Query 019767
Match_columns 336
No_of_seqs 282 out of 812
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 06:47:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019767.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019767hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fq3_A Transcription regulator 100.0 1.2E-42 4.2E-47 285.5 10.7 94 38-131 9-102 (104)
2 2dce_A KIAA1915 protein; swirm 100.0 7.8E-42 2.7E-46 284.2 8.6 93 38-131 11-105 (111)
3 2yus_A SWI/SNF-related matrix- 99.7 7.6E-18 2.6E-22 132.0 9.2 58 211-269 16-73 (79)
4 2elk_A SPCC24B10.08C protein; 99.6 5.1E-15 1.7E-19 109.1 6.5 49 212-260 8-58 (58)
5 1x41_A Transcriptional adaptor 99.5 5.1E-14 1.7E-18 104.3 6.7 51 211-261 6-57 (60)
6 2cqr_A RSGI RUH-043, DNAJ homo 99.4 3E-13 1E-17 104.4 5.0 63 200-263 5-71 (73)
7 1gvd_A MYB proto-oncogene prot 99.3 2E-12 6.8E-17 92.7 5.8 45 213-257 3-48 (52)
8 1guu_A C-MYB, MYB proto-oncoge 99.3 2.3E-12 7.8E-17 92.3 5.5 45 213-257 3-48 (52)
9 2d9a_A B-MYB, MYB-related prot 99.3 5E-12 1.7E-16 93.2 6.4 46 212-257 7-53 (60)
10 1w0t_A Telomeric repeat bindin 99.3 4.1E-12 1.4E-16 91.5 5.8 45 213-257 2-49 (53)
11 2cu7_A KIAA1915 protein; nucle 99.2 9.7E-12 3.3E-16 95.1 6.3 47 211-257 7-53 (72)
12 2yum_A ZZZ3 protein, zinc fing 99.2 4.2E-12 1.4E-16 97.6 4.2 47 211-257 6-58 (75)
13 2dim_A Cell division cycle 5-l 99.2 1.3E-11 4.3E-16 93.8 6.5 46 212-257 8-54 (70)
14 3sjm_A Telomeric repeat-bindin 99.2 1.2E-11 4.2E-16 92.9 5.8 46 212-257 10-58 (64)
15 1ity_A TRF1; helix-turn-helix, 99.2 2.6E-11 8.9E-16 91.9 5.8 46 212-257 9-57 (69)
16 1wgx_A KIAA1903 protein; MYB D 99.1 5.1E-11 1.7E-15 91.9 5.8 45 213-257 8-56 (73)
17 2din_A Cell division cycle 5-l 99.1 1.1E-10 3.7E-15 87.6 5.3 46 211-257 7-52 (66)
18 2llk_A Cyclin-D-binding MYB-li 99.0 3E-10 1E-14 87.6 6.6 46 211-257 21-66 (73)
19 2ltp_A Nuclear receptor corepr 98.6 3E-11 1E-15 96.2 0.0 47 211-257 14-60 (89)
20 2cjj_A Radialis; plant develop 99.0 2.5E-10 8.5E-15 91.9 5.0 46 212-257 7-56 (93)
21 2k9n_A MYB24; R2R3 domain, DNA 99.0 4.2E-10 1.4E-14 91.8 6.3 44 213-256 1-45 (107)
22 2eqr_A N-COR1, N-COR, nuclear 99.0 5.9E-10 2E-14 82.7 6.4 45 212-256 11-55 (61)
23 1gv2_A C-MYB, MYB proto-oncoge 99.0 4.3E-10 1.5E-14 91.1 6.1 46 212-257 3-49 (105)
24 3osg_A MYB21; transcription-DN 98.9 7.3E-10 2.5E-14 93.0 6.0 47 211-257 9-55 (126)
25 2k9n_A MYB24; R2R3 domain, DNA 98.9 1.1E-09 3.8E-14 89.3 5.8 46 212-257 52-97 (107)
26 1h8a_C AMV V-MYB, MYB transfor 98.9 1.7E-09 5.9E-14 90.7 6.9 47 211-257 25-72 (128)
27 1gv2_A C-MYB, MYB proto-oncoge 98.9 9.9E-10 3.4E-14 89.0 5.1 46 212-257 55-100 (105)
28 3zqc_A MYB3; transcription-DNA 98.9 8.1E-10 2.8E-14 93.2 4.4 45 213-257 2-47 (131)
29 2ckx_A NGTRF1, telomere bindin 98.9 1.5E-09 5.2E-14 85.6 5.6 44 214-257 1-49 (83)
30 3osg_A MYB21; transcription-DN 98.9 1.2E-09 4.2E-14 91.6 5.1 46 212-257 61-106 (126)
31 2iw5_B Protein corest, REST co 98.9 2.4E-09 8.2E-14 98.4 6.9 47 211-257 131-177 (235)
32 1h8a_C AMV V-MYB, MYB transfor 98.8 2.9E-09 9.9E-14 89.3 6.2 46 212-257 78-123 (128)
33 3zqc_A MYB3; transcription-DNA 98.8 3.3E-09 1.1E-13 89.5 5.5 46 212-257 53-98 (131)
34 4gut_A Lysine-specific histone 98.7 3.4E-08 1.2E-12 105.0 10.3 90 36-131 213-321 (776)
35 2roh_A RTBP1, telomere binding 98.7 1.7E-08 5.7E-13 85.0 5.9 46 212-257 30-80 (122)
36 2aje_A Telomere repeat-binding 98.7 1.5E-08 5.3E-13 83.1 4.8 46 212-257 12-62 (105)
37 1h89_C C-MYB, MYB proto-oncoge 98.7 2.4E-08 8.2E-13 86.5 6.2 46 212-257 57-103 (159)
38 2z3y_A Lysine-specific histone 98.7 1.9E-08 6.3E-13 104.6 6.3 85 45-131 8-96 (662)
39 1h89_C C-MYB, MYB proto-oncoge 98.7 2.4E-08 8.2E-13 86.6 6.0 46 212-257 109-154 (159)
40 2cqq_A RSGI RUH-037, DNAJ homo 98.6 3.1E-08 1E-12 76.1 5.0 50 212-263 7-60 (72)
41 2yqk_A Arginine-glutamic acid 98.6 7.1E-08 2.4E-12 72.0 6.7 44 212-255 8-52 (63)
42 2juh_A Telomere binding protei 98.6 2.5E-08 8.5E-13 83.8 4.4 46 212-257 16-66 (121)
43 2xag_B REST corepressor 1; ami 98.6 6.4E-08 2.2E-12 97.7 6.8 46 211-256 378-423 (482)
44 2crg_A Metastasis associated p 98.4 2.7E-07 9.4E-12 70.3 5.9 51 213-263 8-59 (70)
45 1x58_A Hypothetical protein 49 98.4 1.9E-07 6.5E-12 69.7 4.7 46 212-257 7-55 (62)
46 4eef_G F-HB80.4, designed hema 98.4 3.2E-08 1.1E-12 76.1 -0.1 43 213-255 20-66 (74)
47 4a69_C Nuclear receptor corepr 98.3 5.8E-07 2E-11 72.2 5.9 44 213-256 43-86 (94)
48 1ign_A Protein (RAP1); RAP1,ye 98.2 7.8E-07 2.7E-11 82.4 4.2 46 212-257 7-58 (246)
49 2xag_A Lysine-specific histone 97.9 1.5E-05 5.1E-10 85.7 7.0 86 44-131 178-267 (852)
50 3hm5_A DNA methyltransferase 1 97.4 0.00021 7.2E-09 57.3 5.4 43 214-256 31-78 (93)
51 1ug2_A 2610100B20RIK gene prod 97.3 0.00028 9.7E-09 56.2 5.3 44 214-257 34-80 (95)
52 1fex_A TRF2-interacting telome 97.2 0.00021 7.2E-09 52.5 3.7 44 213-256 2-55 (59)
53 2ebi_A DNA binding protein GT- 96.9 0.00046 1.6E-08 53.7 3.0 45 213-257 4-62 (86)
54 2lr8_A CAsp8-associated protei 95.7 0.00025 8.7E-09 53.6 0.0 43 214-257 15-60 (70)
55 2cuj_A Transcriptional adaptor 96.5 0.0071 2.4E-07 49.6 7.6 70 50-127 37-106 (108)
56 2aqe_A Transcriptional adaptor 96.5 0.006 2E-07 48.4 6.5 70 50-127 19-88 (90)
57 1ofc_X ISWI protein; nuclear p 96.4 0.0029 1E-07 60.5 5.1 41 214-254 111-152 (304)
58 2elj_A Transcriptional adapter 96.3 0.01 3.5E-07 46.8 7.0 70 50-126 19-88 (88)
59 2e5r_A Dystrobrevin alpha; ZZ 96.2 0.0034 1.2E-07 46.6 3.4 47 161-207 12-61 (63)
60 2xag_B REST corepressor 1; ami 96.1 0.00099 3.4E-08 67.3 0.0 46 213-258 189-234 (482)
61 4iej_A DNA methyltransferase 1 96.0 0.013 4.4E-07 46.9 6.0 44 213-256 30-78 (93)
62 2dip_A Zinc finger SWIM domain 95.4 0.0034 1.2E-07 50.6 0.8 54 160-220 31-86 (98)
63 4b4c_A Chromodomain-helicase-D 94.8 0.021 7.1E-07 50.8 4.0 29 213-241 134-163 (211)
64 1irz_A ARR10-B; helix-turn-hel 94.7 0.052 1.8E-06 40.5 5.4 45 213-257 7-56 (64)
65 2fc7_A ZZZ3 protein; structure 94.7 0.034 1.2E-06 43.3 4.5 50 160-209 21-76 (82)
66 2xb0_X Chromo domain-containin 94.5 0.024 8.3E-07 53.3 4.0 30 212-241 167-197 (270)
67 1tot_A CREB-binding protein; z 93.4 0.02 6.7E-07 40.9 0.7 42 160-207 6-48 (52)
68 4b4c_A Chromodomain-helicase-D 92.6 0.12 4.1E-06 45.8 4.9 41 213-253 7-52 (211)
69 1ofc_X ISWI protein; nuclear p 91.7 0.14 4.6E-06 49.0 4.3 47 212-258 211-273 (304)
70 2y9y_A Imitation switch protei 89.5 0.37 1.3E-05 47.3 5.2 42 214-256 124-167 (374)
71 2y9y_A Imitation switch protei 82.4 1.4 4.7E-05 43.2 5.1 46 213-258 228-289 (374)
72 1ign_A Protein (RAP1); RAP1,ye 78.1 3.1 0.00011 38.5 5.6 24 234-257 173-196 (246)
73 2fu4_A Ferric uptake regulatio 67.9 4.6 0.00016 29.7 3.5 47 82-128 19-70 (83)
74 2xb0_X Chromo domain-containin 66.5 7.3 0.00025 36.4 5.3 42 213-254 3-49 (270)
75 2heo_A Z-DNA binding protein 1 65.5 8.1 0.00028 27.9 4.4 52 75-127 5-56 (67)
76 1mzb_A Ferric uptake regulatio 63.3 9.3 0.00032 31.2 4.9 47 82-128 20-71 (136)
77 3e7l_A Transcriptional regulat 63.2 6.9 0.00024 27.8 3.6 26 219-244 19-44 (63)
78 2o03_A Probable zinc uptake re 61.0 13 0.00045 30.0 5.4 51 77-128 8-63 (131)
79 2d8v_A Zinc finger FYVE domain 60.8 5.2 0.00018 29.9 2.6 46 159-206 7-52 (67)
80 2xig_A Ferric uptake regulatio 54.4 17 0.00059 30.1 5.2 48 79-127 26-78 (150)
81 2w57_A Ferric uptake regulatio 53.7 11 0.00038 31.4 3.8 47 82-128 19-70 (150)
82 2fe3_A Peroxide operon regulat 51.3 21 0.00071 29.4 5.1 46 82-128 24-74 (145)
83 2htj_A P fimbrial regulatory p 50.6 25 0.00087 25.6 5.0 46 82-129 2-47 (81)
84 3mwm_A ZUR, putative metal upt 47.9 22 0.00077 29.1 4.8 50 77-127 11-65 (139)
85 3eyy_A Putative iron uptake re 45.3 21 0.00072 29.4 4.2 45 82-128 21-70 (145)
86 4ets_A Ferric uptake regulatio 42.7 28 0.00096 29.3 4.7 46 82-128 35-87 (162)
87 1weo_A Cellulose synthase, cat 41.5 15 0.0005 29.1 2.4 33 158-190 14-51 (93)
88 1umq_A Photosynthetic apparatu 41.3 24 0.00081 26.9 3.6 29 216-244 38-66 (81)
89 3r0a_A Putative transcriptiona 40.7 52 0.0018 26.1 5.8 47 83-129 29-75 (123)
90 2li6_A SWI/SNF chromatin-remod 39.2 21 0.00071 28.7 3.2 42 222-264 52-103 (116)
91 2k4b_A Transcriptional regulat 38.3 46 0.0016 25.9 5.0 41 86-129 42-86 (99)
92 4ham_A LMO2241 protein; struct 37.1 42 0.0014 27.0 4.7 55 76-131 18-73 (134)
93 2jxj_A Histone demethylase jar 37.0 38 0.0013 25.9 4.3 36 222-257 39-86 (96)
94 3tqn_A Transcriptional regulat 36.9 44 0.0015 26.1 4.7 55 75-130 12-67 (113)
95 1ntc_A Protein (nitrogen regul 36.2 25 0.00084 26.7 3.0 27 218-244 50-76 (91)
96 2jrz_A Histone demethylase jar 35.9 50 0.0017 26.5 5.0 37 221-257 42-90 (117)
97 1oyi_A Double-stranded RNA-bin 34.8 65 0.0022 24.6 5.2 52 80-134 17-68 (82)
98 2d1h_A ST1889, 109AA long hypo 34.1 72 0.0024 23.4 5.4 37 95-131 35-71 (109)
99 1qgp_A Protein (double strande 33.2 69 0.0024 23.6 5.0 58 79-137 13-71 (77)
100 1bja_A Transcription regulator 33.0 52 0.0018 25.9 4.4 36 90-127 26-62 (95)
101 2ek5_A Predicted transcription 32.4 48 0.0016 26.8 4.3 55 75-130 7-62 (129)
102 2pjp_A Selenocysteine-specific 32.2 76 0.0026 25.1 5.5 51 74-126 60-110 (121)
103 3by6_A Predicted transcription 31.7 37 0.0013 27.3 3.5 54 75-129 14-68 (126)
104 2vn2_A DNAD, chromosome replic 31.6 55 0.0019 26.2 4.6 40 92-131 47-86 (128)
105 2k02_A Ferrous iron transport 30.4 83 0.0028 24.2 5.1 42 84-127 6-47 (87)
106 2kj8_A Putative prophage CPS-5 30.4 57 0.002 24.6 4.3 57 74-130 23-95 (118)
107 3i4p_A Transcriptional regulat 30.3 35 0.0012 28.3 3.3 38 219-257 3-41 (162)
108 3e3v_A Regulatory protein RECX 30.1 92 0.0031 26.5 6.0 54 74-130 13-69 (177)
109 2cxy_A BAF250B subunit, HBAF25 29.9 52 0.0018 26.6 4.2 43 221-263 53-109 (125)
110 1qbj_A Protein (double-strande 29.5 83 0.0028 23.6 4.9 55 82-137 12-67 (81)
111 2hzd_A Transcriptional enhance 28.7 52 0.0018 25.4 3.6 21 212-232 5-25 (82)
112 1xn7_A Hypothetical protein YH 28.7 86 0.0029 23.4 4.9 41 84-126 6-46 (78)
113 2jt1_A PEFI protein; solution 28.4 1.2E+02 0.004 22.6 5.5 55 75-129 3-57 (77)
114 2x4h_A Hypothetical protein SS 28.2 1E+02 0.0035 24.0 5.6 53 74-129 12-64 (139)
115 2oqg_A Possible transcriptiona 28.1 1.1E+02 0.0036 23.0 5.5 47 81-130 22-68 (114)
116 1v5n_A PDI-like hypothetical p 27.7 28 0.00095 26.8 2.0 32 160-191 47-78 (89)
117 2lm1_A Lysine-specific demethy 27.7 66 0.0023 25.1 4.3 36 221-256 46-93 (107)
118 3eco_A MEPR; mutlidrug efflux 27.6 88 0.003 24.1 5.1 43 89-131 40-82 (139)
119 1eto_A FIS, factor for inversi 27.5 53 0.0018 25.6 3.6 27 218-244 57-83 (98)
120 1ngr_A P75 low affinity neurot 27.0 17 0.00059 27.7 0.6 23 217-244 11-33 (85)
121 3bro_A Transcriptional regulat 27.0 88 0.003 24.0 5.0 41 91-131 45-85 (141)
122 3neu_A LIN1836 protein; struct 26.6 67 0.0023 25.5 4.2 55 75-130 16-71 (125)
123 2eqy_A RBP2 like, jumonji, at 26.0 91 0.0031 25.1 4.9 41 221-261 44-98 (122)
124 3c7j_A Transcriptional regulat 25.6 30 0.001 30.7 2.1 59 72-131 26-84 (237)
125 3cuo_A Uncharacterized HTH-typ 25.6 1.1E+02 0.0037 22.2 5.0 49 81-131 25-73 (99)
126 1v4r_A Transcriptional repress 25.1 28 0.00095 26.5 1.5 56 73-129 12-68 (102)
127 2dk5_A DNA-directed RNA polyme 24.8 87 0.003 23.9 4.4 35 93-127 33-67 (91)
128 1g2h_A Transcriptional regulat 24.6 97 0.0033 21.6 4.3 29 215-244 17-45 (61)
129 1cf7_A Protein (transcription 24.5 1.1E+02 0.0039 22.8 4.8 44 84-127 18-62 (76)
130 3dpt_A ROCO, RAB family protei 24.2 50 0.0017 31.3 3.4 58 72-131 12-73 (332)
131 2b0l_A GTP-sensing transcripti 24.1 50 0.0017 25.7 2.9 67 55-130 8-77 (102)
132 2qvo_A Uncharacterized protein 23.8 95 0.0032 23.0 4.4 34 93-126 27-60 (95)
133 1y0u_A Arsenical resistance op 23.3 97 0.0033 22.9 4.4 45 81-129 32-76 (96)
134 2rq5_A Protein jumonji; develo 23.3 95 0.0032 25.3 4.5 37 221-257 44-93 (121)
135 1kkx_A Transcription regulator 23.2 49 0.0017 27.0 2.7 42 222-264 51-102 (123)
136 1c20_A DEAD ringer protein; DN 23.1 66 0.0022 26.1 3.5 36 221-256 54-102 (128)
137 4b8x_A SCO5413, possible MARR- 22.8 88 0.003 25.0 4.3 41 91-131 46-86 (147)
138 2olm_A Nucleoporin-like protei 22.6 65 0.0022 26.9 3.5 56 161-225 26-81 (140)
139 2kj5_A Phage integrase; GFT PS 22.6 43 0.0015 24.9 2.2 22 110-131 76-97 (116)
140 2y75_A HTH-type transcriptiona 22.5 1.1E+02 0.0038 23.9 4.8 40 90-129 20-59 (129)
141 1sd4_A Penicillinase repressor 21.7 99 0.0034 23.7 4.3 45 84-131 15-63 (126)
142 1sfx_A Conserved hypothetical 21.6 1.3E+02 0.0046 21.7 4.9 35 96-130 34-68 (109)
143 2e1c_A Putative HTH-type trans 21.5 87 0.003 26.3 4.1 39 218-257 26-65 (171)
144 2frh_A SARA, staphylococcal ac 21.4 1.5E+02 0.0052 22.9 5.4 40 92-131 49-88 (127)
145 3c1d_A Protein ORAA, regulator 20.7 1.7E+02 0.0057 24.3 5.7 51 77-130 3-66 (159)
No 1
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=100.00 E-value=1.2e-42 Score=285.54 Aligned_cols=94 Identities=44% Similarity=0.814 Sum_probs=84.7
Q ss_pred ceeecCCCCCCCCCCCCCHHHHhhCccccCCCCCCCChHHHHHHHHHHHHHHHhCCCcceeHHHHHHhccchHHHHHHHH
Q 019767 38 DVVNVPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVF 117 (336)
Q Consensus 38 ~~ivIPs~s~WF~~~~ih~iE~~~lpEff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rih 117 (336)
|+=..|+++.||++++||++|+++|||||+|++++|||++|++|||+||++||+||.+|||+|+||++|+|||++|+|||
T Consensus 9 ~~~~~p~~s~wF~~~~Ih~iEk~~lPEfF~g~~~~ktpe~Yl~iRN~iI~~yr~nP~~yLT~t~~r~~l~gDv~~i~RVh 88 (104)
T 2fq3_A 9 HHGMASSYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSGDAAALFRLH 88 (104)
T ss_dssp --------CTTCCTTCCCHHHHHHCGGGCCSSCTTSCHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHSCSCHHHHHHHH
T ss_pred cCCCCCCcccccCcccCCHHHHHHChHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCceeeeHHHHHHHccccHHHHHHHH
Confidence 34467999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcccccCCCC
Q 019767 118 DFLETWGLINYFAS 131 (336)
Q Consensus 118 ~FLe~wGlINy~~~ 131 (336)
+|||+|||||||++
T Consensus 89 ~FLe~wGLIN~~v~ 102 (104)
T 2fq3_A 89 KFLTKWGLINYQVD 102 (104)
T ss_dssp HHHHHTTSSSSCC-
T ss_pred HHHHHcCeeccCCC
Confidence 99999999999998
No 2
