Query 019768
Match_columns 336
No_of_seqs 411 out of 2908
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 04:23:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019768.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019768hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0703 Predicted GTPase-activ 100.0 2.3E-46 4.9E-51 333.5 12.7 119 16-138 9-127 (287)
2 PF01412 ArfGap: Putative GTPa 100.0 2.5E-41 5.4E-46 270.5 5.6 114 21-136 2-115 (116)
3 smart00105 ArfGap Putative GTP 100.0 1.3E-39 2.8E-44 258.8 8.5 108 30-138 1-108 (112)
4 COG5347 GTPase-activating prot 100.0 3.3E-36 7.1E-41 276.4 10.4 118 19-137 7-125 (319)
5 PLN03119 putative ADP-ribosyla 100.0 5.1E-36 1.1E-40 284.7 8.5 123 12-138 3-125 (648)
6 PLN03131 hypothetical protein; 100.0 1.3E-35 2.8E-40 284.0 8.1 123 12-138 3-125 (705)
7 KOG0705 GTPase-activating prot 100.0 1E-31 2.2E-36 254.7 6.7 118 19-138 500-617 (749)
8 KOG0704 ADP-ribosylation facto 100.0 1.7E-31 3.6E-36 240.2 7.3 87 17-104 4-90 (386)
9 PLN03114 ADP-ribosylation fact 100.0 2.4E-30 5.3E-35 234.4 10.2 116 19-135 9-126 (395)
10 KOG1030 Predicted Ca2+-depende 100.0 1E-29 2.3E-34 209.7 13.0 162 175-336 1-164 (168)
11 KOG0706 Predicted GTPase-activ 100.0 2.9E-30 6.2E-35 239.7 7.4 87 18-105 9-95 (454)
12 cd04038 C2_ArfGAP C2 domain pr 99.9 1.1E-25 2.4E-30 187.1 17.2 145 179-323 1-145 (145)
13 KOG0521 Putative GTPase activa 99.9 2.4E-25 5.1E-30 227.0 3.7 117 22-139 416-533 (785)
14 cd04016 C2_Tollip C2 domain pr 99.9 2E-22 4.3E-27 162.4 13.7 118 180-331 2-121 (121)
15 KOG0818 GTPase-activating prot 99.9 1E-22 2.2E-27 190.8 3.7 111 29-140 5-123 (669)
16 KOG1117 Rho- and Arf-GTPase ac 99.8 7.9E-22 1.7E-26 194.4 6.3 123 21-145 287-411 (1186)
17 cd08682 C2_Rab11-FIP_classI C2 99.8 1.1E-20 2.3E-25 153.9 11.9 102 182-293 1-109 (126)
18 cd08681 C2_fungal_Inn1p-like C 99.8 1.6E-20 3.5E-25 150.9 10.9 115 180-331 1-118 (118)
19 cd08379 C2D_MCTP_PRT_plant C2 99.8 6.5E-20 1.4E-24 148.7 12.3 101 181-293 1-111 (126)
20 cd04024 C2A_Synaptotagmin-like 99.8 9.7E-20 2.1E-24 148.3 13.2 124 180-331 1-128 (128)
21 cd08376 C2B_MCTP_PRT C2 domain 99.8 1.5E-19 3.2E-24 144.8 13.7 88 181-268 1-90 (116)
22 cd08375 C2_Intersectin C2 doma 99.8 1.7E-19 3.6E-24 148.7 14.0 95 175-269 10-106 (136)
23 cd04042 C2A_MCTP_PRT C2 domain 99.8 2E-19 4.2E-24 145.4 14.0 119 181-333 1-121 (121)
24 cd08391 C2A_C2C_Synaptotagmin_ 99.8 1E-19 2.3E-24 146.6 12.4 113 180-331 1-121 (121)
25 cd04019 C2C_MCTP_PRT_plant C2 99.8 4E-19 8.6E-24 148.8 14.0 105 181-293 1-108 (150)
26 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 3.3E-19 7.2E-24 144.1 12.6 99 182-292 2-103 (121)
27 cd08678 C2_C21orf25-like C2 do 99.8 5.4E-19 1.2E-23 143.8 13.6 121 182-335 1-123 (126)
28 cd04022 C2A_MCTP_PRT_plant C2 99.8 4.1E-19 8.9E-24 144.7 12.7 120 181-332 1-126 (127)
29 cd04044 C2A_Tricalbin-like C2 99.8 4.3E-19 9.4E-24 143.6 12.0 120 179-333 1-124 (124)
30 cd08377 C2C_MCTP_PRT C2 domain 99.8 8.8E-19 1.9E-23 140.9 13.4 118 180-332 1-119 (119)
31 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 7.9E-19 1.7E-23 144.1 12.0 125 181-332 1-133 (133)
32 cd08395 C2C_Munc13 C2 domain t 99.8 1E-18 2.2E-23 140.5 12.3 105 181-297 1-116 (120)
33 cd08378 C2B_MCTP_PRT_plant C2 99.8 9.5E-19 2.1E-23 141.4 11.7 101 182-293 2-103 (121)
34 cd08381 C2B_PI3K_class_II C2 d 99.8 7.7E-19 1.7E-23 142.1 10.8 101 179-291 12-121 (122)
35 cd04036 C2_cPLA2 C2 domain pre 99.8 1.6E-18 3.6E-23 139.5 12.3 86 182-268 2-92 (119)
36 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 3.2E-18 7E-23 138.6 13.7 101 181-293 1-103 (123)
37 cd08400 C2_Ras_p21A1 C2 domain 99.8 5.6E-18 1.2E-22 137.9 14.7 120 179-333 3-124 (126)
38 cd04039 C2_PSD C2 domain prese 99.8 1.7E-18 3.8E-23 137.0 10.8 94 180-273 1-101 (108)
39 cd04015 C2_plant_PLD C2 domain 99.8 8.5E-18 1.8E-22 142.0 15.5 123 177-332 4-158 (158)
40 cd04028 C2B_RIM1alpha C2 domai 99.8 2.1E-18 4.7E-23 143.1 11.5 107 179-297 28-142 (146)
41 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 6.9E-18 1.5E-22 136.3 13.5 100 182-292 2-103 (121)
42 cd08677 C2A_Synaptotagmin-13 C 99.8 2.3E-18 4.9E-23 137.1 10.4 91 176-268 10-107 (118)
43 cd04017 C2D_Ferlin C2 domain f 99.8 9.9E-18 2.1E-22 138.1 14.3 122 181-335 2-135 (135)
44 cd04029 C2A_SLP-4_5 C2 domain 99.8 2.8E-18 6E-23 139.5 10.7 105 175-291 10-124 (125)
45 cd04014 C2_PKC_epsilon C2 doma 99.8 1.4E-17 3E-22 136.6 14.5 117 178-333 2-130 (132)
46 cd08394 C2A_Munc13 C2 domain f 99.8 9.8E-18 2.1E-22 134.8 12.8 105 180-298 2-106 (127)
47 cd08688 C2_KIAA0528-like C2 do 99.8 4.4E-18 9.6E-23 135.1 10.8 103 182-293 1-109 (110)
48 cd04050 C2B_Synaptotagmin-like 99.8 8.5E-18 1.8E-22 132.4 10.8 99 182-293 2-102 (105)
49 cd04046 C2_Calpain C2 domain p 99.7 3E-17 6.5E-22 133.6 14.3 121 179-333 2-123 (126)
50 cd04010 C2B_RasA3 C2 domain se 99.7 7.2E-18 1.6E-22 140.6 10.8 104 181-296 1-125 (148)
51 cd08373 C2A_Ferlin C2 domain f 99.7 3.1E-17 6.7E-22 133.6 13.5 115 186-335 2-119 (127)
52 cd08393 C2A_SLP-1_2 C2 domain 99.7 8.1E-18 1.8E-22 136.7 10.0 102 178-291 13-124 (125)
53 cd08392 C2A_SLP-3 C2 domain fi 99.7 1.3E-17 2.8E-22 136.0 10.8 105 178-291 13-127 (128)
54 cd08387 C2A_Synaptotagmin-8 C2 99.7 2.1E-17 4.6E-22 134.0 11.4 103 178-292 14-123 (124)
55 cd08382 C2_Smurf-like C2 domai 99.7 4.8E-17 1E-21 131.8 12.9 87 182-269 2-92 (123)
56 cd04041 C2A_fungal C2 domain f 99.7 1.7E-17 3.7E-22 132.0 9.8 89 180-268 1-98 (111)
57 cd08685 C2_RGS-like C2 domain 99.7 2E-17 4.2E-22 133.3 10.0 101 179-291 11-119 (119)
58 cd04011 C2B_Ferlin C2 domain s 99.7 3.6E-17 7.7E-22 130.1 11.3 101 181-293 5-110 (111)
59 cd04027 C2B_Munc13 C2 domain s 99.7 5.3E-17 1.1E-21 132.3 12.4 99 181-293 2-112 (127)
60 cd08680 C2_Kibra C2 domain fou 99.7 2.3E-17 4.9E-22 133.6 10.1 91 178-268 12-112 (124)
61 cd04013 C2_SynGAP_like C2 doma 99.7 2.5E-16 5.5E-21 130.4 15.9 132 175-335 6-142 (146)
62 cd04043 C2_Munc13_fungal C2 do 99.7 1.4E-16 3E-21 129.4 14.1 88 181-268 2-94 (126)
63 cd08385 C2A_Synaptotagmin-1-5- 99.7 4.5E-17 9.8E-22 132.0 11.2 101 179-291 15-122 (124)
64 cd04018 C2C_Ferlin C2 domain t 99.7 7.6E-17 1.7E-21 134.7 11.2 89 181-269 1-106 (151)
65 cd08388 C2A_Synaptotagmin-4-11 99.7 1.7E-16 3.7E-21 129.5 12.5 90 179-268 15-113 (128)
66 cd04032 C2_Perforin C2 domain 99.7 9E-17 2E-21 130.5 10.3 91 178-268 26-118 (127)
67 cd04030 C2C_KIAA1228 C2 domain 99.7 1.2E-16 2.7E-21 129.9 11.2 101 179-291 15-126 (127)
68 cd04031 C2A_RIM1alpha C2 domai 99.7 1E-16 2.2E-21 130.0 10.7 92 176-267 12-113 (125)
69 cd04049 C2_putative_Elicitor-r 99.7 1.3E-16 2.7E-21 129.4 11.0 102 180-293 1-108 (124)
70 KOG0702 Predicted GTPase-activ 99.7 3E-17 6.6E-22 154.6 8.3 126 15-143 7-135 (524)
71 cd08386 C2A_Synaptotagmin-7 C2 99.7 2.2E-16 4.7E-21 128.1 11.8 101 179-291 15-123 (125)
72 cd04045 C2C_Tricalbin-like C2 99.7 2E-16 4.4E-21 127.6 11.5 101 180-293 1-103 (120)
73 cd08521 C2A_SLP C2 domain firs 99.7 1.6E-16 3.6E-21 128.4 10.8 102 178-291 12-123 (123)
74 cd04051 C2_SRC2_like C2 domain 99.7 1.8E-16 4E-21 128.6 9.9 91 181-271 1-99 (125)
75 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 2.6E-16 5.6E-21 133.5 11.1 91 178-268 25-125 (162)
76 cd08389 C2A_Synaptotagmin-14_1 99.7 4.5E-16 9.8E-21 126.3 10.9 100 179-291 15-122 (124)
77 cd04052 C2B_Tricalbin-like C2 99.7 5.4E-16 1.2E-20 123.3 11.0 98 199-334 12-111 (111)
78 cd08407 C2B_Synaptotagmin-13 C 99.7 1.6E-16 3.5E-21 130.9 8.1 91 176-266 11-112 (138)
79 PLN03008 Phospholipase D delta 99.7 6.1E-16 1.3E-20 156.2 13.7 128 175-335 9-180 (868)
80 cd08406 C2B_Synaptotagmin-12 C 99.7 2.3E-16 5E-21 129.8 8.2 88 179-266 14-110 (136)
81 cd08390 C2A_Synaptotagmin-15-1 99.7 8.6E-16 1.9E-20 124.2 11.4 91 178-268 12-110 (123)
82 cd08690 C2_Freud-1 C2 domain f 99.7 3.5E-15 7.6E-20 124.9 15.3 124 180-324 4-143 (155)
83 KOG0696 Serine/threonine prote 99.7 4.2E-17 9.1E-22 151.8 3.4 115 180-307 180-302 (683)
84 cd08675 C2B_RasGAP C2 domain s 99.7 6.7E-16 1.5E-20 127.4 10.3 105 182-298 1-125 (137)
85 cd08383 C2A_RasGAP C2 domain ( 99.7 1.4E-15 3.1E-20 121.7 11.8 112 182-331 2-117 (117)
86 cd08676 C2A_Munc13-like C2 dom 99.6 8.3E-16 1.8E-20 128.7 10.2 88 177-268 25-143 (153)
87 cd08691 C2_NEDL1-like C2 domai 99.6 5.4E-15 1.2E-19 121.7 14.0 102 181-293 2-121 (137)
88 cd08402 C2B_Synaptotagmin-1 C2 99.6 5.8E-16 1.3E-20 127.6 8.3 92 175-266 10-110 (136)
89 cd04009 C2B_Munc13-like C2 dom 99.6 8.9E-16 1.9E-20 126.1 9.3 91 179-269 15-118 (133)
90 cd08384 C2B_Rabphilin_Doc2 C2 99.6 6.5E-16 1.4E-20 126.8 8.4 91 176-266 9-108 (133)
91 cd04026 C2_PKC_alpha_gamma C2 99.6 1.6E-15 3.5E-20 124.1 10.6 105 180-297 13-125 (131)
92 cd08404 C2B_Synaptotagmin-4 C2 99.6 7.9E-16 1.7E-20 126.8 8.8 88 179-266 14-110 (136)
93 cd08692 C2B_Tac2-N C2 domain s 99.6 8.6E-16 1.9E-20 125.2 8.6 94 174-267 8-110 (135)
94 PLN03200 cellulose synthase-in 99.6 9.3E-16 2E-20 167.6 10.1 121 175-333 1975-2101(2102)
95 cd04037 C2E_Ferlin C2 domain f 99.6 3.1E-15 6.6E-20 121.4 10.7 88 181-268 1-92 (124)
96 cd08405 C2B_Synaptotagmin-7 C2 99.6 1.3E-15 2.8E-20 125.5 8.4 90 178-267 13-111 (136)
97 cd04021 C2_E3_ubiquitin_ligase 99.6 1.2E-14 2.5E-19 118.2 13.7 89 181-270 3-92 (125)
98 cd04040 C2D_Tricalbin-like C2 99.6 6.2E-15 1.3E-19 117.7 11.7 87 182-268 1-90 (115)
99 cd08408 C2B_Synaptotagmin-14_1 99.6 2E-15 4.3E-20 124.7 8.5 91 177-267 12-112 (138)
100 cd08403 C2B_Synaptotagmin-3-5- 99.6 3.2E-15 7E-20 122.8 8.6 89 177-265 11-108 (134)
101 KOG1028 Ca2+-dependent phospho 99.6 1.5E-14 3.3E-19 140.0 13.9 103 179-293 166-275 (421)
102 cd00275 C2_PLC_like C2 domain 99.6 5.7E-14 1.2E-18 114.1 13.0 87 181-268 3-100 (128)
103 cd08410 C2B_Synaptotagmin-17 C 99.6 1.5E-14 3.2E-19 119.2 9.6 88 177-264 11-107 (135)
104 cd08409 C2B_Synaptotagmin-15 C 99.6 1E-14 2.3E-19 120.3 8.3 89 179-267 14-110 (137)
105 cd08686 C2_ABR C2 domain in th 99.6 2.2E-14 4.8E-19 113.9 9.6 80 182-266 1-92 (118)
106 cd04048 C2A_Copine C2 domain f 99.6 2.2E-14 4.7E-19 115.6 9.6 85 185-269 5-102 (120)
107 cd00276 C2B_Synaptotagmin C2 d 99.5 1.4E-14 3.1E-19 118.6 7.7 88 179-266 13-109 (134)
108 cd04035 C2A_Rabphilin_Doc2 C2 99.5 8.2E-14 1.8E-18 112.7 10.7 92 178-270 13-114 (123)
109 cd04047 C2B_Copine C2 domain s 99.5 1.1E-13 2.4E-18 109.6 8.8 85 183-268 3-99 (110)
110 KOG1011 Neurotransmitter relea 99.5 9E-14 2E-18 134.7 7.5 130 172-320 287-428 (1283)
111 PF00168 C2: C2 domain; Inter 99.5 3.6E-13 7.8E-18 100.6 8.8 80 182-261 1-85 (85)
112 KOG2059 Ras GTPase-activating 99.4 4.1E-13 8.8E-18 131.6 7.7 101 180-293 5-107 (800)
113 cd08374 C2F_Ferlin C2 domain s 99.3 1.4E-11 3E-16 100.4 9.7 89 182-270 2-124 (133)
114 smart00239 C2 Protein kinase C 99.3 2.3E-11 5E-16 93.0 10.1 89 182-270 2-95 (101)
115 PLN02270 phospholipase D alpha 99.3 3.2E-11 7E-16 122.3 13.3 127 177-336 5-152 (808)
116 cd00030 C2 C2 domain. The C2 d 99.3 3.2E-11 6.9E-16 91.8 10.1 87 182-268 1-90 (102)
117 PLN02223 phosphoinositide phos 99.2 2.9E-10 6.3E-15 111.2 13.2 93 179-271 408-512 (537)
118 COG5038 Ca2+-dependent lipid-b 99.2 1.5E-10 3.3E-15 119.5 11.3 95 175-269 431-529 (1227)
119 KOG1028 Ca2+-dependent phospho 99.2 8.7E-11 1.9E-15 113.9 9.0 92 175-266 293-393 (421)
120 KOG1031 Predicted Ca2+-depende 99.1 1.3E-10 2.8E-15 112.0 9.0 130 179-317 2-137 (1169)
121 PLN02952 phosphoinositide phos 99.1 6.8E-10 1.5E-14 110.7 12.8 92 179-270 469-573 (599)
122 COG5038 Ca2+-dependent lipid-b 99.1 2.4E-10 5.3E-15 118.0 8.4 98 173-270 1033-1133(1227)
123 KOG0169 Phosphoinositide-speci 99.0 2.1E-09 4.5E-14 107.4 9.4 93 181-273 617-721 (746)
124 PLN02230 phosphoinositide phos 99.0 1.9E-09 4.1E-14 107.4 8.9 95 179-273 468-575 (598)
125 PLN02222 phosphoinositide phos 98.9 4.6E-09 9.9E-14 104.5 9.9 94 179-272 451-557 (581)
126 cd08689 C2_fungal_Pkc1p C2 dom 98.9 4.5E-09 9.6E-14 81.1 6.8 86 182-272 1-91 (109)
127 PLN02228 Phosphoinositide phos 98.8 1E-08 2.2E-13 101.7 9.5 94 179-272 430-537 (567)
128 KOG1328 Synaptic vesicle prote 98.8 1.3E-09 2.8E-14 107.5 1.5 89 180-268 947-1048(1103)
129 PLN02352 phospholipase D epsil 98.8 5.5E-08 1.2E-12 98.9 11.9 118 178-335 8-133 (758)
130 KOG1264 Phospholipase C [Lipid 98.7 3.3E-08 7.1E-13 98.8 9.1 92 180-271 1065-1164(1267)
131 KOG1328 Synaptic vesicle prote 98.7 4.5E-09 9.7E-14 103.8 0.7 118 182-317 116-302 (1103)
132 KOG0905 Phosphoinositide 3-kin 98.4 2E-07 4.3E-12 96.6 4.1 103 179-293 1523-1635(1639)
133 KOG1326 Membrane-associated pr 98.4 2.6E-07 5.7E-12 94.5 4.1 89 179-267 612-704 (1105)
134 KOG2059 Ras GTPase-activating 98.3 1.1E-06 2.3E-11 87.2 5.6 98 184-293 135-253 (800)
135 cd08683 C2_C2cd3 C2 domain fou 98.1 5.5E-06 1.2E-10 66.1 6.3 98 182-290 1-142 (143)
136 KOG1011 Neurotransmitter relea 98.1 4.8E-06 1E-10 81.9 6.9 113 180-304 1125-1248(1283)
137 PLN02964 phosphatidylserine de 98.1 5E-06 1.1E-10 84.1 7.2 91 174-270 48-140 (644)
138 KOG1013 Synaptic vesicle prote 97.9 1.7E-05 3.8E-10 72.5 5.5 87 178-264 231-326 (362)
139 KOG2060 Rab3 effector RIM1 and 97.7 1.4E-05 3E-10 74.4 1.9 108 175-293 264-379 (405)
140 KOG1326 Membrane-associated pr 97.6 6.6E-05 1.4E-09 77.4 4.8 130 182-315 848-1021(1105)
141 KOG1013 Synaptic vesicle prote 97.6 1.2E-05 2.6E-10 73.6 -0.9 90 180-269 93-192 (362)
142 KOG1327 Copine [Signal transdu 97.2 0.00089 1.9E-08 65.8 6.8 84 185-269 141-236 (529)
143 cd08684 C2A_Tac2-N C2 domain f 97.1 0.0013 2.7E-08 49.2 5.1 84 183-268 2-93 (103)
144 KOG3837 Uncharacterized conser 97.0 0.00049 1.1E-08 64.9 3.3 89 181-269 368-475 (523)
145 KOG1265 Phospholipase C [Lipid 96.7 0.0034 7.4E-08 64.4 6.2 89 178-273 701-800 (1189)
146 KOG1452 Predicted Rho GTPase-a 95.8 0.013 2.8E-07 53.7 4.4 83 174-257 45-131 (442)
147 PF15627 CEP76-C2: CEP76 C2 do 95.7 0.14 3E-06 42.8 10.1 88 180-267 9-115 (156)
148 cd08693 C2_PI3K_class_I_beta_d 95.4 0.11 2.5E-06 44.4 8.9 86 181-267 9-120 (173)
149 cd08398 C2_PI3K_class_I_alpha 95.3 0.14 3E-06 43.2 8.9 85 180-267 8-106 (158)
150 cd08380 C2_PI3K_like C2 domain 95.2 0.11 2.3E-06 43.5 8.1 87 181-267 9-107 (156)
151 KOG0521 Putative GTPase activa 94.9 0.0049 1.1E-07 64.4 -1.2 74 29-104 627-701 (785)
152 cd08397 C2_PI3K_class_III C2 d 94.9 0.099 2.1E-06 44.1 6.9 69 199-267 29-107 (159)
153 PF12416 DUF3668: Cep120 prote 94.7 0.48 1E-05 44.9 11.6 102 182-293 2-113 (340)
154 cd04012 C2A_PI3K_class_II C2 d 94.4 0.38 8.1E-06 41.0 9.4 90 178-267 6-119 (171)
155 PF10358 NT-C2: N-terminal C2 93.7 2.3 5.1E-05 34.6 12.7 88 179-269 6-106 (143)
156 cd08399 C2_PI3K_class_I_gamma 92.4 1.1 2.3E-05 38.5 8.9 87 181-267 11-122 (178)
157 PF00792 PI3K_C2: Phosphoinosi 92.1 0.73 1.6E-05 37.9 7.4 54 214-267 23-85 (142)
158 PF15625 CC2D2AN-C2: CC2D2A N- 92.0 2 4.2E-05 36.5 10.1 69 199-268 36-107 (168)
159 cd08695 C2_Dock-B C2 domains f 91.8 2.3 4.9E-05 36.9 10.2 54 212-265 54-112 (189)
160 cd08694 C2_Dock-A C2 domains f 89.7 4.8 0.0001 35.0 10.4 55 211-265 53-114 (196)
161 PF14429 DOCK-C2: C2 domain in 89.2 1.1 2.4E-05 38.6 6.2 55 212-266 60-120 (184)
162 KOG1327 Copine [Signal transdu 89.0 0.81 1.8E-05 45.5 5.7 58 213-270 43-105 (529)
163 cd08687 C2_PKN-like C2 domain 88.9 3.6 7.9E-05 31.2 7.8 63 200-267 9-72 (98)
164 smart00142 PI3K_C2 Phosphoinos 84.7 5.9 0.00013 30.4 7.4 68 182-249 13-91 (100)
165 PF07162 B9-C2: Ciliary basal 84.7 11 0.00023 31.9 9.7 76 185-265 7-102 (168)
166 PF00643 zf-B_box: B-box zinc 82.9 0.98 2.1E-05 28.6 2.0 34 31-64 2-36 (42)
167 PRK12495 hypothetical protein; 82.1 1.1 2.5E-05 39.2 2.6 37 21-61 28-67 (226)
168 PF11781 RRN7: RNA polymerase 82.1 1.2 2.6E-05 27.6 2.0 26 30-58 6-31 (36)
169 cd08679 C2_DOCK180_related C2 81.2 5.3 0.00011 34.1 6.5 53 213-266 55-115 (178)
170 KOG2419 Phosphatidylserine dec 79.9 0.18 4E-06 50.5 -3.3 82 173-255 273-361 (975)
171 cd08696 C2_Dock-C C2 domains f 79.2 6.7 0.00014 33.7 6.3 56 211-266 54-118 (179)
172 PRK00085 recO DNA repair prote 77.4 1.4 2.9E-05 39.7 1.7 31 29-59 146-177 (247)
173 cd08697 C2_Dock-D C2 domains f 77.2 9.2 0.0002 33.0 6.7 56 211-266 56-123 (185)
174 PF11618 DUF3250: Protein of u 75.8 17 0.00038 28.3 7.3 66 203-270 2-76 (107)
175 KOG1329 Phospholipase D1 [Lipi 73.0 4.8 0.0001 42.4 4.5 82 200-293 138-221 (887)
176 PF08271 TF_Zn_Ribbon: TFIIB z 71.6 2.4 5.1E-05 27.2 1.3 25 34-59 2-26 (43)
177 TIGR00613 reco DNA repair prot 71.6 3.3 7.2E-05 37.0 2.7 33 29-61 144-177 (241)
178 PF01286 XPA_N: XPA protein N- 70.8 0.92 2E-05 27.7 -0.7 27 33-59 4-31 (34)
179 PRK11019 hypothetical protein; 61.9 0.76 1.6E-05 34.6 -2.9 49 19-68 19-73 (88)
180 COG1997 RPL43A Ribosomal prote 61.2 12 0.00027 27.9 3.4 39 19-59 21-60 (89)
181 COG1381 RecO Recombinational D 59.9 4.7 0.0001 36.6 1.3 30 30-59 152-182 (251)
182 PTZ00447 apical membrane antig 59.7 87 0.0019 29.8 9.4 66 200-266 74-141 (508)
183 TIGR02419 C4_traR_proteo phage 56.6 2.7 5.8E-05 29.5 -0.7 33 29-62 28-62 (63)
184 smart00401 ZnF_GATA zinc finge 53.8 12 0.00027 25.0 2.3 37 31-67 2-40 (52)
185 PF10764 Gin: Inhibitor of sig 52.3 9.1 0.0002 25.1 1.3 26 34-60 1-26 (46)
186 PF00320 GATA: GATA zinc finge 52.2 9.1 0.0002 23.5 1.3 31 35-65 1-33 (36)
187 PF01258 zf-dskA_traR: Prokary 51.6 1 2.2E-05 27.7 -3.1 30 33-62 4-34 (36)
188 cd07171 NR_DBD_ER DNA-binding 51.6 9.7 0.00021 28.2 1.6 31 31-64 2-32 (82)
189 PF07282 OrfB_Zn_ribbon: Putat 50.9 11 0.00023 26.6 1.7 25 32-58 28-52 (69)
190 PF12760 Zn_Tnp_IS1595: Transp 50.1 21 0.00047 23.0 2.9 34 25-59 11-44 (46)
191 PF14909 SPATA6: Spermatogenes 49.4 1.4E+02 0.003 24.6 8.1 69 199-268 19-100 (140)
192 COG1734 DksA DnaK suppressor p 46.8 2.9 6.2E-05 33.5 -2.0 30 34-63 82-112 (120)
193 PF13119 DUF3973: Domain of un 46.6 9.2 0.0002 23.9 0.6 13 53-65 2-14 (41)
194 PRK11788 tetratricopeptide rep 46.5 19 0.0004 34.1 3.1 36 20-62 342-378 (389)
195 smart00782 PhnA_Zn_Ribbon PhnA 45.8 12 0.00026 24.6 1.1 31 30-60 5-44 (47)
196 cd06968 NR_DBD_ROR DNA-binding 45.3 14 0.00031 28.1 1.7 31 31-64 4-34 (95)
197 cd07173 NR_DBD_AR DNA-binding 44.1 14 0.0003 27.4 1.4 32 30-64 1-32 (82)
198 PF14924 DUF4497: Protein of u 43.4 40 0.00087 26.4 4.1 56 238-293 28-88 (112)
199 cd07170 NR_DBD_ERR DNA-binding 42.8 15 0.00033 28.1 1.5 30 32-64 4-33 (97)
200 smart00659 RPOLCX RNA polymera 42.4 13 0.00028 24.1 0.9 22 34-58 4-25 (44)
201 PF14803 Nudix_N_2: Nudix N-te 41.7 8.5 0.00018 23.4 -0.0 30 33-63 1-33 (34)
202 KOG3507 DNA-directed RNA polym 41.1 11 0.00023 26.0 0.3 23 33-58 21-43 (62)
203 PTZ00255 60S ribosomal protein 41.0 38 0.00082 25.6 3.3 40 18-59 21-61 (90)
204 PRK13715 conjugal transfer pro 39.5 4.7 0.0001 29.2 -1.7 36 32-67 34-70 (73)
205 KOG0694 Serine/threonine prote 39.3 8 0.00017 39.7 -0.7 57 199-256 27-84 (694)
206 cd07160 NR_DBD_LXR DNA-binding 38.9 22 0.00049 27.4 1.9 31 31-64 17-47 (101)
207 cd06966 NR_DBD_CAR DNA-binding 37.8 19 0.00041 27.4 1.4 29 33-64 1-29 (94)
208 PHA00080 DksA-like zinc finger 37.6 9.2 0.0002 27.6 -0.4 34 30-64 29-64 (72)
209 KOG3362 Predicted BBOX Zn-fing 37.5 11 0.00024 30.8 0.1 34 30-64 116-150 (156)
210 PF14376 Haem_bd: Haem-binding 37.5 40 0.00088 27.5 3.3 26 17-46 30-55 (137)
211 COG2174 RPL34A Ribosomal prote 35.2 22 0.00047 26.8 1.2 34 27-60 29-79 (93)
212 PF01780 Ribosomal_L37ae: Ribo 35.1 24 0.00051 26.7 1.4 40 18-59 20-60 (90)
213 TIGR02890 spore_yteA sporulati 34.0 14 0.0003 31.1 0.1 34 30-64 84-119 (159)
214 cd07161 NR_DBD_EcR DNA-binding 34.0 30 0.00064 26.2 1.9 29 33-64 2-30 (91)
215 cd07169 NR_DBD_GCNF_like DNA-b 33.7 26 0.00056 26.4 1.5 32 30-64 4-35 (90)
216 PF06827 zf-FPG_IleRS: Zinc fi 33.2 21 0.00045 20.7 0.7 28 33-60 2-29 (30)
217 PRK00423 tfb transcription ini 32.5 33 0.00071 32.1 2.3 30 31-61 10-39 (310)
218 cd07162 NR_DBD_PXR DNA-binding 32.4 31 0.00067 25.8 1.7 28 34-64 1-28 (87)
219 PF08274 PhnA_Zn_Ribbon: PhnA 32.1 24 0.00051 20.9 0.8 23 34-59 4-26 (30)
220 TIGR03711 acc_sec_asp3 accesso 31.7 1.6E+02 0.0035 24.0 5.8 57 277-333 32-89 (135)
221 KOG4269 Rac GTPase-activating 31.7 25 0.00053 37.4 1.4 87 176-267 755-856 (1112)
222 cd07163 NR_DBD_TLX DNA-binding 31.2 27 0.00059 26.4 1.3 31 31-64 5-35 (92)
223 cd07157 2DBD_NR_DBD1 The first 30.9 27 0.00058 26.1 1.1 28 34-64 2-29 (86)
224 COG1645 Uncharacterized Zn-fin 30.3 45 0.00097 27.0 2.4 37 18-58 11-50 (131)
225 TIGR01384 TFS_arch transcripti 30.1 44 0.00095 25.6 2.3 28 32-59 62-97 (104)
226 cd07172 NR_DBD_GR_PR DNA-bindi 29.8 37 0.0008 24.8 1.7 29 33-64 3-31 (78)
227 COG2158 Uncharacterized protei 29.8 37 0.0008 26.3 1.7 31 35-67 45-77 (112)
228 PRK00420 hypothetical protein; 29.4 44 0.00095 26.4 2.2 40 19-61 7-49 (112)
229 PRK10778 dksA RNA polymerase-b 29.1 17 0.00036 30.4 -0.3 38 29-66 108-146 (151)
230 cd07156 NR_DBD_VDR_like The DN 28.6 38 0.00083 24.2 1.6 27 35-64 1-27 (72)
231 cd06955 NR_DBD_VDR DNA-binding 27.9 39 0.00085 26.4 1.7 30 32-64 6-35 (107)
232 cd07158 NR_DBD_Ppar_like The D 27.5 36 0.00079 24.4 1.3 27 35-64 1-27 (73)
233 cd06956 NR_DBD_RXR DNA-binding 26.7 47 0.001 24.1 1.8 28 34-64 2-29 (77)
234 PF01060 DUF290: Transthyretin 26.5 1E+02 0.0023 22.3 3.7 27 238-264 11-37 (80)
235 cd07165 NR_DBD_DmE78_like DNA- 26.3 35 0.00076 25.1 1.1 27 35-64 1-27 (81)
236 smart00834 CxxC_CXXC_SSSS Puta 26.1 23 0.0005 21.8 0.1 27 34-60 7-34 (41)
237 PF03604 DNA_RNApol_7kD: DNA d 26.1 15 0.00032 22.1 -0.8 22 34-58 2-23 (32)
238 cd06962 NR_DBD_FXR DNA-binding 25.3 38 0.00082 25.1 1.1 29 33-64 2-30 (84)
239 cd07168 NR_DBD_DHR4_like DNA-b 25.1 60 0.0013 24.4 2.2 31 31-64 5-35 (90)
240 PF09297 zf-NADH-PPase: NADH p 24.7 39 0.00086 19.9 0.9 24 31-60 2-29 (32)
241 cd00202 ZnF_GATA Zinc finger D 24.7 36 0.00077 23.0 0.8 33 34-66 1-35 (54)
242 cd06970 NR_DBD_PNR DNA-binding 24.6 44 0.00095 25.3 1.4 31 31-64 5-35 (92)
243 TIGR00280 L37a ribosomal prote 24.6 1.1E+02 0.0024 23.1 3.5 40 18-59 20-60 (91)
244 TIGR00100 hypA hydrogenase nic 24.6 51 0.0011 26.0 1.8 45 29-77 67-112 (115)
245 PHA02942 putative transposase; 24.6 46 0.001 32.2 1.9 24 33-59 326-349 (383)
246 PRK00432 30S ribosomal protein 24.4 55 0.0012 21.7 1.7 26 30-58 18-43 (50)
247 PF13453 zf-TFIIB: Transcripti 24.3 60 0.0013 20.3 1.8 28 34-61 1-28 (41)
248 smart00290 ZnF_UBP Ubiquitin C 24.3 52 0.0011 21.2 1.6 16 34-49 1-16 (50)
249 cd06965 NR_DBD_Ppar DNA-bindin 24.1 37 0.0008 25.2 0.9 27 35-64 2-28 (84)
250 cd07166 NR_DBD_REV_ERB DNA-bin 24.1 36 0.00079 25.5 0.8 30 32-64 3-32 (89)
251 cd06967 NR_DBD_TR2_like DNA-bi 23.9 41 0.00088 25.1 1.1 29 33-64 4-32 (87)
252 PF04770 ZF-HD_dimer: ZF-HD pr 22.7 31 0.00068 23.8 0.2 28 37-65 24-52 (60)
253 smart00399 ZnF_C4 c4 zinc fing 22.7 49 0.0011 23.4 1.2 27 35-64 2-28 (70)
254 cd06960 NR_DBD_HNF4A DNA-bindi 22.4 51 0.0011 23.8 1.3 27 35-64 1-27 (76)
255 cd07164 NR_DBD_PNR_like_1 DNA- 22.3 51 0.0011 24.0 1.3 27 35-64 1-27 (78)
256 cd07179 2DBD_NR_DBD2 The secon 22.3 59 0.0013 23.4 1.6 27 35-64 1-27 (74)
257 cd03031 GRX_GRX_like Glutaredo 22.1 84 0.0018 26.0 2.7 38 19-65 86-123 (147)
258 cd06963 NR_DBD_GR_like The DNA 22.1 62 0.0013 23.2 1.7 27 35-64 1-27 (73)
259 cd06958 NR_DBD_COUP_TF DNA-bin 22.0 50 0.0011 23.7 1.2 27 35-64 1-27 (73)
260 PRK03976 rpl37ae 50S ribosomal 22.0 1.1E+02 0.0025 23.1 3.1 40 18-59 21-61 (90)
261 PRK12336 translation initiatio 22.0 66 0.0014 28.1 2.2 46 20-66 84-132 (201)
262 TIGR00373 conserved hypothetic 22.0 27 0.00058 29.3 -0.3 40 21-61 95-137 (158)
263 PF06677 Auto_anti-p27: Sjogre 21.7 53 0.0011 20.9 1.1 24 32-58 17-40 (41)
264 PF00641 zf-RanBP: Zn-finger i 21.4 28 0.00061 20.1 -0.2 17 28-44 14-30 (30)
265 cd06959 NR_DBD_EcR_like The DN 21.3 64 0.0014 23.1 1.6 27 35-64 2-28 (73)
266 TIGR00311 aIF-2beta translatio 21.1 82 0.0018 25.6 2.4 44 20-64 83-129 (133)
267 smart00440 ZnF_C2C2 C2C2 Zinc 20.8 90 0.0019 19.5 2.0 26 34-59 2-35 (40)
268 PF06689 zf-C4_ClpX: ClpX C4-t 20.7 75 0.0016 20.0 1.7 29 33-61 2-33 (41)
269 cd07155 NR_DBD_ER_like DNA-bin 20.7 51 0.0011 23.8 1.0 27 35-64 1-27 (75)
270 PF09723 Zn-ribbon_8: Zinc rib 20.2 48 0.001 21.0 0.7 27 34-60 7-34 (42)
271 PF14471 DUF4428: Domain of un 20.1 26 0.00057 23.4 -0.6 30 34-64 1-32 (51)
No 1
>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-46 Score=333.47 Aligned_cols=119 Identities=56% Similarity=1.093 Sum_probs=114.6
Q ss_pred CCChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhcccc
Q 019768 16 PSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNS 95 (336)
Q Consensus 16 ~~~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~ 95 (336)
.++++++|++||+.|+|+.|||||+++|+|||+|+|||||++||||||+||+||||||||+||.|++|+|+.|+.+ ||.
T Consensus 9 ~~~~~~~l~~Ll~~~~N~~CADC~a~~P~WaSwnlGvFiC~~C~giHR~lg~hiSkVkSv~LD~W~~eqv~~m~~~-GN~ 87 (287)
T KOG0703|consen 9 NERNKRRLRELLREPDNKVCADCGAKGPRWASWNLGVFICLRCAGIHRSLGVHISKVKSVTLDEWTDEQVDFMISM-GNA 87 (287)
T ss_pred cchHHHHHHHHHcCcccCcccccCCCCCCeEEeecCeEEEeecccccccccchhheeeeeeccccCHHHHHHHHHH-cch
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999998 699
Q ss_pred ccchhhhhccCCCCCCCCCCCCHHHHHHHHHhhhccceecCCc
Q 019768 96 SANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPS 138 (336)
Q Consensus 96 ~~n~~~e~~~~~~~~~p~~~~~~~~r~~fI~~KY~~k~~~~~~ 138 (336)
+||++||+++|..+.+|.+++ .+++|||+|||+++|+.+.
T Consensus 88 ~an~~~ea~~p~~~~~p~~d~---~~e~FIR~KYE~kkf~~~~ 127 (287)
T KOG0703|consen 88 KANSYYEAKLPDPFRRPGPDD---LVEQFIRDKYERKKFLDPE 127 (287)
T ss_pred hhhhhccccCCccccCCChHH---HHHHHHHHHHhhhhhccch
Confidence 999999999999999998875 8999999999999999986
No 2
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins []. The GTP-bound form of ARF is essential for the maintenance of normal Golgi morphology, it participates in recruitment of coat proteins which are required for budding and fission of membranes. Before the fusion with an acceptor compartment the membrane must be uncoated. This step required the hydrolysis of GTP associated to ARF. These proteins contain a characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) which displays some similarity to the C4-type GATA zinc finger. The ARFGAP domain display no obvious similarity to other GAP proteins. The 3D structure of the ARFGAP domain of the PYK2-associated protein beta has been solved []. It consists of a three-stranded beta-sheet surrounded by 5 alpha helices. The domain is organised around a central zinc atom which is coordinated by 4 cysteines. The ARFGAP domain is clearly unrelated to the other GAP proteins structures which are exclusively helical. Classical GAP proteins accelerate GTPase activity by supplying an arginine finger to the active site. The crystal structure of ARFGAP bound to ARF revealed that the ARFGAP domain does not supply an arginine to the active site which suggests a more indirect role of the ARFGAP domain in the GTPase hydrolysis []. The Rev protein of human immunodeficiency virus type 1 (HIV-1) facilitates nuclear export of unspliced and partly-spliced viral RNAs []. Rev contains an RNA-binding domain and an effector domain; the latter is believed to interact with a cellular cofactor required for the Rev response and hence HIV-1 replication. Human Rev interacting protein (hRIP) specifically interacts with the Rev effector. The amino acid sequence of hRIP is characterised by an N-terminal, C-4 class zinc finger motif.; GO: 0008060 ARF GTPase activator activity, 0008270 zinc ion binding, 0032312 regulation of ARF GTPase activity; PDB: 2P57_A 2CRR_A 2OWA_B 3O47_B 3DWD_A 1DCQ_A 2CRW_A 3MDB_D 3FEH_A 3LJU_X ....
Probab=100.00 E-value=2.5e-41 Score=270.49 Aligned_cols=114 Identities=52% Similarity=0.994 Sum_probs=96.0
Q ss_pred HHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhccccccchh
Q 019768 21 GRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAI 100 (336)
Q Consensus 21 ~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~~~n~~ 100 (336)
++|++|++.|+|+.|||||+++|+|||++||||||+.|||+||+||+|+|+||||+||+|+++||+.|+. |||..+|++
T Consensus 2 ~~l~~l~~~~~N~~CaDCg~~~p~w~s~~~GiflC~~Cag~HR~lg~~is~VkSi~~d~w~~~ev~~~~~-~GN~~~n~~ 80 (116)
T PF01412_consen 2 KILRELLKKPGNKVCADCGAPNPTWASLNYGIFLCLECAGIHRSLGVHISRVKSITMDNWSPEEVQRMRE-GGNKRANSI 80 (116)
T ss_dssp HHHHHHHCSTTCTB-TTT-SBS--EEETTTTEEE-HHHHHHHHHHTTTT--EEETTTS---HHHHHHHHH-SHHHHHHHH
T ss_pred HHHHHHHcCcCcCcCCCCCCCCCCEEEeecChhhhHHHHHHHHHhcccchhccccccCCCCHHHHHHHHH-HChHHHHHH
Confidence 6799999999999999999999999999999999999999999999999999999999999999999976 599999999
Q ss_pred hhhccCCCCCCCCCCCCHHHHHHHHHhhhccceecC
Q 019768 101 YEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLK 136 (336)
Q Consensus 101 ~e~~~~~~~~~p~~~~~~~~r~~fI~~KY~~k~~~~ 136 (336)
||++ ++...+|.++++.+.+++||++||++++|+.
T Consensus 81 ~e~~-~~~~~~~~~~~~~~~~~~fI~~KY~~k~f~~ 115 (116)
T PF01412_consen 81 WEAN-SPPPKKPPPSSDQEKREQFIRAKYVEKAFIS 115 (116)
T ss_dssp HTTT-STTTTTHCTTSHHHHHHHHHHHHHTTHTTS-
T ss_pred HHcC-CCCCCCCCCCCcHHHHHHHHHHHHHhhhhcc
Confidence 9999 4334677778888899999999999999975
No 3
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF. Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.
Probab=100.00 E-value=1.3e-39 Score=258.83 Aligned_cols=108 Identities=45% Similarity=0.910 Sum_probs=100.1
Q ss_pred CCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhccccccchhhhhccCCCC
Q 019768 30 RDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGV 109 (336)
Q Consensus 30 ~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~~~n~~~e~~~~~~~ 109 (336)
|+|+.||||++++|+|||+|+|||||+.|||+||.||+|||+||||+||+|++++|+.|+ .|||.++|++||+++|+..
T Consensus 1 ~~N~~CaDC~~~~p~w~s~~~GifvC~~CsgiHR~lg~his~VkSl~md~w~~~~i~~~~-~~GN~~~n~~~e~~~~~~~ 79 (112)
T smart00105 1 PGNKKCFDCGAPNPTWASVNLGVFLCIECSGIHRSLGVHISKVRSLTLDTWTEEELRLLQ-KGGNENANSIWESNLDDFS 79 (112)
T ss_pred CCCCcccCCCCCCCCcEEeccceeEhHHhHHHHHhcCCCcCeeeecccCCCCHHHHHHHH-HhhhHHHHHHHHhhCCccc
Confidence 689999999999999999999999999999999999999999999999999999999997 4799999999999999875
Q ss_pred CCCCCCCCHHHHHHHHHhhhccceecCCc
Q 019768 110 SKPGPDSSHEIRSKFIRSKYELQEFLKPS 138 (336)
Q Consensus 110 ~~p~~~~~~~~r~~fI~~KY~~k~~~~~~ 138 (336)
.+|.+.+....+++||+.||++++|+.+.
T Consensus 80 ~~~~~~~~~~~~~~fI~~KY~~k~f~~~~ 108 (112)
T smart00105 80 LKPPDSDDQQKYESFIAAKYEEKLFVPPE 108 (112)
T ss_pred cCCCCCchHHHHHHHHHHHHHhhhccccc
Confidence 55655556789999999999999998764
No 4
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.3e-36 Score=276.40 Aligned_cols=118 Identities=47% Similarity=0.878 Sum_probs=106.1
Q ss_pred hHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhccccccc
Q 019768 19 GKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSAN 98 (336)
Q Consensus 19 ~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~~~n 98 (336)
.++.+..|...++|+.|||||+++|+|||+|||||||++||||||+||+|||+||||+||+|+++||++|.. |||.+||
T Consensus 7 ~~~~l~~l~~~~~Nk~CaDCga~~P~W~S~nlGvfiCi~CagvHRsLGvhiS~VKSitLD~wt~~~l~~m~~-gGN~~a~ 85 (319)
T COG5347 7 DRKLLKLLKSDSSNKKCADCGAPNPTWASVNLGVFLCIDCAGVHRSLGVHISKVKSLTLDNWTEEELRRMEV-GGNSNAN 85 (319)
T ss_pred HHHHHHHHhhccccCccccCCCCCCceEecccCeEEEeecchhhhccccceeeeeeeecccCCHHHHHHHHH-hcchhhh
Confidence 577788888899999999999999999999999999999999999999999999999999999999999975 8999999
Q ss_pred hhhhhccCCCC-CCCCCCCCHHHHHHHHHhhhccceecCC
Q 019768 99 AIYEAFIPEGV-SKPGPDSSHEIRSKFIRSKYELQEFLKP 137 (336)
Q Consensus 99 ~~~e~~~~~~~-~~p~~~~~~~~r~~fI~~KY~~k~~~~~ 137 (336)
.|||.+.-... .+.....+...+++||+.||+.+.|...
