFAESWNEMHHLL 180

Query: 210 TFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 268
              E+     W++R L   +   ++      Y++SP+ A+     +E  A  +Y +FLK 
Sbjct: 181 IMEELGGNSWWFDRFLAQHIATFYYFMTVFLYILSPRMAYHFSECVESHAYETYDKFLKT 240

Query: 269 LDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 309
             +  ++N+PAP IA  Y+                   R P    L DV + +R DEA H
Sbjct: 241 SGE-ELKNMPAPDIAVKYYTGSDLYLFDEFQTSRAPNTRRPVIENLYDVFVNIRDDEAEH 299


>gi|363807489|ref|NP_001242139.1| uncharacterized protein LOC100813378 [Glycine max]
 gi|255635539|gb|ACU18120.1| unknown [Glycine max]
          Length = 332

 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 31/185 (16%)

Query: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW-----IKALLEEAENE 204
           D  +  R+  R  +LET+A VP      +LH      +E  G W     +K    E+ NE
Sbjct: 101 DTLYHDRHYARFFVLETIARVPYFAFMSVLH-----MYESFGWWRRADYLKVHFAESWNE 155

Query: 205 RMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYT 263
             HL+   E+     W++R L   +   ++    L Y +SP+ A+     +E  A  +Y 
Sbjct: 156 MHHLLIMEELGGNAWWFDRFLAQHIAIFYYIMTVLMYAVSPRMAYHFSECVESHAFETYD 215

Query: 264 EFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRA 304
           +F+K +    ++ +PAP +A +Y+                   R P    L DV + +R 
Sbjct: 216 KFIK-VQGDELKKMPAPEVAVNYYTGDDLYLFDEFQTSRVPNSRRPKIENLYDVFVNIRD 274

Query: 305 DEAHH 309
           DEA H
Sbjct: 275 DEAEH 279


>gi|158333679|ref|YP_001514851.1| alternative oxidase [Acaryochloris marina MBIC11017]
 gi|158303920|gb|ABW25537.1| alternative oxidase, putative [Acaryochloris marina MBIC11017]
          Length = 221

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 26/193 (13%)

Query: 137 MALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKA 196
           MA W   S++    ++  R Y  R  +LETVA VP      +LH            W+K 
Sbjct: 1   MAFWCFSSIK----IYANRPYP-RFYVLETVARVPYFSYLSVLHLYETLGLWRKADWLKI 55

Query: 197 LLEEAENERMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLE 255
              E+ NE  HL+    +   + W +R L      +++      Y++SP+ A+  +  +E
Sbjct: 56  HFAESWNELHHLLIMESLGGAEFWGDRLLAKTTALIYYWVIAALYVVSPRSAYHFMELVE 115

Query: 256 EEAIHSYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLK 296
           E A  SY +FL+  +  +++ +PAP +A  Y+                   R P   TL 
Sbjct: 116 EHAYASYDKFLQS-EAEHLKTLPAPDVAIQYYQDGDLYMFDEFQTAHQAAERRPQVDTLY 174

Query: 297 DVVLVVRADEAHH 309
           DV + +R DE  H
Sbjct: 175 DVFVAIRDDEMEH 187


>gi|356555706|ref|XP_003546171.1| PREDICTED: alternative oxidase 4, chloroplastic/chromoplastic-like
           [Glycine max]
          Length = 332

 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 31/185 (16%)

Query: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW-----IKALLEEAENE 204
           D  +  R+  R  +LET+A VP      +LH      +E  G W     +K    E+ NE
Sbjct: 101 DTLYHDRHYARFFVLETIARVPYFAFMSVLH-----MYESFGWWRRADYLKVHFAESWNE 155

Query: 205 RMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYT 263
             HL+   E+     W++R L   +   ++    L Y +SP+ A+     +E  A  +Y 
Sbjct: 156 MHHLLIMEELGGNAWWFDRFLAQHIAIFYYIMTVLMYAVSPRMAYHFSECVESHAFETYD 215

Query: 264 EFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRA 304
           +F+K +    ++ +PAP +A +Y+                   R P    L DV + +R 
Sbjct: 216 KFIK-VQGDELKKMPAPEVAVNYYTGDDLYLFDEFQTSRVPNSRRPKIENLYDVFVNIRD 274

Query: 305 DEAHH 309
           DEA H
Sbjct: 275 DEAEH 279


>gi|224116034|ref|XP_002317190.1| predicted protein [Populus trichocarpa]
 gi|222860255|gb|EEE97802.1| predicted protein [Populus trichocarpa]
          Length = 358

 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 78/185 (42%), Gaps = 31/185 (16%)

Query: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW-----IKALLEEAENE 204
           D  +  R   R  +LET+A VP      +LH      +E  G W     +K    E+ NE
Sbjct: 123 DTLYHDRDYARFFVLETIARVPYFAFISVLH-----MYESFGWWRRADYLKVHFAESWNE 177

Query: 205 RMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYT 263
             HL+   E+     W++R L   +   ++    L Y +SP+ A+     +E  A  +Y 
Sbjct: 178 MHHLLIMEELGGNSWWFDRLLAQVIATSYYFMTVLMYALSPRMAYHFSECVESHAFATYD 237

Query: 264 EFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRA 304
           +F+K     +++ +PAP +A  Y+                   R P    L DV L VR 
Sbjct: 238 KFIKA-QGDDLKKLPAPEVAVKYYTEGDLYLFDEFQTSRAPHSRRPKIENLYDVFLNVRD 296

Query: 305 DEAHH 309
           DEA H
Sbjct: 297 DEAEH 301


>gi|81296552|gb|ABB70513.1| plastid terminal oxidase [Coffea canephora]
          Length = 351

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 33/186 (17%)

Query: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAE-----NE 204
           D  +  R+  R  +LET+A VP      +LH      +E  G W +A L E       NE
Sbjct: 131 DTLYHDRHYARFFVLETIARVPYFAFMSVLHL-----YESFGWWRRADLSEVHFAESWNE 185

Query: 205 RMHLMTFMEVAKPKW-YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYT 263
             HL+   E+    W ++R L   +   ++      Y++SP+ A+     +E  A  +Y 
Sbjct: 186 MHHLLIMEELGGNSWWFDRFLAQHIAVFYYFMTVFMYMLSPRMAYHFSECVESHAFETYD 245

Query: 264 EFLKELDKG-NIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVR 303
           +F+K  D+G  ++ +PA  +A  Y+                   R P    + DV L +R
Sbjct: 246 KFIK--DQGEQLKKLPASNVAVKYYTEGNLYLFDEFQTARPPTSRRPKIENMYDVFLNIR 303

Query: 304 ADEAHH 309
            DEA H
Sbjct: 304 DDEAEH 309


>gi|108442448|gb|ABF85790.1| plastid terminal oxidase [Haematococcus pluvialis]
          Length = 441

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 28/215 (13%)

Query: 144 SLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAEN 203
           +L W  D+ + +R   +  +LETVA +P      +LH      F  +G  ++ +    E 
Sbjct: 222 ALCWVLDVVYDKRPIQKFWVLETVARIPYFAYISILHLYESLGFWRAGAELRKIHFAEEW 281

Query: 204 ERMHLMTFMEV--AKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHS 261
             +H +  ME       W++R L      +++      YL+SPK A+  +  +E  A  +
Sbjct: 282 NELHHLQIMESLGGDQAWFDRFLAEHAAVLYYWLLIAFYLVSPKVAYNFMQRVEHHAADT 341

Query: 262 YTEFLKELDKGNIENVPAPAIATDYW---------------------RLPPNSTLKDVVL 300
           Y EFL E ++  + ++P P +A +Y+                     R P  +TL DV +
Sbjct: 342 YCEFL-ESNRELLASIPPPVVALNYYRNQDLYLFDSFQTSSKASGVQRRPDCNTLLDVFI 400

Query: 301 VVRADEAHHRDVNHYASDIHYQGRQL---RESPAP 332
            VR DE  H     +A       +QL   R SP P
Sbjct: 401 NVRDDELEHV-ATMFAMQNEEIAKQLAIGRGSPGP 434


>gi|255554747|ref|XP_002518411.1| Alternative oxidase 4, chloroplast precursor, putative [Ricinus
           communis]
 gi|223542256|gb|EEF43798.1| Alternative oxidase 4, chloroplast precursor, putative [Ricinus
           communis]
          Length = 356

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 31/185 (16%)

Query: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW-----IKALLEEAENE 204
           D F+  R   R  +LET+A VP      +LH      +E  G W     +K    E+ NE
Sbjct: 118 DAFYHDRDYARFFVLETIARVPYFAFMSVLH-----MYESFGWWRRADYLKVHFAESWNE 172

Query: 205 RMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYT 263
             HL+   E+     W++R L   +  +++      Y +SP+ A+     +E  A  +Y 
Sbjct: 173 MHHLLIMEELGGNSWWFDRFLAQHIAIIYYIMTVFMYALSPRMAYHFSECVESHAYATYD 232

Query: 264 EFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRA 304
           +F+K   +  ++ +PAP +A  Y+                   R P    L DV L +R 
Sbjct: 233 KFIKAQGE-ELKKLPAPEVAVKYYTEGDLYLFDEFQTSRAPHSRRPKIDNLYDVFLNIRD 291

Query: 305 DEAHH 309
           DEA H
Sbjct: 292 DEAEH 296


>gi|9937103|gb|AAG02288.1|AF177981_1 plastid terminal oxidase [Capsicum annuum]
          Length = 357

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 35/187 (18%)

Query: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW-----IKALLEEAENE 204
           D  +  R+  R  +LET+A VP      +LH      +E  G W     +K    E+ NE
Sbjct: 123 DTLYHDRHYARFFVLETIARVPYFAFISVLHL-----YESFGWWRRADYLKVHFAESWNE 177

Query: 205 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYLEEEAIHS 261
             HL+   E+    W+    +     VF+  YF+    Y +SP+ A+     +E  A  +
Sbjct: 178 MHHLLIMEELGGNAWWFDRFLAQHIAVFY--YFMTVSMYALSPRMAYHFSECVEHHAYET 235

Query: 262 YTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVV 302
           Y +F+K+  +  ++ +PAP IA  Y+                   R P    L DV + +
Sbjct: 236 YDKFIKD-QEAELKKLPAPKIAVSYYTGGDLYLFDEFQTSREPNTRRPKIDNLYDVFMNI 294

Query: 303 RADEAHH 309
           R DEA H
Sbjct: 295 RDDEAEH 301


>gi|116783028|gb|ABK22767.1| unknown [Picea sitchensis]
          Length = 347

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 83/189 (43%), Gaps = 39/189 (20%)

Query: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW-----IKALLEEAENE 204
           D  +  R+  R  +LET+A VP      +LH      +E  G W     +K    E+ NE
Sbjct: 109 DALYSERHYARFYVLETIARVPYFAFVSVLH-----MYESFGWWRRTDYLKVHFAESWNE 163

Query: 205 RMHLMTFMEV--AKPKWYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYLEEEAI 259
             HL+  ME      +W++R   F  Q +    YF+    Y++SP+ A+     +E+ A 
Sbjct: 164 LHHLL-IMEALGGNERWFDR---FLAQHIAVFYYFMTASMYILSPRMAYHFSECVEKHAY 219

Query: 260 HSYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVL 300
            +Y EF+K L    ++ +PAP +A  Y+                   R P    L DV +
Sbjct: 220 STYDEFIK-LQGEELKKLPAPDVAVKYYTQGDLYLFDEFQTDRTPCSRRPKVENLYDVFV 278

Query: 301 VVRADEAHH 309
            +R DEA H
Sbjct: 279 NIRDDEAEH 287


>gi|157782926|gb|ABV72391.1| plastid terminal oxidase [Haematococcus pluvialis]
          Length = 441

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 24/189 (12%)

Query: 144 SLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAEN 203
           +L W  D+ + +R   +  +LETVA +P      +LH      F  +G  ++ +    E 
Sbjct: 222 ALCWVLDVVYDKRPIQKFWVLETVARIPYFAYISILHLYESLGFWRAGAELRKIHFAEEW 281

Query: 204 ERMHLMTFMEV--AKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHS 261
             +H +  ME       W++R L      +++      YL+SPK A+  +  +E  A  +
Sbjct: 282 NELHHLQIMESLGGDQAWFDRFLAEHAAVLYYWLLIAFYLVSPKVAYNFMQRVEHHAADT 341

Query: 262 YTEFLKELDKGNIENVPAPAIATDYW---------------------RLPPNSTLKDVVL 300
           Y EFL E ++  + ++P P +A +Y+                     R P  +TL DV +
Sbjct: 342 YCEFL-ESNRELLASIPPPVVALNYYRNQDLYLFDSFQTSSKASGVQRRPDCNTLLDVFI 400

Query: 301 VVRADEAHH 309
            VR DE  H
Sbjct: 401 NVRDDELEH 409


>gi|359459267|ref|ZP_09247830.1| alternative oxidase [Acaryochloris sp. CCMEE 5410]
          Length = 219

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 74/171 (43%), Gaps = 23/171 (13%)

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEV--AKP 217
           R  +LETVA +P      +LH      F     W+K    E+ NE  HL+  ME      
Sbjct: 24  RFYVLETVARIPYFSYLSVLHFYETLGFWRRADWLKVHFAESWNELHHLLI-MEALGGDK 82

Query: 218 KWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENV 277
           KW +R L   V  +++      Y++SP+ A+  +  +E+EA  +Y  FL +     +++ 
Sbjct: 83  KWIDRFLARHVALLYYWIVVALYVVSPRSAYHFMELVEQEAFQTYNSFLHD-HAEELKSQ 141

Query: 278 PAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 309
           PAP IA  Y+                   R P    L DV + +R DE  H
Sbjct: 142 PAPQIAVSYYRDGDLYMFDEFQSARVPEERRPAVDNLYDVFVNIRDDEMEH 192


>gi|158334717|ref|YP_001515889.1| alternative oxidase [Acaryochloris marina MBIC11017]
 gi|158304958|gb|ABW26575.1| alternative oxidase, putative [Acaryochloris marina MBIC11017]
          Length = 219