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=7.8e-42 Score=284.21 Aligned_cols=93 Identities=30% Similarity=0.468 Sum_probs=90.8
Q ss_pred ceeecCCCCCCCCCCCCCHHHHhhCccccCCCCCCCChHHHHHHHHHHHHHHHhCCCcceeHHHHHHhc--cchHHHHHH
Q 019767 38 DVVNVPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTL--VGDVGSIRR 115 (336)
Q Consensus 38 ~~ivIPs~s~WF~~~~ih~iE~~~lpEff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l--~gDv~~i~R 115 (336)
.+++||+|+.||++++||+||+++|||||+|+ ++|||++||+|||+||++||+||.+|||+|+|||+| .|||++|+|
T Consensus 11 ~~~~iP~~~~wf~~~~ih~iEk~~lPefF~g~-~~ktpe~Yl~iRN~iI~~yr~np~~yLT~t~~rr~L~~~gDv~~i~R 89 (111)
T 2dce_A 11 EELKPPEQEIEIDRNIIQEEEKQAIPEFFEGR-QAKTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNCGDVNCIGR 89 (111)
T ss_dssp CSCCCCSSCCCCCSSCCCHHHHTTSGGGGSCC-SSCCHHHHHHHHHHHHHHHHHHTTSCCCGGGTTTTTSSSSCHHHHHH
T ss_pred cCCcCCCcccccCcccCCHHHHHhChHHhcCC-cccCHHHHHHHHHHHHHHHHhCCcceeeHHHHHHhcccccCHHHHHH
Confidence 57999999999999999999999999999998 799999999999999999999999999999999999 599999999
Q ss_pred HHHhhhhcccccCCCC
Q 019767 116 VFDFLETWGLINYFAS 131 (336)
Q Consensus 116 ih~FLe~wGlINy~~~ 131 (336)
||+|||+|||||||++
T Consensus 90 Vh~FLe~wGLIN~~~~ 105 (111)
T 2dce_A 90 IHTYLELIGAINFGCE 105 (111)
T ss_dssp HHHHHHHHSSSSCSCT
T ss_pred HHHHHHHcCeeecCCC
Confidence 9999999999999998
No 3
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.73 E-value=7.6e-18 Score=131.98 Aligned_cols=58 Identities=45% Similarity=0.955 Sum_probs=53.8
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcCCCCCcccCCCCC
Q 019767 211 EARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICKESD 269 (336)
Q Consensus 211 ~~~~~WT~eE~~~LLeav~~yG~nW~~IA~~VgtrT~~qC~~hf~~lPIeD~fl~~~~~ 269 (336)
..+..||++|+.+||+||++||++|.+||++||+||.+||+.||+++||+|+|+ .+.+
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~-~~~~ 73 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYL-ENSD 73 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTSCCCCSSC-CCCC
T ss_pred ccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhccccccc-ccCC
Confidence 456899999999999999999999999999999999999999999999999999 4433
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.55 E-value=5.1e-15 Score=109.10 Aligned_cols=49 Identities=24% Similarity=0.630 Sum_probs=46.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhC-CCCHHHHHHHHhcCCCC
Q 019767 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHVS-GKSEKDCITHFIKLPFG 260 (336)
Q Consensus 212 ~~~~WT~eE~~~LLeav~~yG-~nW~~IA~~Vg-trT~~qC~~hf~~lPIe 260 (336)
.+..||++||.+|+++|++|| +||.+||++|| +||+.||+.||.+++|.
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~~ 58 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYIE 58 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHccC
Confidence 467899999999999999999 99999999999 99999999999998873
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.48 E-value=5.1e-14 Score=104.25 Aligned_cols=51 Identities=33% Similarity=0.754 Sum_probs=46.9
Q ss_pred ccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhCCCCHHHHHHHHhcCCCCC
Q 019767 211 EARSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIKLPFGQ 261 (336)
Q Consensus 211 ~~~~~WT~eE~~~LLeav~~yG-~nW~~IA~~VgtrT~~qC~~hf~~lPIeD 261 (336)
..+..||.+||.+|+++|++|| ++|.+||++|++||..||+.||.++.+..
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 3567899999999999999999 89999999999999999999999876654
No 6
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.38 E-value=3e-13 Score=104.39 Aligned_cols=63 Identities=32% Similarity=0.482 Sum_probs=54.3
Q ss_pred CCCceecccCcccCCCCCHHHHHHHHHHHHHhC----CCHHHHHHHhCCCCHHHHHHHHhcCCCCCcc
Q 019767 200 SSDFRRVEISEEARSDWTEKETLQLLEAIMHFG----DDWRKVAQHVSGKSEKDCITHFIKLPFGQEF 263 (336)
Q Consensus 200 s~df~ki~~~~~~~~~WT~eE~~~LLeav~~yG----~nW~~IA~~VgtrT~~qC~~hf~~lPIeD~f 263 (336)
..++.+.+.+...+..||.+|+.+|++||.+|| ++|.+||++|++||..||+.||..| ++|+.
T Consensus 5 ~~~~~~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L-~~d~~ 71 (73)
T 2cqr_A 5 SSGSLRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL-VSGPS 71 (73)
T ss_dssp SSSCCCCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH-HSSCC
T ss_pred ccccccccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH-HHccc
Confidence 456666666666788999999999999999999 6899999999999999999999986 56554
No 7
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.31 E-value=2e-12 Score=92.69 Aligned_cols=45 Identities=24% Similarity=0.699 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhCCCCHHHHHHHHhcC
Q 019767 213 RSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIKL 257 (336)
Q Consensus 213 ~~~WT~eE~~~LLeav~~yG-~nW~~IA~~VgtrT~~qC~~hf~~l 257 (336)
++.||.+|+.+|+++|++|| ++|..||+++++||..||+.||.++
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHH
Confidence 57899999999999999999 5899999999999999999999874
No 8
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.30 E-value=2.3e-12 Score=92.29 Aligned_cols=45 Identities=22% Similarity=0.604 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-CHHHHHHHhCCCCHHHHHHHHhcC
Q 019767 213 RSDWTEKETLQLLEAIMHFGD-DWRKVAQHVSGKSEKDCITHFIKL 257 (336)
Q Consensus 213 ~~~WT~eE~~~LLeav~~yG~-nW~~IA~~VgtrT~~qC~~hf~~l 257 (336)
++.||.+|+.+|+++|++||. +|..||++|++||..||+.||.++
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 578999999999999999995 999999999999999999999873
No 9
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.28 E-value=5e-12 Score=93.17 Aligned_cols=46 Identities=26% Similarity=0.727 Sum_probs=43.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhCCCCHHHHHHHHhcC
Q 019767 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIKL 257 (336)
Q Consensus 212 ~~~~WT~eE~~~LLeav~~yG-~nW~~IA~~VgtrT~~qC~~hf~~l 257 (336)
.+..||.+||.+|+++|++|| ++|..||++|++||..||+.||.++
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHH
Confidence 467899999999999999999 7999999999999999999999874
No 10
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.28 E-value=4.1e-12 Score=91.52 Aligned_cols=45 Identities=18% Similarity=0.437 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhC--CCCHHHHHHHHhcC
Q 019767 213 RSDWTEKETLQLLEAIMHFG-DDWRKVAQHVS--GKSEKDCITHFIKL 257 (336)
Q Consensus 213 ~~~WT~eE~~~LLeav~~yG-~nW~~IA~~Vg--trT~~qC~~hf~~l 257 (336)
++.||.+||.+|+++|++|| ++|..||++++ +||..||+.||.++
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 46899999999999999999 89999999999 99999999999864
No 11
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.24 E-value=9.7e-12 Score=95.05 Aligned_cols=47 Identities=15% Similarity=0.341 Sum_probs=44.1
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 019767 211 EARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKL 257 (336)
Q Consensus 211 ~~~~~WT~eE~~~LLeav~~yG~nW~~IA~~VgtrT~~qC~~hf~~l 257 (336)
..++.||.+|+.+|+++|++||.+|..||++|++||..||+.||..+
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~ 53 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQY 53 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34679999999999999999999999999999999999999999874
No 12
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=4.2e-12 Score=97.59 Aligned_cols=47 Identities=19% Similarity=0.473 Sum_probs=43.4
Q ss_pred ccCCCCCHHHHHHHHHHHHHhC------CCHHHHHHHhCCCCHHHHHHHHhcC
Q 019767 211 EARSDWTEKETLQLLEAIMHFG------DDWRKVAQHVSGKSEKDCITHFIKL 257 (336)
Q Consensus 211 ~~~~~WT~eE~~~LLeav~~yG------~nW~~IA~~VgtrT~~qC~~hf~~l 257 (336)
..+..||.+|+.+|+++|++|| ++|..||++|++||..||+.||.++
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~ 58 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKY 58 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3467899999999999999999 7899999999999999999999753
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=1.3e-11 Score=93.77 Aligned_cols=46 Identities=26% Similarity=0.593 Sum_probs=43.5
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhCCCCHHHHHHHHhcC
Q 019767 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIKL 257 (336)
Q Consensus 212 ~~~~WT~eE~~~LLeav~~yG-~nW~~IA~~VgtrT~~qC~~hf~~l 257 (336)
.++.||.+|+.+|+++|++|| ++|..||++|++||..||+.||.++
T Consensus 8 k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 8 KGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEW 54 (70)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 457899999999999999999 8999999999999999999999984
No 14
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.22 E-value=1.2e-11 Score=92.92 Aligned_cols=46 Identities=11% Similarity=0.409 Sum_probs=42.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhC--CCCHHHHHHHHhcC
Q 019767 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHVS--GKSEKDCITHFIKL 257 (336)
Q Consensus 212 ~~~~WT~eE~~~LLeav~~yG-~nW~~IA~~Vg--trT~~qC~~hf~~l 257 (336)
.+..||.+||.+|+++|++|| ++|..||++++ +||..||+.||.+|
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl 58 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTM 58 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 357899999999999999999 79999999977 89999999999764
No 15
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.17 E-value=2.6e-11 Score=91.86 Aligned_cols=46 Identities=17% Similarity=0.424 Sum_probs=43.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhC--CCCHHHHHHHHhcC
Q 019767 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHVS--GKSEKDCITHFIKL 257 (336)
Q Consensus 212 ~~~~WT~eE~~~LLeav~~yG-~nW~~IA~~Vg--trT~~qC~~hf~~l 257 (336)
.+..||.+|+.+|+++|++|| ++|..||++++ +||..||+.||.++
T Consensus 9 ~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 57 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM 57 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 467899999999999999999 89999999999 99999999999974
No 16
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.13 E-value=5.1e-11 Score=91.89 Aligned_cols=45 Identities=27% Similarity=0.535 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHHhC----CCHHHHHHHhCCCCHHHHHHHHhcC
Q 019767 213 RSDWTEKETLQLLEAIMHFG----DDWRKVAQHVSGKSEKDCITHFIKL 257 (336)
Q Consensus 213 ~~~WT~eE~~~LLeav~~yG----~nW~~IA~~VgtrT~~qC~~hf~~l 257 (336)
...||.+|+.+|.+||..|+ ++|++||++||+||.+||+.||..|
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 46899999999999999998 5799999999999999999999998
No 17
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=1.1e-10 Score=87.62 Aligned_cols=46 Identities=24% Similarity=0.645 Sum_probs=41.8
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 019767 211 EARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKL 257 (336)
Q Consensus 211 ~~~~~WT~eE~~~LLeav~~yG~nW~~IA~~VgtrT~~qC~~hf~~l 257 (336)
..+..||.+|+.+|+++++.||.+|.+||+.+ +||..||+.||..+
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~-gRt~~qcr~Rw~~~ 52 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHYEFL 52 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTTCHHHHHHHH-SSCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHhccc-CcCHHHHHHHHHHH
Confidence 34678999999999999999999999999955 59999999999974
No 18
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.04 E-value=3e-10 Score=87.58 Aligned_cols=46 Identities=20% Similarity=0.382 Sum_probs=43.2
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 019767 211 EARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKL 257 (336)
Q Consensus 211 ~~~~~WT~eE~~~LLeav~~yG~nW~~IA~~VgtrT~~qC~~hf~~l 257 (336)
..++.||.+||.+|++++++||.+|..||+++ +||..||+.||..|
T Consensus 21 i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 21 NHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 45789999999999999999999999999999 99999999999875
No 19
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.58 E-value=3e-11 Score=96.23 Aligned_cols=47 Identities=21% Similarity=0.490 Sum_probs=44.0
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 019767 211 EARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKL 257 (336)
Q Consensus 211 ~~~~~WT~eE~~~LLeav~~yG~nW~~IA~~VgtrT~~qC~~hf~~l 257 (336)
...+.||.+|+.+|+++|++||.+|..||++|++||..||+.||..+
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~ 60 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNY 60 (89)
Confidence 34679999999999999999999999999999999999999999864
No 20
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.01 E-value=2.5e-10 Score=91.89 Aligned_cols=46 Identities=26% Similarity=0.570 Sum_probs=42.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhC----CCHHHHHHHhCCCCHHHHHHHHhcC
Q 019767 212 ARSDWTEKETLQLLEAIMHFG----DDWRKVAQHVSGKSEKDCITHFIKL 257 (336)
Q Consensus 212 ~~~~WT~eE~~~LLeav~~yG----~nW~~IA~~VgtrT~~qC~~hf~~l 257 (336)
.+..||.+|+.+|++||.+|| +.|.+||++|++||.+||+.||..|
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l 56 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEIL 56 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH
Confidence 357899999999999999997 5699999999999999999999986
No 21
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.00 E-value=4.2e-10 Score=91.82 Aligned_cols=44 Identities=25% Similarity=0.653 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhCCCCHHHHHHHHhc
Q 019767 213 RSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIK 256 (336)
Q Consensus 213 ~~~WT~eE~~~LLeav~~yG-~nW~~IA~~VgtrT~~qC~~hf~~ 256 (336)
++.||.+|+.+|+++|++|| ++|..||++|++||..||+.||.+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 45 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNN 45 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHH
Confidence 46899999999999999999 699999999999999999999987
No 22
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=5.9e-10 Score=82.70 Aligned_cols=45 Identities=18% Similarity=0.349 Sum_probs=42.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhc
Q 019767 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIK 256 (336)
Q Consensus 212 ~~~~WT~eE~~~LLeav~~yG~nW~~IA~~VgtrT~~qC~~hf~~ 256 (336)
....||++|..++++++.+||.+|..||++|++||..||+.||..
