BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019766
(336 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BOB|A Chain A, Histone Acetyltransferase Hat1 From Saccharomyces
Cerevisiae In Complex With Acetyl Coenzyme A
Length = 320
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 99/199 (49%), Gaps = 40/199 (20%)
Query: 53 AGHLYSRLIPLVLLLVDGSNPIDVTDPRWELYILIRKKMDQQGDIQHRLLGFTAIYRFYH 112
A ++ R+ LL ++ +N ID TDP W++Y L+ KK + L+GF Y+++H
Sbjct: 146 ARRMHRRVQIFSLLFIEAANYIDETDPSWQIYWLLNKKTKE-------LIGFVTTYKYWH 198
Query: 113 YPDST----------RMRLSQILILPPYQRKGYGGFLTE-VLSNVAVAENVHDFTVEEPL 161
Y + R ++SQ LI PPYQ KG+G L E ++ + +++ + TVE+P
Sbjct: 199 YLGAKSFDEDIDKKFRAKISQFLIFPPYQNKGHGSCLYEAIIQSWLEDKSITEITVEDPN 258
Query: 162 DSFQHVRTCVDIQHL--LAFEPIQHAINSAVSHLKQGKLSKKILAPRFVPPASTVEEVRK 219
++F +R DIQ L L ++ + K LS + L E RK
Sbjct: 259 EAFDDLRDRNDIQRLRKLGYDAVFQ---------KHSDLSDEFL-----------ESSRK 298
Query: 220 VLKINKKQFLQCWEILIYL 238
LK+ ++QF + E+L+ L
Sbjct: 299 SLKLEERQFNRLVEMLLLL 317
>pdb|2P0W|A Chain A, Human Histone Acetyltransferase 1 (Hat1)
pdb|2P0W|B Chain B, Human Histone Acetyltransferase 1 (Hat1)
Length = 324
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Query: 57 YSRLIPLVLLLVDGSNPIDVTDPRWELYILIRKKMDQQGDIQHRLLGFTAIYRFYHYPDS 116
+ RL ++ ++ ++ IDV D RW Y L+ +K ++ G +G+ +Y +Y YPD
Sbjct: 158 HERLQTFLMWFIETASFIDVDDERWH-YFLVFEKYNKDGATLFATVGYMTVYNYYVYPDK 216
Query: 117 TRMRLSQILILPPYQRKGYGGFLTEVLSNVAVA-ENVHDFTVEEPLDSFQHVRTCV 171
TR R+SQ+LIL P+Q +G+G L E + V D T E+P S+ +R V
Sbjct: 217 TRPRVSQMLILTPFQGQGHGAQLLETVHRYYTEFPTVLDITAEDPSKSYVKLRDFV 272
>pdb|2OU2|A Chain A, Acetyltransferase Domain Of Human Hiv-1 Tat Interacting
Protein, 60kda, Isoform 3
Length = 280
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 103 GFTAIYRFYHYPDSTR-MRLSQILILPPYQRKGYGGFLTEVLSNVAVAENVHDFTVEEPL 161
GF + F +ST ++ IL LPPYQR+GYG L E ++ E T E+PL
Sbjct: 122 GFHIVGYFSKEKESTEDYNVACILTLPPYQRRGYGKLLIEFSYELSKVEGKTG-TPEKPL 180
>pdb|2Y0M|A Chain A, Crystal Structure Of The Complex Between Dosage
Compensation Factors Msl1 And Mof
Length = 287
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 114 PDSTRMRLSQILILPPYQRKGYGGFL 139
PD + + IL LPPYQR+GYG FL
Sbjct: 138 PDGNNV--AXILTLPPYQRRGYGKFL 161
>pdb|4DNC|A Chain A, Crystal Structure Of Human Mof In Complex With Msl1
pdb|4DNC|B Chain B, Crystal Structure Of Human Mof In Complex With Msl1
Length = 289
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 114 PDSTRMRLSQILILPPYQRKGYGGFL 139
PD + + IL LPPYQR+GYG FL
Sbjct: 140 PDGNNV--ACILTLPPYQRRGYGKFL 163
>pdb|2PQ8|A Chain A, Myst Histone Acetyltransferase 1
Length = 278