T Consensus 86 ~~~e~~~~~~~~~~~k~~yd~~v~~~y~~~ky~~~~~~~~ 125 (319)
T COG5347 86 RFYEKNLLDQLLLPIKAKYDSSVAKKYIRKKYELKKFIDD 125 (319)
T ss_pred hHhccCCCcccccccccccCHHHHHHHHHHHHHhhhcccc
Confidence 99999865432 2344566677889999999999999875
No 5
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional
Probab=100.00 E-value=5.1e-36 Score=284.65 Aligned_cols=123 Identities=24% Similarity=0.508 Sum_probs=110.8
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHh
Q 019768 12 ELGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEV 91 (336)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ 91 (336)
+++++|+++++|++|++.|+|+.||||++.+|+|||+|||||||+.||||||.|| | |||||+||+|+++||+.|+.
T Consensus 3 SKR~qERnekILreLlklPgNk~CADCgs~~P~WASiNlGIFICi~CSGIHRsLG-h--RVKSLSLDkWT~EEVe~Mk~- 78 (648)
T PLN03119 3 SKREEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREFT-H--RVKSVSMSKFTSKEVEVLQN- 78 (648)
T ss_pred chHHHHHHHHHHHHHhhCcCCCccccCCCCCCCceeeccceEEeccchhhhccCC-c--eeeccccCCCCHHHHHHHHH-
Confidence 4556789999999999999999999999999999999999999999999999998 4 99999999999999999976
Q ss_pred ccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHhhhccceecCCc
Q 019768 92 GGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPS 138 (336)
Q Consensus 92 ggN~~~n~~~e~~~~~~~~~p~~~~~~~~r~~fI~~KY~~k~~~~~~ 138 (336)
|||.+||++||++++....++.+.++.+.+++|||+||++|+|+...
T Consensus 79 gGN~~AN~iyeanw~~~~~~~P~~sD~e~lr~FIR~KYVeKRF~~~~ 125 (648)
T PLN03119 79 GGNQRAREIYLKNWDHQRQRLPENSNAERVREFIKNVYVQKKYAGAN 125 (648)
T ss_pred hchHHHHHHHHhhcccccCCCCCCccHHHHHHHHHHHHhhhhccCcC
Confidence 69999999999999876444444555667789999999999999765
No 6
>PLN03131 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-35 Score=283.98 Aligned_cols=123 Identities=24% Similarity=0.499 Sum_probs=110.6
Q ss_pred CCCCCCChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHh
Q 019768 12 ELGKPSSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEV 91 (336)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ 91 (336)
+++++|+++++|++|++.|+|+.||||++++|+|||+|||||||+.||||||.|| | |||||+||+|+++||+.|+.
T Consensus 3 SkkqqErnekiLreLlk~PgNk~CADCga~~P~WASiNlGIFICi~CSGIHRsLg-h--RVKSVTLD~WtdeEV~~Mk~- 78 (705)
T PLN03131 3 SRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQFVCTNFWTFICMTCSGIHREFT-H--RVKSVSMSKFTSQDVEALQN- 78 (705)
T ss_pred chHHHHHHHHHHHHHhhCcCCCccccCCCCCCCeeEeccceEEchhchhhhcccC-c--ccccccCCCCCHHHHHHHHH-
Confidence 4556788999999999999999999999999999999999999999999999997 4 99999999999999999975
Q ss_pred ccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHhhhccceecCCc
Q 019768 92 GGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPS 138 (336)
Q Consensus 92 ggN~~~n~~~e~~~~~~~~~p~~~~~~~~r~~fI~~KY~~k~~~~~~ 138 (336)
|||.+||++||++++....++.+++..+.++.|||+||++|+|+.+.
T Consensus 79 gGN~~AN~iyeanwd~~r~~lP~~sd~ekrr~FIR~KYVeKRFa~~~ 125 (705)
T PLN03131 79 GGNQRAREIYLKDWDQQRQRLPDNSKVDKIREFIKDIYVDKKYAGGK 125 (705)
T ss_pred hccHHHHHHHHhhcccccCCCCCCccHHHHHHHHHHHHhhhhhhcCC
Confidence 79999999999999876444444556677899999999999999765
No 7
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.97 E-value=1e-31 Score=254.68 Aligned_cols=118 Identities=46% Similarity=0.894 Sum_probs=111.4
Q ss_pred hHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhccccccc
Q 019768 19 GKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSAN 98 (336)
Q Consensus 19 ~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~~~n 98 (336)
..-.|+.|...+||..|+||++++|.|||+|+|+.+|+.|+||||.||+|+|+|||+.||.|..|-+..|..+ ||+.||
T Consensus 500 ea~a~qairn~rgn~~c~dc~~~n~~wAslnlg~l~cieCsgihr~lgt~lSrvr~LeLDdWPvEl~~Vm~ai-GN~~AN 578 (749)
T KOG0705|consen 500 EAMALQAIRNMRGNSHCVDCGTPNPKWASLNLGVLMCIECSGIHRNLGTHLSRVRSLELDDWPVELLKVMSAI-GNDLAN 578 (749)
T ss_pred hHHHHHHHhcCcCCceeeecCCCCcccccccCCeEEEEEchhhhhhhhhhhhhhhccccccCcHHHHHHHHHh-hhhHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999999999988 899999
Q ss_pred hhhhhccCCCCCCCCCCCCHHHHHHHHHhhhccceecCCc
Q 019768 99 AIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPS 138 (336)
Q Consensus 99 ~~~e~~~~~~~~~p~~~~~~~~r~~fI~~KY~~k~~~~~~ 138 (336)
++||... .+..||.++++.+++|+||++||++|.|..|-
T Consensus 579 ~vWE~~~-~G~~KPs~~s~REEkErwIr~KYeqklFLaPl 617 (749)
T KOG0705|consen 579 SVWEGSS-QGQTKPSPDSSREEKERWIRAKYEQKLFLAPL 617 (749)
T ss_pred HHhhhhc-cCCcCCCccccHHHHHHHHHHHHHHHhhcCCC
Confidence 9999844 45589999999999999999999999999885
No 8
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.97 E-value=1.7e-31 Score=240.23 Aligned_cols=87 Identities=41% Similarity=0.830 Sum_probs=79.8
Q ss_pred CChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhccccc
Q 019768 17 SSGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSS 96 (336)
Q Consensus 17 ~~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~~ 96 (336)
.+.++.|+++....+|+.|+||++++|+|||++||||||++|||+||+||+|||+|||||||+|.+.||+.|. .|||.+
T Consensus 4 prtrr~L~~lkp~deNk~CfeC~a~NPQWvSvsyGIfICLECSG~HRgLGVhiSFVRSVTMD~wkeiel~kMe-aGGN~~ 82 (386)
T KOG0704|consen 4 PRTRRVLLELKPQDENKKCFECGAPNPQWVSVSYGIFICLECSGKHRGLGVHISFVRSVTMDKWKEIELKKME-AGGNER 82 (386)
T ss_pred hHHHHHHHhcCccccCCceeecCCCCCCeEeecccEEEEEecCCcccccceeeEEEEeeecccccHHHHHHHH-hccchh
Confidence 3456777777666699999999999999999999999999999999999999999999999999999999995 599999
Q ss_pred cchhhhhc
Q 019768 97 ANAIYEAF 104 (336)
Q Consensus 97 ~n~~~e~~ 104 (336)
++.+++..
T Consensus 83 ~~eFL~s~ 90 (386)
T KOG0704|consen 83 FREFLSSQ 90 (386)
T ss_pred HHHHHhhC
Confidence 99999865
No 9
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional
Probab=99.96 E-value=2.4e-30 Score=234.44 Aligned_cols=116 Identities=36% Similarity=0.606 Sum_probs=96.6
Q ss_pred hHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhccccccc
Q 019768 19 GKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSAN 98 (336)
Q Consensus 19 ~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~~~n 98 (336)
..+.|++|+.+|+|+.|||||+++|+|||+|||||||+.|+|+||+||+|||+|||++||.|++++|+.|. .|||.+||
T Consensus 9 ~~~vfrkL~~kPgNk~CaDCga~nPtWASvn~GIFLCl~CSGVHRsLGvHISfVRSltLD~Ws~eqL~~Mk-~GGN~rA~ 87 (395)
T PLN03114 9 KISVFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSSEQLKMMI-YGGNNRAQ 87 (395)
T ss_pred HHHHHHHHHhCcCCCcCccCCCCCCCceeeccceeehhhhhHhhccCCCCCceeecccCCCCCHHHHHHHH-HhcCHHHH
Confidence 46779999999999999999999999999999999999999999999999999999999999999999996 58999999
Q ss_pred hhhhhccCCCCCCCC--CCCCHHHHHHHHHhhhccceec
Q 019768 99 AIYEAFIPEGVSKPG--PDSSHEIRSKFIRSKYELQEFL 135 (336)
Q Consensus 99 ~~~e~~~~~~~~~p~--~~~~~~~r~~fI~~KY~~k~~~ 135 (336)
.||+.+--.....+. -++....+.+-+.++++.+.+.
T Consensus 88 ~fF~qhG~~~~~~~~~KY~S~aA~~Yre~L~keVa~~~a 126 (395)
T PLN03114 88 VFFKQYGWSDGGKTEAKYTSRAADLYKQILAKEVAKSKA 126 (395)
T ss_pred HHHHHcCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhh
Confidence 999875322111221 2334445555677888877666
No 10
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.96 E-value=1e-29 Score=209.69 Aligned_cols=162 Identities=51% Similarity=0.764 Sum_probs=152.9
Q ss_pred eeEEEEEEEEEEEeeeecccCCC-CCCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCC
Q 019768 175 MVEFIGLLKVKVVKGINLAIRDM-MSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSA 253 (336)
Q Consensus 175 ~~~~~g~L~V~v~~a~~L~~~~~-~~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~ 253 (336)
|..+.|.|.|.|++|.+|..+|+ .++||||++.+++++.+|+++.+++||+|||.|.|.+.+....|+++|||+|.++.
T Consensus 1 m~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~ 80 (168)
T KOG1030|consen 1 MEMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSS 80 (168)
T ss_pred CCccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCc
Confidence 35688999999999999999999 59999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEEeCcccccccccCC-CCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEEE
Q 019768 254 DDIMGEAEIDIQPLLTSALAFG-DPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWM 332 (336)
Q Consensus 254 dd~iG~~~i~l~~l~~~~~~~~-~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~ 332 (336)
||++|.++|+|..++...+... ...++++..+.+|++..++++..++.+.+.+|++.+++.+++++.+.|+++++++|+
T Consensus 81 dD~mG~A~I~l~p~~~~~~~~~l~~~~~~gt~~~~v~~s~dn~~~~es~i~~s~~~~~q~~~l~l~~ve~g~~e~~~~~~ 160 (168)
T KOG1030|consen 81 DDFMGEATIPLKPLLEAQKMDYLKLELLTGTAIGKVLLSRDNCLNEESAIIRSFGKIVQDYILRLQNVECGELEIQLEWI 160 (168)
T ss_pred ccccceeeeccHHHHHHhhhhccccccCCCcEeeEEEeccccccccceEEEecCChhhhhhccchhhcCcceeeeeeeEe
Confidence 9999999999999998766664 457888999999999999999999999999999999999999999999999999999
Q ss_pred eCCC
Q 019768 333 PLDQ 336 (336)
Q Consensus 333 ~~~~ 336 (336)
+.++
T Consensus 161 ~~~~ 164 (168)
T KOG1030|consen 161 KLPG 164 (168)
T ss_pred cCcc
Confidence 9875
No 11
>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=99.96 E-value=2.9e-30 Score=239.73 Aligned_cols=87 Identities=41% Similarity=0.830 Sum_probs=82.8
Q ss_pred ChHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhcccccc
Q 019768 18 SGKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSA 97 (336)
Q Consensus 18 ~~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~~~ 97 (336)
..+..++.|..+++|+.||||||++|+|+|++||||||+.||++||.||+|||+|||..||+|+.+|++.|+ +|||.+|
T Consensus 9 d~~~vfkkLRs~~~NKvCFDCgAknPtWaSVTYGIFLCiDCSAvHRnLGVHiSFVRSTnLDsWs~~qLR~M~-~GGN~nA 87 (454)
T KOG0706|consen 9 DIQTVFKKLRSQSENKVCFDCGAKNPTWASVTYGIFLCIDCSAVHRNLGVHISFVRSTNLDSWSWEQLRRMQ-VGGNANA 87 (454)
T ss_pred hHHHHHHHHhcCCCCceecccCCCCCCceeecceEEEEEecchhhhccccceEEEeecccccCCHHHHhHhh-hcCchhH
Confidence 367889999999999999999999999999999999999999999999999999999999999999999995 7999999
Q ss_pred chhhhhcc
Q 019768 98 NAIYEAFI 105 (336)
Q Consensus 98 n~~~e~~~ 105 (336)
+.++.++-
T Consensus 88 ~~FFkqhg 95 (454)
T KOG0706|consen 88 RVFFKQHG 95 (454)
T ss_pred HHHHHHcC
Confidence 99998763
No 12
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.94 E-value=1.1e-25 Score=187.09 Aligned_cols=145 Identities=59% Similarity=0.870 Sum_probs=134.4
Q ss_pred EEEEEEEEEeeeecccCCCCCCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCeeE
Q 019768 179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMG 258 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~iG 258 (336)
.|.|+|+|++|++|+..+...+||||++.++++.++|++++++.||+|||.|.|.+......|.|+|||++.++.|++||
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG 80 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG 80 (145)
T ss_pred CeEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence 38899999999999988777889999999999999999999999999999999999887788999999999999999999
Q ss_pred EEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccc
Q 019768 259 EAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESG 323 (336)
Q Consensus 259 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G 323 (336)
.+.+++.++...........+.++..+.+|+|..++++.+++.+.+.+||+.+++.|+|+++++|
T Consensus 81 ~a~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~g 145 (145)
T cd04038 81 EAEIDLEPLVEAAKLDHLRDTPGGTQIKKVLPSVENCLASESHITWKDGKIVQDLVLKLRNVESG 145 (145)
T ss_pred EEEEEHHHhhhhhhhhccccCCCCEEEEEEecCCCceEeccceEEEECCEEEEEEEEEecccccC
Confidence 99999999987766554456788999999999999999999999999999999999999999887
No 13
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=99.91 E-value=2.4e-25 Score=226.96 Aligned_cols=117 Identities=43% Similarity=0.793 Sum_probs=108.7
Q ss_pred HHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhccccccchhh
Q 019768 22 RLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIY 101 (336)
Q Consensus 22 ~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~~~n~~~ 101 (336)
.+..+...|+|..|+|||++.|+|+|+|+||.+||.|+|+||+||+|+|||+|++||.|.++.+..|..+ ||..+|.+|
T Consensus 416 ~~~~vq~~pgN~~c~Dcg~p~ptw~S~NLgv~~CIecSGvhRslGvh~SkvrsLtLD~~~~~l~~l~~~l-gn~~~N~i~ 494 (785)
T KOG0521|consen 416 VIEEVQSVPGNAQCCDCGAPEPTWASINLGVLLCIECSGVHRSLGVHISKVRSLTLDVWEPELLLLFKNL-GNKYVNEIY 494 (785)
T ss_pred hhhhhhcCCchhhhhhcCCCCCchHhhhhchhhHhhccccccccCchhhhhhhhhhhccCcHHHHHHHHh-Ccchhhhhh
Confidence 4778888999999999999999999999999999999999999999999999999999999999999876 899999999
Q ss_pred hhccCCC-CCCCCCCCCHHHHHHHHHhhhccceecCCcc
Q 019768 102 EAFIPEG-VSKPGPDSSHEIRSKFIRSKYELQEFLKPSL 139 (336)
Q Consensus 102 e~~~~~~-~~~p~~~~~~~~r~~fI~~KY~~k~~~~~~~ 139 (336)
|+.+++. ..+|.+.++...|+.||++||+++.|.....
T Consensus 495 e~~l~~~~~~~~~~~~~~~~r~~~i~~kyve~~F~~k~~ 533 (785)
T KOG0521|consen 495 EALLPSYDSSKPTASSSRQAREAWIKAKYVERRFSVKEP 533 (785)
T ss_pred hcccccccccCCCCccchhhhhHhhhcccceeeEeeccc
Confidence 9999864 6788888888899999999999999986543
No 14
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.89 E-value=2e-22 Score=162.37 Aligned_cols=118 Identities=21% Similarity=0.465 Sum_probs=99.9
Q ss_pred EEEEEEEEeeeecccCCCCCCCcEEEEEECCeEEEeeeeCC-CCCceeeceeeecccCCCCceEEEEEecCCCCCCCeeE
Q 019768 180 GLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKS-NLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMG 258 (336)
Q Consensus 180 g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~~~rT~~~~~-t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~iG 258 (336)
|.|.|+|++|++|+..+.+++||||++.+++++++|+++.+ +.||+|||+|.|.+......|.|+|||++.+++|++||
T Consensus 2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG 81 (121)
T cd04016 2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIA 81 (121)
T ss_pred cEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEE
Confidence 78999999999998877559999999999999999999876 89999999999999775578999999999999999999
Q ss_pred EEEEeCcc-cccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEE
Q 019768 259 EAEIDIQP-LLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW 331 (336)
Q Consensus 259 ~~~i~l~~-l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~ 331 (336)
.+.++|.. +. .+...+.||+|.... .....|+|+|+|.|
T Consensus 82 ~~~i~l~~~~~------------~g~~~~~W~~L~~~~----------------------~~~~~g~i~l~l~y 121 (121)
T cd04016 82 WTHITIPESVF------------NGETLDDWYSLSGKQ----------------------GEDKEGMINLVFSY 121 (121)
T ss_pred EEEEECchhcc------------CCCCccccEeCcCcc----------------------CCCCceEEEEEEeC
Confidence 99999964 43 234478899864411 11367999999987
No 15
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=99.86 E-value=1e-22 Score=190.82 Aligned_cols=111 Identities=38% Similarity=0.795 Sum_probs=97.3
Q ss_pred CCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhccccccchhhhhccCC-
Q 019768 29 QRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPE- 107 (336)
Q Consensus 29 ~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~~~n~~~e~~~~~- 107 (336)
...-+.|+|||+++|.|||+|-|+|+|..|..+||+||.|||.||++.-..|.++.+++...+ .|..||.+||+.+-+
T Consensus 5 ~l~~evC~DC~~~dp~WASvnrGt~lC~eCcsvHrsLGrhIS~vrhLR~s~W~pt~l~~V~tL-n~~gaNsIWEh~Lld~ 83 (669)
T KOG0818|consen 5 LLSSEVCADCSGPDPSWASVNRGTFLCDECCSVHRSLGRHISQVRHLRHTPWPPTLLQMVETL-NNNGANSIWEHSLLDP 83 (669)
T ss_pred chhhhhhcccCCCCCcceeecCceEehHhhhHHHhhhcchHHHHHHhccCCCCHHHHHHHHHH-HhcCcchhhhhhccCc
Confidence 456689999999999999999999999999999999999999999999999999999977665 788999999998743
Q ss_pred -----CCCCCCCCCC-HHHHHHHHHhhhccceecC-Cccc
Q 019768 108 -----GVSKPGPDSS-HEIRSKFIRSKYELQEFLK-PSLR 140 (336)
Q Consensus 108 -----~~~~p~~~~~-~~~r~~fI~~KY~~k~~~~-~~~~ 140 (336)
+++||.|.+. +..+++||++||+.-.|+. ++.+
T Consensus 84 st~~sg~rk~~pqD~~Hp~K~eFIkaKy~~LtFv~~~~~r 123 (669)
T KOG0818|consen 84 ATIMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCR 123 (669)
T ss_pred hhhhcccCCCCCcCCCCccHHHHHHHHHHheeeeccCCCC
Confidence 4678988554 5589999999999999986 4433
No 16
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=99.85 E-value=7.9e-22 Score=194.44 Aligned_cols=123 Identities=38% Similarity=0.684 Sum_probs=110.7
Q ss_pred HHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCC--CCHHHHHHHHHhccccccc
Q 019768 21 GRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDD--WSDDEVDAMIEVGGNSSAN 98 (336)
Q Consensus 21 ~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~--~~~~~~~~~~~~ggN~~~n 98 (336)
+.-.++.....|+.|||||++.|.|||+|+++.||-.|+|-||+||.-+|+|+|++||. |+.+-++++..+ ||.++|
T Consensus 287 evaeriW~ne~nr~cadC~ssrPdwasiNL~vvIck~caGqhrslgs~dSkvrslkmd~svwsneliElfivl-gn~~an 365 (1186)
T KOG1117|consen 287 EVAERIWLNEENRECADCGSSRPDWASINLCVVICKPCAGQHRSLGSGDSKVRSLKMDPSVWSNELIELFIVL-GNPRAN 365 (1186)
T ss_pred HHHHHHHhccccccccccCCCCCcccccccceEEcccCCCccccCCCccccccccccCcccccchhhhhheee-cCcccc
Confidence 34456778899999999999999999999999999999999999999999999999996 999999999877 899999
Q ss_pred hhhhhccCCCCCCCCCCCCHHHHHHHHHhhhccceecCCcccccCCC
Q 019768 99 AIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKPSLRIASGK 145 (336)
Q Consensus 99 ~~~e~~~~~~~~~p~~~~~~~~r~~fI~~KY~~k~~~~~~~~~~s~~ 145 (336)
++|.+++|++ ..-.++++...|++||.+||....|..+.+.....+
T Consensus 366 ~Fwa~nl~~~-e~lh~dssp~~r~~fi~~Kykeg~fRk~~~~~~~~s 411 (1186)
T KOG1117|consen 366 RFWAGNLPPN-EHLHPDSSPSTRRQFIKEKYKEGKFRKEHPVEICSS 411 (1186)
T ss_pred cccccCCCCc-cccCCCCCcchhhhHHHHHhhccccccccccccccc
Confidence 9999999987 567889999999999999999999987765444433
No 17
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.85 E-value=1.1e-20 Score=153.88 Aligned_cols=102 Identities=23% Similarity=0.518 Sum_probs=88.7
Q ss_pred EEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccC------CCCceEEEEEecCCCCCC
Q 019768 182 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ------EYGPVKLEVFDHDTFSAD 254 (336)
Q Consensus 182 L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~------~~~~L~v~V~d~~~~~~d 254 (336)
|+|+|++|++|+..+.. .+||||++.+++.+++|+++++++||+|||.|.|.+.. ....|.|+|||++.+++|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 57999999999988876 89999999999999999999999999999999999866 356799999999999899
Q ss_pred CeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768 255 DIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 255 d~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~ 293 (336)
++||++.++|.++... .+.....||+|.+
T Consensus 81 ~~iG~~~i~l~~l~~~----------~~~~~~~W~~L~~ 109 (126)
T cd08682 81 KFLGQVSIPLNDLDED----------KGRRRTRWFKLES 109 (126)
T ss_pred ceeEEEEEEHHHhhcc----------CCCcccEEEECcC
Confidence 9999999999998521 2334678998754
No 18
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.84 E-value=1.6e-20 Score=150.88 Aligned_cols=115 Identities=33% Similarity=0.568 Sum_probs=96.8
Q ss_pred EEEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCC-CCCceeeceeeecccC-CCCceEEEEEecCCCCCCCe
Q 019768 180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKS-NLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDI 256 (336)
Q Consensus 180 g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~-t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~~~dd~ 256 (336)
|.|+|+|++|++|+..+.. .+||||++.+++..++|+++.+ ++||.|||.|.|.+.. ....|.|+|||++..+ |++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence 6899999999999998876 8999999999998899998865 7999999999999976 4567999999999875 899
Q ss_pred eEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEE
Q 019768 257 MGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW 331 (336)
Q Consensus 257 iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~ 331 (336)
||++.+++.++..+ .....||+|.. .+..+|+|+|+|+|
T Consensus 80 iG~~~~~l~~~~~~------------~~~~~w~~L~~------------------------~~~~~G~i~l~l~f 118 (118)
T cd08681 80 IGDTEVDLSPALKE------------GEFDDWYELTL------------------------KGRYAGEVYLELTF 118 (118)
T ss_pred eEEEEEecHHHhhc------------CCCCCcEEecc------------------------CCcEeeEEEEEEEC
Confidence 99999999998542 23467987432 33467999999986
No 19
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.83 E-value=6.5e-20 Score=148.70 Aligned_cols=101 Identities=25% Similarity=0.377 Sum_probs=89.3
Q ss_pred EEEEEEEeeee---cccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCC----
Q 019768 181 LLKVKVVKGIN---LAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFS---- 252 (336)
Q Consensus 181 ~L~V~v~~a~~---L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~---- 252 (336)
+|+|+|++|++ |...+.. .+||||++.+++++.||+++++++||+|||+|.|.+......|.|+|||++.++
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~ 80 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA 80 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence 48999999999 7887876 899999999999999999999999999999999999776678999999999874
Q ss_pred --CCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768 253 --ADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 253 --~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~ 293 (336)
+|++||++.++|..+. .+.....||+|.+
T Consensus 81 ~~~dd~lG~~~i~l~~l~------------~~~~~~~~~~L~~ 111 (126)
T cd08379 81 VQPDVLIGKVRIRLSTLE------------DDRVYAHSYPLLS 111 (126)
T ss_pred CCCCceEEEEEEEHHHcc------------CCCEEeeEEEeEe
Confidence 8999999999999984 3446788998654
No 20
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.83 E-value=9.7e-20 Score=148.31 Aligned_cols=124 Identities=31% Similarity=0.575 Sum_probs=102.9
Q ss_pred EEEEEEEEeeeecccCCC--C-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCCCCCCC
Q 019768 180 GLLKVKVVKGINLAIRDM--M-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADD 255 (336)
Q Consensus 180 g~L~V~v~~a~~L~~~~~--~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~~~dd 255 (336)
|.|+|+|++|++|+..+. . .+||||++.++...++|++++++.||.|||.|.|.+.. ....|.|+|||++.++.++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 689999999999998886 5 88999999999999999999999999999999999976 5678999999999988999
Q ss_pred eeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEE
Q 019768 256 IMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW 331 (336)
Q Consensus 256 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~ 331 (336)
+||.+.++|.++.... .......||+|.+.... .....+|+|+|++.|
T Consensus 81 ~lG~~~i~l~~~~~~~---------~~~~~~~w~~L~~~~~~-------------------~~~~~~G~i~l~~~~ 128 (128)
T cd04024 81 YLGEFDIALEEVFADG---------KTGQSDKWITLKSTRPG-------------------KTSVVSGEIHLQFSW 128 (128)
T ss_pred cceEEEEEHHHhhccc---------ccCccceeEEccCcccC-------------------ccccccceEEEEEEC
Confidence 9999999999986321 12235689986552100 123468999999988
No 21
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.83 E-value=1.5e-19 Score=144.85 Aligned_cols=88 Identities=34% Similarity=0.588 Sum_probs=81.3
Q ss_pred EEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCC-CCceEEEEEecCCCCCCCeeE
Q 019768 181 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQE-YGPVKLEVFDHDTFSADDIMG 258 (336)
Q Consensus 181 ~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~-~~~L~v~V~d~~~~~~dd~iG 258 (336)
+|+|.|++|++|+..+.. .+||||++++++...+|++++++.||.|||.|.|.+... ...|.|+|||++.+++|++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 478999999999998876 889999999999999999999999999999999998763 678999999999999999999
Q ss_pred EEEEeCcccc
Q 019768 259 EAEIDIQPLL 268 (336)
Q Consensus 259 ~~~i~l~~l~ 268 (336)
.+.++|.++.
T Consensus 81 ~~~~~l~~l~ 90 (116)
T cd08376 81 RCEIDLSALP 90 (116)
T ss_pred EEEEeHHHCC
Confidence 9999999874
No 22
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.82 E-value=1.7e-19 Score=148.74 Aligned_cols=95 Identities=36% Similarity=0.580 Sum_probs=86.3
Q ss_pred eeEEEEEEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCCCC
Q 019768 175 MVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFS 252 (336)
Q Consensus 175 ~~~~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~~ 252 (336)
.....|.|+|+|++|++|+..+.. .+||||++.++.+.++|++++++.||.|||.|.|.+.. ....|.|+|||++.++
T Consensus 10 ~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~ 89 (136)
T cd08375 10 RASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFS 89 (136)
T ss_pred CCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCC
Confidence 344679999999999999998776 89999999999999999999999999999999999876 4467999999999999
Q ss_pred CCCeeEEEEEeCccccc
Q 019768 253 ADDIMGEAEIDIQPLLT 269 (336)
Q Consensus 253 ~dd~iG~~~i~l~~l~~ 269 (336)
+|++||++.++|.++..
T Consensus 90 ~d~~lG~~~i~l~~l~~ 106 (136)
T cd08375 90 PDDFLGRTEIRVADILK 106 (136)
T ss_pred CCCeeEEEEEEHHHhcc
Confidence 99999999999999864
No 23
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.82 E-value=2e-19 Score=145.36 Aligned_cols=119 Identities=34% Similarity=0.533 Sum_probs=99.5
Q ss_pred EEEEEEEeeeecccCCCC-CCCcEEEEEECC-eEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCeeE
Q 019768 181 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMG 258 (336)
Q Consensus 181 ~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~iG 258 (336)
.|+|+|++|++|+..+.. .+||||++.+++ ..++|+++.++.||.|||.|.|.+......|.|+|||++.+++|++||
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG 80 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG 80 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence 379999999999998876 899999999977 578999999999999999999998765678999999999999999999
Q ss_pred EEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEEEe
Q 019768 259 EAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMP 333 (336)
Q Consensus 259 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~ 333 (336)
.+.+++.++.. +...+.|++|.+.. .....|+|+|.++|.|
T Consensus 81 ~~~~~l~~l~~------------~~~~~~~~~L~~~~----------------------~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 81 SAFVDLSTLEL------------NKPTEVKLKLEDPN----------------------SDEDLGYISLVVTLTP 121 (121)
T ss_pred EEEEEHHHcCC------------CCCeEEEEECCCCC----------------------CccCceEEEEEEEECC
Confidence 99999999853 23455677754310 1245799999999876
No 24
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.82 E-value=1e-19 Score=146.59 Aligned_cols=113 Identities=38% Similarity=0.715 Sum_probs=97.3
Q ss_pred EEEEEEEEeeeecccCCC-------CCCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCCC
Q 019768 180 GLLKVKVVKGINLAIRDM-------MSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTF 251 (336)
Q Consensus 180 g~L~V~v~~a~~L~~~~~-------~~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~ 251 (336)
|.|+|+|++|++|+..+. +.+||||++.+++..++|++++++.||.|+|.|.|.+.. ....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 679999999999998764 268999999999999999999999999999999999865 567899999999988
Q ss_pred CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEE
Q 019768 252 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW 331 (336)
Q Consensus 252 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~ 331 (336)
++++||.+.+++.++... ...+.||+| .....|+|+|+++|
T Consensus 81 -~~~~iG~~~i~l~~l~~~------------~~~~~w~~L--------------------------~~~~~G~~~~~~~~ 121 (121)
T cd08391 81 -KDDFLGRLSIDLGSVEKK------------GFIDEWLPL--------------------------EDVKSGRLHLKLEW 121 (121)
T ss_pred -CCCcEEEEEEEHHHhccc------------CccceEEEC--------------------------cCCCCceEEEEEeC
Confidence 899999999999998532 235678873 44578999999987
No 25
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.81 E-value=4e-19 Score=148.78 Aligned_cols=105 Identities=26% Similarity=0.375 Sum_probs=90.1
Q ss_pred EEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCC-CCCceeeceeeecccC-CCCceEEEEEecCCCCCCCee
Q 019768 181 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKS-NLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDIM 257 (336)
Q Consensus 181 ~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~-t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~~~dd~i 257 (336)
.|+|+|++|++|+..+.. .+||||++.++++.++|+++.+ ++||+|||.|.|.+.. ....|.|+|||++.++++++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 389999999999998887 8999999999999999999977 6999999999999865 346899999999998899999
Q ss_pred EEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768 258 GEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 258 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~ 293 (336)
|++.++|.++..+. ..+...++||+|.+
T Consensus 81 G~v~i~L~~l~~~~--------~~~~~~~~W~~L~~ 108 (150)
T cd04019 81 GRAVIPLNDIERRV--------DDRPVPSRWFSLER 108 (150)
T ss_pred EEEEEEHHHCcccC--------CCCccCCceEECcC
Confidence 99999999985321 12345789999765
No 26
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.81 E-value=3.3e-19 Score=144.07 Aligned_cols=99 Identities=23% Similarity=0.471 Sum_probs=85.6
Q ss_pred EEEEEEeeeecccCCC-C-CCCcEEEEEECCe-EEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCeeE
Q 019768 182 LKVKVVKGINLAIRDM-M-SSDPYVVLRLGQQ-TVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMG 258 (336)
Q Consensus 182 L~V~v~~a~~L~~~~~-~-~~dPyv~i~l~~~-~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~iG 258 (336)
|.|+|++|+||+..+. . .+||||.+.++++ ..+|+++++|+||+|||+|.|.+......|.|.|||++.+++|++||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG 81 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG 81 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence 7899999999998743 2 7899999999765 57999999999999999999999876678999999999999999999
Q ss_pred EEEEeCcccccccccCCCCCccCceeeceeeecC
Q 019768 259 EAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSD 292 (336)
Q Consensus 259 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~ 292 (336)
.+.++++++.. +...+.||+|.
T Consensus 82 ~~~i~l~~l~~------------~~~~~~w~~L~ 103 (121)
T cd08401 82 KVAIKKEDLHK------------YYGKDTWFPLQ 103 (121)
T ss_pred EEEEEHHHccC------------CCCcEeeEEEE
Confidence 99999999853 23467899854
No 27
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.81 E-value=5.4e-19 Score=143.83 Aligned_cols=121 Identities=24% Similarity=0.365 Sum_probs=98.5
Q ss_pred EEEEEEeeeecccCCCCCCCcEEEEEECC--eEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCeeEE
Q 019768 182 LKVKVVKGINLAIRDMMSSDPYVVLRLGQ--QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGE 259 (336)
Q Consensus 182 L~V~v~~a~~L~~~~~~~~dPyv~i~l~~--~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~iG~ 259 (336)
|.|+|++|++|+. ..+.+||||+++++. ++++|+++.++.||.|||.|.|.+......|.|+|||++..++|++||+
T Consensus 1 l~v~v~~A~~L~~-~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~ 79 (126)
T cd08678 1 LLVKNIKANGLSE-AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGL 79 (126)
T ss_pred CEEEEEEecCCCC-CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEE
Confidence 6799999999988 444899999999973 5689999999999999999999997666789999999999989999999
Q ss_pred EEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEEEeCC
Q 019768 260 AEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPLD 335 (336)
Q Consensus 260 ~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~~~ 335 (336)
+.+++.++... .....||+|..+.. ......|+|++++.|.+..
T Consensus 80 ~~i~l~~l~~~------------~~~~~~~~L~~~~~--------------------~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 80 AIVPFDELRKN------------PSGRQIFPLQGRPY--------------------EGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred EEEeHHHhccC------------CceeEEEEecCCCC--------------------CCCCcceEEEEEEEEeccc
Confidence 99999998632 22356887643110 0134689999999998753
No 28
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.81 E-value=4.1e-19 Score=144.73 Aligned_cols=120 Identities=24% Similarity=0.342 Sum_probs=97.8
Q ss_pred EEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCC----CCceEEEEEecCCCC-CC
Q 019768 181 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQE----YGPVKLEVFDHDTFS-AD 254 (336)
Q Consensus 181 ~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~----~~~L~v~V~d~~~~~-~d 254 (336)
.|+|+|++|++|+..+.. .+||||++.+++++++|+++.++.||.|||.|.|.+... ...|.|+|||++.++ .+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 389999999999988875 899999999999999999999999999999999998752 357999999999886 89
Q ss_pred CeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEEE
Q 019768 255 DIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWM 332 (336)
Q Consensus 255 d~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~ 332 (336)
++||++.+++.++.. .+.....||+|.... .....+|+|+|++.+.
T Consensus 81 ~~lG~v~i~l~~l~~-----------~~~~~~~w~~L~~~~---------------------~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 81 SFLGRVRISGTSFVP-----------PSEAVVQRYPLEKRG---------------------LFSRVRGEIGLKVYIT 126 (127)
T ss_pred CeeeEEEEcHHHcCC-----------CCCccceEeEeeeCC---------------------CCCCccEEEEEEEEEc
Confidence 999999999999852 234467899854311 1223578888888763
No 29
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.80 E-value=4.3e-19 Score=143.61 Aligned_cols=120 Identities=31% Similarity=0.541 Sum_probs=98.5
Q ss_pred EEEEEEEEEeeeecccCCCC--CCCcEEEEEECC--eEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCC
Q 019768 179 IGLLKVKVVKGINLAIRDMM--SSDPYVVLRLGQ--QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSAD 254 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~--~~dPyv~i~l~~--~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~d 254 (336)
+|.|+|+|++|++|+..+.. .+||||++.++. ..++|+++.++.||.|||.|.|.+......|.|+|||++..+.|
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d 80 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKD 80 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCC
Confidence 48899999999999965533 689999999977 78899999999999999999999886678899999999998899
Q ss_pred CeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEEEe
Q 019768 255 DIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMP 333 (336)
Q Consensus 255 d~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~ 333 (336)
++||.+.++|.++..... ...|+. .+...++..|+|+++++|+|
T Consensus 81 ~~iG~~~~~l~~l~~~~~------------~~~~~~-----------------------~~~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 81 KLIGTAEFDLSSLLQNPE------------QENLTK-----------------------NLLRNGKPVGELNYDLRFFP 124 (124)
T ss_pred ceeEEEEEEHHHhccCcc------------ccCcch-----------------------hhhcCCccceEEEEEEEeCC
Confidence 999999999999864321 111110 12235567899999999987
No 30
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.80 E-value=8.8e-19 Score=140.90 Aligned_cols=118 Identities=28% Similarity=0.520 Sum_probs=99.2
Q ss_pred EEEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCeeE
Q 019768 180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMG 258 (336)
Q Consensus 180 g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~iG 258 (336)
|.|.|+|++|++|+..+.. .+||||+++++...++|++++++.||.|+|+|.|.+......|.|+|||++..+++++||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG 80 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence 6899999999999998876 899999999999889999999999999999999998765678999999999988999999
Q ss_pred EEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEEE
Q 019768 259 EAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWM 332 (336)
Q Consensus 259 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~ 332 (336)
++.+++.++..+ ...||+|.+.. ......|+|.|+++++
T Consensus 81 ~~~~~l~~~~~~--------------~~~~~~l~~~~---------------------~~~~~~G~i~l~~~~~ 119 (119)
T cd08377 81 KVAIPLLSIKNG--------------ERKWYALKDKK---------------------LRTRAKGSILLEMDVI 119 (119)
T ss_pred EEEEEHHHCCCC--------------CceEEECcccC---------------------CCCceeeEEEEEEEeC
Confidence 999999887422 24698764411 1223578898888763
No 31
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.79 E-value=7.9e-19 Score=144.07 Aligned_cols=125 Identities=33% Similarity=0.523 Sum_probs=99.9
Q ss_pred EEEEEEEeeeecccCCCC-CCCcEEEEEECCe-------EEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCC
Q 019768 181 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQ-------TVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFS 252 (336)
Q Consensus 181 ~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~-------~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~ 252 (336)
.|+|+|++|++|+..+.. .+||||++++.+. .++|++++++.||.|||+|.|.+......|.|+|||++.++
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~ 80 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT 80 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 389999999999998876 8999999999654 57999999999999999999998775678999999999999
Q ss_pred CCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEEE
Q 019768 253 ADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWM 332 (336)
Q Consensus 253 ~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~ 332 (336)
++++||++.+++.++....... .......||+|.... -.+...|+|+|++.|+
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~------~~~~~~~~~~l~~~~---------------------~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTETPGN------ERRYTFKDYLLRPRS---------------------SKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCeeEEEEEEHHHCCCcCccc------cccccchheeeeecC---------------------CCCcceeEEEEEEeeC
Confidence 9999999999999987542110 012456798753300 1234689999999884
No 32
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.79 E-value=1e-18 Score=140.49 Aligned_cols=105 Identities=20% Similarity=0.274 Sum_probs=86.7
Q ss_pred EEEEEEEeeeecccCCCCCCCcEEEEEE-C----C--eEEEeeeeCCCCCceeeceeeecccCC----CCceEEEEEecC
Q 019768 181 LLKVKVVKGINLAIRDMMSSDPYVVLRL-G----Q--QTVQTTIVKSNLNPVWNEELMLSVPQE----YGPVKLEVFDHD 249 (336)
Q Consensus 181 ~L~V~v~~a~~L~~~~~~~~dPyv~i~l-~----~--~~~rT~~~~~t~nP~W~e~f~f~v~~~----~~~L~v~V~d~~ 249 (336)
.|+|+|++|++|+..+.+.+||||++++ + . ++++|+++.+++||+|||+|.|.+... ...|.|.|||++
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 3899999999999887668899999998 3 2 356899999999999999999999742 245899999999
Q ss_pred CCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccc
Q 019768 250 TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALL 297 (336)
Q Consensus 250 ~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~ 297 (336)
..+++++||++.++|.++..+ .....|++|......
T Consensus 81 ~~~~dd~IG~~~l~l~~~~~~------------~~~~~w~~L~~~~~~ 116 (120)
T cd08395 81 FARDDRLVGVTVLQLRDIAQA------------GSCACWLPLGRRIHM 116 (120)
T ss_pred ccCCCCEEEEEEEEHHHCcCC------------CcEEEEEECcCcccc
Confidence 888899999999999998532 346779987664433
No 33
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.79 E-value=9.5e-19 Score=141.38 Aligned_cols=101 Identities=28% Similarity=0.461 Sum_probs=86.1
Q ss_pred EEEEEEeeeecccCCCCCCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCCCCCCCeeEEE
Q 019768 182 LKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDIMGEA 260 (336)
Q Consensus 182 L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~~~dd~iG~~ 260 (336)
|+|+|++|++|+.. .+||||++.+++...+|++++++.||+|||+|.|.+.. ....|.|+|||++.+ .+++||++
T Consensus 2 L~V~Vi~a~~L~~~---~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~~ 77 (121)
T cd08378 2 LYVRVVKARGLPAN---SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGGV 77 (121)
T ss_pred EEEEEEEecCCCcc---cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeeeE
Confidence 78999999999888 67999999999999999999999999999999999876 457799999999987 88999999
Q ss_pred EEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768 261 EIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 261 ~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~ 293 (336)
.++|.++..... .......+||+|.+
T Consensus 78 ~i~l~~l~~~~~-------~~~~~~~~W~~L~~ 103 (121)
T cd08378 78 CFDLSEVPTRVP-------PDSPLAPQWYRLED 103 (121)
T ss_pred EEEhHhCcCCCC-------CCCCCCcceEEccC
Confidence 999999854211 12234678998755
No 34
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.79 E-value=7.7e-19 Score=142.14 Aligned_cols=101 Identities=28% Similarity=0.435 Sum_probs=86.4
Q ss_pred EEEEEEEEEeeeecccCCCCCCCcEEEEEEC-----CeEEEeeeeCCCCCceeeceeeecc-cC---CCCceEEEEEecC
Q 019768 179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSV-PQ---EYGPVKLEVFDHD 249 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~-----~~~~rT~~~~~t~nP~W~e~f~f~v-~~---~~~~L~v~V~d~~ 249 (336)
.+.|.|.|++|++|+..+...+||||++++. ..+++|++++++.||+|||+|.|.+ +. ....|.|+|||++
T Consensus 12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d 91 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD 91 (122)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence 5889999999999999983389999999995 3468999999999999999999987 32 4567999999999
Q ss_pred CCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeec
Q 019768 250 TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS 291 (336)
Q Consensus 250 ~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l 291 (336)
.++++++||++.++|.++.. ......||+|
T Consensus 92 ~~~~~~~lG~~~i~l~~l~~------------~~~~~~W~~L 121 (122)
T cd08381 92 SLVENEFLGGVCIPLKKLDL------------SQETEKWYPL 121 (122)
T ss_pred CCcCCcEEEEEEEecccccc------------CCCccceEEC
Confidence 99999999999999999853 2335779875
No 35
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.78 E-value=1.6e-18 Score=139.51 Aligned_cols=86 Identities=31% Similarity=0.561 Sum_probs=76.8
Q ss_pred EEEEEEeeeecccCCCC-CCCcEEEEEEC---CeEEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCCCCCCCe
Q 019768 182 LKVKVVKGINLAIRDMM-SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDI 256 (336)
Q Consensus 182 L~V~v~~a~~L~~~~~~-~~dPyv~i~l~---~~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~~~dd~ 256 (336)
|+|+|++|++|+..+.. .+||||++.++ ...++|++++++.||+|||+|.|.+.. ....|.|+|||++.+ +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 78999999999988865 89999999985 356899999999999999999999865 345699999999998 8999
Q ss_pred eEEEEEeCcccc
Q 019768 257 MGEAEIDIQPLL 268 (336)
Q Consensus 257 iG~~~i~l~~l~ 268 (336)
||++.+++.++.
T Consensus 81 iG~~~~~l~~l~ 92 (119)
T cd04036 81 LGTVLFDVSKLK 92 (119)
T ss_pred cEEEEEEHHHCC
Confidence 999999999885
No 36
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.78 E-value=3.2e-18 Score=138.57 Aligned_cols=101 Identities=31% Similarity=0.509 Sum_probs=88.4
Q ss_pred EEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCC-CCceEEEEEecCCCCCCCeeE
Q 019768 181 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQE-YGPVKLEVFDHDTFSADDIMG 258 (336)
Q Consensus 181 ~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~-~~~L~v~V~d~~~~~~dd~iG 258 (336)
.|+|+|++|++|...+.. .+||||++++++..++|++++++.||+|||+|.|.+... ...|.|+|||++.++.+++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 389999999999998876 889999999999999999999999999999999998763 467999999999999999999
Q ss_pred EEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768 259 EAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 259 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~ 293 (336)
.+.++|.++... .....||.|..