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYL 55 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 347899999999999999999999999999999999999999864
No 23
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.99 E-value=4.3e-10 Score=91.09 Aligned_cols=46 Identities=22% Similarity=0.662 Sum_probs=43.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhCCCCHHHHHHHHhcC
Q 019767 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIKL 257 (336)
Q Consensus 212 ~~~~WT~eE~~~LLeav~~yG-~nW~~IA~~VgtrT~~qC~~hf~~l 257 (336)
.++.||.+|+.+|+++|++|| ++|..||++|++||..||+.||.++
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 49 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhc
Confidence 467899999999999999999 5899999999999999999999984
No 24
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.95 E-value=7.3e-10 Score=92.99 Aligned_cols=47 Identities=19% Similarity=0.499 Sum_probs=44.1
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 019767 211 EARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKL 257 (336)
Q Consensus 211 ~~~~~WT~eE~~~LLeav~~yG~nW~~IA~~VgtrT~~qC~~hf~~l 257 (336)
..++.||.+|+.+|+++|++||.+|..||+++++||..||+.||.++
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 55 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNY 55 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhh
Confidence 34688999999999999999999999999999999999999999973
No 25
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.92 E-value=1.1e-09 Score=89.34 Aligned_cols=46 Identities=15% Similarity=0.532 Sum_probs=43.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 019767 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKL 257 (336)
Q Consensus 212 ~~~~WT~eE~~~LLeav~~yG~nW~~IA~~VgtrT~~qC~~hf~~l 257 (336)
.++.||.+|+.+|++++.+||.+|..||++|++||..||+.||..+
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l 97 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMI 97 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999999999999999999999999864
No 26
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.91 E-value=1.7e-09 Score=90.69 Aligned_cols=47 Identities=23% Similarity=0.667 Sum_probs=43.6
Q ss_pred ccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhCCCCHHHHHHHHhcC
Q 019767 211 EARSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIKL 257 (336)
Q Consensus 211 ~~~~~WT~eE~~~LLeav~~yG-~nW~~IA~~VgtrT~~qC~~hf~~l 257 (336)
..++.||.+|+.+|+++|++|| ++|.+||++|++||..||+.||.++
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 72 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNH 72 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHh
Confidence 3468899999999999999999 6899999999999999999999983
No 27
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.91 E-value=9.9e-10 Score=88.97 Aligned_cols=46 Identities=22% Similarity=0.571 Sum_probs=43.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 019767 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKL 257 (336)
Q Consensus 212 ~~~~WT~eE~~~LLeav~~yG~nW~~IA~~VgtrT~~qC~~hf~~l 257 (336)
.++.||.+|+.+|++++.+||.+|..||++|++||..||+.||..+
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999763
No 28
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.90 E-value=8.1e-10 Score=93.24 Aligned_cols=45 Identities=20% Similarity=0.478 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhCCCCHHHHHHHHhcC
Q 019767 213 RSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIKL 257 (336)
Q Consensus 213 ~~~WT~eE~~~LLeav~~yG-~nW~~IA~~VgtrT~~qC~~hf~~l 257 (336)
++.||.+||.+|+++|++|| ++|..||++|++||..||+.||.++
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 47 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNH 47 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhc
Confidence 57899999999999999999 8999999999999999999999873
No 29
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.89 E-value=1.5e-09 Score=85.56 Aligned_cols=44 Identities=25% Similarity=0.441 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHHHhC-CCHHHHHHH----hCCCCHHHHHHHHhcC
Q 019767 214 SDWTEKETLQLLEAIMHFG-DDWRKVAQH----VSGKSEKDCITHFIKL 257 (336)
Q Consensus 214 ~~WT~eE~~~LLeav~~yG-~nW~~IA~~----VgtrT~~qC~~hf~~l 257 (336)
+.||.+|+..|+++|++|| |+|.+|++. +.+||..+|+.||.++
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnl 49 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTL 49 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHH
Confidence 4799999999999999999 799999996 7899999999999885
No 30
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.89 E-value=1.2e-09 Score=91.61 Aligned_cols=46 Identities=20% Similarity=0.596 Sum_probs=43.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 019767 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKL 257 (336)
Q Consensus 212 ~~~~WT~eE~~~LLeav~~yG~nW~~IA~~VgtrT~~qC~~hf~~l 257 (336)
.++.||.+|+.+|+++|++||.+|..||++|++||..||+.||..+
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l 106 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTI 106 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999773
No 31
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.87 E-value=2.4e-09 Score=98.36 Aligned_cols=47 Identities=23% Similarity=0.525 Sum_probs=44.0
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 019767 211 EARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKL 257 (336)
Q Consensus 211 ~~~~~WT~eE~~~LLeav~~yG~nW~~IA~~VgtrT~~qC~~hf~~l 257 (336)
.....||++|..++++|+.+||.||..||++||+||..||+.||...
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~ 177 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY 177 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999864
No 32
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.85 E-value=2.9e-09 Score=89.29 Aligned_cols=46 Identities=22% Similarity=0.579 Sum_probs=43.5
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 019767 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKL 257 (336)
Q Consensus 212 ~~~~WT~eE~~~LLeav~~yG~nW~~IA~~VgtrT~~qC~~hf~~l 257 (336)
.++.||.+|+.+|++++.+||.+|..||++|++||..||+.||..+
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999875
No 33
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.82 E-value=3.3e-09 Score=89.46 Aligned_cols=46 Identities=15% Similarity=0.503 Sum_probs=43.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 019767 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKL 257 (336)
Q Consensus 212 ~~~~WT~eE~~~LLeav~~yG~nW~~IA~~VgtrT~~qC~~hf~~l 257 (336)
.++.||.+|+.+|++++.+||.+|..||++|++||..||+.||..+
T Consensus 53 ~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~ 98 (131)
T 3zqc_A 53 VKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSS 98 (131)
T ss_dssp CCSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999885
No 34
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=98.71 E-value=3.4e-08 Score=105.03 Aligned_cols=90 Identities=22% Similarity=0.272 Sum_probs=75.8
Q ss_pred CCceeecCCCCCCCCC------------CCCCHHHHhhCccccCCCCCCCChHHHHHHHHHHHHHHHhCCCcceeHHHHH
Q 019767 36 EPDVVNVPSYSRWFSF------------DSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVR 103 (336)
Q Consensus 36 q~~~ivIPs~s~WF~~------------~~ih~iE~~~lpEff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~yLT~t~~r 103 (336)
+++...+..|..+|-. |.|+..|+..||||..+ +.+|+.|||.|+.+|+.||...||...|+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~a~~~~p~~~~~~e~~~fp~~~~~------~~~yl~irn~il~~w~~np~~~l~~~~~~ 286 (776)
T 4gut_A 213 SVHVPGMNRYFQPFYQPNECGKALCVRPDVMELDELYEFPEYSRD------PTMYLALRNLILALWYTNCKEALTPQKCI 286 (776)
T ss_dssp -----CCCTTCCCBCCTTCCCCSSCBCTTSCCHHHHHHCGGGSSC------CHHHHHHHHHHHHHHHHCTTSCCCHHHHG
T ss_pred cccccccccccccccCCCccccchhcCCCcCChHHHHhChHHHhc------CceeeeehHHHHHHHHHCCceeeeHHHhh
Confidence 4556667778888855 99999999999999975 57999999999999999999999999998
Q ss_pred Hhcc-------chHHHHHHHHHhhhhcccccCCCC
Q 019767 104 RTLV-------GDVGSIRRVFDFLETWGLINYFAS 131 (336)
Q Consensus 104 ~~l~-------gDv~~i~Rih~FLe~wGlINy~~~ 131 (336)
+.+. .++..+.+|++||.++|+||+++.
T Consensus 287 ~~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 321 (776)
T 4gut_A 287 PHIIVRGLVRIRCVQEVERILYFMTRKGLINTGVL 321 (776)
T ss_dssp GGCCCSSTHHHHHHHHHHHHHHHHHHHTSSSCTTC
T ss_pred hhcccccccccccHHHHHHHHHHHHHhhhhhcccc
Confidence 8763 356778999999999999999876
No 35
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.69 E-value=1.7e-08 Score=84.97 Aligned_cols=46 Identities=28% Similarity=0.431 Sum_probs=42.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHh----CCCCHHHHHHHHhcC
Q 019767 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHV----SGKSEKDCITHFIKL 257 (336)
Q Consensus 212 ~~~~WT~eE~~~LLeav~~yG-~nW~~IA~~V----gtrT~~qC~~hf~~l 257 (336)
.++.||.+|+..|+++|++|| |+|.+|+++. .+||..+|..||.++
T Consensus 30 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnl 80 (122)
T 2roh_A 30 IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTL 80 (122)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 468999999999999999999 7999999985 789999999999885
No 36
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.67 E-value=1.5e-08 Score=83.12 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=42.5
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHh----CCCCHHHHHHHHhcC
Q 019767 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHV----SGKSEKDCITHFIKL 257 (336)
Q Consensus 212 ~~~~WT~eE~~~LLeav~~yG-~nW~~IA~~V----gtrT~~qC~~hf~~l 257 (336)
.+..||.+|+..|+++|++|| |+|.+|++.. .+||..+|..||..+
T Consensus 12 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnl 62 (105)
T 2aje_A 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTL 62 (105)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 468999999999999999999 7999999976 689999999999885
No 37
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.66 E-value=2.4e-08 Score=86.54 Aligned_cols=46 Identities=22% Similarity=0.662 Sum_probs=43.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhCCCCHHHHHHHHhcC
Q 019767 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIKL 257 (336)
Q Consensus 212 ~~~~WT~eE~~~LLeav~~yG-~nW~~IA~~VgtrT~~qC~~hf~~l 257 (336)
.++.||.+|+.+|+++|++|| ++|..||+++++||..||+.||..+
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 103 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHH
Confidence 467999999999999999999 5899999999999999999999874
No 38
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=98.66 E-value=1.9e-08 Score=104.56 Aligned_cols=85 Identities=24% Similarity=0.502 Sum_probs=74.6
Q ss_pred CCCCCCCCCCCHHHHhhCccccCCCCCCCChHHHHHHHHHHHHHHHhCCCcceeHHHHHHhc----cchHHHHHHHHHhh
Q 019767 45 YSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTL----VGDVGSIRRVFDFL 120 (336)
Q Consensus 45 ~s~WF~~~~ih~iE~~~lpEff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l----~gDv~~i~Rih~FL 120 (336)
+++.|+.+.+|+.|+..|||+..+ +..+...|+.|||.|+.+|+.||..+||..+|...+ ..|-..|.+|++|+
T Consensus 8 ~~~~l~~~~l~~~E~~~~~~~~~~--~~~~~~~yl~irn~~~~~w~~~~~~~~~~~~~~~~~~r~~~~~~~~i~~~~~~~ 85 (662)
T 2z3y_A 8 FQSRLPHDRMTSQEAACFPDIISG--PQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYL 85 (662)
T ss_dssp HHTTCCTTSCCHHHHHHCHHHHTS--CHHHHHHHHHHHHHHHHHHHTCTTBCCCHHHHHHHSCTTGGGCHHHHHHHHHHH
T ss_pred HHcCCCCCCCCHHHHHHhHHHHcC--chHHHHHHHHHHHHHHHHHHHCCCcccCHHHHHHhcCCCccCChHHHHHHHHHH
Confidence 568899999999999999999975 222446899999999999999999999999996544 46888999999999
Q ss_pred hhcccccCCCC
Q 019767 121 ETWGLINYFAS 131 (336)
Q Consensus 121 e~wGlINy~~~ 131 (336)
.++|+||++..
T Consensus 86 ~~~~~~~~~~~ 96 (662)
T 2z3y_A 86 ERHGLINFGIY 96 (662)
T ss_dssp HHTTSSSCSSC
T ss_pred HHHHHHhcCCc
Confidence 99999998876
No 39
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.66 E-value=2.4e-08 Score=86.56 Aligned_cols=46 Identities=22% Similarity=0.571 Sum_probs=43.5
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 019767 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKL 257 (336)
Q Consensus 212 ~~~~WT~eE~~~LLeav~~yG~nW~~IA~~VgtrT~~qC~~hf~~l 257 (336)
.++.||.+|+.+|++++.+||.+|..||++|++||..+|..||..+
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred cccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999875
No 40
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.62 E-value=3.1e-08 Score=76.09 Aligned_cols=50 Identities=28% Similarity=0.522 Sum_probs=44.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhC----CCHHHHHHHhCCCCHHHHHHHHhcCCCCCcc
Q 019767 212 ARSDWTEKETLQLLEAIMHFG----DDWRKVAQHVSGKSEKDCITHFIKLPFGQEF 263 (336)
Q Consensus 212 ~~~~WT~eE~~~LLeav~~yG----~nW~~IA~~VgtrT~~qC~~hf~~lPIeD~f 263 (336)
....||.+|+.+|..|+.+|+ +.|++||+++ +||.+||+.||..| .+|..
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L-~~d~~ 60 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQL-KDSVT 60 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHH-HHSCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHH-HHhcC
Confidence 356899999999999999998 4699999999 59999999999998 66643
No 41
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=7.1e-08 Score=71.99 Aligned_cols=44 Identities=18% Similarity=0.507 Sum_probs=41.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHH-hCCCCHHHHHHHHh
Q 019767 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQH-VSGKSEKDCITHFI 255 (336)
Q Consensus 212 ~~~~WT~eE~~~LLeav~~yG~nW~~IA~~-VgtrT~~qC~~hf~ 255 (336)
....||++|..++++|+.+||.||..|+++ |++||..||+.+|.