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 73/171 (42%), Gaps = 23/171 (13%)

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEV--AKP 217
           R  +LETVA +P      +LH      F     W+K    E+ NE  HL+  ME      
Sbjct: 24  RFYVLETVARIPYFSYLSVLHFYETLGFWRRADWLKVHFAESWNELHHLLI-MEALGGDK 82

Query: 218 KWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENV 277
           KW +R L   V  +++      Y++SP+ A+  +  +E+EA  +Y  FL +     ++  
Sbjct: 83  KWIDRFLARHVALLYYWIVVALYVVSPRSAYHFMELVEQEAFQTYNSFLHD-HAEELKGQ 141

Query: 278 PAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 309
           PAP IA  Y+                   R P    L DV + +R DE  H
Sbjct: 142 PAPQIAVSYYRDGDLYMFDEFQSARVPEERRPAVDNLYDVFVNIRDDEMEH 192


>gi|298710389|emb|CBJ25453.1| alternative oxidase, mitochondrial protein [Ectocarpus siliculosus]
          Length = 651

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 80/188 (42%), Gaps = 22/188 (11%)

Query: 143 KSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVG-GMLLHCKSLRRFEHSGGWIKALLEEA 201
           K+L W  D+ F+ R   R   LETVA +P      ML   ++L  +  +    K    E 
Sbjct: 321 KALCWFLDVVFEDRPIQRFWFLETVARMPYFSYLSMLFLYETLGWWSGAAEVRKVHFAEE 380

Query: 202 ENERMHLMTFMEVA-KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 260
            NE  HL     +    +W +R L      ++F+   LGYL+SP  A+     +E  A+ 
Sbjct: 381 YNEMQHLRIMESLGGDTRWSDRFLARHAAIIYFSVLILGYLVSPFLAYNFSELIESHAVD 440

Query: 261 SYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLV 301
           +YTEF  E ++  ++++P    A DY+                   R P    L DV   
Sbjct: 441 TYTEF-AEANEELLKSLPPTPQALDYYHGGDMYLFDEFQTSRPAFSRRPRIQNLYDVFSC 499

Query: 302 VRADEAHH 309
           +R DE  H
Sbjct: 500 IRDDELEH 507


>gi|428223604|ref|YP_007107701.1| plastoquinol oxidase immutans [Geitlerinema sp. PCC 7407]
 gi|427983505|gb|AFY64649.1| plastoquinol oxidase immutans [Geitlerinema sp. PCC 7407]
          Length = 233

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 21/188 (11%)

Query: 142 VKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEA 201
           V  L +  +  ++ R   R  +LETVA VP      +LH            W+K    E+
Sbjct: 6   VGILVFVINTLYRDRPYPRFYVLETVARVPYFAYMSVLHLYESLGLWRKADWLKVHFAES 65

Query: 202 ENERMHLMTFMEVA-KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 260
            NE  HL+    +    +W +R +       ++    L YL SP+ A+  +  +E+ A H
Sbjct: 66  WNELHHLLIMESLGGNDRWVDRFVARHAALAYYWLVVLLYLFSPRSAYHFMELVEQHAYH 125

Query: 261 SYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLV 301
           +Y  FL+E ++  ++  PAPA+A +Y+                   R P    L DV + 
Sbjct: 126 TYDVFLQE-NEAALKAEPAPAVAVNYYREGDLYMFDEFQTGSKPETRRPEIRHLYDVFVN 184

Query: 302 VRADEAHH 309
           +R DE  H
Sbjct: 185 IRDDEMEH 192


>gi|340057568|emb|CCC51914.1| conserved hypothetical protein, fragment, partial [Trypanosoma
           vivax Y486]
          Length = 205

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 51/96 (53%)

Query: 194 IKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGY 253
           ++ L+ +AE+   H    M+VA   + ER +   + G  F+ +   ++  P+ A R++GY
Sbjct: 7   VRVLMAQAESHASHTHILMQVANITYVERVVALFLFGAHFSIFSFLFVFCPRMAFRLMGY 66

Query: 254 LEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRL 289
           L EE++  +T  + ++  G I +   P  A DYW L
Sbjct: 67  LGEESVVIWTHMINDIVLGKIGDRAIPRAAFDYWSL 102


>gi|32307546|gb|AAP79178.1| quinol-to-oxygen oxidoreductase [Bigelowiella natans]
          Length = 291

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 79/187 (42%), Gaps = 33/187 (17%)

Query: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKAL------LEEAEN 203
           D  F  R   R   LETVA +P +    +LH      +E  G W +A         E  N
Sbjct: 66  DSLFDGRPLERFWFLETVARMPYLSYVTMLHL-----YESFGWWRRAAAVKRVHFAEEWN 120

Query: 204 ERMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSY 262
           E  HL+TF  +   + W  R L      V++    L +L+SP  A+     +E  A+ +Y
Sbjct: 121 EFHHLLTFEALGGDRSWATRFLAQHAAIVYYWVLVLMWLLSPTLAYNFSELIEAHAVDTY 180

Query: 263 TEFLKELDKGNIENVPAPAIATDYW--------------------RLPPNSTLKDVVLVV 302
            EF  + ++  ++ +PAP IA  YW                    R P  + L DV+  +
Sbjct: 181 GEF-ADANEELMKELPAPGIAIQYWMGGDMYLYDEFQTERRLGDERRPNITNLYDVICAI 239

Query: 303 RADEAHH 309
           R DEA H
Sbjct: 240 RDDEAEH 246


>gi|226501174|ref|NP_001150780.1| immutans protein [Zea mays]
 gi|195641770|gb|ACG40353.1| immutans protein [Zea mays]
          Length = 343

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 27/177 (15%)

Query: 156 RYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVA 215
           RY  R   LET+A VP      +LH  +   +     +IK    ++ NE  HL+   E+ 
Sbjct: 122 RYYARFFALETIARVPYFAFISVLHLYATFGWWRRADYIKVHFAQSWNEFHHLLIMEELG 181

Query: 216 KPK-WYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYLEEEAIHSYTEFLKELDK 271
               W++    F  + + F  YF+    Y++SP+ A+     +E  A  +Y EFLK L +
Sbjct: 182 GDSLWFD---CFLARFMAFFYYFMTVAMYMLSPRMAYHFSECVERHAYSTYDEFLK-LHE 237

Query: 272 GNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 309
             ++ +PAP  A +Y+                   R P    L DV + +R DEA H
Sbjct: 238 EELKRLPAPEAALNYYMNEDLYLFDEFQASRTPGSRRPKIDNLYDVFVNIREDEAEH 294


>gi|428184645|gb|EKX53500.1| plastid terminal oxidase [Guillardia theta CCMP2712]
          Length = 301

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 100/239 (41%), Gaps = 41/239 (17%)

Query: 99  KDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYG 158
           + DG+ W    + P    E    +D+       T S   AL TV  L+   D ++ ++  
Sbjct: 66  RKDGTTWGSKSY-PVSTVEEPEPLDI------VTKSIAQALVTV--LKGSLDWYYHKKSD 116

Query: 159 -CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKP 217
             R  +LETVA VP      +LH      +     WIK    EA+NE  HL+    +   
Sbjct: 117 FARFFVLETVARVPYFAYMSVLHLYESFGYHDRAHWIKIHYAEADNELHHLLIMEALGGN 176

Query: 218 K-----WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKG 272
           K     W  +   FA        YFL     P+ A+ ++  +E  A H+Y++++ E +K 
Sbjct: 177 KEFSDRWIAQHAAFAYYWFCVTFYFL----HPRGAYYVMSLIENHAYHTYSKYI-EANKS 231

Query: 273 NIENVPAPAIATDYW--------------------RLPPNSTLKDVVLVVRADEA-HHR 310
            + + P+PAIA +Y+                    R P   +L D    +R DE+ HHR
Sbjct: 232 WLASQPSPAIAKEYYEGGDLYLFDAFHTTRAEEQERRPRVQSLLDTFESIRDDESQHHR 290


>gi|224031555|gb|ACN34853.1| unknown [Zea mays]
 gi|414584889|tpg|DAA35460.1| TPA: alternative oxidase [Zea mays]
          Length = 339

 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 27/177 (15%)

Query: 156 RYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVA 215
           RY  R   LET+A VP      +LH  +   +     +IK    ++ NE  HL+   E+ 
Sbjct: 118 RYYARFFALETIARVPYFAFISVLHLYATFGWWRRADYIKVHFAQSWNEFHHLLIMEELG 177

Query: 216 KPK-WYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYLEEEAIHSYTEFLKELDK 271
               W++    F  + + F  YF+    Y++SP+ A+     +E  A  +Y EFLK L +
Sbjct: 178 GDSLWFD---CFLARFMAFFYYFMTVAMYMLSPRMAYHFSECVERHAYSTYDEFLK-LHE 233

Query: 272 GNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 309
             ++ +PAP  A +Y+                   R P    L DV + +R DEA H
Sbjct: 234 EELKRLPAPEAALNYYMNEDLYLFDEFQASRTPGSRRPKIDNLYDVFVNIREDEAEH 290


>gi|224118168|ref|XP_002331574.1| predicted protein [Populus trichocarpa]
 gi|222873798|gb|EEF10929.1| predicted protein [Populus trichocarpa]
          Length = 362

 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 78/185 (42%), Gaps = 31/185 (16%)

Query: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW-----IKALLEEAENE 204
           D  +  R   R  +LET+A VP      +LH      +E  G W     IK    E+ NE
Sbjct: 125 DALYHGRDYARFYVLETIARVPYFAFISVLHL-----YESFGWWRRSDYIKVHFAESWNE 179

Query: 205 RMHLMTFMEVA-KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYT 263
             HL+   E+     W++R L   +   ++    L Y +SP+ A+     +E  A  +Y 
Sbjct: 180 MHHLLIMEELGGNSLWFDRFLAQHMAFFYYIMTVLMYALSPRMAYHFSECVENHAFETYD 239

Query: 264 EFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRA 304
           +F+K   + ++  +PAP +A  Y+                   R P    L DV L +R 
Sbjct: 240 KFIKAQGE-DLRKMPAPEVAVKYYTEGDLYLFDEFQTSRAPHSRRPKIENLYDVFLNIRD 298

Query: 305 DEAHH 309
           DEA H
Sbjct: 299 DEAEH 303


>gi|158339790|ref|YP_001520797.1| alternative oxidase, putative [Acaryochloris marina MBIC11017]
 gi|158310031|gb|ABW31647.1| alternative oxidase, putative [Acaryochloris marina MBIC11017]
          Length = 226

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 21/170 (12%)

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK- 218
           R  +LETVA VP      +LH            W+K    E+ NE  HL+    +   + 
Sbjct: 24  RFYVLETVARVPYFSYLSVLHLYETLGLWRKADWLKIHFAESWNELHHLLIMESLGGAEF 83

Query: 219 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVP 278
           W +R L      +++    + Y++SP+ A+  +  +EE A  SY +FL+  +  +++ +P
Sbjct: 84  WGDRFLAKTTALIYYWVIAVLYVVSPRSAYHFMELVEEHAYASYDKFLQT-EAEHLKTLP 142

Query: 279 APAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 309
           AP +A  Y+                   R P   TL DV + +R DE  H
Sbjct: 143 APDVAIQYYRDGDLYMFDEFQTAHQAAERRPQVDTLYDVFVAIRDDEMEH 192


>gi|384501421|gb|EIE91912.1| hypothetical protein RO3G_16623 [Rhizopus delemar RA 99-880]
          Length = 134

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 37/58 (63%)

Query: 120 LSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGM 177
           L I    HH PTT  DK A +TVK+LR   D +F+  +  RA MLET+AAVPGM  G+
Sbjct: 70  LDIGPNNHHKPTTLGDKAAYYTVKTLRILPDTYFRGNHYMRAAMLETIAAVPGMDVGV 127


>gi|427419241|ref|ZP_18909424.1| Alternative oxidase [Leptolyngbya sp. PCC 7375]
 gi|425761954|gb|EKV02807.1| Alternative oxidase [Leptolyngbya sp. PCC 7375]
          Length = 219

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 21/177 (11%)

Query: 153 FQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFM 212
           ++ R   R  +LETVA VP      +LH      +     W+K    E+ NE  HL+   
Sbjct: 17  YKNRPYPRFYVLETVARVPYFSYLSVLHLYETLGWWRKVDWLKVHFAESWNELHHLLIME 76

Query: 213 EVA-KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDK 271
           E+    +W +R L   V  +++      Y ++P+ A+  +  +EE A  SY +FL+  ++
Sbjct: 77  ELGGSQQWIDRFLARHVALLYYWIIVAIYAVNPRAAYHFMELVEEHAYASYDKFLQS-NE 135

Query: 272 GNIENVPAPAIATDYWR-------------LPPN------STLKDVVLVVRADEAHH 309
             ++  PAP +A  Y+R              PP         L DV + +R DE  H
Sbjct: 136 AALKQEPAPQVAISYYRDGDLYMFDEFQTARPPTERRPQIKNLYDVFVAIRDDEMEH 192


>gi|359464162|ref|ZP_09252725.1| alternative oxidase, putative [Acaryochloris sp. CCMEE 5410]
          Length = 226

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 21/170 (12%)

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK- 218
           R  +LETVA VP      +LH            W+K    E+ NE  HL+    +   + 
Sbjct: 24  RFYVLETVARVPYFSYLSVLHLYETLGLWRKADWLKIHFAESWNELHHLLIMESLGGAEF 83

Query: 219 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVP 278
           W +R L      +++      Y++SP+ A+  +  +EE A  SY +FL+  +  +++ +P
Sbjct: 84  WGDRLLAKTTALIYYWVIAALYVVSPRSAYHFMELVEEHAYASYDKFLQA-EAEHLKTLP 142

Query: 279 APAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 309
           AP IA  Y+                   R P   TL DV + +R DE  H
Sbjct: 143 APDIAIQYYRDGDLYMFDEFQTAHQAAERRPQVDTLYDVFVAIRDDEMEH 192


