Citrus Sinensis ID: 019774

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330------
Protein Sequence
MDLNDLNKVWEVKALKKIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRARHGALLPSGPNRIGGDSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVREDVGSSTDASESSKTSSVSNNRSGQTSSLQPSSGQKAVDVGQMWQCNMCTLLNQPLALTCEACGTQRNKSVGNLKGWSCKFCTLDNSSLSERCLACGEWRYSNGPPISTPGPYPGT
Secondary Structure (PSIPRED)
ccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccccccccEEcccccEEEEEEEccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccccEEEEEcccccEEEEEEEccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccEccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccEEEccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MDLNDLNKVWEVKALKKIGEDDARQILEKVAKQVQPIMRKHKWKVRILsefcpanpsllginigggaevklrlrrpnrewdffpyEQILDTMLHELchneygphnadfYKLWDEIRKECDELMAKgitgtgkgfdlpgrrlggfsrqpplsQLRQSALAAAENRArhgallpsgpnriggdssiKAALSPIQAAAMAAERRLhddmwcgskslnsdidvredvgsstdasessktssvsnnrsgqtsslqpssgqkavdVGQMWQCnmctllnqplaltceacgtqrnksvgnlkgwsckfctldnsslSERCLacgewrysngppistpgpypgt
Flexible Loop (DISEMBL)
MDLNDLNKVWEVKAlkkigeddaRQILEKVakqvqpimrkHKWKVRILSEFcpanpsllginiGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRARhgallpsgpnriGGDSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVREDVGsstdasessktssvsnnrsgqtsslqpssgQKAVDVGQMWQCNMCTLLNQPLALTCEACGTQRNKsvgnlkgwsCKFCTLDNSSLSERCLACGEwrysngppistpgpypgt
Low Complexity Region (SEG)
MDLNDLNKVWEVKALKKIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKGFDLPGRRLGGFSRQPPlsqlrqsalaaaENRARHGALLPSGPNRIGGDSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVREDVGsstdasessktssvsnnrsGQTSSLQPSSGQKAVDVGQMWQCNMCTLLNQPLALTCEACGTQRNKSVGNLKGWSCKFCTLDNSSLSERCLACGEWRYSNGPPISTPGPYPGT
Disordered region (IsUnstruct)
******NKVWEVKALKKIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKGFDL*********************************************************************MWC*************************************************VDVGQMWQCNMCTLLNQPLALTCEACGTQRNKSVGNLKGWSCKFCTLDNSSLSERCLACGEWRY***************
Disordered Region (DISOPRED)
***NDLNKVWEVKALKKIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITG**********************************************************************RRLHDDMWCGSKSLNSDIDVREDVGSSTDASESSKTSSVSNNRSGQTSSLQPSSGQKAVDVGQMWQCNMCTLLN****************************CTLDNSSLSERCLA*********************
Disordered Region (DISEMBL)
MDLNDLNKVWEVKALKKIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRARHGALLPSGPNRIGGDSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVR**************************************DVGQMWQCNMCTLLNQPLALTCEACGTQRNKSVGNLKGWSCKFCTLDNSSLSERCLACGEWRYSNGPPISTPGPYPGT
Disordered Region (DISPRO)
*DLNDLNKVWEVKALKKIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKGFDLPGRRLGGFS****L******ALAAAENR*R*************************************************************************************************WQCNMCTLLNQPLALTCEACGTQRNKSVGNLKGWSCKFCTLDNSSLSERCLACGE******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDLNDLNKVWEVKALKKIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRARHGALLPSGPNRIGGDSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVREDVGSSTDASESSKTSSVSNNRSGQTSSLQPSSGQKAVDVGQMWQCNMCTLLNQPLALTCEACGTQRNKSVGNLKGWSCKFCTLDNSSLSERCLACGEWRYSNGPPISTPGPYPGT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	336	2.2.26 [Sep-21-2011]
P38838	269	DNA damage response prote	yes	no	0.630	0.788	0.342	4e-27
O94580	282	Ubiquitin and WLM domain-	yes	no	0.443	0.528	0.308	9e-12
Q9P7B5	283	DNA damage response prote	no	no	0.363	0.431	0.336	1e-11
P27398	1594	Calpain-D OS=Drosophila m	no	no	0.169	0.035	0.369	7e-05

>sp|P38838|WSS1_YEAST DNA damage response protein WSS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=WSS1 PE=1 SV=1

 Score =  122 bits (305), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 121/228 (53%), Gaps = 16/228 (7%)

Query: 9   VWEVKALK-KIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGA 67
           + +V  L+ K  ++DA  +++++A +V  +M+++ +KV  L EF P +  LLG+N+  G+
Sbjct: 29  IQKVAVLQSKPNKEDALNLIKEIAHKVSYLMKENHFKVTNLVEFYPRDQRLLGMNVNHGS 88

Query: 68  EVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGI 127
           ++ LRLR    E+ F P E I+ TMLHEL HN +GPH+  FY   DE+      +  +G+
Sbjct: 89  KIMLRLRCSTDEFQFLPMECIMGTMLHELTHNLFGPHDKKFYNKLDELIGRQWVIEQRGL 148

Query: 128 TGTGKGFDLPGRRLGGFS-----RQPPLSQLRQSALAAAENR-ARHGALLPSGPNRIGGD 181
             T  G    G+RLGG +     R P       + +     +  + G+L P G       
Sbjct: 149 YDTFLG---NGQRLGGRANLRSNRYPMTGISTNTGIVRKRGKGVKLGSLHPEGI------ 199

Query: 182 SSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVREDVGSSTDA 229
           SSI    SP + AA AAERR  DD WCG    N D  + +++ SS + 
Sbjct: 200 SSIDRGNSPRELAAFAAERRYRDDRWCGETKNNKDQIISDNISSSLEV 247

Involved in DNA damage response and processing of stalled or collapsed replication forks. May be involved in a sumoylation pathway.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O94580|YQ77_SCHPO Ubiquitin and WLM domain-containing protein C1442.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1442.07c PE=4 SV=1

 Score = 71.2 bits (173), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 26/175 (14%)

Query: 11  EVKALKKIGEDDARQILEKVAKQ--VQPIMRKHKWKVRILSEFCPA-----NPSLLGINI 63
           E+  L    +D A + LE++     ++ IM  H+W V +LSE  PA     +   LG+N 
Sbjct: 113 ELVVLDYPHKDRALRYLERLRDDTGIKKIMDSHRWTVPLLSEMDPAEHTRHDSKTLGLNH 172

Query: 64  GGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELM 123
             GA ++LRLR  +R   F  Y+ +  T++HEL HN +G H++ F++L+ ++ KE D   
Sbjct: 173 NQGAHIELRLR-TDRYDGFRDYKTVKSTLIHELTHNVHGEHDSSFWELFRQLTKEAD--- 228

Query: 124 AKGITGTGKGFDLPGRRLGGFSRQPPL---------SQLRQSALAAAENRARHGA 169
           A  + G       PG  +   +   P          +  R   LAAAE R + G+
Sbjct: 229 AADLLGK------PGSYVSDRASYTPQQDNDDEDQKNHRRDLLLAAAERRKQSGS 277

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9P7B5|WSS1_SCHPO DNA damage response protein wss1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=wss1 PE=3 SV=1

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 3/125 (2%)

Query: 8   KVWEVKALKKIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGA 67
           K+  + A+K    D +   L+++A    PIM++H + V  L E    N    G N   G 
Sbjct: 34  KIGFISAIKGDFHDLSSDYLKRIAAMAFPIMKEHGFGVTSLDE-VAYNAKFWGRNWNKGE 92

Query: 68  EVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGI 127
            ++L LR  +  W   P+E ++D  LHELCH   GPH+  F+     +R     L AKG 
Sbjct: 93  CIELVLRDASNRW--LPFEFVMDVFLHELCHIWQGPHDRRFFSHLSTLRAALIALYAKGY 150

Query: 128 TGTGK 132
            G GK
Sbjct: 151 KGPGK 155

Involved in DNA damage response and processing of stalled or collapsed replication forks. May be involved in a sumoylation pathway.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P27398|CAND_DROME Calpain-D OS=Drosophila melanogaster GN=sol PE=1 SV=2

 Score = 48.5 bits (114), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 8/65 (12%)

Query: 264 WQCNMCTLLNQPLALTCEACGTQRNKSVGNLKG--------WSCKFCTLDNSSLSERCLA 315
           W C  CTL+N   A+ C  CG  + KS+ +++         W+C  CTL NS  S  C A
Sbjct: 708 WTCKKCTLVNYSTAMACVVCGGSKLKSISSIEDMTLRKGEFWTCSHCTLKNSLHSPVCSA 767

Query: 316 CGEWR 320
           C   R
Sbjct: 768 CKSHR 772

Calcium-regulated non-lysosomal thiol-protease.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	336
255564031	326	conserved hypothetical protein [Ricinus	0.967	0.996	0.736	1e-142
224097470	331	predicted protein [Populus trichocarpa]	0.964	0.978	0.725	1e-138
225461874	366	PREDICTED: DNA damage response protein W	0.988	0.907	0.616	1e-126
224116656	388	predicted protein [Populus trichocarpa]	1.0	0.865	0.556	1e-115
413952857	346	putative uncharacterized protein hypro4	0.982	0.953	0.571	1e-105
297847960	401	zinc ion binding protein [Arabidopsis ly	1.0	0.837	0.516	1e-103
255563536	404	conserved hypothetical protein [Ricinus	0.988	0.821	0.485	1e-102
218197734	352	hypothetical protein OsI_21977 [Oryza sa	0.985	0.940	0.562	1e-101
51091111	352	unknown protein [Oryza sativa Japonica G	0.985	0.940	0.56	1e-100
297605345	400	Os06g0191200 [Oryza sativa Japonica Grou	0.985	0.827	0.56	1e-100

>gi|255564031|ref|XP_002523014.1| conserved hypothetical protein [Ricinus communis] gi|223537736|gb|EEF39356.1| conserved hypothetical protein [Ricinus communis]

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 243/330 (73%), Positives = 277/330 (83%), Gaps = 5/330 (1%)

Query: 1   MDLNDLNKVWEVKALK-KIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLL 59
           MDLNDLNK+WEVK LK KIGE+DA  +LEKVAKQVQPIMR H WKVRILSEFCP+NPSL+
Sbjct: 1   MDLNDLNKIWEVKPLKNKIGEEDAMILLEKVAKQVQPIMRNHHWKVRILSEFCPSNPSLM 60

Query: 60  GINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKEC 119
           G+NIGGGAE+KLRLRRPN EWDFFPYEQ+LDTMLHELCHN+YGPHNADFY L D+IRKEC
Sbjct: 61  GLNIGGGAEIKLRLRRPNCEWDFFPYEQVLDTMLHELCHNQYGPHNADFYNLLDQIRKEC 120

Query: 120 DELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRARHGALLPSGPNRIG 179
           +EL+AKGITGTG+GFDLPGR LGGFSRQPPLS +RQ+ALAAAENRAR GA+LPSGP R+G
Sbjct: 121 EELIAKGITGTGQGFDLPGRCLGGFSRQPPLSSMRQTALAAAENRARRGAVLPSGPQRVG 180

Query: 180 GDSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVREDVGSSTDASESSKTSSVS 239
           GD +IK ALSP+QAAAMAAERRLHDD+WCGSKSL    D++E+V    +AS  S  S   
Sbjct: 181 GDGNIKTALSPVQAAAMAAERRLHDDLWCGSKSLEGISDLKENV----EASSKSNISITF 236

Query: 240 NNRSGQTSSLQPSSGQKAVDVGQMWQCNMCTLLNQPLALTCEACGTQRNKSVGNLKGWSC 299
              S +TS    ++GQK VD    WQC+MCTLLNQPL L CEACG +R+KS+ N K WSC
Sbjct: 237 EGVSSRTSPRGQTTGQKPVDDHPQWQCHMCTLLNQPLVLICEACGPERSKSIANFKVWSC 296

Query: 300 KFCTLDNSSLSERCLACGEWRYSNGPPIST 329
           KFCTL+NS   ERC+ACGEWRYS GPP+ST
Sbjct: 297 KFCTLENSVELERCIACGEWRYSYGPPVST 326

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097470|ref|XP_002310948.1| predicted protein [Populus trichocarpa] gi|222850768|gb|EEE88315.1| predicted protein [Populus trichocarpa]

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 238/328 (72%), Positives = 270/328 (82%), Gaps = 4/328 (1%)

Query: 1   MDLNDLNKVWEVKALKKIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLG 60
           MDLNDLNKVWE+K LKKIGE+DAR++LE+VAKQVQPIM+K KWKV+ILSEFCPANP+LLG
Sbjct: 1   MDLNDLNKVWEIKPLKKIGEEDARKVLERVAKQVQPIMKKRKWKVKILSEFCPANPALLG 60

Query: 61  INIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECD 120
           +NIGGGAEVKLRLRRPN EWDFFPYEQ+LDTMLHELCHNEYGPHN+ FY L DEIRKE +
Sbjct: 61  LNIGGGAEVKLRLRRPNNEWDFFPYEQVLDTMLHELCHNEYGPHNSGFYNLLDEIRKESE 120

Query: 121 ELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRARHGALLPSGPNRIGG 180
           ELMAKGITGTG+GFDLPGRRLGGFSRQPPLS LRQSALAA ENRAR  ALLPSGP R+GG
Sbjct: 121 ELMAKGITGTGEGFDLPGRRLGGFSRQPPLSLLRQSALAATENRARRDALLPSGPKRVGG 180

Query: 181 DSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVREDVGSSTDASESSKTSSVSN 240
           DS+IKAALSPIQAAAMAAE+RL DD+WCGSKS +S + V  ++    +  E S TS  S 
Sbjct: 181 DSNIKAALSPIQAAAMAAEKRLQDDLWCGSKSSDSVVTVNGNI----ERPEGSSTSISSK 236

Query: 241 NRSGQTSSLQPSSGQKAVDVGQMWQCNMCTLLNQPLALTCEACGTQRNKSVGNLKGWSCK 300
             + Q S     + ++ +     WQCN CTLLNQP+AL CEACGTQR K V   K WSCK
Sbjct: 237 GIATQISPGTSMNAREPIHDHPTWQCNTCTLLNQPMALVCEACGTQRLKDVAKFKSWSCK 296

Query: 301 FCTLDNSSLSERCLACGEWRYSNGPPIS 328
           FCTL+NS   +RC+ACGEWRYS GPP +
Sbjct: 297 FCTLENSVELDRCMACGEWRYSYGPPAT 324

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461874|ref|XP_002264382.1| PREDICTED: DNA damage response protein WSS1 [Vitis vinifera] gi|296089891|emb|CBI39710.3| unnamed protein product [Vitis vinifera]

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/370 (61%), Positives = 277/370 (74%), Gaps = 38/370 (10%)

Query: 1   MDLNDLNKVWEVKALKKIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLG 60
           M+L DLNKVWEVK LKK GED+AR+ILE+VAK VQPIMRKHKW+V++LSEFCP NP+LLG
Sbjct: 1   MNLGDLNKVWEVKPLKKAGEDEARKILERVAKHVQPIMRKHKWRVKLLSEFCPNNPALLG 60

Query: 61  INIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECD 120
           +N+GGG  VKLRLRRPNR+WDFFP++QILDTMLHELCHN +GPHNADFYKLWDEIRKEC+
Sbjct: 61  LNVGGGIHVKLRLRRPNRDWDFFPFDQILDTMLHELCHNVHGPHNADFYKLWDEIRKECE 120

Query: 121 ELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRARHGALLPSGPNRIGG 180
           ELMAKGITGTG+GFDLPGRRLGGFSRQPP+S LRQ+ALAAAE RAR G+L+PSGP R+GG
Sbjct: 121 ELMAKGITGTGEGFDLPGRRLGGFSRQPPVSSLRQTALAAAEKRARLGSLVPSGPKRLGG 180

Query: 181 DSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVREDVGSSTDASE----SSKTS 236
           DSSI  ALSPIQAAAMAAERRL DD+WCGS+S     +  E   SS+D S+      +++
Sbjct: 181 DSSIMDALSPIQAAAMAAERRLQDDIWCGSQS----CEASEGGESSSDLSDRHVHREQSA 236

Query: 237 SVSNNRSGQ--------TSSLQPSSGQKAVDVGQ---------------------MWQCN 267
            +S++ SG+        +      +G   VD+ +                     MW+C 
Sbjct: 237 GMSSHGSGRGALDLDVTSRKRSHETGSSFVDLSKCASASGSVLGHNATHNTEESIMWECG 296

Query: 268 MCTLLNQPLALTCEACGTQRNKSVG-NLKGWSCKFCTLDNSSLSERCLACGEWRYSNGPP 326
           +CTLLN PLA  C+ C T++ K VG   K WSCKFCTL+N+   ++C ACG+WRYS+GPP
Sbjct: 297 ICTLLNPPLAPICKVCSTEKPKDVGIKYKVWSCKFCTLENNVELDKCGACGQWRYSHGPP 356

Query: 327 ISTPGPYPGT 336
           +ST  P  GT
Sbjct: 357 VSTRAPNLGT 366

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116656|ref|XP_002317357.1| predicted protein [Populus trichocarpa] gi|222860422|gb|EEE97969.1| predicted protein [Populus trichocarpa]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/388 (55%), Positives = 270/388 (69%), Gaps = 52/388 (13%)

Query: 1   MDLNDLNKVWEVKALKKIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLG 60
           M+L+DLNKVWE+KALKK GE++AR++L+K+AKQVQPIMRKH W+V++LSEFCP N SLLG
Sbjct: 1   MNLSDLNKVWEIKALKKPGEEEARRMLDKIAKQVQPIMRKHNWRVKLLSEFCPNNRSLLG 60

Query: 61  INIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECD 120
           +N+GGG  VKLRLRRPNR+ DFFP+ Q+LDTMLHELCHN +GPHNA+FYKLWDE+RKEC+
Sbjct: 61  LNVGGGVHVKLRLRRPNRDLDFFPFHQVLDTMLHELCHNVHGPHNANFYKLWDELRKECE 120

Query: 121 ELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRARHGALLPSGPNRIGG 180
           EL+ KGITGTG+GFDLPGRRLGGFS QP LS LR++ALAAAE RA+ G++LPS P R+GG
Sbjct: 121 ELIFKGITGTGEGFDLPGRRLGGFSCQPALSSLRKTALAAAEKRAKLGSMLPSQPKRLGG 180

Query: 181 DSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSD---------IDVREDVGSSTDASE 231
           DS+I AALSPIQAAAMAAERRL D++WCGS    +D          D+ E+  S  + +E
Sbjct: 181 DSTIMAALSPIQAAAMAAERRLQDEIWCGSLLAETDETSGDGETSSDIAENPVSMGEFTE 240

Query: 232 SSK--------------TSSV--------SNNRSGQTSSLQ--------PSSGQKAV--- 258
           SS+              T+ +        S++  G T++L         P +   +    
Sbjct: 241 SSRKKFCNSYKDPFPDTTTHIEGSFIDLTSDSIFGSTTNLDTRHVLEAPPLTSDSSFGSI 300

Query: 259 ---------DVGQMWQCNMCTLLNQPLALTCEACGTQRNKSVGNL-KGWSCKFCTLDNSS 308
                    +   +W+C  CTLLN  LA  CE CG Q+ K      K WSCKFCTL+N  
Sbjct: 301 CNRDTAHTPEASSLWECGTCTLLNPQLAPICELCGAQKPKDASTKNKIWSCKFCTLENCL 360