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh
Confidence 357899999999999999999999999996 99999999999985
No 42
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.61 E-value=2.5e-08 Score=83.82 Aligned_cols=46 Identities=26% Similarity=0.450 Sum_probs=42.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHh----CCCCHHHHHHHHhcC
Q 019767 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHV----SGKSEKDCITHFIKL 257 (336)
Q Consensus 212 ~~~~WT~eE~~~LLeav~~yG-~nW~~IA~~V----gtrT~~qC~~hf~~l 257 (336)
.+..||.+|+..|+++|++|| |+|.+|+++. .+||..+|..||..+
T Consensus 16 ~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnl 66 (121)
T 2juh_A 16 IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTL 66 (121)
T ss_dssp SSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 468999999999999999999 7999999996 689999999999874
No 43
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.56 E-value=6.4e-08 Score=97.69 Aligned_cols=46 Identities=24% Similarity=0.536 Sum_probs=43.5
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhc
Q 019767 211 EARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIK 256 (336)
Q Consensus 211 ~~~~~WT~eE~~~LLeav~~yG~nW~~IA~~VgtrT~~qC~~hf~~ 256 (336)
.....||.+|..++++||.+||.||..||++|||||..||+.||..
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~ 423 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVN 423 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHH
Confidence 3467899999999999999999999999999999999999999976
No 44
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.44 E-value=2.7e-07 Score=70.26 Aligned_cols=51 Identities=20% Similarity=0.383 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHH-hCCCCHHHHHHHHhcCCCCCcc
Q 019767 213 RSDWTEKETLQLLEAIMHFGDDWRKVAQH-VSGKSEKDCITHFIKLPFGQEF 263 (336)
Q Consensus 213 ~~~WT~eE~~~LLeav~~yG~nW~~IA~~-VgtrT~~qC~~hf~~lPIeD~f 263 (336)
...||++|..++.+|+.+||.||..|+++ |++||..||+.+|-.---.+.|
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wKkt~~y 59 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKTTDRY 59 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHHHTCCSS
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHhhcCCchH
Confidence 46899999999999999999999999995 9999999999999753333334
No 45
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.43 E-value=1.9e-07 Score=69.67 Aligned_cols=46 Identities=22% Similarity=0.497 Sum_probs=41.7
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHH---HhCCCCHHHHHHHHhcC
Q 019767 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQ---HVSGKSEKDCITHFIKL 257 (336)
Q Consensus 212 ~~~~WT~eE~~~LLeav~~yG~nW~~IA~---~VgtrT~~qC~~hf~~l 257 (336)
.+..||.+|+..|+++|++||.+|.+|+. .+..||.-....+|.+|
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L 55 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRL 55 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHH
Confidence 46789999999999999999999999995 56789999999999774
No 46
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.40 E-value=3.2e-08 Score=76.06 Aligned_cols=43 Identities=28% Similarity=0.533 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHHHHHHHhC----CCHHHHHHHhCCCCHHHHHHHHh
Q 019767 213 RSDWTEKETLQLLEAIMHFG----DDWRKVAQHVSGKSEKDCITHFI 255 (336)
Q Consensus 213 ~~~WT~eE~~~LLeav~~yG----~nW~~IA~~VgtrT~~qC~~hf~ 255 (336)
...||.+|..+|..||.+|+ +.|++||+.||+||.+||+.||-
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 46899999999999999999 47999999999999999999984
No 47
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.34 E-value=5.8e-07 Score=72.23 Aligned_cols=44 Identities=18% Similarity=0.410 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhc
Q 019767 213 RSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIK 256 (336)
Q Consensus 213 ~~~WT~eE~~~LLeav~~yG~nW~~IA~~VgtrT~~qC~~hf~~ 256 (336)
...||++|..++.+++..||.+|..||++|++||..||+.+|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 57899999999999999999999999999999999999999853
No 48
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.20 E-value=7.8e-07 Score=82.40 Aligned_cols=46 Identities=11% Similarity=0.245 Sum_probs=42.0
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCC------HHHHHHHhCCCCHHHHHHHHhcC
Q 019767 212 ARSDWTEKETLQLLEAIMHFGDD------WRKVAQHVSGKSEKDCITHFIKL 257 (336)
Q Consensus 212 ~~~~WT~eE~~~LLeav~~yG~n------W~~IA~~VgtrT~~qC~~hf~~l 257 (336)
.+..||.+|+.+||++|++||.. |.+||+++++||..||+.||..+
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~ 58 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVY 58 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHH
Confidence 46789999999999999999953 99999999999999999999874
No 49
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=97.87 E-value=1.5e-05 Score=85.67 Aligned_cols=86 Identities=22% Similarity=0.485 Sum_probs=74.2
Q ss_pred CCCCCCCCCCCCHHHHhhCccccCCCCCCCChHHHHHHHHHHHHHHHhCCCcceeHHHHHHh----ccchHHHHHHHHHh
Q 019767 44 SYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRT----LVGDVGSIRRVFDF 119 (336)
Q Consensus 44 s~s~WF~~~~ih~iE~~~lpEff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~----l~gDv~~i~Rih~F 119 (336)
.|.++++.+.+|..|+.+|+++-.. .-....+|+.+||.|+..|+.||...++..+|... +..|-..|.++++|
T Consensus 178 a~~~r~p~~~~~~~e~~~f~~~~~~--~~~~~~~~~~~rn~i~~~w~~~P~~a~~~~~~~~~~~r~~~~~p~~i~~~~~~ 255 (852)
T 2xag_A 178 AFQSRLPHDRMTSQEAACFPDIISG--PQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSY 255 (852)
T ss_dssp HHTTTCCTTSCCHHHHHHCHHHHTS--CHHHHHHHHHHHHHHHHHHHTCTTBCCCHHHHHHHCCTTTTSCHHHHHHHHHH
T ss_pred HHHhcCCCcccChHHHHHHHHHHHh--hhhhcCeeeEeecchhHHHhcCCHHHhhHHHHHHhCCCcccCCcHHHHHHHHH
Confidence 4688999999999999999998864 11245799999999999999999999998887544 44688999999999
Q ss_pred hhhcccccCCCC
Q 019767 120 LETWGLINYFAS 131 (336)
Q Consensus 120 Le~wGlINy~~~ 131 (336)
+.+||+||++..
T Consensus 256 ~~~~~~~~~~~~ 267 (852)
T 2xag_A 256 LERHGLINFGIY 267 (852)
T ss_dssp HHHTTSSSCSSC
T ss_pred HHHHHHHhcCcc
Confidence 999999998876
No 50
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.38 E-value=0.00021 Score=57.30 Aligned_cols=43 Identities=19% Similarity=0.318 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHHHHh-----CCCCHHHHHHHHhc
Q 019767 214 SDWTEKETLQLLEAIMHFGDDWRKVAQHV-----SGKSEKDCITHFIK 256 (336)
Q Consensus 214 ~~WT~eE~~~LLeav~~yG~nW~~IA~~V-----gtrT~~qC~~hf~~ 256 (336)
.+||.+|+..|++.+++||-.|-.|++.. ++||.++.+.||-.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~ 78 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYH 78 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHH
Confidence 78999999999999999999999999998 47999999999976
No 51
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.31 E-value=0.00028 Score=56.21 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHHhC---CCHHHHHHHhCCCCHHHHHHHHhcC
Q 019767 214 SDWTEKETLQLLEAIMHFG---DDWRKVAQHVSGKSEKDCITHFIKL 257 (336)
Q Consensus 214 ~~WT~eE~~~LLeav~~yG---~nW~~IA~~VgtrT~~qC~~hf~~l 257 (336)
--||.+|+..+|.+-++-| +-|..||+.+|+||++|...||.+|
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL 80 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence 4699999999999999999 5899999999999999999999885
No 52
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.25 E-value=0.00021 Score=52.53 Aligned_cols=44 Identities=14% Similarity=0.348 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHHHhC-------C--CHHHHHH-HhCCCCHHHHHHHHhc
Q 019767 213 RSDWTEKETLQLLEAIMHFG-------D--DWRKVAQ-HVSGKSEKDCITHFIK 256 (336)
Q Consensus 213 ~~~WT~eE~~~LLeav~~yG-------~--nW~~IA~-~VgtrT~~qC~~hf~~ 256 (336)
+..||.+||..|++.|.+|. | -|+++|+ .+..+|-+.|+.||++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k 55 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHH
Confidence 46799999999999999992 3 4999999 8999999999999987
No 53
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.91 E-value=0.00046 Score=53.71 Aligned_cols=45 Identities=18% Similarity=0.425 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHHHHhC----------CCHHHHHHHhC----CCCHHHHHHHHhcC
Q 019767 213 RSDWTEKETLQLLEAIMHFG----------DDWRKVAQHVS----GKSEKDCITHFIKL 257 (336)
Q Consensus 213 ~~~WT~eE~~~LLeav~~yG----------~nW~~IA~~Vg----trT~~qC~~hf~~l 257 (336)
...||.+|+++||++..... ..|+.||+.+. .||+.||..+|-+|
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL 62 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNL 62 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 46799999999999986533 26999999875 69999999999884
No 54
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.73 E-value=0.00025 Score=53.62 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHHhC---CCHHHHHHHhCCCCHHHHHHHHhcC
Q 019767 214 SDWTEKETLQLLEAIMHFG---DDWRKVAQHVSGKSEKDCITHFIKL 257 (336)
Q Consensus 214 ~~WT~eE~~~LLeav~~yG---~nW~~IA~~VgtrT~~qC~~hf~~l 257 (336)
--||.+||..+|...++-| .-|..||+.+ +||++|...||.+|
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQL 60 (70)
Confidence 4699999999999999999 4899999999 79999999999985
No 55
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=96.54 E-value=0.0071 Score=49.59 Aligned_cols=70 Identities=20% Similarity=0.350 Sum_probs=60.2
Q ss_pred CCCCCCHHHHhhCccccCCCCCCCChHHHHHHHHHHHHHHHhCCCcceeHHHHHHhccchHHHHHHHHHhhhhccccc
Q 019767 50 SFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLIN 127 (336)
Q Consensus 50 ~~~~ih~iE~~~lpEff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rih~FLe~wGlIN 127 (336)
+.+-+|+-|++..-..=- .|..|+.+.+.||.-...+. .++.++||+.+.-|+.-..||++||.+.|+|+
T Consensus 37 g~~LLs~~E~~LCs~lrL------~P~~YL~iK~~Li~E~~k~g--~lkk~dA~~l~kID~~K~~rIydff~~~GWi~ 106 (108)
T 2cuj_A 37 GTEKLNEKEKELCQVVRL------VPGAYLEYKSALLNECHKQG--GLRLAQARALIKIDVNKTRKIYDFLIREGYIT 106 (108)
T ss_dssp TTTTSCHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHSS--CCCHHHHHHHHTSCHHHHHHHHHHHHTTTSSC
T ss_pred CchhcCHHHHHHHHHhCC------CHHHHHHHHHHHHHHHHHcC--CCcHHHHHHHhcccHHHHHHHHHHHHHcCCCC
Confidence 567899999988755433 59999999999999886643 49999999988899999999999999999985
No 56
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=96.46 E-value=0.006 Score=48.36 Aligned_cols=70 Identities=20% Similarity=0.350 Sum_probs=59.4
Q ss_pred CCCCCCHHHHhhCccccCCCCCCCChHHHHHHHHHHHHHHHhCCCcceeHHHHHHhccchHHHHHHHHHhhhhccccc
Q 019767 50 SFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLIN 127 (336)
Q Consensus 50 ~~~~ih~iE~~~lpEff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rih~FLe~wGlIN 127 (336)
+.+-+|+-|++..-..=- .|..|+.+...||.-...+. .++.++||+.+.-|+.-..||++||.+.|+|+
T Consensus 19 ~~~lLs~~E~~LC~~lrL------~P~~YL~~K~~li~E~~~~g--~l~k~da~~~~kiD~~K~~~iydf~~~~Gwi~ 88 (90)
T 2aqe_A 19 GTEKLNEKEKELCQVVRL------VPGAYLEYKSALLNECHKQG--GLRLAQARALIKIDVNKTRKIYDFLIREGYIT 88 (90)
T ss_dssp STTTSCHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHHS--CCCHHHHHTTSSSSSHHHHHHHHHHHHTTSSC
T ss_pred CchhcCHHHHHHHHHhCC------CHHHHHHHHHHHHHHHHHcC--CCcHHHHHHHHcccHHHHHHHHHHHHHcCCCC
Confidence 466889999987755433 59999999999999886643 39999999888889999999999999999986
No 57
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.39 E-value=0.0029 Score=60.52 Aligned_cols=41 Identities=29% Similarity=0.572 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHHHhC-CCHHHHHHHhCCCCHHHHHHHH
Q 019767 214 SDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHF 254 (336)
Q Consensus 214 ~~WT~eE~~~LLeav~~yG-~nW~~IA~~VgtrT~~qC~~hf 254 (336)
.+||..+-..++.|..+|| ++|..||..|++||.+|++.++
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~ 152 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYN 152 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 5799999999999999999 8999999999999999996554
No 58
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.01 Score=46.83 Aligned_cols=70 Identities=14% Similarity=0.261 Sum_probs=59.2
Q ss_pred CCCCCCHHHHhhCccccCCCCCCCChHHHHHHHHHHHHHHHhCCCcceeHHHHHHhccchHHHHHHHHHhhhhcccc
Q 019767 50 SFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLI 126 (336)
Q Consensus 50 ~~~~ih~iE~~~lpEff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rih~FLe~wGlI 126 (336)
+.+-+|+-|++..-..=- .|..|+.+.+.||.-...+ ...++.++||+.+.-|++-..||++||.+.|.|
T Consensus 19 ~~~lLs~~E~~LC~~lrL------~P~~YL~~K~~Li~E~~k~-g~~lkk~da~~~~kiD~~K~~~iydf~~~~Gwi 88 (88)
T 2elj_A 19 DYALLSNDEQQLCIQLKI------LPKPYLVLKEVMFRELLKT-GGNLSKSACRELLNIDPIKANRIYDFFQSQNWM 88 (88)
T ss_dssp TCSSSCHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHH-SSCCCHHHHHHHTTSCHHHHHHHHHHHHHTTCC
T ss_pred CchhcCHHHHHHHHHhCC------CHHHHHHHHHHHHHHHHHh-CCCccHHHHHHHHcccHHHHHHHHHHHHHcCCC
Confidence 456788889887754332 6999999999999988764 457999999988889999999999999999986
No 59
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.18 E-value=0.0034 Score=46.60 Aligned_cols=47 Identities=17% Similarity=0.438 Sum_probs=33.8
Q ss_pred ccCCCCCCc-cccccccccC-CCccchhhhhccCCCCC-CCCCCCceecc
Q 019767 161 RLCNGCKTL-CTIACFACDK-YDLTLCARCYVRGNHRV-GVSSSDFRRVE 207 (336)
Q Consensus 161 ~~C~~C~~~-~~~~~~~c~k-~d~~LC~~CF~~G~~~~-~~~s~df~ki~ 207 (336)
..|++|+.. +.-.+|.|.. .|++||..||..|.... +..+|.|+++.
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~~ 61 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYT 61 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEEC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEEe
Confidence 679999976 5434444433 37889999999998644 44688887764
No 60
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=96.07 E-value=0.00099 Score=67.34 Aligned_cols=46 Identities=15% Similarity=0.380 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcCC
Q 019767 213 RSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLP 258 (336)
Q Consensus 213 ~~~WT~eE~~~LLeav~~yG~nW~~IA~~VgtrT~~qC~~hf~~lP 258 (336)
...||.+|..++.+++..||.||..|+++|++||..+|+.+|..--
T Consensus 189 ~d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yYY~WK 234 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWK 234 (482)
T ss_dssp ----------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHhcccc
Confidence 4589999999999999999999999999999999999999986643
No 61
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.97 E-value=0.013 Score=46.92 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHhC-----CCCHHHHHHHHhc
Q 019767 213 RSDWTEKETLQLLEAIMHFGDDWRKVAQHVS-----GKSEKDCITHFIK 256 (336)
Q Consensus 213 ~~~WT~eE~~~LLeav~~yG~nW~~IA~~Vg-----trT~~qC~~hf~~ 256 (336)
..+||.+|+..|++.+++|+-.|--|++... .||.++-+.||-.
