BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019770
(336 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ICX|A Chain A, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Utp
pdb|2ICX|B Chain B, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Utp
pdb|2ICY|A Chain A, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Udp- Glucose
pdb|2ICY|B Chain B, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Udp- Glucose
Length = 469
Score = 612 bits (1579), Expect = e-176, Method: Compositional matrix adjust.
Identities = 293/336 (87%), Positives = 315/336 (93%)
Query: 1 MNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHG 60
MNSFNTHDDT KI+EKY+ SNV+IHTFNQS+YPR+ AD+FVP P KGKTDK+GWYPPGHG
Sbjct: 134 MNSFNTHDDTHKIVEKYTNSNVDIHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHG 193
Query: 61 DVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNEYCMEVTPKTLA 120
DVFP+LMNSGKLD +SQGKEYVF ANSDNLGAIVDL IL HLIQNKNEYCMEVTPKTLA
Sbjct: 194 DVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTILKHLIQNKNEYCMEVTPKTLA 253
Query: 121 DVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADAL 180
DVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIK+LVEADAL
Sbjct: 254 DVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKKLVEADAL 313
Query: 181 KMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLY 240
KMEIIPNPKEVDG+KVLQLETAAGAAIRFFD+AIG NV RSRFLPVKA+SDLLLVQSDLY
Sbjct: 314 KMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGVNVPRSRFLPVKASSDLLLVQSDLY 373
Query: 241 TLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGAN 300
TL DGFVTRN+AR NP+NP+IELGPEFKKV FLSRFKSIPSI+ELDSLKV+GDVWFG++
Sbjct: 374 TLVDGFVTRNKARTNPSNPSIELGPEFKKVATFLSRFKSIPSIVELDSLKVSGDVWFGSS 433
Query: 301 ITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 336
I LKGKVT+AAKSG KLEIPD AV+ENK INGP DL
Sbjct: 434 IVLKGKVTVAAKSGVKLEIPDRAVVENKNINGPEDL 469
>pdb|1Z90|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g03250, A Putative Udp-Glucose Pyrophosphorylase
pdb|1Z90|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g03250, A Putative Udp-Glucose Pyrophosphorylase
pdb|2Q4J|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g03250, A
Putative Udp-Glucose Pyrophosphorylase
pdb|2Q4J|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g03250, A
Putative Udp-Glucose Pyrophosphorylase
Length = 469
Score = 612 bits (1579), Expect = e-176, Method: Compositional matrix adjust.
Identities = 293/336 (87%), Positives = 315/336 (93%)
Query: 1 MNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHG 60
MNSFNTHDDT KI+EKY+ SNV+IHTFNQS+YPR+ AD+FVP P KGKTDK+GWYPPGHG
Sbjct: 134 MNSFNTHDDTHKIVEKYTNSNVDIHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHG 193
Query: 61 DVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNEYCMEVTPKTLA 120
DVFP+LMNSGKLD +SQGKEYVF ANSDNLGAIVDL IL HLIQNKNEYCMEVTPKTLA
Sbjct: 194 DVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTILKHLIQNKNEYCMEVTPKTLA 253
Query: 121 DVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADAL 180
DVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIK+LVEADAL
Sbjct: 254 DVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKKLVEADAL 313
Query: 181 KMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQSDLY 240
KMEIIPNPKEVDG+KVLQLETAAGAAIRFFD+AIG NV RSRFLPVKA+SDLLLVQSDLY
Sbjct: 314 KMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGVNVPRSRFLPVKASSDLLLVQSDLY 373
Query: 241 TLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGAN 300