Query: 309 LSERCLACGEWRYSNGPPISTPGPYPGT 336
             +RCLACG+WRYSNGPP+ST  P  GT
Sbjct: 361 KLDRCLACGQWRYSNGPPVSTRAPNLGT 388

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413952857|gb|AFW85506.1| putative uncharacterized protein hypro4 [Zea mays]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/345 (57%), Positives = 250/345 (72%), Gaps = 15/345 (4%)

Query: 1   MDLNDLNKVWEVKALK-KIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLL 59
           M++ DL+KVWEV+ALK K     AR  L++VA+QVQPIMR+HKW+V++LSEF P NP LL
Sbjct: 1   MEVGDLHKVWEVRALKIKPDATAARATLDRVARQVQPIMRRHKWRVKVLSEFSPRNPRLL 60

Query: 60  GINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKEC 119
           G+N+G G EVKLRLRR  R+ DF PYE++LDTMLHELCHNE GPH+A FYKLWDE+RKEC
Sbjct: 61  GLNVGAGVEVKLRLRRAGRDHDFIPYEEVLDTMLHELCHNERGPHDAQFYKLWDELRKEC 120

Query: 120 DELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRARHGALLPSGPNRIG 179
           +EL++KGITGTG+GFD  GRR+GGF+  PP   LRQ+ LAAA+ RAR+GALLPSGP ++G
Sbjct: 121 EELVSKGITGTGQGFDGTGRRVGGFTVHPPPPSLRQATLAAAQKRARNGALLPSGPRKLG 180

Query: 180 GDSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVREDV---GSSTDASESSKTS 236
           G+S I +ALSP+QAAAMAAERR++DD+WCGS    S ID  +DV     S + +   K  
Sbjct: 181 GNSEIMSALSPVQAAAMAAERRMYDDLWCGSHD-QSAIDDSDDVIILQESPNLTRDEKDK 239

Query: 237 SVSNNRSGQTSS--------LQPSSGQKAVDVGQMWQCNMCTLLNQPLALTCEACGTQRN 288
              +N S Q S+            +   A+D  + W+C  CTLLNQPLA  CE CGT + 
Sbjct: 240 GSCSNTSAQPSTSSRIHIAARDDRTTSDALDSSK-WECGACTLLNQPLAPICEVCGTTKP 298

Query: 289 K-SVGNLKGWSCKFCTLDNSSLSERCLACGEWRYSNGPPISTPGP 332
           K +      WSCKFCTL+NS+  ++C AC +WRYS GPP++T GP
Sbjct: 299 KIAKAKYTTWSCKFCTLENSTKLDKCSACDQWRYSYGPPVATYGP 343

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847960|ref|XP_002891861.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gi|297337703|gb|EFH68120.1| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/401 (51%), Positives = 253/401 (63%), Gaps = 65/401 (16%)

Query: 1   MDLNDLNKVWEVKALKKIGE-DDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLL 59
           M+L DLNKVWE+KALKK    D+AR+ILEKVA QVQPIM + KW+V++LSEFCP NP LL
Sbjct: 1   MNLGDLNKVWEIKALKKKPRADEARKILEKVANQVQPIMTRRKWRVKLLSEFCPKNPMLL 60

Query: 60  GINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKEC 119
           G+N+  G +VKLRLRR N + +F  Y +ILDTMLHELCHN +GPHNA+FYKLWDE+RKEC
Sbjct: 61  GVNVNRGVQVKLRLRRVNHDGEFLSYHEILDTMLHELCHNAHGPHNANFYKLWDELRKEC 120

Query: 120 DELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRARHGALLPSGPNRIG 179
           +ELM+KGITGTG+GFD+PG+RLGG SRQPPLS LR +A  AAE R   G LLPSGP+R+G
Sbjct: 121 EELMSKGITGTGQGFDIPGKRLGGLSRQPPLSSLRATAATAAEKRVCAGTLLPSGPHRLG 180

Query: 180 GDSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVREDVGS------------ST 227
           GDSSI + LSPIQAAAMAAERRL DD+WCGS+S  +  D   D  +            S 
Sbjct: 181 GDSSIMSDLSPIQAAAMAAERRLLDDIWCGSQSTEALEDEESDSDTCKEPVSIRETCMSM 240

Query: 228 DASESSKTSSVSN-NRSGQTSSLQ-----------------------------------P 251
           +A    + +S+SN N    +SSLQ                                   P
Sbjct: 241 NAKSVKRCNSLSNANSCPPSSSLQGGSDVIDLTEESFEPRCAKRNCSPGDQGPSCAKDVP 300

Query: 252 SSG---------------QKAVDVGQMWQCNMCTLLNQPLALTCEAC-GTQRNKSVGNLK 295
           +SG                ++ +   MW+C  CTLLN  LA  CE C  T+  +     K
Sbjct: 301 NSGFTKSSITLPSTSYNANQSREESTMWECAECTLLNPSLAPICELCTATKPKEKEMKHK 360

Query: 296 GWSCKFCTLDNSSLSERCLACGEWRYSNGPPISTPGPYPGT 336
            WSCKFCTL+N    E+C ACG+WRYS G P+ST  P  GT
Sbjct: 361 VWSCKFCTLENEVKLEKCEACGQWRYSYGAPLSTGAPNVGT 401

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563536|ref|XP_002522770.1| conserved hypothetical protein [Ricinus communis] gi|223538008|gb|EEF39621.1| conserved hypothetical protein [Ricinus communis]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/408 (48%), Positives = 256/408 (62%), Gaps = 76/408 (18%)

Query: 1   MDLNDLNKVWEVKALKKIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLG 60
           M++ DLNKVWE+KALKK GE++A+++LEK+AKQVQPIMRKHKW+V++LSEFCP NP+LLG
Sbjct: 1   MNVGDLNKVWEIKALKKPGEEEAKRMLEKIAKQVQPIMRKHKWRVKVLSEFCPKNPALLG 60

Query: 61  INIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECD 120
           +N+GGG  VKLRLRRPNR+WDFFP++ +LDTMLHELCHN +GPHNA+FYKLWDE+RKEC+
Sbjct: 61  LNVGGGVHVKLRLRRPNRDWDFFPFDMVLDTMLHELCHNVHGPHNANFYKLWDELRKECE 120

Query: 121 ELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRARHGALLPSGPNRIGG 180
           EL++KGITG+ +GFD+PGRRLGGFS QPPLS L ++ALAAAE RA+ G+LLPSGP R+GG
Sbjct: 121 ELLSKGITGSAEGFDMPGRRLGGFSCQPPLSSLPKTALAAAEKRAKLGSLLPSGPKRLGG 180

Query: 181 DSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVREDVGSSTDASE----SSKTS 236
           D++I  ALSPIQAAAMAAERRL D++WCGS+S     +V ED  +STD +E    + +T+
Sbjct: 181 DNTIMIALSPIQAAAMAAERRLQDEIWCGSQS----AEVSEDGENSTDIAEDLVDARQTA 236

Query: 237 SVSNNRSGQTSSLQPSSGQKAVDVGQMWQCNMCTL------------------------- 271
             S   +G+  S + S+   +       + N+  L                         
Sbjct: 237 RSSRPDNGRKRSRELSNTTDSQSFNGHLESNIVDLSTDVSTSGSIRDRGTNPKKRTWNLY 296

Query: 272 ---------LNQPLALTCEACGTQRNKSVGNLKGWSCKFCTLDNSSLS------------ 310
                    +N     +  +       S   L  W C  CTL N  L+            
Sbjct: 297 KSASSDSAFINLIGGSSLGSIANHEIHSSEELAMWECAACTLLNPPLAPICNLCSTEKPK 356

Query: 311 ----------------------ERCLACGEWRYSNGPPISTPGPYPGT 336
                                 ++C AC EWRYS GPP+STP P  GT
Sbjct: 357 DASAKYKIWSCKFCTLENSVKLDKCSACSEWRYSYGPPVSTPAPNHGT 404

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218197734|gb|EEC80161.1| hypothetical protein OsI_21977 [Oryza sativa Indica Group]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/350 (56%), Positives = 251/350 (71%), Gaps = 19/350 (5%)

Query: 1   MDLNDLNKVWEVKALK-KIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLL 59
           M++ DL+KVWE++ALK K  E  AR +L++VAKQVQPIMR+ KW+V++LSEF P NP LL
Sbjct: 1   MEVGDLHKVWEIRALKRKPDEPAARALLDRVAKQVQPIMRRRKWRVKVLSEFSPKNPRLL 60

Query: 60  GINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKEC 119
           G+N+GGG EVKLRLRR  R++DF PYE++LDTMLHELCH E GPH+A FYKLWDE+RKEC
Sbjct: 61  GLNVGGGVEVKLRLRRAGRDYDFIPYEEVLDTMLHELCHIERGPHDAQFYKLWDELRKEC 120

Query: 120 DELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRARHGALLPSGPNRIG 179
           +EL+A GITG+G+GFD  GRRLGGF+  PP   LRQ+ LAAA+ RAR+GALLPSGP ++G
Sbjct: 121 EELVAMGITGSGQGFDGTGRRLGGFTVHPPPPSLRQATLAAAQKRARNGALLPSGPRKLG 180

Query: 180 GDSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVREDV-------GSSTDASES 232
           G++ I +ALSPIQAAAMAAERR++DD+WCGS    S ID  EDV          T   +S
Sbjct: 181 GNNEIMSALSPIQAAAMAAERRMYDDLWCGSHD-QSGIDDSEDVVILEDTPNLPTQLGKS 239

Query: 233 SKTSSVSNNRSGQTSSLQPSSGQK-------AVDVGQ--MWQCNMCTLLNQPLALTCEAC 283
           +K    S++ +  TS   P++ Q          D G   +W+C  CTLLNQPLA  CE C
Sbjct: 240 TKDGFSSSSENPSTSLGFPTAAQSGSSSCRITTDAGDSSLWECVACTLLNQPLAPICEVC 299

Query: 284 GTQRNKSV-GNLKGWSCKFCTLDNSSLSERCLACGEWRYSNGPPISTPGP 332
              + K+       WSCKFCTL+NS+  ++C AC +WRYS+GPP +T  P
Sbjct: 300 SAAKPKTTKAKYATWSCKFCTLENSTKIDKCSACDQWRYSHGPPAATYCP 349

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51091111|dbj|BAD35808.1| unknown protein [Oryza sativa Japonica Group] gi|215706950|dbj|BAG93410.1| unnamed protein product [Oryza sativa Japonica Group] gi|222635111|gb|EEE65243.1| hypothetical protein OsJ_20413 [Oryza sativa Japonica Group]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/350 (56%), Positives = 251/350 (71%), Gaps = 19/350 (5%)

Query: 1   MDLNDLNKVWEVKALK-KIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLL 59
           M++ DL+KVWE++ALK K  E  AR +L++VAKQVQPIMR+ KW+V++LSEF P NP LL
Sbjct: 1   MEVGDLHKVWEIRALKRKPDEPAARALLDRVAKQVQPIMRRRKWRVKVLSEFSPKNPRLL 60

Query: 60  GINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKEC 119
           G+N+GGG EVKLRLR   R++DF PYE++LDTMLHELCH   GPH+A FYKLWDE+RKEC
Sbjct: 61  GLNVGGGVEVKLRLRHAGRDYDFIPYEEVLDTMLHELCHIARGPHDAQFYKLWDELRKEC 120

Query: 120 DELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRARHGALLPSGPNRIG 179
           +EL++KGITG+G+GFD  GRRLGGF+  PP   LRQ+ LAAA+ RAR+GALLPSGP ++G
Sbjct: 121 EELVSKGITGSGQGFDGTGRRLGGFTVHPPPPSLRQATLAAAQKRARNGALLPSGPRKLG 180

Query: 180 GDSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVREDV-------GSSTDASES 232
           G++ I +ALSPIQAAAMAAERR++DD+WCGS    S ID  EDV          T   +S
Sbjct: 181 GNNDIMSALSPIQAAAMAAERRMYDDLWCGSHD-QSGIDDSEDVVILEDTPNLPTQLGKS 239

Query: 233 SKTSSVSNNRSGQTSSLQPSSGQK-------AVDVGQ--MWQCNMCTLLNQPLALTCEAC 283
           +K    S++ +  TSS  P++ Q          D G   +W+C  CTLLNQPLA  CE C
Sbjct: 240 TKDGFSSSSENPSTSSGFPTAAQNGSSSCRITTDAGDSSLWECVACTLLNQPLAPICEVC 299

Query: 284 GTQRNKSV-GNLKGWSCKFCTLDNSSLSERCLACGEWRYSNGPPISTPGP 332
              + K+       WSCKFCTL+NS+  ++C AC +WRYS+GPP +T  P
Sbjct: 300 SAAKPKTTKAKYATWSCKFCTLENSTKIDKCSACDQWRYSHGPPAATYCP 349

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297605345|ref|NP_001057027.2| Os06g0191200 [Oryza sativa Japonica Group] gi|255676805|dbj|BAF18941.2| Os06g0191200, partial [Oryza sativa Japonica Group]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/350 (56%), Positives = 251/350 (71%), Gaps = 19/350 (5%)

Query: 1   MDLNDLNKVWEVKALK-KIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLL 59
           M++ DL+KVWE++ALK K  E  AR +L++VAKQVQPIMR+ KW+V++LSEF P NP LL
Sbjct: 49  MEVGDLHKVWEIRALKRKPDEPAARALLDRVAKQVQPIMRRRKWRVKVLSEFSPKNPRLL 108

Query: 60  GINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKEC 119
           G+N+GGG EVKLRLR   R++DF PYE++LDTMLHELCH   GPH+A FYKLWDE+RKEC
Sbjct: 109 GLNVGGGVEVKLRLRHAGRDYDFIPYEEVLDTMLHELCHIARGPHDAQFYKLWDELRKEC 168

Query: 120 DELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRARHGALLPSGPNRIG 179
           +EL++KGITG+G+GFD  GRRLGGF+  PP   LRQ+ LAAA+ RAR+GALLPSGP ++G
Sbjct: 169 EELVSKGITGSGQGFDGTGRRLGGFTVHPPPPSLRQATLAAAQKRARNGALLPSGPRKLG 228

Query: 180 GDSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVREDV-------GSSTDASES 232
           G++ I +ALSPIQAAAMAAERR++DD+WCGS    S ID  EDV          T   +S
Sbjct: 229 GNNDIMSALSPIQAAAMAAERRMYDDLWCGSHD-QSGIDDSEDVVILEDTPNLPTQLGKS 287

Query: 233 SKTSSVSNNRSGQTSSLQPSSGQK-------AVDVGQ--MWQCNMCTLLNQPLALTCEAC 283
           +K    S++ +  TSS  P++ Q          D G   +W+C  CTLLNQPLA  CE C
Sbjct: 288 TKDGFSSSSENPSTSSGFPTAAQNGSSSCRITTDAGDSSLWECVACTLLNQPLAPICEVC 347

Query: 284 GTQRNKSV-GNLKGWSCKFCTLDNSSLSERCLACGEWRYSNGPPISTPGP 332
              + K+       WSCKFCTL+NS+  ++C AC +WRYS+GPP +T  P
Sbjct: 348 SAAKPKTTKAKYATWSCKFCTLENSTKIDKCSACDQWRYSHGPPAATYCP 397

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	336
TAIR|locus:505006190	404	AT1G55915 [Arabidopsis thalian	0.848	0.705	0.543	1.2e-79
UNIPROTKB|G4MYN3	483	MGG_01341 "Uncharacterized pro	0.589	0.409	0.346	2.2e-33
ASPGD|ASPL0000062736	336	AN0304 [Emericella nidulans (t	0.559	0.559	0.403	7.7e-32
SGD|S000001176	269	WSS1 "Sumoylated protein local	0.630	0.788	0.337	4e-26
CGD|CAL0004104	306	orf19.291 [Candida albicans (t	0.345	0.379	0.350	4.9e-20
UNIPROTKB|Q5AEH7	306	CaO19.291 "Putative uncharacte	0.345	0.379	0.350	4.9e-20
POMBASE|SPCC1442.07c	282	SPCC1442.07c "ubiquitin/metall	0.312	0.372	0.356	2.6e-11
POMBASE|SPAC521.02	283	SPAC521.02 "WLM domain protein	0.363	0.431	0.336	8.2e-11
TAIR|locus:2177286	603	AT5G35690 [Arabidopsis thalian	0.288	0.160	0.373	6.4e-09
UNIPROTKB|J9NVT7	1072	SOLH "Uncharacterized protein"	0.110	0.034	0.486	7.9e-05

TAIR|locus:505006190 AT1G55915 [Arabidopsis thaliana (taxid:3702)]

 Score = 800 (286.7 bits), Expect = 1.2e-79, P = 1.2e-79
 Identities = 167/307 (54%), Positives = 201/307 (65%)

Query:     2 DLNDLNKVWEVKALK-KIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLG 60
             +L DLNKVWE+KALK K  ED+AR+ILEKVA QVQPIM + KW+V++LSEFCP NP LLG
Sbjct:     5 NLEDLNKVWEIKALKRKPREDEARKILEKVANQVQPIMTRRKWRVKLLSEFCPTNPRLLG 64

Query:    61 INIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECD 120
             +N+  G +VKLRLRR N + DF  Y +ILDTMLHELCHN +GPHNA FYKLWDE+RKEC+
Sbjct:    65 VNVNRGVQVKLRLRRVNHDLDFLSYHEILDTMLHELCHNAHGPHNASFYKLWDELRKECE 124

Query:   121 ELMAKGITGTGKGFDLPGRRLGGFSRQPPXXXXXXXXXXXXENRARHGALLPSGPNRIGG 180
             ELM+KGITGTG+GFD+PG+RLGG SRQP             E R R G LLPSGP R+GG
Sbjct:   125 ELMSKGITGTGQGFDMPGKRLGGLSRQPSLSFLRATAATAAEKRVRAGTLLPSGPQRLGG 184

Query:   181 DSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNS------DIDV-REDVGXXXXXXXXX 233
             DSSI + LSPIQAAAMAAERRL DD+WCGS+S ++      D D  +E V          
Sbjct:   185 DSSIMSDLSPIQAAAMAAERRLLDDIWCGSQSTDALEDEENDSDTYKEPVSIRETCTSVN 244

Query:   234 XXXXXXXXXXGQTSSLQPSSG-QKAVDVGQMWQCNMCTLLNQPLALTCEACGTQRNKSVG 292
                           S  PSS  Q+  DV          L  +   + C    T+RN+S G
Sbjct:   245 GKSVKRCNSWSNAHSCPPSSSHQQGSDV--------IDLTEESFEIRC----TKRNRSPG 292

Query:   293 NLKGWSC 299
             + +G SC
Sbjct:   293 D-QGPSC 298

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|G4MYN3 MGG_01341 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 292 (107.8 bits), Expect = 2.2e-33, Sum P(3) = 2.2e-33
 Identities = 72/208 (34%), Positives = 111/208 (53%)

Query:    15 LKKIG-EDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRL 73
             LK +  ++DA   L+++A  V+PIMR   W+VR L+EF P   +LLG+N+    ++ +RL
Sbjct:    14 LKNLSRQEDALHTLKRLASMVKPIMRARGWRVRQLAEFYPDQQNLLGLNVNRTHKILVRL 73

Query:    74 RRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKG 133
             R P     F P+E++ DT+LHEL H  +GPH++ F+ LWD++R E + L+  G TG G  
Sbjct:    74 RYPGDVNQFLPFEEVTDTLLHELAHIVHGPHDSKFHALWDQLRDEHEGLLRSGYTGDG-- 131