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 114 PDSTRMRLSQILILPPYQRKGYGGFLTEVLSNVAVAENVHDFTVEEPLD-----SFQHVR 168
PD + + IL LPPYQR+GYG FL ++ E+ + E+PL S++
Sbjct: 138 PDGNNV--ACILTLPPYQRRGYGKFLIAFSYELSKLESTVG-SPEKPLSDLGKLSYRSYW 194
Query: 169 TCVDIQHLLAF 179
+ V +++L F
Sbjct: 195 SWVLLENLRDF 205
>pdb|3TOA|A Chain A, Human Mof Crystal Structure With Active Site Lysine
Partially Acetylated
Length = 266
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 114 PDSTRMRLSQILILPPYQRKGYGGFL 139
PD + + IL LPPYQR+GYG FL
Sbjct: 134 PDGNNV--ACILTLPPYQRRGYGKFL 157
>pdb|2GIV|A Chain A, Human Myst Histone Acetyltransferase 1
Length = 295
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 114 PDSTRMRLSQILILPPYQRKGYGGFLTEVLSNVAVAENVHDFTVEEPLD-----SFQHVR 168
PD + + IL LPPYQR+GYG FL ++ E+ + E+PL S++
Sbjct: 155 PDGNNV--ACILTLPPYQRRGYGKFLIAFSYELSKLESTVG-SPEKPLSDLGKLSYRSYW 211
Query: 169 TCVDIQHLLAF 179
+ V +++L F
Sbjct: 212 SWVLLENLRDF 222
>pdb|3TOB|A Chain A, Human Mof E350q Crystal Structure With Active Site Lysine
Partially Acetylated
Length = 270
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 114 PDSTRMRLSQILILPPYQRKGYGGFL 139
PD + + IL LPPYQR+GYG FL
Sbjct: 134 PDGNNV--ACILTLPPYQRRGYGKFL 157
>pdb|2OZU|A Chain A, Crystal Structure Of Human Myst Histone Acetyltransferase
3 In Complex With Acetylcoenzyme A
Length = 284
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 13/134 (9%)
Query: 118 RMRLSQILILPPYQRKGYGGFLTEVLSNVAVAENVHDFTVEEPLDSFQHVRTCVDIQHLL 177
+ +S I+ILP YQRKGYG FL + S + + E+PL + + ++
Sbjct: 145 KYNVSCIMILPQYQRKGYGRFLID-FSYLLSKREGQAGSPEKPLSDLGRLSYMAYWKSVI 203
Query: 178 AFEPIQHAINSAVSHLKQGKLSKKILAPRFVPPASTVEEVR-------KVLKINKKQFLQ 230
E + H + +S K KL+ + P+ + ST+ +R + + I +++ +Q
Sbjct: 204 -LECLYHQNDKQISIKKLSKLTG--ICPQDI--TSTLHHLRMLDFRSDQFVIIRREKLIQ 258
Query: 231 CWEILIYLRLDPVD 244
+ L L PVD
Sbjct: 259 DHMAKLQLNLRPVD 272
>pdb|1MJ9|A Chain A, Crystal Structure Of Yeast Esa1(C304s) Mutant Complexed
With Coenzyme A
Length = 278
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 91 MDQQGDIQHRLLGFTAIYRFYHYPDSTRMRLSQILILPPYQRKGYGGFLTEVLSNVAVAE 150
M ++ ++ H L+G+ + + + ++ IL LP YQR GYG L E ++ E
Sbjct: 119 MTRRDELGHHLVGYFSKEK----ESADGYNVASILTLPQYQRMGYGKLLIEFSYELSKKE 174
Query: 151 N 151
N
Sbjct: 175 N 175
>pdb|2RC4|A Chain A, Crystal Structure Of The Hat Domain Of The Human Moz
Protein
Length = 287
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 118 RMRLSQILILPPYQRKGYGGFLTEVLSNVAVAENVHDFTVEEPLDSFQHVRTCVDIQHLL 177
+ +S I+ILP YQRKGYG FL + S + + E+PL + + ++
Sbjct: 141 KYNVSCIMILPQYQRKGYGRFLID-FSYLLSKREGQAGSPEKPLSDLGRLSYMAYWKSVI 199