TL DGFVTRN+AR NP+NP+IELGPEFKKV FLSRFKSIPSI+ELDSLKV+GDVWFG++
Sbjct: 374 TLVDGFVTRNKARTNPSNPSIELGPEFKKVATFLSRFKSIPSIVELDSLKVSGDVWFGSS 433
Query: 301 ITLKGKVTIAAKSGEKLEIPDGAVLENKEINGPGDL 336
I LKGKVT+AAKSG KLEIPD AV+ENK INGP DL
Sbjct: 434 IVLKGKVTVAAKSGVKLEIPDRAVVENKNINGPEDL 469
>pdb|2I5K|A Chain A, Crystal Structure Of Ugp1p
pdb|2I5K|B Chain B, Crystal Structure Of Ugp1p
Length = 488
Score = 393 bits (1009), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/336 (58%), Positives = 249/336 (74%), Gaps = 5/336 (1%)
Query: 1 MNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPGHG 60
MNSFNT DT +I+KYS + + I +FNQS++PR+ D +P+P + + D WYPPGHG
Sbjct: 147 MNSFNTDKDTEHLIKKYSANRIRIRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHG 206
Query: 61 DVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNEYCMEVTPKTLA 120
D+F SL SG+LDALI+QG+E +F +N DNLGA VDLKILNH+I+ EY ME+T KT A
Sbjct: 207 DLFESLHVSGELDALIAQGREILFVSNGDNLGATVDLKILNHMIETGAEYIMELTDKTRA 266
Query: 121 DVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADAL 180
DVKGGTLISY+G+V+LLE+AQVP EH++EFK+I KF FNTNNLW+NLKA+KRL+E+ L
Sbjct: 267 DVKGGTLISYDGQVRLLEVAQVPKEHIDEFKNIRKFTNFNTNNLWINLKAVKRLIESSNL 326
Query: 181 KMEIIPNPKEV--DG--IKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDLLLVQ 236
+MEIIPN K + DG I VLQLETA GAAIR FD A G V RSRFLPVK SDLLLV+
Sbjct: 327 EMEIIPNQKTITRDGHEINVLQLETACGAAIRHFDGAHGVVVPRSRFLPVKTCSDLLLVK 386
Query: 237 SDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVW 296
SDL+ L G + + +R P NP I+LG FKKV F +R IP I+ELD L +TG+V+
Sbjct: 387 SDLFRLEHGSLKLDPSRFGP-NPLIKLGSHFKKVSGFNARIPHIPKIVELDHLTITGNVF 445
Query: 297 FGANITLKGKVTIAAKSGEKLEIPDGAVLENKEING 332
G ++TL+G V I G K++IP+G++LEN + G
Sbjct: 446 LGKDVTLRGTVIIVCSDGHKIDIPNGSILENVVVTG 481
>pdb|3R2W|A Chain A, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|B Chain B, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|C Chain C, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|D Chain D, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R3I|A Chain A, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|B Chain B, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|C Chain C, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|D Chain D, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
Length = 528
Score = 392 bits (1008), Expect = e-109, Method: Compositional matrix adjust.
Identities = 194/340 (57%), Positives = 253/340 (74%), Gaps = 8/340 (2%)
Query: 1 MNSFNTHDDTSKIIEKYSKSNVEIHTFNQSQYPRLCADDFVPLP---CKGKTDKDGWYPP 57
MNSFNT +DT KI++KY+ V+I+TFNQS+YPR+ + +P+ + + WYPP
Sbjct: 182 MNSFNTDEDTKKILQKYNHCRVKIYTFNQSRYPRINKESLLPVAKDVSYSGENTEAWYPP 241
Query: 58 GHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKN----EYCME 113
GHGD++ S NSG LD I +GKEY+F +N DNLGA VDL ILNHL+ N E+ ME
Sbjct: 242 GHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGATVDLYILNHLMNPPNGKRCEFVME 301
Query: 114 VTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKR 173
VT KT ADVKGGTL YEGK++L+EIAQVP HV+EFKS+ KFKIFNTNNLW++L A+KR
Sbjct: 302 VTNKTRADVKGGTLTQYEGKLRLVEIAQVPKAHVDEFKSVSKFKIFNTNNLWISLAAVKR 361
Query: 174 LVEADALKMEIIPNPKEVDG-IKVLQLETAAGAAIRFFDHAIGCNVHRSRFLPVKATSDL 232
L E +A+ MEII N K +DG + V+QLETA GAAI+ F++++G NV RSRFLPVK TSDL
Sbjct: 362 LQEQNAIDMEIIVNAKTLDGGLNVIQLETAVGAAIKSFENSLGINVPRSRFLPVKTTSDL 421
Query: 233 LLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVT 292
LLV S+LY+L G +T +E R+ P P ++LG F KV ++L RF+SIP ++ELD L V+
Sbjct: 422 LLVMSNLYSLNAGSLTMSEKREFPTVPLVKLGSSFTKVQDYLRRFESIPDMLELDHLTVS 481