>gi|397614777|gb|EJK63007.1| hypothetical protein THAOC_16363 [Thalassiosira oceanica]
          Length = 261

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 31/185 (16%)

Query: 150 DLFFQ--RRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW-----IKALLEEAE 202
           D FF+   R   R   LET+A VP      +LH      +E  G W     +K    E+ 
Sbjct: 57  DSFFEGEDRAYARFYALETIARVPYFSYLSVLHL-----YETLGKWRRAKYLKLHFAESW 111

Query: 203 NERMHLMTFMEVA-KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHS 261
           NE  HL+   E+    ++ +R L   +   ++    L Y+++P  A+ +   +EE A  +
Sbjct: 112 NELHHLLIMEELGGSERFLDRFLAQHIAFGYYAVVILLYVLNPVQAYNLNQDVEEHAFET 171

Query: 262 YTEFLKELDKGNIENVPAPAIATDYW-----------------RLPPNSTLKDVVLVVRA 304
           Y ++LK+ ++  ++N+PAP  A DY+                 R P    L DV + +R 
Sbjct: 172 YDKYLKD-NEEKLKNLPAPKAAIDYYVDGDMYMFDEFQTGCEFRRPKIENLYDVFVAIRD 230

Query: 305 DEAHH 309
           DEA H
Sbjct: 231 DEAAH 235


>gi|302796591|ref|XP_002980057.1| hypothetical protein SELMODRAFT_112145 [Selaginella moellendorffii]
 gi|300152284|gb|EFJ18927.1| hypothetical protein SELMODRAFT_112145 [Selaginella moellendorffii]
          Length = 279

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 24/180 (13%)

Query: 151 LFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMT 210
           L+  R Y  R  +LET+A VP      +LH      +     ++K    E+ NE  HL+ 
Sbjct: 32  LYADRDYA-RFYVLETIARVPYFAFVSVLHMYESFGWWRRADYLKVHFAESWNELHHLLV 90

Query: 211 FMEV--AKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 268
            ME      +W++R L   +   ++    L Y ISP+ A+     +E+ A  +Y +F+K 
Sbjct: 91  -MEALGGDERWFDRFLAQHIAVAYYFLTSLMYTISPRMAYHFSECVEKHAFSTYDKFIKA 149

Query: 269 LDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 309
             +  ++ +PAP +A DY+                   R P    L DV + +R DE  H
Sbjct: 150 HGE-ELKKLPAPQVAVDYYTKGDLYMFDEFQTDRLPETRRPRVDNLYDVFVNIREDEWEH 208


>gi|154346286|ref|XP_001569080.1| putative alternative oxidase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134066422|emb|CAM44214.1| putative alternative oxidase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 486

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 1/104 (0%)

Query: 187 FEHS-GGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPK 245
            EHS G  ++ L  + E+  +H      + +    ER LV  +Q + F  Y   +L  P+
Sbjct: 231 LEHSYGKELRGLFAQCESHSVHYQVLSCMTEITLAERGLVLLLQAIHFTIYLALFLFYPR 290

Query: 246 FAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRL 289
              R++ Y  EE+   +T+ + ++D G I  +  P +A  YW L
Sbjct: 291 MGFRLMAYTAEESSVVWTQMVNDVDLGKIAEMCVPQLALQYWGL 334


>gi|90399151|emb|CAJ86080.1| H0818H01.2 [Oryza sativa Indica Group]
 gi|90399243|emb|CAJ86199.1| B0811B10.18 [Oryza sativa Indica Group]
          Length = 320

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 12/166 (7%)

Query: 151 LFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMT 210
           L+  R Y  R  +LET+A VP      +LH      +     +IK    E+ NE  HL+ 
Sbjct: 109 LYRDRNYA-RFFVLETIARVPYFAFISVLHMYETFGWWRRADYIKVHFAESWNEFHHLLI 167

Query: 211 FMEV-AKPKWYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYLEEEAIHSYTEFL 266
             E+     W +R   F  +   F  YF+    Y++SP+ A+     +E  A  +Y +F+
Sbjct: 168 MEELGGNSLWVDR---FLARFAAFFYYFMTVAMYMVSPRMAYHFSECVERHAYSTYDKFI 224

Query: 267 KELDKGNIENVPAPAIATDYW---RLPPNSTLKDVVLVVRADEAHH 309
           K L +  ++ +PAP  A +Y+    L     L DV + +R DEA H
Sbjct: 225 K-LHEDELKKLPAPEAALNYYLNEDLYLFDNLYDVFVNIRDDEAEH 269


>gi|302811522|ref|XP_002987450.1| hypothetical protein SELMODRAFT_126113 [Selaginella moellendorffii]
 gi|300144856|gb|EFJ11537.1| hypothetical protein SELMODRAFT_126113 [Selaginella moellendorffii]
          Length = 280

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 24/180 (13%)

Query: 151 LFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMT 210
           L+  R Y  R  +LET+A VP      +LH      +     ++K    E+ NE  HL+ 
Sbjct: 33  LYADRDYA-RFYVLETIARVPYFAFVSVLHMYESFGWWRRADYLKVHFAESWNELHHLLV 91

Query: 211 FMEV--AKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 268
            ME      +W++R L   +   ++    L Y ISP+ A+     +E+ A  +Y +F+K 
Sbjct: 92  -MEALGGDERWFDRFLAQHIAVAYYFLTSLMYTISPRMAYHFSECVEKHAFSTYDKFIKA 150

Query: 269 LDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 309
             +  ++ +PAP +A DY+                   R P    L DV + +R DE  H
Sbjct: 151 HGE-ELKKLPAPQVAVDYYTKGDLYMFDEFQTDRLPETRRPRVDNLYDVFVNIREDEWEH 209


>gi|378706340|gb|AFC35141.1| hypothetical protein OtV6_233 [Ostreococcus tauri virus RT-2011]
          Length = 201

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 79/173 (45%), Gaps = 10/173 (5%)

Query: 141 TVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEE 200
            VKS     D  ++ R   R  +LETVA VP      +LH            +++   E+
Sbjct: 21  VVKSAVKVIDKVYKDRDYARFYVLETVARVPYFSFVSVLHLYETLGLWRKADYLETHFEQ 80

Query: 201 AENERMHLMTFMEVA-KPKWYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYLEE 256
             NE  HL+   ++    ++ +R   F  Q   F  Y+L    YL SP+ A+ +   +EE
Sbjct: 81  TMNEYHHLLIMEQLGGDERFIDR---FFAQHTAFAYYWLTCLIYLASPRMAYNLSEQIEE 137

Query: 257 EAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHH 309
            A H+Y EFLK+  +  +   P P +A +Y+    N  L DV   VR DE  H
Sbjct: 138 HAYHTYDEFLKKHGENLLLERP-PIVAANYYGDVNN--LYDVFTRVRDDEGDH 187


>gi|359359155|gb|AEV41060.1| putative immutans protein [Oryza minuta]
          Length = 346

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 28/182 (15%)

Query: 151 LFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMT 210
           L+  R Y  R  +LET+A VP      +LH      +     +IK    E+ NE  HL+ 
Sbjct: 119 LYRDRNYA-RFFVLETIARVPYFAFISVLHMYETFGWWRRADYIKVHFAESWNEFHHLLI 177

Query: 211 FMEV-AKPKWYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYLEEEAIHSYTEFL 266
             E+     W +R   F  +   F  YF+    Y++SP+ A+     +E  A  +Y +F+
Sbjct: 178 MEELGGNSLWVDR---FLARFAAFFYYFMTVAMYMVSPRMAYHFSECVERHAYSTYDKFI 234

Query: 267 KELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEA 307
           K L + +++ +PAP  A +Y+                   R P    L DV + +R DEA
Sbjct: 235 K-LHEEDLKKLPAPEAALNYYLNEDLYLFDEFQTARVPCSRRPKIDNLYDVFVNIRDDEA 293

Query: 308 HH 309
            H
Sbjct: 294 EH 295


>gi|449016709|dbj|BAM80111.1| plastid terminal oxidase [Cyanidioschyzon merolae strain 10D]
          Length = 467

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 77/181 (42%), Gaps = 22/181 (12%)

Query: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 209
           ++ F+ R   R   LE VA VP      +LH        H     +A   E  NE  HL+
Sbjct: 159 EMLFRDRPIERFWFLEMVARVPYFSFLSVLHLYESLDLAHLTELRRAHFIEEWNEMHHLL 218

Query: 210 TFMEVA-KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 268
               +    +W +R L + V  V++ A  L Y+I+P  A+     LE+ A  +Y  F+ E
Sbjct: 219 IMQALGGDGRWLDRFLAYHVSLVYYWALVLLYMIAPAVAYNFSELLEKHAYDTYAVFI-E 277

Query: 269 LDKGNIENVPAPAIATDYWRL--------------------PPNSTLKDVVLVVRADEAH 308
            ++  +  +PAP++A  Y+                      PP +TL D  + +R DE  
Sbjct: 278 QNETLLRTLPAPSVARAYYESGERFRFRADTINAETHACEGPPVATLFDAFVNIRDDEGE 337

Query: 309 H 309
           H
Sbjct: 338 H 338


>gi|359359202|gb|AEV41106.1| putative immutans protein [Oryza officinalis]
          Length = 347

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 28/182 (15%)

Query: 151 LFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMT 210
           L+  R Y  R  +LET+A VP      +LH      +     +IK    E+ NE  HL+ 
Sbjct: 120 LYRDRNYA-RFFVLETIARVPYFAFISVLHMYETFGWWRRADYIKVHFAESWNEFHHLLI 178

Query: 211 FMEV-AKPKWYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYLEEEAIHSYTEFL 266
             E+     W +R   F  +   F  YF+    Y++SP+ A+     +E  A  +Y +F+
Sbjct: 179 MEELGGNSLWVDR---FLARFAAFFYYFMTVAMYMVSPRMAYHFSECVERHAYSTYDKFI 235

Query: 267 KELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEA 307
           K L + +++ +PAP  A +Y+                   R P    L DV + +R DEA
Sbjct: 236 K-LHEEDLKKLPAPEAALNYYLNDDLYLFDEFQTARVPCSRRPKIDNLYDVFVNIRDDEA 294

Query: 308 HH 309
            H
Sbjct: 295 EH 296


>gi|440684015|ref|YP_007158810.1| plastoquinol oxidase immutans [Anabaena cylindrica PCC 7122]
 gi|428681134|gb|AFZ59900.1| plastoquinol oxidase immutans [Anabaena cylindrica PCC 7122]
          Length = 228

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 21/170 (12%)

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK- 218
           R  +LETVA VP      +LH      F     W+K    E+ NE  HL+    +   + 
Sbjct: 24  RFYVLETVARVPYFSYLSVLHLYETLGFWRKADWLKVHFAESWNELHHLLIMESLGGSQF 83

Query: 219 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVP 278
           W +R L      +++      Y++S   A+  +  +E  A  SY +FL E  +  ++  P
Sbjct: 84  WGDRILARTTALIYYWIIVALYIVSSSSAYNFMELVENHAYDSYQKFLTE-HEAELKLQP 142

Query: 279 APAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 309
           APA+A +Y+                   R P    L DV + +R DE  H
Sbjct: 143 APAVAINYYRDGDLYMFDEFQTANSPETRRPKVDNLYDVFVAIRDDEMEH 192


>gi|9837152|gb|AAG00450.1|AF274001_1 oxidase [Triticum aestivum]
          Length = 224

 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 85/198 (42%), Gaps = 29/198 (14%)

Query: 133 FSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGG 192
           F     ++   ++ +  D+ ++ R   R  +LET+A VP      +LH      +     
Sbjct: 26  FEQSFNVFLTDTVIFILDILYRDRDYARFFVLETIARVPYFAFISVLHLYETFGWSRRAD 85

Query: 193 WIKALLEEAENERMHLMTFMEV--AKPKWYERALVFAVQGVFFNAYFLG---YLISPKFA 247
            IK    E+ NE  HL+  ME       W +R L  A    FF  YF+    Y++SP+ A
Sbjct: 86  NIKVHFAESMNEFHHLLI-MEALGGNSVWLDRFL--ARFSAFF-YYFVTVGMYMLSPRMA 141

Query: 248 HRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYW-------------------R 288
           +     +E  A  +Y +FLK L+   ++ +PAP +A +Y+                   R
Sbjct: 142 YHFSECVERHAYSTYDKFLK-LNGEELKKLPAPEVAVNYYMNEDLYMFDEFQTSRAPNSR 200

Query: 289 LPPNSTLKDVVLVVRADE 306
            P    L DV + VR DE
Sbjct: 201 RPKVDNLYDVFVNVRDDE 218


>gi|115461198|ref|NP_001054199.1| Os04g0668900 [Oryza sativa Japonica Group]
 gi|21105122|gb|AAC35554.3| oxidase [Oryza sativa Japonica Group]
 gi|32488386|emb|CAE02811.1| OSJNBa0043A12.16 [Oryza sativa Japonica Group]
 gi|113565770|dbj|BAF16113.1| Os04g0668900 [Oryza sativa Japonica Group]
 gi|215695465|dbj|BAG90652.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218195789|gb|EEC78216.1| hypothetical protein OsI_17850 [Oryza sativa Indica Group]
 gi|222629739|gb|EEE61871.1| hypothetical protein OsJ_16557 [Oryza sativa Japonica Group]
          Length = 336

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 79/182 (43%), Gaps = 28/182 (15%)

Query: 151 LFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMT 210
           L+  R Y  R  +LET+A VP      +LH      +     +IK    E+ NE  HL+ 
Sbjct: 109 LYRDRNYA-RFFVLETIARVPYFAFISVLHMYETFGWWRRADYIKVHFAESWNEFHHLLI 167

Query: 211 FMEV-AKPKWYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYLEEEAIHSYTEFL 266
             E+     W +R   F  +   F  YF+    Y++SP+ A+     +E  A  +Y +F+
Sbjct: 168 MEELGGNSLWVDR---FLARFAAFFYYFMTVAMYMVSPRMAYHFSECVERHAYSTYDKFI 224