Query:   134 FDLPGRRLGGFSRQPPXXXXXXXXXXXXENRARHGALLPSGPNRIGGDSSIKAALSPIQA 193
             F   G +LGG  R P               RA  G +   G  R+GG +  +   +    
Sbjct:   132 FLSVGHKLGG-RRIPMDEARRIARVAAERRRAERGDV---G-RRLGGRTP-RPGENIRDV 185

Query:   194 AAMAAERRLHDDMWCGSKSLNSDIDVRE 221
              A AA RR      CG+   + + ++R+
Sbjct:   186 IANAAGRRQASLQGCGNTK-HGEGEIRQ 212

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000062736 AN0304 [Emericella nidulans (taxid:162425)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 79/196 (40%), Positives = 109/196 (55%)

Query:    20 EDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNRE 79
             E +A  IL K+A  V+PIMR+  W+V  L EF P   +LLG+N+ GG ++ LRLR    +
Sbjct:    20 ESEALLILRKIASLVRPIMRRRSWRVGTLCEFFPQQRNLLGLNVNGGEKICLRLRHAGDQ 79

Query:    80 WDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKGFDLPGR 139
               F P +Q++DTMLHELCH  +GPHN  F+ LW+++R E  EL  KG TG  +GF   GR
Sbjct:    80 SQFLPLDQVVDTMLHELCHIVHGPHNQQFHALWNQLRDEHTELTMKGYTG--EGFLSHGR 137

Query:   140 RLGGFSRQPPXXXXXXXXXXXXENRARHGALLPSGPNRIGGDSSIKAALSPIQAAAMAAE 199
             RLGG ++ P             + R  +     SG  R+GG    + A    +  A AA+
Sbjct:   138 RLGG-AKVPIDEARRRARAAAEQRRTLYAG---SG-QRVGGTGPARGA-DMRKVIADAAQ 191

Query:   200 RRLHDDMWCGSKSLNS 215
             RR+     C S + NS
Sbjct:   192 RRIEVTQGCASGADNS 207

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010225 "response to UV-C" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA

GO:0010224 "response to UV-B" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

SGD|S000001176 WSS1 "Sumoylated protein localizing to the nuclear periphery of mother cells" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 73/216 (33%), Positives = 112/216 (51%)

Query:     9 VWEVKALK-KIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGA 67
             + +V  L+ K  ++DA  +++++A +V  +M+++ +KV  L EF P +  LLG+N+  G+
Sbjct:    29 IQKVAVLQSKPNKEDALNLIKEIAHKVSYLMKENHFKVTNLVEFYPRDQRLLGMNVNHGS 88

Query:    68 EVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGI 127
             ++ LRLR    E+ F P E I+ TMLHEL HN +GPH+  FY   DE+      +  +G+
Sbjct:    89 KIMLRLRCSTDEFQFLPMECIMGTMLHELTHNLFGPHDKKFYNKLDELIGRQWVIEQRGL 148

Query:   128 TGTGKGFDLPGRRLGGFSRQPPXXXXXXXXXXXXENRARHGALLPSGPNRIGGDSSIKAA 187
               T  G    G+RLGG +                    + G  +  G     G SSI   
Sbjct:   149 YDTFLG---NGQRLGGRANLRSNRYPMTGISTNTGIVRKRGKGVKLGSLHPEGISSIDRG 205

Query:   188 LSPIQAAAMAAERRLHDDMWCGSKSLNSDIDVREDV 223
              SP + AA AAERR  DD WCG    N D  + +++
Sbjct:   206 NSPRELAAFAAERRYRDDRWCGETKNNKDQIISDNI 241

GO:0005634 "nucleus" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA;IGI

GO:0010224 "response to UV-B" evidence=IMP

GO:0010225 "response to UV-C" evidence=IMP

GO:0006281 "DNA repair" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0016925 "protein sumoylation" evidence=IGI

GO:0005635 "nuclear envelope" evidence=IDA

CGD|CAL0004104 orf19.291 [Candida albicans (taxid:5476)]

 Score = 206 (77.6 bits), Expect = 4.9e-20, Sum P(2) = 4.9e-20
 Identities = 41/117 (35%), Positives = 68/117 (58%)

Query:    11 EVKALKKIGEDD-ARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEV 69
             ++ ALK+  ++  A+ +L   A+ V PI+ + K+KV  L E  P    L G+N+  G ++
Sbjct:    25 KIGALKRFSDEAYAKSLLYDAARLVAPIIHEQKFKVGKLYEMYPDKAELWGLNVNHGQKI 84

Query:    70 KLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKG 126
              LRLR  + +  F P   I+ T+LHEL HN Y  H++ FYK  D+++   D++  +G
Sbjct:    85 YLRLREHHNDKSFLPMGDIVGTLLHELTHNLYSAHDSKFYKFLDKLKSRYDDIHCRG 141

GO:0003674 "molecular_function" evidence=ND

GO:0005635 "nuclear envelope" evidence=IEA

GO:0010225 "response to UV-C" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA

GO:0010224 "response to UV-B" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

UNIPROTKB|Q5AEH7 CaO19.291 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 206 (77.6 bits), Expect = 4.9e-20, Sum P(2) = 4.9e-20
 Identities = 41/117 (35%), Positives = 68/117 (58%)

Query:    11 EVKALKKIGEDD-ARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEV 69
             ++ ALK+  ++  A+ +L   A+ V PI+ + K+KV  L E  P    L G+N+  G ++
Sbjct:    25 KIGALKRFSDEAYAKSLLYDAARLVAPIIHEQKFKVGKLYEMYPDKAELWGLNVNHGQKI 84

Query:    70 KLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKG 126
              LRLR  + +  F P   I+ T+LHEL HN Y  H++ FYK  D+++   D++  +G
Sbjct:    85 YLRLREHHNDKSFLPMGDIVGTLLHELTHNLYSAHDSKFYKFLDKLKSRYDDIHCRG 141

GO:0003674 "molecular_function" evidence=ND

POMBASE|SPCC1442.07c SPCC1442.07c "ubiquitin/metalloprotease fusion protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 174 (66.3 bits), Expect = 2.6e-11, P = 2.6e-11
 Identities = 41/115 (35%), Positives = 68/115 (59%)

Query:    20 EDDARQILEKVAKQ--VQPIMRKHKWKVRILSEFCPA-----NPSLLGINIGGGAEVKLR 72
             +D A + LE++     ++ IM  H+W V +LSE  PA     +   LG+N   GA ++LR
Sbjct:   122 KDRALRYLERLRDDTGIKKIMDSHRWTVPLLSEMDPAEHTRHDSKTLGLNHNQGAHIELR 181

Query:    73 LRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECD--ELMAK 125
             LR  +R   F  Y+ +  T++HEL HN +G H++ F++L+ ++ KE D  +L+ K
Sbjct:   182 LRT-DRYDGFRDYKTVKSTLIHELTHNVHGEHDSSFWELFRQLTKEADAADLLGK 235

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006974 "response to DNA damage stimulus" evidence=ISS

GO:0008237 "metallopeptidase activity" evidence=ISM

GO:0008270 "zinc ion binding" evidence=ISM

GO:0016925 "protein sumoylation" evidence=ISS

POMBASE|SPAC521.02 SPAC521.02 "WLM domain protein" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 170 (64.9 bits), Expect = 8.2e-11, P = 8.2e-11
 Identities = 42/125 (33%), Positives = 61/125 (48%)

Query:     8 KVWEVKALKKIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGA 67
             K+  + A+K    D +   L+++A    PIM++H + V  L E    N    G N   G 
Sbjct:    34 KIGFISAIKGDFHDLSSDYLKRIAAMAFPIMKEHGFGVTSLDEVA-YNAKFWGRNWNKGE 92

Query:    68 EVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGI 127
              ++L LR  +  W   P+E ++D  LHELCH   GPH+  F+     +R     L AKG 
Sbjct:    93 CIELVLRDASNRW--LPFEFVMDVFLHELCHIWQGPHDRRFFSHLSTLRAALIALYAKGY 150

Query:   128 TGTGK 132
              G GK
Sbjct:   151 KGPGK 155

GO:0005634 "nucleus" evidence=IDA

GO:0006281 "DNA repair" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0008270 "zinc ion binding" evidence=ISM

GO:0016925 "protein sumoylation" evidence=ISO

TAIR|locus:2177286 AT5G35690 [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 6.4e-09, P = 6.4e-09
 Identities = 40/107 (37%), Positives = 57/107 (53%)

Query:    37 IMRKHKWKVRILSEFCPA-----NPS-LLGINIGGGAEVKLRLRRPNREWDFFPYEQILD 90
             +M KH+W+V I++E  P      +P  LLG N   G E+ LRLR  + +  F  Y+ I  
Sbjct:   180 VMNKHRWRVGIMTELAPVGYVGVSPRCLLGFNKNQGEEISLRLRTDDLK-GFRKYQSIKK 238

Query:    91 TMLHELCHNEYGPHNADFYKLWDEIRKECDEL---MAKGITGTGKGF 134
             T+LHEL H  Y  H+  FY L  ++ KE + L    ++G T  G  F
Sbjct:   239 TLLHELAHMVYTEHDEKFYALDSQLNKEAESLDWTKSRGHTLNGTKF 285

GO:0005634 "nucleus" evidence=ISM

UNIPROTKB|J9NVT7 SOLH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 100 (40.3 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
 Identities = 18/37 (48%), Positives = 22/37 (59%)

Query:   255 QKAVDVGQMWQCNMCTLLNQPLALTCEACGTQRNKSV 291
             Q+A D G  W C  CTL N P+A +C ACG  R  S+
Sbjct:   131 QRAADPGSGWACQRCTLHNTPVASSCSACGGPRKLSL 167

GO:0006508 "proteolysis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0004198 "calcium-dependent cysteine-type endopeptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00080073 hypothetical protein (331 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	336
pfam08325	183	pfam08325, WLM, WLM domain	4e-74

>gnl|CDD|219796 pfam08325, WLM, WLM domain

 Score =  226 bits (578), Expect = 4e-74
 Identities = 85/197 (43%), Positives = 115/197 (58%), Gaps = 16/197 (8%)

Query: 7   NKVWEVKALK-KIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGG 65
            KV  +KALK K     A  +L+++A  V+PIM++H+W+V +L+EF P N  LLG+N+  
Sbjct: 1   PKVHNIKALKRKPDHSRALDLLKRLADDVRPIMKEHRWRVGLLTEFYPRNARLLGLNVNK 60

Query: 66  GAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAK 125
           G  ++LRLR P+ +  F P+E I+ T+LHEL HN +GPH+  FY L DE+RKE +EL A+
Sbjct: 61  GEVIELRLRTPSDDGGFLPFESIMGTLLHELAHNVHGPHDRKFYALLDELRKEVEELDAR 120

Query: 126 GITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRARHGALLPSGPNRIGGDSSIK 185
           G      GF   GRRLGG                  E R   G  L  G  R+GGDS  +
Sbjct: 121 GYD----GFLSSGRRLGGRGSYNSA-----------EGRELGGNGLSGGGERLGGDSLSR 165

Query: 186 AALSPIQAAAMAAERRL 202
           +  S  + AA AAERRL
Sbjct: 166 SGESARELAAAAAERRL 182

This is a predicted metallopeptidase domain called WLM (Wss1p-like metalloproteases). These are linked to the Ub-system by virtue of fusions with the UB-binding PUG (PUB), Ub-like, and Little Finger domains. More specifically, genetic evidence implicates the WLM family in de-SUMOylation. Length = 183

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	336
PF08325	186	WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1	100.0
KOG4842	278	consensus Protein involved in sister chromatid sep	99.89
KOG4842	278	consensus Protein involved in sister chromatid sep	99.53
PF01863	205	DUF45: Protein of unknown function DUF45; InterPro	99.5
COG1451	223	Predicted metal-dependent hydrolase [General funct	99.25
PF00641	30	zf-RanBP: Zn-finger in Ran binding protein and oth	98.32
PF00641	30	zf-RanBP: Zn-finger in Ran binding protein and oth	98.31
KOG4198	280	consensus RNA-binding Ran Zn-finger protein and re	98.04
smart00731	146	SprT SprT homologues. Predicted to have roles in t	97.89
smart00547	26	ZnF_RBZ Zinc finger domain. Zinc finger domain in	97.63
smart00547	26	ZnF_RBZ Zinc finger domain. Zinc finger domain in	97.63
PF10263	157	SprT-like: SprT-like family; InterPro: IPR006640 T	97.42
PF12773	50	DZR: Double zinc ribbon	96.98
KOG4198	280	consensus RNA-binding Ran Zn-finger protein and re	96.45
KOG4477	228	consensus RING1 interactor RYBP and related Zn-fin	96.24
KOG4477	228	consensus RING1 interactor RYBP and related Zn-fin	96.06
PRK14559	645	putative protein serine/threonine phosphatase; Pro	95.9
PRK04351	149	hypothetical protein; Provisional	95.5
KOG4345	774	consensus NF-kappa B regulator AP20/Cezanne [Signa	94.03
PRK04860	160	hypothetical protein; Provisional	93.56
KOG4345	774	consensus NF-kappa B regulator AP20/Cezanne [Signa	93.36
COG3091	156	SprT Zn-dependent metalloprotease, SprT family [Ge	93.27
PRK03982	288	heat shock protein HtpX; Provisional	90.53
PF04450	205	BSP: Peptidase of plants and bacteria; InterPro: I	89.87
PF08325	186	WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1	89.31
PRK03001	283	M48 family peptidase; Provisional	88.78
PF13248	26	zf-ribbon_3: zinc-ribbon domain	88.61
PRK04897	298	heat shock protein HtpX; Provisional	88.42
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	87.83
COG0501	302	HtpX Zn-dependent protease with chaperone function	87.42
PRK01265	324	heat shock protein HtpX; Provisional	86.73
PF06114	122	DUF955: Domain of unknown function (DUF955); Inter	86.55
KOG3931	484	consensus Uncharacterized conserved protein [Funct	86.54
PF13248	26	zf-ribbon_3: zinc-ribbon domain	86.18
PRK03072	288	heat shock protein HtpX; Provisional	85.97
PRK02870	336	heat shock protein HtpX; Provisional	85.13
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	84.66
PF13485	128	Peptidase_MA_2: Peptidase MA superfamily	83.64
PF05569	299	Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR0	82.85
PRK01345	317	heat shock protein HtpX; Provisional	82.13
PRK05457	284	heat shock protein HtpX; Provisional	81.88
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	81.61
PF10026	195	DUF2268: Predicted Zn-dependent protease (DUF2268)	81.33
PRK14714	1337	DNA polymerase II large subunit; Provisional	81.24
PRK02391	296	heat shock protein HtpX; Provisional	80.52
COG5100	571	NPL4 Nuclear pore protein [Nuclear structure]	80.5
cd04270	244	ZnMc_TACE_like Zinc-dependent metalloprotease; TAC	80.19

>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase

Probab=100.00  E-value=5.5e-54  Score=388.10  Aligned_cols=180  Identities=53%  Similarity=0.836  Sum_probs=162.7

Q ss_pred             ceEEEecCC-CCCHHHHHHHHHHHHHHHHHHHhhcCceeeeecccCCCCCCceeeecCCCcEEEEEecCCCCCCCCCCHH
Q 019774            8 KVWEVKALK-KIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYE   86 (336)
Q Consensus         8 ~v~~i~~L~-~p~~~~A~~~L~rlA~~v~pIM~~~~w~V~~L~Ef~P~~~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~   86 (336)
                      +|++|++|+ +|++++|++||+|||++|+|||++|+|+|++|+||||.+.++||+|+|+|++|.||||++++ ..|+||+
T Consensus         2 ~v~~I~~L~~~p~~~~A~~lL~rlA~~v~pIM~~~~~~V~~L~E~~P~~~~llG~N~N~G~~I~lrLR~~~~-~~fl~~~   80 (186)
T PF08325_consen    2 HVHFIKVLPNLPDEEEALELLERLAADVKPIMRKHGWRVGSLEEFYPNGERLLGLNVNKGEKICLRLRTPDD-GGFLPYE   80 (186)
T ss_pred             ceeEEeeCCCCcCHHHHHHHHHHHHHHHHHHHHHcCcccCeeeccCCCCCCCcceecCCCcEEEEEeCCCCC-CCEeeHH
Confidence            699999999 99999999999999999999999999999999999999999999999999999999999988 8999999


Q ss_pred             HHHHHHHhhhhhcCcCCCchhHHHHHHHHHHHHHHHHHccccCCCCcccCCCcccCCCCCCCCchHHHHHHHHHHHHhhh
Q 019774           87 QILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRAR  166 (336)
Q Consensus        87 ~i~~vllHELaH~~~~~H~~~F~~ll~~l~~e~~~l~~~G~~g~g~gf~~~G~rLGG~~~~~~~~~~r~~a~~aaekr~~  166 (336)
                      .|++|||||||||+|++||.+||++|++|..|++.|+++||+   +||++.|++|||.....+            +.+..
T Consensus        81 ~i~~t~lHELaH~~~~~H~~~F~~l~~~l~~e~~~l~~~G~~---~gf~~~G~~l~~~~~~~~------------~~~~~  145 (186)
T PF08325_consen   81 TILGTMLHELAHNVHGPHDDKFWKLLDELRKECEELDAKGYT---EGFWSSGRRLGGSSGQPS------------EEREL  145 (186)
T ss_pred             HHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHhcCCc---cccCCCCcccCCCCcccc------------hhhhh
Confidence            999999999999999999999999999999999999999999   899999999999754433            01111


Q ss_pred             hCCcCCCCCccccCCCCc----CCCCCHHHHHHHHHHHHhh
Q 019774          167 HGALLPSGPNRIGGDSSI----KAALSPIQAAAMAAERRLH  203 (336)
Q Consensus       167 ~~~~~~~g~~~LGg~~~~----~~~~~~re~~a~AAerR~~  203 (336)
                      ....+.+++++|||++..    .+..++||++|+|||||++
T Consensus       146 ~~~~~~~~~~~LgG~s~~~~~~~~~~~~Re~~a~AAerR~~  186 (186)
T PF08325_consen  146 RGNGLSGGGQRLGGGSSSRPRKAQPKSPREAAAAAAERRLR  186 (186)
T ss_pred             hccccCCCCeeCCCCCCCCCCcCCCcCHHHHHHHHHHhhcC
Confidence            123356778999998752    5688999999999999985

Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.