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~ 78 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYH 78 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHH
Confidence 3689999999999999999999999999863 6999999999976
No 62
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=95.44 E-value=0.0034 Score=50.58 Aligned_cols=54 Identities=28% Similarity=0.618 Sum_probs=36.5
Q ss_pred cccCCCCCCc-cccccccccC-CCccchhhhhccCCCCCCCCCCCceecccCcccCCCCCHHH
Q 019767 160 KRLCNGCKTL-CTIACFACDK-YDLTLCARCYVRGNHRVGVSSSDFRRVEISEEARSDWTEKE 220 (336)
Q Consensus 160 k~~C~~C~~~-~~~~~~~c~k-~d~~LC~~CF~~G~~~~~~~s~df~ki~~~~~~~~~WT~eE 220 (336)
...|++|+.. +.-.+|.|.. .|++||..||..|.+ ..|.|.++... ...|++.|
T Consensus 31 gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~~H----~~H~f~~i~~~---~~~w~~~e 86 (98)
T 2dip_A 31 GIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYCH----LSHTFTFREKR---NQKWRSLE 86 (98)
T ss_dssp CCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTSG----GGSCEEECCSS---SCCCEECC
T ss_pred CCCCcCCCCCCcccCeEECCCCCCccHHHHHHccCCC----CCCCeeEecCC---CCCCcccc
Confidence 3679999964 4433444432 368899999999963 57899887643 34576544
No 63
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.76 E-value=0.021 Score=50.81 Aligned_cols=29 Identities=24% Similarity=0.656 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CCHHHHHHH
Q 019767 213 RSDWTEKETLQLLEAIMHFG-DDWRKVAQH 241 (336)
Q Consensus 213 ~~~WT~eE~~~LLeav~~yG-~nW~~IA~~ 241 (336)
...||.+||..||-||.+|| |+|+.|-.-
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 46799999999999999999 999999764
No 64
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.72 E-value=0.052 Score=40.50 Aligned_cols=45 Identities=22% Similarity=0.406 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---HHHHHHHhC--CCCHHHHHHHHhcC
Q 019767 213 RSDWTEKETLQLLEAIMHFGDD---WRKVAQHVS--GKSEKDCITHFIKL 257 (336)
Q Consensus 213 ~~~WT~eE~~~LLeav~~yG~n---W~~IA~~Vg--trT~~qC~~hf~~l 257 (336)
+-.||.|....+++||++.|.+ |..|-+.++ +.|.+++..|..++
T Consensus 7 r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 4579999999999999999954 899999987 56999999997653
No 65
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=94.69 E-value=0.034 Score=43.27 Aligned_cols=50 Identities=14% Similarity=0.272 Sum_probs=34.2
Q ss_pred cccCCCCCCc-cccccccccC-CC---ccchhhhhccCCCC-CCCCCCCceecccC
Q 019767 160 KRLCNGCKTL-CTIACFACDK-YD---LTLCARCYVRGNHR-VGVSSSDFRRVEIS 209 (336)
Q Consensus 160 k~~C~~C~~~-~~~~~~~c~k-~d---~~LC~~CF~~G~~~-~~~~s~df~ki~~~ 209 (336)
...|++|+.. +.-.+|.|.. .| ++||..||..|.+. .+...|.|.++...
T Consensus 21 ~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~ 76 (82)
T 2fc7_A 21 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRS 76 (82)
T ss_dssp SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSC
T ss_pred cCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCC
Confidence 4679999963 4333444432 24 88999999998764 44578999887643
No 66
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=94.52 E-value=0.024 Score=53.31 Aligned_cols=30 Identities=27% Similarity=0.719 Sum_probs=27.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHH
Q 019767 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQH 241 (336)
Q Consensus 212 ~~~~WT~eE~~~LLeav~~yG-~nW~~IA~~ 241 (336)
....|+.+|+..||-||.+|| |+|+.|..-
T Consensus 167 W~c~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 167 WSSNWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp SSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 457899999999999999999 999999764
No 67
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=93.36 E-value=0.02 Score=40.89 Aligned_cols=42 Identities=26% Similarity=0.584 Sum_probs=30.0
Q ss_pred cccCCCCCCccccccccccC-CCccchhhhhccCCCCCCCCCCCceecc
Q 019767 160 KRLCNGCKTLCTIACFACDK-YDLTLCARCYVRGNHRVGVSSSDFRRVE 207 (336)
Q Consensus 160 k~~C~~C~~~~~~~~~~c~k-~d~~LC~~CF~~G~~~~~~~s~df~ki~ 207 (336)
...|++|+..++ ..|.|.. .|++||..||..|.+ .|.+.++.
T Consensus 6 ~~~Cd~C~~~ig-~R~~C~~C~dyDLC~~C~~~~~H-----~H~m~~~~ 48 (52)
T 1tot_A 6 VYTCNECKHHVE-TRWHCTVCEDYDLCINCYNTKSH-----THKMVKWG 48 (52)
T ss_dssp CEEETTTTEEES-SEEEESSSSSCEECHHHHHHHCC-----CSSEEEEC
T ss_pred EEECCCCCCCCc-ceEEcCCCCCchhHHHHHhCCCC-----CCceEEec
Confidence 467999998864 3354543 378899999999874 46666654
No 68
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=92.63 E-value=0.12 Score=45.82 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CCHHHHHHHh--CCCCHHHHHHH
Q 019767 213 RSDWTEKETLQLLEAIMHFG---DDWRKVAQHV--SGKSEKDCITH 253 (336)
Q Consensus 213 ~~~WT~eE~~~LLeav~~yG---~nW~~IA~~V--gtrT~~qC~~h 253 (336)
-.+||..|...|+.|+.+|| +.|++|++.. ..||.++....
T Consensus 7 ~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y 52 (211)
T 4b4c_A 7 IKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRL 52 (211)
T ss_dssp -CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHH
Confidence 46899999999999999999 6899999874 47999987763
No 69
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=91.72 E-value=0.14 Score=49.01 Aligned_cols=47 Identities=13% Similarity=0.213 Sum_probs=39.9
Q ss_pred cCCCCCHHHHHHHHHHHHHhC----CCHHHHHH------------HhCCCCHHHHHHHHhcCC
Q 019767 212 ARSDWTEKETLQLLEAIMHFG----DDWRKVAQ------------HVSGKSEKDCITHFIKLP 258 (336)
Q Consensus 212 ~~~~WT~eE~~~LLeav~~yG----~nW~~IA~------------~VgtrT~~qC~~hf~~lP 258 (336)
.+..||.+|+..||-++.+|| |+|+.|.. .+-+||+.|+..|-..|.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi 273 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLI 273 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHH
Confidence 346899999999999999999 78999974 445899999988877653
No 70
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=89.45 E-value=0.37 Score=47.25 Aligned_cols=42 Identities=17% Similarity=0.469 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHHHhC-CCHHHHHHHhC-CCCHHHHHHHHhc
Q 019767 214 SDWTEKETLQLLEAIMHFG-DDWRKVAQHVS-GKSEKDCITHFIK 256 (336)
Q Consensus 214 ~~WT~eE~~~LLeav~~yG-~nW~~IA~~Vg-trT~~qC~~hf~~ 256 (336)
.+||..+=..++.|.++|| ++-..||..|+ +||.+|+. +|.+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~ 167 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAK 167 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHH
Confidence 6899999999999999999 89999999998 99999998 4444
No 71
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=82.43 E-value=1.4 Score=43.20 Aligned_cols=46 Identities=15% Similarity=0.291 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHHhC----CCHHHHHHHh------------CCCCHHHHHHHHhcCC
Q 019767 213 RSDWTEKETLQLLEAIMHFG----DDWRKVAQHV------------SGKSEKDCITHFIKLP 258 (336)
Q Consensus 213 ~~~WT~eE~~~LLeav~~yG----~nW~~IA~~V------------gtrT~~qC~~hf~~lP 258 (336)
+..||.+|+..||-+|.+|| |+|++|-..| -+||+.++..|-..|.
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi 289 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLL 289 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHH
Confidence 56899999999999999999 7899996664 4799999988876653
No 72
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=78.07 E-value=3.1 Score=38.50 Aligned_cols=24 Identities=17% Similarity=0.276 Sum_probs=22.2
Q ss_pred CHHHHHHHhCCCCHHHHHHHHhcC
Q 019767 234 DWRKVAQHVSGKSEKDCITHFIKL 257 (336)
Q Consensus 234 nW~~IA~~VgtrT~~qC~~hf~~l 257 (336)
-|++||++..+||....+.||..+
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKf 196 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKF 196 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCChhhHHHHHHHH
Confidence 599999999999999999999863
No 73
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=67.89 E-value=4.6 Score=29.72 Aligned_cols=47 Identities=17% Similarity=0.325 Sum_probs=36.9
Q ss_pred HHHHHHHHHhCCCcceeHHHHHHhc-----cchHHHHHHHHHhhhhcccccC
Q 019767 82 RDSIVKHYRENPSRKITFTDVRRTL-----VGDVGSIRRVFDFLETWGLINY 128 (336)
Q Consensus 82 RN~ii~~yr~np~~yLT~t~~r~~l-----~gDv~~i~Rih~FLe~wGlINy 128 (336)
|-.|++....++...+|+.+.-..+ .-+...+.|....|+..|+|.-
T Consensus 19 r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~ 70 (83)
T 2fu4_A 19 RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (83)
T ss_dssp HHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEE
Confidence 5667776555432689999988777 3478999999999999999963
No 74
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=66.46 E-value=7.3 Score=36.42 Aligned_cols=42 Identities=21% Similarity=0.251 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CCHHHHHHH--hCCCCHHHHHHHH
Q 019767 213 RSDWTEKETLQLLEAIMHFG---DDWRKVAQH--VSGKSEKDCITHF 254 (336)
Q Consensus 213 ~~~WT~eE~~~LLeav~~yG---~nW~~IA~~--VgtrT~~qC~~hf 254 (336)
++.||+.|...|+.++.+|| +.|+.|+.. +..|+.+....-|
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~ 49 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETY 49 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHH
Confidence 57899999999999999999 689999875 4467776554443
No 75
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=65.54 E-value=8.1 Score=27.88 Aligned_cols=52 Identities=6% Similarity=0.045 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHHhCCCcceeHHHHHHhccchHHHHHHHHHhhhhccccc
Q 019767 75 PRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLIN 127 (336)
Q Consensus 75 p~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rih~FLe~wGlIN 127 (336)
|..-.+.|..|++....+ ..++|.++--+.+.-.-..+.|+.+=|+..|+|-
T Consensus 5 ~~~m~~~~~~IL~~L~~~-~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~ 56 (67)
T 2heo_A 5 LSTGDNLEQKILQVLSDD-GGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVS 56 (67)
T ss_dssp ----CHHHHHHHHHHHHH-CSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEE
T ss_pred cccccHHHHHHHHHHHHc-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEe
Confidence 333334688999988774 3679999998888888999999999999999984
No 76
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=63.29 E-value=9.3 Score=31.16 Aligned_cols=47 Identities=23% Similarity=0.363 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCCcceeHHHHHHhcc-----chHHHHHHHHHhhhhcccccC
Q 019767 82 RDSIVKHYRENPSRKITFTDVRRTLV-----GDVGSIRRVFDFLETWGLINY 128 (336)
Q Consensus 82 RN~ii~~yr~np~~yLT~t~~r~~l~-----gDv~~i~Rih~FLe~wGlINy 128 (336)
|-.|++....+....+|+.+.-..|. -+...+.|...+|+..|||.-
T Consensus 20 R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 20 RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 77788877765437999999877773 378999999999999999973
No 77
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=63.25 E-value=6.9 Score=27.80 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHhCC
Q 019767 219 KETLQLLEAIMHFGDDWRKVAQHVSG 244 (336)
Q Consensus 219 eE~~~LLeav~~yG~nW~~IA~~Vgt 244 (336)
-|...+.++++.++||+.++|+.+|-
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~LGi 44 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEIGI 44 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHCc
Confidence 47788999999999999999999984
No 78
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=61.04 E-value=13 Score=30.04 Aligned_cols=51 Identities=12% Similarity=0.105 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHhCCCcceeHHHHHHhcc-----chHHHHHHHHHhhhhcccccC
Q 019767 77 VYRYYRDSIVKHYRENPSRKITFTDVRRTLV-----GDVGSIRRVFDFLETWGLINY 128 (336)
Q Consensus 77 ~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~-----gDv~~i~Rih~FLe~wGlINy 128 (336)
+.-.-|-.|++....+ ...+|+.+.-..|. -+...+.|...+|+..|||.=
T Consensus 8 r~T~qR~~Il~~l~~~-~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 63 (131)
T 2o03_A 8 RSTRQRAAISTLLETL-DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDT 63 (131)
T ss_dssp HHHHHHHHHHHHHHHC-CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEE
T ss_pred CCCHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEE
Confidence 4456688899987764 67999999877773 378999999999999999973
No 79
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=60.80 E-value=5.2 Score=29.88 Aligned_cols=46 Identities=24% Similarity=0.548 Sum_probs=33.9
Q ss_pred ccccCCCCCCccccccccccCCCccchhhhhccCCCCCCCCCCCceec
Q 019767 159 SKRLCNGCKTLCTIACFACDKYDLTLCARCYVRGNHRVGVSSSDFRRV 206 (336)
Q Consensus 159 ~k~~C~~C~~~~~~~~~~c~k~d~~LC~~CF~~G~~~~~~~s~df~ki 206 (336)
....|..|..+-+++|..|+. -.-|..||.++......+.|...+.
T Consensus 7 e~pWC~ICneDAtlrC~gCdg--DLYC~rC~rE~H~~~d~r~Hk~v~y 52 (67)
T 2d8v_A 7 GLPWCCICNEDATLRCAGCDG--DLYCARCFREGHDNFDLKEHQTSPY 52 (67)
T ss_dssp CCSSCTTTCSCCCEEETTTTS--EEECSSHHHHHTTTSSTTTCCEECC
T ss_pred CCCeeEEeCCCCeEEecCCCC--ceehHHHHHHHccchhhhccceeec
Confidence 346799999998899999973 3579999999885555555554443
No 80
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=54.38 E-value=17 Score=30.14 Aligned_cols=48 Identities=17% Similarity=0.373 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhCCCcceeHHHHHHhcc-----chHHHHHHHHHhhhhccccc
Q 019767 79 RYYRDSIVKHYRENPSRKITFTDVRRTLV-----GDVGSIRRVFDFLETWGLIN 127 (336)
Q Consensus 79 ~~~RN~ii~~yr~np~~yLT~t~~r~~l~-----gDv~~i~Rih~FLe~wGlIN 127 (336)
-.-|-.|++....+ ...+|+.+.-..|. -+...+.|...+|+..|||.
T Consensus 26 T~qR~~IL~~l~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 26 SKQREEVVSVLYRS-GTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHHHHHHHHHC-SSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 34478889888776 46999999877763 37899999999999999997
No 81
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=53.72 E-value=11 Score=31.36 Aligned_cols=47 Identities=15% Similarity=0.343 Sum_probs=37.8
Q ss_pred HHHHHHHHHhCCCcceeHHHHHHhcc-----chHHHHHHHHHhhhhcccccC
Q 019767 82 RDSIVKHYRENPSRKITFTDVRRTLV-----GDVGSIRRVFDFLETWGLINY 128 (336)
Q Consensus 82 RN~ii~~yr~np~~yLT~t~~r~~l~-----gDv~~i~Rih~FLe~wGlINy 128 (336)
|-.|++....++...+|+.+.-..|. -+...|.|...+|+..|||.-
T Consensus 19 R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 19 RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 67788866654327999999877773 378999999999999999963
No 82
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=51.25 E-value=21 Score=29.37 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCCcceeHHHHHHhcc-----chHHHHHHHHHhhhhcccccC
Q 019767 82 RDSIVKHYRENPSRKITFTDVRRTLV-----GDVGSIRRVFDFLETWGLINY 128 (336)
Q Consensus 82 RN~ii~~yr~np~~yLT~t~~r~~l~-----gDv~~i~Rih~FLe~wGlINy 128 (336)
|-.|++..... ...+|+.+.-..|. -+...+.|...+|+..|||.-
T Consensus 24 R~~Il~~L~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 24 RHAILEYLVNS-MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp HHHHHHHHHHC-SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEE
Confidence 67788877664 67899999877773 378899999999999999973
No 83
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=50.58 E-value=25 Score=25.62 Aligned_cols=46 Identities=13% Similarity=0.155 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCCcceeHHHHHHhccchHHHHHHHHHhhhhcccccCC
Q 019767 82 RDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYF 129 (336)
Q Consensus 82 RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~ 129 (336)
|..|+.....+ ..+|..+.-+.+.-....+.|...-|+..|+|-..