Query: 267 KELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEA 307
           K L +  ++ +PAP  A +Y+                   R P    L DV + +R DEA
Sbjct: 225 K-LHEDELKKLPAPEAALNYYLNEDLYLFDEFQTARVPCSRRPKIDNLYDVFVNIRDDEA 283

Query: 308 HH 309
            H
Sbjct: 284 EH 285


>gi|359496713|ref|XP_002271078.2| PREDICTED: alternative oxidase 4, chloroplastic/chromoplastic-like,
           partial [Vitis vinifera]
          Length = 281

 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 12/161 (7%)

Query: 133 FSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGG 192
           F     ++  +S+    D  +  R   R  +LET+A VP      +LH      +E  G 
Sbjct: 103 FEQSFNVFLTESVIKILDTLYHDRDYARFFVLETIARVPYFAFMSVLHM-----YESFGW 157

Query: 193 W-----IKALLEEAENERMHLMTFMEV-AKPKWYERALVFAVQGVFFNAYFLGYLISPKF 246
           W     +K    E+ NE  HL+   E+     W++R L   +   ++      Y++SP+ 
Sbjct: 158 WRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAIFYYFMTVFMYVLSPRM 217

Query: 247 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYW 287
           A+ +   +E  A  +Y +F+K      ++N+PAP IA  Y+
Sbjct: 218 AYHLSECVESHAYETYDKFIKS-QGDELKNLPAPEIAVRYY 257


>gi|297745709|emb|CBI41031.3| unnamed protein product [Vitis vinifera]
          Length = 294

 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 12/161 (7%)

Query: 133 FSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGG 192
           F     ++  +S+    D  +  R   R  +LET+A VP      +LH      +E  G 
Sbjct: 103 FEQSFNVFLTESVIKILDTLYHDRDYARFFVLETIARVPYFAFMSVLHM-----YESFGW 157

Query: 193 W-----IKALLEEAENERMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKF 246
           W     +K    E+ NE  HL+   E+     W++R L   +   ++      Y++SP+ 
Sbjct: 158 WRRADYLKVHFAESWNEMHHLLIMEELGGNAWWFDRFLAQHIAIFYYFMTVFMYVLSPRM 217

Query: 247 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYW 287
           A+ +   +E  A  +Y +F+K      ++N+PAP IA  Y+
Sbjct: 218 AYHLSECVESHAYETYDKFIKS-QGDELKNLPAPEIAVRYY 257


>gi|359359056|gb|AEV40963.1| putative immutans protein [Oryza punctata]
 gi|359359107|gb|AEV41013.1| putative immutans protein [Oryza minuta]
          Length = 338

 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 79/182 (43%), Gaps = 28/182 (15%)

Query: 151 LFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMT 210
           L+  R Y  R  +LET+A VP      +LH      +     +IK    E+ NE  HL+ 
Sbjct: 111 LYRDRNYA-RFFVLETIARVPYFAFISVLHMYETFGWWRRADYIKVHFAESWNEFHHLLI 169

Query: 211 FMEV-AKPKWYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYLEEEAIHSYTEFL 266
             E+     W +R   F  +   F  YF+    Y++SP+ A+     +E  A  +Y +F+
Sbjct: 170 MEELGGNSLWVDR---FLARFAAFFYYFMTVAMYMVSPRMAYHFSECVERHAYSTYDKFI 226

Query: 267 KELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEA 307
           K L +  ++ +PAP  A +Y+                   R P    L DV + +R DEA
Sbjct: 227 K-LHEEELKKLPAPEAALNYYLNEDLYLFDEFQTARVPCSRRPKIDNLYDVFVNIRDDEA 285

Query: 308 HH 309
            H
Sbjct: 286 EH 287


>gi|308809309|ref|XP_003081964.1| unnamed protein product [Ostreococcus tauri]
          Length = 260

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 20/179 (11%)

Query: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 209
           D  +  R   R   LETVA VP      +LH      +     ++K    E  NE  HL+
Sbjct: 7   DYLYAGRSYARFHALETVARVPYFSFMSVLHLYETFGWWRRADYLKVHFAETMNEYHHLL 66

Query: 210 TFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 268
               +   + W +R     V   ++      YL+SP++A+ ++  +E  A  +Y +FL E
Sbjct: 67  IMESLGGAELWRDRFFAQHVAVAYYWICVAQYLVSPRWAYNLLEQVESHAYATYDKFL-E 125

Query: 269 LDKGNIENVPAPAIATDYW------------------RLPPNSTLKDVVLVVRADEAHH 309
            ++  ++  PAP +A  Y+                  R P    L DV + VR DEA H
Sbjct: 126 ANEEVLKKTPAPRVAVAYYTKGDLYLFDEFQTGEKGARRPKIDNLYDVFVNVRNDEAEH 184


>gi|116060431|emb|CAL55767.1| unnamed protein product, partial [Ostreococcus tauri]
          Length = 267

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 20/179 (11%)

Query: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 209
           D  +  R   R   LETVA VP      +LH      +     ++K    E  NE  HL+
Sbjct: 14  DYLYAGRSYARFHALETVARVPYFSFMSVLHLYETFGWWRRADYLKVHFAETMNEYHHLL 73

Query: 210 TFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 268
               +   + W +R     V   ++      YL+SP++A+ ++  +E  A  +Y +FL E
Sbjct: 74  IMESLGGAELWRDRFFAQHVAVAYYWICVAQYLVSPRWAYNLLEQVESHAYATYDKFL-E 132

Query: 269 LDKGNIENVPAPAIATDYW------------------RLPPNSTLKDVVLVVRADEAHH 309
            ++  ++  PAP +A  Y+                  R P    L DV + VR DEA H
Sbjct: 133 ANEEVLKKTPAPRVAVAYYTKGDLYLFDEFQTGEKGARRPKIDNLYDVFVNVRNDEAEH 191


>gi|302819116|ref|XP_002991229.1| hypothetical protein SELMODRAFT_429569 [Selaginella moellendorffii]
 gi|300140940|gb|EFJ07657.1| hypothetical protein SELMODRAFT_429569 [Selaginella moellendorffii]
          Length = 232

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 42/68 (61%), Gaps = 4/68 (5%)

Query: 89  YWGVEAPKVNKDDGSEWKWNCFRPWE--AYEADLSIDLKKHHAPTTFSDKMALWTVKSLR 146
           YWGV   K N D GS+  WN F P E    EA++SID+ KH  P  FSD+ A   V +LR
Sbjct: 160 YWGVCFGKPN-DVGSK-IWNSFWPSENRIIEAEVSIDINKHRNPENFSDQFARLAVMALR 217

Query: 147 WPTDLFFQ 154
           +PTDL F+
Sbjct: 218 FPTDLLFR 225


>gi|428161219|gb|ACA53387.2| plastid terminal oxidase [Daucus carota]
          Length = 365

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 79/188 (42%), Gaps = 37/188 (19%)

Query: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW-----IKALLEEAENE 204
           D  +  R   R  +LET+A VP      +LH      +E  G W     +K    E+ NE
Sbjct: 131 DTLYHDRDYARFFVLETIARVPYFAFMSVLH-----MYESFGWWRRADYLKVHFAESWNE 185

Query: 205 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYLEEEAIHS 261
             HL+   E+    W+    +     VF+  YF+    YL+SP+ A+     +E  A  +
Sbjct: 186 MHHLLIMEELGGNAWWFDRFLSQHIAVFY--YFMAAFMYLLSPRMAYHFSECVEHHAFET 243

Query: 262 YTEFLKELDKG-NIENVPAPAIATDYW-------------------RLPPNSTLKDVVLV 301
           Y +F+    KG +++ +PA  +A  Y+                   R P    L DV + 
Sbjct: 244 YDKFINA--KGEDLKKLPASKVAIKYYTEGDMYLFDEFQTSRAPNTRRPVIDNLYDVFVN 301

Query: 302 VRADEAHH 309
           +R DEA H
Sbjct: 302 IRDDEAEH 309


>gi|1478347|gb|AAB36073.1| Aox3 [Glycine max]
          Length = 40

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/37 (59%), Positives = 29/37 (78%)

Query: 209 MTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPK 245
           MT +E+ KP W+ER L+   QGVFFNA+F+ YL+SPK
Sbjct: 1   MTMVELVKPSWHERLLILTAQGVFFNAFFVFYLLSPK 37


>gi|242077584|ref|XP_002448728.1| hypothetical protein SORBIDRAFT_06g032180 [Sorghum bicolor]
 gi|241939911|gb|EES13056.1| hypothetical protein SORBIDRAFT_06g032180 [Sorghum bicolor]
          Length = 351

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 27/194 (13%)

Query: 139 LWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALL 198
           ++  +S+    D  ++ R   R  +LET+A VP      +LH      +     +IK   
Sbjct: 111 IFATESMIMILDGVYRDRNYARFFVLETIARVPYFGFISVLHLYETFGWWRRADYIKVHF 170

Query: 199 EEAENERMHLMTFMEVA-KPKWYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYL 254
            ++ NE  HL+   E+     W +R   F  + + F  YF+    Y++SP+ A+     +
Sbjct: 171 AQSWNEFHHLLIMEELGGNALWIDR---FLARFMAFFYYFMTVAMYMLSPRMAYHFSECV 227

Query: 255 EEEAIHSYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTL 295
           E  A  +Y +FLK L +  ++ +PAP  A +Y+                   R P    L
Sbjct: 228 ERHAYSTYDKFLK-LHEEELKRLPAPEAALNYYLNEDLYLFDEFQTAGVPCSRRPKIDNL 286

Query: 296 KDVVLVVRADEAHH 309
            DV + VR DEA H
Sbjct: 287 YDVFVNVRDDEAEH 300


>gi|302830420|ref|XP_002946776.1| hypothetical protein VOLCADRAFT_79367 [Volvox carteri f.
           nagariensis]
 gi|300267820|gb|EFJ52002.1| hypothetical protein VOLCADRAFT_79367 [Volvox carteri f.
           nagariensis]
          Length = 437

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 90/219 (41%), Gaps = 27/219 (12%)

Query: 117 EADLSIDLKKHHAPTTFSD-KMALWT---VKSLRWPTDLFFQRRYGCRAMMLETVAAVPG 172
           +AD  I +++    T   D +  LW      +L W  D+ +  +   +  +LETVA +P 
Sbjct: 168 DADDVIAVERERIATGGGDMESPLWVKAPFYALCWLLDIMYDNKPIEKFWVLETVARIPY 227

Query: 173 MVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEV--AKPKWYERALVFAVQG 230
                +LH      F  +G  ++ +    E   MH +  ME       W +R +      
Sbjct: 228 FAYISILHLYESLGFWRAGAELRKIHFAEEWNEMHHLQIMESLGGDRAWMDRFIAEHSAV 287

Query: 231 VFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYW--- 287
            ++    L YL+SP+ A+  +  +E  A  +YT FL+  +   +E++P P +A  Y+   
Sbjct: 288 FYYWVLILFYLVSPRMAYNFMQRVELHAADTYTAFLQR-NAAVLESIPPPMVALQYYYSE 346

Query: 288 -----------------RLPPNSTLKDVVLVVRADEAHH 309
                            R P   TL DV   +R DE  H
Sbjct: 347 DLYLFDEFQTASRGAPPRRPRCETLLDVFKNIRDDEMEH 385


>gi|307109615|gb|EFN57853.1| hypothetical protein CHLNCDRAFT_143310 [Chlorella variabilis]
          Length = 289

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 17/185 (9%)

Query: 144 SLRWPTDLFFQRRYGCRAMMLETVAAVPGMVG------GMLLHCKSLRRFEHSGGWIKAL 197
           +L  P D   +R  G R +   +V  V G+ G       +  H +S+   +   GW+   
Sbjct: 85  TLGAPADRLTERSLGKRILCFTSVGTVSGLAGKPWGRGAVFNHVRSILFNKPDNGWVHTA 144

Query: 198 LEEAENERMHLMTFMEV----AKPKWYERA--LVFAVQGVFFNAYFLGYLISPKFAHRMV 251
              AE  R H           A+P  + R   L+F  + V F      Y   P  A+   
Sbjct: 145 AANAECVRAHAGIVANTTWTPAQPPLWARLFHLMFQARVVMFLQILPVYFFLPSAAYAYD 204

Query: 252 GYLEEEAIHSYTEFLKELDKGNIE---NVPAPAIATDYWRLPPNSTLKDVVLVVRADEAH 308
            +  EE +  Y++ +  +  G  +   +  AP +   Y+ LP  + L+D +L +RADEA 
Sbjct: 205 AFRAEEQV--YSQAISLIGSGRFKTWKSTRAPGLGVSYYALPEGAMLRDALLRMRADEAC 262

Query: 309 HRDVN 313
              +N
Sbjct: 263 IHQLN 267


>gi|224009886|ref|XP_002293901.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220970573|gb|EED88910.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 292

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 86/199 (43%), Gaps = 29/199 (14%)

Query: 134 SDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW 193
           +++ A+  +K   + T    + R   R   LET+A VP      +LH      +E  G W
Sbjct: 73  ANRFAIGFLKGTIFDTFFVGEDRAYARFYALETIARVPYFSYLSVLHL-----YETLGKW 127

Query: 194 -----IKALLEEAENERMHLMTFMEVA-KPKWYERALVFAVQGVFFNAYFLGYLISPKFA 247
                +K    E+ NE  HL+   E+    ++++R L       +F      YLI+P  A
Sbjct: 128 RRVKYLKLHFAESWNEMHHLLIMEELGGSERFFDRFLAQHCAFGYFLIVITLYLINPVQA 187

Query: 248 HRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYW-----------------RLP 290
           + +   +EE A  +Y  FLKE +   ++  PAP +A +Y+                 R P
Sbjct: 188 YNLNQDVEEHAFATYDTFLKE-NAEMLKTKPAPKVAIEYYRHGDMYMFDEFQTECELRRP 246