Query: 178 AFEPIQHAINSAVSHLKQGKLSKKILAPRFVPPASTVEEVRKVLKINKKQFLQ 230
E + H + +S K KL+ + P+ + ST+ +R +L QF++
Sbjct: 200 -LECLYHQNDKQISIKKLSKLTG--ICPQDI--TSTLHHLR-MLDFRSDQFVR 246
>pdb|3QAH|A Chain A, Crystal Structure Of Apo-Form Human Mof Catalytic Domain
Length = 304
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 114 PDSTRMRLSQILILPPYQRKGYGGFL 139
PD + + IL LPPYQR+GYG FL
Sbjct: 164 PDGNNV--ACILTLPPYQRRGYGKFL 187
>pdb|1MJB|A Chain A, Crystal Structure Of Yeast Esa1 Histone Acetyltransferase
E338q Mutant Complexed With Acetyl Coenzyme A
Length = 278
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 91 MDQQGDIQHRLLGFTAIYRFYHYPDSTRMRLSQILILPPYQRKGYGGFLTEVLSNVAVAE 150
M ++ ++ H L+G+ + + + ++ IL LP YQR GYG L E ++ E
Sbjct: 119 MTRRDELGHHLVGYFSKEK----ESADGYNVAXILTLPQYQRMGYGKLLIEFSYELSKKE 174
Query: 151 N 151
N
Sbjct: 175 N 175
>pdb|1MJA|A Chain A, Crystal Structure Of Yeast Esa1 Histone Acetyltransferase
Domain Complexed With Acetyl Coenzyme A
Length = 278
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 91 MDQQGDIQHRLLGFTAIYRFYHYPDSTRMRLSQILILPPYQRKGYGGFLTEVLSNVAVAE 150
M ++ ++ H L+G+ + + + ++ IL LP YQR GYG L E ++ E
Sbjct: 119 MTRRDELGHHLVGYFSKEK----ESADGYNVAXILTLPQYQRMGYGKLLIEFSYELSKKE 174
Query: 151 N 151
N
Sbjct: 175 N 175
>pdb|1FY7|A Chain A, Crystal Structure Of Yeast Esa1 Histone Acetyltransferase
Domain Complexed With Coenzyme A
Length = 278
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 91 MDQQGDIQHRLLGFTAIYRFYHYPDSTRMRLSQILILPPYQRKGYGGFLTEVLSNVAVAE 150
M ++ ++ H L+G+ + + + ++ IL LP YQR GYG L E ++ E
Sbjct: 119 MTRRDELGHHLVGYFSKEK----ESADGYNVACILTLPQYQRMGYGKLLIEFSYELSKKE 174
Query: 151 N 151
N
Sbjct: 175 N 175
>pdb|3TO6|A Chain A, Crystal Structure Of Yeast Esa1 Hat Domain Complexed With
H4k16coa Bisubstrate Inhibitor
pdb|3TO7|A Chain A, Crystal Structure Of Yeast Esa1 Hat Domain Bound To
Coenzyme A With Active Site Lysine Acetylated
Length = 276
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 91 MDQQGDIQHRLLGFTAIYRFYHYPDSTRMRLSQILILPPYQRKGYGGFLTEVLSNVAVAE 150
M ++ ++ H L+G+ + + + ++ IL LP YQR GYG L E ++ E
Sbjct: 117 MTRRDELGHHLVGYFSKEK----ESADGYNVACILTLPQYQRMGYGKLLIEFSYELSKKE 172
Query: 151 N 151
N
Sbjct: 173 N 173
>pdb|3TO9|A Chain A, Crystal Structure Of Yeast Esa1 E338q Hat Domain Bound To
Coenzyme A With Active Site Lysine Acetylated
Length = 276
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 91 MDQQGDIQHRLLGFTAIYRFYHYPDSTRMRLSQILILPPYQRKGYGGFLTEVLSNVAVAE 150
M ++ ++ H L+G+ + + + ++ IL LP YQR GYG L E ++ E
Sbjct: 117 MTRRDELGHHLVGYFSKEK----ESADGYNVACILTLPQYQRMGYGKLLIEFSYELSKKE 172
Query: 151 N 151
N
Sbjct: 173 N 173