T Consensus 81 ~~~~~l~~l~~~------------~~~~~w~~L~~ 103 (123)
T cd04025 81 KVVFSIQTLQQA------------KQEEGWFRLLP 103 (123)
T ss_pred EEEEEHHHcccC------------CCCCCEEECCC
Confidence 999999988532 23467998654
No 37
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.78 E-value=5.6e-18 Score=137.85 Aligned_cols=120 Identities=19% Similarity=0.412 Sum_probs=95.8
Q ss_pred EEEEEEEEEeeeecccCCCCCCCcEEEEEECCeE-EEeeeeCCCCCceeeceeeecccCC-CCceEEEEEecCCCCCCCe
Q 019768 179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQE-YGPVKLEVFDHDTFSADDI 256 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~~-~rT~~~~~t~nP~W~e~f~f~v~~~-~~~L~v~V~d~~~~~~dd~ 256 (336)
...|+|.|++|++|+..+ .+||||++.+++.. .+|++ +++.||.|||.|.|.+... ...+.|.|||++.+++|++
T Consensus 3 ~~~L~V~Vi~A~~L~~~~--~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~ 79 (126)
T cd08400 3 VRSLQLNVLEAHKLPVKH--VPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSE 79 (126)
T ss_pred eeEEEEEEEEeeCCCCCC--CCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCe
Confidence 456999999999998864 57999999998754 68887 4689999999999986543 3578999999999999999
Q ss_pred eEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEEEe
Q 019768 257 MGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMP 333 (336)
Q Consensus 257 iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~ 333 (336)
||.+.++|..+.. +...+.||+|..... -.....|+|+|++.|.+
T Consensus 80 iG~v~i~l~~l~~------------~~~~~~W~~L~~~~~--------------------~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 80 IAEVTVQLSKLQN------------GQETDEWYPLSSASP--------------------LKGGEWGSLRIRARYSH 124 (126)
T ss_pred EEEEEEEHhHccC------------CCcccEeEEcccCCC--------------------CCCCcCcEEEEEEEEEc
Confidence 9999999998753 345678998644110 12346799999999975
No 38
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.78 E-value=1.7e-18 Score=136.96 Aligned_cols=94 Identities=28% Similarity=0.495 Sum_probs=83.3
Q ss_pred EEEEEEEEeeeecccCCCC-----CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccC--CCCceEEEEEecCCCC
Q 019768 180 GLLKVKVVKGINLAIRDMM-----SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEVFDHDTFS 252 (336)
Q Consensus 180 g~L~V~v~~a~~L~~~~~~-----~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~--~~~~L~v~V~d~~~~~ 252 (336)
|+|.|+|++|++|+..+.. .+||||++.++++.+||+++++++||+|||.|.|.+.. ....|.|+|||++.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 7899999999999987632 47999999999999999999999999999999999865 3346899999999999
Q ss_pred CCCeeEEEEEeCccccccccc
Q 019768 253 ADDIMGEAEIDIQPLLTSALA 273 (336)
Q Consensus 253 ~dd~iG~~~i~l~~l~~~~~~ 273 (336)
+|++||++.++|.++..+..+
T Consensus 81 ~dd~IG~~~l~L~~l~~~~~~ 101 (108)
T cd04039 81 FNDYVATGSLSVQELLNAAPQ 101 (108)
T ss_pred CCcceEEEEEEHHHHHhhCCC
Confidence 999999999999999866543
No 39
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.78 E-value=8.5e-18 Score=142.05 Aligned_cols=123 Identities=28% Similarity=0.491 Sum_probs=100.0
Q ss_pred EEEEEEEEEEEeeeecccCCC-----------------------------C--CCCcEEEEEECCeE-EEeeeeCCCCCc
Q 019768 177 EFIGLLKVKVVKGINLAIRDM-----------------------------M--SSDPYVVLRLGQQT-VQTTIVKSNLNP 224 (336)
Q Consensus 177 ~~~g~L~V~v~~a~~L~~~~~-----------------------------~--~~dPyv~i~l~~~~-~rT~~~~~t~nP 224 (336)
-..|+|.|+|++|++|+.+|. . .+||||++++++.+ .+|++++++.||
T Consensus 4 llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP 83 (158)
T cd04015 4 LLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENP 83 (158)
T ss_pred EEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCC
Confidence 457999999999999998772 1 57999999998765 599999999999
Q ss_pred eeeceeeecccCCCCceEEEEEecCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceee
Q 019768 225 VWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINI 304 (336)
Q Consensus 225 ~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~ 304 (336)
+|||.|.|.+......|.|.|||++.++ +++||.+.++++++.. +...+.||+|.+.
T Consensus 84 ~WnE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~------------g~~~~~w~~L~~~---------- 140 (158)
T cd04015 84 VWNESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLS------------GEPVEGWLPILDS---------- 140 (158)
T ss_pred ccceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccC------------CCCcceEEECcCC----------
Confidence 9999999998776678999999999874 6899999999999853 3456889986541
Q ss_pred ecCeEEEEEEEEecccccceEEEEEEEE
Q 019768 305 IDGKVKQKISLKLQNVESGELELELEWM 332 (336)
Q Consensus 305 ~~g~~~~~~~l~l~~~~~G~i~l~l~~~ 332 (336)
+|+ .....|+|+|+++|.
T Consensus 141 -~~~---------~~~~~~~l~v~~~f~ 158 (158)
T cd04015 141 -NGK---------PPKPGAKIRVSLQFT 158 (158)
T ss_pred -CCC---------CCCCCCEEEEEEEEC
Confidence 122 113468999999984
No 40
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.77 E-value=2.1e-18 Score=143.10 Aligned_cols=107 Identities=23% Similarity=0.354 Sum_probs=89.4
Q ss_pred EEEEEEEEEeeeecccCC-CC-CCCcEEEEEEC--C---eEEEeeeeCCCCCceeeceeeecccCCCCceEEEEE-ecCC
Q 019768 179 IGLLKVKVVKGINLAIRD-MM-SSDPYVVLRLG--Q---QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVF-DHDT 250 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~-~~-~~dPyv~i~l~--~---~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~-d~~~ 250 (336)
.|.|.|.|++|+||+..+ .. .+||||++++. + .++||+++++++||+|||+|.|.+......|.|+|| |++.
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~ 107 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGR 107 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCC
Confidence 488999999999999864 33 78999999993 2 367999999999999999999999866678999999 6888
Q ss_pred CCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccc
Q 019768 251 FSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALL 297 (336)
Q Consensus 251 ~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~ 297 (336)
++++++||++.|+|+.+.. +.....||+|.....+
T Consensus 108 ~~~~~~iG~~~i~L~~l~~------------~~~~~~Wy~L~~~~~~ 142 (146)
T cd04028 108 MDKKVFMGVAQILLDDLDL------------SNLVIGWYKLFPTSSL 142 (146)
T ss_pred CCCCceEEEEEEEcccccC------------CCCceeEEecCCcccc
Confidence 8899999999999999732 2235779998765443
No 41
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.77 E-value=6.9e-18 Score=136.34 Aligned_cols=100 Identities=31% Similarity=0.649 Sum_probs=86.5
Q ss_pred EEEEEEeeeecccCCCC-CCCcEEEEEECCeE-EEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCeeEE
Q 019768 182 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGE 259 (336)
Q Consensus 182 L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~-~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~iG~ 259 (336)
|.|+|++|++|...+.. .+||||++.+++.. .+|+++++++||.|||.|.|.+......|.|+|||++.+++|++||+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 81 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK 81 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence 78999999999998876 89999999997754 69999999999999999999997766789999999999999999999
Q ss_pred EEEeCcccccccccCCCCCccCceeeceeeecC
Q 019768 260 AEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSD 292 (336)
Q Consensus 260 ~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~ 292 (336)
+.+++.++... +...+.|++|.
T Consensus 82 ~~~~~~~~~~~-----------~~~~~~W~~L~ 103 (121)
T cd04054 82 VSLTREVISAH-----------PRGIDGWMNLT 103 (121)
T ss_pred EEEcHHHhccC-----------CCCCCcEEECe
Confidence 99998877421 22356798753
No 42
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.77 E-value=2.3e-18 Score=137.06 Aligned_cols=91 Identities=22% Similarity=0.372 Sum_probs=79.4
Q ss_pred eEEEEEEEEEEEeeeecccCCCCCCCcEEEEEECC----eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEec
Q 019768 176 VEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQ----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDH 248 (336)
Q Consensus 176 ~~~~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~----~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~ 248 (336)
....|.|+|+|++|++|+. .+.+||||++++.. .+++|+++++|+||+|||+|.|.++. ....|.|+|||+
T Consensus 10 ~~~~~~L~V~vikA~~L~~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~ 87 (118)
T cd08677 10 DKQKAELHVNILEAENISV--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCC 87 (118)
T ss_pred cCcCCEEEEEEEEecCCCC--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeC
Confidence 3456899999999999982 23689999999943 46799999999999999999999976 456799999999
Q ss_pred CCCCCCCeeEEEEEeCcccc
Q 019768 249 DTFSADDIMGEAEIDIQPLL 268 (336)
Q Consensus 249 ~~~~~dd~iG~~~i~l~~l~ 268 (336)
|.++++++||++.+++.++.
T Consensus 88 Drfs~~d~IG~v~l~l~~~~ 107 (118)
T cd08677 88 DRFSRHSTLGELRLKLADVS 107 (118)
T ss_pred CCCCCCceEEEEEEcccccc
Confidence 99999999999999999863
No 43
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.77 E-value=9.9e-18 Score=138.07 Aligned_cols=122 Identities=21% Similarity=0.364 Sum_probs=97.4
Q ss_pred EEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccC----------CCCceEEEEEecC
Q 019768 181 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ----------EYGPVKLEVFDHD 249 (336)
Q Consensus 181 ~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~----------~~~~L~v~V~d~~ 249 (336)
.|+|.|++|++|+..+.. .+||||++.++..+++|+++++++||.|||.|.|.+.. ....|.|+|||++
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 489999999999998876 89999999999999999999999999999999997432 1246899999999
Q ss_pred CCCCCCeeEEEEE-eCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEE
Q 019768 250 TFSADDIMGEAEI-DIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELE 328 (336)
Q Consensus 250 ~~~~dd~iG~~~i-~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~ 328 (336)
..++|++||++.+ ++..+... .......+||+|.. .+...|+|.|.
T Consensus 82 ~~~~d~~iG~~~i~~~~~~~~~---------~~~~~~~~W~~L~~------------------------~~~~~Geil~~ 128 (135)
T cd04017 82 SVGKDEFLGRSVAKPLVKLDLE---------EDFPPKLQWFPIYK------------------------GGQSAGELLAA 128 (135)
T ss_pred CCCCCccceEEEeeeeeecccC---------CCCCCCceEEEeec------------------------CCCchhheeEE
Confidence 9999999999987 44333211 12345678997532 23478999999
Q ss_pred EEEEeCC
Q 019768 329 LEWMPLD 335 (336)
Q Consensus 329 l~~~~~~ 335 (336)
++++++.
T Consensus 129 ~~~~~~~ 135 (135)
T cd04017 129 FELIEVT 135 (135)
T ss_pred eEEEEeC
Confidence 9999863
No 44
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.77 E-value=2.8e-18 Score=139.47 Aligned_cols=105 Identities=31% Similarity=0.375 Sum_probs=88.4
Q ss_pred eeEEEEEEEEEEEeeeecccCCC--CCCCcEEEEEEC-----CeEEEeeeeCCCCCceeeceeeecccC---CCCceEEE
Q 019768 175 MVEFIGLLKVKVVKGINLAIRDM--MSSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLE 244 (336)
Q Consensus 175 ~~~~~g~L~V~v~~a~~L~~~~~--~~~dPyv~i~l~-----~~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~ 244 (336)
+....|.|.|.|++|+||+..+. +.+||||++++. ..++||+++++++||+|||+|.|.+.. ....|.|+
T Consensus 10 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~ 89 (125)
T cd04029 10 YDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS 89 (125)
T ss_pred EECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 34457889999999999998765 379999999983 235799999999999999999999865 34579999
Q ss_pred EEecCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeec
Q 019768 245 VFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS 291 (336)
Q Consensus 245 V~d~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l 291 (336)
|||++.++++++||++.++|..+.. ......||||
T Consensus 90 V~d~~~~~~~~~lG~~~i~l~~~~~------------~~~~~~w~~l 124 (125)
T cd04029 90 VWHYDRFGRNTFLGEVEIPLDSWNF------------DSQHEECLPL 124 (125)
T ss_pred EEECCCCCCCcEEEEEEEeCCcccc------------cCCcccEEEC
Confidence 9999999999999999999998842 2447789985
No 45
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.76 E-value=1.4e-17 Score=136.59 Aligned_cols=117 Identities=27% Similarity=0.524 Sum_probs=97.5
Q ss_pred EEEEEEEEEEeeeecccCCC-----------CCCCcEEEEEECCeE-EEeeeeCCCCCceeeceeeecccCCCCceEEEE
Q 019768 178 FIGLLKVKVVKGINLAIRDM-----------MSSDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEV 245 (336)
Q Consensus 178 ~~g~L~V~v~~a~~L~~~~~-----------~~~dPyv~i~l~~~~-~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V 245 (336)
+.|.|+|+|++|++|...+. ..+||||++.++++. .+|+++.++.||.|||+|.|.+.. ...|.|.|
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-~~~l~~~v 80 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-GRNLELTV 80 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-CCEEEEEE
Confidence 46899999999999988775 268999999998765 599999999999999999999974 47899999
Q ss_pred EecCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceE
Q 019768 246 FDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGEL 325 (336)
Q Consensus 246 ~d~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i 325 (336)
||++.++.+++||.+.++|.++... ++...+.||+ |+ +.|+|
T Consensus 81 ~d~~~~~~~~~iG~~~i~l~~l~~~----------~~~~~~~w~~--------------------------L~--~~G~l 122 (132)
T cd04014 81 FHDAAIGPDDFVANCTISFEDLIQR----------GSGSFDLWVD--------------------------LE--PQGKL 122 (132)
T ss_pred EeCCCCCCCceEEEEEEEhHHhccc----------CCCcccEEEE--------------------------cc--CCcEE
Confidence 9999988999999999999998642 1233566775 33 56899
Q ss_pred EEEEEEEe
Q 019768 326 ELELEWMP 333 (336)
Q Consensus 326 ~l~l~~~~ 333 (336)
+|++.|..
T Consensus 123 ~l~~~~~~ 130 (132)
T cd04014 123 HVKIELKG 130 (132)
T ss_pred EEEEEEec
Confidence 99998864
No 46
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.76 E-value=9.8e-18 Score=134.76 Aligned_cols=105 Identities=22% Similarity=0.366 Sum_probs=87.4
Q ss_pred EEEEEEEEeeeecccCCCCCCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCeeEE
Q 019768 180 GLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGE 259 (336)
Q Consensus 180 g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~iG~ 259 (336)
+.|.|+|++|++|...+ ..||||+|.+++++.+|+++++ .||.|||.|.|.+......|.|+|||++.+ .||+||+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~--~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG~ 77 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD--KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVGT 77 (127)
T ss_pred ceEEEEEEEeeCCCCCC--CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceEE
Confidence 67999999999997755 4599999999999999999988 599999999999977666799999999975 8999999
Q ss_pred EEEeCcccccccccCCCCCccCceeeceeeecCCccccc
Q 019768 260 AEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLE 298 (336)
Q Consensus 260 ~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~ 298 (336)
+.|+|.++..+. ...-..||+|..+-...
T Consensus 78 v~i~L~~v~~~~----------~~~~~~Wy~L~~~~~~~ 106 (127)
T cd08394 78 VWIPLSTIRQSN----------EEGPGEWLTLDSEVNMK 106 (127)
T ss_pred EEEEhHHcccCC----------CCCCCccEecChHHhcc
Confidence 999999986542 12236799976544433
No 47
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.76 E-value=4.4e-18 Score=135.13 Aligned_cols=103 Identities=40% Similarity=0.687 Sum_probs=88.9
Q ss_pred EEEEEEeeeecccCCC-C-CCCcEEEEEECCeEEEeeeeCCCCCcee-eceeeecccCC---CCceEEEEEecCCCCCCC
Q 019768 182 LKVKVVKGINLAIRDM-M-SSDPYVVLRLGQQTVQTTIVKSNLNPVW-NEELMLSVPQE---YGPVKLEVFDHDTFSADD 255 (336)
Q Consensus 182 L~V~v~~a~~L~~~~~-~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W-~e~f~f~v~~~---~~~L~v~V~d~~~~~~dd 255 (336)
|.|+|++|++|+..+. . .+||||++++++.+++|+++++++||.| ||.|.|.+... ...|.|+|||++.+++++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 6899999999998874 3 7899999999999999999999999999 99999998762 368999999999999999
Q ss_pred eeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768 256 IMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 256 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~ 293 (336)
+||++.+++.++.... ......+||+|-+
T Consensus 81 ~iG~~~~~l~~l~~~~---------~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKD---------SVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccC---------CccccCCeEEccc
Confidence 9999999999986421 1345788998644
No 48
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.75 E-value=8.5e-18 Score=132.37 Aligned_cols=99 Identities=25% Similarity=0.433 Sum_probs=87.0
Q ss_pred EEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCCCCCCCeeEE
Q 019768 182 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDIMGE 259 (336)
Q Consensus 182 L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~~~dd~iG~ 259 (336)
|.|+|++|++|+..+.. .+||||+++++++.++|+++.++.||+|||.|.|.+.. ....|.|+|||++. +++||+
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG~ 78 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLGS 78 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccEE
Confidence 88999999999988766 89999999999999999999999999999999999986 45679999999886 789999
Q ss_pred EEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768 260 AEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 260 ~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~ 293 (336)
+.++|.++... .+...+.||+|.+
T Consensus 79 ~~i~l~~l~~~----------~~~~~~~w~~L~~ 102 (105)
T cd04050 79 LTLPLSELLKE----------PDLTLDQPFPLDN 102 (105)
T ss_pred EEEEHHHhhcc----------ccceeeeeEecCC
Confidence 99999998642 1346789998654
No 49
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.75 E-value=3e-17 Score=133.57 Aligned_cols=121 Identities=18% Similarity=0.351 Sum_probs=97.8
Q ss_pred EEEEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCee
Q 019768 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIM 257 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~i 257 (336)
..+|+|+|++|++|...+.. .+||||++.++++.++|++++++.||.|||.|.|.+......|.|+|||++.+ .|++|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~l 80 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEFL 80 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCce
Confidence 36799999999999988876 89999999999999999999999999999999998877777899999999987 58999
Q ss_pred EEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEEEe
Q 019768 258 GEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMP 333 (336)
Q Consensus 258 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~ 333 (336)
|.+.+++.++.. ....||+|.... -...+...|.|.|++...+
T Consensus 81 G~~~~~l~~~~~--------------~~~~~~~l~~~~-------------------~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 81 GQATLSADPNDS--------------QTLRTLPLRKRG-------------------RDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred EEEEEecccCCC--------------cCceEEEcccCC-------------------CCCCCCCCCEEEEEEEEcc
Confidence 999999987521 123566642100 0134567788888888765
No 50
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.75 E-value=7.2e-18 Score=140.62 Aligned_cols=104 Identities=22% Similarity=0.322 Sum_probs=85.7
Q ss_pred EEEEEEEeeeecccCCCCCCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeeccc------------C----CCC
Q 019768 181 LLKVKVVKGINLAIRDMMSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVP------------Q----EYG 239 (336)
Q Consensus 181 ~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~------------~----~~~ 239 (336)
.|+|.|++|++|.. ..+.+||||++++.. .+++|+++++++||+|||.|.|.+. . ...
T Consensus 1 kL~V~Vi~ArnL~~-~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 1 KLSVRVIECSDLAL-KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred CEEEEEEeCcCCCC-CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 38999999999998 334889999999965 5679999999999999999999984 1 124
Q ss_pred ceEEEEEecCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCccc
Q 019768 240 PVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNAL 296 (336)
Q Consensus 240 ~L~v~V~d~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~ 296 (336)
.|.|.|||++.+++|+|||++.|+|..+..+ ......||+|..+..
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~-----------~~~~~~W~~L~~~~~ 125 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQ-----------AGSHQAWYFLQPREE 125 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEeccccccc-----------CCcCcceeecCCccc
Confidence 6899999999988999999999999998532 123578999876543
No 51
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.74 E-value=3.1e-17 Score=133.60 Aligned_cols=115 Identities=21% Similarity=0.286 Sum_probs=95.0
Q ss_pred EEeeeecccCCCCCCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCCCCCCCeeEEEEE
Q 019768 186 VVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTFSADDIMGEAEI 262 (336)
Q Consensus 186 v~~a~~L~~~~~~~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~~~dd~iG~~~i 262 (336)
|++|++|+. ..+.+||||+++++..+++|++++++.||+|||.|.|.+.. ....|.|+|||++.+++|++||++.+
T Consensus 2 vi~a~~L~~-~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~ 80 (127)
T cd08373 2 VVSLKNLPG-LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATV 80 (127)
T ss_pred eEEeeCCcc-cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEE
Confidence 789999998 34489999999999999999999999999999999999864 35789999999999989999999999
Q ss_pred eCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEEEeCC
Q 019768 263 DIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPLD 335 (336)
Q Consensus 263 ~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~~~ 335 (336)
+|.++.. +.....|++|.+.. .....|+|+++++|.|.+
T Consensus 81 ~l~~l~~------------~~~~~~~~~L~~~~----------------------~~~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 81 SLQDLVS------------EGLLEVTEPLLDSN----------------------GRPTGATISLEVSYQPPD 119 (127)
T ss_pred EhhHccc------------CCceEEEEeCcCCC----------------------CCcccEEEEEEEEEeCCC
Confidence 9999853 23456677754310 111368999999999975
No 52
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.74 E-value=8.1e-18 Score=136.73 Aligned_cols=102 Identities=30% Similarity=0.428 Sum_probs=86.2
Q ss_pred EEEEEEEEEEeeeecccCCCC--CCCcEEEEEEC-----CeEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEe
Q 019768 178 FIGLLKVKVVKGINLAIRDMM--SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFD 247 (336)
Q Consensus 178 ~~g~L~V~v~~a~~L~~~~~~--~~dPyv~i~l~-----~~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d 247 (336)
..+.|+|+|++|+||+..+.. .+||||++++. ..+++|+++++++||+|||.|.|.+.. ....|.|+|||
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d 92 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWH 92 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEe
Confidence 357899999999999998853 79999999993 235799999999999999999999864 34679999999
Q ss_pred cCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeec
Q 019768 248 HDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS 291 (336)
Q Consensus 248 ~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l 291 (336)
++.++++++||++.++|.++... .....||+|
T Consensus 93 ~~~~~~~~~iG~~~i~L~~~~~~------------~~~~~W~~L 124 (125)
T cd08393 93 RDSLGRNSFLGEVEVDLGSWDWS------------NTQPTWYPL 124 (125)
T ss_pred CCCCCCCcEeEEEEEecCccccC------------CCCcceEEC
Confidence 99999999999999999998422 235679875
No 53
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.74 E-value=1.3e-17 Score=136.01 Aligned_cols=105 Identities=24% Similarity=0.279 Sum_probs=88.4
Q ss_pred EEEEEEEEEEeeeecccCCC--CCCCcEEEEEEC-----CeEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEe
Q 019768 178 FIGLLKVKVVKGINLAIRDM--MSSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFD 247 (336)
Q Consensus 178 ~~g~L~V~v~~a~~L~~~~~--~~~dPyv~i~l~-----~~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d 247 (336)
..+.|.|.|++|+||+..+. +.+||||++++. ..++||++++++.||+|||+|.|.+.. ....|.|.|||
T Consensus 13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~ 92 (128)
T cd08392 13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWH 92 (128)
T ss_pred CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEe
Confidence 35789999999999998875 488999999983 236799999999999999999999865 34689999999
Q ss_pred cCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeec
Q 019768 248 HDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS 291 (336)
Q Consensus 248 ~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l 291 (336)
++.++++++||++.|+|.++... ..+....+||+|
T Consensus 93 ~~~~~~~~~lG~~~i~L~~~~~~---------~~~~~~~~W~~l 127 (128)
T cd08392 93 SRTLKRRVFLGEVLIPLADWDFE---------DTDSQRFLWYPL 127 (128)
T ss_pred CCCCcCcceEEEEEEEcCCcccC---------CCCccccceEEC
Confidence 99999999999999999988422 124567789974
No 54
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.74 E-value=2.1e-17 Score=133.99 Aligned_cols=103 Identities=32% Similarity=0.565 Sum_probs=88.3
Q ss_pred EEEEEEEEEEeeeecccCCCC-CCCcEEEEEEC---CeEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCC
Q 019768 178 FIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDT 250 (336)
Q Consensus 178 ~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~---~~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~ 250 (336)
..|.|.|+|++|++|+..+.. .+||||++++. ...++|++++++.||+|||.|.|.+.. ....|.|+|||++.
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~ 93 (124)
T cd08387 14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ 93 (124)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC
Confidence 358899999999999998876 89999999983 346899999999999999999999865 24579999999999
Q ss_pred CCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecC
Q 019768 251 FSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSD 292 (336)
Q Consensus 251 ~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~ 292 (336)
++++++||++.++|.++..+ ...+.||+|+
T Consensus 94 ~~~~~~iG~~~i~l~~~~~~------------~~~~~W~~l~ 123 (124)
T cd08387 94 FSRDECIGVVELPLAEVDLS------------EKLDLWRKIQ 123 (124)
T ss_pred CCCCceeEEEEEecccccCC------------CCcceEEECc
Confidence 99999999999999998532 2567899753
No 55
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.73 E-value=4.8e-17 Score=131.79 Aligned_cols=87 Identities=30% Similarity=0.559 Sum_probs=78.8
Q ss_pred EEEEEEeeeecccCCCC-CCCcEEEEEEC-CeEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCC--CCee
Q 019768 182 LKVKVVKGINLAIRDMM-SSDPYVVLRLG-QQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSA--DDIM 257 (336)
Q Consensus 182 L~V~v~~a~~L~~~~~~-~~dPyv~i~l~-~~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~--dd~i 257 (336)
|+|+|++|++|+..+.. .+||||+++++ .+.++|+++++++||.|||.|.|.+.. ...|.|+|||++.++. |++|
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~l 80 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFL 80 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceE
Confidence 78999999999988876 89999999996 677899999999999999999999976 6789999999998875 5799
Q ss_pred EEEEEeCccccc
Q 019768 258 GEAEIDIQPLLT 269 (336)
Q Consensus 258 G~~~i~l~~l~~ 269 (336)
|++.+++.++..
T Consensus 81 G~~~i~l~~l~~ 92 (123)
T cd08382 81 GCVRIRANAVLP 92 (123)
T ss_pred eEEEEEHHHccc
Confidence 999999999864
No 56
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.73 E-value=1.7e-17 Score=131.97 Aligned_cols=89 Identities=35% Similarity=0.631 Sum_probs=79.3
Q ss_pred EEEEEEEEeeeecccCCCC--CCCcEEEEEEC---CeEEEeeeeCCCCCceeeceeeecccC----CCCceEEEEEecCC
Q 019768 180 GLLKVKVVKGINLAIRDMM--SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDHDT 250 (336)
Q Consensus 180 g~L~V~v~~a~~L~~~~~~--~~dPyv~i~l~---~~~~rT~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~V~d~~~ 250 (336)
|+|+|+|++|++|+..+.. .+||||++++. ...++|+++++++||+|||.|.|.+.. ....|.|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 7899999999999988764 78999999983 346799999999999999999998754 24679999999999
Q ss_pred CCCCCeeEEEEEeCcccc
Q 019768 251 FSADDIMGEAEIDIQPLL 268 (336)
Q Consensus 251 ~~~dd~iG~~~i~l~~l~ 268 (336)
+++|++||++.+++.++.
T Consensus 81 ~~~dd~lG~~~i~l~~l~ 98 (111)
T cd04041 81 FTADDRLGRVEIDLKELI 98 (111)
T ss_pred CCCCCcceEEEEEHHHHh
Confidence 999999999999999986
No 57
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.73 E-value=2e-17 Score=133.27 Aligned_cols=101 Identities=17% Similarity=0.309 Sum_probs=84.5
Q ss_pred EEEEEEEEEeeeecccCCCCCCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccC--CCCceEEEEEecCCC
Q 019768 179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEVFDHDTF 251 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~--~~~~L~v~V~d~~~~ 251 (336)
.+.|.|+|++|+||+..+.+.+||||++++.. .+++|++++++.||+|||+|.|.+.. ....|.|+|||++..
T Consensus 11 ~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~ 90 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK 90 (119)
T ss_pred CCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC
Confidence 57899999999999998855899999999943 35699999999999999999999865 235688999999987
Q ss_pred C-CCCeeEEEEEeCcccccccccCCCCCccCceeeceeeec
Q 019768 252 S-ADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS 291 (336)
Q Consensus 252 ~-~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l 291 (336)
+ ++++||.+.|+|.++.. +..+.+||.|
T Consensus 91 ~~~~~~lG~~~i~l~~~~~------------~~~~~~Wy~l 119 (119)
T cd08685 91 SRDSGLLGCMSFGVKSIVN------------QKEISGWYYL 119 (119)
T ss_pred cCCCEEEEEEEecHHHhcc------------CccccceEeC
Confidence 5 47899999999999852 2346789863
No 58
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.73 E-value=3.6e-17 Score=130.10 Aligned_cols=101 Identities=23% Similarity=0.422 Sum_probs=86.5
Q ss_pred EEEEEEEeeeecccCCCCCCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCC-----CCceEEEEEecCCCCCCC
Q 019768 181 LLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQE-----YGPVKLEVFDHDTFSADD 255 (336)
Q Consensus 181 ~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~-----~~~L~v~V~d~~~~~~dd 255 (336)
.|+|+|++|++|. ...+||||++++++++++|++++++.||.|||.|.|.+... ...|.|+|||++.+++++
T Consensus 5 ~l~V~v~~a~~L~---~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~ 81 (111)
T cd04011 5 QVRVRVIEARQLV---GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDT 81 (111)
T ss_pred EEEEEEEEcccCC---CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCC
Confidence 4899999999998 23789999999999999999999999999999999987532 357999999999998999
Q ss_pred eeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768 256 IMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 256 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~ 293 (336)
+||++.++|.++..+ .....+.+||+|.+
T Consensus 82 ~iG~~~i~l~~v~~~---------~~~~~~~~w~~L~~ 110 (111)
T cd04011 82 LIGSFKLDVGTVYDQ---------PDHAFLRKWLLLTD 110 (111)
T ss_pred ccEEEEECCccccCC---------CCCcceEEEEEeeC
Confidence 999999999998643 23456789998644
No 59
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.73 E-value=5.3e-17 Score=132.30 Aligned_cols=99 Identities=29% Similarity=0.598 Sum_probs=84.9
Q ss_pred EEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCC--------
Q 019768 181 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTF-------- 251 (336)
Q Consensus 181 ~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~-------- 251 (336)
.|+|+|++|++|+..+.. .+||||+++++...++|+++.++.||.|||.|.|.+......|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~ 81 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK 81 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence 589999999999998876 88999999999889999999999999999999998865557899999999852
Q ss_pred ---CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768 252 ---SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 252 ---~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~ 293 (336)
+.+++||.+.+++.++.. ....||+|..
T Consensus 82 ~~~~~~~~iG~~~i~l~~~~~--------------~~~~w~~L~~ 112 (127)
T cd04027 82 FTRESDDFLGQTIIEVRTLSG--------------EMDVWYNLEK 112 (127)
T ss_pred ccccCCCcceEEEEEhHHccC--------------CCCeEEECcc
Confidence 468999999999987631 2357998654
No 60
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.73 E-value=2.3e-17 Score=133.64 Aligned_cols=91 Identities=19% Similarity=0.215 Sum_probs=80.8
Q ss_pred EEEEEEEEEEeeeecccCCCC-CCCcEEEEEEC------CeEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEe
Q 019768 178 FIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG------QQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFD 247 (336)
Q Consensus 178 ~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~------~~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d 247 (336)
..+.|.|.|++|+||+..+.. .+||||++++- ..+++|++++++.||+|||+|.|+++. ....|.|+|||
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~ 91 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCS 91 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEe
Confidence 357899999999999998765 78999999982 246899999999999999999999875 45689999999
Q ss_pred cCCCCCCCeeEEEEEeCcccc
Q 019768 248 HDTFSADDIMGEAEIDIQPLL 268 (336)
Q Consensus 248 ~~~~~~dd~iG~~~i~l~~l~ 268 (336)
++.++++++||.+.|+|.++.
T Consensus 92 ~~~~~~~~~lG~~~i~L~~~~ 112 (124)
T cd08680 92 VGPDQQEECLGGAQISLADFE 112 (124)
T ss_pred CCCCCceeEEEEEEEEhhhcc
Confidence 999999999999999999884
No 61
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.72 E-value=2.5e-16 Score=130.43 Aligned_cols=132 Identities=15% Similarity=0.201 Sum_probs=101.8
Q ss_pred eeEEEEEEEEEEEeeeecccCCCCCCCcEEEEEECCeEE-EeeeeCCCCCceeeceeeecccCCCCceEEEEEecCC-CC
Q 019768 175 MVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTV-QTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDT-FS 252 (336)
Q Consensus 175 ~~~~~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~~~-rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~-~~ 252 (336)
.......|.|.|++|++|+.++ +|||.+.+++..+ ||+++.++.||.|+|.|.|........|.|.||+.+. .+
T Consensus 6 ~~R~~~sL~v~V~EAk~Lp~~~----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~ 81 (146)
T cd04013 6 SRRTENSLKLWIIEAKGLPPKK----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKK 81 (146)
T ss_pred ceEEEEEEEEEEEEccCCCCcC----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccc
Confidence 3456678999999999998876 8999999999885 9999999999999999999876666789999986543 22
Q ss_pred ---CCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEE
Q 019768 253 ---ADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELEL 329 (336)
Q Consensus 253 ---~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l 329 (336)
++++||.+.||+..+. .+..+++|||+.+......+. | .-.....++|++++
T Consensus 82 ~~~~~~~IG~V~Ip~~~l~------------~~~~ve~Wfpl~~~~~~~~~~-----~--------~~~~~~~~~lrik~ 136 (146)
T cd04013 82 KKDKSQLIGTVNIPVTDVS------------SRQFVEKWYPVSTPKGNGKSG-----G--------KEGKGESPSIRIKA 136 (146)
T ss_pred cccCCcEEEEEEEEHHHhc------------CCCcccEEEEeecCCCCCccc-----c--------ccccCCCCEEEEEE
Confidence 5789999999999985 345688999975522211100 0 01123558999999
Q ss_pred EEEeCC
Q 019768 330 EWMPLD 335 (336)
Q Consensus 330 ~~~~~~ 335 (336)
+|.++.
T Consensus 137 rf~~~~ 142 (146)
T cd04013 137 RYQSTR 142 (146)
T ss_pred EEEEee
Confidence 999864
No 62
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.72 E-value=1.4e-16 Score=129.42 Aligned_cols=88 Identities=31% Similarity=0.501 Sum_probs=78.3
Q ss_pred EEEEEEEeeeecccCCCC-CCCcEEEEEECC---eEEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCCCCCCC
Q 019768 181 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ---QTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADD 255 (336)
Q Consensus 181 ~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~---~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~~~dd 255 (336)
.|+|+|++|++|+..+.. .+||||++.+.. ...+|++++++.||.|||+|.|.+.. ....|.|+|||++.+++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 589999999999998876 889999999854 35799999999999999999999977 3567999999999988999
Q ss_pred eeEEEEEeCcccc
Q 019768 256 IMGEAEIDIQPLL 268 (336)
Q Consensus 256 ~iG~~~i~l~~l~ 268 (336)
+||++.++|..+.
T Consensus 82 ~iG~~~i~l~~~~ 94 (126)
T cd04043 82 LCGRASLKLDPKR 94 (126)
T ss_pred eEEEEEEecCHHH
Confidence 9999999998764
No 63
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.72 E-value=4.5e-17 Score=131.99 Aligned_cols=101 Identities=29% Similarity=0.510 Sum_probs=86.6
Q ss_pred EEEEEEEEEeeeecccCCCC-CCCcEEEEEEC---CeEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCCC
Q 019768 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTF 251 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~---~~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~ 251 (336)
.+.|+|+|++|++|+..+.. .+||||++++. ...++|++++++.||+|||.|.|.+.. ....|.|+|||++.+
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~ 94 (124)
T cd08385 15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRF 94 (124)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCC
Confidence 47899999999999988876 88999999984 346799999999999999999999865 245799999999999
Q ss_pred CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeec
Q 019768 252 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS 291 (336)
Q Consensus 252 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l 291 (336)
+++++||++.++|.++.. +...+.||++
T Consensus 95 ~~~~~lG~~~i~l~~~~~------------~~~~~~W~~l 122 (124)
T cd08385 95 SKHDLIGEVRVPLLTVDL------------GHVTEEWRDL 122 (124)
T ss_pred CCCceeEEEEEecCcccC------------CCCcceEEEc
Confidence 999999999999998743 3456778863
No 64
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.71 E-value=7.6e-17 Score=134.75 Aligned_cols=89 Identities=27% Similarity=0.458 Sum_probs=79.6
Q ss_pred EEEEEEEeeeecccCCCC---------------CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccC--CCCceEE
Q 019768 181 LLKVKVVKGINLAIRDMM---------------SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKL 243 (336)
Q Consensus 181 ~L~V~v~~a~~L~~~~~~---------------~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~--~~~~L~v 243 (336)
.|.|+|++|++|+.++.. .+||||++.+++++.+|+++++++||+|||+|.|.+.. ....|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 378999999999988733 47999999999999999999999999999999998643 4568999
Q ss_pred EEEecCCCCCCCeeEEEEEeCccccc
Q 019768 244 EVFDHDTFSADDIMGEAEIDIQPLLT 269 (336)
Q Consensus 244 ~V~d~~~~~~dd~iG~~~i~l~~l~~ 269 (336)
+|||++..++|++||.+.++|.++..
T Consensus 81 ~v~D~d~~~~dd~iG~~~l~l~~l~~ 106 (151)
T cd04018 81 QIRDWDRVGNDDVIGTHFIDLSKISN 106 (151)
T ss_pred EEEECCCCCCCCEEEEEEEeHHHhcc
Confidence 99999999999999999999998864
No 65
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.70 E-value=1.7e-16 Score=129.49 Aligned_cols=90 Identities=28% Similarity=0.458 Sum_probs=77.7
Q ss_pred EEEEEEEEEeeeecccCCC--CCCCcEEEEEEC---CeEEEeeeeCCCCCceeeceeeec-ccC---CCCceEEEEEecC
Q 019768 179 IGLLKVKVVKGINLAIRDM--MSSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLS-VPQ---EYGPVKLEVFDHD 249 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~--~~~dPyv~i~l~---~~~~rT~~~~~t~nP~W~e~f~f~-v~~---~~~~L~v~V~d~~ 249 (336)
.+.|+|+|++|++|+..+. +.+||||++.+. .++.||+++++++||+|||+|.|. +.. ....|.|+|||++
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d 94 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFD 94 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcC
Confidence 4789999999999998775 378999999984 346799999999999999999994 443 2346999999999
Q ss_pred CCCCCCeeEEEEEeCcccc
Q 019768 250 TFSADDIMGEAEIDIQPLL 268 (336)
Q Consensus 250 ~~~~dd~iG~~~i~l~~l~ 268 (336)
.+++|++||++.++|.++-
T Consensus 95 ~~~~d~~lG~~~i~L~~l~ 113 (128)
T cd08388 95 RYSRDDVIGEVVCPLAGAD 113 (128)
T ss_pred CCCCCceeEEEEEeccccC
Confidence 9999999999999999883
No 66
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.70 E-value=9e-17 Score=130.49 Aligned_cols=91 Identities=26% Similarity=0.387 Sum_probs=80.2
Q ss_pred EEEEEEEEEEeeeecccCCCCCCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccC--CCCceEEEEEecCCCCCCC
Q 019768 178 FIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEVFDHDTFSADD 255 (336)
Q Consensus 178 ~~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~--~~~~L~v~V~d~~~~~~dd 255 (336)
-.|.|+|+|++|++|+......+||||+|+++++.++|++++++.||+|||+|.|.... ....|.|+|||++.+++|+
T Consensus 26 ~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd 105 (127)
T cd04032 26 GLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDD 105 (127)
T ss_pred CcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCC
Confidence 46899999999999985333388999999999889999999999999999999997432 4678999999999999999
Q ss_pred eeEEEEEeCcccc
Q 019768 256 IMGEAEIDIQPLL 268 (336)
Q Consensus 256 ~iG~~~i~l~~l~ 268 (336)
+||.+.++|....
T Consensus 106 ~IG~~~i~l~~~~ 118 (127)
T cd04032 106 LLGTCSVVPEAGV 118 (127)
T ss_pred eeEEEEEEecCCc
Confidence 9999999998764
No 67
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.70 E-value=1.2e-16 Score=129.90 Aligned_cols=101 Identities=30% Similarity=0.402 Sum_probs=86.2
Q ss_pred EEEEEEEEEeeeecccCCCC-CCCcEEEEEEC-----CeEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecC
Q 019768 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHD 249 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~-----~~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~ 249 (336)
.+.|+|+|++|++|+..+.. .+||||++.+. ..+++|++++++.||+|||+|.|.+.. ....|.|.|||++
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~ 94 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSK 94 (127)
T ss_pred CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECC
Confidence 47899999999999998876 89999999984 457899999999999999999999864 2467999999998
Q ss_pred CC--CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeec
Q 019768 250 TF--SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS 291 (336)
Q Consensus 250 ~~--~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l 291 (336)
.+ +++++||++.++|.++..+ .....||+|
T Consensus 95 ~~~~~~~~~iG~~~i~l~~l~~~------------~~~~~W~~L 126 (127)
T cd04030 95 SFLSREKKLLGQVLIDLSDLDLS------------KGFTQWYDL 126 (127)
T ss_pred cccCCCCceEEEEEEeccccccc------------CCccceEEC
Confidence 75 6899999999999998432 345779874
No 68
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.70 E-value=1e-16 Score=129.96 Aligned_cols=92 Identities=29% Similarity=0.409 Sum_probs=80.4
Q ss_pred eEEEEEEEEEEEeeeecccCCCC-CCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccC----CCCceEEEE
Q 019768 176 VEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEV 245 (336)
Q Consensus 176 ~~~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~V 245 (336)
....+.|.|+|++|++|+..+.. .+||||++++.. .+++|++++++.||+|||+|.|.+.. ....|.|+|
T Consensus 12 ~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V 91 (125)
T cd04031 12 DKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTV 91 (125)
T ss_pred eCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEE
Confidence 34458899999999999998876 899999999954 56799999999999999999998643 346799999
Q ss_pred EecCCCCCCCeeEEEEEeCccc
Q 019768 246 FDHDTFSADDIMGEAEIDIQPL 267 (336)
Q Consensus 246 ~d~~~~~~dd~iG~~~i~l~~l 267 (336)
||++.++++++||++.++|.+.
T Consensus 92 ~d~~~~~~~~~iG~~~i~l~~~ 113 (125)
T cd04031 92 WDYDRDGENDFLGEVVIDLADA 113 (125)
T ss_pred EeCCCCCCCcEeeEEEEecccc
Confidence 9999998999999999999883
No 69
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.70 E-value=1.3e-16 Score=129.43 Aligned_cols=102 Identities=28% Similarity=0.458 Sum_probs=88.8
Q ss_pred EEEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCC-CCCceeeceeeecccCC----CCceEEEEEecCCCCC
Q 019768 180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKS-NLNPVWNEELMLSVPQE----YGPVKLEVFDHDTFSA 253 (336)
Q Consensus 180 g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~-t~nP~W~e~f~f~v~~~----~~~L~v~V~d~~~~~~ 253 (336)
|.|.|.|++|++|+..+.. .+||||++++++..++|++..+ +.||.|||.|.|.+... ...|.|+|||++.++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 6799999999999988776 8999999999999999999885 89999999999999764 4679999999999989
Q ss_pred CCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768 254 DDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 254 dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~ 293 (336)
+++||.+.++|.++... ...+.||+|..
T Consensus 81 d~~iG~~~i~l~~l~~~------------~~~~~~~~l~p 108 (124)
T cd04049 81 DDFIGEATIHLKGLFEE------------GVEPGTAELVP 108 (124)
T ss_pred CCeEEEEEEEhHHhhhC------------CCCcCceEeec
Confidence 99999999999998643 23467887654
No 70
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=99.70 E-value=3e-17 Score=154.61 Aligned_cols=126 Identities=21% Similarity=0.439 Sum_probs=103.7
Q ss_pred CCCCh-HHHHHHHHhCCCCCCCcCCCCCCC-CeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhc
Q 019768 15 KPSSG-KGRLKDLLLQRDNRICADCGAPDP-KWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVG 92 (336)
Q Consensus 15 ~~~~~-~~~l~~~~~~~~N~~C~dC~~~~p-~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~g 92 (336)
++|.. ++++|++++.|+|+.|++|....+ +|+++..|.|+|+.|+|+.|.|.. -+|||||+|.++++.|+..++. +
T Consensus 7 e~E~~~ek~iR~l~kLP~NrrC~nCnsl~~~t~~~~~~g~fv~~~~sg~ls~l~~-ahRvksiSmttft~qevs~lQs-h 84 (524)
T KOG0702|consen 7 EDEYDYEKEIRRLLKLPENRRCINCNSLVAATYVVYTVGSFVCTMCSGLLSGLNP-AHRVKSISMTTFTDQEVSFLQS-H 84 (524)
T ss_pred cchhHHHHHHHHHhcCCCCCceeeccccccceEEEeeccceeeeccchhhccCCC-ccccceeeeeeccccchHHHhh-c
Confidence 34545 899999999999999999999888 999999999999999999999843 4699999999999999999987 5
Q ss_pred cccccchhhhhccCCCCCCCCCCC-CHHHHHHHHHhhhccceecCCcccccC
Q 019768 93 GNSSANAIYEAFIPEGVSKPGPDS-SHEIRSKFIRSKYELQEFLKPSLRIAS 143 (336)
Q Consensus 93 gN~~~n~~~e~~~~~~~~~p~~~~-~~~~r~~fI~~KY~~k~~~~~~~~~~s 143 (336)
||..+.++|....+.. +.--|+. .....++|+|.||+.++|+.+.-....
T Consensus 85 gNq~~k~i~fkl~D~q-~S~vPD~rn~~~~kef~q~~y~~kr~~v~~n~~k~ 135 (524)
T KOG0702|consen 85 GNQVCKEIWFKLFDFQ-RSNVPDSRNPQKVKEFQQEKYVKKRYYVPKNQMKI 135 (524)
T ss_pred chhhhhhhhhcchhhh-hccCCCcccchhhHHHHhhhhccceeecCcccccc
Confidence 9999999998765543 2222222 334457999999999999987644433
No 71
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.69 E-value=2.2e-16 Score=128.12 Aligned_cols=101 Identities=28% Similarity=0.510 Sum_probs=85.6
Q ss_pred EEEEEEEEEeeeecccCCCC-CCCcEEEEEE---CCeEEEeeeeCCCCCceeeceeeecccC----CCCceEEEEEecCC
Q 019768 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDHDT 250 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l---~~~~~rT~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~V~d~~~ 250 (336)
.+.|.|.|++|++|+..+.. .+||||++.+ +....+|++++++.||.|||.|.|.+.. ....|.|+|||++.