>KOG4842 consensus Protein involved in sister chromatid separation and/or segregation [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=1.4e-23  Score=195.75  Aligned_cols=194  Identities=29%  Similarity=0.359  Sum_probs=151.8

Q ss_pred             cceEEEecCC-CCCHHHHHHHHHHHHHHHHHHHhhcCceeeeecccCCCCCCceeeecCCCcEEEEEecCCCCCCCCCCH
Q 019774            7 NKVWEVKALK-KIGEDDARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPY   85 (336)
Q Consensus         7 ~~v~~i~~L~-~p~~~~A~~~L~rlA~~v~pIM~~~~w~V~~L~Ef~P~~~~llG~N~N~G~~I~LRLR~~~~~~~f~p~   85 (336)
                      +++.+|..+. .|..+.+..+|+++|+.+.|||++|+|.|..+.++++.|..+||+|||+|.+|.|+||...+..+|+|+
T Consensus        30 ~~l~K~~~vss~~~kll~~~llk~iahl~~p~mkEh~f~vti~~Dk~irnq~~sg~nvn~gski~lslr~~~~e~~~lp~  109 (278)
T KOG4842|consen   30 PHLQKVAVVSSKPNKLLALNLLKEIAHLVSPLMKEHHFKVTILVDKYIRNQRLSGMNVNHGSKIMLSLRCSTDEFQFLPM  109 (278)
T ss_pred             cccceeeeeccchHHHHhhhhhhhhhhhhhhhhccccceeEEeehhHHHhhhhhccccCCcceEEEEeeccccccccccc
Confidence            4556666666 779999999999999999999999999999999999999999999999999999999966677789999


Q ss_pred             HHHHHHHHhhhhhcCcCCCchhHHHHHHHHHHHHHHHHHccccCCCCcccCCCcccCCCCCCCCchHHHHHHHHHHHHhh
Q 019774           86 EQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKGITGTGKGFDLPGRRLGGFSRQPPLSQLRQSALAAAENRA  165 (336)
Q Consensus        86 ~~i~~vllHELaH~~~~~H~~~F~~ll~~l~~e~~~l~~~G~~g~g~gf~~~G~rLGG~~~~~~~~~~r~~a~~aaekr~  165 (336)
                      +.++.|++|||+|+..+||+++||..|+.|+.+...+..+|+.   .=|.+-+..|||...-.- .  +         +.
T Consensus       110 e~pmgtylhel~h~lqgPhd~rfl~~L~~Lrad~gii~~mg~h---rW~vg~l~el~g~~nt~v-~--~---------~~  174 (278)
T KOG4842|consen  110 ECPMGTYLHELTHNLQGPHDKRFLNKLDELRADQGIIEQMGLH---RWFVGNLQELGGRANTRV-N--R---------YP  174 (278)
T ss_pred             cccchhhhhhhhhhhcCCChHHHHHHHHHHhhchhHHHHhccc---ceechhhhhcccccceee-c--C---------cc
Confidence            9999999999999999999999999999999999999999987   346667888887532100 0  0         00


Q ss_pred             hhCCcCCCCCccccC-------------CCCcCCCCCHHHHHHHHHHHHhhhccccCCCCCCC
Q 019774          166 RHGALLPSGPNRIGG-------------DSSIKAALSPIQAAAMAAERRLHDDMWCGSKSLNS  215 (336)
Q Consensus       166 ~~~~~~~~g~~~LGg-------------~~~~~~~~~~re~~a~AAerR~~d~~~C~~~~~~~  215 (336)
                      ..|.-...|-..|++             -+++...-.+|+++++++|++.+.+.||+-....+
T Consensus       175 tLg~stnqG~i~lrlrtdrkkgfR~y~tissTl~heLtr~v~~ehde~fyrLdrql~kek~~a  237 (278)
T KOG4842|consen  175 TLGISTNQGVIVLRLRTDRKKGFRHYETISSTLRHELTREVAAEHDERFYRLDRQLGKEKNNA  237 (278)
T ss_pred             ceeeccccceEEEecccchhcccccCCCchHHHHhhhhhhHhhhhhhHHHHHHHHhCcccchh
Confidence            000000011111111             12223344578999999999999999998765444

>KOG4842 consensus Protein involved in sister chromatid separation and/or segregation [Cell cycle control, cell division, chromosome partitioning]

Probab=99.53  E-value=6.4e-15  Score=137.98  Aligned_cols=117  Identities=26%  Similarity=0.315  Sum_probs=105.2

Q ss_pred             ceEEEecCCCCCHHHHHHHHHHHHHH--HHHHHhhcCceeeeecccCCC------CCCceeeecCCCcEEEEEecCCCCC
Q 019774            8 KVWEVKALKKIGEDDARQILEKVAKQ--VQPIMRKHKWKVRILSEFCPA------NPSLLGINIGGGAEVKLRLRRPNRE   79 (336)
Q Consensus         8 ~v~~i~~L~~p~~~~A~~~L~rlA~~--v~pIM~~~~w~V~~L~Ef~P~------~~~llG~N~N~G~~I~LRLR~~~~~   79 (336)
                      -+.....|+.|.+..|+..|++|++.  |..+|-.|.|.|+.|.|+-|.      +..+||+|.|.| +|.+|||++ +.
T Consensus       117 lhel~h~lqgPhd~rfl~~L~~Lrad~gii~~mg~hrW~vg~l~el~g~~nt~v~~~~tLg~stnqG-~i~lrlrtd-rk  194 (278)
T KOG4842|consen  117 LHELTHNLQGPHDKRFLNKLDELRADQGIIEQMGLHRWFVGNLQELGGRANTRVNRYPTLGISTNQG-VIVLRLRTD-RK  194 (278)
T ss_pred             hhhhhhhhcCCChHHHHHHHHHHhhchhHHHHhcccceechhhhhcccccceeecCccceeeccccc-eEEEecccc-hh
Confidence            33444567789999999999999984  999999999999999999995      357899999999 999999997 45


Q ss_pred             CCCCCHHHHHHHHHhhhhhcCcCCCchhHHHHHHHHHHHHHHHHHcc
Q 019774           80 WDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMAKG  126 (336)
Q Consensus        80 ~~f~p~~~i~~vllHELaH~~~~~H~~~F~~ll~~l~~e~~~l~~~G  126 (336)
                      ..|+.|+.|-.|+.|||+|+++..|+..||++-.++-+|-..+++-+
T Consensus       195 kgfR~y~tissTl~heLtr~v~~ehde~fyrLdrql~kek~~ad~~~  241 (278)
T KOG4842|consen  195 KGFRHYETISSTLRHELTREVAAEHDERFYRLDRQLGKEKNNADQII  241 (278)
T ss_pred             cccccCCCchHHHHhhhhhhHhhhhhhHHHHHHHHhCcccchhhhhc
Confidence            68999999999999999999999999999999999999998888754

>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori

Probab=99.50  E-value=4.6e-14  Score=127.19  Aligned_cols=64  Identities=25%  Similarity=0.306  Sum_probs=59.1

Q ss_pred             CCCceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCCCchhHHHHHHHHHHHHHHHHH
Q 019774           55 NPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMA  124 (336)
Q Consensus        55 ~~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~H~~~F~~ll~~l~~e~~~l~~  124 (336)
                      .++.||.| +....|.|++|.     .++|.+.|+||++|||||++|+||+++||+++.+++|+|++...
T Consensus       137 ~ksrWGsc-~~~~~I~ln~~L-----~~~P~~~idYVvvHEL~Hl~~~nHs~~Fw~~v~~~~Pd~k~~~~  200 (205)
T PF01863_consen  137 MKSRWGSC-SSKGNITLNWRL-----VMAPPEVIDYVVVHELCHLRHPNHSKRFWALVEKYMPDYKERRK  200 (205)
T ss_pred             hhhccccC-CCCCcEEeeccc-----ccCCccHHHHHHHHHHHHhccCCCCHHHHHHHHHHCcCHHHHHH
Confidence            47889999 666699999999     58999999999999999999999999999999999999998763

The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.

>COG1451 Predicted metal-dependent hydrolase [General function prediction only]

Probab=99.25  E-value=1.4e-11  Score=114.91  Aligned_cols=65  Identities=22%  Similarity=0.280  Sum_probs=60.3

Q ss_pred             CCCCceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCCCchhHHHHHHHHHHHHHHHHH
Q 019774           54 ANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMA  124 (336)
Q Consensus        54 ~~~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~H~~~F~~ll~~l~~e~~~l~~  124 (336)
                      ..++.||.+.-+| .|.|+++..     .+|.+.|.||++|||||+.++||+++||+++..++++|+++..
T Consensus       147 ~~k~~WGScs~~~-~i~~~~~l~-----~~p~~~i~YVvvHELaHLke~nHs~~Fw~lv~~~~P~~~~~~~  211 (223)
T COG1451         147 NMKRRWGSCSKAG-EIRFNWRLV-----MAPEEVIDYVVVHELAHLKEKNHSKRFWRLVEKYMPDYRAAKR  211 (223)
T ss_pred             eccceeeeecCCC-cEEeehhhh-----cCCHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHCCChHHHHH
Confidence            3688999999888 999999994     7899999999999999999999999999999999999998864

>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.32  E-value=1.9e-07  Score=60.64  Aligned_cols=27  Identities=37%  Similarity=0.903  Sum_probs=13.2

Q ss_pred             CCccCCcccccccccCccccccCCCCc
Q 019774          262 QMWQCNMCTLLNQPLALTCEACGTQRN  288 (336)
Q Consensus       262 ~~W~C~~CT~~N~~~a~~C~aC~~~rp  288 (336)
                      +.|.|+.||+.|++.+..|.+|+++||
T Consensus         3 g~W~C~~C~~~N~~~~~~C~~C~~~rp   29 (30)
T PF00641_consen    3 GDWKCPSCTFMNPASRSKCVACGAPRP   29 (30)
T ss_dssp             SSEEETTTTEEEESSSSB-TTT--BTT
T ss_pred             cCccCCCCcCCchHHhhhhhCcCCCCc
Confidence            355555555555555555555555554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....

>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.31  E-value=2.3e-07  Score=60.25  Aligned_cols=30  Identities=33%  Similarity=0.768  Sum_probs=24.2

Q ss_pred             CCCCcccCCcccccCCcCccccccCCCCCC
Q 019774          293 NLKGWSCKFCTLDNSSLSERCLACGEWRYS  322 (336)
Q Consensus       293 ~~~~W~C~~CT~~N~~~~~~C~~Cg~~R~~  322 (336)
                      +.+.|.|+.|++.|+.....|.+|+++|++
T Consensus         1 k~g~W~C~~C~~~N~~~~~~C~~C~~~rp~   30 (30)
T PF00641_consen    1 KEGDWKCPSCTFMNPASRSKCVACGAPRPG   30 (30)
T ss_dssp             -SSSEEETTTTEEEESSSSB-TTT--BTTB
T ss_pred             CCcCccCCCCcCCchHHhhhhhCcCCCCcC
Confidence            357899999999999999999999999974

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....

>KOG4198 consensus RNA-binding Ran Zn-finger protein and related proteins [General function prediction only]

Probab=98.04  E-value=3.7e-06  Score=80.84  Aligned_cols=68  Identities=24%  Similarity=0.546  Sum_probs=57.9

Q ss_pred             CCCCCCCccCCcccccccccCccccccCCCCcCCC------------------------------------C-------C
Q 019774          257 AVDVGQMWQCNMCTLLNQPLALTCEACGTQRNKSV------------------------------------G-------N  293 (336)
Q Consensus       257 ~~~~~~~W~C~~CT~~N~~~a~~C~aC~~~rp~~~------------------------------------~-------~  293 (336)
                      +....+.|.|+.|++.|....+.|..|+.+.+...                                    .       +
T Consensus        58 ~~~~pgdw~c~~c~~~n~arr~~c~~c~~s~~~~~~~~~~~~~g~~~~~~~~r~~~~~~~~~~~~g~~~~~n~~~~r~~~  137 (280)
T KOG4198|consen   58 DPPRPGDWNCPLCGFHNSARRLLCFRCGFSKVPLDSALTAPNSGSRSLQTGPRYFKGDWLCPRCPGLGFSRNNKPKRPWR  137 (280)
T ss_pred             CCCCCcccccCccchhhHHHhhhcceecccCCCccccccCCCCcccccccccccccCCCCCCCCCCCcccccccccCCcc
Confidence            44556789999999999999999999987764211                                    1       5


Q ss_pred             CCCcccCCcccccCCcCccccccCCCCCCCC
Q 019774          294 LKGWSCKFCTLDNSSLSERCLACGEWRYSNG  324 (336)
Q Consensus       294 ~~~W~C~~CT~~N~~~~~~C~~Cg~~R~~s~  324 (336)
                      ++.|.|+.|+|+|......|--|+.+|+-..
T Consensus       138 ~GDW~Cp~C~fhNfarn~~C~rC~~~r~~~a  168 (280)
T KOG4198|consen  138 SGDWECPGCNFHNFARNSECFRCGAKRPLAA  168 (280)
T ss_pred             ccCcccCCCCceeccccchhhhcCCcCcccc
Confidence            6899999999999999999999999998755

>smart00731 SprT SprT homologues

Probab=97.89  E-value=4.8e-06  Score=72.56  Aligned_cols=59  Identities=20%  Similarity=0.281  Sum_probs=48.0

Q ss_pred             CCceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcC------CCchhHHHHHHHHHHH
Q 019774           56 PSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYG------PHNADFYKLWDEIRKE  118 (336)
Q Consensus        56 ~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~------~H~~~F~~ll~~l~~e  118 (336)
                      +..+|.+..+...|.|+.+..    .-.|.+.|++||+|||||....      +|+++|++++.++...
T Consensus        31 ~~~~G~~~~~~~~I~ln~~l~----~~~~~~~l~~~l~HEm~H~~~~~~g~~~~Hg~~f~~~~~~~~~~   95 (146)
T smart00731       31 RKTGGRCLLKSAEIRLNPKLL----TENGRDRLRETLLHELCHAALYLFGRGYGHGDEWKRWMRQVNGL   95 (146)
T ss_pred             hhhhHHhhcCCCEEEeCHHHH----hhccHHHHHhhHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHcCC
Confidence            455788776567899887763    2357899999999999999988      9999999999888544

Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.

>smart00547 ZnF_RBZ Zinc finger domain

Probab=97.63  E-value=2.4e-05  Score=48.91  Aligned_cols=24  Identities=42%  Similarity=0.945  Sum_probs=12.9

Q ss_pred             CccCCcccccccccCccccccCCC
Q 019774          263 MWQCNMCTLLNQPLALTCEACGTQ  286 (336)
Q Consensus       263 ~W~C~~CT~~N~~~a~~C~aC~~~  286 (336)
                      .|.|+.|++.|...+..|.+|+++
T Consensus         2 ~W~C~~C~~~N~~~~~~C~~C~~p   25 (26)
T smart00547        2 DWECPACTFLNFASRSKCFACGAP   25 (26)
T ss_pred             cccCCCCCCcChhhhccccccCCc
Confidence            355555555555555555555543

Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.

>smart00547 ZnF_RBZ Zinc finger domain

Probab=97.63  E-value=2.6e-05  Score=48.79  Aligned_cols=25  Identities=36%  Similarity=0.876  Sum_probs=23.6

Q ss_pred             CCcccCCcccccCCcCccccccCCC
Q 019774          295 KGWSCKFCTLDNSSLSERCLACGEW  319 (336)
Q Consensus       295 ~~W~C~~CT~~N~~~~~~C~~Cg~~  319 (336)
                      +.|.|+.|++.|......|.+|+++
T Consensus         1 g~W~C~~C~~~N~~~~~~C~~C~~p   25 (26)
T smart00547        1 GDWECPACTFLNFASRSKCFACGAP   25 (26)
T ss_pred             CcccCCCCCCcChhhhccccccCCc
Confidence            4799999999999999999999986

Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.

>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT)

Probab=97.42  E-value=0.00024  Score=61.62  Aligned_cols=64  Identities=23%  Similarity=0.287  Sum_probs=48.1

Q ss_pred             ccCCCCCCceeeecCCCc---EEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCc--------CCCchhHHHHHHHHHH
Q 019774           50 EFCPANPSLLGINIGGGA---EVKLRLRRPNREWDFFPYEQILDTMLHELCHNEY--------GPHNADFYKLWDEIRK  117 (336)
Q Consensus        50 Ef~P~~~~llG~N~N~G~---~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~--------~~H~~~F~~ll~~l~~  117 (336)
                      +|-....+-+|...-.+.   .|.|+...-    ...+.+.|.+||+|||||...        .+|++.|.++..++..
T Consensus        23 ~~~~~~~~~~G~~~~~~~~~~~I~ls~~~~----~~~~~~~~~~tL~HEm~H~~~~~~~~~~~~~Hg~~fk~~~~~ig~   97 (157)
T PF10263_consen   23 TWSKRMKRTAGRCRYKRRSPCEIRLSPKLL----DRNPEEELIDTLLHEMAHAAAYVFGGGRRRGHGKEFKQWARRIGA   97 (157)
T ss_pred             EEECCCCCceEEEEECCCCceEEEECHHHH----HhhHHHHHHHHHHHHHHHHHhhhccCCCCCCCCHHHHHHHHHHCC
Confidence            343456778898655555   677776653    236789999999999999876        7999999988877744

SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.

>PF12773 DZR: Double zinc ribbon

Probab=96.98  E-value=0.00077  Score=48.16  Aligned_cols=50  Identities=28%  Similarity=0.535  Sum_probs=44.3

Q ss_pred             CCcccccccccCccccccCCCCcCCCCCCCCcccCCcccccCCcCccccccC
Q 019774          266 CNMCTLLNQPLALTCEACGTQRNKSVGNLKGWSCKFCTLDNSSLSERCLACG  317 (336)
Q Consensus       266 C~~CT~~N~~~a~~C~aC~~~rp~~~~~~~~W~C~~CT~~N~~~~~~C~~Cg  317 (336)
                      |+.|...|+..+..|..|+++-+.  .....+.|+.|...|...+..|..||
T Consensus         1 Cp~Cg~~~~~~~~fC~~CG~~l~~--~~~~~~~C~~Cg~~~~~~~~fC~~CG   50 (50)
T PF12773_consen    1 CPHCGTPNPDDAKFCPHCGTPLPP--PDQSKKICPNCGAENPPNAKFCPNCG   50 (50)
T ss_pred             CCCcCCcCCccccCChhhcCChhh--ccCCCCCCcCCcCCCcCCcCccCccc
Confidence            899999999999999999988661  23457999999999999999999997

>KOG4198 consensus RNA-binding Ran Zn-finger protein and related proteins [General function prediction only]

Probab=96.45  E-value=0.0023  Score=61.84  Aligned_cols=65  Identities=22%  Similarity=0.375  Sum_probs=54.8

Q ss_pred             CCCCCCccCCcccccccccCccccccCCCCcCCC--------CCCCCcccCCcccccCCcCccccccCCCCCC
Q 019774          258 VDVGQMWQCNMCTLLNQPLALTCEACGTQRNKSV--------GNLKGWSCKFCTLDNSSLSERCLACGEWRYS  322 (336)
Q Consensus       258 ~~~~~~W~C~~CT~~N~~~a~~C~aC~~~rp~~~--------~~~~~W~C~~CT~~N~~~~~~C~~Cg~~R~~  322 (336)
                      ....+.|.|+.|+|+|......|-.|+.+|+...        +....|.+..+...+......|..|..--+.
T Consensus       135 ~~~~GDW~Cp~C~fhNfarn~~C~rC~~~r~~~a~~~~~~s~~~~~~~~s~~~~~~~~t~~~~~~r~~~~~~~  207 (280)
T KOG4198|consen  135 PWRSGDWECPGCNFHNFARNSECFRCGAKRPLAALLGNQASEATEHDWLSKVADSSSSTRFESLLRCNARGEM  207 (280)
T ss_pred             CccccCcccCCCCceeccccchhhhcCCcCcccccccccccccccccccccccccccceecccchhhcccCcc
Confidence            4677899999999999999999999999998743        5678899999998888777788777764443

>KOG4477 consensus RING1 interactor RYBP and related Zn-finger-containing proteins [Transcription]

Probab=96.24  E-value=0.0023  Score=58.35  Aligned_cols=35  Identities=31%  Similarity=0.714  Sum_probs=29.4