Query: 291 PNSTLKDVVLVVRADEAHH 309
             + L DV + +R DE  H
Sbjct: 247 EINNLYDVFVAIRDDEMAH 265


>gi|414584888|tpg|DAA35459.1| TPA: ethylene-responsive transcription factor 3 [Zea mays]
          Length = 547

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 13/158 (8%)

Query: 156 RYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVA 215
           RY  R   LET+A VP      +LH  +   +     +IK    ++ NE  HL+   E+ 
Sbjct: 355 RYYARFFALETIARVPYFAFISVLHLYATFGWWRRADYIKVHFAQSWNEFHHLLIMEELG 414

Query: 216 KPK-WYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYLEEEAIHSYTEFLKELDK 271
               W++    F  + + F  YF+    Y++SP+ A+     +E  A  +Y EFLK L +
Sbjct: 415 GDSLWFD---CFLARFMAFFYYFMTVAMYMLSPRMAYHFSECVERHAYSTYDEFLK-LHE 470

Query: 272 GNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHH 309
              +    P       R P    L DV + +R DEA H
Sbjct: 471 DEFQASRTPGS-----RRPKIDNLYDVFVNIREDEAEH 503


>gi|357166646|ref|XP_003580780.1| PREDICTED: alternative oxidase 4, chloroplastic/chromoplastic-like
           [Brachypodium distachyon]
          Length = 368

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 26/181 (14%)

Query: 151 LFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMT 210
           L+  R Y  R  +LET+A VP      +LH      +     +IK    E+ NE  HL+ 
Sbjct: 140 LYGDRNYA-RFFVLETIARVPYFAFISVLHMYETFGWWRRADYIKVHFAESMNEFHHLLI 198

Query: 211 FMEVAKPKWYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYLEEEAIHSYTEFLK 267
             E+          +      F+  YF+    Y++SP+ A+     +E  A  +Y +FLK
Sbjct: 199 MEELGGNSELVDRFLARFSAFFY--YFMTVAMYMLSPRMAYHFSECVERHAYSTYDKFLK 256

Query: 268 ELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAH 308
            L+   ++ +PAP  A +Y+                   R P    L DV + +R DEA 
Sbjct: 257 -LNGEELKKLPAPEAAINYYMNEDLYLFDEFQTSRVPCSRRPKVDNLYDVFVNIRDDEAE 315

Query: 309 H 309
           H
Sbjct: 316 H 316


>gi|428315519|ref|YP_007113401.1| plastoquinol oxidase immutans [Oscillatoria nigro-viridis PCC 7112]
 gi|428239199|gb|AFZ04985.1| plastoquinol oxidase immutans [Oscillatoria nigro-viridis PCC 7112]
          Length = 237

 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 77/188 (40%), Gaps = 21/188 (11%)

Query: 142 VKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEA 201
           V  L +  ++ +  R   R  +LETVA VP      +LH      +     W+K    E+
Sbjct: 6   VGILVFAINVVYADRPYPRFYVLETVARVPYFSYLSVLHLYETLGWWRKADWLKIHFSES 65

Query: 202 ENERMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 260
            NE  HL+    +     W +R L  A   +++    L Y++S K A+  +  +E  A  
Sbjct: 66  WNELHHLLIMESLGGSAFWGDRLLARATALIYYWIIILVYMVSSKSAYNFMELVEGHAYA 125

Query: 261 SYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLV 301
           SY +FL   +   ++  PAP +A  Y+                   R P    L DV + 
Sbjct: 126 SYDKFLNA-EAEALKQQPAPDVALQYYRDGDLYMFDEFQTSSANVFRRPKIDNLYDVFVA 184

Query: 302 VRADEAHH 309
           +R DE  H
Sbjct: 185 IRDDEMEH 192


>gi|108442436|gb|ABF85789.1| plastid terminal oxidase [Haematococcus pluvialis]
          Length = 447

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 79/196 (40%), Gaps = 33/196 (16%)

Query: 149 TDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLE-------EA 201
            D+ F+ R   R   LETVA +P       LH         S GW +A  E       E 
Sbjct: 242 IDVLFENRPIQRFWFLETVARMPYFSYISCLH------LYESLGWWRAAAELRKLHFAEE 295

Query: 202 ENERMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 260
            NE  HL     +   + W++R + +    V++    L Y+ SP  A+     LE  A+ 
Sbjct: 296 WNELHHLQIMESLGGDQLWFDRFVGYHSAIVYYWVLVLLYVASPSLAYTFSELLEAHAVD 355

Query: 261 SYTEFLKELDKGNIENVPAPAIATDYWRL------------------PPNSTLKDVVLVV 302
           +Y EFL + ++  ++++  P +A +Y+R                   PP   L DV   +
Sbjct: 356 TYGEFL-DANEPLLKSLAPPLVAAEYYRSCDLYLFDEFQTSNVTPRNPPLENLYDVFCAI 414

Query: 303 RADEAHHRDVNHYASD 318
           + DE  H    H   D
Sbjct: 415 KEDEGEHVKTMHACVD 430


>gi|157782928|gb|ABV72392.1| plastid terminal oxidase [Haematococcus pluvialis]
          Length = 447

 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 79/196 (40%), Gaps = 33/196 (16%)

Query: 149 TDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLE-------EA 201
            D+ F+ R   R   LETVA +P       LH         S GW +A  E       E 
Sbjct: 242 IDVLFENRPIQRFWFLETVARMPYFSYISCLH------LYESLGWWRAAAELRKIHFAEE 295

Query: 202 ENERMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 260
            NE  HL     +   + W++R + +    V++    L Y+ SP  A+     LE  A+ 
Sbjct: 296 WNELHHLQIMESLGGDQLWFDRFVGYHSAIVYYWVLVLLYVASPSLAYTFSELLEAHAVD 355

Query: 261 SYTEFLKELDKGNIENVPAPAIATDYWRL------------------PPNSTLKDVVLVV 302
           +Y EFL + ++  ++++  P +A +Y+R                   PP   L DV   +
Sbjct: 356 TYGEFL-DANEPLLKSLAPPLVAAEYYRSCDLYLFDEFQTSNVTPRNPPLENLYDVFCAI 414

Query: 303 RADEAHHRDVNHYASD 318
           + DE  H    H   D
Sbjct: 415 KEDEGEHVKTMHACVD 430


>gi|428319159|ref|YP_007117041.1| alternative oxidase [Oscillatoria nigro-viridis PCC 7112]
 gi|428242839|gb|AFZ08625.1| alternative oxidase [Oscillatoria nigro-viridis PCC 7112]
          Length = 229

 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 77/184 (41%), Gaps = 27/184 (14%)

Query: 149 TDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHL 208
            D+ +  R   R  MLET+A VP      +LH      +      +K    E  NE  HL
Sbjct: 16  VDVVYGNRSYPRFYMLETIARVPYFSYLSVLHLYETLGYWRKADLLKLHFAETWNELHHL 75

Query: 209 MTFMEVAKPK-WYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYLEEEAIHSYTE 264
           +    +   + W +R   F  Q V F  Y++    Y++ P +A+ ++  +E  A H+Y E
Sbjct: 76  LIMESLGGDRLWIDR---FIAQHVAFAYYWVVVPLYMLFPSYAYYLMELIEGHAYHTYDE 132

Query: 265 FLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRAD 305
           +LK  +   ++  PAP +A +++                   R P    L DV   +R D
Sbjct: 133 YLKTYE-AQLKAQPAPQVAINFYRDGDLYMFDEVQTALSHEFRRPKVDNLYDVFANIRDD 191

Query: 306 EAHH 309
           E  H
Sbjct: 192 EDEH 195


>gi|303284211|ref|XP_003061396.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456726|gb|EEH54026.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 222

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 76/187 (40%), Gaps = 27/187 (14%)

Query: 149 TDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHL 208
            D  ++ R   R   LETVA VP      +LH      F     ++K    +  NE  HL
Sbjct: 20  IDKLYEGRDYSRFYALETVARVPYFSFLSVLHLYETLGFWRRADYLKVHFAQTMNEFHHL 79

Query: 209 MTFMEVA-KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLK 267
           +    +    K+ +R     +   ++    L YL+SP+ A+ +   +EE A H+Y  FL+
Sbjct: 80  LIMESLGGDDKFRDRFFAQHMAVGYYGIACLMYLVSPRMAYNLSEQVEEHAYHTYDVFLR 139

Query: 268 ELDKGNIENVPAPAIATDYW-------------------------RLPPNSTLKDVVLVV 302
           E ++  ++    P IA  Y+                         R P   +L DV + V
Sbjct: 140 E-NEERLKRQSPPPIAVHYYQEGDLFLFDEFQTGAVTGVARGADKRRPRIDSLYDVFVNV 198

Query: 303 RADEAHH 309
           R DEA H
Sbjct: 199 RNDEAEH 205


>gi|75907278|ref|YP_321574.1| oxidase [Anabaena variabilis ATCC 29413]
 gi|75701003|gb|ABA20679.1| plastoquinol oxidase immutans [Anabaena variabilis ATCC 29413]
          Length = 228

 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 21/170 (12%)

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK- 218
           R  +LETVA VP      +LH      +     W+K    E+ NE  HL+    +     
Sbjct: 24  RFYVLETVARVPYFSYLSVLHLYETLGWWRKADWLKVHFAESWNELHHLLIMESLGGAGF 83

Query: 219 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVP 278
           W +R L      +++      Y +SP+ A+  +  +E+ A  SY +FL    +  ++  P
Sbjct: 84  WGDRFLAKTAALIYYWIIIAVYFVSPRSAYNFMELVEQHAYSSYDKFLTT-HEAELKTQP 142

Query: 279 APAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 309
           AP +A  Y+                   R P    L DV + +R DE  H
Sbjct: 143 APEVAKIYYRDGDLYMFDEFQTAHSPSERRPNIDNLYDVFVAIRDDEMEH 192


>gi|238013864|gb|ACR37967.1| unknown [Zea mays]
 gi|414584890|tpg|DAA35461.1| TPA: alternative oxidase [Zea mays]
          Length = 341

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 27/180 (15%)

Query: 153 FQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFM 212
           ++ R   R  +LET+A VP      +LH      +     ++K    ++ NE  HL+   
Sbjct: 117 YRDRNYARFFVLETIARVPYFAFISVLHMYETFGWWRRADYLKVHFAQSLNEFHHLLIME 176

Query: 213 EVA-KPKWYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYLEEEAIHSYTEFLKE 268
           E+     W +    F  + + F  YF+    Y++SP+ A+     +E  A  +Y +FLK 
Sbjct: 177 ELGGNAIWID---CFLARFMAFFYYFMTVAMYMLSPRMAYHFSECVERHAYSTYDKFLK- 232

Query: 269 LDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 309
           L +  ++ +PAP  A +Y+                   R P    L DV + +R DEA H
Sbjct: 233 LHEEELKTLPAPEAALNYYLNEDLYLFDEFQTTRIPCSRRPKIDNLYDVFVNIRDDEAEH 292


>gi|17229588|ref|NP_486136.1| plastoquinol terminal oxidase [Nostoc sp. PCC 7120]
 gi|17131187|dbj|BAB73795.1| oxidase [Nostoc sp. PCC 7120]
          Length = 230

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 68/170 (40%), Gaps = 21/170 (12%)

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPK- 218
           R  +LETVA VP      +LH      +     W+K    E+ NE  HL+    +     
Sbjct: 24  RFYVLETVARVPYFSYLSVLHLYETLGWWRKADWLKVHFAESWNELHHLLIMESLGGAGF 83

Query: 219 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVP 278
           W +R L      +++      Y +SP  A+  +  +E+ A  SY +FL    +  ++  P
Sbjct: 84  WGDRFLAKTAALIYYWIIIAVYFVSPHSAYNFMEQVEQHAYSSYDKFLTT-HEAELKTQP 142

Query: 279 APAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 309
           AP +A  Y+                   R P    L DV + +R DE  H
Sbjct: 143 APEVAKTYYRDGDLYMFDEFQTAHSPSERRPNIDNLYDVFVAIRDDEMEH 192


>gi|302837648|ref|XP_002950383.1| hypothetical protein VOLCADRAFT_90709 [Volvox carteri f.
           nagariensis]
 gi|300264388|gb|EFJ48584.1| hypothetical protein VOLCADRAFT_90709 [Volvox carteri f.
           nagariensis]
          Length = 468

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 77/201 (38%), Gaps = 35/201 (17%)

Query: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLE-------EAE 202
           D+ F  R   R   LETVA +P      +LH         S GW +A  E       E  
Sbjct: 260 DVLFNNRPIQRFWFLETVARMPYFSYISVLH------LYESFGWWRAGAELRKIHFAEEW 313

Query: 203 NERMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHS 261
           NE  HL     +   K W++R        V++      Y+ SP+ A+     +E  A+ +
Sbjct: 314 NELHHLQIMESLGGDKLWFDRFCALHAAVVYYWILLALYVFSPELAYNFSELIEAHAVDT 373

Query: 262 YTEFLKELDKGNIENVPAPAIATDYW--------------------RLPPNSTLKDVVLV 301
           Y EF+ + ++  ++++P P +A  Y+                    R PP   L DV   
Sbjct: 374 YGEFV-DANEELLKSLPPPLVAAMYYRSQDLYMFDSFQTSQPLKNPRRPPCKNLHDVFCN 432

Query: 302 VRADEAHHRDVNHYASDIHYQ 322
           +R DE  H        D   Q
Sbjct: 433 IRDDELEHVKTMRACQDATVQ 453


>gi|427728396|ref|YP_007074633.1| Alternative oxidase [Nostoc sp. PCC 7524]
 gi|427364315|gb|AFY47036.1| Alternative oxidase [Nostoc sp. PCC 7524]
          Length = 228

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 76/188 (40%), Gaps = 21/188 (11%)