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~ 94 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR 94 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC
Confidence 46899999999999988876 8999999998 3466899999999999999999997532 23569999999999
Q ss_pred CCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeec
Q 019768 251 FSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS 291 (336)
Q Consensus 251 ~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l 291 (336)
++++++||++.++|.++.. +.....||+|
T Consensus 95 ~~~~~~iG~~~i~l~~l~~------------~~~~~~W~~l 123 (125)
T cd08386 95 FSRNDPIGEVSLPLNKVDL------------TEEQTFWKDL 123 (125)
T ss_pred CcCCcEeeEEEEecccccC------------CCCcceEEec
Confidence 9999999999999999842 3346778875
No 72
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.69 E-value=2e-16 Score=127.59 Aligned_cols=101 Identities=27% Similarity=0.446 Sum_probs=88.4
Q ss_pred EEEEEEEEeeeecccCCCC-CCCcEEEEEECC-eEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCee
Q 019768 180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIM 257 (336)
Q Consensus 180 g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~i 257 (336)
|.|.|+|++|++|+..+.. .+||||++++++ ...+|+++.++.||.|||.|.|.+......|.|+|||++.+++|++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I 80 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL 80 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence 6899999999999998866 899999999976 46899999999999999999999877667899999999999999999
Q ss_pred EEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768 258 GEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 258 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~ 293 (336)
|++.+++.++... ..+.||.+.+
T Consensus 81 G~~~~~l~~l~~~-------------~~~~~~~~~~ 103 (120)
T cd04045 81 GSVEINVSDLIKK-------------NEDGKYVEYD 103 (120)
T ss_pred eEEEEeHHHhhCC-------------CCCceEEecC
Confidence 9999999998643 2367886544
No 73
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.69 E-value=1.6e-16 Score=128.37 Aligned_cols=102 Identities=31% Similarity=0.486 Sum_probs=86.0
Q ss_pred EEEEEEEEEEeeeecccCC-CC-CCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEe
Q 019768 178 FIGLLKVKVVKGINLAIRD-MM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFD 247 (336)
Q Consensus 178 ~~g~L~V~v~~a~~L~~~~-~~-~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d 247 (336)
..+.|+|+|++|++|+..+ .. .+||||++++.. .+.+|++++++.||+|||+|.|.+.. ....|.|+|||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d 91 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWH 91 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEe
Confidence 4588999999999999888 44 899999998831 45799999999999999999999865 24679999999
Q ss_pred cCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeec
Q 019768 248 HDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS 291 (336)
Q Consensus 248 ~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l 291 (336)
++.++++++||++.++|.++..+ .....||+|
T Consensus 92 ~~~~~~~~~iG~~~i~l~~l~~~------------~~~~~w~~l 123 (123)
T cd08521 92 HDRFGRNTFLGEVEIPLDSWDLD------------SQQSEWYPL 123 (123)
T ss_pred CCCCcCCceeeEEEEeccccccc------------CCCccEEEC
Confidence 99999999999999999998422 235779874
No 74
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.68 E-value=1.8e-16 Score=128.58 Aligned_cols=91 Identities=21% Similarity=0.432 Sum_probs=81.3
Q ss_pred EEEEEEEeeeecccCCCC-CCCcEEEEEECC-eEEEeeeeC-CCCCceeeceeeecccCC-----CCceEEEEEecCCCC
Q 019768 181 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-QTVQTTIVK-SNLNPVWNEELMLSVPQE-----YGPVKLEVFDHDTFS 252 (336)
Q Consensus 181 ~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-~~~rT~~~~-~t~nP~W~e~f~f~v~~~-----~~~L~v~V~d~~~~~ 252 (336)
.|+|+|++|++|+..+.. .+||||++++++ .+++|+++. ++.||.|||.|.|.+... ...|.|+|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 389999999999988865 899999999988 788999986 589999999999999765 578999999999988
Q ss_pred CCCeeEEEEEeCccccccc
Q 019768 253 ADDIMGEAEIDIQPLLTSA 271 (336)
Q Consensus 253 ~dd~iG~~~i~l~~l~~~~ 271 (336)
.+++||.+.++|.++....
T Consensus 81 ~~~~lG~~~i~l~~l~~~~ 99 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGA 99 (125)
T ss_pred CCCcEEEEEEEHHHhhccc
Confidence 9999999999999997543
No 75
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.68 E-value=2.6e-16 Score=133.52 Aligned_cols=91 Identities=29% Similarity=0.430 Sum_probs=80.1
Q ss_pred EEEEEEEEEEeeeecccCCCC-CCCcEEEEEE-----CCeEEEeeeeCCCCCceeeceeeecccC----CCCceEEEEEe
Q 019768 178 FIGLLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFD 247 (336)
Q Consensus 178 ~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l-----~~~~~rT~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~V~d 247 (336)
..|.|.|+|++|++|+..+.. .+||||++++ +..+++|++++++.||+|||.|.|.+.. ....|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 578899999999999998866 8999999988 2357899999999999999999998532 23579999999
Q ss_pred cCCCCCCCeeEEEEEeCcccc
Q 019768 248 HDTFSADDIMGEAEIDIQPLL 268 (336)
Q Consensus 248 ~~~~~~dd~iG~~~i~l~~l~ 268 (336)
++.++++++||++.+++.++.
T Consensus 105 ~d~~~~d~~lG~v~i~l~~~~ 125 (162)
T cd04020 105 HDKLSSNDFLGGVRLGLGTGK 125 (162)
T ss_pred CCCCCCCceEEEEEEeCCccc
Confidence 999999999999999999875
No 76
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.67 E-value=4.5e-16 Score=126.28 Aligned_cols=100 Identities=22% Similarity=0.370 Sum_probs=84.0
Q ss_pred EEEEEEEEEeeeecccCCCC-CCCcEEEEEE---CCeEEEeeeeCCCCCceeeceeeec-ccC---CCCceEEEEEecCC
Q 019768 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRL---GQQTVQTTIVKSNLNPVWNEELMLS-VPQ---EYGPVKLEVFDHDT 250 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l---~~~~~rT~~~~~t~nP~W~e~f~f~-v~~---~~~~L~v~V~d~~~ 250 (336)
.+.|.|+|++|+||+..+.. ..||||++.+ ..++++|+++++ .||+|||+|.|+ +.. ....|.|+|||++.
T Consensus 15 ~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~ 93 (124)
T cd08389 15 ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVER 93 (124)
T ss_pred CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCC
Confidence 47899999999999998876 7899999877 235679999888 999999999998 654 45679999999999
Q ss_pred CCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeec
Q 019768 251 FSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKS 291 (336)
Q Consensus 251 ~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l 291 (336)
++++++||++.|+|.++.. +.....||+|
T Consensus 94 ~~~~~~lG~~~i~L~~l~~------------~~~~~~w~~L 122 (124)
T cd08389 94 MRKERLIGEKVVPLSQLNL------------EGETTVWLTL 122 (124)
T ss_pred cccCceEEEEEEeccccCC------------CCCceEEEeC
Confidence 9999999999999999843 2346678875
No 77
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.67 E-value=5.4e-16 Score=123.34 Aligned_cols=98 Identities=22% Similarity=0.411 Sum_probs=82.2
Q ss_pred CCCcEEEEEECCe-EEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCCCCCCCeeEEEEEeCcccccccccCCC
Q 019768 199 SSDPYVVLRLGQQ-TVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGD 276 (336)
Q Consensus 199 ~~dPyv~i~l~~~-~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~~~dd~iG~~~i~l~~l~~~~~~~~~ 276 (336)
.+||||++.++++ ..+|++++++.||.|||.|.|.+.+ ....|.|+|||++.+ ++++||.+.++|.++...
T Consensus 12 ~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~------ 84 (111)
T cd04052 12 LLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDA------ 84 (111)
T ss_pred CCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhh------
Confidence 6899999999875 5799999999999999999999876 346799999999998 899999999999998532
Q ss_pred CCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEEEeC
Q 019768 277 PEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPL 334 (336)
Q Consensus 277 ~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~~ 334 (336)
+.....||+| .+...|+|+++++|.|+
T Consensus 85 -----~~~~~~w~~L--------------------------~~~~~G~i~~~~~~~p~ 111 (111)
T cd04052 85 -----TSVGQQWFPL--------------------------SGNGQGRIRISALWKPV 111 (111)
T ss_pred -----hhccceeEEC--------------------------CCCCCCEEEEEEEEecC
Confidence 1224678863 33568999999999985
No 78
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.67 E-value=1.6e-16 Score=130.85 Aligned_cols=91 Identities=29% Similarity=0.451 Sum_probs=78.7
Q ss_pred eEEEEEEEEEEEeeeecccCCC---CCCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccC---CCCceEEE
Q 019768 176 VEFIGLLKVKVVKGINLAIRDM---MSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLE 244 (336)
Q Consensus 176 ~~~~g~L~V~v~~a~~L~~~~~---~~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~ 244 (336)
....+.|+|.|++|+||...+. ..+||||++++.. .+++|+++++++||+|||.|.|.++. ....|.|+
T Consensus 11 ~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~ 90 (138)
T cd08407 11 LPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELE 90 (138)
T ss_pred eCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEE
Confidence 3346889999999999999873 2589999999843 25689999999999999999999976 34679999
Q ss_pred EEecCCCCCCCeeEEEEEeCcc
Q 019768 245 VFDHDTFSADDIMGEAEIDIQP 266 (336)
Q Consensus 245 V~d~~~~~~dd~iG~~~i~l~~ 266 (336)
|||++.++++++||++.+.+..
T Consensus 91 V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 91 VLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred EEeCCCCcCcceeceEEecCcC
Confidence 9999999999999999999864
No 79
>PLN03008 Phospholipase D delta
Probab=99.67 E-value=6.1e-16 Score=156.22 Aligned_cols=128 Identities=27% Similarity=0.556 Sum_probs=103.8
Q ss_pred eeEEEEEEEEEEEeeeecccCC-------------------------------------------CCCCCcEEEEEECCe
Q 019768 175 MVEFIGLLKVKVVKGINLAIRD-------------------------------------------MMSSDPYVVLRLGQQ 211 (336)
Q Consensus 175 ~~~~~g~L~V~v~~a~~L~~~~-------------------------------------------~~~~dPyv~i~l~~~ 211 (336)
..-.-|.|.|+|.+|++|+.++ ..++||||+|.++++
T Consensus 9 ~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~ 88 (868)
T PLN03008 9 VMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQA 88 (868)
T ss_pred eEEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCc
Confidence 4456799999999999987421 125699999999876
Q ss_pred E-EEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeee
Q 019768 212 T-VQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLK 290 (336)
Q Consensus 212 ~-~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~ 290 (336)
+ .||++++++.||+|||+|.|.+......|.|+|||+|.++ +++||++.|||.++.. +..++.|++
T Consensus 89 rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~------------Ge~vd~Wl~ 155 (868)
T PLN03008 89 TLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIAS------------GERISGWFP 155 (868)
T ss_pred ceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCC------------CCceEEEEE
Confidence 4 5999999999999999999999886678999999999996 5899999999999853 456789998
Q ss_pred cCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEEEeCC
Q 019768 291 SDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEWMPLD 335 (336)
Q Consensus 291 l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~~~ 335 (336)
|.+ .+|+ ....+|+|+|+|+|.|+.
T Consensus 156 Ll~-----------~~~k---------p~k~~~kl~v~lqf~pv~ 180 (868)
T PLN03008 156 VLG-----------ASGK---------PPKAETAIFIDMKFTPFD 180 (868)
T ss_pred ccc-----------cCCC---------CCCCCcEEEEEEEEEEcc
Confidence 654 1121 123568999999999985
No 80
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.66 E-value=2.3e-16 Score=129.82 Aligned_cols=88 Identities=26% Similarity=0.368 Sum_probs=76.9
Q ss_pred EEEEEEEEEeeeecccCCCC-CCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecC
Q 019768 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHD 249 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~ 249 (336)
.+.|.|.|++|+||+..+.. .+||||++++.. .+++|+++++++||+|||+|.|.++. ....|.|+|||++
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d 93 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAEST 93 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCC
Confidence 57899999999999998865 899999999922 25689999999999999999999875 4567999999999
Q ss_pred CCCCCCeeEEEEEeCcc
Q 019768 250 TFSADDIMGEAEIDIQP 266 (336)
Q Consensus 250 ~~~~dd~iG~~~i~l~~ 266 (336)
.++++++||++.+....
T Consensus 94 ~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 94 EDGKTPNVGHVIIGPAA 110 (136)
T ss_pred CCCCCCeeEEEEECCCC
Confidence 99999999999997653
No 81
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.66 E-value=8.6e-16 Score=124.18 Aligned_cols=91 Identities=26% Similarity=0.422 Sum_probs=79.7
Q ss_pred EEEEEEEEEEeeeecccCC-CC-CCCcEEEEEEC---CeEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecC
Q 019768 178 FIGLLKVKVVKGINLAIRD-MM-SSDPYVVLRLG---QQTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHD 249 (336)
Q Consensus 178 ~~g~L~V~v~~a~~L~~~~-~~-~~dPyv~i~l~---~~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~ 249 (336)
..+.|.|.|++|++|+..+ .. .+||||++++. ....+|++++++.||+|||.|.|.+.. ....|.|+|||++
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~ 91 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVD 91 (123)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECC
Confidence 4578999999999999987 34 88999999983 346799999999999999999999865 2357999999999
Q ss_pred CCCCCCeeEEEEEeCcccc
Q 019768 250 TFSADDIMGEAEIDIQPLL 268 (336)
Q Consensus 250 ~~~~dd~iG~~~i~l~~l~ 268 (336)
..+++++||++.++|.++.
T Consensus 92 ~~~~~~~iG~~~i~L~~l~ 110 (123)
T cd08390 92 RFSRHCIIGHVLFPLKDLD 110 (123)
T ss_pred cCCCCcEEEEEEEecccee
Confidence 9888999999999999985
No 82
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.66 E-value=3.5e-15 Score=124.86 Aligned_cols=124 Identities=24% Similarity=0.393 Sum_probs=88.7
Q ss_pred EEEEEEEEeeeecccCCCC-CCCcEEEEEE-----CCeEEEeeeeCCCCCceeeceeeecccCC---------CCceEEE
Q 019768 180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQE---------YGPVKLE 244 (336)
Q Consensus 180 g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l-----~~~~~rT~~~~~t~nP~W~e~f~f~v~~~---------~~~L~v~ 244 (336)
|.|+|....+-+|+..+.. ..||||++++ +.++.||+++++|+||+|||+|.|.+... ...|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4444444444446777655 7899999997 34678999999999999999999998653 3579999
Q ss_pred EEecCCC-CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccc
Q 019768 245 VFDHDTF-SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESG 323 (336)
Q Consensus 245 V~d~~~~-~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G 323 (336)
|||++.+ .+|++||++.++|..+... ..+..|++|-++ -.-.+|++ ++.+++...-.|
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~------------~~~~~~~~L~~~-------~k~~Gg~l--~v~ir~r~p~~~ 142 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETK------------CEIHESVDLMDG-------RKATGGKL--EVKVRLREPLTG 142 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEccccccc------------CcceEEEEhhhC-------CCCcCCEE--EEEEEecCCCcc
Confidence 9999986 5799999999999998532 235568875431 12235665 455555554445
Q ss_pred e
Q 019768 324 E 324 (336)
Q Consensus 324 ~ 324 (336)
+
T Consensus 143 ~ 143 (155)
T cd08690 143 K 143 (155)
T ss_pred c
Confidence 4
No 83
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.65 E-value=4.2e-17 Score=151.76 Aligned_cols=115 Identities=30% Similarity=0.466 Sum_probs=99.8
Q ss_pred EEEEEEEEeeeecccCCCC-CCCcEEEEEE-----CCeEEEeeeeCCCCCceeeceeeecccC--CCCceEEEEEecCCC
Q 019768 180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEVFDHDTF 251 (336)
Q Consensus 180 g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l-----~~~~~rT~~~~~t~nP~W~e~f~f~v~~--~~~~L~v~V~d~~~~ 251 (336)
..|+|.|.+|+||.++|.+ .+||||++.+ +..+++|++++.++||+|||+|.|.+.+ ....|.|+|||||..
T Consensus 180 ~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT 259 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT 259 (683)
T ss_pred ceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccccc
Confidence 5689999999999999998 9999999999 2356799999999999999999999976 456799999999999
Q ss_pred CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecC
Q 019768 252 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDG 307 (336)
Q Consensus 252 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g 307 (336)
+++||+|...+.+++|.. ..+++||.|..+...+..+++..++
T Consensus 260 sRNDFMGslSFgisEl~K-------------~p~~GWyKlLsqeEGEyyNvp~~~~ 302 (683)
T KOG0696|consen 260 SRNDFMGSLSFGISELQK-------------APVDGWYKLLSQEEGEYYNVPVPDE 302 (683)
T ss_pred ccccccceecccHHHHhh-------------cchhhHHHHhhhhcCceeccCCCCc
Confidence 999999999999999863 3478899988888777777776643
No 84
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.65 E-value=6.7e-16 Score=127.42 Aligned_cols=105 Identities=23% Similarity=0.385 Sum_probs=88.1
Q ss_pred EEEEEEeeeecccCCCCCCCcEEEEEEC----CeEEEeeeeCCCCCceeeceeeecccCC----------------CCce
Q 019768 182 LKVKVVKGINLAIRDMMSSDPYVVLRLG----QQTVQTTIVKSNLNPVWNEELMLSVPQE----------------YGPV 241 (336)
Q Consensus 182 L~V~v~~a~~L~~~~~~~~dPyv~i~l~----~~~~rT~~~~~t~nP~W~e~f~f~v~~~----------------~~~L 241 (336)
|+|.|++|++|+......+||||+++++ ...++|++++++.+|.|+|.|.|.+... ...|
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 5799999999998833389999999997 6788999999999999999999998653 3579
Q ss_pred EEEEEecCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCccccc
Q 019768 242 KLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLE 298 (336)
Q Consensus 242 ~v~V~d~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~ 298 (336)
.|+|||++.++++++||++.++|.++.. ......||+|..+..+.
T Consensus 81 ~i~V~d~~~~~~~~~IG~~~i~l~~l~~------------~~~~~~W~~L~~~~~~~ 125 (137)
T cd08675 81 RVELWHASMVSGDDFLGEVRIPLQGLQQ------------AGSHQAWYFLQPREAPG 125 (137)
T ss_pred EEEEEcCCcCcCCcEEEEEEEehhhccC------------CCcccceEecCCcCCCC
Confidence 9999999998899999999999999852 22457899987755433
No 85
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.65 E-value=1.4e-15 Score=121.65 Aligned_cols=112 Identities=21% Similarity=0.419 Sum_probs=84.7
Q ss_pred EEEEEEeeeecccCCCCCCCcEEEEEECCeE-EEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCCCCCCCee
Q 019768 182 LKVKVVKGINLAIRDMMSSDPYVVLRLGQQT-VQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTFSADDIM 257 (336)
Q Consensus 182 L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~~-~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~~~dd~i 257 (336)
|+|+|++|++|+.. +.+||||++++++.. .+|+++++ .||.|||+|.|.+.. ....|.|.+||.+....+.++
T Consensus 2 L~v~vi~a~~l~~~--~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~ 78 (117)
T cd08383 2 LRLRILEAKNLPSK--GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVI 78 (117)
T ss_pred eEEEEEEecCCCcC--CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEE
Confidence 78999999999987 578999999998754 79999999 999999999999976 234678888998876666677
Q ss_pred EEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEEEE
Q 019768 258 GEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELELEW 331 (336)
Q Consensus 258 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~ 331 (336)
|.+.+ ..+.. +...+.||+|.... ......|+|+|++.|
T Consensus 79 g~v~l--~~~~~------------~~~~~~w~~L~~~~---------------------~~~~~~G~l~l~~~~ 117 (117)
T cd08383 79 GKVAL--SKLDL------------GQGKDEWFPLTPVD---------------------PDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEe--cCcCC------------CCcceeEEECccCC---------------------CCCCcCceEEEEEEC
Confidence 76554 44321 33467899865411 012357899998876
No 86
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.65 E-value=8.3e-16 Score=128.71 Aligned_cols=88 Identities=34% Similarity=0.565 Sum_probs=77.6
Q ss_pred EEEEEEEEEEEeeeecccCCCC-CCCcEEEEEECC-----------------------------eEEEeeeeCCCCCcee
Q 019768 177 EFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----------------------------QTVQTTIVKSNLNPVW 226 (336)
Q Consensus 177 ~~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-----------------------------~~~rT~~~~~t~nP~W 226 (336)
...+.|.|+|++|++|...+.. .+||||++.+.. ..++|+++.+++||.|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 3578999999999999998876 899999999853 2368999999999999
Q ss_pred eceeeecccC-CCCceEEEEEecCCCCCCCeeEEEEEeCcccc
Q 019768 227 NEELMLSVPQ-EYGPVKLEVFDHDTFSADDIMGEAEIDIQPLL 268 (336)
Q Consensus 227 ~e~f~f~v~~-~~~~L~v~V~d~~~~~~dd~iG~~~i~l~~l~ 268 (336)
||.|.|.+.. ....|.|+|||++ +++||++.+++.++.
T Consensus 105 nE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~ 143 (153)
T cd08676 105 NETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLP 143 (153)
T ss_pred ccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhC
Confidence 9999999875 4578999999987 899999999999985
No 87
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.64 E-value=5.4e-15 Score=121.69 Aligned_cols=102 Identities=25% Similarity=0.371 Sum_probs=82.0
Q ss_pred EEEEEEEeeeecccCCCC-CCCcEEEEEECC-------------eEEEeeeeCCCCCcee-eceeeecccCCCCceEEEE
Q 019768 181 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-------------QTVQTTIVKSNLNPVW-NEELMLSVPQEYGPVKLEV 245 (336)
Q Consensus 181 ~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-------------~~~rT~~~~~t~nP~W-~e~f~f~v~~~~~~L~v~V 245 (336)
+++|.+++|++|+ .+.. .+||||++.+.. +.++|+++++++||+| ||.|.|.+.. .+.|.|+|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V 79 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEV 79 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEE
Confidence 4689999999998 4544 899999999932 3689999999999999 9999999864 46899999
Q ss_pred EecCCCCC---CCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768 246 FDHDTFSA---DDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 246 ~d~~~~~~---dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~ 293 (336)
||++..++ +++||++.+++.++.... .......||++..
T Consensus 80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~---------~~~~~~~~~~l~k 121 (137)
T cd08691 80 KDKFAKSRPIIRRFLGKLSIPVQRLLERH---------AIGDQELSYTLGR 121 (137)
T ss_pred EecCCCCCccCCceEEEEEEEHHHhcccc---------cCCceEEEEECCc
Confidence 99875443 799999999999997542 2223667887654
No 88
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.64 E-value=5.8e-16 Score=127.61 Aligned_cols=92 Identities=33% Similarity=0.445 Sum_probs=79.2
Q ss_pred eeEEEEEEEEEEEeeeecccCCCC-CCCcEEEEEEC--C---eEEEeeeeCCCCCceeeceeeecccCC---CCceEEEE
Q 019768 175 MVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG--Q---QTVQTTIVKSNLNPVWNEELMLSVPQE---YGPVKLEV 245 (336)
Q Consensus 175 ~~~~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~--~---~~~rT~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~V 245 (336)
.....|.|.|.|++|++|+..+.. .+||||++++. . ..++|+++++++||.|||.|.|.+... ...|.|+|
T Consensus 10 y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v 89 (136)
T cd08402 10 YVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTV 89 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 344568999999999999988876 89999999984 2 356899999999999999999998652 34789999
Q ss_pred EecCCCCCCCeeEEEEEeCcc
Q 019768 246 FDHDTFSADDIMGEAEIDIQP 266 (336)
Q Consensus 246 ~d~~~~~~dd~iG~~~i~l~~ 266 (336)
||++.+++|++||++.+++..
T Consensus 90 ~d~~~~~~~~~iG~~~i~~~~ 110 (136)
T cd08402 90 LDYDRIGKNDPIGKVVLGCNA 110 (136)
T ss_pred EeCCCCCCCceeEEEEECCcc
Confidence 999999999999999999865
No 89
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.64 E-value=8.9e-16 Score=126.07 Aligned_cols=91 Identities=30% Similarity=0.394 Sum_probs=80.4
Q ss_pred EEEEEEEEEeeeecccCCCC-CCCcEEEEEEC-------CeEEEeeeeCCCCCceeeceeeecccC-----CCCceEEEE
Q 019768 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG-------QQTVQTTIVKSNLNPVWNEELMLSVPQ-----EYGPVKLEV 245 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~-------~~~~rT~~~~~t~nP~W~e~f~f~v~~-----~~~~L~v~V 245 (336)
.+.|+|.|++|++|+..+.. .+||||++++. ...++|+++++++||+|||.|.|.+.. ....|.|+|
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V 94 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTV 94 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEE
Confidence 46799999999999988775 89999999984 346899999999999999999999864 245799999
Q ss_pred EecCCCCCCCeeEEEEEeCccccc
Q 019768 246 FDHDTFSADDIMGEAEIDIQPLLT 269 (336)
Q Consensus 246 ~d~~~~~~dd~iG~~~i~l~~l~~ 269 (336)
||++.++++++||++.++|.++..
T Consensus 95 ~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 95 KDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EecCCCCCCcEeEEEEEeHHHCCc
Confidence 999999889999999999999863
No 90
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.64 E-value=6.5e-16 Score=126.79 Aligned_cols=91 Identities=29% Similarity=0.428 Sum_probs=79.7
Q ss_pred eEEEEEEEEEEEeeeecccCCCC-CCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEE
Q 019768 176 VEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVF 246 (336)
Q Consensus 176 ~~~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~ 246 (336)
....|.|.|+|++|++|+..+.. .+||||++.+.. ...+|+++++++||+|||+|.|.+.. ....|.|+||
T Consensus 9 ~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~ 88 (133)
T cd08384 9 NTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVW 88 (133)
T ss_pred cCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEE
Confidence 34568999999999999998876 899999999842 35799999999999999999999865 2457999999
Q ss_pred ecCCCCCCCeeEEEEEeCcc
Q 019768 247 DHDTFSADDIMGEAEIDIQP 266 (336)
Q Consensus 247 d~~~~~~dd~iG~~~i~l~~ 266 (336)
|++..+++++||++.+++..
T Consensus 89 d~d~~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 89 DKDIGKSNDYIGGLQLGINA 108 (133)
T ss_pred eCCCCCCccEEEEEEEecCC
Confidence 99998899999999999975
No 91
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.64 E-value=1.6e-15 Score=124.11 Aligned_cols=105 Identities=30% Similarity=0.473 Sum_probs=88.8
Q ss_pred EEEEEEEEeeeecccCCCC-CCCcEEEEEEC-----CeEEEeeeeCCCCCceeeceeeecccCC--CCceEEEEEecCCC
Q 019768 180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQE--YGPVKLEVFDHDTF 251 (336)
Q Consensus 180 g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~-----~~~~rT~~~~~t~nP~W~e~f~f~v~~~--~~~L~v~V~d~~~~ 251 (336)
+.|+|+|++|++|+..+.. ..||||++.+. ...++|++++++.+|.|||+|.|.+... ...|.|+|||++.+
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 7899999999999987766 78999999995 2578999999999999999999998653 46799999999998
Q ss_pred CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccc
Q 019768 252 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALL 297 (336)
Q Consensus 252 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~ 297 (336)
+.+++||++.++|.++... ....||+|.++...
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-------------~~~~w~~L~~~~~~ 125 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-------------PVDGWYKLLNQEEG 125 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-------------ccCceEECcCcccc
Confidence 8999999999999998521 45679987654443
No 92
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.63 E-value=7.9e-16 Score=126.84 Aligned_cols=88 Identities=30% Similarity=0.486 Sum_probs=77.5
Q ss_pred EEEEEEEEEeeeecccCCCC-CCCcEEEEEEC--C---eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecC
Q 019768 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG--Q---QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHD 249 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~--~---~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~ 249 (336)
.+.|.|+|++|++|+..+.. .+||||++++. + .+++|++++++.||.|+|+|.|.+.. ....|.|+|||++
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d 93 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSD 93 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECC
Confidence 56899999999999998876 89999999983 2 25689999999999999999999865 3456889999999
Q ss_pred CCCCCCeeEEEEEeCcc
Q 019768 250 TFSADDIMGEAEIDIQP 266 (336)
Q Consensus 250 ~~~~dd~iG~~~i~l~~ 266 (336)
.++++++||++.+++..
T Consensus 94 ~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 94 RVTKNEVIGRLVLGPKA 110 (136)
T ss_pred CCCCCccEEEEEECCcC
Confidence 99999999999999987
No 93
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.63 E-value=8.6e-16 Score=125.20 Aligned_cols=94 Identities=15% Similarity=0.270 Sum_probs=78.6
Q ss_pred ceeEEEEEEEEEEEeeeecccCCCC-CCCcEEEEEE---CC--eEEEeeeeCCCC-CceeeceeeecccCC--CCceEEE
Q 019768 174 GMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRL---GQ--QTVQTTIVKSNL-NPVWNEELMLSVPQE--YGPVKLE 244 (336)
Q Consensus 174 g~~~~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l---~~--~~~rT~~~~~t~-nP~W~e~f~f~v~~~--~~~L~v~ 244 (336)
......|.|+|.|++|+||+..... ..||||++++ +. .+++|+++++++ +|+|||.|.|+++.. .-.|.|+
T Consensus 8 ~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~ 87 (135)
T cd08692 8 CFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIK 87 (135)
T ss_pred eecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEE
Confidence 4566789999999999999987444 6799999998 22 467999999995 699999999999762 3457889
Q ss_pred EEecCCCCCCCeeEEEEEeCccc
Q 019768 245 VFDHDTFSADDIMGEAEIDIQPL 267 (336)
Q Consensus 245 V~d~~~~~~dd~iG~~~i~l~~l 267 (336)
|||++..+++++||++.+..+..
T Consensus 88 v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 88 LYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred EEeCCCCcCCceEEEEEECCccC
Confidence 99999999999999999998763
No 94
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.62 E-value=9.3e-16 Score=167.63 Aligned_cols=121 Identities=21% Similarity=0.406 Sum_probs=100.6
Q ss_pred eeEEEEEEEEEEEeeeecccCCCCCCCcEEEEEECCe-EEEeeeeCCCCCceeeceeeecccC--CCCceEEEEEecCCC
Q 019768 175 MVEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQ-TVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEVFDHDTF 251 (336)
Q Consensus 175 ~~~~~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~-~~rT~~~~~t~nP~W~e~f~f~v~~--~~~~L~v~V~d~~~~ 251 (336)
|....|.|+|+|++|+||. .++..+||||++.++++ ++||++++++.||+|||.|+|.+.. ....|.|+|||+|.+
T Consensus 1975 ~~~~~G~L~V~V~~a~nl~-~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f 2053 (2102)
T PLN03200 1975 LQCLPGSLTVTIKRGNNLK-QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTF 2053 (2102)
T ss_pred HhhCCcceEEEEeeccccc-cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCcc
Confidence 4456799999999999998 55568999999999966 7899999999999999999977655 447899999999999
Q ss_pred CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccce---EEEE
Q 019768 252 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGE---LELE 328 (336)
Q Consensus 252 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~---i~l~ 328 (336)
+ ++.+|.+.|+|.++.. +..+.+||+|.+ ++.+.|+ |+++
T Consensus 2054 ~-kd~~G~~~i~l~~vv~------------~~~~~~~~~L~~------------------------~~~k~G~~~~~~~e 2096 (2102)
T PLN03200 2054 G-KSSLGKVTIQIDRVVM------------EGTYSGEYSLNP------------------------ESNKDGSSRTLEIE 2096 (2102)
T ss_pred C-CCCCceEEEEHHHHhc------------CceeeeeeecCc------------------------ccccCCCcceEEEE
Confidence 5 4599999999999863 345667876432 4467898 9999
Q ss_pred EEEEe
Q 019768 329 LEWMP 333 (336)
Q Consensus 329 l~~~~ 333 (336)
|+|-+
T Consensus 2097 ~~w~~ 2101 (2102)
T PLN03200 2097 FQWSN 2101 (2102)
T ss_pred EEecC
Confidence 99964
No 95
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.62 E-value=3.1e-15 Score=121.38 Aligned_cols=88 Identities=32% Similarity=0.561 Sum_probs=78.5
Q ss_pred EEEEEEEeeeecccCCCC-CCCcEEEEEECCeE--EEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCCCCCCCe
Q 019768 181 LLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQT--VQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDI 256 (336)
Q Consensus 181 ~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~--~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~~~dd~ 256 (336)
+|+|.|++|++|+..+.. .+||||++++++.. .+|+++++++||.|||.|.|.+.. ....|.|+|||++.+++|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 478999999999998876 89999999998765 478889999999999999998754 45689999999999999999
Q ss_pred eEEEEEeCcccc
Q 019768 257 MGEAEIDIQPLL 268 (336)
Q Consensus 257 iG~~~i~l~~l~ 268 (336)
||++.++|.+..
T Consensus 81 iG~~~i~l~~~~ 92 (124)
T cd04037 81 IGETVIDLEDRF 92 (124)
T ss_pred eEEEEEeecccc
Confidence 999999998875
No 96
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.62 E-value=1.3e-15 Score=125.51 Aligned_cols=90 Identities=30% Similarity=0.504 Sum_probs=78.2
Q ss_pred EEEEEEEEEEeeeecccCCCC-CCCcEEEEEEC--C---eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEec
Q 019768 178 FIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG--Q---QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDH 248 (336)
Q Consensus 178 ~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~--~---~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~ 248 (336)
..|.|.|+|++|++|+..+.. .+||||++++. + .+++|++++++.||.|||.|.|.++. ....|.|+|||+
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~ 92 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDK 92 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEEC
Confidence 357899999999999988766 89999999982 2 35689999999999999999999864 245799999999
Q ss_pred CCCCCCCeeEEEEEeCccc
Q 019768 249 DTFSADDIMGEAEIDIQPL 267 (336)
Q Consensus 249 ~~~~~dd~iG~~~i~l~~l 267 (336)
+.++++++||++.+++.+.
T Consensus 93 ~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 93 DRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred CCCCCCcEeEEEEECCccC
Confidence 9999999999999999875
No 97
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.62 E-value=1.2e-14 Score=118.16 Aligned_cols=89 Identities=28% Similarity=0.503 Sum_probs=77.2
Q ss_pred EEEEEEEeeeecccCCCCCCCcEEEEEECCe-EEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCeeEE
Q 019768 181 LLKVKVVKGINLAIRDMMSSDPYVVLRLGQQ-TVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGE 259 (336)
Q Consensus 181 ~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~-~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~iG~ 259 (336)
.|.|+|++|+.+.......+||||+++++++ ..+|++++++.+|.|||.|.|.+.. ...|.|+|||++..+.+++||+
T Consensus 3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~iG~ 81 (125)
T cd04021 3 QLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLLGE 81 (125)
T ss_pred eEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEEEE
Confidence 5899999998444443338999999999877 7899999999999999999999864 4689999999999999999999
Q ss_pred EEEeCcccccc
Q 019768 260 AEIDIQPLLTS 270 (336)
Q Consensus 260 ~~i~l~~l~~~ 270 (336)
+.++|.++...
T Consensus 82 ~~i~l~~l~~~ 92 (125)
T cd04021 82 ASLDLSDILKN 92 (125)
T ss_pred EEEEHHHhHhh
Confidence 99999998754
No 98
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.61 E-value=6.2e-15 Score=117.72 Aligned_cols=87 Identities=39% Similarity=0.616 Sum_probs=77.9
Q ss_pred EEEEEEeeeecccCCCC-CCCcEEEEEECC-eEEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCCCCCCCeeE
Q 019768 182 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-QTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDIMG 258 (336)
Q Consensus 182 L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~~~dd~iG 258 (336)
|+|.|++|++|+..+.. .+||||++.+++ ..++|+++.++.+|.|||+|.|.+.. ....|.|+|||++..+++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 57899999999988765 789999999965 45799999999999999999999876 4577999999999988999999
Q ss_pred EEEEeCcccc
Q 019768 259 EAEIDIQPLL 268 (336)
Q Consensus 259 ~~~i~l~~l~ 268 (336)
++.+++.++.
T Consensus 81 ~~~~~l~~l~ 90 (115)
T cd04040 81 SAYIDLSDLE 90 (115)
T ss_pred EEEEEHHHcC
Confidence 9999999985
No 99
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.61 E-value=2e-15 Score=124.70 Aligned_cols=91 Identities=22% Similarity=0.387 Sum_probs=79.3
Q ss_pred EEEEEEEEEEEeeeecccCCCC-CCCcEEEEEECC------eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEE
Q 019768 177 EFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ------QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVF 246 (336)
Q Consensus 177 ~~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~------~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~ 246 (336)
...+.|.|+|++|+||+..+.. .+||||++++.. .+++|++++++.||+|||+|.|.++. ....|.|+||
T Consensus 12 ~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~ 91 (138)
T cd08408 12 ALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVY 91 (138)
T ss_pred CCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEE
Confidence 3468899999999999998876 889999999832 24699999999999999999999975 4468999999
Q ss_pred ecCCCCCCCeeEEEEEeCccc
Q 019768 247 DHDTFSADDIMGEAEIDIQPL 267 (336)
Q Consensus 247 d~~~~~~dd~iG~~~i~l~~l 267 (336)
|++.++++++||++.+++...
T Consensus 92 ~~~~~~~~~~iG~v~l~~~~~ 112 (138)
T cd08408 92 NKRKMKRKEMIGWFSLGLNSS 112 (138)
T ss_pred ECCCCCCCcEEEEEEECCcCC
Confidence 999999999999999988654
No 100
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.60 E-value=3.2e-15 Score=122.84 Aligned_cols=89 Identities=29% Similarity=0.496 Sum_probs=77.1
Q ss_pred EEEEEEEEEEEeeeecccCCCC-CCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEe
Q 019768 177 EFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFD 247 (336)
Q Consensus 177 ~~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d 247 (336)
...|.|+|+|++|++|+..+.. .+||||++++.. ..++|+++++++||.|+|.|.|.+.. ....|.|+|||
T Consensus 11 ~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d 90 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVD 90 (134)
T ss_pred CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence 3468899999999999998876 899999999832 35689999999999999999999864 22468999999
Q ss_pred cCCCCCCCeeEEEEEeCc
Q 019768 248 HDTFSADDIMGEAEIDIQ 265 (336)
Q Consensus 248 ~~~~~~dd~iG~~~i~l~ 265 (336)
++.++++++||.+.+++.
T Consensus 91 ~~~~~~~~~IG~~~l~~~ 108 (134)
T cd08403 91 YDRVGHNELIGVCRVGPN 108 (134)
T ss_pred CCCCCCCceeEEEEECCC
Confidence 999999999999999876
No 101
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1.5e-14 Score=139.99 Aligned_cols=103 Identities=30% Similarity=0.484 Sum_probs=87.3
Q ss_pred EEEEEEEEEeeeecccCCCC-CCCcEEEEEECC---eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCCC
Q 019768 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ---QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTF 251 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~---~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~ 251 (336)
...|+|+|++|++|+..+.. .+||||++++.. .+.+|++.++++||+|||+|.|.|.. ....|.+.|||+|+|
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drf 245 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRF 245 (421)
T ss_pred CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCc
Confidence 37799999999999999954 799999999943 56799999999999999999999765 457899999999999
Q ss_pred CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768 252 SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 252 ~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~ 293 (336)
++|++||++.++|..+... .....|+++..
T Consensus 246 sr~~~iGev~~~l~~~~~~------------~~~~~w~~l~~ 275 (421)
T KOG1028|consen 246 SRHDFIGEVILPLGEVDLL------------STTLFWKDLQP 275 (421)
T ss_pred ccccEEEEEEecCcccccc------------ccceeeecccc
Confidence 9999999999998887432 12556887544
No 102
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.56 E-value=5.7e-14 Score=114.14 Aligned_cols=87 Identities=32% Similarity=0.555 Sum_probs=75.2
Q ss_pred EEEEEEEeeeecccCC--CC-CCCcEEEEEE------CCeEEEeeeeCCCC-CceeeceeeecccC-CCCceEEEEEecC
Q 019768 181 LLKVKVVKGINLAIRD--MM-SSDPYVVLRL------GQQTVQTTIVKSNL-NPVWNEELMLSVPQ-EYGPVKLEVFDHD 249 (336)
Q Consensus 181 ~L~V~v~~a~~L~~~~--~~-~~dPyv~i~l------~~~~~rT~~~~~t~-nP~W~e~f~f~v~~-~~~~L~v~V~d~~ 249 (336)
.|+|+|++|++|+..+ .. ..||||++++ .....+|+++.++. ||.|+|+|.|.+.. ....|.|+|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 5899999999999887 23 8899999999 34568999988875 99999999999865 3356899999999
Q ss_pred CCCCCCeeEEEEEeCcccc
Q 019768 250 TFSADDIMGEAEIDIQPLL 268 (336)
Q Consensus 250 ~~~~dd~iG~~~i~l~~l~ 268 (336)
.. ++++||.+.++|.++.
T Consensus 83 ~~-~~~~iG~~~~~l~~l~ 100 (128)
T cd00275 83 SG-DDDFLGQACLPLDSLR 100 (128)
T ss_pred CC-CCcEeEEEEEEhHHhc
Confidence 88 8999999999999884
No 103
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.56 E-value=1.5e-14 Score=119.15 Aligned_cols=88 Identities=30% Similarity=0.524 Sum_probs=75.2
Q ss_pred EEEEEEEEEEEeeeecccCCCC-CCCcEEEEEEC--C---eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEe
Q 019768 177 EFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG--Q---QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFD 247 (336)
Q Consensus 177 ~~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~--~---~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d 247 (336)
...|.|+|.|++|++|+..+.. .+||||++++. . .+++|++++++.||.|||+|.|.+.. ....|.|+|||
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d 90 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYG 90 (135)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEe
Confidence 3458899999999999998876 89999999972 2 35789999999999999999999864 23468999999
Q ss_pred cCCCCCCCeeEEEEEeC
Q 019768 248 HDTFSADDIMGEAEIDI 264 (336)
Q Consensus 248 ~~~~~~dd~iG~~~i~l 264 (336)
++..+++++||++.+..
T Consensus 91 ~d~~~~~~~iG~~~l~~ 107 (135)
T cd08410 91 HNVKSSNDFIGRIVIGQ 107 (135)
T ss_pred CCCCCCCcEEEEEEEcC
Confidence 99999999999987654
No 104
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.56 E-value=1e-14 Score=120.32 Aligned_cols=89 Identities=20% Similarity=0.306 Sum_probs=76.8
Q ss_pred EEEEEEEEEeeeecccCCCCCCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCC
Q 019768 179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDT 250 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~ 250 (336)
.+.|.|.|++|+||+..+...+||||++.+.. .+++|++++++.||+|||.|.|.++. ....|.|+|||++.
T Consensus 14 ~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~ 93 (137)
T cd08409 14 LNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGG 93 (137)
T ss_pred CCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCC
Confidence 57899999999999988844899999999832 35689999999999999999999965 34679999999999
Q ss_pred CCCCCeeEEEEEeCccc
Q 019768 251 FSADDIMGEAEIDIQPL 267 (336)
Q Consensus 251 ~~~dd~iG~~~i~l~~l 267 (336)
++++++||++.+.....
T Consensus 94 ~~~~~~lG~v~ig~~~~ 110 (137)
T cd08409 94 VRKSKLLGRVVLGPFMY 110 (137)
T ss_pred CCCcceEEEEEECCccc
Confidence 99999999999986443
No 105
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.56 E-value=2.2e-14 Score=113.92 Aligned_cols=80 Identities=24% Similarity=0.498 Sum_probs=69.1
Q ss_pred EEEEEEeeeecccCCCCCCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEec-------C
Q 019768 182 LKVKVVKGINLAIRDMMSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDH-------D 249 (336)
Q Consensus 182 L~V~v~~a~~L~~~~~~~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~-------~ 249 (336)
|.|+|.+|++|+. .+||||++.++. ...+|+++++|+||+|||+|.|.+.. ...|.+.|||+ |
T Consensus 1 L~V~V~~A~~L~~----~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~d 75 (118)
T cd08686 1 LNVIVHSAQGFKQ----SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKLD 75 (118)
T ss_pred CEEEEEeCCCCCC----CCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEccccccccc
Confidence 6899999999963 469999998843 45799999999999999999999975 67999999998 5
Q ss_pred CCCCCCeeEEEEEeCcc
Q 019768 250 TFSADDIMGEAEIDIQP 266 (336)
Q Consensus 250 ~~~~dd~iG~~~i~l~~ 266 (336)
..+.|+++|.+.+.|+.
T Consensus 76 ~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 76 GEGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccCcccEEEEEEEEECH
Confidence 66789999998888754
No 106
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.55 E-value=2.2e-14 Score=115.65 Aligned_cols=85 Identities=29% Similarity=0.491 Sum_probs=74.0
Q ss_pred EEEeeeecccCCCC-CCCcEEEEEECCe-------EEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCC----C
Q 019768 185 KVVKGINLAIRDMM-SSDPYVVLRLGQQ-------TVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDT----F 251 (336)
Q Consensus 185 ~v~~a~~L~~~~~~-~~dPyv~i~l~~~-------~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~----~ 251 (336)
..++|++|+..+.. .+||||++++... .++|+++++++||+|+|+|.|.+.. ....|.|+|||++. +
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 45889999988876 8999999999554 3799999999999999999998643 45679999999997 7
Q ss_pred CCCCeeEEEEEeCccccc
Q 019768 252 SADDIMGEAEIDIQPLLT 269 (336)
Q Consensus 252 ~~dd~iG~~~i~l~~l~~ 269 (336)
+++++||++.+++.+++.
T Consensus 85 ~~~d~iG~~~i~l~~l~~ 102 (120)
T cd04048 85 SDHDFLGEAECTLGEIVS 102 (120)
T ss_pred CCCcEEEEEEEEHHHHhc
Confidence 899999999999999964
No 107
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.54 E-value=1.4e-14 Score=118.64 Aligned_cols=88 Identities=33% Similarity=0.487 Sum_probs=78.2
Q ss_pred EEEEEEEEEeeeecccCCCC-CCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccCC---CCceEEEEEecC
Q 019768 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQE---YGPVKLEVFDHD 249 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~~---~~~L~v~V~d~~ 249 (336)
.+.|.|.|++|++|+..+.. ..||||++++.. ..++|+++.++.+|.|||+|.|.+... ...|.|+|||++
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~ 92 (134)
T cd00276 13 AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKD 92 (134)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecC
Confidence 47899999999999988765 889999999843 256999999999999999999998763 468999999999
Q ss_pred CCCCCCeeEEEEEeCcc
Q 019768 250 TFSADDIMGEAEIDIQP 266 (336)
Q Consensus 250 ~~~~dd~iG~~~i~l~~ 266 (336)
.++++++||.+.+++.+
T Consensus 93 ~~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 93 SVGRNEVIGQVVLGPDS 109 (134)
T ss_pred CCCCCceeEEEEECCCC
Confidence 98899999999999988
No 108
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.52 E-value=8.2e-14 Score=112.69 Aligned_cols=92 Identities=29% Similarity=0.466 Sum_probs=78.5
Q ss_pred EEEEEEEEEEeeeecccCCCC-CCCcEEEEEEC-----CeEEEeeeeCCCCCceeeceeeec-ccC---CCCceEEEEEe
Q 019768 178 FIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLS-VPQ---EYGPVKLEVFD 247 (336)
Q Consensus 178 ~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~-----~~~~rT~~~~~t~nP~W~e~f~f~-v~~---~~~~L~v~V~d 247 (336)
..+.|+|+|++|++|+..+.. .+||||++.+. ....+|++++++.||.|||.|.|. +.. ....|.|+|||
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d 92 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLD 92 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEE
Confidence 357899999999999988776 88999999982 246899999999999999999996 332 24679999999
Q ss_pred cCCCCCCCeeEEEEEeCcccccc
Q 019768 248 HDTFSADDIMGEAEIDIQPLLTS 270 (336)
Q Consensus 248 ~~~~~~dd~iG~~~i~l~~l~~~ 270 (336)
++.+ .+++||.+.++|.++..+
T Consensus 93 ~~~~-~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 93 EDRF-GNDFLGETRIPLKKLKPN 114 (123)
T ss_pred cCCc-CCeeEEEEEEEcccCCCC
Confidence 9988 889999999999998643
No 109
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.49 E-value=1.1e-13 Score=109.63 Aligned_cols=85 Identities=29% Similarity=0.563 Sum_probs=72.5
Q ss_pred EEEEEeeeecccCCCC-CCCcEEEEEECC------eEEEeeeeCCCCCceeeceeeecccC-----CCCceEEEEEecCC
Q 019768 183 KVKVVKGINLAIRDMM-SSDPYVVLRLGQ------QTVQTTIVKSNLNPVWNEELMLSVPQ-----EYGPVKLEVFDHDT 250 (336)
Q Consensus 183 ~V~v~~a~~L~~~~~~-~~dPyv~i~l~~------~~~rT~~~~~t~nP~W~e~f~f~v~~-----~~~~L~v~V~d~~~ 250 (336)
.+..++|++|+..+.. .+||||++++.. ..++|+++++++||+|| .|.|.+.. ....|.|+|||++.