T Consensus 2 r~~Il~~L~~~--~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 2 KNEILEFLNRH--NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHHHS--CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 67788877665 35899998888877889999999999999999743
No 84
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=47.88 E-value=22 Score=29.05 Aligned_cols=50 Identities=12% Similarity=0.113 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHhCCCcceeHHHHHHhcc-----chHHHHHHHHHhhhhccccc
Q 019767 77 VYRYYRDSIVKHYRENPSRKITFTDVRRTLV-----GDVGSIRRVFDFLETWGLIN 127 (336)
Q Consensus 77 ~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~-----gDv~~i~Rih~FLe~wGlIN 127 (336)
+.-.-|..|++....+ ...+|+.+.-..|. -+...+.|...+|+.-|||.
T Consensus 11 r~T~qR~~Il~~L~~~-~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 11 RATRQRAAVSAALQEV-EEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHHHHHHHTTC-SSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred ccCHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 4556688999977665 46999999877764 37899999999999999996
No 85
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=45.30 E-value=21 Score=29.45 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=36.1
Q ss_pred HHHHHHHHHhCCCcceeHHHHHHhcc-----chHHHHHHHHHhhhhcccccC
Q 019767 82 RDSIVKHYRENPSRKITFTDVRRTLV-----GDVGSIRRVFDFLETWGLINY 128 (336)
Q Consensus 82 RN~ii~~yr~np~~yLT~t~~r~~l~-----gDv~~i~Rih~FLe~wGlINy 128 (336)
|..|++....++ .+|+.+.-..|. -+...+.|...+|+.-|||.=
T Consensus 21 R~~Il~~l~~~~--h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 70 (145)
T 3eyy_A 21 RQLVLEAVDTLE--HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSH 70 (145)
T ss_dssp HHHHHHHHHHHS--SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHhcC--CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEE
Confidence 677777766654 899999866653 378999999999999999963
No 86
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=42.67 E-value=28 Score=29.35 Aligned_cols=46 Identities=13% Similarity=0.246 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCcceeHHHHHHhcc-------chHHHHHHHHHhhhhcccccC
Q 019767 82 RDSIVKHYRENPSRKITFTDVRRTLV-------GDVGSIRRVFDFLETWGLINY 128 (336)
Q Consensus 82 RN~ii~~yr~np~~yLT~t~~r~~l~-------gDv~~i~Rih~FLe~wGlINy 128 (336)
|-.|++.-..+ ...+|+.+.-..|. -+...+.|...+|+.-|||.=
T Consensus 35 R~~IL~~L~~~-~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 35 REVLLKTLYHS-DTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHSC-CSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 77788877665 48999999865553 268899999999999999963
No 87
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=41.46 E-value=15 Score=29.09 Aligned_cols=33 Identities=21% Similarity=0.562 Sum_probs=25.2
Q ss_pred cccccCCCCCCccc-----cccccccCCCccchhhhhc
Q 019767 158 TSKRLCNGCKTLCT-----IACFACDKYDLTLCARCYV 190 (336)
Q Consensus 158 ~~k~~C~~C~~~~~-----~~~~~c~k~d~~LC~~CF~ 190 (336)
..-..|..|+.+++ ..+..|....|-+|..||.
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyE 51 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYE 51 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHH
T ss_pred cCCCccccccCccccCCCCCEEEeeeccCChhhHHHHH
Confidence 34467999998864 3566777777899999984
No 88
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=41.33 E-value=24 Score=26.87 Aligned_cols=29 Identities=3% Similarity=-0.106 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHhCC
Q 019767 216 WTEKETLQLLEAIMHFGDDWRKVAQHVSG 244 (336)
Q Consensus 216 WT~eE~~~LLeav~~yG~nW~~IA~~Vgt 244 (336)
...-|...|.+++++++||..+.|+.+|-
T Consensus 38 l~~~Er~~I~~aL~~~~GN~s~AA~~LGI 66 (81)
T 1umq_A 38 ADRVRWEHIQRIYEMCDRNVSETARRLNM 66 (81)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 34457788899999999999999999984
No 89
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=40.69 E-value=52 Score=26.07 Aligned_cols=47 Identities=19% Similarity=0.293 Sum_probs=37.2
Q ss_pred HHHHHHHHhCCCcceeHHHHHHhccchHHHHHHHHHhhhhcccccCC
Q 019767 83 DSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYF 129 (336)
Q Consensus 83 N~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~ 129 (336)
-.|+..-..++..++|+.+.-+.+.-+...+.|...-|+..|+|--.
T Consensus 29 ~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 29 LNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 34454444455545999999988888999999999999999999754
No 90
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=39.25 E-value=21 Score=28.71 Aligned_cols=42 Identities=21% Similarity=0.490 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCC--------CHHHHHHHhCCCCHHHHHHHHhc--CCCCCccc
Q 019767 222 LQLLEAIMHFGD--------DWRKVAQHVSGKSEKDCITHFIK--LPFGQEFI 264 (336)
Q Consensus 222 ~~LLeav~~yG~--------nW~~IA~~VgtrT~~qC~~hf~~--lPIeD~fl 264 (336)
..|-.+|...|| .|.+||+.+|-.+....+.+|.+ +|.|. |+
T Consensus 52 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~-~~ 103 (116)
T 2li6_A 52 FYLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER-HM 103 (116)
T ss_dssp THHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHHHH-HH
T ss_pred HHHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHHHH-HH
Confidence 578888888884 79999999997667788888888 56666 55
No 91
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=38.34 E-value=46 Score=25.89 Aligned_cols=41 Identities=2% Similarity=0.089 Sum_probs=32.6
Q ss_pred HHHHHhCCCcceeHHHHHHhccch----HHHHHHHHHhhhhcccccCC
Q 019767 86 VKHYRENPSRKITFTDVRRTLVGD----VGSIRRVFDFLETWGLINYF 129 (336)
Q Consensus 86 i~~yr~np~~yLT~t~~r~~l~gD----v~~i~Rih~FLe~wGlINy~ 129 (336)
.-.|... .+|+.+..+.|..| -..+.|+.+.|+..|||--.
T Consensus 42 ~~L~~~~---~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 42 RVIWSLG---EARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp HHHHHHS---CEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHhCC---CCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEE
Confidence 3446643 58999999888754 68999999999999999643
No 92
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=37.14 E-value=42 Score=26.99 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcce-eHHHHHHhccchHHHHHHHHHhhhhcccccCCCC
Q 019767 76 RVYRYYRDSIVKHYRENPSRKI-TFTDVRRTLVGDVGSIRRVFDFLETWGLINYFAS 131 (336)
Q Consensus 76 ~~Y~~~RN~ii~~yr~np~~yL-T~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~~ 131 (336)
++|-.+|+.|++ =+..|...| |..+--..+.---..+.+.+.-|+.-|||-....
T Consensus 18 QI~~~i~~~I~~-G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~~g 73 (134)
T 4ham_A 18 QIVQKIKEQVVK-GVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVKG 73 (134)
T ss_dssp HHHHHHHHHHHH-TSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHHc-CCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEcC
Confidence 455566666655 334689999 8877777777788899999999999999975543
No 93
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=36.96 E-value=38 Score=25.95 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=26.9
Q ss_pred HHHHHHHHHhCC--------CHHHHHHHhCCC---C-HHHHHHHHhcC
Q 019767 222 LQLLEAIMHFGD--------DWRKVAQHVSGK---S-EKDCITHFIKL 257 (336)
Q Consensus 222 ~~LLeav~~yG~--------nW~~IA~~Vgtr---T-~~qC~~hf~~l 257 (336)
..|-.+|.+.|| .|.+||+.+|-. + ..+.+.+|.++
T Consensus 39 ~~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~ 86 (96)
T 2jxj_A 39 YALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERI 86 (96)
T ss_dssp HHHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHH
Confidence 677788888874 899999999842 2 45777778763
No 94
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=36.89 E-value=44 Score=26.10 Aligned_cols=55 Identities=7% Similarity=0.045 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHHHhCCCcce-eHHHHHHhccchHHHHHHHHHhhhhcccccCCC
Q 019767 75 PRVYRYYRDSIVKHYRENPSRKI-TFTDVRRTLVGDVGSIRRVFDFLETWGLINYFA 130 (336)
Q Consensus 75 p~~Y~~~RN~ii~~yr~np~~yL-T~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~ 130 (336)
-++|-.+|+.|++- +..|...| |..+.-+.+.---..+.+...-|+..|+|-...
T Consensus 12 ~~i~~~i~~~I~~g-~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~~ 67 (113)
T 3tqn_A 12 QQLRDKIVEAIIDG-SYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKRR 67 (113)
T ss_dssp HHHHHHHHHHHHHT-SSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHHcC-CCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEec
Confidence 35666666666552 34578889 888887777777889999999999999997544
No 95
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=36.19 E-value=25 Score=26.72 Aligned_cols=27 Identities=22% Similarity=0.137 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhCC
Q 019767 218 EKETLQLLEAIMHFGDDWRKVAQHVSG 244 (336)
Q Consensus 218 ~eE~~~LLeav~~yG~nW~~IA~~Vgt 244 (336)
.-|...|.++++.+|||..+.|+.+|-
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~LGI 76 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLLGW 76 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHCc
Confidence 347788999999999999999999983
No 96
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=35.94 E-value=50 Score=26.48 Aligned_cols=37 Identities=19% Similarity=0.357 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCC--------CHHHHHHHhCCCC----HHHHHHHHhcC
Q 019767 221 TLQLLEAIMHFGD--------DWRKVAQHVSGKS----EKDCITHFIKL 257 (336)
Q Consensus 221 ~~~LLeav~~yG~--------nW~~IA~~VgtrT----~~qC~~hf~~l 257 (336)
-.+|-.+|.+.|| .|.+||+.+|-.+ ..+-+.+|.++
T Consensus 42 L~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~ 90 (117)
T 2jrz_A 42 LYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERI 90 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 4788899999994 7999999998532 56777788874
No 97
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=34.83 E-value=65 Score=24.63 Aligned_cols=52 Identities=10% Similarity=0.025 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhCCCcceeHHHHHHhccchHHHHHHHHHhhhhcccccCCCCCcc
Q 019767 80 YYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFASVKT 134 (336)
Q Consensus 80 ~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~~~kP 134 (336)
..|..||..-+.++ +|+.+--+.|.-...++.|...=||+-|+|-.....+|
T Consensus 17 ~~~~~IL~lL~~~g---~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~~~PP 68 (82)
T 1oyi_A 17 EIVCEAIKTIGIEG---ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDDIPP 68 (82)
T ss_dssp HHHHHHHHHHSSST---EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSSSSC
T ss_pred HHHHHHHHHHHHcC---CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCC
Confidence 45778887666655 99999999998888999999999999999999865444
No 98
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=34.06 E-value=72 Score=23.37 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=32.3
Q ss_pred cceeHHHHHHhccchHHHHHHHHHhhhhcccccCCCC
Q 019767 95 RKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFAS 131 (336)
Q Consensus 95 ~yLT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~~ 131 (336)
..+|.++.-+.+.-+...+.|+..-|+..|+|-....
T Consensus 35 ~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~ 71 (109)
T 2d1h_A 35 KPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeecc
Confidence 4599999988887799999999999999999986544
No 99
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=33.16 E-value=69 Score=23.59 Aligned_cols=58 Identities=22% Similarity=0.178 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhCC-CcceeHHHHHHhccchHHHHHHHHHhhhhcccccCCCCCccccc
Q 019767 79 RYYRDSIVKHYRENP-SRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFASVKTLKW 137 (336)
Q Consensus 79 ~~~RN~ii~~yr~np-~~yLT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~~~kP~~~ 137 (336)
-+....|+..-+.|+ ..++|+.+--+.|.-+...|.|...=|++-|+|-..- .+|..|
T Consensus 13 ~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g-~~~~~W 71 (77)
T 1qgp_A 13 QDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEA-GTPPLW 71 (77)
T ss_dssp HHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEEC-SSSCEE
T ss_pred HHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC-CCCCce
Confidence 344677888888887 7799999998888888889999999999999996543 345444
No 100
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=33.00 E-value=52 Score=25.88 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=31.8
Q ss_pred HhCCCcceeHHHHHH-hccchHHHHHHHHHhhhhccccc
Q 019767 90 RENPSRKITFTDVRR-TLVGDVGSIRRVFDFLETWGLIN 127 (336)
Q Consensus 90 r~np~~yLT~t~~r~-~l~gDv~~i~Rih~FLe~wGlIN 127 (336)
..+| +.|.++... .+.-|...+.|-...|++-|||=
T Consensus 26 ~~~~--~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe 62 (95)
T 1bja_A 26 AKKD--FITAAEVREVHPDLGNAVVNSNIGVLIKKGLVE 62 (95)
T ss_dssp HHST--TBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEE
T ss_pred HHCC--CCCHHHHHHHHhcccHHHHHHHHHHHHHCCCee
Confidence 3445 999999999 77789999999999999999996
No 101
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=32.36 E-value=48 Score=26.79 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHhCCCcce-eHHHHHHhccchHHHHHHHHHhhhhcccccCCC
Q 019767 75 PRVYRYYRDSIVKHYRENPSRKI-TFTDVRRTLVGDVGSIRRVFDFLETWGLINYFA 130 (336)
Q Consensus 75 p~~Y~~~RN~ii~~yr~np~~yL-T~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~ 130 (336)
-.+|-.+|+.|++- +..|...| |..+--+.+.---..+.+...-|+..|||-...
T Consensus 7 ~~i~~~i~~~I~~g-~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~~ 62 (129)
T 2ek5_A 7 KQIASLIEDSIVDG-TLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKKR 62 (129)
T ss_dssp HHHHHHHHHHHHTT-SSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEET
T ss_pred HHHHHHHHHHHHhC-CCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEec
Confidence 46788888888763 45688999 888887788778888999999999999996543
No 102
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=32.22 E-value=76 Score=25.07 Aligned_cols=51 Identities=12% Similarity=0.117 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHHHHHhCCCcceeHHHHHHhccchHHHHHHHHHhhhhcccc
Q 019767 74 NPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLI 126 (336)
Q Consensus 74 tp~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rih~FLe~wGlI 126 (336)
.++.|-++++.|.+....+ ..+|+.+.|..+.---....=|..||++.|+.
T Consensus 60 ~~~~~~~~~~~l~~~~~~~--~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~T 110 (121)
T 2pjp_A 60 RNDRIVEFANMIRDLDQEC--GSTCAADFRDRLGVGRKLAIQILEYFDRIGFT 110 (121)
T ss_dssp EHHHHHHHHHHHHHHHHHH--SSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSE
T ss_pred CHHHHHHHHHHHHHHHHHC--CCccHHHHHHHHCCcHHHHHHHHHHHhhcCCe
Confidence 4899999999999988885 78999999988853333344688999998874
No 103
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=31.71 E-value=37 Score=27.27 Aligned_cols=54 Identities=6% Similarity=0.116 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHHhCCCcce-eHHHHHHhccchHHHHHHHHHhhhhcccccCC
Q 019767 75 PRVYRYYRDSIVKHYRENPSRKI-TFTDVRRTLVGDVGSIRRVFDFLETWGLINYF 129 (336)
Q Consensus 75 p~~Y~~~RN~ii~~yr~np~~yL-T~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~ 129 (336)
-.+|-.+|+.|+.- ...|...| |..+.-+.+.---..+.+...-|+..|||-..