Query: 293 GDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEING 332
GDV FG N++LKG V I A G++++IP GAVLENK ++G
Sbjct: 482 GDVTFGKNVSLKGTVIIIANHGDRIDIPPGAVLENKIVSG 521
>pdb|3GUE|A Chain A, Crystal Structure Of Udp-Glucose Phosphorylase From
Trypanosoma Brucei, (Tb10.389.0330)
pdb|3GUE|B Chain B, Crystal Structure Of Udp-Glucose Phosphorylase From
Trypanosoma Brucei, (Tb10.389.0330)
Length = 484
Score = 204 bits (519), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 127/355 (35%), Positives = 195/355 (54%), Gaps = 29/355 (8%)
Query: 1 MNSFNTHDDTSKIIEKYSK------SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGW 54
MNSF+T +T + KY S++E+ Q++ P++ D+F P+ + + W
Sbjct: 131 MNSFSTSGETKNFLRKYPTLYEVFDSDIELM---QNRVPKIRQDNFFPVTYEADPTCE-W 186
Query: 55 YPPGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNEYCMEV 114
PPGHGDV+ L +SGKLD L+ +G Y+F +N DNLGA +D+++L+++ + + + MEV
Sbjct: 187 VPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNLGATLDVRLLDYMHEKQLGFLMEV 246
Query: 115 TPKTLADVKGGTLI----------SYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNL 164
+T +D KGG L + L E AQ P E + F++I K FNTNN+
Sbjct: 247 CRRTESDKKGGHLAYKDVIDETTGQTRRRFVLRESAQCPKEDEDSFQNIAKHCFFNTNNI 306
Query: 165 WVNLKAIKRLVEAD--ALKMEIIPNPKEVD-----GIKVLQLETAAGAAIRFFDHAIGCN 217
W+NL +K++++ L++ ++ NPK V+ KV QLE A GAAI FD +
Sbjct: 307 WINLMELKKMMDEQLGVLRLPVMRNPKTVNPQDSQSTKVYQLEVAMGAAISLFDRSEAVV 366
Query: 218 VHRSRFLPVKATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIEL-GPEFKKVGNFLSR 276
V R RF PVK SDLL ++SD Y + + +N P I+L G +K + F
Sbjct: 367 VPRERFAPVKTCSDLLALRSDAYQVTEDQRLVLCEERNGKPPAIDLDGEHYKMIDGFEKL 426
Query: 277 FK-SIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEI 330
K +PS+ + SL V G V FGA+++++G V I E L I G VL+N+ +
Sbjct: 427 VKGGVPSLRQCTSLTVRGLVEFGADVSVRGNVVIKNLKEEPLIIGSGRVLDNEVV 481
>pdb|2OEF|A Chain A, Open And Closed Structures Of The Udp-Glucose
Pyrophosphorylase From Leishmania Major
pdb|2OEG|A Chain A, Open And Closed Structures Of The Udp-Glucose
Pyrophosphorylase From Leishmania Major
Length = 505
Score = 183 bits (465), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 126/355 (35%), Positives = 172/355 (48%), Gaps = 31/355 (8%)
Query: 2 NSFNTHDDTSKIIEK-----YSKSNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYP 56
+SFNT T ++ Y + E+ Q+Q P++ D P + W P
Sbjct: 131 DSFNTSASTKSFLKARYPWLYQVFDSEVE-LXQNQVPKILQDTLEP-AAWAENPAYEWAP 188
Query: 57 PGHGDVFPSLMNSGKLDALISQGKEYVFAANSDNLGAIVDLKILNHLIQNKNEYCMEVTP 116
PGHGD++ +L SGKL L+ QG Y F +N DNLGA +D ++L + + K ++ EV
Sbjct: 189 PGHGDIYTALYGSGKLQELVEQGYRYXFVSNGDNLGATIDKRVLAYXEKEKIDFLXEVCR 248
Query: 117 KTLADVKGGTLISY-------------EGKVQLL-EIAQVPDEHVNEFKSIEKFKIFNTN 162
+T +D KGG L E +V LL E AQ P F+ I K+ FNTN
Sbjct: 249 RTESDKKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQCPKADXESFQDINKYSFFNTN 308
Query: 163 NLWVNLKAIKRLVE--ADALKMEIIPNPKEVDGI-----KVLQLETAAGAAIRFFDHAIG 215
NLW+ L + + L + +I N K VD KV QLETA GAAI F+ A
Sbjct: 309 NLWIRLPVLLETXQEHGGTLPLPVIRNEKTVDSSNSASPKVYQLETAXGAAIAXFESASA 368
Query: 216 CNVHRSRFLPVKATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLS 275
V RSRF PVK +DLL ++SD Y + D F + R + P ++L K N
Sbjct: 369 IVVPRSRFAPVKTCADLLALRSDAYVVTDDFRLVLDDRCHGHPPVVDLDSAHYKXXNGFE 428
Query: 276 RF--KSIPSIIELDSLKVTGDVWFGANITLKGKVTIA-AKSGEKLEIPDGAVLEN 327
+ +PS++E + V G V FGA L G VTI S IPDGA L +
Sbjct: 429 KLVQHGVPSLVECKRVTVKGLVQFGAGNVLTGTVTIENTDSASAFVIPDGAKLND 483
>pdb|3OC9|A Chain A, Crystal Structure Of Putative Udp-N-Acetylglucosamine
Pyrophosphorylase From Entamoeba Histolytica