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 3456799999998876 899999999843 24799999999999999 68887532 25689999999999
Q ss_pred CCCCCeeEEEEEeCcccc
Q 019768 251 FSADDIMGEAEIDIQPLL 268 (336)
Q Consensus 251 ~~~dd~iG~~~i~l~~l~ 268 (336)
+++|++||++.+++.++.
T Consensus 82 ~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 82 SGKHDLIGEFETTLDELL 99 (110)
T ss_pred CCCCcEEEEEEEEHHHHh
Confidence 999999999999999986
No 110
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=9e-14 Score=134.69 Aligned_cols=130 Identities=24% Similarity=0.487 Sum_probs=108.1
Q ss_pred ccceeEEEEEEEEEEEeeeecccCCCC-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCC
Q 019768 172 DVGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDT 250 (336)
Q Consensus 172 ~~g~~~~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~ 250 (336)
..|...+...++++|+.|++|..+|.. ++||||...+++.+.||+++...+||+|||.|+|.+.+....+++.|||.|.
T Consensus 287 legsskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~ 366 (1283)
T KOG1011|consen 287 LEGSSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDN 366 (1283)
T ss_pred hccccccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcc
Confidence 367788999999999999999999987 9999999999999999999999999999999999999888899999999873
Q ss_pred C-----------CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecc
Q 019768 251 F-----------SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQN 319 (336)
Q Consensus 251 ~-----------~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~ 319 (336)
- ..|||+|++.|.+..+. ..++-||.| ...+.-...+|.+...+.+.+++
T Consensus 367 dlksklrqkl~resddflgqtvievrtls--------------gemdvwynl-----ekrtdksavsgairlhisveikg 427 (1283)
T KOG1011|consen 367 DLKSKLRQKLTRESDDFLGQTVIEVRTLS--------------GEMDVWYNL-----EKRTDKSAVSGAIRLHISVEIKG 427 (1283)
T ss_pred cHHHHHHHHhhhcccccccceeEEEEecc--------------cchhhhcch-----hhccchhhccceEEEEEEEEEcC
Confidence 2 46899999999988873 346789974 33444455567666666666554
Q ss_pred c
Q 019768 320 V 320 (336)
Q Consensus 320 ~ 320 (336)
.
T Consensus 428 e 428 (1283)
T KOG1011|consen 428 E 428 (1283)
T ss_pred c
Confidence 3
No 111
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.45 E-value=3.6e-13 Score=100.65 Aligned_cols=80 Identities=33% Similarity=0.640 Sum_probs=71.2
Q ss_pred EEEEEEeeeecccCCCC-CCCcEEEEEECC---eEEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCCCCCCCe
Q 019768 182 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQ---QTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDI 256 (336)
Q Consensus 182 L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~---~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~~~dd~ 256 (336)
|+|+|++|++|+..+.. ..|||+++.+.. ..++|+++.++.+|.|+|.|.|.+.. ....|.|+|||++..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 78999999999997765 889999999966 67999999999999999999999654 44569999999999988999
Q ss_pred eEEEE
Q 019768 257 MGEAE 261 (336)
Q Consensus 257 iG~~~ 261 (336)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 112
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.40 E-value=4.1e-13 Score=131.62 Aligned_cols=101 Identities=27% Similarity=0.438 Sum_probs=88.8
Q ss_pred EEEEEEEEeeeecccCCCC-CCCcEEEEEECCe-EEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCee
Q 019768 180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQ-TVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIM 257 (336)
Q Consensus 180 g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~-~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~i 257 (336)
..|.|.|.+|+||+..+.. ..||||.|.++.. ..||.++.+++.|-|.|+|+|.++.....|.|.|||+| +++|+.|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~I 83 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDII 83 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-ccccccc
Confidence 3589999999999999887 8999999999775 56999999999999999999999998899999999999 8999999
Q ss_pred EEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768 258 GEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 258 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~ 293 (336)
|.+.|.-++|... .-.+.||.|+.
T Consensus 84 GKvai~re~l~~~------------~~~d~W~~L~~ 107 (800)
T KOG2059|consen 84 GKVAIKREDLHMY------------PGKDTWFSLQP 107 (800)
T ss_pred ceeeeeHHHHhhC------------CCCccceeccc
Confidence 9999987777432 24678998655
No 113
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.30 E-value=1.4e-11 Score=100.44 Aligned_cols=89 Identities=27% Similarity=0.341 Sum_probs=74.9
Q ss_pred EEEEEEeeeecccCCC--C---CCCcEEEEEECC---eEEEeeeeCCCCC--ceeeceeeecccC---------------
Q 019768 182 LKVKVVKGINLAIRDM--M---SSDPYVVLRLGQ---QTVQTTIVKSNLN--PVWNEELMLSVPQ--------------- 236 (336)
Q Consensus 182 L~V~v~~a~~L~~~~~--~---~~dPyv~i~l~~---~~~rT~~~~~t~n--P~W~e~f~f~v~~--------------- 236 (336)
|+|.|.+|++++..+. . .+||||++.+.. .+++|.|+.+++| |.||++|.|++..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 7999999999665433 2 489999999954 5689999999999 9999999988643
Q ss_pred ---------CCCceEEEEEecCCCCCCCeeEEEEEeCcccccc
Q 019768 237 ---------EYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTS 270 (336)
Q Consensus 237 ---------~~~~L~v~V~d~~~~~~dd~iG~~~i~l~~l~~~ 270 (336)
....|.|+|||+|.+++|++||.+.++|..+..+
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRP 124 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccc
Confidence 1246899999999999999999999999988654
No 114
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.30 E-value=2.3e-11 Score=93.04 Aligned_cols=89 Identities=39% Similarity=0.712 Sum_probs=79.0
Q ss_pred EEEEEEeeeecccCCCC-CCCcEEEEEECCe---EEEeeeeCCCCCceeeceeeecccCC-CCceEEEEEecCCCCCCCe
Q 019768 182 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQQ---TVQTTIVKSNLNPVWNEELMLSVPQE-YGPVKLEVFDHDTFSADDI 256 (336)
Q Consensus 182 L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~---~~rT~~~~~t~nP~W~e~f~f~v~~~-~~~L~v~V~d~~~~~~dd~ 256 (336)
|.|.|++|++|...... ..+|||++.+... ..+|+++.++.+|.|+|.|.|.+... ...|.|+|||++..+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 78999999999887764 7899999999764 78999999999999999999999775 7889999999998777899
Q ss_pred eEEEEEeCcccccc
Q 019768 257 MGEAEIDIQPLLTS 270 (336)
Q Consensus 257 iG~~~i~l~~l~~~ 270 (336)
+|.+.+++.++..+
T Consensus 82 ~G~~~~~l~~~~~~ 95 (101)
T smart00239 82 IGQVTIPLSDLLLG 95 (101)
T ss_pred eEEEEEEHHHcccC
Confidence 99999999888644
No 115
>PLN02270 phospholipase D alpha
Probab=99.29 E-value=3.2e-11 Score=122.31 Aligned_cols=127 Identities=18% Similarity=0.345 Sum_probs=101.6
Q ss_pred EEEEEEEEEEEeeeecccCC-----------------C--CCCCcEEEEEECCeEE-EeeeeCCC-CCceeeceeeeccc
Q 019768 177 EFIGLLKVKVVKGINLAIRD-----------------M--MSSDPYVVLRLGQQTV-QTTIVKSN-LNPVWNEELMLSVP 235 (336)
Q Consensus 177 ~~~g~L~V~v~~a~~L~~~~-----------------~--~~~dPyv~i~l~~~~~-rT~~~~~t-~nP~W~e~f~f~v~ 235 (336)
-.-|.|.|+|.+|++|+..+ . ..+||||.+.+++.+. ||+++.+. .||+|+|.|.+++.
T Consensus 5 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~a 84 (808)
T PLN02270 5 LLHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCA 84 (808)
T ss_pred eeecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeec
Confidence 35799999999999998531 1 1569999999988765 99999884 69999999999998
Q ss_pred CCCCceEEEEEecCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEE
Q 019768 236 QEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISL 315 (336)
Q Consensus 236 ~~~~~L~v~V~d~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l 315 (336)
.....+.|.|.|.+.++. .+||.+.||+.+++. +..+++||++-+ .+|+.
T Consensus 85 h~~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~------------g~~i~~~~~~~~-----------~~~~p------ 134 (808)
T PLN02270 85 HMASNIIFTVKDDNPIGA-TLIGRAYIPVEEILD------------GEEVDRWVEILD-----------NDKNP------ 134 (808)
T ss_pred cCcceEEEEEecCCccCc-eEEEEEEEEHHHhcC------------CCccccEEeccC-----------CCCCc------
Confidence 877899999999999865 699999999999864 446899998544 23332
Q ss_pred EecccccceEEEEEEEEeCCC
Q 019768 316 KLQNVESGELELELEWMPLDQ 336 (336)
Q Consensus 316 ~l~~~~~G~i~l~l~~~~~~~ 336 (336)
....-+|+++|+|+|+.+
T Consensus 135 ---~~~~~~~~~~~~f~~~~~ 152 (808)
T PLN02270 135 ---IHGGSKIHVKLQYFEVTK 152 (808)
T ss_pred ---CCCCCEEEEEEEEEEccc
Confidence 112348999999999753
No 116
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.28 E-value=3.2e-11 Score=91.78 Aligned_cols=87 Identities=46% Similarity=0.786 Sum_probs=77.9
Q ss_pred EEEEEEeeeecccCCCC-CCCcEEEEEECC-eEEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCCCCCCCeeE
Q 019768 182 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-QTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSADDIMG 258 (336)
Q Consensus 182 L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~~~dd~iG 258 (336)
|.|.|++|++|...... ..+|||.+.+.. ...+|++..++.+|.|++.|.|.+.. ....|.|+||+.+..+.+.+||
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 57899999999875554 789999999987 88899999999999999999999987 5678999999999887789999
Q ss_pred EEEEeCcccc
Q 019768 259 EAEIDIQPLL 268 (336)
Q Consensus 259 ~~~i~l~~l~ 268 (336)
.+.+++..+.
T Consensus 81 ~~~~~l~~l~ 90 (102)
T cd00030 81 EVEIPLSELL 90 (102)
T ss_pred EEEEeHHHhh
Confidence 9999999985
No 117
>PLN02223 phosphoinositide phospholipase C
Probab=99.18 E-value=2.9e-10 Score=111.18 Aligned_cols=93 Identities=23% Similarity=0.493 Sum_probs=75.9
Q ss_pred EEEEEEEEEeeeecccC-----CCC-CCCcEEEEEEC-----CeEEEeeeeCCCCCceeeceeeecccC-CCCceEEEEE
Q 019768 179 IGLLKVKVVKGINLAIR-----DMM-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVF 246 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~-----~~~-~~dPyv~i~l~-----~~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~ 246 (336)
...|+|+|+.|++++.. +.. ..||||+|.+. ...++|.+..++.||+|||+|.|.+.. +-..|.|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 35799999999987521 222 67999999983 345688888889999999999999865 4456899999
Q ss_pred ecCCCCCCCeeEEEEEeCccccccc
Q 019768 247 DHDTFSADDIMGEAEIDIQPLLTSA 271 (336)
Q Consensus 247 d~~~~~~dd~iG~~~i~l~~l~~~~ 271 (336)
|+|..+.++|+|++.+|+..|..+.
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy 512 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGI 512 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCc
Confidence 9999888999999999999997664
No 118
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.17 E-value=1.5e-10 Score=119.51 Aligned_cols=95 Identities=27% Similarity=0.560 Sum_probs=83.8
Q ss_pred eeEEEEEEEEEEEeeeecccCCCC---CCCcEEEEEECCe-EEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCC
Q 019768 175 MVEFIGLLKVKVVKGINLAIRDMM---SSDPYVVLRLGQQ-TVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDT 250 (336)
Q Consensus 175 ~~~~~g~L~V~v~~a~~L~~~~~~---~~dPyv~i~l~~~-~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~ 250 (336)
....+|+|.|.|..|++|...+.. ..|||+++.+... .-+|+++++++||+|||+|.+.+..-.+.|.|+|||.+.
T Consensus 431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~ 510 (1227)
T COG5038 431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNS 510 (1227)
T ss_pred cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccc
Confidence 345789999999999999998832 8999999998544 349999999999999999999998877899999999998
Q ss_pred CCCCCeeEEEEEeCccccc
Q 019768 251 FSADDIMGEAEIDIQPLLT 269 (336)
Q Consensus 251 ~~~dd~iG~~~i~l~~l~~ 269 (336)
+..|+.+|.+.++|..|..
T Consensus 511 ~~sd~vvG~~~l~L~~L~~ 529 (1227)
T COG5038 511 FKSDKVVGSTQLDLALLHQ 529 (1227)
T ss_pred cCCcceeeeEEechHHhhh
Confidence 8999999999999988753
No 119
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=8.7e-11 Score=113.95 Aligned_cols=92 Identities=36% Similarity=0.590 Sum_probs=78.8
Q ss_pred eeEEEEEEEEEEEeeeecccCCCC-CCCcEEEEEE--CC---eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEE
Q 019768 175 MVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRL--GQ---QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEV 245 (336)
Q Consensus 175 ~~~~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l--~~---~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V 245 (336)
.+...|.|+|.|++|++|...+.. ..||||++++ +. .+++|.+.++++||+|||+|.|.++. ....|.|+|
T Consensus 293 Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V 372 (421)
T KOG1028|consen 293 YLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTV 372 (421)
T ss_pred eecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEE
Confidence 344569999999999999999987 8899999998 22 35689999999999999999999875 335789999
Q ss_pred EecCCCCCCCeeEEEEEeCcc
Q 019768 246 FDHDTFSADDIMGEAEIDIQP 266 (336)
Q Consensus 246 ~d~~~~~~dd~iG~~~i~l~~ 266 (336)
||++.++.+++||.+.+....
T Consensus 373 ~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 373 WDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred EEcccccccceeeEEEecCCC
Confidence 999999999999988876654
No 120
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.15 E-value=1.3e-10 Score=111.98 Aligned_cols=130 Identities=30% Similarity=0.510 Sum_probs=104.4
Q ss_pred EEEEEEEEEeeeecccCCCC--CCCcEEEEEECCeEEEeeeeCCCCCceee-ceeeecccC---CCCceEEEEEecCCCC
Q 019768 179 IGLLKVKVVKGINLAIRDMM--SSDPYVVLRLGQQTVQTTIVKSNLNPVWN-EELMLSVPQ---EYGPVKLEVFDHDTFS 252 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~--~~dPyv~i~l~~~~~rT~~~~~t~nP~W~-e~f~f~v~~---~~~~L~v~V~d~~~~~ 252 (336)
.|.|.|.|..|++|+.+|.. ..|.||.+.++...++|.+..+++||.|| +.|.|.+.+ ..++|.|.+.|+|..+
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtys 81 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYS 81 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccc
Confidence 37789999999999999987 78999999999999999999999999999 689999876 5678999999999999
Q ss_pred CCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEe
Q 019768 253 ADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKL 317 (336)
Q Consensus 253 ~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l 317 (336)
.+|-||.+.|+++.|........ ---++..+.+|||..| .+..+.|++.--+++.|
T Consensus 82 andaigkv~i~idpl~~e~aaqa--vhgkgtvisgw~pifd-------tihgirgeinvivkvdl 137 (1169)
T KOG1031|consen 82 ANDAIGKVNIDIDPLCLEEAAQA--VHGKGTVISGWFPIFD-------TIHGIRGEINVIVKVDL 137 (1169)
T ss_pred cccccceeeeccChHHHHhHHhh--hcCCceEEeeeeecce-------ecccccceeEEEEEEee
Confidence 99999999999999864321110 0124677899999766 34445566555555554
No 121
>PLN02952 phosphoinositide phospholipase C
Probab=99.11 E-value=6.8e-10 Score=110.68 Aligned_cols=92 Identities=27% Similarity=0.411 Sum_probs=75.5
Q ss_pred EEEEEEEEEeeeecccC------CCC-CCCcEEEEEE-----CCeEEEeeeeCCCCCceeeceeeecccC-CCCceEEEE
Q 019768 179 IGLLKVKVVKGINLAIR------DMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEV 245 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~------~~~-~~dPyv~i~l-----~~~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V 245 (336)
...|+|.|+.|++++.. +.. ..||||++.+ +..+++|+++.++.||+|||+|.|.+.. +-..|.|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 45799999999887531 111 3599999998 2456799999999999999999998865 345689999
Q ss_pred EecCCCCCCCeeEEEEEeCcccccc
Q 019768 246 FDHDTFSADDIMGEAEIDIQPLLTS 270 (336)
Q Consensus 246 ~d~~~~~~dd~iG~~~i~l~~l~~~ 270 (336)
||+|..+.++|+|++.+||..|..+
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~G 573 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPG 573 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCC
Confidence 9999988899999999999999755
No 122
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.08 E-value=2.4e-10 Score=118.04 Aligned_cols=98 Identities=39% Similarity=0.565 Sum_probs=89.0
Q ss_pred cceeEEEEEEEEEEEeeeecccCCCC-CCCcEEEEEECCe-EEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecC
Q 019768 173 VGMVEFIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQ-TVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHD 249 (336)
Q Consensus 173 ~g~~~~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~-~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~ 249 (336)
..|++..|-|+|.+..|.||+..+.. .+||||++.+... .++|+++++|+||+|||.|.+++.. ....+.+.|+|||
T Consensus 1033 ~emv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd 1112 (1227)
T COG5038 1033 VEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWD 1112 (1227)
T ss_pred ceeecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecc
Confidence 45788899999999999999999988 6999999999665 6899999999999999999999985 5678999999999
Q ss_pred CCCCCCeeEEEEEeCcccccc
Q 019768 250 TFSADDIMGEAEIDIQPLLTS 270 (336)
Q Consensus 250 ~~~~dd~iG~~~i~l~~l~~~ 270 (336)
...+++.||.+.++|..+..+
T Consensus 1113 ~~~knd~lg~~~idL~~l~~~ 1133 (1227)
T COG5038 1113 SGEKNDLLGTAEIDLSKLEPG 1133 (1227)
T ss_pred cCCCccccccccccHhhcCcC
Confidence 999999999999999998644
No 123
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.97 E-value=2.1e-09 Score=107.36 Aligned_cols=93 Identities=25% Similarity=0.463 Sum_probs=76.0
Q ss_pred EEEEEEEeeeecccC-CCC----CCCcEEEEEECC-----eEEEee-eeCCCCCceeeceeeecccC-CCCceEEEEEec
Q 019768 181 LLKVKVVKGINLAIR-DMM----SSDPYVVLRLGQ-----QTVQTT-IVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDH 248 (336)
Q Consensus 181 ~L~V~v~~a~~L~~~-~~~----~~dPyv~i~l~~-----~~~rT~-~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~ 248 (336)
+|+|.|+.|+++... +.. ..||||.+.+-+ ...+|+ +..++.||.|+|+|+|.+.. +-..|.|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 799999999966542 222 579999999833 456899 55569999999999999865 446789999999
Q ss_pred CCCCCCCeeEEEEEeCccccccccc
Q 019768 249 DTFSADDIMGEAEIDIQPLLTSALA 273 (336)
Q Consensus 249 ~~~~~dd~iG~~~i~l~~l~~~~~~ 273 (336)
|..++|||+|+..+|+..|..+.++
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRh 721 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRH 721 (746)
T ss_pred CCCCcccccceeeccHHHhhCceee
Confidence 9999999999999999999876544
No 124
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.96 E-value=1.9e-09 Score=107.38 Aligned_cols=95 Identities=25% Similarity=0.410 Sum_probs=77.3
Q ss_pred EEEEEEEEEeeeecccC------CCC-CCCcEEEEEE-----CCeEEEeeeeCCCCCceeeceeeecccC-CCCceEEEE
Q 019768 179 IGLLKVKVVKGINLAIR------DMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEV 245 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~------~~~-~~dPyv~i~l-----~~~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V 245 (336)
..+|.|+|+.|++++.. +.. ..||||+|.+ +..+.+|++..++.||+|||+|.|.+.- +-..|.|.|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 35799999999986421 112 4799999998 2345789998899999999999998765 446789999
Q ss_pred EecCCCCCCCeeEEEEEeCccccccccc
Q 019768 246 FDHDTFSADDIMGEAEIDIQPLLTSALA 273 (336)
Q Consensus 246 ~d~~~~~~dd~iG~~~i~l~~l~~~~~~ 273 (336)
+|+|..+.|+|+|+..+|+..|..+.+.
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR~ 575 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGIHA 575 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCccce
Confidence 9999988999999999999999876543
No 125
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.92 E-value=4.6e-09 Score=104.47 Aligned_cols=94 Identities=20% Similarity=0.289 Sum_probs=76.4
Q ss_pred EEEEEEEEEeeeecc----cCC--CC-CCCcEEEEEEC-----CeEEEeeeeCCCCCceeeceeeecccC-CCCceEEEE
Q 019768 179 IGLLKVKVVKGINLA----IRD--MM-SSDPYVVLRLG-----QQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEV 245 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~----~~~--~~-~~dPyv~i~l~-----~~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V 245 (336)
...|+|+|+.|.+++ ... .. ..||||+|.+. ..+.+|+++.++.||+|+|+|.|.+.. +-..|.|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 357999999998753 111 11 57999999983 356799999999999999999998755 446789999
Q ss_pred EecCCCCCCCeeEEEEEeCcccccccc
Q 019768 246 FDHDTFSADDIMGEAEIDIQPLLTSAL 272 (336)
Q Consensus 246 ~d~~~~~~dd~iG~~~i~l~~l~~~~~ 272 (336)
+|+|..+.++|+|+..+|+..|..+.+
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR 557 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGIR 557 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCccc
Confidence 999988889999999999999987654
No 126
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.89 E-value=4.5e-09 Score=81.10 Aligned_cols=86 Identities=14% Similarity=0.260 Sum_probs=71.8
Q ss_pred EEEEEEeeeecccCC---CC-CCCcEEEEEECCe-EEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCe
Q 019768 182 LKVKVVKGINLAIRD---MM-SSDPYVVLRLGQQ-TVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDI 256 (336)
Q Consensus 182 L~V~v~~a~~L~~~~---~~-~~dPyv~i~l~~~-~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~ 256 (336)
|+|+|..++++...+ +. .+||||.+.++.. +.||++ +.||.|||.|.|++. ....+.|.|||+.. ...-.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEiel~VyDk~~-~~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEEEVIVYDKGG-DQPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEEEEEEEeCCC-Ceecc
Confidence 689999999998877 34 7899999999886 778887 489999999999995 46789999999865 35568
Q ss_pred eEEEEEeCcccccccc
Q 019768 257 MGEAEIDIQPLLTSAL 272 (336)
Q Consensus 257 iG~~~i~l~~l~~~~~ 272 (336)
||..-+.|+++.+.-+
T Consensus 76 i~llW~~~sdi~Ee~R 91 (109)
T cd08689 76 VGLLWLRLSDIAEEIR 91 (109)
T ss_pred eeeehhhHHHHHHHHH
Confidence 9999999999886543
No 127
>PLN02228 Phosphoinositide phospholipase C
Probab=98.85 E-value=1e-08 Score=101.73 Aligned_cols=94 Identities=20% Similarity=0.336 Sum_probs=76.4
Q ss_pred EEEEEEEEEeeeeccc---CC---CC-CCCcEEEEEE-----CCeEEEeeeeCCCCCcee-eceeeecccC-CCCceEEE
Q 019768 179 IGLLKVKVVKGINLAI---RD---MM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVW-NEELMLSVPQ-EYGPVKLE 244 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~---~~---~~-~~dPyv~i~l-----~~~~~rT~~~~~t~nP~W-~e~f~f~v~~-~~~~L~v~ 244 (336)
...|+|+|+.|++|+. .+ .. ..||||++.+ +..+++|+++.++.||+| +|+|.|.+.. +-..|.|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 3579999999998731 11 12 4799999998 335679999999999999 9999999865 34678999
Q ss_pred EEecCCCCCCCeeEEEEEeCcccccccc
Q 019768 245 VFDHDTFSADDIMGEAEIDIQPLLTSAL 272 (336)
Q Consensus 245 V~d~~~~~~dd~iG~~~i~l~~l~~~~~ 272 (336)
|+|+|..+.++|+|+..+|+..|..+.+
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~GYR 537 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSGVR 537 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCCee
Confidence 9999988899999999999999976653
No 128
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.81 E-value=1.3e-09 Score=107.47 Aligned_cols=89 Identities=33% Similarity=0.517 Sum_probs=79.3
Q ss_pred EEEEEEEEeeeecccCCCC-CCCcEEEEEECCe-------EEEeeeeCCCCCceeeceeeecccC-----CCCceEEEEE
Q 019768 180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQ-------TVQTTIVKSNLNPVWNEELMLSVPQ-----EYGPVKLEVF 246 (336)
Q Consensus 180 g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~-------~~rT~~~~~t~nP~W~e~f~f~v~~-----~~~~L~v~V~ 246 (336)
-.|.|.|+.|+++.+.|.+ .+||||+|.++.. .++|+|+.+|+||+|+|.|+|.|+. +...|.|+|+
T Consensus 947 q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVM 1026 (1103)
T KOG1328|consen 947 QTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVM 1026 (1103)
T ss_pred cchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEee
Confidence 4588899999999999987 8999999999764 3599999999999999999999976 2456899999
Q ss_pred ecCCCCCCCeeEEEEEeCcccc
Q 019768 247 DHDTFSADDIMGEAEIDIQPLL 268 (336)
Q Consensus 247 d~~~~~~dd~iG~~~i~l~~l~ 268 (336)
|+|-++.+||-|++.+.|.++.
T Consensus 1027 DHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1027 DHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred ccceecccccchHHHHhhCCCC
Confidence 9999999999999999998874
No 129
>PLN02352 phospholipase D epsilon
Probab=98.77 E-value=5.5e-08 Score=98.87 Aligned_cols=118 Identities=18% Similarity=0.321 Sum_probs=88.5
Q ss_pred EEEEEEEEEEeeeecccCCC-----C-CCCcEEEEEECCeEE-EeeeeCCCCCceeeceeeecccCCC-CceEEEEEecC
Q 019768 178 FIGLLKVKVVKGINLAIRDM-----M-SSDPYVVLRLGQQTV-QTTIVKSNLNPVWNEELMLSVPQEY-GPVKLEVFDHD 249 (336)
Q Consensus 178 ~~g~L~V~v~~a~~L~~~~~-----~-~~dPyv~i~l~~~~~-rT~~~~~t~nP~W~e~f~f~v~~~~-~~L~v~V~d~~ 249 (336)
.-|.|.++|.+|+-+...-. . ..||||.+.+++.+. || .+..||+|+|.|.+++.... ..+.|.|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~-- 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT-- 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--
Confidence 46899999999984433211 1 339999999988665 77 55669999999999998765 679999987
Q ss_pred CCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEecccccceEEEEE
Q 019768 250 TFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKLQNVESGELELEL 329 (336)
Q Consensus 250 ~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l 329 (336)
...+||.+.||+.+++.+ ...+++||++-+ .+|+. ....+|++++
T Consensus 83 ---~~~~ig~~~~p~~~~~~g-----------~~~~~~~~~~~~-----------~~~~p----------~~~~~~~~~~ 127 (758)
T PLN02352 83 ---KCSILGRFHIQAHQIVTE-----------ASFINGFFPLIM-----------ENGKP----------NPELKLRFML 127 (758)
T ss_pred ---CCeEEEEEEEEHHHhhCC-----------CcccceEEEccc-----------CCCCC----------CCCCEEEEEE
Confidence 357999999999998643 234899998544 23332 1225899999
Q ss_pred EEEeCC
Q 019768 330 EWMPLD 335 (336)
Q Consensus 330 ~~~~~~ 335 (336)
+|+|+.
T Consensus 128 ~~~~~~ 133 (758)
T PLN02352 128 WFRPAE 133 (758)
T ss_pred EEEEhh
Confidence 999975
No 130
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.74 E-value=3.3e-08 Score=98.80 Aligned_cols=92 Identities=22% Similarity=0.418 Sum_probs=77.5
Q ss_pred EEEEEEEEeeeecccCCCCCCCcEEEEEEC-----CeE-EEeeeeCCCCCceee-ceeeecccC-CCCceEEEEEecCCC
Q 019768 180 GLLKVKVVKGINLAIRDMMSSDPYVVLRLG-----QQT-VQTTIVKSNLNPVWN-EELMLSVPQ-EYGPVKLEVFDHDTF 251 (336)
Q Consensus 180 g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~-----~~~-~rT~~~~~t~nP~W~-e~f~f~v~~-~~~~L~v~V~d~~~~ 251 (336)
-.|.|.|+.|+.|+..+.+...|||.|.+- ..+ ++|.++.+++||+|| |.|+|.|.. +-..|.|.|+|.|.+
T Consensus 1065 ~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmf 1144 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMF 1144 (1267)
T ss_pred eEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccccc
Confidence 458899999999997776667799999983 233 456677789999999 999999977 456789999999999
Q ss_pred CCCCeeEEEEEeCccccccc
Q 019768 252 SADDIMGEAEIDIQPLLTSA 271 (336)
Q Consensus 252 ~~dd~iG~~~i~l~~l~~~~ 271 (336)
+...|||++..|+..+..+-
T Consensus 1145 s~~~FiaqA~yPv~~ik~Gf 1164 (1267)
T KOG1264|consen 1145 SDPNFLAQATYPVKAIKSGF 1164 (1267)
T ss_pred CCcceeeeeecchhhhhccc
Confidence 99899999999999987654
No 131
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.67 E-value=4.5e-09 Score=103.78 Aligned_cols=118 Identities=25% Similarity=0.517 Sum_probs=89.1
Q ss_pred EEEEEEeeeecccCCCC-CCCcEEEEEECC-------------------------------eEEEeeeeCCCCCceeece
Q 019768 182 LKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-------------------------------QTVQTTIVKSNLNPVWNEE 229 (336)
Q Consensus 182 L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-------------------------------~~~rT~~~~~t~nP~W~e~ 229 (336)
+.|.+.+|++|..++.. -+|||+.+.+-. -.+-|.+.++|+||+|+|.
T Consensus 116 l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~Ek 195 (1103)
T KOG1328|consen 116 LNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSEK 195 (1103)
T ss_pred HHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhhh
Confidence 67778889999888876 789999887610 0124678888999999999
Q ss_pred eeecccC-CCCceEEEEEecCCC---------------------------------CC---CCeeEEEEEeCcccccccc
Q 019768 230 LMLSVPQ-EYGPVKLEVFDHDTF---------------------------------SA---DDIMGEAEIDIQPLLTSAL 272 (336)
Q Consensus 230 f~f~v~~-~~~~L~v~V~d~~~~---------------------------------~~---dd~iG~~~i~l~~l~~~~~ 272 (336)
|.|.|.+ ....+.+.|||+|.- +. |||+|.+.|||.++...
T Consensus 196 F~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~~-- 273 (1103)
T KOG1328|consen 196 FQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPPD-- 273 (1103)
T ss_pred eeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCcc--
Confidence 9999987 567899999998821 23 89999999999998533
Q ss_pred cCCCCCccCceeeceeeecCCcccccccceeeecCeEEEEEEEEe
Q 019768 273 AFGDPEMFGNMQIGKWLKSDDNALLEDSTINIIDGKVKQKISLKL 317 (336)
Q Consensus 273 ~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~~~g~~~~~~~l~l 317 (336)
-++.||.|. ..+.-.-..|.+...+||--
T Consensus 274 -----------Gld~WFkLe-----pRS~~S~VqG~~~LklwLsT 302 (1103)
T KOG1328|consen 274 -----------GLDQWFKLE-----PRSDKSKVQGQVKLKLWLST 302 (1103)
T ss_pred -----------hHHHHhccC-----cccccccccceEEEEEEEee
Confidence 378999753 34445555677766666644
No 132
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.40 E-value=2e-07 Score=96.55 Aligned_cols=103 Identities=22% Similarity=0.367 Sum_probs=82.8
Q ss_pred EEEEEEEEEeeeeccc-CCCCCCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeec-ccC---CCCceEEEEEec
Q 019768 179 IGLLKVKVVKGINLAI-RDMMSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLS-VPQ---EYGPVKLEVFDH 248 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~-~~~~~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~-v~~---~~~~L~v~V~d~ 248 (336)
.|+|+|.|..|++|+- .|...+||||++++.. .+.||+++++|.||.|||...+. ++. ....|.++||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 4999999999999954 4444899999999943 35699999999999999998877 322 236799999999
Q ss_pred CCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768 249 DTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 249 ~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~ 293 (336)
+.+..+.++|.+.|+|.++... ....+||+|..
T Consensus 1603 ~~~~en~~lg~v~i~L~~~~l~------------kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLL------------KESVGWYNLGA 1635 (1639)
T ss_pred cceeeeeeeeeeecchhhcchh------------hhhcceeeccc
Confidence 9998899999999999887432 22347998643
No 133
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.37 E-value=2.6e-07 Score=94.49 Aligned_cols=89 Identities=31% Similarity=0.465 Sum_probs=78.4
Q ss_pred EEEEEEEEEeeeecccCCCC-CCCcEEEEEECCeE--EEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCCCCCC
Q 019768 179 IGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQQT--VQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTFSAD 254 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~~~--~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~~~d 254 (336)
.-.++|+|++|.+|.+.|.. ..|||+.+.+|++. -++..+.+|+||+|.+.|.+.... ....|.++|||+|.++.|
T Consensus 612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d 691 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQD 691 (1105)
T ss_pred eeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccccc
Confidence 35678999999999999987 99999999999887 477889999999999999887654 346789999999999999
Q ss_pred CeeEEEEEeCccc
Q 019768 255 DIMGEAEIDIQPL 267 (336)
Q Consensus 255 d~iG~~~i~l~~l 267 (336)
+.||+..++|+.-
T Consensus 692 ~~iget~iDLEnR 704 (1105)
T KOG1326|consen 692 EKIGETTIDLENR 704 (1105)
T ss_pred chhhceehhhhhc
Confidence 9999999999764
No 134
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.27 E-value=1.1e-06 Score=87.24 Aligned_cols=98 Identities=17% Similarity=0.275 Sum_probs=73.2
Q ss_pred EEEEeeeecccCCCCCCCcEEEEEECCe----EEEeeeeCCCCCceeeceeeecccCC----------------CCceEE
Q 019768 184 VKVVKGINLAIRDMMSSDPYVVLRLGQQ----TVQTTIVKSNLNPVWNEELMLSVPQE----------------YGPVKL 243 (336)
Q Consensus 184 V~v~~a~~L~~~~~~~~dPyv~i~l~~~----~~rT~~~~~t~nP~W~e~f~f~v~~~----------------~~~L~v 243 (336)
..++.++.+.+...+.+|||+++...+. ..+|++.++|.+|.|+|.|.|.+... ...|++
T Consensus 135 c~~L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv 214 (800)
T KOG2059|consen 135 CHVLKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRV 214 (800)
T ss_pred hhhhhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEE
Confidence 3344555555555557899999988543 35999999999999999999987543 235889
Q ss_pred EEEe-cCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768 244 EVFD-HDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 244 ~V~d-~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~ 293 (336)
++|+ ++....++|+|++.+++..+.. ...-..||-|..
T Consensus 215 ~lW~~~~~~~~~~FlGevrv~v~~~~~------------~s~p~~W~~Lqp 253 (800)
T KOG2059|consen 215 DLWNDLNLVINDVFLGEVRVPVDVLRQ------------KSSPAAWYYLQP 253 (800)
T ss_pred eeccchhhhhhhhhceeEEeehhhhhh------------ccCccceEEEec
Confidence 9999 6666669999999999988752 223457997655
No 135
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.15 E-value=5.5e-06 Score=66.13 Aligned_cols=98 Identities=24% Similarity=0.429 Sum_probs=71.5
Q ss_pred EEEEEEeeeecccC-------C--C--C---CCCcEEEEEE----CCeEEEeeeeCCCCCceeeceeeecccC-------
Q 019768 182 LKVKVVKGINLAIR-------D--M--M---SSDPYVVLRL----GQQTVQTTIVKSNLNPVWNEELMLSVPQ------- 236 (336)
Q Consensus 182 L~V~v~~a~~L~~~-------~--~--~---~~dPyv~i~l----~~~~~rT~~~~~t~nP~W~e~f~f~v~~------- 236 (336)
|.|.|++|.+|+.. + . . .-++|+++.+ ++...+|+++.++..|.|+..++|+++-
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 35667777777521 1 1 1 3589999986 4567899999999999999999998761
Q ss_pred ---------CCCceEEEEEecCCC----------CCCCeeEEEEEeCcccccccccCCCCCccCceeeceeee
Q 019768 237 ---------EYGPVKLEVFDHDTF----------SADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLK 290 (336)
Q Consensus 237 ---------~~~~L~v~V~d~~~~----------~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~ 290 (336)
+...+.++||+...- .+|-+||.+.||+.+|+.. -.-+.+|||
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~-----------rsGitGW~p 142 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK-----------RSGITGWYP 142 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc-----------ccCcccccc
Confidence 124688999997642 2345899999999999743 234678987
No 136
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=4.8e-06 Score=81.92 Aligned_cols=113 Identities=19% Similarity=0.276 Sum_probs=91.6
Q ss_pred EEEEEEEEeeeecccCCCCCCCcEEEEEE-C------CeEEEeeeeCCCCCceeeceeeecccCC----CCceEEEEEec
Q 019768 180 GLLKVKVVKGINLAIRDMMSSDPYVVLRL-G------QQTVQTTIVKSNLNPVWNEELMLSVPQE----YGPVKLEVFDH 248 (336)
Q Consensus 180 g~L~V~v~~a~~L~~~~~~~~dPyv~i~l-~------~~~~rT~~~~~t~nP~W~e~f~f~v~~~----~~~L~v~V~d~ 248 (336)
..++|.|+.|.+|.-...+.--|||.+.+ | +.++.|++..++..|.+||+|+|-+.++ .-.|.|.|-|+
T Consensus 1125 hkvtvkvvaandlkwqtsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDY 1204 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQTSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDY 1204 (1283)
T ss_pred ceEEEEEEecccccchhccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhh
Confidence 45889999999999877777789999987 2 2456889999999999999999998653 33588999998
Q ss_pred CCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCCcccccccceee
Q 019768 249 DTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDDNALLEDSTINI 304 (336)
Q Consensus 249 ~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~~~~~~~~~~~~ 304 (336)
--...|..+|.+.++|.++... ....-|+||..+.-..++.+.+
T Consensus 1205 CFAReDRvvGl~VlqL~~va~k------------GS~a~W~pLgrrihmDeTGLti 1248 (1283)
T KOG1011|consen 1205 CFAREDRVVGLAVLQLRSVADK------------GSCACWVPLGRRIHMDETGLTI 1248 (1283)
T ss_pred eeecccceeeeeeeehhhHhhc------------CceeEeeeccccccccccchhH
Confidence 8777788999999999998643 2456799998888777766554
No 137
>PLN02964 phosphatidylserine decarboxylase
Probab=98.13 E-value=5e-06 Score=84.11 Aligned_cols=91 Identities=24% Similarity=0.457 Sum_probs=76.7
Q ss_pred ceeEEEEEEEEEEEeeeecccCCCCCCCcEE-EEEECCeEEEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCCC
Q 019768 174 GMVEFIGLLKVKVVKGINLAIRDMMSSDPYV-VLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDTF 251 (336)
Q Consensus 174 g~~~~~g~L~V~v~~a~~L~~~~~~~~dPyv-~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~~ 251 (336)
.+..+.|.+.|++++|+ ++. .|||. .+++|.+.+||.+.++|+||+||+...|.+.. +.....+.|||++.+
T Consensus 48 ~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (644)
T PLN02964 48 SAEDFSGIALLTLVGAE----MKF--KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRL 121 (644)
T ss_pred ecccccCeEEEEeehhh----hcc--CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCC
Confidence 45679999999999997 332 38865 56789999999999999999999998888865 445579999999999
Q ss_pred CCCCeeEEEEEeCcccccc
Q 019768 252 SADDIMGEAEIDIQPLLTS 270 (336)
Q Consensus 252 ~~dd~iG~~~i~l~~l~~~ 270 (336)
+.++++|.++++|..+...
T Consensus 122 s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 122 SKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred CHHHhhhheeecHhhccHH
Confidence 9999999999988777643
No 138
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=1.7e-05 Score=72.55 Aligned_cols=87 Identities=31% Similarity=0.367 Sum_probs=72.8
Q ss_pred EEEEEEEEEEeeeecccCCCC-CCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEec
Q 019768 178 FIGLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDH 248 (336)
Q Consensus 178 ~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~ 248 (336)
...-|.|+++.+..|...|.. .+||||..++.. .+++|.+.+++++|.|+++|.|.+.+ ....+.|.|||+
T Consensus 231 ~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~ 310 (362)
T KOG1013|consen 231 TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDY 310 (362)
T ss_pred CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeeccc
Confidence 346689999999999999987 899999999843 35689999999999999999999876 345688999999
Q ss_pred CCCCCCCeeEEEEEeC
Q 019768 249 DTFSADDIMGEAEIDI 264 (336)
Q Consensus 249 ~~~~~dd~iG~~~i~l 264 (336)
+.....+++|-...-+
T Consensus 311 ~~G~s~d~~GG~~~g~ 326 (362)
T KOG1013|consen 311 DIGKSNDSIGGSMLGG 326 (362)
T ss_pred CCCcCccCCCcccccc
Confidence 9977889998755443
No 139
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=1.4e-05 Score=74.38 Aligned_cols=108 Identities=20% Similarity=0.322 Sum_probs=86.9
Q ss_pred eeEEEEEEEEEEEeeeecccCCCC--CCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccCCCCceEEEEE-
Q 019768 175 MVEFIGLLKVKVVKGINLAIRDMM--SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVF- 246 (336)
Q Consensus 175 ~~~~~g~L~V~v~~a~~L~~~~~~--~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~- 246 (336)
...-+|.|.|.|++|++|..+... .++|||++++-. .+.+|+...+|++|.+.+...|.-......|.+.||
T Consensus 264 ~~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~g 343 (405)
T KOG2060|consen 264 LMDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWG 343 (405)
T ss_pred hhcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEec
Confidence 455679999999999999877655 789999999832 346899999999999999999988888889999999
Q ss_pred ecCCCCCCCeeEEEEEeCcccccccccCCCCCccCceeeceeeecCC
Q 019768 247 DHDTFSADDIMGEAEIDIQPLLTSALAFGDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 247 d~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~wf~l~~ 293 (336)
|+..+.++.|+|.+.+-+.+|-.+ ....-.||++..
T Consensus 344 dygRmd~k~fmg~aqi~l~eL~ls-----------~~~~igwyKlfg 379 (405)
T KOG2060|consen 344 DYGRMDHKSFMGVAQIMLDELNLS-----------SSPVIGWYKLFG 379 (405)
T ss_pred cccccchHHHhhHHHHHhhhhccc-----------cccceeeeeccC
Confidence 567777788999999988887432 234567987543
No 140
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.60 E-value=6.6e-05 Score=77.40 Aligned_cols=130 Identities=21% Similarity=0.351 Sum_probs=90.0
Q ss_pred EEEEEEeeeecccCCCC-----CCCcEEEEEEC---CeEEEeeeeCCCC----CceeeceeeecccC-------------
Q 019768 182 LKVKVVKGINLAIRDMM-----SSDPYVVLRLG---QQTVQTTIVKSNL----NPVWNEELMLSVPQ------------- 236 (336)
Q Consensus 182 L~V~v~~a~~L~~~~~~-----~~dPyv~i~l~---~~~~rT~~~~~t~----nP~W~e~f~f~v~~------------- 236 (336)
|+|.+..-.+....+.. ++|-||.=.+- ..+++|.++++++ +-.|.-.|-|....
T Consensus 848 lrviiWnt~~v~l~dd~~~ge~~sdIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke~~ 927 (1105)
T KOG1326|consen 848 LRVIIWNTDKVRLNDDEITGEKMSDIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKEYS 927 (1105)
T ss_pred EEEEEeeccceeecCccceeeeccceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhhhc
Confidence 66666555554443322 68999987763 3567888888754 44455444443211
Q ss_pred ---------CCCceEEEEEecCCCCCCCeeEEEEEeCcccccccccC----------CCCCccCceeeceeeecCCcccc
Q 019768 237 ---------EYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAF----------GDPEMFGNMQIGKWLKSDDNALL 297 (336)
Q Consensus 237 ---------~~~~L~v~V~d~~~~~~dd~iG~~~i~l~~l~~~~~~~----------~~~~~~~~~~~~~wf~l~~~~~~ 297 (336)
....|.|+|||.|.++.|+|+|..+++|+++..+.+.- ....+++...+.+|+|+..
T Consensus 928 ws~dete~k~p~rl~iqiWD~d~fs~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~GWwP~~a---- 1003 (1105)
T KOG1326|consen 928 WSLDETEFKIPARLIIQIWDNDKFSKDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKGWWPCQA---- 1003 (1105)
T ss_pred cccccccccCchheEEEecccCccChhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccccccceeee----
Confidence 01358999999999999999999999999988764433 2357789999999999544
Q ss_pred cccceeeecCeEEEEEEE
Q 019768 298 EDSTINIIDGKVKQKISL 315 (336)
Q Consensus 298 ~~~~~~~~~g~~~~~~~l 315 (336)
.++.-.+..|++..++.+
T Consensus 1004 ~~~~~~~l~Gkvem~lei 1021 (1105)
T KOG1326|consen 1004 EEGDAKVLAGKVEMSLEI 1021 (1105)
T ss_pred cCCCcceecceeeeehhh
Confidence 466777788888665554
No 141
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=1.2e-05 Score=73.63 Aligned_cols=90 Identities=23% Similarity=0.395 Sum_probs=73.9
Q ss_pred EEEEEEEEeeeecccCCCC-CCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeeccc--C--CCCceEEEEEecC
Q 019768 180 GLLKVKVVKGINLAIRDMM-SSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVP--Q--EYGPVKLEVFDHD 249 (336)
Q Consensus 180 g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~--~--~~~~L~v~V~d~~ 249 (336)
-.+..++..|++|.+++.. ..|||+.+.+.. .+.+|++..+++||.|+|....... . ....+.+.|.|.+
T Consensus 93 ~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~ 172 (362)
T KOG1013|consen 93 RMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDND 172 (362)
T ss_pred hhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCc
Confidence 4578899999999999998 899999998844 3468899999999999987655432 2 3356788999999
Q ss_pred CCCCCCeeEEEEEeCccccc
Q 019768 250 TFSADDIMGEAEIDIQPLLT 269 (336)
Q Consensus 250 ~~~~dd~iG~~~i~l~~l~~ 269 (336)
.+..++++|+..+++..+..