Query: 142 VKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEA 201
           V  L +  +  ++ R   R  +LETVA VP      +LH            W+K    E+
Sbjct: 6   VGILVFVINTIYRDRPYPRFYVLETVARVPYFSYLSVLHLYETLGLWRKADWLKVHFAES 65

Query: 202 ENERMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 260
            NE  HL+    +     W +R L      +++      Y+I+P  A+  +  +E  A +
Sbjct: 66  WNELHHLLIMENLGGAGFWGDRFLAKTTALIYYWIITALYIINPGAAYNFMELVENHAYN 125

Query: 261 SYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLV 301
           SY +FL    +  ++  PAP +AT Y+                   R P    L DV + 
Sbjct: 126 SYDKFLTS-HEAELKAQPAPEVATLYYRDGDLYMFDEFQTAHNPTERRPQIENLYDVFVA 184

Query: 302 VRADEAHH 309
           +R DE  H
Sbjct: 185 IRDDEMEH 192


>gi|145351913|ref|XP_001420304.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580538|gb|ABO98597.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 245

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 21/179 (11%)

Query: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 209
           +L+  R Y  R   LETVA VP      +LH      +     ++K    E  NE  HL+
Sbjct: 19  NLYGGRSYA-RFHALETVARVPYFSFMSVLHLYETFGWWRKADYLKVHFAETMNEYHHLL 77

Query: 210 TFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 268
               +   + W +R +   +   ++      YL+SP++A+ ++  +E  A  +Y  FL  
Sbjct: 78  IMESLGGAELWKDRFVAQHIAVAYYWICVAQYLVSPRWAYNLLEQVESHAYATYDGFLNA 137

Query: 269 LDKGNIENVPAPAIATDYW------------------RLPPNSTLKDVVLVVRADEAHH 309
            ++  ++  P P++A  Y+                  R P    L DV + VR DEA H
Sbjct: 138 -NEEVLKATPPPSVAVQYYTKGDLYLFDEFQTVDRGERRPKIDNLYDVFVNVRNDEAEH 195


>gi|240275759|gb|EER39272.1| alternative oxidase [Ajellomyces capsulatus H143]
          Length = 103

 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 4/63 (6%)

Query: 261 SYTEFLKELDKG---NIENVPAPAIATDYWRLPPNS-TLKDVVLVVRADEAHHRDVNHYA 316
           +YT  +K+L+ G   N  N PAP IA  YW++P    T+ D++  +RADEA HR+VNH  
Sbjct: 2   TYTHAIKDLESGKLPNWANQPAPDIAVAYWQMPEGKRTILDLLYYIRADEAKHREVNHTL 61

Query: 317 SDI 319
           +++
Sbjct: 62  ANL 64


>gi|159491010|ref|XP_001703466.1| plastid terminal oxidase [Chlamydomonas reinhardtii]
 gi|158280390|gb|EDP06148.1| plastid terminal oxidase [Chlamydomonas reinhardtii]
          Length = 416

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 26/172 (15%)

Query: 163 MLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEV--AKPKWY 220
           +LETVA +P      +LH      F  +G  ++ +    E   MH +  ME       W+
Sbjct: 219 VLETVARIPYFAYISILHLYESLGFWRAGAELRKIHFAEEWNEMHHLQIMESLGGDRAWF 278

Query: 221 ERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAP 280
           +R +       ++      YL+SP+ A+  +  +E  A  +Y+ F+ E ++  + ++P P
Sbjct: 279 DRFIAEHAAVFYYWVLIAFYLVSPRMAYNFMQRVELHAADTYSAFV-ERNRTALADIPPP 337

Query: 281 AIATDYW-----------------------RLPPNSTLKDVVLVVRADEAHH 309
            +A  Y+                       R PP   L DV   +R DE  H
Sbjct: 338 LVALQYYYSDDLYLFDEFQTASRGAPGVPPRRPPCENLLDVFTNIRDDELEH 389


>gi|255086827|ref|XP_002509380.1| quinol-to-oxygen oxidoreductase [Micromonas sp. RCC299]
 gi|226524658|gb|ACO70638.1| quinol-to-oxygen oxidoreductase [Micromonas sp. RCC299]
          Length = 472

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 91/240 (37%), Gaps = 57/240 (23%)

Query: 117 EADLSIDLKKHHAPTTFSDKM------------ALWTVKS----LRWPTDLFF-QRRYGC 159
           EA+L  +L+   A  T S+              A W +K+    L    DL F + R   
Sbjct: 167 EAELMSELRDQLATLTLSNDAIWAREKARPEVPAPWIIKAPYLALCVFLDLVFPENRPIQ 226

Query: 160 RAMMLETVAAVPGMVGGMLL----------HCKSLRRFEHSGGWIKALLEEAENERMHLM 209
           R   LETVA +P      +L              LRR   +  W         NE  HL+
Sbjct: 227 RFWFLETVARMPYFSYNTMLTVYELLGWWRRSSELRRVHFAEEW---------NEYHHLL 277

Query: 210 TFMEVA-KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 268
               +     W +R L F    +++ A  + +L+SP  A+     +E  A+ +Y +F +E
Sbjct: 278 IHESLGGDAAWRDRFLGFHSALLYYGALNVAWLLSPALAYNFSELIEAHAVDTYAQFAEE 337

Query: 269 LDKGNIENVPAPAIATDYWR-------------------LPPNSTLKDVVLVVRADEAHH 309
            +K  +  +PAP IA  Y+                        +TL D    +R DEA H
Sbjct: 338 -NKATLRKLPAPRIARKYYEEGDLYLFDEFQTARPRSSRRVRVTTLYDAFCAIRDDEAEH 396


>gi|412987963|emb|CCO19359.1| predicted protein [Bathycoccus prasinos]
          Length = 393

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 81/200 (40%), Gaps = 39/200 (19%)

Query: 142 VKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGW-----IKA 196
           V S  +  D  ++ R   R   LET+A VP      +LH      +E  G W     +K 
Sbjct: 82  VDSAVFVIDKLYEGRDYPRFYALETIARVPYFSFLSVLHL-----YESFGWWRRADYLKV 136

Query: 197 LLEEAENERMHLMTFMEV--AKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYL 254
              E  NE  HL+  ME       + +R     V  V+F    L Y++SP+ A+ +   +
Sbjct: 137 HFAETMNEYHHLL-IMEAMGGADSFKDRFFAQHVAVVYFWVAVLIYMVSPRMAYNLSEQV 195

Query: 255 EEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRL------------------------- 289
           EE A  +Y +FLK  ++  ++  PA  +A  Y++L                         
Sbjct: 196 EEHAYATYDDFLKRKEE-ELKQTPACGVAVSYFQLGDLYLFDEFQTNVYEGLNKATNIRR 254

Query: 290 PPNSTLKDVVLVVRADEAHH 309
           P    + DV+  VR DE  H
Sbjct: 255 PKIKNMYDVIENVRNDELEH 274


>gi|307109996|gb|EFN58233.1| hypothetical protein CHLNCDRAFT_12129, partial [Chlorella
           variabilis]
          Length = 216

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 83/204 (40%), Gaps = 40/204 (19%)

Query: 144 SLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHC----------KSLRRFEHSG-- 191
           SL W  D+ +  R   R  +LETVA +P  V   +LH             LR+   S   
Sbjct: 7   SLCWALDVMYAGRPIERFWILETVARMPYFVYISMLHLYESLGWWRAGAELRKARRSSRA 66

Query: 192 ---GWIKALLEEAENERMHLMTFMEV--AKPKWYERALVFAVQGVFFNAYFLGYLISPKF 246
              G +     E  NE +H +  ME      +W +R L       ++ A  L YLISP  
Sbjct: 67  ELSGSLHVHFAEEWNE-LHHLQIMEALGGDLRWGDRFLAEHAAVFYYWALVLIYLISPAA 125

Query: 247 AHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYW------------------- 287
           +++ +  +E  A  +Y EF  E ++  ++ +P P +A  Y+                   
Sbjct: 126 SYQFMEMVEGHAADTYAEF-AEQNRERLQAIPPPLVALAYYKSGDLYLFDQFQTSWKAAG 184

Query: 288 --RLPPNSTLKDVVLVVRADEAHH 309
             R P  + L DV + +R DE  H
Sbjct: 185 ELRRPRCNNLYDVFINIRDDELEH 208


>gi|452821392|gb|EME28423.1| plastid terminal oxidase [Galdieria sulphuraria]
          Length = 378

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 2/167 (1%)

Query: 140 WTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLE 199
           W   +L    D  ++ R   R   LETVA +P      +LH      +  +G  +K    
Sbjct: 178 WIYDALCGFIDWAYKDRPVERFWFLETVARMPYFSYISVLHLYETLGWWRNGELLKIHFA 237

Query: 200 EAENERMHLMTFMEVA-KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEA 258
           E  NE  HL+    +    KW +R +       ++    L + +SP  A+     +E  A
Sbjct: 238 EEYNEFHHLLIMESLGGDRKWLDRFVAEHAAVFYYWILVLYFFLSPSLAYNFSELVEAHA 297

Query: 259 IHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRAD 305
           + +YTEFL+  ++  ++ +P P IA  Y+         +++L V  D
Sbjct: 298 VDTYTEFLQT-NEELLKQLPPPKIAERYYLADNLYMFDEIILQVLGD 343


>gi|149190030|ref|ZP_01868308.1| alternative oxidase [Vibrio shilonii AK1]
 gi|148836196|gb|EDL53155.1| alternative oxidase [Vibrio shilonii AK1]
          Length = 57

 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 34/50 (68%)

Query: 127 HHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGG 176
           H      S+K+AL   K L++  +LF+ ++Y  RA++LET+AAVPGMV G
Sbjct: 8   HKKAERVSEKVALSVTKLLKYVLNLFYGKKYDKRAVILETIAAVPGMVAG 57


>gi|219129931|ref|XP_002185130.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403309|gb|EEC43262.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 531

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 70/146 (47%), Gaps = 4/146 (2%)

Query: 145 LRWPTDLFFQRRY-GCRAMMLETVAAVPGMVGGMLLHC-KSLRRFEHSGGWIKALLEEAE 202
           L +  D  F  +Y   R  +LETVA +P      +LH  ++L  +  S G  +    E  
Sbjct: 213 LCYMLDEVFDGKYIPSRFFLLETVARMPYFSYITMLHLYETLGFWRRSAGMKRIHFAEEL 272

Query: 203 NERMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHS 261
           NE  HL+    +   + W+ R L      V++ A  L + ISP  ++R    LE  A+ +
Sbjct: 273 NEFHHLLIMESLGGDQAWWVRFLAQHSAIVYYVALCLLWGISPSLSYRFSELLETHAVST 332

Query: 262 YTEFLKELDKGNIENVPAPAIATDYW 287
           Y +FL E ++  ++ +P P  A +Y+
Sbjct: 333 YGQFLDENEEA-LKKLPPPLPAIEYY 357


>gi|146104475|ref|XP_001469836.1| putative alternative oxidase [Leishmania infantum JPCM5]
 gi|398024826|ref|XP_003865574.1| alternative oxidase, putative [Leishmania donovani]
 gi|134074206|emb|CAM72948.1| putative alternative oxidase [Leishmania infantum JPCM5]
 gi|322503811|emb|CBZ38897.1| alternative oxidase, putative [Leishmania donovani]
          Length = 486

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 48/96 (50%)

Query: 194 IKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGY 253
           ++ LL + E+  +H      +A+    ER LV  +Q V F  Y   +L+ P+   R++ Y
Sbjct: 239 LRGLLAQCESHAVHYQVLSCMAEITLLERGLVLLLQAVHFTIYLALFLLYPRMGFRLMAY 298

Query: 254 LEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRL 289
             EE+   +T+ + ++D G I     P +A  YW L
Sbjct: 299 TAEESSVVWTQMVNDVDLGKIAEPRVPQLALHYWGL 334


>gi|168049162|ref|XP_001777033.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671598|gb|EDQ58147.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 212

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 74/183 (40%), Gaps = 26/183 (14%)

Query: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLM 209
           D+ F  R   R   LETVA +P      +LH      +   G  ++ +    E   MH +
Sbjct: 3   DVIFNDRPIQRFWFLETVARMPYFSYISMLHLYETLGWWRIGAEVRKVHFAEEWNEMHHL 62

Query: 210 TFMEV--AKPKWYERALVFAVQGVFFNAYFLG--YLISPKFAHRMVGYLEEEAIHSYTEF 265
             ME      +W +R   FA    FF  + L   +LISPK A+     +E  A+ +Y EF
Sbjct: 63  RIMESLGGDLEWGDR--FFAQHAAFFYYWVLNLMFLISPKVAYNFSELIEMHAVDTYGEF 120

Query: 266 LKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADE 306
             + ++  ++ +P P  A +Y+                   R P  + L DV   +  DE
Sbjct: 121 -ADANEELLKTLPPPPAALEYYESEDLYMYDEFQTSQAPETRRPKINNLYDVFKAISGDE 179

Query: 307 AHH 309
             H
Sbjct: 180 LEH 182


>gi|404325818|gb|AFR58666.1| plastid terminal oxidase [Dunaliella salina]
          Length = 451

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 74/187 (39%), Gaps = 34/187 (18%)

Query: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLE-------EAE 202
           DL +  R   R   LETVA +P       +H         + GW +A  E       E  
Sbjct: 246 DLVYNNRPIQRFWFLETVARMPYFSYISCIH------LYETLGWWRAAAELRKIHFAEEW 299

Query: 203 NERMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHS 261
           NE  HL     +   + W++R L +     ++      Y+ SPK A+     LE  A+ +
Sbjct: 300 NELHHLQIMEALGGDRLWFDRFLAYHSAIAYYWVLVGLYICSPKLAYNFSELLEAHAVDT 359

Query: 262 YTEFLKELDKGNIENVPAPAIATDYWRL-------------------PPNSTLKDVVLVV 302
           Y EF+   ++  ++++  P +A  Y+R                    P    L DV + +
Sbjct: 360 YGEFVSS-NEELLKSLEPPLVAAQYYRSPDLYMFDEFQTDISSGKRNPKCDNLYDVFVNI 418