Length = 405
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 104/213 (48%), Gaps = 28/213 (13%)
Query: 6 THDDTSKIIEKYSK-------SNVEIHTFNQSQYPRLCADDFVPLPCKGKTDKDGWYPPG 58
T+++T + I Y K S+ +IH F Q P + DF K DK P G
Sbjct: 100 TNEETIEEINNYFKEHQYFGLSSEQIHCFPQGMLPVV---DFNGKILYEKKDKPYMAPNG 156
Query: 59 HGDVFPSLMNSGKLDALISQGKEYVFAANSDN-LGAIVDLKILNHLIQNKNEYCMEVTPK 117
HG +F +L ++G L+ + +G +Y A N DN L VD ++ ++ ++E C+++ K
Sbjct: 157 HGGLFKALKDNGILEFMNEKGIKYSVAHNVDNILCKDVDPNMIGYMDLLQSEICIKIVKK 216
Query: 118 TLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEA 177
+ K G L+ + +++++E ++ DE +N+ S +F I+N ++ +N + L +A
Sbjct: 217 GFKEEKVGVLVKEQERIKVVEYTELTDE-LNKQLSNGEF-IYNCGHISINGYSTSFLEKA 274
Query: 178 DALKME---------------IIPNPKEVDGIK 195
++ I+ +P E +GIK
Sbjct: 275 AEYQLPYHIAKKKVPFVNEQGIVIHPSENNGIK 307
>pdb|3ACL|A Chain A, Crystal Structure Of Human Pirin In Complex With Triphenyl
Compound
Length = 296
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 163 NLWVNLKAIKRLVEA--DALKMEIIPNPKEVDGIKVLQLETAA---------GAAIRFFD 211
LWVNL++ +++VE LK E IP P + DG+ V + A + D
Sbjct: 121 QLWVNLRSSEKMVEPQYQELKSEEIPKPSK-DGVTVAVISGEALGIKSKVYTRTPTLYLD 179
Query: 212 HAIGCNVHRSRFLPVKATSDLLLVQSDLYTLAD 244
+ S+ +P TS + + D+Y D
Sbjct: 180 FKLDPGAKHSQPIPKGWTSFIYTISGDVYIGPD 212
>pdb|1J1L|A Chain A, Crystal Structure Of Human Pirin: A Bcl-3 And Nuclear
Factor I Interacting Protein And A Cupin Superfamily
Member
Length = 290
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 12/93 (12%)
Query: 163 NLWVNLKAIKRLVEA--DALKMEIIPNPKEVDGIKVLQLETAA---------GAAIRFFD 211
LWVNL++ ++ VE LK E IP P + DG+ V + A + D
Sbjct: 115 QLWVNLRSSEKXVEPQYQELKSEEIPKPSK-DGVTVAVISGEALGIKSKVYTRTPTLYLD 173
Query: 212 HAIGCNVHRSRFLPVKATSDLLLVQSDLYTLAD 244
+ S+ +P TS + + D+Y D
Sbjct: 174 FKLDPGAKHSQPIPKGWTSFIYTISGDVYIGPD 206
>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|C Chain C, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 263
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 23 EIHTFNQSQYPRLCADDFVPLPCKG-KTDKDGWYPPGHGDVFPSLMNSGKLDA 74
EI++F + YPR+ D VP KG K D PP V+ + N LDA
Sbjct: 191 EIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPA---VYEVMKNCWHLDA 240
>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In
Complex With Inhibitor Staurosporine
Length = 278
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 23 EIHTFNQSQYPRLCADDFVPLPCKG-KTDKDGWYPPGHGDVFPSLMNSGKLDALI 76
EI++F + YPR+ D VP KG K D PP V+ + N LDA +
Sbjct: 206 EIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPA---VYEVMKNCWHLDAAM 257
>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 269
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 23 EIHTFNQSQYPRLCADDFVPLPCKG-KTDKDGWYPPGHGDVFPSLMNSGKLDA 74
EI++F + YPR+ D VP KG K D PP V+ + N LDA
Sbjct: 197 EIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPA---VYEVMKNCWHLDA 246
>pdb|1WOG|A Chain A, Crystal Structure Of Agmatinase Reveals Structural
Conservation And Inhibition Mechanism Of The
Ureohydrolase Superfamily
pdb|1WOG|B Chain B, Crystal Structure Of Agmatinase Reveals Structural
Conservation And Inhibition Mechanism Of The
Ureohydrolase Superfamily
pdb|1WOG|C Chain C, Crystal Structure Of Agmatinase Reveals Structural
Conservation And Inhibition Mechanism Of The
Ureohydrolase Superfamily
pdb|1WOG|D Chain D, Crystal Structure Of Agmatinase Reveals Structural
Conservation And Inhibition Mechanism Of The
Ureohydrolase Superfamily
pdb|1WOG|E Chain E, Crystal Structure Of Agmatinase Reveals Structural
Conservation And Inhibition Mechanism Of The