T Consensus 173 ~~~~~~sqGq~r~~lkKl~p 192 (362)
T KOG1013|consen 173 KKTHNESQGQSRVSLKKLKP 192 (362)
T ss_pred ccccccCcccchhhhhccCh
Confidence 99999999999998888753
No 142
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.17 E-value=0.00089 Score=65.79 Aligned_cols=84 Identities=26% Similarity=0.507 Sum_probs=67.6
Q ss_pred EEEeeeecccCCCC-CCCcEEEEEEC--C----eEEEeeeeCCCCCceeeceeeeccc-----CCCCceEEEEEecCCCC
Q 019768 185 KVVKGINLAIRDMM-SSDPYVVLRLG--Q----QTVQTTIVKSNLNPVWNEELMLSVP-----QEYGPVKLEVFDHDTFS 252 (336)
Q Consensus 185 ~v~~a~~L~~~~~~-~~dPyv~i~l~--~----~~~rT~~~~~t~nP~W~e~f~f~v~-----~~~~~L~v~V~d~~~~~ 252 (336)
..++|++|..++.. ++|||..++-. . ..++|.+++++++|.|.+ |.+... +....+.+.+||++.-+
T Consensus 141 ~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~ 219 (529)
T KOG1327|consen 141 FSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNG 219 (529)
T ss_pred eeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCC
Confidence 34567889999987 99999988752 2 236999999999999998 444432 24578999999999999
Q ss_pred CCCeeEEEEEeCccccc
Q 019768 253 ADDIMGEAEIDIQPLLT 269 (336)
Q Consensus 253 ~dd~iG~~~i~l~~l~~ 269 (336)
++++||.+..++.++..
T Consensus 220 ~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 220 KHDLIGKFQTTLSELQE 236 (529)
T ss_pred CcCceeEecccHHHhcc
Confidence 99999999999988853
No 143
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.07 E-value=0.0013 Score=49.22 Aligned_cols=84 Identities=12% Similarity=0.208 Sum_probs=61.7
Q ss_pred EEEEEeeeecccCCCC--CCCcEEE--EEECC-eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCCCCCC
Q 019768 183 KVKVVKGINLAIRDMM--SSDPYVV--LRLGQ-QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTFSAD 254 (336)
Q Consensus 183 ~V~v~~a~~L~~~~~~--~~dPyv~--i~l~~-~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~~~d 254 (336)
-|+|+.+++|.-.... .+.-|++ +.+.+ -..+|.......||+|.|+|.|.+.. ..-.|.|.|+. ...+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 3778888888654443 3334543 33433 35689999999999999999999854 34568889988 44577
Q ss_pred CeeEEEEEeCcccc
Q 019768 255 DIMGEAEIDIQPLL 268 (336)
Q Consensus 255 d~iG~~~i~l~~l~ 268 (336)
+.||.+.+.++++-
T Consensus 80 e~iG~~sL~l~s~g 93 (103)
T cd08684 80 RTIGECSLSLRTLS 93 (103)
T ss_pred ceeeEEEeecccCC
Confidence 89999999998874
No 144
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.03 E-value=0.00049 Score=64.93 Aligned_cols=89 Identities=22% Similarity=0.418 Sum_probs=67.5
Q ss_pred EEEEEEEeeeecccCCCC-CCCcEEEEEE-----CCeEEEeeeeCCCCCceeeceeeecccCC------------CCceE
Q 019768 181 LLKVKVVKGINLAIRDMM-SSDPYVVLRL-----GQQTVQTTIVKSNLNPVWNEELMLSVPQE------------YGPVK 242 (336)
Q Consensus 181 ~L~V~v~~a~~L~~~~~~-~~dPyv~i~l-----~~~~~rT~~~~~t~nP~W~e~f~f~v~~~------------~~~L~ 242 (336)
.|.+.|+++.+++..... ..|-|+.+.+ ..++.+|.+++.|.+|.|+|.|.+.+... ...++
T Consensus 368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k 447 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK 447 (523)
T ss_pred HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence 366777777776654432 4578888876 23567899999999999999999988651 23589
Q ss_pred EEEEecCCC-CCCCeeEEEEEeCccccc
Q 019768 243 LEVFDHDTF-SADDIMGEAEIDIQPLLT 269 (336)
Q Consensus 243 v~V~d~~~~-~~dd~iG~~~i~l~~l~~ 269 (336)
|++|++..| .+|.++|.+.+.|..|..
T Consensus 448 feifhkggf~rSdkl~gt~nikle~Len 475 (523)
T KOG3837|consen 448 FEIFHKGGFNRSDKLTGTGNIKLEILEN 475 (523)
T ss_pred EEEeeccccccccceeceeeeeehhhhc
Confidence 999998765 457899999999987743
No 145
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.67 E-value=0.0034 Score=64.44 Aligned_cols=89 Identities=21% Similarity=0.411 Sum_probs=69.3
Q ss_pred EEEEEEEEEEeeeecccCCCCCCCcEEEEEEC-------CeEEEeeeeCC-CCCceeec-eeeec--ccCCCCceEEEEE
Q 019768 178 FIGLLKVKVVKGINLAIRDMMSSDPYVVLRLG-------QQTVQTTIVKS-NLNPVWNE-ELMLS--VPQEYGPVKLEVF 246 (336)
Q Consensus 178 ~~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~-------~~~~rT~~~~~-t~nP~W~e-~f~f~--v~~~~~~L~v~V~ 246 (336)
..+++.|+|++|+-|..+.. ..||.|.+= ...+||+++.. +.||+|+| .|.|. +-+.-..|.|.||
T Consensus 701 IA~t~sV~VISgqFLSdrkv---gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDRKV---GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EEeeEEEEEEeeeecccccc---CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 35889999999998887765 589999882 14568888876 89999996 56775 2335578999999
Q ss_pred ecCCCCCCCeeEEEEEeCccccccccc
Q 019768 247 DHDTFSADDIMGEAEIDIQPLLTSALA 273 (336)
Q Consensus 247 d~~~~~~dd~iG~~~i~l~~l~~~~~~ 273 (336)
+.. ..|||+-.+|+..|..+.+.
T Consensus 778 eEg----gK~ig~RIlpvd~l~~GYrh 800 (1189)
T KOG1265|consen 778 EEG----GKFIGQRILPVDGLNAGYRH 800 (1189)
T ss_pred ccC----CceeeeeccchhcccCccee
Confidence 855 36999999999998766544
No 146
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=95.75 E-value=0.013 Score=53.73 Aligned_cols=83 Identities=18% Similarity=0.231 Sum_probs=63.2
Q ss_pred ceeEEEEEEEEEEEeeeecccCCC--C-CCCcEEEEEECCe-EEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecC
Q 019768 174 GMVEFIGLLKVKVVKGINLAIRDM--M-SSDPYVVLRLGQQ-TVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHD 249 (336)
Q Consensus 174 g~~~~~g~L~V~v~~a~~L~~~~~--~-~~dPyv~i~l~~~-~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~ 249 (336)
.....+|.|.+.++++++|..... + +-+-||++..+.+ +-||.+.....--.|.|.|..++.. ...+.+-||.|+
T Consensus 45 ~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~ 123 (442)
T KOG1452|consen 45 RLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWP 123 (442)
T ss_pred eeecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecC
Confidence 345568999999999999976554 3 6789999998764 3467766667777899999988765 357888999988
Q ss_pred CCCCCCee
Q 019768 250 TFSADDIM 257 (336)
Q Consensus 250 ~~~~dd~i 257 (336)
.-.++.+.
T Consensus 124 pq~RHKLC 131 (442)
T KOG1452|consen 124 PQRRHKLC 131 (442)
T ss_pred chhhcccc
Confidence 76566543
No 147
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.72 E-value=0.14 Score=42.83 Aligned_cols=88 Identities=17% Similarity=0.302 Sum_probs=59.0
Q ss_pred EEEEEEEEeeeecccCCC---CCCCc--EEEEEECCeEEEeeeeCCCCCceeeceeeecccCC--------------CCc
Q 019768 180 GLLKVKVVKGINLAIRDM---MSSDP--YVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQE--------------YGP 240 (336)
Q Consensus 180 g~L~V~v~~a~~L~~~~~---~~~dP--yv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~~--------------~~~ 240 (336)
-.|++.|..++-....-. ...+. .+-+.+++++++|+.+..+.+|.|+|.|-|++... .++
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~p 88 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDP 88 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCc
Confidence 347888888765432211 22233 34455689999999999999999999999998652 135
Q ss_pred eEEEEEecCCCCCCCeeEEEEEeCccc
Q 019768 241 VKLEVFDHDTFSADDIMGEAEIDIQPL 267 (336)
Q Consensus 241 L~v~V~d~~~~~~dd~iG~~~i~l~~l 267 (336)
+.+-|.--|..+...++|.-.++=..+
T Consensus 89 ihivli~~d~~~~~~Lv~s~~ldWR~v 115 (156)
T PF15627_consen 89 IHIVLIRTDPSGETTLVGSHFLDWRKV 115 (156)
T ss_pred eEEEEEEecCCCceEeeeeceehHHHH
Confidence 677776666655556777666654444
No 148
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.41 E-value=0.11 Score=44.35 Aligned_cols=86 Identities=19% Similarity=0.273 Sum_probs=60.0
Q ss_pred EEEEEEEeeeecccCCCCCCCcEEEEEE--CCeE----EEeeeeCCCCCceeeceeeecccC----CCCceEEEEEecCC
Q 019768 181 LLKVKVVKGINLAIRDMMSSDPYVVLRL--GQQT----VQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDHDT 250 (336)
Q Consensus 181 ~L~V~v~~a~~L~~~~~~~~dPyv~i~l--~~~~----~rT~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~V~d~~~ 250 (336)
.+.|+|+.+.+|...+ ...+-||.+.+ |.+. ..|+.+.-...+.|||.+.|++.- ....|.|.||+...
T Consensus 9 ~f~i~i~~~~~~~~~~-~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~ 87 (173)
T cd08693 9 KFSITLHKISNLNAAE-RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSK 87 (173)
T ss_pred CEEEEEEEeccCccCC-CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEecc
Confidence 5789999999888611 14566777654 5543 355555556779999999998743 34679999998653
Q ss_pred CC----------------CCCeeEEEEEeCccc
Q 019768 251 FS----------------ADDIMGEAEIDIQPL 267 (336)
Q Consensus 251 ~~----------------~dd~iG~~~i~l~~l 267 (336)
.. .+..||.+.++|-+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 88 KAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred cccccccccccccccccCcceEEEEEeEEEEcc
Confidence 22 246899999998774
No 149
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.33 E-value=0.14 Score=43.17 Aligned_cols=85 Identities=19% Similarity=0.249 Sum_probs=59.3
Q ss_pred EEEEEEEEeeeecccCCCCCCCcEEEEEE--CCeEE----EeeeeCCCCCceeeceeeecccC----CCCceEEEEEecC
Q 019768 180 GLLKVKVVKGINLAIRDMMSSDPYVVLRL--GQQTV----QTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDHD 249 (336)
Q Consensus 180 g~L~V~v~~a~~L~~~~~~~~dPyv~i~l--~~~~~----rT~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~V~d~~ 249 (336)
..+.|+|+.+.++...+ ..+-||.+.+ |++.. .|+.+.. .++.|||...|++.- ....|.|+||+..
T Consensus 8 ~~~~v~i~~~~~~~~~~--~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 8 SNLRIKILCATYVNVND--IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred CCeEEEEEeeccCCCCC--cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 45789999999887653 3578888765 55432 4444443 679999999998742 3467999999965
Q ss_pred CCC----CCCeeEEEEEeCccc
Q 019768 250 TFS----ADDIMGEAEIDIQPL 267 (336)
Q Consensus 250 ~~~----~dd~iG~~~i~l~~l 267 (336)
.-. ....||.+.++|-+.
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred cccCCCCceEEEEEEEEEEECC
Confidence 421 224699999998774
No 150
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=95.24 E-value=0.11 Score=43.54 Aligned_cols=87 Identities=18% Similarity=0.239 Sum_probs=57.6
Q ss_pred EEEEEEEeeeecccCCCCCCCcEEEEEE--CCeE----EEeeeeCCCCCceeeceeeecccC----CCCceEEEEEecCC
Q 019768 181 LLKVKVVKGINLAIRDMMSSDPYVVLRL--GQQT----VQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDHDT 250 (336)
Q Consensus 181 ~L~V~v~~a~~L~~~~~~~~dPyv~i~l--~~~~----~rT~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~V~d~~~ 250 (336)
.+.|.+....++...+....+-||.+.+ |++. ..|.......++.|||...|++.- ....|.|+||+.+.
T Consensus 9 ~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~ 88 (156)
T cd08380 9 NLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSE 88 (156)
T ss_pred CeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEec
Confidence 4667777766665422224466776655 5442 244444334789999999998642 34679999999775
Q ss_pred CC--CCCeeEEEEEeCccc
Q 019768 251 FS--ADDIMGEAEIDIQPL 267 (336)
Q Consensus 251 ~~--~dd~iG~~~i~l~~l 267 (336)
.+ .+..||.+.++|-+.
T Consensus 89 ~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 89 PGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred CCCCcceEEEEEeEEeEcc
Confidence 43 457999999999774
No 151
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=94.91 E-value=0.0049 Score=64.36 Aligned_cols=74 Identities=22% Similarity=0.278 Sum_probs=58.7
Q ss_pred CCCCCCCcCCCC-CCCCeEEeeeceEEcccchhhhccCCCceeeEeEecCCCCCHHHHHHHHHhccccccchhhhhc
Q 019768 29 QRDNRICADCGA-PDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAF 104 (336)
Q Consensus 29 ~~~N~~C~dC~~-~~p~w~s~~~g~f~C~~C~~~hr~lg~~~s~v~s~~~d~~~~~~~~~~~~~ggN~~~n~~~e~~ 104 (336)
...+..|++|++ +.-.|+++|+.+-+|+.|+++|+.++.|++...++.|++..+ |......|++..-..+.+++
T Consensus 627 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~--vn~~d~~g~~plh~~~~~g~ 701 (785)
T KOG0521|consen 627 ASSDGECLPRIATALAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGAD--VNALDSKGRTPLHHATASGH 701 (785)
T ss_pred hccCccchhhhhhhhcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCc--chhhhccCCCcchhhhhhcc
Confidence 345889999997 577899999999999999999999999999999999988877 55555555444444444444
No 152
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=94.88 E-value=0.099 Score=44.07 Aligned_cols=69 Identities=19% Similarity=0.264 Sum_probs=49.7
Q ss_pred CCCcEEEEEE--CCeE----EEeeeeCCCCCceeeceeeecccC----CCCceEEEEEecCCCCCCCeeEEEEEeCccc
Q 019768 199 SSDPYVVLRL--GQQT----VQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDHDTFSADDIMGEAEIDIQPL 267 (336)
Q Consensus 199 ~~dPyv~i~l--~~~~----~rT~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~V~d~~~~~~dd~iG~~~i~l~~l 267 (336)
.++-||.+.+ +++. ..|..+.-+..+.|||...|++.- ....|.|+||+.+..+....||.+.++|-+.
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 3466776655 4432 355555556778999999998743 3467999999987655677999999998764
No 153
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=94.69 E-value=0.48 Score=44.87 Aligned_cols=102 Identities=21% Similarity=0.341 Sum_probs=76.3
Q ss_pred EEEEEEeeeecccCCCCCCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccC--------CCCceEEEEEecC-CCC
Q 019768 182 LKVKVVKGINLAIRDMMSSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ--------EYGPVKLEVFDHD-TFS 252 (336)
Q Consensus 182 L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~--------~~~~L~v~V~d~~-~~~ 252 (336)
+.|.|++|++.+.... ..-.+...+++....|..+..+-.|.|+..+.-.+.. ...+|++++|..+ .-+
T Consensus 2 ivl~i~egr~F~~~~~--~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~ 79 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPR--HPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTG 79 (340)
T ss_pred EEEEEecccCCCCCCC--ccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCC
Confidence 5788999999887632 2456777889999999999999999999887766532 4568999999987 445
Q ss_pred CCCeeEEEEEeCcccc-cccccCCCCCccCceeeceeeecCC
Q 019768 253 ADDIMGEAEIDIQPLL-TSALAFGDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 253 ~dd~iG~~~i~l~~l~-~~~~~~~~~~~~~~~~~~~wf~l~~ 293 (336)
..+.||.+.++|.... ... .......+||+|-.
T Consensus 80 ~re~iGyv~LdLRsa~~~~~--------~~~~~~~~W~~LL~ 113 (340)
T PF12416_consen 80 KRESIGYVVLDLRSAVVPQE--------KNQKQKPKWYKLLS 113 (340)
T ss_pred cceeccEEEEEccccccccc--------cccccCCCeeEccc
Confidence 6789999999998871 111 11234567998754
No 154
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=94.37 E-value=0.38 Score=41.02 Aligned_cols=90 Identities=19% Similarity=0.250 Sum_probs=61.8
Q ss_pred EEEEEEEEEEeeeecccCCCC-CCCcEEEEEE--CCeEE----EeeeeC--C--CCCceeeceeeecccC----CCCceE
Q 019768 178 FIGLLKVKVVKGINLAIRDMM-SSDPYVVLRL--GQQTV----QTTIVK--S--NLNPVWNEELMLSVPQ----EYGPVK 242 (336)
Q Consensus 178 ~~g~L~V~v~~a~~L~~~~~~-~~dPyv~i~l--~~~~~----rT~~~~--~--t~nP~W~e~f~f~v~~----~~~~L~ 242 (336)
....+.|+|..+.+++..... ..+-|+.+.+ |.+.. .|+... + ...+.|||...|++.- ....|.
T Consensus 6 v~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~ 85 (171)
T cd04012 6 VTDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV 85 (171)
T ss_pred ccccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence 345678889999888776543 4678887765 55432 443222 1 3367899999888742 345799
Q ss_pred EEEEecCCCC---------CCCeeEEEEEeCccc
Q 019768 243 LEVFDHDTFS---------ADDIMGEAEIDIQPL 267 (336)
Q Consensus 243 v~V~d~~~~~---------~dd~iG~~~i~l~~l 267 (336)
|+||+..... .+..||.+.++|-+.
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9999976543 356999999998774
No 155
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=93.71 E-value=2.3 Score=34.57 Aligned_cols=88 Identities=18% Similarity=0.292 Sum_probs=57.3
Q ss_pred EEEEEEEEEeeeecccCCCCCCCcEEEEEECCeE---EEeeeeC-CCCCceeeceeeecccC---------CCCceEEEE
Q 019768 179 IGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQQT---VQTTIVK-SNLNPVWNEELMLSVPQ---------EYGPVKLEV 245 (336)
Q Consensus 179 ~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~~~---~rT~~~~-~t~nP~W~e~f~f~v~~---------~~~~L~v~V 245 (336)
.=.+.|.|.+..+++... ...||....+... ..|.... .+-.-.|+|.|.+.+.- ....+.|.|
T Consensus 6 kf~~~l~i~~l~~~p~~~---~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 6 KFQFDLTIHELENLPSSN---GKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred eEEEEEEEEEeECcCCCC---CEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 345778888888777722 2345555555543 3444333 35668899999887632 223578888
Q ss_pred EecCCCCCCCeeEEEEEeCccccc
Q 019768 246 FDHDTFSADDIMGEAEIDIQPLLT 269 (336)
Q Consensus 246 ~d~~~~~~dd~iG~~~i~l~~l~~ 269 (336)
+....-++...+|.+.++|.+++.
T Consensus 83 ~~~~~~~~k~~lG~~~inLaey~~ 106 (143)
T PF10358_consen 83 FEVDGSGKKKVLGKVSINLAEYAN 106 (143)
T ss_pred EEecCCCccceEEEEEEEHHHhhC
Confidence 887432333699999999999864
No 156
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=92.42 E-value=1.1 Score=38.53 Aligned_cols=87 Identities=13% Similarity=0.126 Sum_probs=53.7
Q ss_pred EEEEEEEeeeecccCCCCCCCcEEEEEE--CCeE---EEeeeeCCCCCceeeceeeecccC----CCCceEEEEEecCCC
Q 019768 181 LLKVKVVKGINLAIRDMMSSDPYVVLRL--GQQT---VQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDHDTF 251 (336)
Q Consensus 181 ~L~V~v~~a~~L~~~~~~~~dPyv~i~l--~~~~---~rT~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~V~d~~~~ 251 (336)
.++|+|..+..+.........-||.+.+ |+.. .+|....-+.++.|||.+.|++.- ....|.|.||+...-
T Consensus 11 ~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~~ 90 (178)
T cd08399 11 KFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKAP 90 (178)
T ss_pred CEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEecC
Confidence 4667777765332221112335565544 4432 256655567789999998888743 346799999986321
Q ss_pred C----------------CCCeeEEEEEeCccc
Q 019768 252 S----------------ADDIMGEAEIDIQPL 267 (336)
Q Consensus 252 ~----------------~dd~iG~~~i~l~~l 267 (336)
. .+..||.+.+.|-+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~ 122 (178)
T cd08399 91 ALSSKKSAESPSSESKGKHQLLYYVNLLLIDH 122 (178)
T ss_pred cccccccccccccccccccceEEEEEEEEEcC
Confidence 1 256788899888764
No 157
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=92.13 E-value=0.73 Score=37.87 Aligned_cols=54 Identities=17% Similarity=0.311 Sum_probs=39.7
Q ss_pred EeeeeCCC-CCceeeceeeeccc--C--CCCceEEEEEecCCCCCC----CeeEEEEEeCccc
Q 019768 214 QTTIVKSN-LNPVWNEELMLSVP--Q--EYGPVKLEVFDHDTFSAD----DIMGEAEIDIQPL 267 (336)
Q Consensus 214 rT~~~~~t-~nP~W~e~f~f~v~--~--~~~~L~v~V~d~~~~~~d----d~iG~~~i~l~~l 267 (336)
.|....-+ .++.|+|.+.|++. + ....|.|+||+.+..... ..||.+.++|-+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 55555555 79999999888863 2 456799999998775554 6999999999775
No 158
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=92.02 E-value=2 Score=36.52 Aligned_cols=69 Identities=16% Similarity=0.271 Sum_probs=52.3
Q ss_pred CCCcEEEEEECCeEE-EeeeeCC--CCCceeeceeeecccCCCCceEEEEEecCCCCCCCeeEEEEEeCcccc
Q 019768 199 SSDPYVVLRLGQQTV-QTTIVKS--NLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLL 268 (336)
Q Consensus 199 ~~dPyv~i~l~~~~~-rT~~~~~--t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~iG~~~i~l~~l~ 268 (336)
...-|+++.++++.. +|+...- ...-.|+|.|.+.+....+.|.|+||.... ..+.+|+.+.+|+-...
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGST 107 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCc
Confidence 346788998877654 5544333 344567899999987766889999999887 57899999999987653
No 159
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=91.80 E-value=2.3 Score=36.87 Aligned_cols=54 Identities=19% Similarity=0.351 Sum_probs=41.9
Q ss_pred EEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCCCCC--CCeeEEEEEeCc
Q 019768 212 TVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTFSA--DDIMGEAEIDIQ 265 (336)
Q Consensus 212 ~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~~~--dd~iG~~~i~l~ 265 (336)
.++|-+...+.+|.|+|++.+.++. ....|.|++++...-.+ ...+|-+-+||-
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 5689999999999999999999876 45678888887543221 257899989884
No 160
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=89.72 E-value=4.8 Score=34.99 Aligned_cols=55 Identities=9% Similarity=0.223 Sum_probs=42.2
Q ss_pred eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCCC----CCCCeeEEEEEeCc
Q 019768 211 QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTF----SADDIMGEAEIDIQ 265 (336)
Q Consensus 211 ~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~----~~dd~iG~~~i~l~ 265 (336)
..++|-+...+.+|.|+|++.+.++. ....|.|++++...- .....+|-+-+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 35788898999999999999999876 456789999875421 12247898888884
No 161
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=89.22 E-value=1.1 Score=38.57 Aligned_cols=55 Identities=15% Similarity=0.268 Sum_probs=34.0
Q ss_pred EEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCCCCC---CCeeEEEEEeCcc
Q 019768 212 TVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTFSA---DDIMGEAEIDIQP 266 (336)
Q Consensus 212 ~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~~~---dd~iG~~~i~l~~ 266 (336)
.+.|.+...+.+|.|+|+|.+.++. ....|.|++++...-.. ...+|.+.+||-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 4578888889999999999999876 44678999998554221 1699999999876
No 162
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=88.99 E-value=0.81 Score=45.47 Aligned_cols=58 Identities=26% Similarity=0.545 Sum_probs=47.8
Q ss_pred EEeeeeCCCCCceeeceeeecccC-CCCceEEEEEecCC----CCCCCeeEEEEEeCcccccc
Q 019768 213 VQTTIVKSNLNPVWNEELMLSVPQ-EYGPVKLEVFDHDT----FSADDIMGEAEIDIQPLLTS 270 (336)
Q Consensus 213 ~rT~~~~~t~nP~W~e~f~f~v~~-~~~~L~v~V~d~~~----~~~dd~iG~~~i~l~~l~~~ 270 (336)
.+|.++.+.+||.|.+.|.+...- ..+.|++.++|-+. +..++|+|++...+..+...
T Consensus 43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~ 105 (529)
T KOG1327|consen 43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSS 105 (529)
T ss_pred cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhh
Confidence 489999999999999998877654 55789999998664 35678999999999988754
No 163
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=88.88 E-value=3.6 Score=31.18 Aligned_cols=63 Identities=19% Similarity=0.314 Sum_probs=44.6
Q ss_pred CCcEEEEEECCeEE-EeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCeeEEEEEeCccc
Q 019768 200 SDPYVVLRLGQQTV-QTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPL 267 (336)
Q Consensus 200 ~dPyv~i~l~~~~~-rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~iG~~~i~l~~l 267 (336)
.+-.+++.+++... +|.-. .-.+..|++.|.|.+.. ...|.|.||-+|- ..+.|...+.|++.
T Consensus 9 ~eV~avLklDn~~VgqT~Wk-~~s~q~WDQ~Fti~LdR-sRELEI~VywrD~---RslCav~~lrLEd~ 72 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWK-PKSNQAWDQSFTLELER-SRELEIAVYWRDW---RSLCAVKFLKLEDE 72 (98)
T ss_pred cceEEEEEEcCeEEeecccc-ccccccccceeEEEeec-ccEEEEEEEEecc---hhhhhheeeEhhhh
Confidence 36677888877554 45433 33678899999999865 4689999998764 24667777777764
No 164
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=84.73 E-value=5.9 Score=30.39 Aligned_cols=68 Identities=19% Similarity=0.250 Sum_probs=42.0
Q ss_pred EEEEEEeeeecccCCCC-CCCcEEEEEE--CCeE----EEeeeeCCCCCceeeceeeecccC----CCCceEEEEEecC
Q 019768 182 LKVKVVKGINLAIRDMM-SSDPYVVLRL--GQQT----VQTTIVKSNLNPVWNEELMLSVPQ----EYGPVKLEVFDHD 249 (336)
Q Consensus 182 L~V~v~~a~~L~~~~~~-~~dPyv~i~l--~~~~----~rT~~~~~t~nP~W~e~f~f~v~~----~~~~L~v~V~d~~ 249 (336)
+.+.+....+....... ..+-||.+.+ |++. ..|..+.-...+.|||...|++.- ....|.|+||+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 34455555554433322 2377887765 5543 355554446669999999888643 3467899999854
No 165
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=84.73 E-value=11 Score=31.93 Aligned_cols=76 Identities=21% Similarity=0.315 Sum_probs=48.8
Q ss_pred EEEeeeecccCCCCCCCcEEEEEE----------CCe-EEEeeeeCC-----CCCceeeceeeecccC----CCCceEEE
Q 019768 185 KVVKGINLAIRDMMSSDPYVVLRL----------GQQ-TVQTTIVKS-----NLNPVWNEELMLSVPQ----EYGPVKLE 244 (336)
Q Consensus 185 ~v~~a~~L~~~~~~~~dPyv~i~l----------~~~-~~rT~~~~~-----t~nP~W~e~f~f~v~~----~~~~L~v~ 244 (336)
.|..|.+.. ..+-||+..+ +.. .-.|.+... +..-.|+.-|++.+.. .-..|.|+
T Consensus 7 ~I~~a~~f~-----~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l~ 81 (168)
T PF07162_consen 7 EIESAEGFE-----EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVLQ 81 (168)
T ss_pred EEEEEECCC-----CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEEE
Confidence 355665432 2356777766 223 345555543 3346799877776643 12468999
Q ss_pred EEecCCCCCCCeeEEEEEeCc
Q 019768 245 VFDHDTFSADDIMGEAEIDIQ 265 (336)
Q Consensus 245 V~d~~~~~~dd~iG~~~i~l~ 265 (336)
||..|..+++.+.|-..+.|-
T Consensus 82 V~~~D~~gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 82 VYSLDSWGRDRVEGYGFCHLP 102 (168)
T ss_pred EEEEcccCCeEEeEEeEEEeC
Confidence 999999999999888766653
No 166
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=82.88 E-value=0.98 Score=28.58 Aligned_cols=34 Identities=12% Similarity=0.287 Sum_probs=28.9
Q ss_pred CCCCCcCCCCCCCCeEEeeeceEEcccchhh-hcc
Q 019768 31 DNRICADCGAPDPKWASANIGVFICLKCCGV-HRS 64 (336)
Q Consensus 31 ~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~-hr~ 64 (336)
.+..|..|+.....+.+.+=++++|..|... |+.
T Consensus 2 ~~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~ 36 (42)
T PF00643_consen 2 QEPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG 36 (42)
T ss_dssp SSSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT
T ss_pred cCccCccCCccceEEEecCCCCccCccCCCCCCCC
Confidence 3568999998878899999999999999987 877
No 167
>PRK12495 hypothetical protein; Provisional
Probab=82.09 E-value=1.1 Score=39.24 Aligned_cols=37 Identities=35% Similarity=0.641 Sum_probs=28.2
Q ss_pred HHHHHHHhC---CCCCCCcCCCCCCCCeEEeeeceEEcccchhh
Q 019768 21 GRLKDLLLQ---RDNRICADCGAPDPKWASANIGVFICLKCCGV 61 (336)
Q Consensus 21 ~~l~~~~~~---~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~ 61 (336)
+++.+||.+ ..+..|-+||.+=|. + -|+.+|..|..+
T Consensus 28 ~~ma~lL~~gatmsa~hC~~CG~PIpa---~-pG~~~Cp~CQ~~ 67 (226)
T PRK12495 28 ERMSELLLQGATMTNAHCDECGDPIFR---H-DGQEFCPTCQQP 67 (226)
T ss_pred HHHHHHHHhhcccchhhcccccCcccC---C-CCeeECCCCCCc
Confidence 445555554 568999999999883 2 699999999755
No 168
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=82.06 E-value=1.2 Score=27.59 Aligned_cols=26 Identities=31% Similarity=0.889 Sum_probs=22.6
Q ss_pred CCCCCCcCCCCCCCCeEEeeeceEEcccc
Q 019768 30 RDNRICADCGAPDPKWASANIGVFICLKC 58 (336)
Q Consensus 30 ~~N~~C~dC~~~~p~w~s~~~g~f~C~~C 58 (336)
..|..|..|++. |...+=|-+.|.+|
T Consensus 6 ~~~~~C~~C~~~---~~~~~dG~~yC~~c 31 (36)
T PF11781_consen 6 GPNEPCPVCGSR---WFYSDDGFYYCDRC 31 (36)
T ss_pred cCCCcCCCCCCe---EeEccCCEEEhhhC
Confidence 346679999997 88899999999999
No 169
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=81.21 E-value=5.3 Score=34.14 Aligned_cols=53 Identities=15% Similarity=0.295 Sum_probs=39.4
Q ss_pred EEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCCC-----CCCCeeEEEEEeCcc
Q 019768 213 VQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTF-----SADDIMGEAEIDIQP 266 (336)
Q Consensus 213 ~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~-----~~dd~iG~~~i~l~~ 266 (336)
++|-+..+ .+|.|+|+|.+.++. ....|.|++++-..- .....+|-+.+||-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 34444444 999999999998865 456789999985532 235689999999865
No 170
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=79.87 E-value=0.18 Score=50.52 Aligned_cols=82 Identities=15% Similarity=0.198 Sum_probs=58.9
Q ss_pred cceeEEEEEEEEEEEeeeecccC--CC--C-CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeecccC--CCCceEEEE
Q 019768 173 VGMVEFIGLLKVKVVKGINLAIR--DM--M-SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVPQ--EYGPVKLEV 245 (336)
Q Consensus 173 ~g~~~~~g~L~V~v~~a~~L~~~--~~--~-~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~~--~~~~L~v~V 245 (336)
.|..++.|...++++.|.++++. +. . ..++++...++.+.++|+....+.+|+|||. .+...+ ....|...|
T Consensus 273 ~~~dd~~gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~ki 351 (975)
T KOG2419|consen 273 HDADDFTGIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKI 351 (975)
T ss_pred cccchhhhhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHHhhhc
Confidence 46777888888888888877542 11 1 6789999999999999999999999999996 555543 233455555
Q ss_pred EecCCCCCCC
Q 019768 246 FDHDTFSADD 255 (336)
Q Consensus 246 ~d~~~~~~dd 255 (336)
.+++.+..++
T Consensus 352 v~~~~~~lnd 361 (975)
T KOG2419|consen 352 VGYCELDLND 361 (975)
T ss_pred cccccccccc
Confidence 5555444334
No 171
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=79.21 E-value=6.7 Score=33.70 Aligned_cols=56 Identities=11% Similarity=0.229 Sum_probs=42.2
Q ss_pred eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCCCC------CCCeeEEEEEeCcc
Q 019768 211 QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTFS------ADDIMGEAEIDIQP 266 (336)
Q Consensus 211 ~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~~------~dd~iG~~~i~l~~ 266 (336)
....|.+...+.+|.|.|++.+.++. ....|.|++++-+.-. ....+|-+.+||-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 34678889999999999999998875 4567889998844211 13569999998854
No 172
>PRK00085 recO DNA repair protein RecO; Reviewed
Probab=77.42 E-value=1.4 Score=39.70 Aligned_cols=31 Identities=35% Similarity=0.686 Sum_probs=26.8
Q ss_pred CCCCCCCcCCCCCCC-CeEEeeeceEEcccch
Q 019768 29 QRDNRICADCGAPDP-KWASANIGVFICLKCC 59 (336)
Q Consensus 29 ~~~N~~C~dC~~~~p-~w~s~~~g~f~C~~C~ 59 (336)
.|.-..|+-||.+.. .|.+..-|.++|..|.
T Consensus 146 ~p~l~~C~~Cg~~~~~~~f~~~~gg~~c~~c~ 177 (247)
T PRK00085 146 GLDLDHCAVCGAPGDHRYFSPKEGGAVCSECG 177 (247)
T ss_pred ccchhhHhcCCCCCCceEEecccCCccccccc
Confidence 466679999998754 7889999999999997
No 173
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=77.22 E-value=9.2 Score=33.01 Aligned_cols=56 Identities=14% Similarity=0.281 Sum_probs=42.8
Q ss_pred eEEEeeeeCCCCCceeeceeeecccC---CCCceEEEEEecCCC---------CCCCeeEEEEEeCcc
Q 019768 211 QTVQTTIVKSNLNPVWNEELMLSVPQ---EYGPVKLEVFDHDTF---------SADDIMGEAEIDIQP 266 (336)
Q Consensus 211 ~~~rT~~~~~t~nP~W~e~f~f~v~~---~~~~L~v~V~d~~~~---------~~dd~iG~~~i~l~~ 266 (336)
....|.|...+.+|.|.|++.+.++. ....|.|+.|+.+.- .....+|-+.+||-.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 34678888899999999999988875 456789999986521 113578999999855
No 174
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=75.75 E-value=17 Score=28.33 Aligned_cols=66 Identities=24% Similarity=0.410 Sum_probs=34.2
Q ss_pred EEEEEE-CCeEEEeeeeCCCCCceeeceeeecccC--------CCCceEEEEEecCCCCCCCeeEEEEEeCcccccc
Q 019768 203 YVVLRL-GQQTVQTTIVKSNLNPVWNEELMLSVPQ--------EYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTS 270 (336)
Q Consensus 203 yv~i~l-~~~~~rT~~~~~t~nP~W~e~f~f~v~~--------~~~~L~v~V~d~~~~~~dd~iG~~~i~l~~l~~~ 270 (336)
||.+.+ +-..+.|.++. +.+|.+|-+-.|.+.. ....+.|+++.--. .....+|.+.+++..+++.
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~ 76 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLES 76 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH-
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcC
Confidence 455555 33455666665 8999999888887753 23578999988653 3467999999999998743
No 175
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=72.95 E-value=4.8 Score=42.40 Aligned_cols=82 Identities=17% Similarity=0.257 Sum_probs=63.4
Q ss_pred CCcEEEEEECCeE-EEeeeeCCC-CCceeeceeeecccCCCCceEEEEEecCCCCCCCeeEEEEEeCcccccccccCCCC
Q 019768 200 SDPYVVLRLGQQT-VQTTIVKSN-LNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQPLLTSALAFGDP 277 (336)
Q Consensus 200 ~dPyv~i~l~~~~-~rT~~~~~t-~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~iG~~~i~l~~l~~~~~~~~~~ 277 (336)
.++|+.+.+.... .+|....+. .+|.|.+.|...+......+.+.+-+.+..+...++|.+.+++..++.+
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~------- 210 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSG------- 210 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhcc-------
Confidence 4889998886654 467777776 7899999998888777678889988888776578999999999888643
Q ss_pred CccCceeeceeeecCC
Q 019768 278 EMFGNMQIGKWLKSDD 293 (336)
Q Consensus 278 ~~~~~~~~~~wf~l~~ 293 (336)
..++.||+..+
T Consensus 211 -----~~~~~~~~Il~ 221 (887)
T KOG1329|consen 211 -----HRIGGWFPILD 221 (887)
T ss_pred -----ccccceeeeec
Confidence 45677887433
No 176
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=71.62 E-value=2.4 Score=27.17 Aligned_cols=25 Identities=24% Similarity=0.731 Sum_probs=19.1
Q ss_pred CCcCCCCCCCCeEEeeeceEEcccch
Q 019768 34 ICADCGAPDPKWASANIGVFICLKCC 59 (336)
Q Consensus 34 ~C~dC~~~~p~w~s~~~g~f~C~~C~ 59 (336)
.|..||+.. .-.--..|-++|..|-
T Consensus 2 ~Cp~Cg~~~-~~~D~~~g~~vC~~CG 26 (43)
T PF08271_consen 2 KCPNCGSKE-IVFDPERGELVCPNCG 26 (43)
T ss_dssp SBTTTSSSE-EEEETTTTEEEETTT-
T ss_pred CCcCCcCCc-eEEcCCCCeEECCCCC
Confidence 589999966 3444568999999993
No 177
>TIGR00613 reco DNA repair protein RecO. All proteins in this family for which functions are known are DNA binding proteins that are involved in the initiation of recombination or recombinational repair.
Probab=71.56 E-value=3.3 Score=37.01 Aligned_cols=33 Identities=27% Similarity=0.517 Sum_probs=27.6
Q ss_pred CCCCCCCcCCCCCCC-CeEEeeeceEEcccchhh
Q 019768 29 QRDNRICADCGAPDP-KWASANIGVFICLKCCGV 61 (336)
Q Consensus 29 ~~~N~~C~dC~~~~p-~w~s~~~g~f~C~~C~~~ 61 (336)
.|.-..|+.||+.++ .+.+..-|.|+|..|++.
T Consensus 144 ~p~l~~C~~cg~~~~~~~fs~~~gg~~C~~c~~~ 177 (241)
T TIGR00613 144 ALDLDKCAVCGSKEDLIYFSMTYGGALCRQCGEK 177 (241)
T ss_pred CcccCccCCCCCcCCCceEchhcCeEEChhhCcc
Confidence 467789999998544 688999999999999764
No 178
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=70.84 E-value=0.92 Score=27.66 Aligned_cols=27 Identities=30% Similarity=0.730 Sum_probs=16.6
Q ss_pred CCCcCCCCC-CCCeEEeeeceEEcccch
Q 019768 33 RICADCGAP-DPKWASANIGVFICLKCC 59 (336)
Q Consensus 33 ~~C~dC~~~-~p~w~s~~~g~f~C~~C~ 59 (336)
..|.+|+.+ .-+|..-+|+.-||.+|.
T Consensus 4 ~~C~eC~~~f~dSyL~~~F~~~VCD~CR 31 (34)
T PF01286_consen 4 PKCDECGKPFMDSYLLNNFDLPVCDKCR 31 (34)
T ss_dssp EE-TTT--EES-SSCCCCTS-S--TTT-
T ss_pred chHhHhCCHHHHHHHHHhCCcccccccc
Confidence 469999986 557999999999999994
No 179
>PRK11019 hypothetical protein; Provisional
Probab=61.93 E-value=0.76 Score=34.58 Aligned_cols=49 Identities=18% Similarity=0.388 Sum_probs=30.9
Q ss_pred hHHHHHHHHhC----CCCCCCcCCCCCCC--CeEEeeeceEEcccchhhhccCCCc
Q 019768 19 GKGRLKDLLLQ----RDNRICADCGAPDP--KWASANIGVFICLKCCGVHRSLGTH 68 (336)
Q Consensus 19 ~~~~l~~~~~~----~~N~~C~dC~~~~p--~w~s~~~g~f~C~~C~~~hr~lg~~ 68 (336)
....|...+.+ +.-..|.|||.+=| .+--+ .++-.|+.|...+-..+.|
T Consensus 19 ~~~aI~~a~~r~~~g~syg~C~~CG~~Ip~~Rl~A~-P~a~~Cv~Cq~~~E~~~k~ 73 (88)
T PRK11019 19 VEDAIARARSELPRGESLTECEECGEPIPEARRKAI-PGVRLCVACQQEKDLQQAA 73 (88)
T ss_pred HHHHHHHHHhhcccCCcCCeeCcCCCcCcHHHHhhc-CCccccHHHHHHHHHHHhH
Confidence 34455544433 23569999999755 33333 3778899999987555444
No 180
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=61.20 E-value=12 Score=27.89 Aligned_cols=39 Identities=28% Similarity=0.628 Sum_probs=30.1
Q ss_pred hHHHHHHHHh-CCCCCCCcCCCCCCCCeEEeeeceEEcccch
Q 019768 19 GKGRLKDLLL-QRDNRICADCGAPDPKWASANIGVFICLKCC 59 (336)
Q Consensus 19 ~~~~l~~~~~-~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~ 59 (336)
.++.++++.. ..+--.|-.|+.+ .---+..||+.|..|-
T Consensus 21 ~Rrrv~~ie~~~~~~~~Cp~C~~~--~VkR~a~GIW~C~kCg 60 (89)
T COG1997 21 LRRRVKEIEAQQRAKHVCPFCGRT--TVKRIATGIWKCRKCG 60 (89)
T ss_pred HHHHHHHHHHHHhcCCcCCCCCCc--ceeeeccCeEEcCCCC
Confidence 4666777664 4566799999997 4556789999999994
No 181
>COG1381 RecO Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=59.92 E-value=4.7 Score=36.56 Aligned_cols=30 Identities=37% Similarity=0.799 Sum_probs=26.3
Q ss_pred CCCCCCcCCCCCCC-CeEEeeeceEEcccch
Q 019768 30 RDNRICADCGAPDP-KWASANIGVFICLKCC 59 (336)
Q Consensus 30 ~~N~~C~dC~~~~p-~w~s~~~g~f~C~~C~ 59 (336)
|.=..||.||++.+ ..+|.-.|-++|.+|+
T Consensus 152 ~~l~~Ca~cg~~~~~~~~s~~~~~~~C~~~~ 182 (251)
T COG1381 152 PNLTSCARCGTPVDPVYFSPKSGGFLCSKCA 182 (251)
T ss_pred cchHHHhCcCCcCCCcceeeccCcccchhcc
Confidence 45579999999754 7999999999999998
No 182
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=59.73 E-value=87 Score=29.78 Aligned_cols=66 Identities=14% Similarity=0.268 Sum_probs=48.2
Q ss_pred CCcEEEEEECCeEEEeeeeCCCCCc--eeeceeeecccCCCCceEEEEEecCCCCCCCeeEEEEEeCcc
Q 019768 200 SDPYVVLRLGQQTVQTTIVKSNLNP--VWNEELMLSVPQEYGPVKLEVFDHDTFSADDIMGEAEIDIQP 266 (336)
Q Consensus 200 ~dPyv~i~l~~~~~rT~~~~~t~nP--~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~iG~~~i~l~~ 266 (336)
..-|+.+..|....+|..+.-+..- .-.++....+..-...|+|.||-.... +...||.+.+.+..
T Consensus 74 khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLv-kk~hIgdI~InIn~ 141 (508)
T PTZ00447 74 KHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLT-KKVHIGQIKIDINA 141 (508)
T ss_pred eeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEecccc-ceeEEEEEEecccH
Confidence 4678899999988888665543322 344556666666667899999987664 66899999999876
No 183
>TIGR02419 C4_traR_proteo phage/conjugal plasmid C-4 type zinc finger protein, TraR family. Members of this family are putative C4-type zinc finger proteins found almost exclusively in prophage regions, actual phage, or conjugal transfer regions of the Proteobactia. This small protein (about 70 amino acids) appears homologous to but is smaller than DksA (DnaK suppressor protein), found to be critical for regulating transcription of ribosomal RNA.
Probab=56.55 E-value=2.7 Score=29.55 Aligned_cols=33 Identities=36% Similarity=0.702 Sum_probs=23.0
Q ss_pred CCCCCCCcCCCCCCC--CeEEeeeceEEcccchhhh
Q 019768 29 QRDNRICADCGAPDP--KWASANIGVFICLKCCGVH 62 (336)
Q Consensus 29 ~~~N~~C~dC~~~~p--~w~s~~~g~f~C~~C~~~h 62 (336)
.++...|.|||.+=| .+. ...|+..|+.|...+
T Consensus 28 ~~s~g~C~~Cg~~Ip~~Rl~-a~p~~~~Cv~Cq~~~ 62 (63)
T TIGR02419 28 GPSLRECEDCGEPIPEARRE-ALPGVTRCVSCQEIL 62 (63)
T ss_pred CCCCCeeccCCCcChHHHHh-hcCCcCCcHHHHhhc
Confidence 456789999999755 222 234778899997654
No 184
>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG].
Probab=53.75 E-value=12 Score=25.00 Aligned_cols=37 Identities=27% Similarity=0.679 Sum_probs=28.6
Q ss_pred CCCCCcCCCCC-CCCeEEeeece-EEcccchhhhccCCC
Q 019768 31 DNRICADCGAP-DPKWASANIGV-FICLKCCGVHRSLGT 67 (336)
Q Consensus 31 ~N~~C~dC~~~-~p~w~s~~~g~-f~C~~C~~~hr~lg~ 67 (336)
....|..|+.. .|.|=.-..|- ++|-.|.-..+..|.
T Consensus 2 ~~~~C~~C~~~~T~~WR~g~~g~~~LCnaCgl~~~k~~~ 40 (52)
T smart00401 2 SGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGG 40 (52)
T ss_pred CCCCcCCCCCCCCCccccCCCCCCcEeecccHHHHHcCC
Confidence 45789999974 77898888886 999999766655443
No 185
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=52.30 E-value=9.1 Score=25.06 Aligned_cols=26 Identities=31% Similarity=0.652 Sum_probs=19.6
Q ss_pred CCcCCCCCCCCeEEeeeceEEcccchh
Q 019768 34 ICADCGAPDPKWASANIGVFICLKCCG 60 (336)
Q Consensus 34 ~C~dC~~~~p~w~s~~~g~f~C~~C~~ 60 (336)
.|.=|+...+. --.=+|.|||..|-.