Query: 303 RADEAHH 309
           R DEA H
Sbjct: 419 RDDEAEH 425


>gi|302760829|ref|XP_002963837.1| hypothetical protein SELMODRAFT_405292 [Selaginella moellendorffii]
 gi|300169105|gb|EFJ35708.1| hypothetical protein SELMODRAFT_405292 [Selaginella moellendorffii]
          Length = 290

 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 29/37 (78%), Gaps = 5/37 (13%)

Query: 177 MLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFME 213
           MLLHC+SLRRFE SGG      EEAE+ER+++MT ++
Sbjct: 211 MLLHCRSLRRFEQSGG-----AEEAESERVYVMTVVQ 242


>gi|401420614|ref|XP_003874796.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
 gi|322491032|emb|CBZ26296.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 484

 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 47/96 (48%)

Query: 194 IKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGY 253
           ++ LL + E+  +H      +A+    ER LV  +Q V F  Y   +L  P+   R++ Y
Sbjct: 237 LRGLLAQCESHAVHYQVLSCMAEITLLERGLVLLLQAVHFTIYLALFLFYPRMGFRLMAY 296

Query: 254 LEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRL 289
             EE+   +T+ + ++D G I     P +A  YW L
Sbjct: 297 TAEESSVVWTQMVNDVDLGKIAEPRVPQLALHYWGL 332


>gi|302782501|ref|XP_002973024.1| hypothetical protein SELMODRAFT_98486 [Selaginella moellendorffii]
 gi|300159625|gb|EFJ26245.1| hypothetical protein SELMODRAFT_98486 [Selaginella moellendorffii]
          Length = 255

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 77/189 (40%), Gaps = 26/189 (13%)

Query: 144 SLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAEN 203
           +L W  D+ F+ R   R   LETVA +P      +LH      +   G  ++ +    E 
Sbjct: 47  ALCWMLDVIFEGRPIQRFWFLETVARMPYFSYISMLHLYETLGWWRVGADVRKVHFAEEW 106

Query: 204 ERMHLMTFMEV--AKPKWYERALVFAVQGVFFNAYFLGYL--ISPKFAHRMVGYLEEEAI 259
             MH +  ME       W +R   F     FF  + L ++  +SPK A+     +E  A+
Sbjct: 107 NEMHHLKIMESLGGDLLWGDR--FFGQHAAFFYYWILNFMFFVSPKVAYNFSELIEMHAV 164

Query: 260 HSYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVL 300
            +Y +F+ E ++  ++ +P    A  Y+                   R P   +L DV +
Sbjct: 165 DTYGQFVDE-NEELLKQLPPSPEAVAYYENEDLYMFDEFQTSRAPESRRPKVDSLYDVFV 223

Query: 301 VVRADEAHH 309
            ++ DE  H
Sbjct: 224 AIKGDEFEH 232


>gi|302805482|ref|XP_002984492.1| hypothetical protein SELMODRAFT_120335 [Selaginella moellendorffii]
 gi|300147880|gb|EFJ14542.1| hypothetical protein SELMODRAFT_120335 [Selaginella moellendorffii]
          Length = 255

 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 26/189 (13%)

Query: 144 SLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAEN 203
           +L W  D+ F+ R   R   LETVA +P      +LH      +   G  ++ +    E 
Sbjct: 47  ALCWMLDVIFEGRPIQRFWFLETVARMPYFSYISMLHLYETLGWWRVGADVRKVHFAEEW 106

Query: 204 ERMHLMTFMEV--AKPKWYERALVFAVQGVFFNAYFLGYL--ISPKFAHRMVGYLEEEAI 259
             MH +  ME       W +R   F     FF  + L ++  +SPK A+     +E  A+
Sbjct: 107 NEMHHLKIMESLGGDLLWGDR--FFGQHAAFFYYWILNFMFFVSPKVAYNFSELIEMHAV 164

Query: 260 HSYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVL 300
            +Y +F  E ++  ++ +P    A  Y+                   R P   +L DV +
Sbjct: 165 DTYGQFFDE-NEELLKQLPPSPEAVAYYENEDLYMFDEFQTSRAPESRRPKVDSLYDVFV 223

Query: 301 VVRADEAHH 309
            ++ DE  H
Sbjct: 224 AIKGDEFEH 232


>gi|157877409|ref|XP_001687022.1| putative alternative oxidase [Leishmania major strain Friedlin]
 gi|68130097|emb|CAJ09405.1| putative alternative oxidase [Leishmania major strain Friedlin]
          Length = 493

 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 1/105 (0%)

Query: 186 RFEHS-GGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISP 244
           R EHS    ++ LL + E+  +H      +A+    ER+LV  +Q V F  Y   +L  P
Sbjct: 237 RPEHSYVDELRGLLAQCESHAVHYQVLSCMAEITLLERSLVLLLQAVHFTIYLALFLFYP 296

Query: 245 KFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRL 289
           +   R++ Y  EE+   +T+ + ++D G I     P +A  YW L
Sbjct: 297 RMGFRLMAYAAEESSVVWTQMVNDVDLGKIAEPRVPQLALHYWGL 341


>gi|404325822|gb|AFR58668.1| plastid terminal oxidase [Dunaliella bardawil]
          Length = 451

 Score = 46.2 bits (108), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 36/188 (19%)

Query: 150 DLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLE-------EAE 202
           D+ +  R   R   LETVA +P       +H         + GW +A  E       E  
Sbjct: 246 DVVYNNRPLQRFWFLETVARMPYFSYISCIH------LYETLGWWRAAAELRKIHFAEEW 299

Query: 203 NERMHLMTFMEV--AKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIH 260
           NE +H +  ME       W++R L +     ++      Y+ SP+ ++     LE  A+ 
Sbjct: 300 NE-LHHLQIMEALGGDCMWFDRFLAYHSAIAYYWVLVALYIFSPRLSYNFSELLEAHAVD 358

Query: 261 SYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLV 301
           +Y+EF+   ++  ++++  P +A  Y+                   R P    L DV + 
Sbjct: 359 TYSEFVSS-NEVLLKSLEPPLVAAQYYRSPDLYMFDEFQTDIKSEKRTPKCDNLYDVFVN 417

Query: 302 VRADEAHH 309
           +R DEA H
Sbjct: 418 IRDDEAEH 425


>gi|412985307|emb|CCO20332.1| predicted protein [Bathycoccus prasinos]
          Length = 394

 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 4/141 (2%)

Query: 150 DLFF-QRRYGCRAMMLETVAAVPGM-VGGMLLHCKSLRRFEHSGGWIKALLEEAENERMH 207
           DL+F + +   R   LETVA +P      ML   + L  +  S    K    E  NE  H
Sbjct: 112 DLWFPENKPVQRFWFLETVARMPYFSYTTMLTLYELLGWWRRSSELRKVHFAEEWNEYHH 171

Query: 208 LMTFMEVA-KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFL 266
           L+    +    +W +R L      V++    + +L+SPK A+     +E  A+ +Y +F 
Sbjct: 172 LLIMESLGGDRRWSDRFLAQHAALVYYFGLVVVWLLSPKLAYNFSEKIETHAVATYAQFT 231

Query: 267 KELDKGNIENVPAPAIATDYW 287
           +E +K  +E++PAP +A  Y+
Sbjct: 232 EE-NKELLESLPAPEVAKKYY 251


>gi|118637020|emb|CAI77910.1| plastid terminal oxidase precursor [Guillardia theta]
          Length = 222

 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 69/170 (40%), Gaps = 19/170 (11%)

Query: 99  KDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYG 158
           + DG+ W    + P    E    +D+       T S   AL TV  L+   D ++ ++  
Sbjct: 66  RKDGTTWGSKSY-PVSTVEEPEPLDI------VTKSIAQALVTV--LKGSLDWYYHKKSD 116

Query: 159 -CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKP 217
             R  +LETVA VP      +LH      +     WIK    EA+NE  HL+    +   
Sbjct: 117 FARFFVLETVARVPYFAYMSVLHLYESFGYHDRAHWIKIHYAEADNELHHLLIMEALGGN 176

Query: 218 K-----WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSY 262
           K     W  +   FA        YFL     P+ AH ++  +E  A H+Y
Sbjct: 177 KEFSDRWIAQHAAFAYNWFCVTFYFL----HPRGAHNVMFLIENHAYHTY 222


>gi|145354902|ref|XP_001421713.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581951|gb|ABP00007.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 240

 Score = 43.9 bits (102), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 22/171 (12%)

Query: 160 RAMMLETVAAVPGM-VGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVA-KP 217
           R   LETVA +P      ML   + L  +  S    K    E  NE  HL+    +    
Sbjct: 53  RFWFLETVARMPYFSYTSMLTFYEILGWWRRSSELRKVHFAEEWNEYHHLLVMESLGGDA 112

Query: 218 KWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENV 277
            W +R L      V++      +LISP  A+     +E  A+ +Y +F+ + +   ++++
Sbjct: 113 CWRDRFLGQHAAIVYYFVLVALWLISPALAYNFSELIEGHAVDTYGQFVDQ-NAELLKSM 171

Query: 278 PAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 309
           PAP IA +Y+                   R P   +L DV   +R DE  H
Sbjct: 172 PAPRIAVEYYEAADLYLFDEFQTAREVRLRRPQIRSLFDVFSNIRDDEGEH 222


>gi|308812468|ref|XP_003083541.1| quinol-to-oxygen oxidoreductase (ISS) [Ostreococcus tauri]
 gi|116055422|emb|CAL58090.1| quinol-to-oxygen oxidoreductase (ISS) [Ostreococcus tauri]
          Length = 505

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 73/180 (40%), Gaps = 22/180 (12%)

Query: 151 LFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKAL-LEEAENERMHLM 209
           LF + +   R   LETVA +P       L    +  +   G  ++ +   E  NE  HL+
Sbjct: 245 LFDETKPVQRFWFLETVARMPYYSYTAALTFYEILGWYRGGAELRKIHFAEEWNEYHHLL 304

Query: 210 TFMEVA-KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKE 268
               +     W +R L      V++    L + +SP  A+     +E  A+ +Y +F+ +
Sbjct: 305 IMESLGGDVSWRDRFLGQHAALVYYGVLILLWFMSPALAYNFSELIEAHAVDTYAQFVDQ 364

Query: 269 LDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDVVLVVRADEAHH 309
            +   ++ +PAP IA +Y+                   R P   TL DV   +R DE  H
Sbjct: 365 -NAELLKTMPAPRIAVEYYEGADLYLFDEFQTAREVRTRRPRIRTLYDVFSNIRDDEGEH 423


>gi|397630744|gb|EJK69894.1| hypothetical protein THAOC_08807, partial [Thalassiosira oceanica]
          Length = 104

 Score = 43.5 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 9/68 (13%)

Query: 119 DLSIDLKKHHAPTTFSDKMALWTVKSLR--------WPTDLFFQRRYGCRAMMLETVAAV 170
           DL I+L  H  P TF D+ AL+ VK +R        W        +   RA+ LET+AAV
Sbjct: 37  DLDINLT-HVKPKTFLDRSALFAVKCVRTVFDIGTGWNRGEITTDKILNRAIFLETIAAV 95

Query: 171 PGMVGGML 178
           PGMV  ++
Sbjct: 96  PGMVAAVI 103


>gi|384251652|gb|EIE25129.1| hypothetical protein COCSUDRAFT_46597 [Coccomyxa subellipsoidea
           C-169]
          Length = 487

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 85/212 (40%), Gaps = 43/212 (20%)

Query: 128 HAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRF 187
           HA   F   +A  T+  +    D+ + +R   R   LE VA +P      +LH       
Sbjct: 228 HAKAPFIINVAYTTLCVV---MDVLYNKRPIQRFWFLEVVARMPYFSYISMLH------L 278

Query: 188 EHSGGWIKALLE-------EAENERMHLMTFMEVAKPK-WYERALVFAVQ--GVFFNAYF 237
             S GW +A  E       E  NE  HL     +   + W +R   FA Q   VF+    
Sbjct: 279 YESLGWWRAGAELRRIHFAEEWNELHHLQIMESLGGDQFWIDR---FAAQHAAVFYYWVI 335

Query: 238 LGYL-ISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYW--------- 287
           +G+   SP+ A+     +E  A+ +Y EF++E +   ++ +P P +A +Y+         
Sbjct: 336 VGFFAFSPQLAYVFSELVEGHAVDTYEEFVEE-NAELLKTLPPPVVALEYYKNGDLYLFD 394

Query: 288 ----------RLPPNSTLKDVVLVVRADEAHH 309
                     R P  + L DV   +  DE  H
Sbjct: 395 ELQTTGTDPKRRPSCNNLYDVFCNIAGDEREH 426


>gi|397605676|gb|EJK59088.1| hypothetical protein THAOC_20735 [Thalassiosira oceanica]
          Length = 695

 Score = 42.4 bits (98), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 6/150 (4%)

Query: 144 SLRWPTDLFFQRRYG-CRAMMLETVAAVPGMVGGMLLHC-KSLRRFEHSGGWIKALLEEA 201
           +L +  D+ F+ R    R  +LETVA +P      +LH  +SL  +  S    +    E 
Sbjct: 354 ALCFLLDVVFEGRNAFSRFFLLETVARMPYFSYITMLHLYESLGFWRRSSDIKRIHFAEE 413

Query: 202 ENERMHLMTF--MEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAI 259
            NE  HL+    M   +P W  R L       ++ A  L ++ SP  +++    LE  A+
Sbjct: 414 WNEFHHLLIMESMGGDQPYWV-RFLAQHSAVAYYVALCLLWIASPSLSYKFSEMLETHAV 472

Query: 260 HSYTEFLKELDKGNIENVPAPAIATDYWRL 289
            +Y +F+ E ++  ++ +P   +A +Y+ +
Sbjct: 473 DTYGQFVDE-NESKLKELPPSLVAVEYYTI 501


>gi|303284193|ref|XP_003061387.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456717|gb|EEH54017.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 240