Ureohydrolase Superfamily
pdb|1WOG|F Chain F, Crystal Structure Of Agmatinase Reveals Structural
Conservation And Inhibition Mechanism Of The
Ureohydrolase Superfamily
pdb|1WOH|A Chain A, Crystal Structure Of Agmatinase Reveals Structural
Conservation And Inhibition Mechanism Of The
Ureohydrolase Superfamily
pdb|1WOH|B Chain B, Crystal Structure Of Agmatinase Reveals Structural
Conservation And Inhibition Mechanism Of The
Ureohydrolase Superfamily
pdb|1WOH|C Chain C, Crystal Structure Of Agmatinase Reveals Structural
Conservation And Inhibition Mechanism Of The
Ureohydrolase Superfamily
pdb|1WOH|D Chain D, Crystal Structure Of Agmatinase Reveals Structural
Conservation And Inhibition Mechanism Of The
Ureohydrolase Superfamily
pdb|1WOH|E Chain E, Crystal Structure Of Agmatinase Reveals Structural
Conservation And Inhibition Mechanism Of The
Ureohydrolase Superfamily
pdb|1WOH|F Chain F, Crystal Structure Of Agmatinase Reveals Structural
Conservation And Inhibition Mechanism Of The
Ureohydrolase Superfamily
pdb|1WOI|A Chain A, Crystal Structure Of Agmatinase Reveals Structural
Conservation And Inhibition Mechanism Of The
Ureohydrolase Superfamily
pdb|1WOI|B Chain B, Crystal Structure Of Agmatinase Reveals Structural
Conservation And Inhibition Mechanism Of The
Ureohydrolase Superfamily
pdb|1WOI|C Chain C, Crystal Structure Of Agmatinase Reveals Structural
Conservation And Inhibition Mechanism Of The
Ureohydrolase Superfamily
pdb|1WOI|D Chain D, Crystal Structure Of Agmatinase Reveals Structural
Conservation And Inhibition Mechanism Of The
Ureohydrolase Superfamily
pdb|1WOI|E Chain E, Crystal Structure Of Agmatinase Reveals Structural
Conservation And Inhibition Mechanism Of The
Ureohydrolase Superfamily
pdb|1WOI|F Chain F, Crystal Structure Of Agmatinase Reveals Structural
Conservation And Inhibition Mechanism Of The
Ureohydrolase Superfamily
Length = 305
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 136 LLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVD--G 193
L A VPD HV + + F + W N +R EA +PN + G
Sbjct: 128 LRAFADVPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEA-------LPNLVHITTVG 180
Query: 194 IKVLQLETAAGAAIRFFDHAI 214
++ L+ + A AA R H I
Sbjct: 181 LRGLRFDPEAVAAARARGHTI 201
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 23 EIHTFNQSQYPRLCADDFVPLPCKG-KTDKDGWYPPGHGDVFPSLMNSGKLDA 74
EI++F + YPR+ D VP KG K D PP V+ + N LDA
Sbjct: 378 EIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPA---VYDVMKNCWHLDA 427
>pdb|3UPI|A Chain A, Synthesis Of Novel 4,5-Dihydrofurano Indoles And Their
Evaluation As Hcv Ns5b Polymerase Inhibitors
pdb|3UPI|B Chain B, Synthesis Of Novel 4,5-Dihydrofurano Indoles And Their
Evaluation As Hcv Ns5b Polymerase Inhibitors
Length = 585
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 40 FVPLPCKGKTDKDGWYPPGH--GDVFPSLMNSGKLDALISQGKE 81
P+P + D GW+ G+ GD++ SL + + L QG E
Sbjct: 536 LTPIPAASQLDLSGWFVAGYSGGDIYHSLSRARPRENLYFQGLE 579
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,539,994
Number of Sequences: 62578
Number of extensions: 445804
Number of successful extensions: 1137
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1118
Number of HSP's gapped (non-prelim): 16
length of query: 336
length of database: 14,973,337
effective HSP length: 99
effective length of query: 237
effective length of database: 8,778,115
effective search space: 2080413255
effective search space used: 2080413255
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)