T Consensus 1 ~CiiC~~~~~~-GI~I~~~fIC~~CE~ 26 (46)
T PF10764_consen 1 KCIICGKEKEE-GIHIYGKFICSDCEK 26 (46)
T ss_pred CeEeCCCcCCC-CEEEECeEehHHHHH
Confidence 47788887776 444579999999953
No 186
>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....
Probab=52.20 E-value=9.1 Score=23.48 Aligned_cols=31 Identities=26% Similarity=0.748 Sum_probs=21.7
Q ss_pred CcCCCCC-CCCeEEeeeceE-EcccchhhhccC
Q 019768 35 CADCGAP-DPKWASANIGVF-ICLKCCGVHRSL 65 (336)
Q Consensus 35 C~dC~~~-~p~w~s~~~g~f-~C~~C~~~hr~l 65 (336)
|+.|++. .|.|=....|-. ||-.|--.+|..
T Consensus 1 C~~C~tt~t~~WR~~~~g~~~LCn~Cg~~~kk~ 33 (36)
T PF00320_consen 1 CSNCGTTETPQWRRGPNGNRTLCNACGLYYKKY 33 (36)
T ss_dssp -TTT--ST-SSEEEETTSEE-EEHHHHHHHHHH
T ss_pred CcCCcCCCCchhhcCCCCCCHHHHHHHHHHHHh
Confidence 8899984 889998888887 999997665543
No 187
>PF01258 zf-dskA_traR: Prokaryotic dksA/traR C4-type zinc finger; InterPro: IPR000962 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents domains identified in zinc finger-containing members of the DksA/TraR family. DksA is a critical component of the rRNA transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP. In delta-dksA mutants, rRNA promoters are unresponsive to changes in amino acid availability, growth rate, or growth phase. In vitro, DksA binds to RNAP, reduces open complex lifetime, inhibits rRNA promoter activity, and amplifies effects of ppGpp and the initiating NTP on rRNA transcription [, ]. The dksA gene product suppresses the temperature-sensitive growth and filamentation of a dnaK deletion mutant of Escherichia coli. Gene knockout [] and deletion [] experiments have shown the gene to be non-essential, mutations causing a mild sensitivity to UV light, but not affecting DNA recombination []. In Pseudomonas aeruginosa, dksA is a novel regulator involved in the post-transcriptional control of extracellular virulence factor production []. The proteins contain a C-terminal region thought to fold into a 4-cysteine zinc finger. Other proteins found to contain a similar zinc finger domain include: the traR gene products encoded on the E. coli F and R100 plasmids [, ] the traR gene products encoded on Salmonella spp. plasmids pED208 and pSLT the dnaK suppressor hypothetical proteins from bacteria and bacteriophage FHL4, LIM proteins from Homo sapiens (Human) and Mus musculus (Mouse) [] More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2GVI_A 2KQ9_A 2KGO_A 1TJL_I.
Probab=51.64 E-value=1 Score=27.70 Aligned_cols=30 Identities=37% Similarity=0.804 Sum_probs=16.6
Q ss_pred CCCcCCCCCCC-CeEEeeeceEEcccchhhh
Q 019768 33 RICADCGAPDP-KWASANIGVFICLKCCGVH 62 (336)
Q Consensus 33 ~~C~dC~~~~p-~w~s~~~g~f~C~~C~~~h 62 (336)
..|.+||.+=| .=.-+--+..+|+.|+..|
T Consensus 4 g~C~~CGe~I~~~Rl~~~p~~~~C~~C~~~~ 34 (36)
T PF01258_consen 4 GICEDCGEPIPEERLVAVPGATLCVECQERR 34 (36)
T ss_dssp SB-TTTSSBEEHHHHHHCTTECS-HHHHHHH
T ss_pred CCccccCChHHHHHHHhCCCcEECHHHhCcc
Confidence 35999998522 1111223778899998765
No 188
>cd07171 NR_DBD_ER DNA-binding domain of estrogen receptors (ER) is composed of two C4-type zinc fingers. DNA-binding domain of estrogen receptors (ER) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. ER interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. Estrogen receptor is a transcription regulator that mediates the biological effects of hormone estrogen. The binding of estrogen to the receptor triggers the dimerization and the binding of the receptor dimer to estrogen response element, which is a palindromic inverted repeat: 5'GGTCAnnnTGACC-3', of target genes. Through ER, estrogen regulates development, reproduction and homeostasis. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, ER has a central well-conserved DNA binding domain (DBD), a variable N-terminal domain, a non-conserv
Probab=51.62 E-value=9.7 Score=28.19 Aligned_cols=31 Identities=26% Similarity=0.612 Sum_probs=25.5
Q ss_pred CCCCCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019768 31 DNRICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 31 ~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
+|..|.=||.+. ....||++.|..|++..|-
T Consensus 2 ~~~~C~VCg~~~---~g~hyGv~sC~aC~~FFRR 32 (82)
T cd07171 2 DTHFCAVCSDYA---SGYHYGVWSCEGCKAFFKR 32 (82)
T ss_pred CCCCCeecCCcC---cceEECceeehhhHHhHHH
Confidence 567899999754 3579999999999998864
No 189
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=50.87 E-value=11 Score=26.61 Aligned_cols=25 Identities=32% Similarity=0.805 Sum_probs=21.8
Q ss_pred CCCCcCCCCCCCCeEEeeeceEEcccc
Q 019768 32 NRICADCGAPDPKWASANIGVFICLKC 58 (336)
Q Consensus 32 N~~C~dC~~~~p~w~s~~~g~f~C~~C 58 (336)
-+.|..||..... ..+-.+|.|..|
T Consensus 28 Sq~C~~CG~~~~~--~~~~r~~~C~~C 52 (69)
T PF07282_consen 28 SQTCPRCGHRNKK--RRSGRVFTCPNC 52 (69)
T ss_pred ccCccCccccccc--ccccceEEcCCC
Confidence 4789999998777 778889999999
No 190
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=50.08 E-value=21 Score=23.03 Aligned_cols=34 Identities=21% Similarity=0.508 Sum_probs=24.8
Q ss_pred HHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccch
Q 019768 25 DLLLQRDNRICADCGAPDPKWASANIGVFICLKCC 59 (336)
Q Consensus 25 ~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~ 59 (336)
+-++.|+.-.|.-||+....+.. +.+.|-|-.|.
T Consensus 11 ~~~RW~~g~~CP~Cg~~~~~~~~-~~~~~~C~~C~ 44 (46)
T PF12760_consen 11 EEIRWPDGFVCPHCGSTKHYRLK-TRGRYRCKACR 44 (46)
T ss_pred HHhcCCCCCCCCCCCCeeeEEeC-CCCeEECCCCC
Confidence 34456777889999998554443 37999999984
No 191
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=49.41 E-value=1.4e+02 Score=24.55 Aligned_cols=69 Identities=16% Similarity=0.190 Sum_probs=51.8
Q ss_pred CCCcEEEEEECCeEEEeeeeCCCCCceeeceeeeccc-----------C--CCCceEEEEEecCCCCCCCeeEEEEEeCc
Q 019768 199 SSDPYVVLRLGQQTVQTTIVKSNLNPVWNEELMLSVP-----------Q--EYGPVKLEVFDHDTFSADDIMGEAEIDIQ 265 (336)
Q Consensus 199 ~~dPyv~i~l~~~~~rT~~~~~t~nP~W~e~f~f~v~-----------~--~~~~L~v~V~d~~~~~~dd~iG~~~i~l~ 265 (336)
+.|-|..+++-++.++|+......-=.++|.|.|.-. . +.+.+.++++.+..-. .+.++..+-...
T Consensus 19 ~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~~~-g~iLA~ye~n~r 97 (140)
T PF14909_consen 19 KGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVPPA-GEILAYYEENTR 97 (140)
T ss_pred CCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeCCC-CcEEEEEecccc
Confidence 4489999999999999988777666678898888621 1 3467889998876643 677888777777
Q ss_pred ccc
Q 019768 266 PLL 268 (336)
Q Consensus 266 ~l~ 268 (336)
+++
T Consensus 98 DfL 100 (140)
T PF14909_consen 98 DFL 100 (140)
T ss_pred ceE
Confidence 764
No 192
>COG1734 DksA DnaK suppressor protein [Signal transduction mechanisms]
Probab=46.81 E-value=2.9 Score=33.46 Aligned_cols=30 Identities=30% Similarity=0.720 Sum_probs=20.8
Q ss_pred CCcCCCCCCC-CeEEeeeceEEcccchhhhc
Q 019768 34 ICADCGAPDP-KWASANIGVFICLKCCGVHR 63 (336)
Q Consensus 34 ~C~dC~~~~p-~w~s~~~g~f~C~~C~~~hr 63 (336)
+|.+||.+=| .=.-.--++.+|+.|...|-
T Consensus 82 ~Ce~cG~~Ip~~RL~A~P~A~~Ci~cQ~~~E 112 (120)
T COG1734 82 ICEECGEPIPEARLEARPTARLCIECQERAE 112 (120)
T ss_pred chhccCCcCCHHHHhhCcchHHHHHHHHHHH
Confidence 7999999744 11223446788999988763
No 193
>PF13119 DUF3973: Domain of unknown function (DUF3973)
Probab=46.61 E-value=9.2 Score=23.93 Aligned_cols=13 Identities=23% Similarity=0.976 Sum_probs=10.6
Q ss_pred EEcccchhhhccC
Q 019768 53 FICLKCCGVHRSL 65 (336)
Q Consensus 53 f~C~~C~~~hr~l 65 (336)
|-|+.||.+|-.-
T Consensus 2 yYCi~Cs~~h~e~ 14 (41)
T PF13119_consen 2 YYCINCSEIHHEK 14 (41)
T ss_pred EEEEEhHHhHHhh
Confidence 6799999999653
No 194
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=46.55 E-value=19 Score=34.13 Aligned_cols=36 Identities=17% Similarity=0.404 Sum_probs=26.9
Q ss_pred HHHHHHHHh-CCCCCCCcCCCCCCCCeEEeeeceEEcccchhhh
Q 019768 20 KGRLKDLLL-QRDNRICADCGAPDPKWASANIGVFICLKCCGVH 62 (336)
Q Consensus 20 ~~~l~~~~~-~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~h 62 (336)
++.++..++ .|+| .|-.||.....|. ++|.+|.+.|
T Consensus 342 ~~~~~~~~~~~p~~-~c~~cg~~~~~~~------~~c~~c~~~~ 378 (389)
T PRK11788 342 RDLVGEQLKRKPRY-RCRNCGFTARTLY------WHCPSCKAWE 378 (389)
T ss_pred HHHHHHHHhCCCCE-ECCCCCCCCccce------eECcCCCCcc
Confidence 444544444 4554 5999999999997 7899999887
No 195
>smart00782 PhnA_Zn_Ribbon PhnA Zinc-Ribbon. This protein family includes an uncharacterised member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterised phosphonoacetate hydrolase designated PhnA.
Probab=45.82 E-value=12 Score=24.63 Aligned_cols=31 Identities=32% Similarity=0.739 Sum_probs=21.7
Q ss_pred CCCCCCcCCCCCCC--CeE-------EeeeceEEcccchh
Q 019768 30 RDNRICADCGAPDP--KWA-------SANIGVFICLKCCG 60 (336)
Q Consensus 30 ~~N~~C~dC~~~~p--~w~-------s~~~g~f~C~~C~~ 60 (336)
..+..|-=|++..+ .|. +..-.|++|..|.+
T Consensus 5 Rs~~kCELC~a~~~L~vy~Vpp~~~~~~d~~iliC~tC~~ 44 (47)
T smart00782 5 RCESKCELCGSDSPLVVYAVPPSSDVTADNSVMLCDTCHS 44 (47)
T ss_pred HcCCcccCcCCCCCceEEecCCCCCCCccceeeechHHHH
Confidence 34555999998754 222 34668999999975
No 196
>cd06968 NR_DBD_ROR DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers. DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. ROR interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. RORS are key regulators of many physiological processes during embryonic development. RORs bind as monomers to specific ROR response elements (ROREs) consisting of the consensus core motif AGGTCA preceded by a 5-bp A/T-rich sequence. There are three subtypes of retinoid-related orphan receptors (RORs), alpha, beta, and gamma, which differ only in N-terminal sequence and are distributed in distinct tissues. RORalpha plays a key role in the development of the cerebellum particularly in the regulation of the maturation and survival of Purkinje cells. RORbe
Probab=45.30 E-value=14 Score=28.13 Aligned_cols=31 Identities=29% Similarity=0.640 Sum_probs=25.5
Q ss_pred CCCCCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019768 31 DNRICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 31 ~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
++..|.=||.+. ....||++.|..|++..|-
T Consensus 4 ~~~~C~VCg~~~---~g~hyGv~sC~aC~~FFRR 34 (95)
T cd06968 4 EVIPCKICGDKS---SGIHYGVITCEGCKGFFRR 34 (95)
T ss_pred cccCCcccCCcC---cceEECceeehhhHHhhHH
Confidence 567899999755 3468999999999998874
No 197
>cd07173 NR_DBD_AR DNA-binding domain of androgen receptor (AR) is composed of two C4-type zinc fingers. DNA-binding domain of androgen receptor (AR) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. To regulate gene expression, AR interacts with a palindrome of the core sequence 5'-TGTTCT-3' with a 3-bp spacer. It also binds to the direct repeat 5'-TGTTCT-3' hexamer in some androgen controlled genes. AR is activated by the androgenic hormones, testosterone or dihydrotestosterone, which are responsible for primary and for secondary male characteristics, respectively. The primary mechanism of action of ARs is by direct regulation of gene transcription. The binding of androgen results in a conformational change in the androgen receptor which causes its transport from the cytosol into the cell nucleus, and dimerization. The receptor dimer binds to a hormone response element of AR regulated genes and modul
Probab=44.07 E-value=14 Score=27.42 Aligned_cols=32 Identities=19% Similarity=0.518 Sum_probs=25.6
Q ss_pred CCCCCCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019768 30 RDNRICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 30 ~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
|..+.|.=||.+.- ...||+..|..|++..|-
T Consensus 1 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 32 (82)
T cd07173 1 PPQKTCLICGDEAS---GCHYGALTCGSCKVFFKR 32 (82)
T ss_pred CCCCCCeecCCcCc---ceEECcchhhhHHHHHHH
Confidence 34567999997553 578999999999998864
No 198
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=43.44 E-value=40 Score=26.35 Aligned_cols=56 Identities=13% Similarity=-0.002 Sum_probs=31.9
Q ss_pred CCceEEEEEecCC---CCCCCeeEEEEEeCcccccccccC--CCCCccCceeeceeeecCC
Q 019768 238 YGPVKLEVFDHDT---FSADDIMGEAEIDIQPLLTSALAF--GDPEMFGNMQIGKWLKSDD 293 (336)
Q Consensus 238 ~~~L~v~V~d~~~---~~~dd~iG~~~i~l~~l~~~~~~~--~~~~~~~~~~~~~wf~l~~ 293 (336)
..+|.+.+++-.. .....+||.+.+++.+....-... ..+.......+.+-|+|.+
T Consensus 28 ~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~ 88 (112)
T PF14924_consen 28 SFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFD 88 (112)
T ss_pred CCceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeec
Confidence 3467776665332 345679999999998876432111 1112334455666676544
No 199
>cd07170 NR_DBD_ERR DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers. DNA-binding domain of estrogen related receptors (ERRs) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. ERR interacts with the palindromic inverted repeat, 5'GGTCAnnnTGACC-3', upstream of the target gene and modulates the rate of transcriptional initiation. The estrogen receptor-related receptors (ERRs) are transcriptional regulators, which are closely related to the estrogen receptor (ER) family. Although ERRs lack the ability to bind to estrogen and are so-called orphan receptors, they share target genes, co-regulators and promoters with the estrogen receptor (ER) family. By targeting the same set of genes, ERRs seem to interfere with the classic ER-mediated estrogen response in various ways. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription
Probab=42.78 E-value=15 Score=28.09 Aligned_cols=30 Identities=27% Similarity=0.618 Sum_probs=24.2
Q ss_pred CCCCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019768 32 NRICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 32 N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
+..|.=||.+.. ...||++.|..|++..|-
T Consensus 4 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (97)
T cd07170 4 KRLCLVCGDIAS---GYHYGVASCEACKAFFKR 33 (97)
T ss_pred CCCCeecCCcCc---ceEECceeehhhhHHHHH
Confidence 356999997553 468999999999998864
No 200
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=42.42 E-value=13 Score=24.08 Aligned_cols=22 Identities=32% Similarity=0.815 Sum_probs=16.6
Q ss_pred CCcCCCCCCCCeEEeeeceEEcccc
Q 019768 34 ICADCGAPDPKWASANIGVFICLKC 58 (336)
Q Consensus 34 ~C~dC~~~~p~w~s~~~g~f~C~~C 58 (336)
.|++||+..... ..+..-|..|
T Consensus 4 ~C~~Cg~~~~~~---~~~~irC~~C 25 (44)
T smart00659 4 ICGECGRENEIK---SKDVVRCREC 25 (44)
T ss_pred ECCCCCCEeecC---CCCceECCCC
Confidence 699999964432 4677889999
No 201
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=41.67 E-value=8.5 Score=23.45 Aligned_cols=30 Identities=23% Similarity=0.645 Sum_probs=15.0
Q ss_pred CCCcCCCCCCCCeEE---eeeceEEcccchhhhc
Q 019768 33 RICADCGAPDPKWAS---ANIGVFICLKCCGVHR 63 (336)
Q Consensus 33 ~~C~dC~~~~p~w~s---~~~g~f~C~~C~~~hr 63 (336)
+.|..||.+- ++.. =+.-=++|..|.-||-
T Consensus 1 kfC~~CG~~l-~~~ip~gd~r~R~vC~~Cg~IhY 33 (34)
T PF14803_consen 1 KFCPQCGGPL-ERRIPEGDDRERLVCPACGFIHY 33 (34)
T ss_dssp -B-TTT--B--EEE--TT-SS-EEEETTTTEEE-
T ss_pred CccccccChh-hhhcCCCCCccceECCCCCCEEe
Confidence 4688899862 2222 1445678999988873
No 202
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=41.07 E-value=11 Score=25.96 Aligned_cols=23 Identities=35% Similarity=0.811 Sum_probs=15.7
Q ss_pred CCCcCCCCCCCCeEEeeeceEEcccc
Q 019768 33 RICADCGAPDPKWASANIGVFICLKC 58 (336)
Q Consensus 33 ~~C~dC~~~~p~w~s~~~g~f~C~~C 58 (336)
-+|+|||+.+.- -.--++-|-+|
T Consensus 21 YiCgdC~~en~l---k~~D~irCReC 43 (62)
T KOG3507|consen 21 YICGDCGQENTL---KRGDVIRCREC 43 (62)
T ss_pred EEeccccccccc---cCCCcEehhhc
Confidence 479999998641 12236778888
No 203
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=40.97 E-value=38 Score=25.57 Aligned_cols=40 Identities=25% Similarity=0.560 Sum_probs=29.8
Q ss_pred ChHHHHHHHHh-CCCCCCCcCCCCCCCCeEEeeeceEEcccch
Q 019768 18 SGKGRLKDLLL-QRDNRICADCGAPDPKWASANIGVFICLKCC 59 (336)
Q Consensus 18 ~~~~~l~~~~~-~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~ 59 (336)
+.++++++|-. +..--.|.-||...-... ..||+-|..|-
T Consensus 21 slRK~v~kie~~q~a~y~CpfCgk~~vkR~--a~GIW~C~~C~ 61 (90)
T PTZ00255 21 SLRKQIKKIEISQHAKYFCPFCGKHAVKRQ--AVGIWRCKGCK 61 (90)
T ss_pred HHHHHHHHHHHHHhCCccCCCCCCCceeee--eeEEEEcCCCC
Confidence 45777777765 556679999997665444 45999999993
No 204
>PRK13715 conjugal transfer protein TraR; Provisional
Probab=39.54 E-value=4.7 Score=29.23 Aligned_cols=36 Identities=25% Similarity=0.596 Sum_probs=23.8
Q ss_pred CCCCcCCCCCCCC-eEEeeeceEEcccchhhhccCCC
Q 019768 32 NRICADCGAPDPK-WASANIGVFICLKCCGVHRSLGT 67 (336)
Q Consensus 32 N~~C~dC~~~~p~-w~s~~~g~f~C~~C~~~hr~lg~ 67 (336)
...|.|||.+=|. =.-.--|+..|+.|...+-.-+.
T Consensus 34 ~~~C~~Cg~~Ip~~Rl~a~p~~~~Cv~Cq~~~E~~~~ 70 (73)
T PRK13715 34 VYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRK 70 (73)
T ss_pred cccHhhcCCcCCHHHHhcCCCcCCCHHHHHHHHHHhc
Confidence 3589999997552 11223478889999887644333
No 205
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=39.27 E-value=8 Score=39.69 Aligned_cols=57 Identities=14% Similarity=0.113 Sum_probs=41.3
Q ss_pred CCCcEEEEEECCeEE-EeeeeCCCCCceeeceeeecccCCCCceEEEEEecCCCCCCCe
Q 019768 199 SSDPYVVLRLGQQTV-QTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHDTFSADDI 256 (336)
Q Consensus 199 ~~dPyv~i~l~~~~~-rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~~~~~dd~ 256 (336)
..+||+.+.+..... .+.+.+.+..|.|+++|.+.+... ..+.|.|+.......+.+
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~~-~~~~i~v~~~~~~~~~~~ 84 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVAG-GAKNIIVLLKSPDPKALS 84 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeecC-CceEEEEEecCCcchhhH
Confidence 458999888865443 555677799999999999997553 567888888654444433
No 206
>cd07160 NR_DBD_LXR DNA-binding domain of Liver X receptors (LXRs) family is composed of two C4-type zinc fingers. DNA-binding domain of Liver X receptors (LXRs) family is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. LXR interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. LXR operates as cholesterol sensor which protects cells from cholesterol overload by stimulating reverse cholesterol transport from peripheral tissues to the liver and its excretion in the bile. Oxidized cholesterol derivatives or oxysterols were identified as specific ligands for LXRs. LXR functions as a heterodimer with the retinoid X receptor (RXR) which may be activated by either LXR agonist or 9-cis retinoic acid, a specific RXR ligand. The LXR/RXR complex binds to a liver X receptor response element (LXRE) in the promoter region of target genes. The ideal LXRE seq
Probab=38.90 E-value=22 Score=27.43 Aligned_cols=31 Identities=29% Similarity=0.693 Sum_probs=25.5
Q ss_pred CCCCCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019768 31 DNRICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 31 ~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
.+..|.=|+.+.. ...||+..|..|++..|-
T Consensus 17 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 47 (101)
T cd07160 17 GNEVCSVCGDKAS---GFHYNVLSCEGCKGFFRR 47 (101)
T ss_pred CCCCCeecCCcCc---ceEECcceehhhhhhhhh
Confidence 4678999997543 469999999999998864
No 207
>cd06966 NR_DBD_CAR DNA-binding domain of constitutive androstane receptor (CAR) is composed of two C4-type zinc fingers. DNA-binding domain (DBD) of constitutive androstane receptor (CAR) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. CAR DBD interacts with CAR response element, a perfect repeat of two AGTTCA motifs with a 4 bp spacer upstream of the target gene, and modulates the rate of transcriptional initiation. The constitutive androstane receptor (CAR) is a ligand-regulated transcription factor that responds to a diverse array of chemically distinct ligands, including many endogenous compounds and clinical drugs. It functions as a heterodimer with RXR. The CAR/RXR heterodimer binds many common response elements in the promoter regions of a diverse set of target genes involved in the metabolism, transport, and ultimately, elimination of these molecules from the body. CAR is a closest mammalian
Probab=37.84 E-value=19 Score=27.39 Aligned_cols=29 Identities=28% Similarity=0.653 Sum_probs=22.8
Q ss_pred CCCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019768 33 RICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 33 ~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
+.|.=||.+.. ...||+..|..|++..|-
T Consensus 1 ~~C~VCg~~a~---g~hyGv~sC~aC~~FFRR 29 (94)
T cd06966 1 KICGVCGDKAL---GYNFNAITCESCKAFFRR 29 (94)
T ss_pred CCCeeCCCcCc---ceEECcceeeeehheehh
Confidence 35888887543 458999999999998765
No 208
>PHA00080 DksA-like zinc finger domain containing protein
Probab=37.64 E-value=9.2 Score=27.60 Aligned_cols=34 Identities=24% Similarity=0.628 Sum_probs=23.0
Q ss_pred CCCCCCcCCCCCCC--CeEEeeeceEEcccchhhhcc
Q 019768 30 RDNRICADCGAPDP--KWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 30 ~~N~~C~dC~~~~p--~w~s~~~g~f~C~~C~~~hr~ 64 (336)
++...|-|||.+=| .+.-+ .++..|+.|...+-.
T Consensus 29 ~~~~~C~~Cg~~Ip~~Rl~a~-P~~~~Cv~Cq~~~E~ 64 (72)
T PHA00080 29 PSATHCEECGDPIPEARREAV-PGCRTCVSCQEILEL 64 (72)
T ss_pred CCCCEecCCCCcCcHHHHHhC-CCccCcHHHHHHHHH
Confidence 44568999999744 33322 366779999987543
No 209
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=37.55 E-value=11 Score=30.80 Aligned_cols=34 Identities=32% Similarity=0.702 Sum_probs=25.5
Q ss_pred CCCCCCcCCCCCCCCeEEeeeceEEcc-cchhhhcc
Q 019768 30 RDNRICADCGAPDPKWASANIGVFICL-KCCGVHRS 64 (336)
Q Consensus 30 ~~N~~C~dC~~~~p~w~s~~~g~f~C~-~C~~~hr~ 64 (336)
|--..||-|| -...|.+++=|.-.|. .|-++|..
T Consensus 116 P~r~fCaVCG-~~S~ysC~~CG~kyCsv~C~~~Hne 150 (156)
T KOG3362|consen 116 PLRKFCAVCG-YDSKYSCVNCGTKYCSVRCLKTHNE 150 (156)
T ss_pred CcchhhhhcC-CCchhHHHhcCCceeechhhhhccc
Confidence 5567899999 5666888888887764 67777753
No 210
>PF14376 Haem_bd: Haem-binding domain
Probab=37.51 E-value=40 Score=27.47 Aligned_cols=26 Identities=19% Similarity=0.466 Sum_probs=19.8
Q ss_pred CChHHHHHHHHhCCCCCCCcCCCCCCCCeE
Q 019768 17 SSGKGRLKDLLLQRDNRICADCGAPDPKWA 46 (336)
Q Consensus 17 ~~~~~~l~~~~~~~~N~~C~dC~~~~p~w~ 46 (336)
....+.++.|++. -|.||++.++.|-
T Consensus 30 ~~~p~~v~~il~~----~CydCHSn~T~~P 55 (137)
T PF14376_consen 30 IKAPEEVKIILKN----SCYDCHSNNTRYP 55 (137)
T ss_pred ccchHHHHHHHHc----cccccCCCCCCCc
Confidence 3457778888864 7999999887765
No 211
>COG2174 RPL34A Ribosomal protein L34E [Translation, ribosomal structure and biogenesis]
Probab=35.24 E-value=22 Score=26.78 Aligned_cols=34 Identities=26% Similarity=0.691 Sum_probs=23.0
Q ss_pred HhCCCCCCCcCCCCC-------CCC-e---------EEeeeceEEcccchh
Q 019768 27 LLQRDNRICADCGAP-------DPK-W---------ASANIGVFICLKCCG 60 (336)
Q Consensus 27 ~~~~~N~~C~dC~~~-------~p~-w---------~s~~~g~f~C~~C~~ 60 (336)
.+.|+--.|++||.+ -|. . ++=.+|-.+|.+|..
T Consensus 29 kK~~~~p~C~~cg~pL~Gi~r~RP~e~~r~skt~krp~RpYGG~lc~~c~~ 79 (93)
T COG2174 29 KKKPTIPKCAICGRPLGGIPRGRPREFRRLSKTKKRPERPYGGYLCANCVR 79 (93)
T ss_pred eccCCCCcccccCCccCCccCCCcHHHHhccccccCcCCCcCceecHHHHH
Confidence 345677799999986 111 1 234588899999964
No 212
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=35.08 E-value=24 Score=26.67 Aligned_cols=40 Identities=28% Similarity=0.573 Sum_probs=29.7
Q ss_pred ChHHHHHHHHh-CCCCCCCcCCCCCCCCeEEeeeceEEcccch
Q 019768 18 SGKGRLKDLLL-QRDNRICADCGAPDPKWASANIGVFICLKCC 59 (336)
Q Consensus 18 ~~~~~l~~~~~-~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~ 59 (336)
+.+++++++.. +...-.|.-||... ---...||+-|..|-
T Consensus 20 slRK~vkkie~~q~~ky~Cp~Cgk~~--vkR~a~GIW~C~~C~ 60 (90)
T PF01780_consen 20 SLRKRVKKIEISQHAKYTCPFCGKTS--VKRVATGIWKCKKCG 60 (90)
T ss_dssp HHHHHHHHHHHHHHS-BEESSSSSSE--EEEEETTEEEETTTT
T ss_pred HHHHHHHHHHHHHhCCCcCCCCCCce--eEEeeeEEeecCCCC
Confidence 35667776654 56778999999976 445688999999994
No 213
>TIGR02890 spore_yteA sporulation protein, yteA family. Members of this predicted regulatory protein are found only in endospore-forming members of the Firmicutes group of bacteria, and in nearly every such species; Clostridium perfringens seems to be an exception. The member from Bacillus subtilis, the model system for the study of the sporulation program, has been designated both yteA and yzwB. Some (but not all) members of this family show a strong sequence match to PFAM family pfam01258 the C4-type zinc finger protein, DksA/TraR family, but only one of the four key Cys residues is conserved. All members of this protein family share an additional C-terminal domain. The function of proteins in this family is unknown. YteA was detected in mature spores of Bacillus subtilis by Kuwana, et al., and appears to be expressed under control of sigma-K.
Probab=34.01 E-value=14 Score=31.07 Aligned_cols=34 Identities=24% Similarity=0.532 Sum_probs=21.6
Q ss_pred CCCCCCcCCCCCCC--CeEEeeeceEEcccchhhhcc
Q 019768 30 RDNRICADCGAPDP--KWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 30 ~~N~~C~dC~~~~p--~w~s~~~g~f~C~~C~~~hr~ 64 (336)
..=..|.+||.+=| ..-. -..+-.|+.|+..+-.
T Consensus 84 G~YG~Ce~CGe~I~~~RL~a-~P~a~~Ci~Cq~~~E~ 119 (159)
T TIGR02890 84 GTYGICEVCGKPIPYERLEA-IPTATTCVECQNRKEV 119 (159)
T ss_pred CCCCeecccCCcccHHHHhh-CCCcchhHHHHHHhhh
Confidence 34458999998632 2222 2245679999987643
No 214
>cd07161 NR_DBD_EcR DNA-binding domain of Ecdysone receptor (ECR) family is composed of two C4-type zinc fingers. DNA-binding domain of Ecdysone receptor (EcR) family is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. EcR interacts with highly degenerate pseudo-palindromic response elements, resembling inverted repeats of 5'-AGGTCA-3' separated by 1 bp, upstream of the target gene and modulates the rate of transcriptional initiation. EcR is present only in invertebrates and regulates the expression of a large number of genes during development and reproduction. EcR functions as a heterodimer by partnering with ultraspiracle protein (USP), the ortholog of the vertebrate retinoid X receptor (RXR). The natural ligands of EcR are ecdysteroids, the endogenous steroidal hormones found in invertebrates. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, EcRs h
Probab=33.98 E-value=30 Score=26.16 Aligned_cols=29 Identities=24% Similarity=0.639 Sum_probs=23.1
Q ss_pred CCCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019768 33 RICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 33 ~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
..|.=||.+.. ...||++.|..|++..|-
T Consensus 2 ~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 30 (91)
T cd07161 2 ELCLVCGDRAS---GYHYNALTCEGCKGFFRR 30 (91)
T ss_pred CCCeeCCCcCc---ceEECceeehhhHHHHHH
Confidence 35888987544 469999999999998764
No 215
>cd07169 NR_DBD_GCNF_like DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers. DNA-binding domain of Germ cell nuclear factor (GCNF) F1 is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. This domain interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. GCNF is a transcription factor expressed in post-meiotic stages of developing male germ cells. In vitro, GCNF has the ability to bind to direct repeat elements of 5'-AGGTCA.AGGTCA-3', as well as to an extended half-site sequence 5'-TCA.AGGTCA-3'. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, GCNF has a central well conserved DNA-binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD).
Probab=33.65 E-value=26 Score=26.41 Aligned_cols=32 Identities=25% Similarity=0.673 Sum_probs=25.7
Q ss_pred CCCCCCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019768 30 RDNRICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 30 ~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
.++..|.=|+.+. ....||+..|..|++..|-
T Consensus 4 ~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 35 (90)
T cd07169 4 AEQRTCLICGDRA---TGLHYGIISCEGCKGFFKR 35 (90)
T ss_pred ccCCCCeecCCcC---cceEECcceehhhHHHHHH
Confidence 4567799999754 4568999999999998864
No 216
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=33.21 E-value=21 Score=20.70 Aligned_cols=28 Identities=14% Similarity=0.393 Sum_probs=16.4
Q ss_pred CCCcCCCCCCCCeEEeeeceEEcccchh
Q 019768 33 RICADCGAPDPKWASANIGVFICLKCCG 60 (336)
Q Consensus 33 ~~C~dC~~~~p~w~s~~~g~f~C~~C~~ 60 (336)
+.|--|+..-+.=..-.-..++|..|..
T Consensus 2 ~~C~rC~~~~~~~~~~~r~~~~C~rCq~ 29 (30)
T PF06827_consen 2 EKCPRCWNYIEDIGINGRSTYLCPRCQK 29 (30)
T ss_dssp SB-TTT--BBEEEEETTEEEEE-TTTCC
T ss_pred CcCccCCCcceEeEecCCCCeECcCCcC
Confidence 3577777765555555677899999964
No 217
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=32.54 E-value=33 Score=32.13 Aligned_cols=30 Identities=23% Similarity=0.618 Sum_probs=21.0
Q ss_pred CCCCCcCCCCCCCCeEEeeeceEEcccchhh
Q 019768 31 DNRICADCGAPDPKWASANIGVFICLKCCGV 61 (336)
Q Consensus 31 ~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~ 61 (336)
....|.+||.. +-=....-|-.+|..|--+
T Consensus 10 ~~~~Cp~Cg~~-~iv~d~~~Ge~vC~~CG~V 39 (310)
T PRK00423 10 EKLVCPECGSD-KLIYDYERGEIVCADCGLV 39 (310)
T ss_pred cCCcCcCCCCC-CeeEECCCCeEeecccCCc
Confidence 44689999973 2122346799999999554
No 218
>cd07162 NR_DBD_PXR DNA-binding domain of pregnane X receptor (PXRs) is composed of two C4-type zinc fingers. DNA-binding domain (DBD)of pregnane X receptor (PXR) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. PXR DBD interacts with the PXR response element, a perfect repeat of two AGTTCA motifs with a 4 bp spacer upstream of the target gene, and modulates the rate of transcriptional initiation. The pregnane X receptor (PXR) is a ligand-regulated transcription factor that responds to a diverse array of chemically distinct ligands, including many endogenous compounds and clinical drugs. PXR functions as a heterodimer with retinoic X receptor-alpha (RXRa) and binds to a variety of promoter regions of a diverse set of target genes involved in the metabolism, transport, and ultimately, elimination of these molecules from the body. Like other nuclear receptors, PXR has a central well conserved DNA-binding
Probab=32.43 E-value=31 Score=25.76 Aligned_cols=28 Identities=29% Similarity=0.691 Sum_probs=21.9
Q ss_pred CCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019768 34 ICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 34 ~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
.|.=||.+.. ...||+..|..|++..|-
T Consensus 1 ~C~VCg~~~~---g~hygv~sC~aC~~FFRR 28 (87)
T cd07162 1 ICRVCGDRAT---GYHFNAMTCEGCKGFFRR 28 (87)
T ss_pred CCcccCCcCc---ceEECcceehhhHHHHHh
Confidence 3777887554 358999999999998764
No 219
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=32.14 E-value=24 Score=20.86 Aligned_cols=23 Identities=22% Similarity=0.717 Sum_probs=12.3
Q ss_pred CCcCCCCCCCCeEEeeeceEEcccch
Q 019768 34 ICADCGAPDPKWASANIGVFICLKCC 59 (336)
Q Consensus 34 ~C~dC~~~~p~w~s~~~g~f~C~~C~ 59 (336)
.|--|++... | .+-.+|||..|.
T Consensus 4 ~Cp~C~se~~-y--~D~~~~vCp~C~ 26 (30)
T PF08274_consen 4 KCPLCGSEYT-Y--EDGELLVCPECG 26 (30)
T ss_dssp --TTT------E--E-SSSEEETTTT
T ss_pred CCCCCCCcce-e--ccCCEEeCCccc
Confidence 5777887654 3 677899999995
No 220
>TIGR03711 acc_sec_asp3 accessory Sec system protein Asp3. This protein is designated Asp3 because, along with SecY2, SecA2, and other proteins it is part of the accessory Sec system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=31.71 E-value=1.6e+02 Score=24.04 Aligned_cols=57 Identities=16% Similarity=0.266 Sum_probs=38.6
Q ss_pred CCccCceeeceeeecCCccc-ccccceeeecCeEEEEEEEEecccccceEEEEEEEEe
Q 019768 277 PEMFGNMQIGKWLKSDDNAL-LEDSTINIIDGKVKQKISLKLQNVESGELELELEWMP 333 (336)
Q Consensus 277 ~~~~~~~~~~~wf~l~~~~~-~~~~~~~~~~g~~~~~~~l~l~~~~~G~i~l~l~~~~ 333 (336)
+-++-|..+..|++...=-. -....+++..+.-.=.+.+.++..+.|.+.|+|.|+.
T Consensus 32 ~lMpsG~~I~~W~S~~nyq~~r~~P~LPlLk~g~~Y~i~~n~~~~P~~s~~~ki~F~d 89 (135)
T TIGR03711 32 PLMPSGETIHTWSSLTNYQAARTVPSLPLLKRGQTYKLSLNADASPEGSVYLKITFFD 89 (135)
T ss_pred cCCCCCCEEEEEEeeecccccCCCCCCcEEcCCCEEEEEEeeeeCCCceEEEEEEEec
Confidence 34567888999987622110 1114566666655567777888889999999999975
No 221
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=31.65 E-value=25 Score=37.36 Aligned_cols=87 Identities=17% Similarity=0.305 Sum_probs=58.0
Q ss_pred eEEEEEEEEEEEeeeecccCCCCCCCcEEEEEECC-----eEEEeeeeCCCCCceeeceeeecccCCCCceEEEEEecC-
Q 019768 176 VEFIGLLKVKVVKGINLAIRDMMSSDPYVVLRLGQ-----QTVQTTIVKSNLNPVWNEELMLSVPQEYGPVKLEVFDHD- 249 (336)
Q Consensus 176 ~~~~g~L~V~v~~a~~L~~~~~~~~dPyv~i~l~~-----~~~rT~~~~~t~nP~W~e~f~f~v~~~~~~L~v~V~d~~- 249 (336)
....|.+++.+.+|..|..-. .-||...++. .+-+|+++.+|..|.||++|+.++.. .+.+.+..++++
T Consensus 755 pl~ygflh~~vhsat~lkqs~----~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~-sqS~r~~~~ek~~ 829 (1112)
T KOG4269|consen 755 PLLYGFLHVIVHSATGLKQSR----NLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE-SQSSRLEKTEKST 829 (1112)
T ss_pred cccccceeeeecccccccccc----ceeeehhhhhhccccccccceeeecccCCCCChhcccchhh-ccccchhhhcccc
Confidence 456799999999998776533 5677766532 45689999999999999999988754 234445444433
Q ss_pred ---------CCCCCCeeEEEEEeCccc
Q 019768 250 ---------TFSADDIMGEAEIDIQPL 267 (336)
Q Consensus 250 ---------~~~~dd~iG~~~i~l~~l 267 (336)
....+...|...+.|...
T Consensus 830 ~~~k~~~~~~~~~~~~~~~~~~~l~~~ 856 (1112)
T KOG4269|consen 830 PVEKLIDSHSQNSQNEEKRSRMKLDPQ 856 (1112)
T ss_pred hHHHhhhccchhhcccccccccccCcc
Confidence 223344556655555443
No 222
>cd07163 NR_DBD_TLX DNA-binding domain of Tailless (TLX) is composed of two C4-type zinc fingers. DNA-binding domain of Tailless (TLX) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. TLX interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. TLX is an orphan receptor that is expressed by neural stem/progenitor cells in the adult brain of the subventricular zone (SVZ) and the dentate gyrus (DG). It plays a key role in neural development by promoting cell cycle progression and preventing apoptosis in the developing brain. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, TLX has a central well conserved DNA-binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD).
Probab=31.18 E-value=27 Score=26.38 Aligned_cols=31 Identities=23% Similarity=0.654 Sum_probs=24.9
Q ss_pred CCCCCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019768 31 DNRICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 31 ~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
-|..|.=||.+.. ...||+..|..|++..|-
T Consensus 5 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 35 (92)
T cd07163 5 LDIPCKVCGDRSS---GKHYGIYACDGCSGFFKR 35 (92)
T ss_pred cCCCCcccCCcCc---ccEECceeeeeeeeEEee
Confidence 3678999997543 369999999999998764
No 223
>cd07157 2DBD_NR_DBD1 The first DNA-binding domain (DBD) of the 2DBD nuclear receptors is composed of two C4-type zinc fingers. The first DNA-binding domain (DBD) of the 2DBD nuclear receptors(NRs) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. NRs interact with specific DNA sites upstream of the target gene and modulate the rate of transcriptional initiation. Theses proteins contain two DBDs in tandem, probably resulted from an ancient recombination event. The 2DBD-NRs are found only in flatworm species, mollusks and arthropods. Their biological function is unknown.
Probab=30.88 E-value=27 Score=26.09 Aligned_cols=28 Identities=29% Similarity=0.733 Sum_probs=22.5
Q ss_pred CCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019768 34 ICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 34 ~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
.|.=||.+. ....||+..|..|++..|-
T Consensus 2 ~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 29 (86)
T cd07157 2 TCQVCGEPA---AGFHHGAYVCEACKKFFMR 29 (86)
T ss_pred CCcccCCcC---cccEECcceeeEeeeEEec
Confidence 488888754 3469999999999998765
No 224
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=30.27 E-value=45 Score=27.04 Aligned_cols=37 Identities=30% Similarity=0.640 Sum_probs=29.1
Q ss_pred ChHHHHHHHHhCCC---CCCCcCCCCCCCCeEEeeeceEEcccc
Q 019768 18 SGKGRLKDLLLQRD---NRICADCGAPDPKWASANIGVFICLKC 58 (336)
Q Consensus 18 ~~~~~l~~~~~~~~---N~~C~dC~~~~p~w~s~~~g~f~C~~C 58 (336)
...+.+.+|+.+.+ +..|--||.+--. --|..+|.-|
T Consensus 11 i~~k~iA~lLl~GAkML~~hCp~Cg~PLF~----KdG~v~CPvC 50 (131)
T COG1645 11 IKVKKIAELLLQGAKMLAKHCPKCGTPLFR----KDGEVFCPVC 50 (131)
T ss_pred hhHHHHHHHHHhhhHHHHhhCcccCCccee----eCCeEECCCC
Confidence 34567778777665 7899999997544 6799999999
No 225
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=30.07 E-value=44 Score=25.58 Aligned_cols=28 Identities=21% Similarity=0.570 Sum_probs=22.5
Q ss_pred CCCCcCCCCCCCCeEEeee--------ceEEcccch
Q 019768 32 NRICADCGAPDPKWASANI--------GVFICLKCC 59 (336)
Q Consensus 32 N~~C~dC~~~~p~w~s~~~--------g~f~C~~C~ 59 (336)
+..|..||.....|..+.. -.|+|.+|.
T Consensus 62 ~~~Cp~Cg~~~a~f~~~Q~RsadE~~T~fy~C~~C~ 97 (104)
T TIGR01384 62 RVECPKCGHKEAYYWLLQTRRADEPETRFYKCTKCG 97 (104)
T ss_pred cCCCCCCCCCeeEEEEeccCCCCCCcEEEEEeCCCC
Confidence 7899999999988886533 378999994
No 226
>cd07172 NR_DBD_GR_PR DNA-binding domain of glucocorticoid receptor (GR) is composed of two C4-type zinc fingers. DNA-binding domains of glucocorticoid receptor (GR) and progesterone receptor (PR) are composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinate a single zinc atom. The DBD from both receptors interact with the same hormone response element (HRE), which is an imperfect palindrome GGTACAnnnTGTTCT, upstream of target genes and modulates the rate of transcriptional initiation. GR is a transcriptional regulator that mediates the biological effects of glucocorticoids and PR regulates genes controlled by progesterone. GR is expressed in almost every cell in the body and regulates genes controlling a wide variety of processes including the development, metabolism, and immune response of the organism. PR functions in a variety of biological processes including development of the mammary gland, regulating cell cycle progression, p
Probab=29.82 E-value=37 Score=24.79 Aligned_cols=29 Identities=24% Similarity=0.612 Sum_probs=23.2
Q ss_pred CCCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019768 33 RICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 33 ~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
..|.=||.+.. ...||+..|..|.+..|-
T Consensus 3 ~~C~VCg~~a~---g~hyGv~sC~aC~~FFRR 31 (78)
T cd07172 3 KICLVCSDEAS---GCHYGVLTCGSCKVFFKR 31 (78)
T ss_pred CCCeecCCcCc---ceEECceeehhhHHhHHH
Confidence 46888987543 469999999999998764
No 227
>COG2158 Uncharacterized protein containing a Zn-finger-like domain [General function prediction only]
Probab=29.76 E-value=37 Score=26.32 Aligned_cols=31 Identities=32% Similarity=0.730 Sum_probs=24.5
Q ss_pred CcCCCCCCCCeEEeeec--eEEcccchhhhccCCC
Q 019768 35 CADCGAPDPKWASANIG--VFICLKCCGVHRSLGT 67 (336)
Q Consensus 35 C~dC~~~~p~w~s~~~g--~f~C~~C~~~hr~lg~ 67 (336)
|.||+-- .|++-.-| |.-|.+|-=|||.=+.
T Consensus 45 c~~~~~g--ewi~~~~G~~VwSC~dC~~iH~ke~~ 77 (112)
T COG2158 45 CENEELG--EWISDSNGRKVWSCSDCHWIHRKEGA 77 (112)
T ss_pred ccccccC--ceeEcCCCCEEeeccccceecccchH
Confidence 4555543 89999989 9999999999987544
No 228
>PRK00420 hypothetical protein; Validated
Probab=29.41 E-value=44 Score=26.36 Aligned_cols=40 Identities=25% Similarity=0.355 Sum_probs=26.8
Q ss_pred hHHHHHHHHhCC---CCCCCcCCCCCCCCeEEeeeceEEcccchhh
Q 019768 19 GKGRLKDLLLQR---DNRICADCGAPDPKWASANIGVFICLKCCGV 61 (336)
Q Consensus 19 ~~~~l~~~~~~~---~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~ 61 (336)
..+.+.+++.+. -+..|..||.+-. -..-|-..|..|...