T Consensus 14 ~~i~~~l~~~I~~g-~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~ 68 (126)
T 3by6_A 14 LQLVDRIKNEVATD-VLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTI 68 (126)
T ss_dssp HHHHHHHHHHHHTT-SSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHhC-CCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 35666777776653 24578899 99888888877888899999999999999543
No 104
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=31.60 E-value=55 Score=26.22 Aligned_cols=40 Identities=10% Similarity=-0.029 Sum_probs=34.2
Q ss_pred CCCcceeHHHHHHhccchHHHHHHHHHhhhhcccccCCCC
Q 019767 92 NPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFAS 131 (336)
Q Consensus 92 np~~yLT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~~ 131 (336)
.+..++|..+-.+.+.-+...+.|+.+.|++-|+|--..+
T Consensus 47 ~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 47 EGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp TTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred cCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 3456689999888888899999999999999999987665
No 105
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=30.44 E-value=83 Score=24.19 Aligned_cols=42 Identities=10% Similarity=0.113 Sum_probs=34.0
Q ss_pred HHHHHHHhCCCcceeHHHHHHhccchHHHHHHHHHhhhhccccc
Q 019767 84 SIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLIN 127 (336)
Q Consensus 84 ~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rih~FLe~wGlIN 127 (336)
.|++.-+. ...+|+++--+.|.-....|.|..+.|++.|+|-
T Consensus 6 ~Il~~L~~--~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~ 47 (87)
T 2k02_A 6 EVRDMLAL--QGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVV 47 (87)
T ss_dssp HHHHHHHH--SCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSE
T ss_pred HHHHHHHH--cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 34444344 5789999999899889999999999999999763
No 106
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=30.40 E-value=57 Score=24.60 Aligned_cols=57 Identities=14% Similarity=0.083 Sum_probs=36.1
Q ss_pred ChHHHHHH----HHHHHHHHHhCCCcceeHHHHHHhcc-----c-------hHHHHHHHHHhhhhcccccCCC
Q 019767 74 NPRVYRYY----RDSIVKHYRENPSRKITFTDVRRTLV-----G-------DVGSIRRVFDFLETWGLINYFA 130 (336)
Q Consensus 74 tp~~Y~~~----RN~ii~~yr~np~~yLT~t~~r~~l~-----g-------Dv~~i~Rih~FLe~wGlINy~~ 130 (336)
.+..+..| +++|+..+-.-|-..||..+++.-+. | -...+..++.|.-.+|+|...+
T Consensus 23 ~~~T~~~y~~~l~~~i~~~lg~~~l~~It~~~i~~~~~~l~~~~s~~t~~~~~~~l~~~~~~Av~~~~i~~NP 95 (118)
T 2kj8_A 23 SVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNP 95 (118)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSBTTSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTTSCSCCS
T ss_pred CHHHHHHHHHHHHHHhhHHhcCCcHHHCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHcCCcccCc
Confidence 44444444 44555555556777899888876442 1 2345677788888999986543
No 107
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=30.28 E-value=35 Score=28.27 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhC-CCHHHHHHHhCCCCHHHHHHHHhcC
Q 019767 219 KETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIKL 257 (336)
Q Consensus 219 eE~~~LLeav~~yG-~nW~~IA~~VgtrT~~qC~~hf~~l 257 (336)
+-+.++|+.+++.| -.|.+||+.+|- |+..|..|..+|
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg~-s~~tv~~rl~~L 41 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVGL-STTPCWRRIQKM 41 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHTC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCc-CHHHHHHHHHHH
Confidence 45788999999888 689999999984 889999988886
No 108
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=30.11 E-value=92 Score=26.54 Aligned_cols=54 Identities=17% Similarity=0.058 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHHHHHHHhCCCcceeHHHHHHhcc--c-hHHHHHHHHHhhhhcccccCCC
Q 019767 74 NPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLV--G-DVGSIRRVFDFLETWGLINYFA 130 (336)
Q Consensus 74 tp~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~--g-Dv~~i~Rih~FLe~wGlINy~~ 130 (336)
..+.|...++..+. |.. .+.-|..+.++.|. | +-..|-.|.++|...|+||=..
T Consensus 13 ~~~~~~~a~~~Al~-~Ls--~r~~S~~EL~~KL~~kg~~~~~ie~vl~~L~~~g~ldD~r 69 (177)
T 3e3v_A 13 LADDISKGYNAALN-YLS--YQLRTRKEVEDKLRSLDIHEDYISEIINKLIDLDLINDKN 69 (177)
T ss_dssp CHHHHHHHHHHHHH-HHH--SSCCCHHHHHTTSGGGTCCHHHHHHHHHHHHHTTSSCHHH
T ss_pred HHHHHHHHHHHHHH-Hhc--cccccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 35778888888776 444 56778889998887 3 7889999999999999998443
No 109
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=29.88 E-value=52 Score=26.64 Aligned_cols=43 Identities=16% Similarity=0.447 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhCC--------CHHHHHHHhCCCC----HHHHHHHHhc--CCCCCcc
Q 019767 221 TLQLLEAIMHFGD--------DWRKVAQHVSGKS----EKDCITHFIK--LPFGQEF 263 (336)
Q Consensus 221 ~~~LLeav~~yG~--------nW~~IA~~VgtrT----~~qC~~hf~~--lPIeD~f 263 (336)
..+|-.+|.+.|| .|.+||+.+|--+ ..+.+.+|.+ +|.|..+
T Consensus 53 L~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~~~ 109 (125)
T 2cxy_A 53 LFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFECKI 109 (125)
T ss_dssp HHHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4788889999984 8999999998543 4567777877 3455443
No 110
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=29.54 E-value=83 Score=23.62 Aligned_cols=55 Identities=24% Similarity=0.206 Sum_probs=41.8
Q ss_pred HHHHHHHHHhCC-CcceeHHHHHHhccchHHHHHHHHHhhhhcccccCCCCCccccc
Q 019767 82 RDSIVKHYRENP-SRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFASVKTLKW 137 (336)
Q Consensus 82 RN~ii~~yr~np-~~yLT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~~~kP~~~ 137 (336)
...|++..+.|+ .+++|+.+--+.|.-.-..|.|...=|++-|+|-..- .+|..|
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g-~~~~~W 67 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEA-GTPPLW 67 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEES-SSSCEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC-CCCCee
Confidence 344555555655 7899999998888878889999999999999997643 455444
No 111
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=28.70 E-value=52 Score=25.37 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=18.9
Q ss_pred cCCCCCHHHHHHHHHHHHHhC
Q 019767 212 ARSDWTEKETLQLLEAIMHFG 232 (336)
Q Consensus 212 ~~~~WT~eE~~~LLeav~~yG 232 (336)
..+-|+.+=|..++||+..|-
T Consensus 5 ~e~vW~~~lE~aF~eaL~~yp 25 (82)
T 2hzd_A 5 AEGVWSPDIEQSFQEALSIYP 25 (82)
T ss_dssp GSCCSCHHHHHHHHHHHHHSC
T ss_pred cCCcCCHHHHHHHHHHHHHcC
Confidence 357899999999999999998
No 112
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=28.66 E-value=86 Score=23.39 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=33.9
Q ss_pred HHHHHHHhCCCcceeHHHHHHhccchHHHHHHHHHhhhhcccc
Q 019767 84 SIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLI 126 (336)
Q Consensus 84 ~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rih~FLe~wGlI 126 (336)
.|++.-+. ...+++++--+.|.-....|.|-.+.|++.|+|
T Consensus 6 ~Il~~L~~--~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l 46 (78)
T 1xn7_A 6 QVRDLLAL--RGRMEAAQISQTLNTPQPMINAMLQQLESMGKA 46 (78)
T ss_dssp HHHHHHHH--SCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHH--cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 34444444 568999999989988999999999999999987
No 113
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=28.38 E-value=1.2e+02 Score=22.63 Aligned_cols=55 Identities=7% Similarity=0.081 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHhCCCcceeHHHHHHhccchHHHHHHHHHhhhhcccccCC
Q 019767 75 PRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYF 129 (336)
Q Consensus 75 p~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~ 129 (336)
..++.+|-++|-.....+-....|+.+.-..+.--..++.|=...||+.|+|--.
T Consensus 3 ~~r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 3 ESIVTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp CTHHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEec
Confidence 3466677777766545532456899998777654567799999999999999643
No 114
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=28.17 E-value=1e+02 Score=24.04 Aligned_cols=53 Identities=17% Similarity=0.203 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHHHHHHhCCCcceeHHHHHHhccchHHHHHHHHHhhhhcccccCC
Q 019767 74 NPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYF 129 (336)
Q Consensus 74 tp~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~ 129 (336)
|+..+..++ .|+...+ ....+|+++.-+.+.-+..++.|+..=|+..|||...
T Consensus 12 t~~~~~~L~-~l~~l~~--~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~ 64 (139)
T 2x4h_A 12 SRREFSYLL-TIKRYND--SGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKK 64 (139)
T ss_dssp CHHHHHHHH-HHHHHHT--TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHH-HHHHHHh--cCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEec
Confidence 455555555 3444333 3567999999888888999999999999999999864
No 115
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=28.15 E-value=1.1e+02 Score=23.03 Aligned_cols=47 Identities=15% Similarity=0.177 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhCCCcceeHHHHHHhccchHHHHHHHHHhhhhcccccCCC
Q 019767 81 YRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFA 130 (336)
Q Consensus 81 ~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~ 130 (336)
.|-.|+..... ..+|+++..+.+.-+-..+.|...-|+..|||....
T Consensus 22 ~r~~IL~~L~~---~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~ 68 (114)
T 2oqg_A 22 TRWEILTELGR---ADQSASSLATRLPVSRQAIAKHLNALQACGLVESVK 68 (114)
T ss_dssp HHHHHHHHHHH---SCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEe
Confidence 45667776533 238999988888779999999999999999997543
No 116
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=27.70 E-value=28 Score=26.80 Aligned_cols=32 Identities=31% Similarity=0.685 Sum_probs=26.1
Q ss_pred cccCCCCCCccccccccccCCCccchhhhhcc
Q 019767 160 KRLCNGCKTLCTIACFACDKYDLTLCARCYVR 191 (336)
Q Consensus 160 k~~C~~C~~~~~~~~~~c~k~d~~LC~~CF~~ 191 (336)
.+.|+.|+.....-.|.|...++.+-..|...
T Consensus 47 ~~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca~~ 78 (89)
T 1v5n_A 47 VYTCDKCEEEGTIWSYHCDECDFDLHAKCALN 78 (89)
T ss_dssp SCCCTTTSCCCCSCEEECTTTCCCCCHHHHHC
T ss_pred CeEeCCCCCcCCCcEEEcCCCCCeEcHHhcCC
Confidence 46899999987666788988889998888753
No 117
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=27.65 E-value=66 Score=25.07 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhCC--------CHHHHHHHhCCCC----HHHHHHHHhc
Q 019767 221 TLQLLEAIMHFGD--------DWRKVAQHVSGKS----EKDCITHFIK 256 (336)
Q Consensus 221 ~~~LLeav~~yG~--------nW~~IA~~VgtrT----~~qC~~hf~~ 256 (336)
-..|-.+|.+.|| .|.+||+.+|--+ ..+-+.+|.+
T Consensus 46 L~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k 93 (107)
T 2lm1_A 46 LYTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYER 93 (107)
T ss_dssp HHHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHH
Confidence 4678888888884 7999999998532 3566667766
No 118
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=27.60 E-value=88 Score=24.12 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=36.3
Q ss_pred HHhCCCcceeHHHHHHhccchHHHHHHHHHhhhhcccccCCCC
Q 019767 89 YRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFAS 131 (336)
Q Consensus 89 yr~np~~yLT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~~ 131 (336)
-..+|...+|+++..+.+.-+-.++.|+..=|+..|+|--..+
T Consensus 40 l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~ 82 (139)
T 3eco_A 40 LYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVD 82 (139)
T ss_dssp HHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCC
Confidence 3445667899999988888899999999999999999986554
No 119
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=27.51 E-value=53 Score=25.62 Aligned_cols=27 Identities=15% Similarity=-0.101 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhCC
Q 019767 218 EKETLQLLEAIMHFGDDWRKVAQHVSG 244 (336)
Q Consensus 218 ~eE~~~LLeav~~yG~nW~~IA~~Vgt 244 (336)
.-|...|.++++.+|||..+.|+.+|-
T Consensus 57 ~~Er~~I~~aL~~~~gn~~~AA~~LGI 83 (98)
T 1eto_A 57 EVEQPLLDMVMQYTLGNQTRAALMMGI 83 (98)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 347788889999999999999999983
No 120
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=27.04 E-value=17 Score=27.75 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHhCC
Q 019767 217 TEKETLQLLEAIMHFGDDWRKVAQHVSG 244 (336)
Q Consensus 217 T~eE~~~LLeav~~yG~nW~~IA~~Vgt 244 (336)
+.+|...||+ |.||...|+++|-
T Consensus 11 ~r~~l~~lL~-----g~dW~~LA~~Lg~ 33 (85)
T 1ngr_A 11 KREEVEKLLN-----GDTWRHLAGELGY 33 (85)
T ss_dssp TTHHHHHHSC-----TTHHHHHHHHTTC
T ss_pred HHHHHHHHhC-----cCCHHHHHHHcCC
Confidence 3467788888 9999999999996
No 121
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=26.98 E-value=88 Score=24.05 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=34.4
Q ss_pred hCCCcceeHHHHHHhccchHHHHHHHHHhhhhcccccCCCC
Q 019767 91 ENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFAS 131 (336)
Q Consensus 91 ~np~~yLT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~~ 131 (336)
.++...+|.++..+.+.-+...+.|+..=|+..|||--..+
T Consensus 45 ~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~ 85 (141)
T 3bro_A 45 RNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVS 85 (141)
T ss_dssp HTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCC
Confidence 34555799999988888899999999999999999976544
No 122
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=26.58 E-value=67 Score=25.53 Aligned_cols=55 Identities=13% Similarity=0.218 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHhCCCcce-eHHHHHHhccchHHHHHHHHHhhhhcccccCCC
Q 019767 75 PRVYRYYRDSIVKHYRENPSRKI-TFTDVRRTLVGDVGSIRRVFDFLETWGLINYFA 130 (336)
Q Consensus 75 p~~Y~~~RN~ii~~yr~np~~yL-T~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~ 130 (336)
-++|-.+|+.|++ -..-|...| |..+-.+.+.--...+.+...-|+.-|+|--..
T Consensus 16 ~~i~~~i~~~I~~-g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 71 (125)
T 3neu_A 16 SQISDWMKKQMIT-GEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKR 71 (125)
T ss_dssp HHHHHHHHHHHHT-TSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHHh-CCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEec
Confidence 3556666666654 233578888 588877777777899999999999999996543
No 123
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=25.98 E-value=91 Score=25.12 Aligned_cols=41 Identities=20% Similarity=0.417 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCC--------CHHHHHHHhCCCC----HHHHHHHHhcC--CCCC
Q 019767 221 TLQLLEAIMHFGD--------DWRKVAQHVSGKS----EKDCITHFIKL--PFGQ 261 (336)
Q Consensus 221 ~~~LLeav~~yG~--------nW~~IA~~VgtrT----~~qC~~hf~~l--PIeD 261 (336)
-.+|-.+|.+.|| .|.+||+.+|-.+ ...-+.+|.++ |.|.
T Consensus 44 Ly~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~ 98 (122)
T 2eqy_A 44 LFQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPYNL 98 (122)
T ss_dssp HHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 4778888999995 7999999998432 35667778873 5554
No 124
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=25.64 E-value=30 Score=30.68 Aligned_cols=59 Identities=10% Similarity=0.082 Sum_probs=48.7
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCcceeHHHHHHhccchHHHHHHHHHhhhhcccccCCCC
Q 019767 72 SKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFAS 131 (336)
Q Consensus 72 ~ktp~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~~ 131 (336)
+..+.+|-.+|+.|+.- +..|...|+..+--..+.---..|.+-..-|+.-|||-....
T Consensus 26 s~~~~v~~~L~~~I~~g-~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~~~ 84 (237)
T 3c7j_A 26 LARTVIEEKLRNAIIDG-SLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRVETH 84 (237)
T ss_dssp GHHHHHHHHHHHHHHTS-SSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT
T ss_pred ccHHHHHHHHHHHHHhC-CCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 44577999999999984 456899999988877787778889999999999999976543
No 125
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=25.58 E-value=1.1e+02 Score=22.22 Aligned_cols=49 Identities=14% Similarity=0.034 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCCCcceeHHHHHHhccchHHHHHHHHHhhhhcccccCCCC
Q 019767 81 YRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFAS 131 (336)
Q Consensus 81 ~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~~ 131 (336)
.|-.|+..-.. ...+|+++..+.+.-+-..+.|...-|+..|+|....+
T Consensus 25 ~~~~il~~l~~--~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~ 73 (99)
T 3cuo_A 25 KRLLILCMLSG--SPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRD 73 (99)
T ss_dssp HHHHHHHHHTT--CCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHh--CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec
Confidence 35556654433 45799999988887789999999999999999986544
No 126
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=25.06 E-value=28 Score=26.52 Aligned_cols=56 Identities=18% Similarity=0.264 Sum_probs=43.0
Q ss_pred CChHHHHHHHHHHHHHHHhCCCcce-eHHHHHHhccchHHHHHHHHHhhhhcccccCC
Q 019767 73 KNPRVYRYYRDSIVKHYRENPSRKI-TFTDVRRTLVGDVGSIRRVFDFLETWGLINYF 129 (336)
Q Consensus 73 ktp~~Y~~~RN~ii~~yr~np~~yL-T~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~ 129 (336)
..-.+|-.+|..|+.. ...|...| |..+--+.+.--...+.+...-|+..|||--.