Q ss_pred             CCCCCCCCccCCcccccccccCccccccCCCCcCC
Q 019774          256 KAVDVGQMWQCNMCTLLNQPLALTCEACGTQRNKS  290 (336)
Q Consensus       256 ~~~~~~~~W~C~~CT~~N~~~a~~C~aC~~~rp~~  290 (336)
                      .+..+.+.|.|..|||.|...+..|.+|+..+..+
T Consensus        17 kp~~Deg~WdCsvCTFrNsAeAfkC~vCdvRKGTS   51 (228)
T KOG4477|consen   17 KPNDDEGKWDCSVCTFRNSAEAFKCFVCDVRKGTS   51 (228)
T ss_pred             CCccccCceeeeeeeecchhhhhheeeeccccccc
Confidence            34456689999999999999999999999876554

>KOG4477 consensus RING1 interactor RYBP and related Zn-finger-containing proteins [Transcription]

Probab=96.06  E-value=0.002  Score=58.78  Aligned_cols=30  Identities=27%  Similarity=0.727  Sum_probs=26.9

Q ss_pred             CCCCcccCCcccccCCcCccccccCCCCCC
Q 019774          293 NLKGWSCKFCTLDNSSLSERCLACGEWRYS  322 (336)
Q Consensus       293 ~~~~W~C~~CT~~N~~~~~~C~~Cg~~R~~  322 (336)
                      ..+.|.|++|||.|...+.+|.+|+..+--
T Consensus        21 Deg~WdCsvCTFrNsAeAfkC~vCdvRKGT   50 (228)
T KOG4477|consen   21 DEGKWDCSVCTFRNSAEAFKCFVCDVRKGT   50 (228)
T ss_pred             ccCceeeeeeeecchhhhhheeeecccccc
Confidence            467899999999999999999999987753

>PRK14559 putative protein serine/threonine phosphatase; Provisional

Probab=95.90  E-value=0.0064  Score=65.08  Aligned_cols=50  Identities=24%  Similarity=0.504  Sum_probs=44.3

Q ss_pred             cCCcccccccccCccccccCCCCcCCCCCCCCcccCCcccccCCcCccccccCCCCC
Q 019774          265 QCNMCTLLNQPLALTCEACGTQRNKSVGNLKGWSCKFCTLDNSSLSERCLACGEWRY  321 (336)
Q Consensus       265 ~C~~CT~~N~~~a~~C~aC~~~rp~~~~~~~~W~C~~CT~~N~~~~~~C~~Cg~~R~  321 (336)
                      .|+.|...|+..+..|..||++-..       -.|+.|...|......|..||+.-.
T Consensus         3 ~Cp~Cg~~n~~~akFC~~CG~~l~~-------~~Cp~CG~~~~~~~~fC~~CG~~~~   52 (645)
T PRK14559          3 ICPQCQFENPNNNRFCQKCGTSLTH-------KPCPQCGTEVPVDEAHCPNCGAETG   52 (645)
T ss_pred             cCCCCCCcCCCCCccccccCCCCCC-------CcCCCCCCCCCcccccccccCCccc
Confidence            6999999999999999999977421       3699999999999999999999643

>PRK04351 hypothetical protein; Provisional

Probab=95.50  E-value=0.034  Score=49.22  Aligned_cols=52  Identities=21%  Similarity=0.476  Sum_probs=34.6

Q ss_pred             eeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhc------C-cCCCchhHHHHHHHH
Q 019774           60 GINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHN------E-YGPHNADFYKLWDEI  115 (336)
Q Consensus        60 G~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~------~-~~~H~~~F~~ll~~l  115 (336)
                      |.-.-+...|.|+-..-    .-.+.+.+..||.|||||.      . +.+|+++|..++.++
T Consensus        37 G~~~l~~~~I~lnp~ll----~~~~~~~l~~vv~HElcH~~~~~~g~g~~h~g~~fk~~~~~v   95 (149)
T PRK04351         37 GRYLLKDHHIEFNPKML----EEYGLEELIGIIKHELCHYHLHLEGKGYQHRDRDFKELLKQV   95 (149)
T ss_pred             heeecCCCeEEeCHHHH----hhccHHHHHhhHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHh
Confidence            34323344666665442    1234789999999999997      2 567888887777665

>KOG4345 consensus NF-kappa B regulator AP20/Cezanne [Signal transduction mechanisms]

Probab=94.03  E-value=0.0061  Score=64.85  Aligned_cols=60  Identities=15%  Similarity=0.242  Sum_probs=51.0

Q ss_pred             CCCccCCcccccccccCccccccCCCCcCCC-------------------------------------------------
Q 019774          261 GQMWQCNMCTLLNQPLALTCEACGTQRNKSV-------------------------------------------------  291 (336)
Q Consensus       261 ~~~W~C~~CT~~N~~~a~~C~aC~~~rp~~~-------------------------------------------------  291 (336)
                      ...|.|..|++.|.+.+++|.+|...++...                                                 
T Consensus         5 ~~~W~~~~~~~~~lp~al~lS~~~~s~~~~~~l~eDifk~~n~~~~~~~sd~~~~r~v~~~~~~p~f~~s~~~r~~~~~s   84 (774)
T KOG4345|consen    5 AEKWACELCDYMTLPMALVLSDFRRSTGAEPGLAEDIFKGKNWDIHAALSDYEQLRQVHEMNLTPSFCESGQPREIIHKS   84 (774)
T ss_pred             hHHHHHHhhccccCchhhHHHHHHhccCCCCCcchhhccCCCccceeecccHHHHHhhhccCCCCcccccCCcccccccc
Confidence            3579999999999999999999987766211                                                 


Q ss_pred             --CCCCCcccCCcccccCCcCccccccCCCC
Q 019774          292 --GNLKGWSCKFCTLDNSSLSERCLACGEWR  320 (336)
Q Consensus       292 --~~~~~W~C~~CT~~N~~~~~~C~~Cg~~R  320 (336)
                        ....+|.|+.|++.|++....|+.|-+.+
T Consensus        85 ~~~~~~k~~~~~~~~lnw~re~R~~~~ls~~  115 (774)
T KOG4345|consen   85 LIDRNIKWPRPSLQRLNWPREKRLSRGLSHA  115 (774)
T ss_pred             cccccccCCchHhhhhhHHHHHHHHHHhhcc
Confidence              12458999999999999999999998876

>PRK04860 hypothetical protein; Provisional

Probab=93.56  E-value=0.092  Score=47.01  Aligned_cols=32  Identities=25%  Similarity=0.445  Sum_probs=26.0

Q ss_pred             CHHHHHHHHHhhhhhcC-c------CCCchhHHHHHHHH
Q 019774           84 PYEQILDTMLHELCHNE-Y------GPHNADFYKLWDEI  115 (336)
Q Consensus        84 p~~~i~~vllHELaH~~-~------~~H~~~F~~ll~~l  115 (336)
                      +.+.+..|+.|||||.. |      .+||++|-.++.++
T Consensus        59 ~~~~l~~~v~HEl~H~~~~~~~g~~~~Hg~ewk~lm~~v   97 (160)
T PRK04860         59 QQAFIDEVVPHELAHLLVYQLFGRVAPHGKEWQWMMESV   97 (160)
T ss_pred             cHHHHHhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHh
Confidence            67899999999999975 1      48998888777663

>KOG4345 consensus NF-kappa B regulator AP20/Cezanne [Signal transduction mechanisms]

Probab=93.36  E-value=0.037  Score=59.14  Aligned_cols=68  Identities=12%  Similarity=-0.001  Sum_probs=54.3

Q ss_pred             CCCCCCCccCCcccccccccCccccccCCCCcCCC--------------------------------CC-----------
Q 019774          257 AVDVGQMWQCNMCTLLNQPLALTCEACGTQRNKSV--------------------------------GN-----------  293 (336)
Q Consensus       257 ~~~~~~~W~C~~CT~~N~~~a~~C~aC~~~rp~~~--------------------------------~~-----------  293 (336)
                      ...+..+|+|+.|+++|.+....|..|-+.+..-.                                ..           
T Consensus        85 ~~~~~~k~~~~~~~~lnw~re~R~~~~ls~~gd~~~~~~q~pq~s~~~qs~~VaL~~~l~~~l~~~dt~~~N~l~w~~h~  164 (774)
T KOG4345|consen   85 LIDRNIKWPRPSLQRLNWPREKRLSRGLSHAGDMPILAFQLPQLSVYEQSTPVALEKALFRLLPLADTGDGNCLMWGFHD  164 (774)
T ss_pred             cccccccCCchHhhhhhHHHHHHHHHHhhccCCCccchhccchhhccccccchhhhhhhhhcccccccCCccchhhhhhh
Confidence            35666899999999999999999999976662100                                00           


Q ss_pred             ------------------CCCcccCCcccccCCcCccccccCCCCCCCC
Q 019774          294 ------------------LKGWSCKFCTLDNSSLSERCLACGEWRYSNG  324 (336)
Q Consensus       294 ------------------~~~W~C~~CT~~N~~~~~~C~~Cg~~R~~s~  324 (336)
                                        ..+|.|-.||+.|++....|.+|++.+....
T Consensus       165 lvlqk~l~t~l~~~~~rw~~eW~~lik~ass~pr~~r~~~~~~~~~~e~  213 (774)
T KOG4345|consen  165 LVLQKALYTGLCYGTERWNDEWTELIKLASSEPRMHRSGNGGTGGGVEI  213 (774)
T ss_pred             HHHHHHHHHhhchhhHHHHHHHHHHHHhhcccchhhhcccCCCCCCccc
Confidence                              1349999999999999999999999887544

>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]

Probab=93.27  E-value=0.072  Score=47.38  Aligned_cols=31  Identities=29%  Similarity=0.511  Sum_probs=25.9

Q ss_pred             HHHHHHHHHhhhhhcC-------cCCCchhHHHHHHHH
Q 019774           85 YEQILDTMLHELCHNE-------YGPHNADFYKLWDEI  115 (336)
Q Consensus        85 ~~~i~~vllHELaH~~-------~~~H~~~F~~ll~~l  115 (336)
                      -+.|..|+.|||||..       +-+||.+|-.+|.++
T Consensus        58 ~~f~~~vV~HELaHl~ly~~~gr~~phg~ewk~lm~qV   95 (156)
T COG3091          58 EDFIEQVVPHELAHLHLYQEFGRYKPHGKEWKLLMQQV   95 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHh
Confidence            3578999999999985       569999998887765

>PRK03982 heat shock protein HtpX; Provisional

Probab=90.53  E-value=0.46  Score=45.81  Aligned_cols=66  Identities=12%  Similarity=0.087  Sum_probs=37.6

Q ss_pred             HHHHHhhcCceeeeecccCCC--CCCceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCCC
Q 019774           34 VQPIMRKHKWKVRILSEFCPA--NPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPH  104 (336)
Q Consensus        34 v~pIM~~~~w~V~~L~Ef~P~--~~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~H  104 (336)
                      |..+.++.++....+.-+.-.  |.=.+|.+.+++ .|.|---.-    ..++-++|..||.|||.|++|++.
T Consensus        74 v~~la~~~g~~~p~v~v~~~~~~NAfa~G~~~~~~-~V~vt~gLl----~~l~~~El~AVlAHElgHi~~~h~  141 (288)
T PRK03982         74 VERLAERANIPKPKVAIVPTQTPNAFATGRDPKHA-VVAVTEGIL----NLLNEDELEGVIAHELTHIKNRDT  141 (288)
T ss_pred             HHHHHHHcCCCCCeEEEEeCCCcceEEeccCCCCe-EEEeehHHH----hhCCHHHHHHHHHHHHHHHHcCCH
Confidence            344444555554444333111  333566655343 343322221    235779999999999999999864

>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens []

Probab=89.87  E-value=0.27  Score=45.63  Aligned_cols=99  Identities=19%  Similarity=0.183  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhcC---ceeeeecccCCCCCCceeeecCCC----cEEEEEecCCCCCCC-CCCHHHHHHHHH
Q 019774           22 DARQILEKVAKQVQPIMRKHK---WKVRILSEFCPANPSLLGINIGGG----AEVKLRLRRPNREWD-FFPYEQILDTML   93 (336)
Q Consensus        22 ~A~~~L~rlA~~v~pIM~~~~---w~V~~L~Ef~P~~~~llG~N~N~G----~~I~LRLR~~~~~~~-f~p~~~i~~vll   93 (336)
                      .|.++|+.....|..++-...   -.|..+.=+.   ...=|.-...|    .+|.|.++...+... -..-..|..||.
T Consensus        25 ~a~~~L~~a~~~V~~~ly~~~~~~~~v~~Vt~~~---~~~~gVA~t~gd~~~~~I~~S~~~i~~~~~~~~~~~Ei~Gvl~  101 (205)
T PF04450_consen   25 DAEQVLRDASRFVWRLLYQSPADRKPVRSVTLIL---DDMDGVAYTSGDDDHKEIHFSARYIAKYPADGDVRDEIIGVLY  101 (205)
T ss_pred             CHHHHHHHHHHHHHHHhCCCCCCCCcccEEEEEE---ECCCeeEEEecCCCccEEEEeHHHHhhcccccchHHHHHHHHH
Confidence            566677777777777665421   0010000000   01123322335    799999887643211 112368999999


Q ss_pred             hhhhhcCc-CCCchhHHHHHHHHHHHHHHHHH
Q 019774           94 HELCHNEY-GPHNADFYKLWDEIRKECDELMA  124 (336)
Q Consensus        94 HELaH~~~-~~H~~~F~~ll~~l~~e~~~l~~  124 (336)
                      |||+|++. .+++..+.-|++.+.+ |-.|.+
T Consensus       102 HE~~H~~Q~~~~~~~P~~liEGIAD-yVRl~a  132 (205)
T PF04450_consen  102 HEMVHCWQWDGRGTAPGGLIEGIAD-YVRLKA  132 (205)
T ss_pred             HHHHHHhhcCCCCCCChhheecHHH-HHHHHc
Confidence            99999997 4588899999988754 555654

>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase

Probab=89.31  E-value=1.1  Score=41.14  Aligned_cols=80  Identities=26%  Similarity=0.307  Sum_probs=54.7

Q ss_pred             HHHHHHHHHhhhhhcCcCCCchhHHHHHHHHHHHHHHH-HHccccCCC------------------CcccCCCcccCCCC
Q 019774           85 YEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDEL-MAKGITGTG------------------KGFDLPGRRLGGFS  145 (336)
Q Consensus        85 ~~~i~~vllHELaH~~~~~H~~~F~~ll~~l~~e~~~l-~~~G~~g~g------------------~gf~~~G~rLGG~~  145 (336)
                      ....+.=|.| ..|-.|..---++|+.|..-..+.+.- ...|+.+.|                  .++.+.|++|||.+
T Consensus        83 ~~t~lHELaH-~~~~~H~~~F~~l~~~l~~e~~~l~~~G~~~gf~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~LgG~s  161 (186)
T PF08325_consen   83 LGTMLHELAH-NVHGPHDDKFWKLLDELRKECEELDAKGYTEGFWSSGRRLGGSSGQPSEERELRGNGLSGGGQRLGGGS  161 (186)
T ss_pred             HHHHHHHHHh-cccCCccHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccCCCCcccchhhhhhccccCCCCeeCCCCC
Confidence            3566788888 568889988888888887766666663 112222222                  23567889999976


Q ss_pred             CC----CCchHHHHHHHHHHHHhh
Q 019774          146 RQ----PPLSQLRQSALAAAENRA  165 (336)
Q Consensus       146 ~~----~~~~~~r~~a~~aaekr~  165 (336)
                      ..    ......|+.+.+||++|.
T Consensus       162 ~~~~~~~~~~~~Re~~a~AAerR~  185 (186)
T PF08325_consen  162 SSRPRKAQPKSPREAAAAAAERRL  185 (186)
T ss_pred             CCCCCcCCCcCHHHHHHHHHHhhc
Confidence            53    345567888999999985

Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.

>PRK03001 M48 family peptidase; Provisional

Probab=88.78  E-value=0.58  Score=44.98  Aligned_cols=69  Identities=16%  Similarity=0.102  Sum_probs=40.7

Q ss_pred             HHHHHHHHHhhcCceeeeecccCC--CCCCceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCC
Q 019774           30 VAKQVQPIMRKHKWKVRILSEFCP--ANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGP  103 (336)
Q Consensus        30 lA~~v~pIM~~~~w~V~~L~Ef~P--~~~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~  103 (336)
                      |.+.|.-+.++.|+.+..+.-+--  .|.=..|.+.+++ .|-|---.-    .-+.-++|..||.|||+|+++++
T Consensus        69 L~~~v~~la~~~g~~~p~v~v~~~~~~NAfa~G~~~~~~-~Ivvt~gLl----~~l~~~El~aVlAHElgHi~~~h  139 (283)
T PRK03001         69 FYRMVRELAQRAGLPMPKVYLINEDQPNAFATGRNPEHA-AVAATTGIL----RVLSEREIRGVMAHELAHVKHRD  139 (283)
T ss_pred             HHHHHHHHHHHcCCCCCeEEEecCCCcceEEecCCCCCe-EEEecHHHH----hhCCHHHHHHHHHHHHHHHhCCC
Confidence            334445555666666665554421  1344567655444 344332221    13467999999999999999774

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=88.61  E-value=0.27  Score=30.86  Aligned_cols=23  Identities=22%  Similarity=0.473  Sum_probs=13.9

Q ss_pred             cccCCcccccCCcCccccccCCC
Q 019774          297 WSCKFCTLDNSSLSERCLACGEW  319 (336)
Q Consensus       297 W~C~~CT~~N~~~~~~C~~Cg~~  319 (336)
                      +.|+.|...|...+..|..||++
T Consensus         3 ~~Cp~Cg~~~~~~~~fC~~CG~~   25 (26)
T PF13248_consen    3 MFCPNCGAEIDPDAKFCPNCGAK   25 (26)
T ss_pred             CCCcccCCcCCcccccChhhCCC
Confidence            45666666666666666666653

>PRK04897 heat shock protein HtpX; Provisional

Probab=88.42  E-value=0.61  Score=45.33  Aligned_cols=70  Identities=11%  Similarity=0.004  Sum_probs=43.9

Q ss_pred             HHHHHHHHHhhcCceeeeecccCC--CCCCceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCCC
Q 019774           30 VAKQVQPIMRKHKWKVRILSEFCP--ANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPH  104 (336)
Q Consensus        30 lA~~v~pIM~~~~w~V~~L~Ef~P--~~~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~H  104 (336)
                      |.+.|..+.++.++.++.+..+--  .|.=..|.+.+++ .|.+---.-    ..++-+++..||.|||+|+++++.
T Consensus        82 L~~~v~~la~~~gip~p~v~v~~~~~~NAfa~G~~~~~~-~v~vt~gLl----~~l~~~El~aVlAHElgHi~~~d~  153 (298)
T PRK04897         82 LWHIVEDMAMVAQIPMPRVFIIDDPSPNAFATGSSPKNA-AVAVTTGLL----AIMNREELEGVIGHEISHIRNYDI  153 (298)
T ss_pred             HHHHHHHHHHHcCCCCCcEEEecCCCCceEEeccCCCCc-EEEeehHHH----hhCCHHHHHHHHHHHHHHHhcCCH
Confidence            445566666777777777766521  1334556555433 454442111    235779999999999999997764

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=87.83  E-value=0.32  Score=32.17  Aligned_cols=25  Identities=20%  Similarity=0.473  Sum_probs=17.0

Q ss_pred             cccCCcccccCC--cCccccccCCCCC
Q 019774          297 WSCKFCTLDNSS--LSERCLACGEWRY  321 (336)
Q Consensus       297 W~C~~CT~~N~~--~~~~C~~Cg~~R~  321 (336)
                      |.|..|.+.-..  ..+.|..||.++.
T Consensus         2 ~~C~~CGy~y~~~~~~~~CP~Cg~~~~   28 (33)
T cd00350           2 YVCPVCGYIYDGEEAPWVCPVCGAPKD   28 (33)
T ss_pred             EECCCCCCEECCCcCCCcCcCCCCcHH
Confidence            777777776443  3677888877653