T Consensus 7 ~~k~~a~~Ll~Ga~ml~~~CP~Cg~pLf---~lk~g~~~Cp~Cg~~ 49 (112)
T PRK00420 7 IVKKAAELLLKGAKMLSKHCPVCGLPLF---ELKDGEVVCPVHGKV 49 (112)
T ss_pred HHHHHHHHHHhHHHHccCCCCCCCCcce---ecCCCceECCCCCCe
Confidence 345555555442 3689999997543 237789999999553
No 229
>PRK10778 dksA RNA polymerase-binding transcription factor; Provisional
Probab=29.11 E-value=17 Score=30.36 Aligned_cols=38 Identities=18% Similarity=0.370 Sum_probs=23.9
Q ss_pred CCCCCCCcCCCCCCC-CeEEeeeceEEcccchhhhccCC
Q 019768 29 QRDNRICADCGAPDP-KWASANIGVFICLKCCGVHRSLG 66 (336)
Q Consensus 29 ~~~N~~C~dC~~~~p-~w~s~~~g~f~C~~C~~~hr~lg 66 (336)
...-..|-+||.+=| .=.-+--++..|+.|...|-..+
T Consensus 108 ~gtYG~Ce~CGe~I~~~RL~A~P~A~~CI~CQe~~E~~~ 146 (151)
T PRK10778 108 DEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIRE 146 (151)
T ss_pred CCCCceeccCCCcccHHHHhcCCCccccHHHHHHHHHHh
Confidence 355679999998632 11112234577999998775443
No 230
>cd07156 NR_DBD_VDR_like The DNA-binding domain of vitamin D receptors (VDR) like nuclear receptor family is composed of two C4-type zinc fingers. The DNA-binding domain of vitamin D receptors (VDR) like nuclear receptor family is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. This domain interacts with specific DNA site upstream of the target gene and modulates the rate of transcriptional initiation. This family includes three types of nuclear receptors: vitamin D receptors (VDR), constitutive androstane receptor (CAR) and pregnane X receptor (PXR). VDR regulates calcium metabolism, cellular proliferation and differentiation. PXR and CAR function as sensors of toxic byproducts of cell metabolism and of exogenous chemicals, to facilitate their elimination. The DNA binding activity is regulated by their corresponding ligands. VDR is activated by Vitamin D; CAR and PXR respond to a diverse array of chemi
Probab=28.56 E-value=38 Score=24.21 Aligned_cols=27 Identities=26% Similarity=0.680 Sum_probs=20.3
Q ss_pred CcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019768 35 CADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 35 C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
|.=|+.+.. ...||+..|..|++..|-
T Consensus 1 C~VC~~~~~---g~hygv~sC~aC~~FFRR 27 (72)
T cd07156 1 CGVCGDRAT---GYHFNAMTCEGCKGFFRR 27 (72)
T ss_pred CCccCccCc---ccEECcceehhhhhhhch
Confidence 455665443 358999999999998775
No 231
>cd06955 NR_DBD_VDR DNA-binding domain of vitamin D receptors (VDR) is composed of two C4-type zinc fingers. DNA-binding domain of vitamin D receptors (VDR) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. VDR interacts with a VDR response element, a direct repeat of GGTTCA DNA site with 3 bp spacer upstream of the target gene, and modulates the rate of transcriptional initiation. VDR is a member of the nuclear receptor (NR) superfamily that functions as classical endocrine receptors. VDR controls a wide range of biological activities including calcium metabolism, cell proliferation and differentiation, and immunomodulation. VDR is a high-affinity receptor for the biologically most active Vitamin D metabolite, 1alpha,25-dihydroxyvitamin D3 (1alpha,25(OH)2D3). The binding of the ligand to the receptor induces a conformational change of the ligand binding domain (LBD) with consequent dissociation of core
Probab=27.89 E-value=39 Score=26.38 Aligned_cols=30 Identities=30% Similarity=0.698 Sum_probs=24.3
Q ss_pred CCCCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019768 32 NRICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 32 N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
...|.=||.... ...||+..|..|++..|-
T Consensus 6 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 35 (107)
T cd06955 6 PRICGVCGDRAT---GFHFNAMTCEGCKGFFRR 35 (107)
T ss_pred CCCCeecCCcCc---ccEECcceeeeecceecc
Confidence 367999997544 469999999999998774
No 232
>cd07158 NR_DBD_Ppar_like The DNA-binding domain of peroxisome proliferator-activated receptors (PPAR) like nuclear receptor family. The DNA-binding domain of peroxisome proliferator-activated receptors (PPAR) like nuclear receptor family is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. These domains interact with specific DNA sites upstream of the target gene and modulate the rate of transcriptional initiation. This family includes three known types of nuclear receptors: peroxisome proliferator-activated receptors (PPAR), REV-ERB receptors and Drosophila ecdysone-induced protein 78 (E78). Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, PPAR-like receptors have a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a non-conserved hinge and a C-terminal ligand binding domain (LBD).
Probab=27.54 E-value=36 Score=24.37 Aligned_cols=27 Identities=33% Similarity=0.736 Sum_probs=20.5
Q ss_pred CcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019768 35 CADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 35 C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
|.=||.+.. ...||++.|..|.+..|-
T Consensus 1 C~VCg~~~~---g~hyGv~~C~aC~~FFRR 27 (73)
T cd07158 1 CKVCGDKAS---GFHYGVHSCEGCKGFFRR 27 (73)
T ss_pred CcccCccCc---ceEECcchhhHHHHHHhh
Confidence 455665443 368999999999998875
No 233
>cd06956 NR_DBD_RXR DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers. DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. RXR functions as a DNA binding partner by forming heterodimers with other nuclear receptors including CAR, FXR, LXR, PPAR, PXR, RAR, TR, and VDR. All RXR heterodimers preferentially bind response elements composed of direct repeats of two AGGTCA sites with a 1-5 bp spacer. RXRs can play different roles in these heterodimers. RXR acts either as a structural component of the heterodimer complex, required for DNA binding but not acting as a receptor, or as both a structural and a functional component of the heterodimer, allowing 9-cis RA to signal through the corresponding heterodimer. In addition, RXR can also form homodimers, functioning as a receptor for 9-cis RA, independently of other nuclear rec
Probab=26.66 E-value=47 Score=24.11 Aligned_cols=28 Identities=36% Similarity=0.837 Sum_probs=22.4
Q ss_pred CCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019768 34 ICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 34 ~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
.|.=||.+.. ...||+..|..|++..|-
T Consensus 2 ~C~VC~~~~~---g~hygv~sC~aC~~FFRR 29 (77)
T cd06956 2 ICAICGDRAS---GKHYGVYSCEGCKGFFKR 29 (77)
T ss_pred CCcccCCcCc---ceEECceeehhHHHHHHH
Confidence 4777887543 469999999999998864
No 234
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=26.51 E-value=1e+02 Score=22.32 Aligned_cols=27 Identities=30% Similarity=0.585 Sum_probs=21.9
Q ss_pred CCceEEEEEecCCCCCCCeeEEEEEeC
Q 019768 238 YGPVKLEVFDHDTFSADDIMGEAEIDI 264 (336)
Q Consensus 238 ~~~L~v~V~d~~~~~~dd~iG~~~i~l 264 (336)
.....|++|+.+.+..|++++.+..+-
T Consensus 11 ~~~~~V~L~e~d~~~~Ddll~~~~Td~ 37 (80)
T PF01060_consen 11 AKNVKVKLWEDDYFDPDDLLDETKTDS 37 (80)
T ss_pred CCCCEEEEEECCCCCCCceeEEEEECC
Confidence 355679999999888899999877753
No 235
>cd07165 NR_DBD_DmE78_like DNA-binding domain of Drosophila ecdysone-induced protein 78 (E78) like is composed of two C4-type zinc fingers. DNA-binding domain of proteins similar to Drosophila ecdysone-induced protein 78 (E78) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. E78 interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. Drosophila ecdysone-induced protein 78 (E78) is a transcription factor belonging to the nuclear receptor superfamily. E78 is a product of the ecdysone-inducible gene found in an early late puff locus at position 78C during the onset of Drosophila metamorphosis. An E78 orthologue from the Platyhelminth Schistosoma mansoni (SmE78) has also been identified. It is the first E78 orthologue known outside of the molting animals--the Ecdysozoa. The SmE78 may be involved in transduction of an ecdysone signal in S. mansoni,
Probab=26.30 E-value=35 Score=25.06 Aligned_cols=27 Identities=33% Similarity=0.711 Sum_probs=20.7
Q ss_pred CcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019768 35 CADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 35 C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
|.=||.+.. ...||+..|..|.+..|-
T Consensus 1 C~VCg~~~~---g~hyG~~sC~aC~~FFRR 27 (81)
T cd07165 1 CKVCGDKAS---GYHYGVTSCEGCKGFFRR 27 (81)
T ss_pred CCccCccCc---ceEECchhhhhHHHHHHh
Confidence 555776443 459999999999998875
No 236
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=26.07 E-value=23 Score=21.85 Aligned_cols=27 Identities=26% Similarity=0.541 Sum_probs=18.9
Q ss_pred CCcCCCCCCCCeEEee-eceEEcccchh
Q 019768 34 ICADCGAPDPKWASAN-IGVFICLKCCG 60 (336)
Q Consensus 34 ~C~dC~~~~p~w~s~~-~g~f~C~~C~~ 60 (336)
.|.+||..-..+.+.. -....|..|.+
T Consensus 7 ~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (41)
T smart00834 7 RCEDCGHTFEVLQKISDDPLATCPECGG 34 (41)
T ss_pred EcCCCCCEEEEEEecCCCCCCCCCCCCC
Confidence 5888888766666554 45667888865
No 237
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=26.07 E-value=15 Score=22.09 Aligned_cols=22 Identities=32% Similarity=0.721 Sum_probs=12.7
Q ss_pred CCcCCCCCCCCeEEeeeceEEcccc
Q 019768 34 ICADCGAPDPKWASANIGVFICLKC 58 (336)
Q Consensus 34 ~C~dC~~~~p~w~s~~~g~f~C~~C 58 (336)
.|++||+... .. .....-|..|
T Consensus 2 ~C~~Cg~~~~--~~-~~~~irC~~C 23 (32)
T PF03604_consen 2 ICGECGAEVE--LK-PGDPIRCPEC 23 (32)
T ss_dssp BESSSSSSE---BS-TSSTSSBSSS
T ss_pred CCCcCCCeeE--cC-CCCcEECCcC
Confidence 5899998654 11 2233467777
No 238
>cd06962 NR_DBD_FXR DNA-binding domain of Farnesoid X receptor (FXR) family is composed of two C4-type zinc fingers. DNA-binding domain of Farnesoid X receptor (FXR) family is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. FXR interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. FXR is a member of the nuclear receptor family of ligand activated transcription factors. Bile acids are endogenous ligands for FXRs. Upon binding of a ligand, FXR binds to FXR response element (FXRE), which is an inverted repeat of TGACCT spaced by one nucleotide, either as a monomer or as a heterodimer with retinoid X receptor (RXR), to regulate the expression of various genes involved in bile acid, lipid, and glucose metabolism. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, FXR has a central well conserved
Probab=25.25 E-value=38 Score=25.14 Aligned_cols=29 Identities=24% Similarity=0.658 Sum_probs=22.7
Q ss_pred CCCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019768 33 RICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 33 ~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
..|.=||.+.. ...||++.|..|++..|-
T Consensus 2 ~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 30 (84)
T cd06962 2 ELCVVCGDKAS---GYHYNALTCEGCKGFFRR 30 (84)
T ss_pred CCCeecCCcCc---ceEECcceeecceeeeee
Confidence 35888887544 369999999999998764
No 239
>cd07168 NR_DBD_DHR4_like DNA-binding domain of ecdysone-induced DHR4 orphan nuclear receptor is composed of two C4-type zinc fingers. DNA-binding domain of ecdysone-induced DHR4 orphan nuclear receptor is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. This domain interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. Ecdysone-induced orphan receptor DHR4 is a member of the nuclear receptor family. DHR4 is expressed during the early Drosophila larval development and is induced by ecdysone. DHR4 coordinates growth and maturation in Drosophila by mediating endocrine response to the attainment of proper body size during larval development. Mutations in DHR4 result in shorter larval development which translates into smaller and lighter flies. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, DHR4
Probab=25.14 E-value=60 Score=24.40 Aligned_cols=31 Identities=19% Similarity=0.632 Sum_probs=24.7
Q ss_pred CCCCCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019768 31 DNRICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 31 ~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
....|.=||.+.. ...||+..|..|++..|-
T Consensus 5 ~~~~C~VCg~~~~---g~hyGv~sC~aCk~FFRR 35 (90)
T cd07168 5 SPKLCSICEDKAT---GLHYGIITCEGCKGFFKR 35 (90)
T ss_pred cCCCCcccCCcCc---ceEECceehhhhhHhhhh
Confidence 3457999997543 579999999999998864
No 240
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=24.73 E-value=39 Score=19.88 Aligned_cols=24 Identities=42% Similarity=1.025 Sum_probs=12.0
Q ss_pred CCCCCcCCCCC----CCCeEEeeeceEEcccchh
Q 019768 31 DNRICADCGAP----DPKWASANIGVFICLKCCG 60 (336)
Q Consensus 31 ~N~~C~dC~~~----~p~w~s~~~g~f~C~~C~~ 60 (336)
.++.|.-||++ .-.|+ .+|..|-.
T Consensus 2 ~~rfC~~CG~~t~~~~~g~~------r~C~~Cg~ 29 (32)
T PF09297_consen 2 NHRFCGRCGAPTKPAPGGWA------RRCPSCGH 29 (32)
T ss_dssp TTSB-TTT--BEEE-SSSS-------EEESSSS-
T ss_pred CCcccCcCCccccCCCCcCE------eECCCCcC
Confidence 36899999985 22343 56777743
No 241
>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
Probab=24.66 E-value=36 Score=23.02 Aligned_cols=33 Identities=27% Similarity=0.725 Sum_probs=25.3
Q ss_pred CCcCCCCC-CCCeEEee-eceEEcccchhhhccCC
Q 019768 34 ICADCGAP-DPKWASAN-IGVFICLKCCGVHRSLG 66 (336)
Q Consensus 34 ~C~dC~~~-~p~w~s~~-~g~f~C~~C~~~hr~lg 66 (336)
.|..|+.. -|.|=.-. -+..+|-.|--..+..|
T Consensus 1 ~C~~C~~~~Tp~WR~g~~~~~~LCNaCgl~~~k~~ 35 (54)
T cd00202 1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHG 35 (54)
T ss_pred CCCCCCCCCCcccccCCCCcchHHHHHHHHHHhcC
Confidence 59999974 67788754 78899999976665555
No 242
>cd06970 NR_DBD_PNR DNA-binding domain of the photoreceptor cell-specific nuclear receptor (PNR) is composed of two C4-type zinc fingers. DNA-binding domain of the photoreceptor cell-specific nuclear receptor (PNR) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. PNR interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. PNR is a member of the nuclear receptor superfamily of the ligand-activated transcription factors. PNR is expressed only in the outer layer of retinal photoreceptor cells. It may be involved in the signaling pathway regulating photoreceptor differentiation and/or maintenance. It most likely binds to DNA as a homodimer. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, PNR has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hing
Probab=24.65 E-value=44 Score=25.30 Aligned_cols=31 Identities=23% Similarity=0.749 Sum_probs=24.5
Q ss_pred CCCCCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019768 31 DNRICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 31 ~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
-...|.=||.+.. ...||+..|..|++..|-
T Consensus 5 p~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 35 (92)
T cd06970 5 PGLLCRVCGDTSS---GKHYGIYACNGCSGFFKR 35 (92)
T ss_pred CCCCCeecCCcCc---ccEECccEEeeeeeEeee
Confidence 3457999997654 359999999999998764
No 243
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=24.62 E-value=1.1e+02 Score=23.13 Aligned_cols=40 Identities=23% Similarity=0.593 Sum_probs=29.9
Q ss_pred ChHHHHHHHHh-CCCCCCCcCCCCCCCCeEEeeeceEEcccch
Q 019768 18 SGKGRLKDLLL-QRDNRICADCGAPDPKWASANIGVFICLKCC 59 (336)
Q Consensus 18 ~~~~~l~~~~~-~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~ 59 (336)
+.++.++++-. +..--.|.-||... ---...||+-|..|-
T Consensus 20 slRK~v~kie~~q~a~y~CpfCgk~~--vkR~a~GIW~C~~C~ 60 (91)
T TIGR00280 20 KLRRQVKKIEIQQKAKYVCPFCGKKT--VKRGSTGIWTCRKCG 60 (91)
T ss_pred HHHHHHHHHHHHHhcCccCCCCCCCc--eEEEeeEEEEcCCCC
Confidence 45777777765 45667999999654 445678999999993
No 244
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=24.59 E-value=51 Score=26.01 Aligned_cols=45 Identities=22% Similarity=0.493 Sum_probs=26.0
Q ss_pred CCCCCCCcCCCCCCCCeEEeeeceEEcccchhhh-ccCCCceeeEeEecC
Q 019768 29 QRDNRICADCGAPDPKWASANIGVFICLKCCGVH-RSLGTHVSKVLSVTL 77 (336)
Q Consensus 29 ~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~h-r~lg~~~s~v~s~~~ 77 (336)
.|.--.|.+||.. ..+..-.+.|..|.+.. +.++-.=-+|++|.+
T Consensus 67 ~p~~~~C~~Cg~~----~~~~~~~~~CP~Cgs~~~~i~~G~El~I~~ie~ 112 (115)
T TIGR00100 67 EPVECECEDCSEE----VSPEIDLYRCPKCHGIMLQVRAGKELNLKSIEV 112 (115)
T ss_pred eCcEEEcccCCCE----EecCCcCccCcCCcCCCcEEecCCeEEEEEEEE
Confidence 4777899999953 22322357899998754 222111125566554
No 245
>PHA02942 putative transposase; Provisional
Probab=24.57 E-value=46 Score=32.18 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=18.8
Q ss_pred CCCcCCCCCCCCeEEeeeceEEcccch
Q 019768 33 RICADCGAPDPKWASANIGVFICLKCC 59 (336)
Q Consensus 33 ~~C~dC~~~~p~w~s~~~g~f~C~~C~ 59 (336)
+.|..||...+ ..+-.+|.|..|-
T Consensus 326 q~Cs~CG~~~~---~l~~r~f~C~~CG 349 (383)
T PHA02942 326 VSCPKCGHKMV---EIAHRYFHCPSCG 349 (383)
T ss_pred ccCCCCCCccC---cCCCCEEECCCCC
Confidence 68999998765 2455689999993
No 246
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=24.41 E-value=55 Score=21.73 Aligned_cols=26 Identities=31% Similarity=0.911 Sum_probs=18.6
Q ss_pred CCCCCCcCCCCCCCCeEEeeeceEEcccc
Q 019768 30 RDNRICADCGAPDPKWASANIGVFICLKC 58 (336)
Q Consensus 30 ~~N~~C~dC~~~~p~w~s~~~g~f~C~~C 58 (336)
+-++.|..||+. ......+-|.|..|
T Consensus 18 ~~~~fCP~Cg~~---~m~~~~~r~~C~~C 43 (50)
T PRK00432 18 RKNKFCPRCGSG---FMAEHLDRWHCGKC 43 (50)
T ss_pred EccCcCcCCCcc---hheccCCcEECCCc
Confidence 346699999983 33344578899998
No 247
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=24.34 E-value=60 Score=20.30 Aligned_cols=28 Identities=21% Similarity=0.624 Sum_probs=17.9
Q ss_pred CCcCCCCCCCCeEEeeeceEEcccchhh
Q 019768 34 ICADCGAPDPKWASANIGVFICLKCCGV 61 (336)
Q Consensus 34 ~C~dC~~~~p~w~s~~~g~f~C~~C~~~ 61 (336)
.|.-|+..--.-..-++-+..|..|-|+
T Consensus 1 ~CP~C~~~l~~~~~~~~~id~C~~C~G~ 28 (41)
T PF13453_consen 1 KCPRCGTELEPVRLGDVEIDVCPSCGGI 28 (41)
T ss_pred CcCCCCcccceEEECCEEEEECCCCCeE
Confidence 3777777533333355777888888775
No 248
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=24.30 E-value=52 Score=21.25 Aligned_cols=16 Identities=25% Similarity=0.740 Sum_probs=11.6
Q ss_pred CCcCCCCCCCCeEEee
Q 019768 34 ICADCGAPDPKWASAN 49 (336)
Q Consensus 34 ~C~dC~~~~p~w~s~~ 49 (336)
.|.+|+..+.-|+++.
T Consensus 1 ~C~~C~~~~~l~~CL~ 16 (50)
T smart00290 1 RCSVCGTIENLWLCLT 16 (50)
T ss_pred CcccCCCcCCeEEecC
Confidence 4999998776665444
No 249
>cd06965 NR_DBD_Ppar DNA-binding domain of peroxisome proliferator-activated receptors (PPAR) is composed of two C4-type zinc fingers. DNA-binding domain of peroxisome proliferator-activated receptors (PPAR) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. PPAR interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. Peroxisome proliferator-activated receptors (PPARs) are members of the nuclear receptor superfamily of ligand-activated transcription factors. PPARs play important roles in regulating cellular differentiation, development and lipid metabolism. Activated PPAR forms a heterodimer with the retinoid X receptor (RXR) that binds to the hormone response elements, which are composed of two direct repeats of the consensus sequence 5'-AGGTCA-3' separated by one to five base pair located upstream of the peroxisome proliferator responsive gene
Probab=24.12 E-value=37 Score=25.16 Aligned_cols=27 Identities=33% Similarity=0.746 Sum_probs=21.5
Q ss_pred CcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019768 35 CADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 35 C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
|.=||.+.. ...||++.|..|++..|-
T Consensus 2 C~VCg~~~~---g~hyGv~sC~aCk~FFRR 28 (84)
T cd06965 2 CRVCGDKAS---GFHYGVHACEGCKGFFRR 28 (84)
T ss_pred CcccCccCc---ceEEChhhhhhhhhheee
Confidence 677876543 468999999999999875
No 250
>cd07166 NR_DBD_REV_ERB DNA-binding domain of REV-ERB receptor-like is composed of two C4-type zinc fingers. DNA-binding domain of REV-ERB receptor- like is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. This domain interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. REV-ERB receptors are transcriptional regulators belonging to the nuclear receptor superfamily. They regulate a number of physiological functions including the circadian rhythm, lipid metabolism, and cellular differentiation. REV-ERB receptors bind as a monomer to a (A/G)GGTCA half-site with a 5' AT-rich extension or as a homodimer to a direct repeat 2 element (AGGTCA sequence with a 2-bp spacer), indicating functional diversity. When bound to the DNA, they recruit corepressors (NcoR/histone deacetylase 3) to the promoter, resulting in repression of the target genes. The porphyr
Probab=24.06 E-value=36 Score=25.54 Aligned_cols=30 Identities=30% Similarity=0.658 Sum_probs=23.9
Q ss_pred CCCCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019768 32 NRICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 32 N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
+..|.=||.+.. ...||++.|..|++..|-
T Consensus 3 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 32 (89)
T cd07166 3 VVLCKVCGDKAS---GFHYGVHACEGCKGFFRR 32 (89)
T ss_pred CCCCcccCccCc---ceEEChhhhhhHhhEecc
Confidence 456999997554 468999999999998765
No 251
>cd06967 NR_DBD_TR2_like DNA-binding domain of the TR2 and TR4 (human testicular receptor 2 and 4) is composed of two C4-type zinc fingers. DNA-binding domain of the TR2 and TR4 (human testicular receptor 2 and 4) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which coordinates a single zinc atom. TR2 and TR4 interact with specific DNA sites upstream of the target gene and modulate the rate of transcriptional initiation. TR4 and TR2 are orphan nuclear receptors; the physiological ligand is as yet unidentified. TR2 is abundantly expressed in the androgen-sensitive prostate. TR4 transcripts are expressed in many tissues, including central nervous system, adrenal gland, spleen, thyroid gland, and prostate. It has been shown that human TR2 binds to a wide spectrum of natural hormone response elements (HREs) with distinct affinities suggesting that TR2 may cross-talk with other gene expression regulation systems. The genes responding to TR2 or
Probab=23.86 E-value=41 Score=25.14 Aligned_cols=29 Identities=24% Similarity=0.671 Sum_probs=23.0
Q ss_pred CCCcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019768 33 RICADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 33 ~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
..|.=||..... ..||+..|..|++..|-
T Consensus 4 ~~C~VCg~~~~g---~hyGv~sC~aC~~FFRR 32 (87)
T cd06967 4 ELCVVCGDKASG---RHYGAVSCEGCKGFFKR 32 (87)
T ss_pred CCCeecCCcCCc---CEeCcceEeeeeeEeee
Confidence 458889875543 58999999999998764
No 252
>PF04770 ZF-HD_dimer: ZF-HD protein dimerisation region; InterPro: IPR006456 The homeodomain (HD) is a 60-amino acid DNA-binding domain found in many transcription factors. HD-containing proteins are found in diverse organisms such as humans, Drosophila, nematode worms, and plants, where they play important roles in development. Zinc-finger-homeodomain (ZF- HD) subfamily proteins have only been identified in plants, and likely play plant specific roles. ZF-HD proteins are expressed predominantly or exclusively in floral tissue, indicating a likely regulatory role during floral development []. The ZF-HD class of homeodomain proteins may also be involved in the photosynthesis-related mesophyll-specific gene expression of phosphoenolpyruvate carboxylase in C4 species [] and in pathogen signaling and plant defense mechanisms []. These proteins share three domains of high sequence similarity: the homeodomain (II) located at the carboxy-terminus, and two other segments (Ia and Ib) located in the amino-terminal part. These N-terminal domains contain five conserved cysteine residues and at least three conserved histidine residues whose spacing ressembles zinc-binding domains involved in dimerization of transcription factors. Although the two domains contain at least eight potential zinc-binding amino-acids, the unique spacing of the conserved cysteine and histidine residues within domain Ib suggests that both domains form one rather than two zinc finger structures. The two conserved motifs Ia and Ib constitute a dimerization domain which is sufficient for the formation of homo- and heterodimers []. This entry represents the N-terminal Cysteine/Histidine-rich dimerization domain. The companion ZF-HD homeobox domain is described in IPR006455 from INTERPRO.
Probab=22.70 E-value=31 Score=23.82 Aligned_cols=28 Identities=29% Similarity=0.649 Sum_probs=21.3
Q ss_pred CCCCCCCC-eEEeeeceEEcccchhhhccC
Q 019768 37 DCGAPDPK-WASANIGVFICLKCCGVHRSL 65 (336)
Q Consensus 37 dC~~~~p~-w~s~~~g~f~C~~C~~~hr~l 65 (336)
-|+.-.|. +..-+...+.|..| |-||.+
T Consensus 24 GCgEFm~~~g~eg~~~al~CaAC-gCHRnF 52 (60)
T PF04770_consen 24 GCGEFMPSPGEEGTPEALKCAAC-GCHRNF 52 (60)
T ss_pred cccccccCCCCCCCcccceeccc-Ccchhc
Confidence 47877776 65567788899988 778876
No 253
>smart00399 ZnF_C4 c4 zinc finger in nuclear hormone receptors.
Probab=22.67 E-value=49 Score=23.43 Aligned_cols=27 Identities=30% Similarity=0.694 Sum_probs=20.8
Q ss_pred CcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019768 35 CADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 35 C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
|.-||.+.. ...||+..|..|.+..|-
T Consensus 2 C~vC~~~~~---~~hygv~~C~aC~~FFRR 28 (70)
T smart00399 2 CCVCGDHAS---GFHFGVCSCRACKAFFRR 28 (70)
T ss_pred CeEeCCcCc---ccEeCCcEechhhhhhhh
Confidence 666776543 348999999999998764
No 254
>cd06960 NR_DBD_HNF4A DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers. DNA-binding domain of hepatocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. HNF4 interacts with a DNA site, composed of two direct repeats of AGTTCA with 1 bp spacer, which is upstream of target genes and modulates the rate of transcriptional initiation. HNF4 is a member of the nuclear receptor superfamily. HNF4 plays a key role in establishing and maintenance of hepatocyte differentiation in the liver. It is also expressed in gut, kidney, and pancreatic beta cells. HNF4 was originally classified as an orphan receptor, but later it is found that HNF4 binds with very high affinity to a variety of fatty acids. However, unlike other nuclear receptors, the ligands do not act as a molecular switch for HNF4. They seem to constantly bind to the receptor, which is
Probab=22.42 E-value=51 Score=23.79 Aligned_cols=27 Identities=37% Similarity=0.810 Sum_probs=20.3
Q ss_pred CcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019768 35 CADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 35 C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
|.=||.+.- ...||++.|..|++..|-
T Consensus 1 C~vCg~~~~---~~hygv~~C~aC~~FFrR 27 (76)
T cd06960 1 CAVCGDRAT---GKHYGVLSCNGCKGFFRR 27 (76)
T ss_pred CCccCccCc---ccEECcceeeeehheeCc
Confidence 555776443 468999999999998764
No 255
>cd07164 NR_DBD_PNR_like_1 DNA-binding domain of the photoreceptor cell-specific nuclear receptor (PNR) like proteins is composed of two C4-type zinc fingers. DNA-binding domain of the photoreceptor cell-specific nuclear receptor (PNR) like proteins is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. PNR interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. PNR is a member of nuclear receptor superfamily of the ligand-activated transcription factors. PNR is expressed only in the outer layer of retinal photoreceptor cells. It may be involved in the signaling pathway regulating photoreceptor differentiation and/or maintenance. It most likely binds to DNA as a homodimer. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, PNR has a central well conserved DNA binding domain (DBD), a variable N-t
Probab=22.30 E-value=51 Score=23.96 Aligned_cols=27 Identities=30% Similarity=0.676 Sum_probs=20.3
Q ss_pred CcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019768 35 CADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 35 C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
|.=||.+.. ...||+..|..|.+..|-
T Consensus 1 C~VCg~~~~---g~hyG~~~C~~C~~FFRR 27 (78)
T cd07164 1 CRVCGDRAS---GKHYGVPSCDGCRGFFKR 27 (78)
T ss_pred CcccCccCc---ceEECcchhhhhhhhhhh
Confidence 555776443 358999999999998764
No 256
>cd07179 2DBD_NR_DBD2 The second DNA-binding domain (DBD) of the 2DBD nuclear receptor is composed of two C4-type zinc fingers. The second DNA-binding domain (DBD) of the 2DBD nuclear receptor (NR) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. NRs interact with specific DNA sites upstream of the target gene and modulate the rate of transcriptional initiation. The proteins contain two DBDs in tandem, probably resulting from an ancient recombination event. The 2DBD-NRs are found only in flatworm species, mollusks and arthropods. Their biological function is unknown.
Probab=22.27 E-value=59 Score=23.39 Aligned_cols=27 Identities=30% Similarity=0.774 Sum_probs=20.3
Q ss_pred CcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019768 35 CADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 35 C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
|.=||.+.. ...||+..|..|++..|-
T Consensus 1 C~VCg~~~~---g~hygv~sC~aC~~FFRR 27 (74)
T cd07179 1 CRVCGGKSS---GFHFGALTCEGCKGFFRR 27 (74)
T ss_pred CcccCccCc---ceEECceeehhHHHHHHH
Confidence 555765443 368999999999998764
No 257
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=22.11 E-value=84 Score=26.00 Aligned_cols=38 Identities=21% Similarity=0.532 Sum_probs=25.8
Q ss_pred hHHHHHHHHhCCCCCCCcCCCCCCCCeEEeeeceEEcccchhhhccC
Q 019768 19 GKGRLKDLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSL 65 (336)
Q Consensus 19 ~~~~l~~~~~~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~l 65 (336)
..+.|+.+....+...|.-||-. +-..|..|.|-|+.+
T Consensus 86 L~~lL~~~~~~~~~~~C~~Cgg~---------rfv~C~~C~Gs~k~~ 123 (147)
T cd03031 86 LRKLLKGIRARAGGGVCEGCGGA---------RFVPCSECNGSCKVF 123 (147)
T ss_pred HHHHHhhcccccCCCCCCCCCCc---------CeEECCCCCCcceEE
Confidence 34455555444466679999863 345799999998775
No 258
>cd06963 NR_DBD_GR_like The DNA binding domain of GR_like nuclear receptors is composed of two C4-type zinc fingers. The DNA binding domain of GR_like nuclear receptors is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. It interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. This family of NRs includes four types of nuclear hormone receptors: glucocorticoid receptor (GR), mineralocorticoid receptor (MR), progesterone receptor (PR), and androgen receptor (AR). The receptors bind to common DNA elements containing a partial palindrome of the core sequence 5'-TGTTCT-3' with a 3bp spacer. These four receptors regulate some of the most fundamental physiological functions such as the stress response, metabolism, electrolyte homeostasis, immune function, growth, development, and reproduction. The NRs in this family have high sequence homology and sha
Probab=22.05 E-value=62 Score=23.23 Aligned_cols=27 Identities=26% Similarity=0.648 Sum_probs=20.2
Q ss_pred CcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019768 35 CADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 35 C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
|.=||.+. ....||++.|..|.+..|-
T Consensus 1 C~VCg~~a---~~~hygv~sC~aCk~FFRR 27 (73)
T cd06963 1 CLICGDEA---SGCHYGVLTCGSCKVFFKR 27 (73)
T ss_pred CcccCccC---cceEECceeehhhhHhHHH
Confidence 44566543 3569999999999998864
No 259
>cd06958 NR_DBD_COUP_TF DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers. DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. COUP-TFs are orphan members of the steroid/thyroid hormone receptor superfamily. They are expressed in many tissues and are involved in the regulation of several important biological processes, such as neurogenesis, organogenesis, cell fate determination, and metabolic homeostasis. COUP-TFs homodimerize or heterodimerize with retinoid X receptor (RXR) and a few other nuclear receptors and bind to a variety of response elements that are composed of imperfect AGGTCA direct or inverted repeats with various spacings. COUP-TFs are generally considered to be repressors of transcription for other nuclear hormone recept
Probab=22.04 E-value=50 Score=23.66 Aligned_cols=27 Identities=26% Similarity=0.716 Sum_probs=20.3
Q ss_pred CcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019768 35 CADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 35 C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
|.=||.+.. ...||+..|..|++..|-
T Consensus 1 C~VCg~~~~---g~hygv~sC~aC~~FFRR 27 (73)
T cd06958 1 CVVCGDKSS---GKHYGQFTCEGCKSFFKR 27 (73)
T ss_pred CCccCccCc---ceEEChhhhhhhhhhhhh
Confidence 455665443 468999999999998764
No 260
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=22.03 E-value=1.1e+02 Score=23.05 Aligned_cols=40 Identities=28% Similarity=0.648 Sum_probs=29.6
Q ss_pred ChHHHHHHHHh-CCCCCCCcCCCCCCCCeEEeeeceEEcccch
Q 019768 18 SGKGRLKDLLL-QRDNRICADCGAPDPKWASANIGVFICLKCC 59 (336)
Q Consensus 18 ~~~~~l~~~~~-~~~N~~C~dC~~~~p~w~s~~~g~f~C~~C~ 59 (336)
+.++.+++|-. +..--.|.-|+...- --...||+-|..|-
T Consensus 21 slRK~v~kie~~q~a~y~CpfCgk~~v--kR~a~GIW~C~~C~ 61 (90)
T PRK03976 21 KIRKRVADIEEKMRAKHVCPVCGRPKV--KRVGTGIWECRKCG 61 (90)
T ss_pred HHHHHHHHHHHHHhcCccCCCCCCCce--EEEEEEEEEcCCCC
Confidence 45777777765 556679999986554 34578999999993
No 261
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=22.02 E-value=66 Score=28.10 Aligned_cols=46 Identities=24% Similarity=0.645 Sum_probs=29.5
Q ss_pred HHHHHHHHhCC--CCCCCcCCCCCCCCeEEee-eceEEcccchhhhccCC
Q 019768 20 KGRLKDLLLQR--DNRICADCGAPDPKWASAN-IGVFICLKCCGVHRSLG 66 (336)
Q Consensus 20 ~~~l~~~~~~~--~N~~C~dC~~~~p~w~s~~-~g~f~C~~C~~~hr~lg 66 (336)
.+.|+.++..= .=-.|..|+++++.-+--+ .-...|..| |.||...
T Consensus 84 ~~~i~~~l~~yi~~yV~C~~C~~pdT~l~k~~~~~~l~C~aC-Ga~~~v~ 132 (201)
T PRK12336 84 EEDIQAAIDAYVDEYVICSECGLPDTRLVKEDRVLMLRCDAC-GAHRPVK 132 (201)
T ss_pred HHHHHHHHHHHHHheEECCCCCCCCcEEEEcCCeEEEEcccC-CCCcccc
Confidence 55666666543 3458999999998776433 223468888 4555543
No 262
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=21.99 E-value=27 Score=29.28 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=23.6
Q ss_pred HHHHHHHhCCC-CC--CCcCCCCCCCCeEEeeeceEEcccchhh
Q 019768 21 GRLKDLLLQRD-NR--ICADCGAPDPKWASANIGVFICLKCCGV 61 (336)
Q Consensus 21 ~~l~~~~~~~~-N~--~C~dC~~~~p~w~s~~~g~f~C~~C~~~ 61 (336)
+.|++-+.... |. .|..|+.+-+.==.+++ -|.|..|-+.
T Consensus 95 ~~lk~~l~~e~~~~~Y~Cp~c~~r~tf~eA~~~-~F~Cp~Cg~~ 137 (158)
T TIGR00373 95 KKLREKLEFETNNMFFICPNMCVRFTFNEAMEL-NFTCPRCGAM 137 (158)
T ss_pred HHHHHHHhhccCCCeEECCCCCcEeeHHHHHHc-CCcCCCCCCE
Confidence 34444444333 33 69999975432222344 4999999765
No 263
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=21.70 E-value=53 Score=20.90 Aligned_cols=24 Identities=33% Similarity=0.920 Sum_probs=16.3
Q ss_pred CCCCcCCCCCCCCeEEeeeceEEcccc
Q 019768 32 NRICADCGAPDPKWASANIGVFICLKC 58 (336)
Q Consensus 32 N~~C~dC~~~~p~w~s~~~g~f~C~~C 58 (336)
+..|.+|+.+--+ ..-|..+|..|
T Consensus 17 ~~~Cp~C~~PL~~---~k~g~~~Cv~C 40 (41)
T PF06677_consen 17 DEHCPDCGTPLMR---DKDGKIYCVSC 40 (41)
T ss_pred cCccCCCCCeeEE---ecCCCEECCCC
Confidence 7899999865222 24466778877
No 264
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=21.42 E-value=28 Score=20.13 Aligned_cols=17 Identities=35% Similarity=0.790 Sum_probs=9.9
Q ss_pred hCCCCCCCcCCCCCCCC
Q 019768 28 LQRDNRICADCGAPDPK 44 (336)
Q Consensus 28 ~~~~N~~C~dC~~~~p~ 44 (336)
+.+.+..|.-|+++.|.
T Consensus 14 N~~~~~~C~~C~~~rp~ 30 (30)
T PF00641_consen 14 NPASRSKCVACGAPRPG 30 (30)
T ss_dssp EESSSSB-TTT--BTTB
T ss_pred chHHhhhhhCcCCCCcC
Confidence 45667888888887763
No 265
>cd06959 NR_DBD_EcR_like The DNA-binding domain of Ecdysone receptor (EcR) like nuclear receptor family is composed of two C4-type zinc fingers. The DNA-binding domain of Ecdysone receptor (EcR) like nuclear receptor family is composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. EcR interacts with specific DNA sites upstream of the target gene and modulates the rate of transcriptional initiation. This family includes three types of nuclear receptors: Ecdysone receptor (EcR), Liver X receptor (LXR) and Farnesoid X receptor (FXR). The DNA binding activity is regulated by their corresponding ligands. The ligands for EcR are ecdysteroids; LXR is regulated by oxidized cholesterol derivatives or oxysterols; and bile acids control FXR's activities. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, EcR-like receptors have a central well conserved DNA binding domai
Probab=21.25 E-value=64 Score=23.11 Aligned_cols=27 Identities=33% Similarity=0.768 Sum_probs=21.0
Q ss_pred CcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019768 35 CADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 35 C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
|.=||.+.. ...||+..|..|++..|-
T Consensus 2 C~vCg~~~~---~~hygv~sC~aC~~FFRR 28 (73)
T cd06959 2 CVVCGDKAS---GFHYGVLSCEGCKGFFRR 28 (73)
T ss_pred CceeCCcCc---ceEECceeehhhHHHHHH
Confidence 666776443 469999999999998864
No 266
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=21.07 E-value=82 Score=25.63 Aligned_cols=44 Identities=23% Similarity=0.501 Sum_probs=28.0
Q ss_pred HHHHHHHHhC--CCCCCCcCCCCCCCCeEEeeec-eEEcccchhhhcc
Q 019768 20 KGRLKDLLLQ--RDNRICADCGAPDPKWASANIG-VFICLKCCGVHRS 64 (336)
Q Consensus 20 ~~~l~~~~~~--~~N~~C~dC~~~~p~w~s~~~g-~f~C~~C~~~hr~ 64 (336)
.+.|+.++.. ..=-.|-.|+++++.-+--+-. ...|..| |.+|.
T Consensus 83 ~~~i~~~L~~yI~~yVlC~~C~sPdT~l~k~~r~~~l~C~AC-Ga~~~ 129 (133)
T TIGR00311 83 HFLLNERIEDYVRKYVICRECNRPDTRIIKEGRVSLLKCEAC-GAKAP 129 (133)
T ss_pred HHHHHHHHHHHHhheEECCCCCCCCcEEEEeCCeEEEecccC-CCCCc
Confidence 4556666654 3345899999999876643322 3478888 33443
No 267
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=20.82 E-value=90 Score=19.54 Aligned_cols=26 Identities=23% Similarity=0.744 Sum_probs=18.2
Q ss_pred CCcCCCCCCCCeEEee--------eceEEcccch
Q 019768 34 ICADCGAPDPKWASAN--------IGVFICLKCC 59 (336)
Q Consensus 34 ~C~dC~~~~p~w~s~~--------~g~f~C~~C~ 59 (336)
.|..||.....|..+- .-.|+|.+|.
T Consensus 2 ~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~ 35 (40)
T smart00440 2 PCPKCGNREATFFQLQTRSADEPMTVFYVCTKCG 35 (40)
T ss_pred cCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCC
Confidence 5888988877776432 2367888884
No 268
>PF06689 zf-C4_ClpX: ClpX C4-type zinc finger; InterPro: IPR010603 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The ClpX heat shock protein of Escherichia coli is a member of the universally conserved Hsp100 family of proteins, and possesses a putative zinc finger motif of the C4 type []. This presumed zinc binding domain (ZBD) is found at the N terminus of the ClpX protein. ClpX is an ATPase which functions both as a substrate specificity component of the ClpXP protease and as a molecular chaperone. ZBD is a member of the treble clef zinc finger family, a motif known to facilitate protein-ligand, protein-DNA, and protein-protein interactions and forms a constitutive dimer that is essential for the degradation of some, but not all, ClpX substrates []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0016887 ATPase activity, 0046983 protein dimerization activity, 0006200 ATP catabolic process, 0019538 protein metabolic process; PDB: 2DS8_B 2DS6_B 2DS5_A 1OVX_A 2DS7_A.
Probab=20.74 E-value=75 Score=20.03 Aligned_cols=29 Identities=31% Similarity=0.810 Sum_probs=16.9
Q ss_pred CCCcCCCCCCC---CeEEeeeceEEcccchhh
Q 019768 33 RICADCGAPDP---KWASANIGVFICLKCCGV 61 (336)
Q Consensus 33 ~~C~dC~~~~p---~w~s~~~g~f~C~~C~~~ 61 (336)
+.|.=||.+.. .-++-+-+++||..|...
T Consensus 2 ~~CSFCgr~~~~v~~li~g~~~~~IC~~Cv~~ 33 (41)
T PF06689_consen 2 KRCSFCGRPESEVGRLISGPNGAYICDECVEQ 33 (41)
T ss_dssp -B-TTT--BTTTSSSEEEES-SEEEEHHHHHH
T ss_pred CCccCCCCCHHHHhceecCCCCcEECHHHHHH
Confidence 46777887543 445555589999999753
No 269
>cd07155 NR_DBD_ER_like DNA-binding domain of estrogen receptor (ER) and estrogen related receptors (ERR) is composed of two C4-type zinc fingers. DNA-binding domains of estrogen receptor (ER) and estrogen related receptors (ERR) are composed of two C4-type zinc fingers. Each zinc finger contains a group of four Cys residues which co-ordinates a single zinc atom. ER and ERR interact with the palindromic inverted repeat, 5'GGTCAnnnTGACC-3', upstream of the target gene and modulate the rate of transcriptional initiation. ERR and ER are closely related and share sequence similarity, target genes, co-regulators and promoters. While ER is activated by endogenous estrogen, ERR lacks the ability to bind to estrogen. Estrogen receptor mediates the biological effects of hormone estrogen by the binding of the receptor dimer to estrogen response element of target genes. However, ERRs seem to interfere with the classic ER-mediated estrogen responsive signaling by targeting the same set of genes. E
Probab=20.69 E-value=51 Score=23.79 Aligned_cols=27 Identities=26% Similarity=0.584 Sum_probs=20.5
Q ss_pred CcCCCCCCCCeEEeeeceEEcccchhhhcc
Q 019768 35 CADCGAPDPKWASANIGVFICLKCCGVHRS 64 (336)
Q Consensus 35 C~dC~~~~p~w~s~~~g~f~C~~C~~~hr~ 64 (336)
|.=||.+.. ...||+..|..|++..|-
T Consensus 1 C~VC~~~~~---g~hygv~sC~aCk~FFRR 27 (75)
T cd07155 1 CLVCGDIAS---GYHYGVASCEACKAFFKR 27 (75)
T ss_pred CcccCccCc---ceEEChhhhhhhHHHHHH
Confidence 556775433 469999999999998764
No 270
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=20.17 E-value=48 Score=20.98 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=15.8
Q ss_pred CCcCCCCCCCCeEEeee-ceEEcccchh
Q 019768 34 ICADCGAPDPKWASANI-GVFICLKCCG 60 (336)
Q Consensus 34 ~C~dC~~~~p~w~s~~~-g~f~C~~C~~ 60 (336)
.|-+||..--.+.++.- ....|..|.+
T Consensus 7 ~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 7 RCEECGHEFEVLQSISEDDPVPCPECGS 34 (42)
T ss_pred EeCCCCCEEEEEEEcCCCCCCcCCCCCC
Confidence 46777765555555433 4556777744
No 271
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=20.09 E-value=26 Score=23.36 Aligned_cols=30 Identities=27% Similarity=0.536 Sum_probs=20.1
Q ss_pred CCcCCCCCCCCeE--EeeeceEEcccchhhhcc
Q 019768 34 ICADCGAPDPKWA--SANIGVFICLKCCGVHRS 64 (336)
Q Consensus 34 ~C~dC~~~~p~w~--s~~~g~f~C~~C~~~hr~ 64 (336)
.|+=||..-.-.- -+.=| +||..|..--..
T Consensus 1 ~C~iCg~kigl~~~~k~~DG-~iC~~C~~Kl~~ 32 (51)
T PF14471_consen 1 KCAICGKKIGLFKRFKIKDG-YICKDCLKKLSG 32 (51)
T ss_pred CCCccccccccccceeccCc-cchHHHHHHhcC
Confidence 4888888644433 35557 899999865433
Done!