T Consensus 12 ~~~~l~~~i~~~I~~~-~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~ 68 (102)
T 1v4r_A 12 GYADVATHFRTLIKSG-ELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSR 68 (102)
T ss_dssp CHHHHHHHHHHHTTTT-SCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEE
T ss_pred HHHHHHHHHHHHHHhC-CCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 3456777777777762 23467888 89988888877788899999999999999643
No 127
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=24.85 E-value=87 Score=23.94 Aligned_cols=35 Identities=26% Similarity=0.229 Sum_probs=31.9
Q ss_pred CCcceeHHHHHHhccchHHHHHHHHHhhhhccccc
Q 019767 93 PSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLIN 127 (336)
Q Consensus 93 p~~yLT~t~~r~~l~gDv~~i~Rih~FLe~wGlIN 127 (336)
.++-+|..+-++.+.-|...+.|+..-||..|||-
T Consensus 33 g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIk 67 (91)
T 2dk5_A 33 GNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIK 67 (91)
T ss_dssp CTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 45679999999999989999999999999999996
No 128
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=24.64 E-value=97 Score=21.56 Aligned_cols=29 Identities=21% Similarity=0.001 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHhCC
Q 019767 215 DWTEKETLQLLEAIMHFGDDWRKVAQHVSG 244 (336)
Q Consensus 215 ~WT~eE~~~LLeav~~yG~nW~~IA~~Vgt 244 (336)
....-|...+.++++.+ ||..+.|+.+|-
T Consensus 17 ~l~~~Er~~I~~aL~~~-gn~~~aA~~LGI 45 (61)
T 1g2h_A 17 IIGFYEAQVLKLFYAEY-PSTRKLAQRLGV 45 (61)
T ss_dssp SCSHHHHHHHHHHHHHS-CSHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHh-CCHHHHHHHhCC
Confidence 45567888999999999 999999999983
No 129
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=24.48 E-value=1.1e+02 Score=22.78 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=34.0
Q ss_pred HHHHHHHhCCCcceeHHHHHHhccc-hHHHHHHHHHhhhhccccc
Q 019767 84 SIVKHYRENPSRKITFTDVRRTLVG-DVGSIRRVFDFLETWGLIN 127 (336)
Q Consensus 84 ~ii~~yr~np~~yLT~t~~r~~l~g-Dv~~i~Rih~FLe~wGlIN 127 (336)
..|+.|+..|...+++.++-..|.. ..-=|.-|..-||--|||-
T Consensus 18 kFi~l~~~~~~~~i~l~~aa~~L~v~~kRRiYDI~NVLe~igli~ 62 (76)
T 1cf7_A 18 KFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIE 62 (76)
T ss_dssp HHHHHHHHSSTTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHhCCCCcCcHHHHHHHhCCccceehhhHHHHHhHhccee
Confidence 3466889999999999999888887 5555555555688888884
No 130
>3dpt_A ROCO, RAB family protein; alpha-beta-protein, signaling protein; 2.90A {Chlorobaculum tepidum}
Probab=24.23 E-value=50 Score=31.33 Aligned_cols=58 Identities=19% Similarity=0.426 Sum_probs=41.0
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCcceeHHHHHHhc--cc--hHHHHHHHHHhhhhcccccCCCC
Q 019767 72 SKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTL--VG--DVGSIRRVFDFLETWGLINYFAS 131 (336)
Q Consensus 72 ~ktp~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l--~g--Dv~~i~Rih~FLe~wGlINy~~~ 131 (336)
.+-|..|+.+|+.+.+. +. ...|||.+++++.. .| |-..+..+..||...|.|-|--+
T Consensus 12 ~~iP~sW~~l~~~L~~~-~~-~~~~is~~e~~~i~~~~gl~~~~~~~~~l~~LH~lG~il~f~d 73 (332)
T 3dpt_A 12 TPLAPSWIKVKEKLVEA-TT-AQRYLNRTEVEKICNDSGITDPGERKTLLGYLNNLGIVLYFEA 73 (332)
T ss_dssp -----CHHHHHHHHHHH-HH-HSSEECHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTSSEECTT
T ss_pred CccCHHHHHHHHHHHhh-hc-CCCeecHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCEEEEecC
Confidence 34689999999999985 44 36899999987532 13 33457888999999999987655
No 131
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=24.09 E-value=50 Score=25.67 Aligned_cols=67 Identities=10% Similarity=0.084 Sum_probs=48.3
Q ss_pred CHHHHhhCccccCCCCCCCChHHHHHH--HHHHHHHHHhCCCcce-eHHHHHHhccchHHHHHHHHHhhhhcccccCCC
Q 019767 55 SECEVKFLPEFFDSRSPSKNPRVYRYY--RDSIVKHYRENPSRKI-TFTDVRRTLVGDVGSIRRVFDFLETWGLINYFA 130 (336)
Q Consensus 55 h~iE~~~lpEff~~~~~~ktp~~Y~~~--RN~ii~~yr~np~~yL-T~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~ 130 (336)
|..|+....+-.. ...|.++ |+.|+..| .|...| |..+--+.+.--...+.+...-|+.-|||-...
T Consensus 8 ~~~~~~~~~~~~~-------~~~y~~l~i~~~I~~~l--~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 8 HHMSKAVVQMAIS-------SLSYSELEAIEHIFEEL--DGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp THHHHHHHHHHHH-------TSCHHHHHHHHHHTTSS--BTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCccccccccchh-------HHHHHHHHHHHHHHhhh--cCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 4555554443332 3578888 99999433 467777 888877777767788999999999999996543
No 132
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=23.77 E-value=95 Score=23.00 Aligned_cols=34 Identities=3% Similarity=0.047 Sum_probs=30.9
Q ss_pred CCcceeHHHHHHhccchHHHHHHHHHhhhhcccc
Q 019767 93 PSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLI 126 (336)
Q Consensus 93 p~~yLT~t~~r~~l~gDv~~i~Rih~FLe~wGlI 126 (336)
+...+|.++.-+.+.-+-.++.|+..=|+..|||
T Consensus 27 ~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 27 GGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMV 60 (95)
T ss_dssp TTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSE
T ss_pred CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCc
Confidence 4556999999888888999999999999999999
No 133
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=23.29 E-value=97 Score=22.94 Aligned_cols=45 Identities=16% Similarity=0.125 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCCCcceeHHHHHHhccchHHHHHHHHHhhhhcccccCC
Q 019767 81 YRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYF 129 (336)
Q Consensus 81 ~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~ 129 (336)
.|-.|+..- . ..+|+++.-+.+.-....+.|...-|+..|||...
T Consensus 32 ~r~~Il~~L-~---~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~ 76 (96)
T 1y0u_A 32 VRRKILRML-D---KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERV 76 (96)
T ss_dssp HHHHHHHHH-H---TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHH-c---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 355666655 3 34899998888877889999999999999999743
No 134
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=23.28 E-value=95 Score=25.26 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCC--------CHHHHHHHhCC-C----CHHHHHHHHhcC
Q 019767 221 TLQLLEAIMHFGD--------DWRKVAQHVSG-K----SEKDCITHFIKL 257 (336)
Q Consensus 221 ~~~LLeav~~yG~--------nW~~IA~~Vgt-r----T~~qC~~hf~~l 257 (336)
-.+|-..|.+.|| -|.+||+.+|- + ....-+.||.++
T Consensus 44 L~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~ 93 (121)
T 2rq5_A 44 LACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQY 93 (121)
T ss_dssp HHHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHH
Confidence 4789999999995 79999999983 1 245667788873
No 135
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=23.20 E-value=49 Score=26.98 Aligned_cols=42 Identities=21% Similarity=0.490 Sum_probs=33.6
Q ss_pred HHHHHHHHHhCC--------CHHHHHHHhCCCCHHHHHHHHhc--CCCCCccc
Q 019767 222 LQLLEAIMHFGD--------DWRKVAQHVSGKSEKDCITHFIK--LPFGQEFI 264 (336)
Q Consensus 222 ~~LLeav~~yG~--------nW~~IA~~VgtrT~~qC~~hf~~--lPIeD~fl 264 (336)
.+|-.+|.+.|| .|.+||+.+|-.+..+-+.+|.+ +|.|. |+
T Consensus 51 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~-~~ 102 (123)
T 1kkx_A 51 FYLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER-HM 102 (123)
T ss_dssp THHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH-HS
T ss_pred HHHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH-HH
Confidence 567778888884 69999999997667888888888 56776 66
No 136
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=23.05 E-value=66 Score=26.12 Aligned_cols=36 Identities=14% Similarity=0.304 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCC--------CHHHHHHHhCCC-----CHHHHHHHHhc
Q 019767 221 TLQLLEAIMHFGD--------DWRKVAQHVSGK-----SEKDCITHFIK 256 (336)
Q Consensus 221 ~~~LLeav~~yG~--------nW~~IA~~Vgtr-----T~~qC~~hf~~ 256 (336)
..+|-.+|...|| .|.+||+.+|-. ...+.+.+|.+
T Consensus 54 L~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k 102 (128)
T 1c20_A 54 LYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMK 102 (128)
T ss_dssp HHHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHH
Confidence 4778888999985 799999999832 24677778877
No 137
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=22.82 E-value=88 Score=25.05 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=35.4
Q ss_pred hCCCcceeHHHHHHhccchHHHHHHHHHhhhhcccccCCCC
Q 019767 91 ENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFAS 131 (336)
Q Consensus 91 ~np~~yLT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~~ 131 (336)
..+...+|.++.-+.+.-|-..+.|+.+=|++.|||--..+
T Consensus 46 ~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~ 86 (147)
T 4b8x_A 46 FSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPN 86 (147)
T ss_dssp TSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeec
Confidence 34667799999888888899999999999999999986655
No 138
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=22.63 E-value=65 Score=26.94 Aligned_cols=56 Identities=16% Similarity=0.232 Sum_probs=30.3
Q ss_pred ccCCCCCCccccccccccCCCccchhhhhccCCCCCCCCCCCceecccCcccCCCCCHHHHHHHH
Q 019767 161 RLCNGCKTLCTIACFACDKYDLTLCARCYVRGNHRVGVSSSDFRRVEISEEARSDWTEKETLQLL 225 (336)
Q Consensus 161 ~~C~~C~~~~~~~~~~c~k~d~~LC~~CF~~G~~~~~~~s~df~ki~~~~~~~~~WT~eE~~~LL 225 (336)
..|..|+.. .....+...++.+|.+|-.- |+. +..|.+++-- .-+.||.+|...|.
T Consensus 26 ~~CaDCg~~--~P~WaS~n~GvfiC~~Csgi--HR~-LG~~s~VrSl----~ld~w~~~~l~~m~ 81 (140)
T 2olm_A 26 RKCFDCDQR--GPTYVNMTVGSFVCTSCSGS--LRG-LNPPHRVKSI----SMTTFTQQEIEFLQ 81 (140)
T ss_dssp GSCTTTCSS--CCCEEETTTTEEECHHHHHH--HTT-SSSCCCEEET----TTCCCCHHHHHHHH
T ss_pred CcCCCCCCC--CCCceeeccCEEEchhccch--hcc-CCCcceeeec----CCCCCCHHHHHHHH
Confidence 568888764 22223335678899999653 222 1112333321 12579998765554
No 139
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=22.57 E-value=43 Score=24.90 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=17.0
Q ss_pred HHHHHHHHHhhhhcccccCCCC
Q 019767 110 VGSIRRVFDFLETWGLINYFAS 131 (336)
Q Consensus 110 v~~i~Rih~FLe~wGlINy~~~ 131 (336)
...+..++.|...+|+|...+.
T Consensus 76 ~~~l~~~~~~A~~~~~i~~NP~ 97 (116)
T 2kj5_A 76 LRWLKRMFNYAIKRHIIEYNPA 97 (116)
T ss_dssp HHHHHHHHHHHHHTTSCSSCGG
T ss_pred HHHHHHHHHHHHHcCccccCch
Confidence 4667888899999999975443
No 140
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=22.51 E-value=1.1e+02 Score=23.91 Aligned_cols=40 Identities=10% Similarity=0.135 Sum_probs=33.5
Q ss_pred HhCCCcceeHHHHHHhccchHHHHHHHHHhhhhcccccCC
Q 019767 90 RENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYF 129 (336)
Q Consensus 90 r~np~~yLT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~ 129 (336)
+..+.+.+|..+....+.-....+.||..-|.+.|||...
T Consensus 20 ~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~ 59 (129)
T 2y75_A 20 KKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSI 59 (129)
T ss_dssp HTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred hCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEec
Confidence 3334678999998888877889999999999999999754
No 141
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=21.68 E-value=99 Score=23.68 Aligned_cols=45 Identities=11% Similarity=0.161 Sum_probs=35.3
Q ss_pred HHHHHHHhCCCcceeHHHHHHhccc----hHHHHHHHHHhhhhcccccCCCC
Q 019767 84 SIVKHYRENPSRKITFTDVRRTLVG----DVGSIRRVFDFLETWGLINYFAS 131 (336)
Q Consensus 84 ~ii~~yr~np~~yLT~t~~r~~l~g----Dv~~i~Rih~FLe~wGlINy~~~ 131 (336)
.|.-.|+.. .+|..+..+.+.- +-..+.++.+=|+..|+|--..+
T Consensus 15 vL~~L~~~~---~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~~ 63 (126)
T 1sd4_A 15 VMNIIWDKK---SVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKS 63 (126)
T ss_dssp HHHHHHHSS---SEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHhcC---CCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEeC
Confidence 345567743 5899999888863 68999999999999999976543
No 142
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=21.58 E-value=1.3e+02 Score=21.72 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=31.1
Q ss_pred ceeHHHHHHhccchHHHHHHHHHhhhhcccccCCC
Q 019767 96 KITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFA 130 (336)
Q Consensus 96 yLT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~ 130 (336)
.+|+++.-+.+.-+...+.|+..-|+..|+|....
T Consensus 34 ~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 34 GMRVSEIARELDLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 48999998888889999999999999999998644
No 143
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=21.45 E-value=87 Score=26.28 Aligned_cols=39 Identities=13% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhC-CCHHHHHHHhCCCCHHHHHHHHhcC
Q 019767 218 EKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIKL 257 (336)
Q Consensus 218 ~eE~~~LLeav~~yG-~nW~~IA~~VgtrT~~qC~~hf~~l 257 (336)
++-+..||+.++..| -.|.+||+.+|- |+..|..|..+|
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~lgl-S~~tv~~rl~~L 65 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKITGL-AESTIHERIRKL 65 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHTS-CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHHHHHH
No 144
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=21.41 E-value=1.5e+02 Score=22.94 Aligned_cols=40 Identities=10% Similarity=0.096 Sum_probs=34.9
Q ss_pred CCCcceeHHHHHHhccchHHHHHHHHHhhhhcccccCCCC
Q 019767 92 NPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFAS 131 (336)
Q Consensus 92 np~~yLT~t~~r~~l~gDv~~i~Rih~FLe~wGlINy~~~ 131 (336)
++...+|.++..+.+.-+-.++.|+..=|+..|||--..+
T Consensus 49 ~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~ 88 (127)
T 2frh_A 49 NKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRN 88 (127)
T ss_dssp TCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCC
T ss_pred ccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCC
Confidence 4446799999988888899999999999999999988665
No 145
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.69 E-value=1.7e+02 Score=24.30 Aligned_cols=51 Identities=22% Similarity=0.327 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHhCCCcceeHHHHHHhcc-------c------hHHHHHHHHHhhhhcccccCCC
Q 019767 77 VYRYYRDSIVKHYRENPSRKITFTDVRRTLV-------G------DVGSIRRVFDFLETWGLINYFA 130 (336)
Q Consensus 77 ~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~-------g------Dv~~i~Rih~FLe~wGlINy~~ 130 (336)
.|...+|..+. |.. .+.-|..+.++.|. | +-..|-.|.++|...|+||=..
T Consensus 3 ~~~~a~~~Al~-~Ls--~r~~S~~EL~~kL~~k~~~~~g~e~~~~~~~~i~~vl~~l~~~g~ldD~r 66 (159)
T 3c1d_A 3 AYARLLDRAVR-ILA--VRDHSEQELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGYLDDSR 66 (159)
T ss_dssp HHHHHHHHHHH-HHT--TSCCCHHHHHHHHHCC-----------CCHHHHHHHHHHHHHTTSCCHHH
T ss_pred hHHHHHHHHHH-Hhh--cccccHHHHHHHHHHHhhcccCccccCCCHHHHHHHHHHHHHcCCcCHHH
Confidence 46677777665 332 56667788877764 3 5678999999999999998443
Done!