>pdb|4GMO|A Chain A, Crystal Structure Of Syo1
Length = 684
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 156 TVEEPLDSFQHVRT-CVDIQHLLAFEPIQHAINSAVSHLKQGKLSKKILAPRFVPPASTV 214
++EEP D FQ + C+ + LA +P +N V L + VPPA V
Sbjct: 544 SIEEPEDPFQGLGVKCIGVVGSLAHDPAPIEVNREVGVF----LVTLLRQSNNVPPAEIV 599
Query: 215 EEVRKVLKINKKQFLQC 231
E + ++ I + L C
Sbjct: 600 EALNQLFDIYGDEELAC 616
>pdb|4GMN|A Chain A, Structural Basis Of Rpl5 Recognition By Syo1
Length = 676
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 156 TVEEPLDSFQHVRT-CVDIQHLLAFEPIQHAINSAVSHLKQGKLSKKILAPRFVPPASTV 214
++EEP D FQ + C+ + LA +P +N V L + VPPA V
Sbjct: 544 SIEEPEDPFQGLGVKCIGVVGSLAHDPAPIEVNREVGVF----LVTLLRQSNNVPPAEIV 599
Query: 215 EEVRKVLKINKKQFLQC 231
E + ++ I + L C
Sbjct: 600 EALNQLFDIYGDEELAC 616
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Query: 91 MDQQGDIQHRLLGFTAIYRFYHYPDSTRMRLSQILILPPYQRKGYGGFLTEVLSNVAVAE 150
+ Q G ++ R + A + P+S +S + P K LT+ + +AV
Sbjct: 84 IQQNGVVEERSYPYVAREQRCRRPNSQHYGISNYCQIYPPDVKQIREALTQTHTAIAVII 143
Query: 151 NVHDFTVEEPLDSFQHVRTCVDIQHLLAFEPIQHAIN 187
+ D L +FQH IQH ++P HA+N
Sbjct: 144 GIKD------LRAFQHYDGRTIIQHDNGYQPNYHAVN 174
>pdb|2ZC0|A Chain A, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
pdb|2ZC0|B Chain B, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
pdb|2ZC0|C Chain C, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
pdb|2ZC0|D Chain D, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
Length = 407
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 33/171 (19%)
Query: 168 RTCVDIQHLLAFEPIQHAINSAVSHLKQGKLSKKILA--PRFV--PPASTVEEVRKVLKI 223
+ V + L A +P I AV G+++K++L P+ V PA+ + E+R+ L
Sbjct: 31 KKGVKLISLAAGDPDPELIPRAV----LGEIAKEVLEKEPKSVMYTPANGIPELREELA- 85
Query: 224 NKKQFLQCWEILIYLRLDPVDKYMEDYTTIISNRVREDILGK---DSGSTDKRIMDVPSS 280
FL+ ++ +L + P E+ I D+LG+ D G D I + PS
Sbjct: 86 ---AFLKKYD---HLEVSP-----ENIVITIGGTGALDLLGRVLIDPG--DVVITENPSY 132
Query: 281 YDPEMSFVMFKSQNVETSGVQMDENQPSQEEQLKQLVDERIKEIKLIAQKV 331
+ + + F+ + GV +D + + L++E+IKE+K QKV
Sbjct: 133 IN---TLLAFEQLGAKIEGVPVDNDGMRVD-----LLEEKIKELKAKGQKV 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,842,088
Number of Sequences: 62578
Number of extensions: 397039
Number of successful extensions: 871
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 844
Number of HSP's gapped (non-prelim): 29
length of query: 336
length of database: 14,973,337
effective HSP length: 99
effective length of query: 237
effective length of database: 8,778,115
effective search space: 2080413255
effective search space used: 2080413255
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)