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 73/194 (37%), Gaps = 27/194 (13%)

Query: 137 MALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGM-VGGMLLHCKSLRRFEHSGGWIK 195
            AL T   L +P D   QR +      LE+VA +P      ML   + L  +  S    +
Sbjct: 35  FALCTFLDLVFPEDRPIQRFW-----FLESVARMPYFSYNTMLTLYELLGWWRRSSELRR 89

Query: 196 ALLEEAENERMHLMTFMEVA-KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYL 254
               E  NE  HL+    +     W +R L       ++      +LISP  A+     +
Sbjct: 90  VHFAEEWNEYHHLLIMESLGGDALWRDRFLAQHAALAYYLVLIALWLISPALAYNFSELI 149

Query: 255 EEEAIHSYTEFLKELDKGNIENVPAPAIATDYWR-------------------LPPNSTL 295
           E  A+ +Y +F  E +K  +  +PAP IA  Y+                     P   TL
Sbjct: 150 EAHAVDTYAQFADE-NKEKLRTLPAPRIARAYYENDDMYLFDEFQTARPRSSRRPRVRTL 208

Query: 296 KDVVLVVRADEAHH 309
            D    +R DE  H
Sbjct: 209 HDTFCAIRDDENEH 222


>gi|423370635|ref|ZP_17348041.1| hypothetical protein IC3_05710 [Bacillus cereus VD142]
 gi|401073606|gb|EJP82025.1| hypothetical protein IC3_05710 [Bacillus cereus VD142]
          Length = 116

 Score = 41.6 bits (96), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 20/95 (21%)

Query: 67  VQTTGAAAAGGSGNKDEKRIVSYWGVEAPKVNKDDGSEW-----------KWNCFRPWEA 115
           ++    +   G+ N D KR++     E  KV   D SEW           +  CF+ W+ 
Sbjct: 10  IENGDISVNIGNANHDLKRVI-----ECFKVEGFDLSEWYLTEIASIESTRVYCFKDWDG 64

Query: 116 YEADLSIDLKKHHAPTTFS----DKMALWTVKSLR 146
           Y  D+ ID+     P  F     D+ +L+  KS+R
Sbjct: 65  YYVDMLIDVNNQVTPNYFKNHNVDQYSLFQAKSIR 99


>gi|159468876|ref|XP_001692600.1| alternative oxidase [Chlamydomonas reinhardtii]
 gi|158278313|gb|EDP04078.1| alternative oxidase [Chlamydomonas reinhardtii]
          Length = 471

 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 21/140 (15%)

Query: 160 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLE-------EAENERMHLMTFM 212
           R   LETVA +P      +LH         S GW +A  E       E  NE  HL    
Sbjct: 273 RFWFLETVARMPYFSYISMLH------LYESLGWWRAGAELRKIHFAEEWNELHHLQIME 326

Query: 213 EVAKPK-WYERALVFAVQ--GVFFNAYFLG-YLISPKFAHRMVGYLEEEAIHSYTEFLKE 268
            +   + W++R   FA Q   + +    LG Y+ SP+ A+     +E  A+ +Y EF+ +
Sbjct: 327 SLGGDQLWFDR---FAAQHAAILYYWILLGLYVFSPRLAYNFSELIEYHAVDTYGEFV-D 382

Query: 269 LDKGNIENVPAPAIATDYWR 288
            ++  ++++P P +A  Y+R
Sbjct: 383 ANEELLKSLPPPLVAAVYYR 402


>gi|219124647|ref|XP_002182610.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405956|gb|EEC45897.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 314

 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 72/185 (38%), Gaps = 35/185 (18%)

Query: 156 RYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVA 215
           R   R   LET+A +P      +LH            +++    E+ NE  HL+   E+ 
Sbjct: 122 RAFARFYALETIARMPYFSYLSVLHLWETLGMWRRAEYLQVHFAESWNELHHLLIMEELG 181

Query: 216 -KPKWYERALVFAVQGVFFNAYFLG---YLISPKFAHRMVGYLEEEAIHSYTEFLKELDK 271
              +W +R   F  Q + F  Y++    Y ++P  A+ +   +EEEA  +Y  FL+    
Sbjct: 182 GNGRWGDR---FVAQHIAFFYYWIVVTLYAVNPTMAYNLNQAVEEEAYETYDGFLQT-HA 237

Query: 272 GNIENVPAPAIATDYW---------------------------RLPPNSTLKDVVLVVRA 304
             +++ PAP  A  Y+                           R P   TL D +  +R 
Sbjct: 238 EYLQSQPAPQAAIRYYTGDDLYLFHAMHWDTRQPKEPESPVEQRRPTCETLYDTIRNIRD 297

Query: 305 DEAHH 309
           DE  H
Sbjct: 298 DELEH 302


>gi|14595199|gb|AAK70807.1| oxidase [Oryza sativa]
          Length = 158

 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 23/99 (23%)

Query: 233 FNAYFLG---YLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYW-- 287
           F  YF+    Y++SP+ A+     +E  A  +Y +F+K L +  ++ +PAP  A +Y+  
Sbjct: 10  FFYYFMTVAMYMVSPRMAYHFSECVERHAYSTYDKFIK-LHEDELKKLPAPEAALNYYLN 68

Query: 288 -----------------RLPPNSTLKDVVLVVRADEAHH 309
                            R P    L DV + +R DEA H
Sbjct: 69  EDLYLFDEFQTARVPCSRRPKIDNLYDVFVNIRDDEAEH 107


>gi|20149254|gb|AAM12876.1|AF494290_1 quinol-to-oxygen oxidoreductase [Chlamydomonas reinhardtii]
          Length = 471

 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 21/147 (14%)

Query: 153 FQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLE-------EAENER 205
           ++ R   R   LETVA +P      +LH         S GW +A  E       E  NE 
Sbjct: 266 YENRPIQRFWFLETVARMPYFSYISMLH------LYESLGWWRAGAELRKIHFAEEWNEL 319

Query: 206 MHLMTFMEVAKPK-WYERALVFAVQ--GVFFNAYFLG-YLISPKFAHRMVGYLEEEAIHS 261
            HL     +   + W++R   FA Q   + +    LG Y+ SP+ A+     +E  A+ +
Sbjct: 320 HHLQIMESLGGDQLWFDR---FAAQHAAILYYWILLGLYVFSPRLAYNFSELIEYHAVDT 376

Query: 262 YTEFLKELDKGNIENVPAPAIATDYWR 288
           Y EF  + ++  ++++P P +A  Y+R
Sbjct: 377 YGEFW-DANEELLKSLPPPLVAAVYYR 402


>gi|428168785|gb|EKX37726.1| centrin/plastid terminal oxidase fusion protein [Guillardia theta
           CCMP2712]
          Length = 1019

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 76/191 (39%), Gaps = 32/191 (16%)

Query: 145 LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKAL------L 198
           L W  D+ F  R   R   LETVA +P        +   L  +E  G W  ++       
Sbjct: 764 LCWLIDVLFVNRPIQRFWFLETVARMP-----YFSYITMLTLYESLGWWRSSMDSRRVHF 818

Query: 199 EEAENERMHLMTFMEVAKPK-WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEE 257
            E  NE  HL     +   + W++R +       +F      +L+SP  A+     +E  
Sbjct: 819 AEEWNEVQHLKIMEALGGDRSWFDRFMGRHAAIFYFIILNHIWLLSPSLAYNFSELIEFH 878

Query: 258 AIHSYTEFLKELDKGNIENVPAPAIATDYW-------------------RLPPNSTLKDV 298
           A+ +Y EF+ + ++  ++++P P  A +Y+                   R P   +L DV
Sbjct: 879 AVDTYGEFV-DANEELLKSLPPPQEAVEYYNSKDLYLFDEFQTGRTPKSRRPVIRSLYDV 937

Query: 299 VLVVRADEAHH 309
              +R DE  H
Sbjct: 938 FCNIRDDELEH 948


>gi|224014510|ref|XP_002296917.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220968297|gb|EED86645.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 636

 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 82/196 (41%), Gaps = 32/196 (16%)

Query: 144 SLRWPTDLFFQ-RRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKAL-LEEA 201
           +L +  D+ F+ R    R  +LETVA +P      +LH      F      IK +   E 
Sbjct: 283 ALCFMLDVVFEGRNPFSRFFLLETVARMPYFSYITMLHLYETMGFWRRSSDIKRIHFAEE 342

Query: 202 ENERMHLMTFMEVA--KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAI 259
            NE  HL+    +   +P W  R +       ++ A  + +++SP  +++    LE  A+
Sbjct: 343 WNEFHHLLIMESLGGDQPYWV-RLMAQHSALAYYIALCMLWMLSPTLSYKFSEMLETHAV 401

Query: 260 HSYTEFLKELDKGNIENVPAPAIATDYW------------------------RLPPNS-- 293
            +Y +F+ E ++  ++ +P    A +Y+                        R+P  +  
Sbjct: 402 DTYGQFVDE-NEDKLKELPPSIAAVEYYTVGVSDPMFGEYQTASVSDPNRRVRVPGTNLR 460

Query: 294 TLKDVVLVVRADEAHH 309
           +L DV + +R DE  H
Sbjct: 461 SLYDVFVAIRNDEGDH 476


>gi|58259693|ref|XP_567259.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|57229309|gb|AAW45742.1| conserved hypothetical protein [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1400

 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 18/140 (12%)

Query: 184  LRRFEHSGGWIKALLEEAENERMHLMTFM-EVAKPKWYERALVFAVQ-GVFFNAYF--LG 239
            ++    S GW + L    E + M L TF+   AK +  E+AL++  Q GVF   ++  LG
Sbjct: 990  VKDLSCSSGWKRTLYAVIELKWMKLATFLIGEAKRQTDEKALIYLCQEGVFQTMWYIILG 1049

Query: 240  YLIS---------PKFAHRMVGYLEEEAIHSYTEFLKELDKG-NIENVPAPAIATDYWRL 289
            Y IS          ++ +R+V YL  ++         E D G ++E +   A   D+W  
Sbjct: 1050 YAISGCIFGLSIVNEYFYRVV-YLYRDSTPDIPVLALEADNGYSVEEL---AELQDFWSS 1105

Query: 290  PPNSTLKDVVLVVRADEAHH 309
            PPN  + D    +   EA +
Sbjct: 1106 PPNCLISDRANAILNKEARY 1125


>gi|388491666|gb|AFK33899.1| unknown [Lotus japonicus]
          Length = 50

 Score = 39.7 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/18 (83%), Positives = 18/18 (100%)

Query: 300 LVVRADEAHHRDVNHYAS 317
           +VVRA+EAHHRDVNH+AS
Sbjct: 1   MVVRANEAHHRDVNHFAS 18


>gi|260436099|ref|ZP_05790069.1| plastoquinol oxidase [Synechococcus sp. WH 8109]
 gi|260413973|gb|EEX07269.1| plastoquinol oxidase [Synechococcus sp. WH 8109]
          Length = 211

 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 11/105 (10%)

Query: 219 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVP 278
           W +R +   V  + +  + L  L+  + A  +   +E EA+ +Y   L E  +G ++  P
Sbjct: 101 WIDRFVARHVAVLVYWIFALTTLLDHELASLLGEAVEAEAVKTYRRMLLEQPEGWLQQ-P 159

Query: 279 APAIATDYWRLPPN----------STLKDVVLVVRADEAHHRDVN 313
              IAT YWR   N           TL+DV+ ++  DE  H   N
Sbjct: 160 VTPIATAYWRKEGNMWAARDEREPETLRDVIELIARDELDHVAAN 204


>gi|33865421|ref|NP_896980.1| plastoquinol terminal oxidase [Synechococcus sp. WH 8102]
 gi|33632590|emb|CAE07402.1| possible oxidase [Synechococcus sp. WH 8102]
          Length = 207

 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 13/106 (12%)

Query: 219 WYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVP 278
           W +R L   +  V +  + +  LI  + A  +   +E EA+ +Y   LKE  +  ++  P
Sbjct: 97  WGDRFLARHIAVVIYWVFAITTLIDHEMAALLGEAVEVEAVKTYRRMLKEQPEEWLDQ-P 155

Query: 279 APAIATDYWRLPPNS-----------TLKDVVLVVRADEAHHRDVN 313
           A   AT YW   PNS           +++DVV  +  DEA H   N
Sbjct: 156 AAPTATHYWE-KPNSMWRVRGDHMPGSMRDVVEAIVRDEADHVKAN 200


>gi|302549770|ref|ZP_07302112.1| D-alanine-poly(phosphoribitol) ligase, subunit 1 [Streptomyces
           viridochromogenes DSM 40736]
 gi|302467388|gb|EFL30481.1| D-alanine-poly(phosphoribitol) ligase, subunit 1 [Streptomyces
           viridochromogenes DSM 40736]
          Length = 603

 Score = 37.4 bits (85), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 7   VRLFSTLTARTASTEAAARILAGQTNRHLSTFLVRAPILGSRNRSTLALGGEKEQQREEN 66
           VRL + + +RTA   A A +LA +T   L   +  +  +  R    L L G+ ++ R  +
Sbjct: 451 VRLIAYVASRTAGP-ALASVLAERTAAALPAHMCPSKYVVLRELP-LTLNGKVDKARLPS 508

Query: 67  VQTTGAAAAGGSGNKDEKRIVSYWGV--EAPKVNKD 100
            + TGA+A G      E RI   W V  + P+V +D
Sbjct: 509 PEVTGASAQGPDAAGTEARIAEVWRVVLDVPRVERD 544


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.320    0.134    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,495,457,927
Number of Sequences: 23463169
Number of extensions: 234744923
Number of successful extensions: 529802
Number of sequences better than 100.0: 705
Number of HSP's better than 100.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 105
Number of HSP's that attempted gapping in prelim test: 528512
Number of HSP's gapped (non-prelim): 760
length of query: 336
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 193
effective length of database: 9,003,962,200
effective search space: 1737764704600
effective search space used: 1737764704600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 77 (34.3 bits)