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]

Probab=87.42  E-value=0.77  Score=43.41  Aligned_cols=73  Identities=26%  Similarity=0.222  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHhhcCceeeeecccCCCCCCceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCCC
Q 019774           26 ILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPH  104 (336)
Q Consensus        26 ~L~rlA~~v~pIM~~~~w~V~~L~Ef~P~~~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~H  104 (336)
                      .+.++...+.+....+.|+|.....=.| |.=-+|.+.+.| +|-|---.-    ..+.-++|..||.||++|+++++.
T Consensus       101 ~~~~v~~~a~~~~~~~~~~v~i~~~~~~-NAFa~g~~~~~~-~V~vt~gLl----~~l~~dEl~aVlaHElgHi~~rd~  173 (302)
T COG0501         101 LLLKVAELARQAGIPHMPEVYILETPQP-NAFALGGGPKNG-RVVVTTGLL----DLLNDDELEAVLAHELGHIKNRHT  173 (302)
T ss_pred             HHHHHHHHHHHCCCCCCCeeEEecCCCc-cceecCCCCCCe-eEEecHHHH----hhCCHHHHHHHHHHHHHHHhcccH
Confidence            4445666666666666788888874434 554556554333 565554442    257889999999999999999876

>PRK01265 heat shock protein HtpX; Provisional

Probab=86.73  E-value=1.3  Score=43.81  Aligned_cols=68  Identities=18%  Similarity=0.130  Sum_probs=41.1

Q ss_pred             HHHHHHHhhcCceeeeecccCC--CCCCceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCCC
Q 019774           32 KQVQPIMRKHKWKVRILSEFCP--ANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPH  104 (336)
Q Consensus        32 ~~v~pIM~~~~w~V~~L~Ef~P--~~~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~H  104 (336)
                      ..|.-+.++.++.++.+..+.-  .|.-..|.+..+ ..|.|---.-    ..++-+.+..||.|||.|++|++=
T Consensus        87 ~~v~~la~~~g~~~p~vyv~~~~~~NAfa~G~~~~~-~~Ivvt~gLl----~~l~~~El~aVlAHElgHik~~d~  156 (324)
T PRK01265         87 SIVAEVAKYNGIRVPKVYIADVPFPNAFAYGSPIAG-KRIAITLPLL----KILNRDEIKAVAGHELGHLKHRDV  156 (324)
T ss_pred             HHHHHHHHHcCCCCCeEEEecCCCCCeEEeccCCCC-CEEEEehHHH----hhCCHHHHHHHHHHHHHHHHcccH
Confidence            3344444556666666655421  134455665433 4565543332    346889999999999999887653

>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function

Probab=86.55  E-value=0.91  Score=36.10  Aligned_cols=61  Identities=21%  Similarity=0.108  Sum_probs=35.1

Q ss_pred             CCceeeecCC--CcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCCCchhHHHHHHHHHHHHHHHHH
Q 019774           56 PSLLGINIGG--GAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHNADFYKLWDEIRKECDELMA  124 (336)
Q Consensus        56 ~~llG~N~N~--G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~H~~~F~~ll~~l~~e~~~l~~  124 (336)
                      ..+.|.....  ...|.|+-+.        +...-..+++|||.|.....+...+.........+..+..+
T Consensus        16 ~~~~~~~~~~~~~~~I~in~~~--------~~~~~~f~laHELgH~~~~~~~~~~~~~~~~~~~~~~E~~A   78 (122)
T PF06114_consen   16 KDLGGFSIPKENNPIIFINSNL--------SPERQRFTLAHELGHILLHHGDETFNYYLNYFFNERQEREA   78 (122)
T ss_dssp             --EEEETT----TTEEEEESSS---------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--THHHHHHH
T ss_pred             CCcCEEEEecCcCCEEEECCCC--------CHHHHHHHHHHHHHHHHhhhccccchhhccccchhhHHHHH
Confidence            3444554443  5677777653        55677889999999999988876654444444444444443

A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.

>KOG3931 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.54  E-value=1.2  Score=44.69  Aligned_cols=65  Identities=26%  Similarity=0.395  Sum_probs=50.4

Q ss_pred             eeeecC--CCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcC---------cCCCchhHHHHHHHHH-----------
Q 019774           59 LGINIG--GGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNE---------YGPHNADFYKLWDEIR-----------  116 (336)
Q Consensus        59 lG~N~N--~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~---------~~~H~~~F~~ll~~l~-----------  116 (336)
                      .|+|.-  .|.-..|||-.|  ..-.+|...++.|||||+-|-.         .+.|+++|-+.+..+.           
T Consensus        76 AGICsyeg~gg~csIRLSeP--LLkLRPRkDLVETLLHEMIHAYlFV~n~~~dr~GHGP~F~~hMhrIN~~~GtNITvYH  153 (484)
T KOG3931|consen   76 AGICSYEGKGGMCSIRLSEP--LLKLRPRKDLVETLLHEMIHAYLFVTNNDKDREGHGPEFCKHMHRINSLTGTNITVYH  153 (484)
T ss_pred             cceeeeccccceEEEEecch--hhccCchHHHHHHHHHHHHHHheeEecccccCCCCChHHHHHHHHHhhccCceeEEEe
Confidence            355543  466778888775  4568999999999999999953         3579999999988764           


Q ss_pred             ------HHHHHHHHc
Q 019774          117 ------KECDELMAK  125 (336)
Q Consensus       117 ------~e~~~l~~~  125 (336)
                            ++|+..+|+
T Consensus       154 tFHDEV~~Yr~HwWR  168 (484)
T KOG3931|consen  154 TFHDEVDEYRRHWWR  168 (484)
T ss_pred             echHHHHHHHhhhhh
Confidence                  578888886

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=86.18  E-value=0.45  Score=29.86  Aligned_cols=24  Identities=29%  Similarity=0.555  Sum_probs=21.6

Q ss_pred             CccCCcccccccccCccccccCCC
Q 019774          263 MWQCNMCTLLNQPLALTCEACGTQ  286 (336)
Q Consensus       263 ~W~C~~CT~~N~~~a~~C~aC~~~  286 (336)
                      .+.|+.|...|+..+..|..||++
T Consensus         2 ~~~Cp~Cg~~~~~~~~fC~~CG~~   25 (26)
T PF13248_consen    2 EMFCPNCGAEIDPDAKFCPNCGAK   25 (26)
T ss_pred             cCCCcccCCcCCcccccChhhCCC
Confidence            468999999999999999999975

>PRK03072 heat shock protein HtpX; Provisional

Probab=85.97  E-value=1.4  Score=42.77  Aligned_cols=70  Identities=17%  Similarity=0.037  Sum_probs=41.4

Q ss_pred             HHHHHHHHHhhcCceeeeecccCCC--CCCceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCCC
Q 019774           30 VAKQVQPIMRKHKWKVRILSEFCPA--NPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPH  104 (336)
Q Consensus        30 lA~~v~pIM~~~~w~V~~L~Ef~P~--~~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~H  104 (336)
                      |.+.|.-+.++-|+.++.+..+--.  |.=..|.+.+ +..|.+--..    ...++-+.|..||.|||+|+++++-
T Consensus        72 L~~~v~~la~~~g~p~p~vyv~~~~~~NAFa~G~~~~-~~~v~vt~gL----l~~l~~~El~aVlAHElgHi~~~d~  143 (288)
T PRK03072         72 MYRIVRELSTAARQPMPRLYISPTAAPNAFATGRNPR-NAAVCCTEGI----LQILNERELRGVLGHELSHVYNRDI  143 (288)
T ss_pred             HHHHHHHHHHHcCCCCCCEEEecCCCCceEEecCCCC-CcEEEecHHH----HHhCCHHHHHHHHHHHHHHHhcCCH
Confidence            3445556666777777777665322  3334453331 2123322221    1346789999999999999998764

>PRK02870 heat shock protein HtpX; Provisional

Probab=85.13  E-value=2.6  Score=41.95  Aligned_cols=44  Identities=20%  Similarity=0.206  Sum_probs=29.1

Q ss_pred             CCCceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCC
Q 019774           55 NPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGP  103 (336)
Q Consensus        55 ~~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~  103 (336)
                      |.=.+|.+.+.+ .|.+-=-.-    ..++.+.+..||.|||+|+.|++
T Consensus       145 NAFA~G~~~~~~-~Ivvt~GLL----~~L~~dEL~aVlAHELgHik~~d  188 (336)
T PRK02870        145 NAFASGYSEKSA-MVAITTGLL----EKLDRDELQAVMAHELSHIRHGD  188 (336)
T ss_pred             ceEEecCCCCCc-EEEEehHHh----hhCCHHHHHHHHHHHHHHHHccc
Confidence            555667665433 555532221    24578999999999999997644

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=84.66  E-value=0.55  Score=28.83  Aligned_cols=21  Identities=24%  Similarity=0.550  Sum_probs=14.0

Q ss_pred             cCCcccccCCcCccccccCCC
Q 019774          299 CKFCTLDNSSLSERCLACGEW  319 (336)
Q Consensus       299 C~~CT~~N~~~~~~C~~Cg~~  319 (336)
                      |+.|...+...+..|..||++
T Consensus         2 Cp~CG~~~~~~~~fC~~CG~~   22 (23)
T PF13240_consen    2 CPNCGAEIEDDAKFCPNCGTP   22 (23)
T ss_pred             CcccCCCCCCcCcchhhhCCc
Confidence            666666666666666666654

>PF13485 Peptidase_MA_2: Peptidase MA superfamily

Probab=83.64  E-value=0.9  Score=36.43  Aligned_cols=23  Identities=22%  Similarity=0.232  Sum_probs=18.2

Q ss_pred             CCHHHHHHHHHhhhhhcCcCCCc
Q 019774           83 FPYEQILDTMLHELCHNEYGPHN  105 (336)
Q Consensus        83 ~p~~~i~~vllHELaH~~~~~H~  105 (336)
                      .+.+.+..|+.|||+|..++...
T Consensus        20 ~~~~~~~~~l~HE~~H~~~~~~~   42 (128)
T PF13485_consen   20 SDEDWLDRVLAHELAHQWFGNYF   42 (128)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHc
Confidence            35677789999999999876553

>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=82.85  E-value=1.5  Score=42.02  Aligned_cols=27  Identities=22%  Similarity=0.199  Sum_probs=21.4

Q ss_pred             CCCHHHHHHHHHhhhhhcCcCCCchhH
Q 019774           82 FFPYEQILDTMLHELCHNEYGPHNADF  108 (336)
Q Consensus        82 f~p~~~i~~vllHELaH~~~~~H~~~F  108 (336)
                      -+..+++..+++|||+|+.+++.=..|
T Consensus       190 ~~~~~el~~il~HEl~Hikr~D~~~~~  216 (299)
T PF05569_consen  190 DLSEEELRAILLHELAHIKRRDLLWKL  216 (299)
T ss_pred             ccCHHHHHHHHHHHHHHHHCCChHHHH
Confidence            356688999999999999988764333

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M56 (clan M-). The predicted active site residues for members of this family occur in the motif HEXXH. The type example is BlaR1 peptidase from Bacillus licheniformis. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription.

>PRK01345 heat shock protein HtpX; Provisional

Probab=82.13  E-value=1.8  Score=42.55  Aligned_cols=65  Identities=20%  Similarity=0.179  Sum_probs=37.3

Q ss_pred             HHHHHhhcCceeeeecccC-C-CCCCceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCC
Q 019774           34 VQPIMRKHKWKVRILSEFC-P-ANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGP  103 (336)
Q Consensus        34 v~pIM~~~~w~V~~L~Ef~-P-~~~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~  103 (336)
                      |.-+.++.++.+..+.-+. + .|.=..|.+.+++ .|.+---.-    ..++-++|..||.|||.|+++++
T Consensus        73 v~~La~~agi~~p~v~vid~~~~NAFa~G~~~~~~-~V~vt~gLL----~~L~~dEL~aVlAHElgHi~~~d  139 (317)
T PRK01345         73 VRDLARRAGLPMPKVYIIDNPQPNAFATGRNPENA-AVAATTGLL----QRLSPEEVAGVMAHELAHVKNRD  139 (317)
T ss_pred             HHHHHHHcCCCCCcEEEEcCCCcceEEecCCCCCe-EEEechHHH----hhCCHHHHHHHHHHHHHHHHcCC
Confidence            3333445555555444431 1 1444556654333 555542221    23577999999999999999754

>PRK05457 heat shock protein HtpX; Provisional

Probab=81.88  E-value=2  Score=41.56  Aligned_cols=60  Identities=13%  Similarity=0.146  Sum_probs=35.7

Q ss_pred             HhhcCceeeeecccCC---CCCCceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCC
Q 019774           38 MRKHKWKVRILSEFCP---ANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGP  103 (336)
Q Consensus        38 M~~~~w~V~~L~Ef~P---~~~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~  103 (336)
                      -++.|+.++.+.-+ |   .|.-..|.+.+++ .|.+-.-.-    ..++-++|..|+.|||.|+.+++
T Consensus        87 a~~~g~p~p~v~v~-~~~~~NAfa~G~~~~~~-~V~vt~gLl----~~L~~~El~aVlAHElgHi~~~d  149 (284)
T PRK05457         87 ARQAGIGMPEVAIY-HSPEINAFATGASKNNS-LVAVSTGLL----QNMSRDEVEAVLAHEISHIANGD  149 (284)
T ss_pred             HHhCCCCCCCEEEE-eCCCceEEEecCCCCCe-EEEeehHHh----hhCCHHHHHHHHHHHHHHHHcCC
Confidence            35556655444322 2   1444566665443 344432111    23678999999999999999875

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=81.61  E-value=0.82  Score=30.59  Aligned_cols=26  Identities=27%  Similarity=0.701  Sum_probs=17.8

Q ss_pred             CcccCCcccccCCc--CccccccCCCCC
Q 019774          296 GWSCKFCTLDNSSL--SERCLACGEWRY  321 (336)
Q Consensus       296 ~W~C~~CT~~N~~~--~~~C~~Cg~~R~  321 (336)
                      .|.|..|.+.-...  -..|..||.++.
T Consensus         2 ~~~C~~CG~i~~g~~~p~~CP~Cg~~~~   29 (34)
T cd00729           2 VWVCPVCGYIHEGEEAPEKCPICGAPKE   29 (34)
T ss_pred             eEECCCCCCEeECCcCCCcCcCCCCchH
Confidence            48888888774443  468888887653

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function

Probab=81.33  E-value=3.5  Score=37.52  Aligned_cols=83  Identities=20%  Similarity=0.161  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHhhcCceeeeecccCCCCCCceeeecCC--------CcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhh
Q 019774           27 LEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGG--------GAEVKLRLRRPNREWDFFPYEQILDTMLHELCH   98 (336)
Q Consensus        27 L~rlA~~v~pIM~~~~w~V~~L~Ef~P~~~~llG~N~N~--------G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH   98 (336)
                      +++.-..++-++...+..|.    ++|.++.-..+..+.        ..+|.|-| .+.    -...+.|..++.||+-|
T Consensus         5 i~~~~~~~~~~~~~~~i~v~----i~p~~~~~~~~~~~~g~~g~~~~~~~i~l~~-~~~----~~~~~~l~~~iaHE~hH   75 (195)
T PF10026_consen    5 IEEALEKSIELLPGPDIPVF----IFPADPENPFLIPELGGKGGGAIPGYIFLFL-LPN----DYSLEELPALIAHEYHH   75 (195)
T ss_pred             HHHHHHHHHHHcCCCCCCEE----EEeccCCCcccccccCcccccCCCCEEEEEe-cCC----cccHHHHHHHHHHHHHH
Confidence            34444445556666666666    445544332222111        34777776 432    23557999999999999


Q ss_pred             cCcCCCc---hhHHHHHHHHHHH
Q 019774           99 NEYGPHN---ADFYKLWDEIRKE  118 (336)
Q Consensus        99 ~~~~~H~---~~F~~ll~~l~~e  118 (336)
                      ++...+-   ..=..|++.+.-|
T Consensus        76 ~~r~~~~~~~~~~~TLld~~I~E   98 (195)
T PF10026_consen   76 NCRYEQIGWDPEDTTLLDSLIME   98 (195)
T ss_pred             HHHHhccCCCCCCCCHHHHHHHh
Confidence            9865432   2345677776655

>PRK14714 DNA polymerase II large subunit; Provisional

Probab=81.24  E-value=1.5  Score=50.22  Aligned_cols=54  Identities=19%  Similarity=0.374  Sum_probs=42.1

Q ss_pred             CccCCcccccccccCccccccCCCCcCCCCCCCCcccCCcccccCCc---CccccccCCCCCCCC
Q 019774          263 MWQCNMCTLLNQPLALTCEACGTQRNKSVGNLKGWSCKFCTLDNSSL---SERCLACGEWRYSNG  324 (336)
Q Consensus       263 ~W~C~~CT~~N~~~a~~C~aC~~~rp~~~~~~~~W~C~~CT~~N~~~---~~~C~~Cg~~R~~s~  324 (336)
                      .-.|+.|.-....  ..|..|++...      ..+.|+.|.......   +..|.-|+++..+..
T Consensus       667 ~rkCPkCG~~t~~--~fCP~CGs~te------~vy~CPsCGaev~~des~a~~CP~CGtplv~~~  723 (1337)
T PRK14714        667 RRRCPSCGTETYE--NRCPDCGTHTE------PVYVCPDCGAEVPPDESGRVECPRCDVELTPYQ  723 (1337)
T ss_pred             EEECCCCCCcccc--ccCcccCCcCC------CceeCccCCCccCCCccccccCCCCCCcccccc
Confidence            3789999987755  49999997742      257999999976554   779999998876543

>PRK02391 heat shock protein HtpX; Provisional

Probab=80.52  E-value=2.8  Score=40.89  Aligned_cols=67  Identities=12%  Similarity=0.006  Sum_probs=38.0

Q ss_pred             HHHHHHhhcCceeeeecccC-C-CCCCceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCCC
Q 019774           33 QVQPIMRKHKWKVRILSEFC-P-ANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPH  104 (336)
Q Consensus        33 ~v~pIM~~~~w~V~~L~Ef~-P-~~~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~H  104 (336)
                      .|..+.++.++.++.+..+- + .|.=..|.+.+++ .|.+---.    ...+.-+++..||.|||+|+.+++-
T Consensus        81 ~v~~la~~~~~~~p~v~v~~~~~~NAfa~G~~~~~~-~V~vt~gL----l~~L~~~El~aVlaHElgHi~~~di  149 (296)
T PRK02391         81 MVERLCALADLPKPRVAVADSDVPNAFATGRSPKNA-VVCVTTGL----MRRLDPDELEAVLAHELSHVKNRDV  149 (296)
T ss_pred             HHHHHHHHcCCCCCcEEEEeCCCCceEEecCCCCCc-EEEecHHH----HhhCCHHHHHHHHHHHHHHHHcCCH
Confidence            33444455565544444331 1 1444556655433 44442111    1245779999999999999998863

>COG5100 NPL4 Nuclear pore protein [Nuclear structure]

Probab=80.50  E-value=0.43  Score=48.58  Aligned_cols=25  Identities=40%  Similarity=0.844  Sum_probs=22.8

Q ss_pred             CcccCCcccccCCcCccccccCCCC
Q 019774          296 GWSCKFCTLDNSSLSERCLACGEWR  320 (336)
Q Consensus       296 ~W~C~~CT~~N~~~~~~C~~Cg~~R  320 (336)
                      .|.|+.|||.|+..|-+|+||...+
T Consensus       546 ~we~~~~~~i~~~~~~t~~m~~~~~  570 (571)
T COG5100         546 RWECKMCTFINEKNSCTCEMCNSTR  570 (571)
T ss_pred             HHHHHHHHHhcccCceEEEeecccC
Confidence            4999999999999999999998765

>cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily

Probab=80.19  E-value=1.3  Score=41.72  Aligned_cols=26  Identities=35%  Similarity=0.368  Sum_probs=22.4

Q ss_pred             CCCHHHHHHHHHhhhhhcCcCCCchh
Q 019774           82 FFPYEQILDTMLHELCHNEYGPHNAD  107 (336)
Q Consensus        82 f~p~~~i~~vllHELaH~~~~~H~~~  107 (336)
                      ..|...+..||.|||-|+.-++||..
T Consensus       161 ~~~~~~~a~t~AHElGHnlGm~HD~~  186 (244)
T cd04270         161 RVPTKESDLVTAHELGHNFGSPHDPD  186 (244)
T ss_pred             ccchhHHHHHHHHHHHHhcCCCCCCC
Confidence            45667788999999999999999864

TACE, the tumor-necrosis factor-alpha converting enzyme, releases soluble TNF-alpha from transmembrane pro-TNF-alpha.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	336
3gj7_B	98	Nuclear pore complex protein NUP153; G protein, GD	7e-08
3gj7_B	98	Nuclear pore complex protein NUP153; G protein, GD	9e-06
3gj7_B	98	Nuclear pore complex protein NUP153; G protein, GD	5e-04
3gj8_B	92	Nuclear pore complex protein NUP153; G protein, GD	7e-08
3gj8_B	92	Nuclear pore complex protein NUP153; G protein, GD	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
2crc_A	52	Ubiquitin conjugating enzyme 7 interacting protein	1e-05
1w7p_D	566	VPS36P, YLR417W; ESCRT-II complex, endosomal prote	1e-05
1w7p_D	566	VPS36P, YLR417W; ESCRT-II complex, endosomal prote	8e-05
3b08_B	64	Ranbp-type and C3HC4-type zinc finger-containing;	1e-04
3a9j_C	34	Mitogen-activated protein kinase kinase kinase 7-	1e-04

>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B* Length = 98

 Score = 48.8 bits (115), Expect = 7e-08
 Identities = 17/84 (20%), Positives = 24/84 (28%), Gaps = 30/84 (35%)

Query: 264 WQCNMCTLLNQPLALTCEACGTQRNKSVGNLKG--------------------------- 296
           WQC+ C L N+     C AC   +       K                            
Sbjct: 10  WQCDTCLLQNKVTDNKCIACQAAKLPLKETAKQTGIGTPSKSDKPASTSGTGFGDKFKPA 69

Query: 297 ---WSCKFCTLDNSSLSERCLACG 317
              W C  C + N   + +C+AC 
Sbjct: 70  IGTWDCDTCLVQNKPEAVKCVACE 93

>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B* Length = 98

 Score = 43.0 bits (100), Expect = 9e-06
 Identities = 13/59 (22%), Positives = 21/59 (35%)

Query: 229 ASESSKTSSVSNNRSGQTSSLQPSSGQKAVDVGQMWQCNMCTLLNQPLALTCEACGTQR 287
            +         +      S+     G K       W C+ C + N+P A+ C AC T +
Sbjct: 38  ETAKQTGIGTPSKSDKPASTSGTGFGDKFKPAIGTWDCDTCLVQNKPEAVKCVACETPK 96

>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B* Length = 98

 Score = 38.0 bits (87), Expect = 5e-04
 Identities = 9/40 (22%), Positives = 13/40 (32%)

Query: 297 WSCKFCTLDNSSLSERCLACGEWRYSNGPPISTPGPYPGT 336
           W C  C L N     +C+AC   +          G    +
Sbjct: 10  WQCDTCLLQNKVTDNKCIACQAAKLPLKETAKQTGIGTPS 49

>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B* Length = 92

 Score = 48.8 bits (115), Expect = 7e-08
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 24/78 (30%)

Query: 264 WQCNMCTLLNQPLALTCEACGTQRNKSVGNLKG------------------------WSC 299
           W+C +C + N+     C +C +++   V                             W C
Sbjct: 9   WECPVCCVSNKAEDSRCVSCTSEKPGLVSASSSNSVPVSLPSGGCLGLDKFKKPEGSWDC 68

Query: 300 KFCTLDNSSLSERCLACG 317
           + C + N + S +C+AC 
Sbjct: 69  EVCLVQNKADSTKCIACE 86

>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B* Length = 92

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 229 ASESSKTSSVSNNRSGQTSSLQPSSGQKAVDVG----QMWQCNMCTLLNQPLALTCEACG 284
           +  S K   VS + S       PS G   +D        W C +C + N+  +  C AC 
Sbjct: 27  SCTSEKPGLVSASSSNSVPVSLPSGGCLGLDKFKKPEGSWDCEVCLVQNKADSTKCIACE 86

Query: 285 TQR 287
           + +
Sbjct: 87  SAK 89

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 1e-06
 Identities = 28/173 (16%), Positives = 50/173 (28%), Gaps = 60/173 (34%)

Query: 3   LNDLNKVWEVKALKKIGEDDAR-QIL-----EKVAKQVQPIMRKH--------------- 41
           L  L  V   KA       +   +IL     ++V   +      H               
Sbjct: 247 LLVLLNVQNAKAWNAF---NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 42  -----KW---KVRIL-SEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPY------E 86
                K+   + + L  E    NP  L I I     ++         WD + +       
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSI-IA--ESIR---DGLAT-WDNWKHVNCDKLT 356

Query: 87  QILDTMLHELCHNEYG---------PHNAD-----FYKLWDEIRKECDELMAK 125
            I+++ L+ L   EY          P +A         +W ++ K    ++  
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 6e-05
 Identities = 49/286 (17%), Positives = 86/286 (30%), Gaps = 79/286 (27%)

Query: 67  AEVKLRLRRPNRE-------WDFFPY-EQILDTMLHELCHNEYGPHNADFYKLWDEIRKE 118
            E+   +   +         W      E+++   + E+    Y      F  L   I+ E
Sbjct: 49  EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY-----KF--LMSPIKTE 101

Query: 119 CDELMAKGITGTGKGFDLPGRRLGG----F-----SRQPPLSQLRQSA--LAAAENRARH 167
                 +  +   + +     RL      F     SR  P  +LRQ+   L  A+N    
Sbjct: 102 Q-----RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156

Query: 168 GALLPSGPNRIGGDSSIKAALSPIQAAAMAAERRLHDDM-----W-----CGS------- 210
           G L   G    G     K  +    A  +    ++   M     W     C S       
Sbjct: 157 GVL---G---SG-----KTWV----ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201

Query: 211 -KSLNSDIDVREDVGSSTDASESSKTSSVSNNRSGQTSSLQPSSGQKAV----DVGQMWQ 265
            + L   ID      S   ++   +  S+          L+    +  +    +V     
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL---LKSKPYENCLLVLLNV----- 253

Query: 266 CNMCTLLNQPLALTCEACGTQRNKSVGN-LKGWSCKFCTLDNSSLS 310
            N          L+C+   T R K V + L   +    +LD+ S++
Sbjct: 254 QNAKAW--NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens} Length = 52

 Score = 41.2 bits (96), Expect = 1e-05
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 262 QMWQCNMCTLLNQPLALTCEACGTQR 287
             WQC  CT +N+P    CE C   R
Sbjct: 9   VGWQCPGCTFINKPTRPGCEMCCRAR 34

>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Length = 566

 Score = 45.8 bits (107), Expect = 1e-05
 Identities = 14/104 (13%), Positives = 29/104 (27%), Gaps = 3/104 (2%)

Query: 233 SKTSSVSNNRSGQTSSLQPSSGQKAVDVGQMWQCNMCTLLNQPLALTCEACGTQRNKSVG 292
           +      ++ +   +    ++ Q    V     C  CT  N P    CE CG +   +  
Sbjct: 150 ADYELTKSSINCSNAIDPNANPQNQFGVNSENICPACTFANHPQIGNCEICGHRLPNA-- 207

Query: 293 NLKGWSCKFCTLDNSSLSERCLACGE-WRYSNGPPISTPGPYPG 335
           +            +S +             S+   +S+      
Sbjct: 208 SKVRSKLNRLNFHDSRVHIELEKNSLARNKSSHSALSSSSSTGS 251

>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Length = 566

 Score = 43.5 bits (101), Expect = 8e-05
 Identities = 21/135 (15%), Positives = 30/135 (22%), Gaps = 30/135 (22%)

Query: 232 SSKTSSVSNNRSGQTSSLQPSSGQKAVDVGQMWQCNMCTLLNQPLA---------LTCEA 282
            S    +          L  S+   + DV   W C +C + N+              C  
Sbjct: 86  RSPRLILFFKDPSSKDELGKSAETASADVVSTWVCPICMVSNETQGEFTKDTLPTPICIN 145

Query: 283 CGTQRNKSV---------------------GNLKGWSCKFCTLDNSSLSERCLACGEWRY 321
           CG   +  +                     G      C  CT  N      C  CG    
Sbjct: 146 CGVPADYELTKSSINCSNAIDPNANPQNQFGVNSENICPACTFANHPQIGNCEICGHRLP 205

Query: 322 SNGPPISTPGPYPGT 336
           +     S        
Sbjct: 206 NASKVRSKLNRLNFH 220

>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B* Length = 64

 Score = 39.0 bits (90), Expect = 1e-04
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 264 WQCNMCTLLNQPLALTCEACGTQR 287
           WQC  CT +N+P    CE C   R
Sbjct: 9   WQCPGCTFINKPTRPGCEMCCRAR 32

>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C Length = 34

 Score = 38.1 bits (88), Expect = 1e-04
 Identities = 12/28 (42%), Positives = 14/28 (50%)

Query: 261 GQMWQCNMCTLLNQPLALTCEACGTQRN 288
           G  W C  CT LN P  + CE C   R+
Sbjct: 6   GAQWNCTACTFLNHPALIRCEQCEMPRH 33

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	336
3gj7_B	98	Nuclear pore complex protein NUP153; G protein, GD	99.39
3gj8_B	92	Nuclear pore complex protein NUP153; G protein, GD	99.34
3gj3_B	33	Nuclear pore complex protein NUP153; G protein, GD	98.59
1w7p_D	566	VPS36P, YLR417W; ESCRT-II complex, endosomal prote	98.44
3a9j_C	34	Mitogen-activated protein kinase kinase kinase 7-	98.42
3gj3_B	33	Nuclear pore complex protein NUP153; G protein, GD	98.42
2d9g_A	53	YY1-associated factor 2; ZF-ranbp domain, structur	98.4
1nj3_A	31	NPL4; NZF domain, rubredoxin knuckle, beta-ribbon,	98.29
2d9g_A	53	YY1-associated factor 2; ZF-ranbp domain, structur	98.24
3gj5_B	34	Nuclear pore complex protein NUP153; G protein, GD	98.22
3gj5_B	34	Nuclear pore complex protein NUP153; G protein, GD	98.19
1nj3_A	31	NPL4; NZF domain, rubredoxin knuckle, beta-ribbon,	98.19
3a9j_C	34	Mitogen-activated protein kinase kinase kinase 7-	98.19
2crc_A	52	Ubiquitin conjugating enzyme 7 interacting protein	98.18
2ebq_A	47	Nuclear pore complex protein NUP153; ZF-ranbp doma	98.07
2ebr_A	47	Nuclear pore complex protein NUP153; ZF-ranbp doma	98.01
2crc_A	52	Ubiquitin conjugating enzyme 7 interacting protein	97.95
2ebq_A	47	Nuclear pore complex protein NUP153; ZF-ranbp doma	97.94
2ebr_A	47	Nuclear pore complex protein NUP153; ZF-ranbp doma	97.91
2ebv_A	57	Nuclear pore complex protein NUP153; ZF-ranbp doma	97.89
3b08_B	64	Ranbp-type and C3HC4-type zinc finger-containing;	97.87
3b08_B	64	Ranbp-type and C3HC4-type zinc finger-containing;	97.79
2ebv_A	57	Nuclear pore complex protein NUP153; ZF-ranbp doma	97.61
3gj7_B	98	Nuclear pore complex protein NUP153; G protein, GD	97.48
3gj8_B	92	Nuclear pore complex protein NUP153; G protein, GD	97.16
2k1p_A	33	Zinc finger RAN-binding domain-containing protein	97.09
2lk0_A	32	RNA-binding protein 5; zinc finger; NMR {Homo sapi	97.08
2k1p_A	33	Zinc finger RAN-binding domain-containing protein	96.93
2lk0_A	32	RNA-binding protein 5; zinc finger; NMR {Homo sapi	96.92
1n0z_A	45	ZNF265; zinc finger, RNA splicing, transcription;	96.49
1n0z_A	45	ZNF265; zinc finger, RNA splicing, transcription;	96.07
1w7p_D	566	VPS36P, YLR417W; ESCRT-II complex, endosomal prote	93.99
2j9u_B	76	VPS36, vacuolar protein sorting-associated protein	92.1
3cqb_A	107	Probable protease HTPX homolog; heat shock protein	91.66
2cr8_A	53	MDM4 protein; ZF-ranbp domain, P53-binding protein	86.83
2j9u_B	76	VPS36, vacuolar protein sorting-associated protein	85.55
3dte_A	301	IRRE protein; radiotolerance, gene regulation, met	83.12
1e8j_A	52	Rubredoxin; iron-sulfur-protein, zinc-substitution	81.71
3c37_A	253	Peptidase, M48 family; Q74D82, GSR143A, structural	81.5

>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*

Probab=99.39  E-value=6e-14  Score=114.15  Aligned_cols=62  Identities=27%  Similarity=0.673  Sum_probs=26.2

Q ss_pred             CCCccCCcccccccccCccccccCCCCcCCC------------------------------CCCCCcccCCcccccCCcC
Q 019774          261 GQMWQCNMCTLLNQPLALTCEACGTQRNKSV------------------------------GNLKGWSCKFCTLDNSSLS  310 (336)
Q Consensus       261 ~~~W~C~~CT~~N~~~a~~C~aC~~~rp~~~------------------------------~~~~~W~C~~CT~~N~~~~  310 (336)
                      ...|.|+.|+++|...+.+|.+|+++|+...                              .+.+.|.|++|++.|+..+
T Consensus         7 ~~~W~C~~C~~~N~~~~~kC~aC~~pr~~~~~~~~~~~~~~~s~~~~~~~~~~~gfgd~fk~~~g~W~C~~C~~~N~~~~   86 (98)
T 3gj7_B            7 GSSWQCDTCLLQNKVTDNKCIACQAAKLPLKETAKQTGIGTPSKSDKPASTSGTGFGDKFKPAIGTWDCDTCLVQNKPEA   86 (98)
T ss_dssp             ----------------------------------------------------------------CCEECTTTCCEECTTC
T ss_pred             CCcccCCccccCChhhcccccccCCCCCCCcccccccCccCcccccccccccccchhhccCCCCCcccCCcCcCCChhhc
Confidence            3579999999999999999999999987421                              2468899999999999999


Q ss_pred             ccccccCCCCCC
Q 019774          311 ERCLACGEWRYS  322 (336)
Q Consensus       311 ~~C~~Cg~~R~~  322 (336)
                      .+|.+|+++|+.
T Consensus        87 ~~C~aC~tpkPg   98 (98)
T 3gj7_B           87 VKCVACETPKPG   98 (98)
T ss_dssp             SBCTTTCCBCC-
T ss_pred             ceecccCCCCCC
Confidence            999999999973

>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*

Probab=99.34  E-value=2e-13  Score=109.62  Aligned_cols=63  Identities=24%  Similarity=0.653  Sum_probs=26.4

Q ss_pred             CCCCccCCcccccccccCccccccCCCCcCCC------------------------CCCCCcccCCcccccCCcCccccc
Q 019774          260 VGQMWQCNMCTLLNQPLALTCEACGTQRNKSV------------------------GNLKGWSCKFCTLDNSSLSERCLA  315 (336)
Q Consensus       260 ~~~~W~C~~CT~~N~~~a~~C~aC~~~rp~~~------------------------~~~~~W~C~~CT~~N~~~~~~C~~  315 (336)
                      +.++|.|+.|+++|++.+..|.+|+++||...                        .+.+.|.|+.|+++|+....+|.+
T Consensus         5 ~~g~W~C~~C~~~N~~~~~~C~~C~~pkp~~~~~~~~~~~~~~~~~~~~~g~~~f~~~~g~W~C~~C~~~N~a~~~~C~~   84 (92)
T 3gj8_B            5 SVGSWECPVCCVSNKAEDSRCVSCTSEKPGLVSASSSNSVPVSLPSGGCLGLDKFKKPEGSWDCEVCLVQNKADSTKCIA   84 (92)
T ss_dssp             -----------------------------------------------------------CCEECTTTCCEECSSCSBCTT
T ss_pred             CCcCCCCCcCCCEeccccceecccCCCCCCCCCccccccCcccccccccccccccCCCCCcccCCcCCcCChhhcccccc
Confidence            34689999999999999999999999998532                        156899999999999999999999


Q ss_pred             cCCCCCC
Q 019774          316 CGEWRYS  322 (336)
Q Consensus       316 Cg~~R~~  322 (336)
                      |+++|+.
T Consensus        85 C~~pkp~   91 (92)
T 3gj8_B           85 CESAKPG   91 (92)
T ss_dssp             TCCBCC-
T ss_pred             cCCCCCC
Confidence            9999985

>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A

Probab=98.59  E-value=1.6e-08  Score=66.62  Aligned_cols=29  Identities=34%  Similarity=0.865  Sum_probs=23.0

Q ss_pred             CCCCccCCcccccccccCccccccCCCCc
Q 019774          260 VGQMWQCNMCTLLNQPLALTCEACGTQRN  288 (336)
Q Consensus       260 ~~~~W~C~~CT~~N~~~a~~C~aC~~~rp  288 (336)
                      ..++|.|+.|||+|++.+.+|++|+++||
T Consensus         4 ~~g~W~C~~C~~~N~~~~~kC~aC~tpkP   32 (33)
T 3gj3_B            4 GSGTWDCDTCLVQNKPEAVKCVACETPKP   32 (33)
T ss_dssp             --CCEECTTTCCEECTTCSBCTTTCCBCC
T ss_pred             CCCceeCCcccCCCccccCEEcccCCCCC
Confidence            34678888888888888888888888876

>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54

Probab=98.44  E-value=2.4e-08  Score=102.67  Aligned_cols=63  Identities=25%  Similarity=0.560  Sum_probs=0.0

Q ss_pred             CCCCccCCccccccccc---------CccccccCCCCcCCC---------------------CCCCCcccCCcccccCCc
Q 019774          260 VGQMWQCNMCTLLNQPL---------ALTCEACGTQRNKSV---------------------GNLKGWSCKFCTLDNSSL  309 (336)
Q Consensus       260 ~~~~W~C~~CT~~N~~~---------a~~C~aC~~~rp~~~---------------------~~~~~W~C~~CT~~N~~~  309 (336)
                      ....|.|+.|+|.|+..         ...|.+||.+.+...                     .....-.|++|||.|+++
T Consensus       114 ~~~tWvC~ICsfsN~~~~~f~~~~~~~p~C~~CGi~p~~~~~k~~i~~~~~~~~~~~~~~~~~~~~~~~CP~CTF~NHPs  193 (566)
T 1w7p_D          114 VVSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSSINCSNAIDPNANPQNQFGVNSENICPACTFANHPQ  193 (566)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccceeccccccCCCCCCCCCcccCCCCcccccCCCCchhhhhhhhhccccCCCcccCccccccccCCCCCcccccCChh
Confidence            34689999999999963         357999998865322                     111346799999999999


Q ss_pred             CccccccCCCCCC
Q 019774          310 SERCLACGEWRYS  322 (336)
Q Consensus       310 ~~~C~~Cg~~R~~  322 (336)
                      ...|+|||++..+
T Consensus       194 l~~CEiCg~~L~~  206 (566)
T 1w7p_D          194 IGNCEICGHRLPN  206 (566)
T ss_dssp             -------------
T ss_pred             hhcccccCCcCCC
Confidence            9999999999876

>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C

Probab=98.42  E-value=9.7e-08  Score=62.93  Aligned_cols=27  Identities=41%  Similarity=1.091  Sum_probs=21.1

Q ss_pred             CCccCCcccccccccCccccccCCCCc
Q 019774          262 QMWQCNMCTLLNQPLALTCEACGTQRN  288 (336)
Q Consensus       262 ~~W~C~~CT~~N~~~a~~C~aC~~~rp  288 (336)
                      ..|.|+.|||+|++....|++|+++|+
T Consensus         7 ~~W~C~~CT~~N~~~~~~Ce~C~~~r~   33 (34)
T 3a9j_C            7 AQWNCTACTFLNHPALIRCEQCEMPRH   33 (34)
T ss_dssp             CCEECTTTCCEECTTCSBCTTTCCBSC
T ss_pred             CcCCCCCCccccCCCCCeeCCCCCcCc
Confidence            468888888888888888888887765

>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A

Probab=98.42  E-value=7.8e-08  Score=63.36  Aligned_cols=30  Identities=23%  Similarity=0.647  Sum_probs=26.2

Q ss_pred             CCCCcccCCcccccCCcCccccccCCCCCC
Q 019774          293 NLKGWSCKFCTLDNSSLSERCLACGEWRYS  322 (336)
Q Consensus       293 ~~~~W~C~~CT~~N~~~~~~C~~Cg~~R~~  322 (336)
                      ..+.|.|++||+.|.+...+|.+|+++|+.
T Consensus         4 ~~g~W~C~~C~~~N~~~~~kC~aC~tpkPg   33 (33)
T 3gj3_B            4 GSGTWDCDTCLVQNKPEAVKCVACETPKPG   33 (33)
T ss_dssp             --CCEECTTTCCEECTTCSBCTTTCCBCC-
T ss_pred             CCCceeCCcccCCCccccCEEcccCCCCCC
Confidence            457899999999999999999999999973

>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.40  E-value=1.8e-07  Score=67.83  Aligned_cols=30  Identities=30%  Similarity=0.824  Sum_probs=22.0

Q ss_pred             CCCccCCcccccccccCccccccCCCCcCC
Q 019774          261 GQMWQCNMCTLLNQPLALTCEACGTQRNKS  290 (336)
Q Consensus       261 ~~~W~C~~CT~~N~~~a~~C~aC~~~rp~~  290 (336)
                      ...|.|+.|||+|.+.+..|++|+++|+.+
T Consensus         9 ~~~W~C~~CT~~N~~~~~~C~~C~~pr~~s   38 (53)
T 2d9g_A            9 EGYWDCSVCTFRNSAEAFKCMMCDVRKGTS   38 (53)
T ss_dssp             CCCEECSSSCCEECSSCSSCSSSCCCCCCC
T ss_pred             CCCcCCCCCccCCCCCCCccCCCCCcCCcc
Confidence            346777777777777777777777777654

>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A

Probab=98.29  E-value=2.9e-07  Score=59.42  Aligned_cols=26  Identities=46%  Similarity=1.062  Sum_probs=19.2

Q ss_pred             CCccCCcccccccccCccccccCCCC
Q 019774          262 QMWQCNMCTLLNQPLALTCEACGTQR  287 (336)
Q Consensus       262 ~~W~C~~CT~~N~~~a~~C~aC~~~r  287 (336)
                      ..|.|+.|||+|++....|++|+.+|
T Consensus         5 ~~W~C~~CTf~N~~~~~~Ce~C~~~r   30 (31)
T 1nj3_A            5 AMWACQHCTFMNQPGTGHCEMCSLPR   30 (31)
T ss_dssp             CCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred             ccccCCcccccCCCCCCccCCcCCCC
Confidence            46777777777777777777777665

>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.24  E-value=9.7e-07  Score=64.00  Aligned_cols=32  Identities=25%  Similarity=0.649  Sum_probs=28.6

Q ss_pred             CCCCcccCCcccccCCcCccccccCCCCCCCC
Q 019774          293 NLKGWSCKFCTLDNSSLSERCLACGEWRYSNG  324 (336)
Q Consensus       293 ~~~~W~C~~CT~~N~~~~~~C~~Cg~~R~~s~  324 (336)
                      ..+.|.|+.|||+|+.....|+||+++|+.+.
T Consensus         8 ~~~~W~C~~CT~~N~~~~~~C~~C~~pr~~s~   39 (53)
T 2d9g_A            8 DEGYWDCSVCTFRNSAEAFKCMMCDVRKGTST   39 (53)
T ss_dssp             CCCCEECSSSCCEECSSCSSCSSSCCCCCCCC
T ss_pred             CCCCcCCCCCccCCCCCCCccCCCCCcCCccc
Confidence            35689999999999999999999999998543

>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1

Probab=98.22  E-value=4.2e-07  Score=60.20  Aligned_cols=30  Identities=23%  Similarity=0.663  Sum_probs=20.8

Q ss_pred             CCCCccCCcccccccccCccccccCCCCcC
Q 019774          260 VGQMWQCNMCTLLNQPLALTCEACGTQRNK  289 (336)
Q Consensus       260 ~~~~W~C~~CT~~N~~~a~~C~aC~~~rp~  289 (336)
                      ..+.|.|+.|++.|..++.+|.+|++++|.
T Consensus         4 ~~G~W~C~~C~v~N~~~~~kC~aCet~Kpg   33 (34)
T 3gj5_B            4 GSGSWDCEVCLVQNKADSTKCIACESAKPG   33 (34)
T ss_dssp             --CCEECTTTCCEECSSCSBCTTTCCBC--
T ss_pred             CCCceECCeeEeECccccCEEcccCCcCCC
Confidence            346788888888888888888888877764

>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1

Probab=98.19  E-value=5.1e-07  Score=59.81  Aligned_cols=30  Identities=27%  Similarity=0.753  Sum_probs=25.5

Q ss_pred             CCCCcccCCcccccCCcCccccccCCCCCC
Q 019774          293 NLKGWSCKFCTLDNSSLSERCLACGEWRYS  322 (336)
Q Consensus       293 ~~~~W~C~~CT~~N~~~~~~C~~Cg~~R~~  322 (336)
                      +.+.|.|+.|++.|..+..+|.+|+++|+.
T Consensus         4 ~~G~W~C~~C~v~N~~~~~kC~aCet~Kpg   33 (34)
T 3gj5_B            4 GSGSWDCEVCLVQNKADSTKCIACESAKPG   33 (34)
T ss_dssp             --CCEECTTTCCEECSSCSBCTTTCCBC--
T ss_pred             CCCceECCeeEeECccccCEEcccCCcCCC
Confidence            467999999999999999999999999975

>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A

Probab=98.19  E-value=6.4e-07  Score=57.79  Aligned_cols=27  Identities=30%  Similarity=0.658  Sum_probs=25.3

Q ss_pred             CCCcccCCcccccCCcCccccccCCCC
Q 019774          294 LKGWSCKFCTLDNSSLSERCLACGEWR  320 (336)
Q Consensus       294 ~~~W~C~~CT~~N~~~~~~C~~Cg~~R  320 (336)
                      ...|.|+.|||.|++....|+||+.+|
T Consensus         4 ~~~W~C~~CTf~N~~~~~~Ce~C~~~r   30 (31)
T 1nj3_A            4 SAMWACQHCTFMNQPGTGHCEMCSLPR   30 (31)
T ss_dssp             SCCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred             CccccCCcccccCCCCCCccCCcCCCC
Confidence            357999999999999999999999988

>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C

Probab=98.19  E-value=5.8e-07  Score=59.16  Aligned_cols=28  Identities=32%  Similarity=0.572  Sum_probs=25.9

Q ss_pred             CCCcccCCcccccCCcCccccccCCCCC
Q 019774          294 LKGWSCKFCTLDNSSLSERCLACGEWRY  321 (336)
Q Consensus       294 ~~~W~C~~CT~~N~~~~~~C~~Cg~~R~  321 (336)
                      ...|.|+.|||.|.+....|+||+++|+
T Consensus         6 ~~~W~C~~CT~~N~~~~~~Ce~C~~~r~   33 (34)
T 3a9j_C            6 GAQWNCTACTFLNHPALIRCEQCEMPRH   33 (34)
T ss_dssp             CCCEECTTTCCEECTTCSBCTTTCCBSC
T ss_pred             CCcCCCCCCccccCCCCCeeCCCCCcCc
Confidence            3589999999999999999999999985

>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}

Probab=98.18  E-value=1.1e-06  Score=63.42  Aligned_cols=29  Identities=38%  Similarity=0.862  Sum_probs=21.2

Q ss_pred             CCccCCcccccccccCccccccCCCCcCC
Q 019774          262 QMWQCNMCTLLNQPLALTCEACGTQRNKS  290 (336)
Q Consensus       262 ~~W~C~~CT~~N~~~a~~C~aC~~~rp~~  290 (336)
                      ..|.|+.|||+|++....|++|+.+|+..
T Consensus         9 ~~W~Cp~CTf~N~p~~~~CemC~~prp~~   37 (52)
T 2crc_A            9 VGWQCPGCTFINKPTRPGCEMCCRARPEA   37 (52)
T ss_dssp             SSBCCTTTCCCBCTTCSSCSSSCCCCCTT
T ss_pred             CCccCCCcccccCCCCCeeCCCCCcCCcc
Confidence            36777777777777777777777777643

>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.07  E-value=2.5e-06  Score=60.44  Aligned_cols=31  Identities=35%  Similarity=0.844  Sum_probs=21.6

Q ss_pred             CCCCccCCcccccccccCccccccCCCCcCC
Q 019774          260 VGQMWQCNMCTLLNQPLALTCEACGTQRNKS  290 (336)
Q Consensus       260 ~~~~W~C~~CT~~N~~~a~~C~aC~~~rp~~  290 (336)
                      ..+.|.|..|++.|...+.+|.+|++++|..
T Consensus         8 ~~g~W~C~~C~v~N~a~~~kC~aCetpKpgs   38 (47)
T 2ebq_A            8 VIGTWDCDTCLVQNKPEAIKCVACETPKPGT   38 (47)
T ss_dssp             CSSSEECSSSCCEECSSCSBCSSSCCBCSCS
T ss_pred             CCCceECCeeeccCccCCceecCcCCCCCCC
Confidence            3456777777777777777777777777654

>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.01  E-value=4.4e-06  Score=59.15  Aligned_cols=31  Identities=29%  Similarity=0.744  Sum_probs=17.7

Q ss_pred             CCCcccCCcccccCCcCccccccCCCCCCCC
Q 019774          294 LKGWSCKFCTLDNSSLSERCLACGEWRYSNG  324 (336)
Q Consensus       294 ~~~W~C~~CT~~N~~~~~~C~~Cg~~R~~s~  324 (336)
                      .+.|.|..|++.|.....+|.+|+++|+.+.
T Consensus         9 ~gsW~C~~C~v~N~a~~~kC~aC~~pkpg~~   39 (47)
T 2ebr_A            9 EGSWDCELCLVQNKADSTKCLACESAKPGTK   39 (47)
T ss_dssp             CSSCCCSSSCCCCCSSCSBCSSSCCBCCCCC
T ss_pred             CCeeECCeeecCCcCCcceecCcCCCCCCCc
Confidence            3455555555555555555555555555544

>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}

Probab=97.95  E-value=7.8e-06  Score=59.03  Aligned_cols=30  Identities=30%  Similarity=0.560  Sum_probs=27.6

Q ss_pred             CCcccCCcccccCCcCccccccCCCCCCCC
Q 019774          295 KGWSCKFCTLDNSSLSERCLACGEWRYSNG  324 (336)
Q Consensus       295 ~~W~C~~CT~~N~~~~~~C~~Cg~~R~~s~  324 (336)
                      ..|.|+.|||.|......|+||+.+|+...
T Consensus         9 ~~W~Cp~CTf~N~p~~~~CemC~~prp~~~   38 (52)
T 2crc_A            9 VGWQCPGCTFINKPTRPGCEMCCRARPEAY   38 (52)
T ss_dssp             SSBCCTTTCCCBCTTCSSCSSSCCCCCTTS
T ss_pred             CCccCCCcccccCCCCCeeCCCCCcCCccc
Confidence            489999999999999999999999998653

>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.94  E-value=4.7e-06  Score=59.00  Aligned_cols=35  Identities=23%  Similarity=0.595  Sum_probs=31.4

Q ss_pred             CCCCCcccCCcccccCCcCccccccCCCCCCCCCC
Q 019774          292 GNLKGWSCKFCTLDNSSLSERCLACGEWRYSNGPP  326 (336)
Q Consensus       292 ~~~~~W~C~~CT~~N~~~~~~C~~Cg~~R~~s~Pp  326 (336)
                      .+.+.|.|..|++.|.....+|.+|+++|+.+.+.
T Consensus         7 ~~~g~W~C~~C~v~N~a~~~kC~aCetpKpgs~~~   41 (47)
T 2ebq_A            7 GVIGTWDCDTCLVQNKPEAIKCVACETPKPGTCVK   41 (47)
T ss_dssp             CCSSSEECSSSCCEECSSCSBCSSSCCBCSCSSCG
T ss_pred             CCCCceECCeeeccCccCCceecCcCCCCCCCccC
Confidence            35678999999999999999999999999987753

>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.91  E-value=6.9e-06  Score=58.14  Aligned_cols=33  Identities=21%  Similarity=0.616  Sum_probs=29.4

Q ss_pred             CCCCCccCCcccccccccCccccccCCCCcCCC
Q 019774          259 DVGQMWQCNMCTLLNQPLALTCEACGTQRNKSV  291 (336)
Q Consensus       259 ~~~~~W~C~~CT~~N~~~a~~C~aC~~~rp~~~  291 (336)
                      ...+.|.|+.|++.|...+.+|.+|++++|...
T Consensus         7 ~~~gsW~C~~C~v~N~a~~~kC~aC~~pkpg~~   39 (47)
T 2ebr_A            7 GPEGSWDCELCLVQNKADSTKCLACESAKPGTK   39 (47)
T ss_dssp             SCCSSCCCSSSCCCCCSSCSBCSSSCCBCCCCC
T ss_pred             CCCCeeECCeeecCCcCCcceecCcCCCCCCCc
Confidence            345789999999999999999999999999764

>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.89  E-value=2.2e-05  Score=57.68  Aligned_cols=30  Identities=20%  Similarity=0.602  Sum_probs=26.7

Q ss_pred             CCCCCccCCcccccccccCccccccCCCCc
Q 019774          259 DVGQMWQCNMCTLLNQPLALTCEACGTQRN  288 (336)
Q Consensus       259 ~~~~~W~C~~CT~~N~~~a~~C~aC~~~rp  288 (336)
                      ...+.|.|+.|.+.|.....+|.+|++++|
T Consensus        27 ~~~GsWeC~~C~V~N~a~~~kC~ACetpKP   56 (57)
T 2ebv_A           27 RPIGSWECSVCCVSNNAEDNKCVSCMSEKP   56 (57)
T ss_dssp             CCSSSCCCSSSCCCCCSSCSBCSSSCCBCC
T ss_pred             CCCCeeeCCeeEccCccCCceeeEcCCcCC
Confidence            445789999999999999999999999987

>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*

Probab=97.87  E-value=5.9e-06  Score=62.07  Aligned_cols=29  Identities=38%  Similarity=0.866  Sum_probs=20.5

Q ss_pred             CCccCCcccccccccCccccccCCCCcCC
Q 019774          262 QMWQCNMCTLLNQPLALTCEACGTQRNKS  290 (336)
Q Consensus       262 ~~W~C~~CT~~N~~~a~~C~aC~~~rp~~  290 (336)
                      ..|.|+.|||+|++....|++|+++++..
T Consensus         7 ~~W~CP~CTf~N~p~~p~CEmC~~prp~~   35 (64)
T 3b08_B            7 VGWQCPGCTFINKPTRPGCEMCCRARPET   35 (64)
T ss_dssp             CSEECTTTCCEECTTCSBCTTTCCBCCSS
T ss_pred             CCCcCCCccccCCCCCCccCcCCCCCCcc
Confidence            35777777777777777777777776643

>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*

Probab=97.79  E-value=1.6e-05  Score=59.75  Aligned_cols=31  Identities=29%  Similarity=0.525  Sum_probs=27.9

Q ss_pred             CCCcccCCcccccCCcCccccccCCCCCCCC
Q 019774          294 LKGWSCKFCTLDNSSLSERCLACGEWRYSNG  324 (336)
Q Consensus       294 ~~~W~C~~CT~~N~~~~~~C~~Cg~~R~~s~  324 (336)
                      ...|.|+.|||.|+.....|+||+++|++..
T Consensus         6 ~~~W~CP~CTf~N~p~~p~CEmC~~prp~~~   36 (64)
T 3b08_B            6 PVGWQCPGCTFINKPTRPGCEMCCRARPETY   36 (64)
T ss_dssp             CCSEECTTTCCEECTTCSBCTTTCCBCCSSC
T ss_pred             CCCCcCCCccccCCCCCCccCcCCCCCCccc
Confidence            3479999999999999999999999998653

>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.61  E-value=3.3e-05  Score=56.71  Aligned_cols=31  Identities=19%  Similarity=0.699  Sum_probs=28.2

Q ss_pred             CCCCCcccCCcccccCCcCccccccCCCCCC
Q 019774          292 GNLKGWSCKFCTLDNSSLSERCLACGEWRYS  322 (336)
Q Consensus       292 ~~~~~W~C~~CT~~N~~~~~~C~~Cg~~R~~  322 (336)
                      .+.+.|.|..|.+.|.....+|.+|+++|+.
T Consensus        27 ~~~GsWeC~~C~V~N~a~~~kC~ACetpKPG   57 (57)
T 2ebv_A           27 RPIGSWECSVCCVSNNAEDNKCVSCMSEKPG   57 (57)
T ss_dssp             CCSSSCCCSSSCCCCCSSCSBCSSSCCBCCC
T ss_pred             CCCCeeeCCeeEccCccCCceeeEcCCcCCC
Confidence            3567999999999999999999999999973

>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*

Probab=97.48  E-value=3.7e-05  Score=62.28  Aligned_cols=29  Identities=34%  Similarity=0.848  Sum_probs=26.2

Q ss_pred             CCCCccCCcccccccccCccccccCCCCc
Q 019774          260 VGQMWQCNMCTLLNQPLALTCEACGTQRN  288 (336)
Q Consensus       260 ~~~~W~C~~CT~~N~~~a~~C~aC~~~rp  288 (336)
                      ..+.|.|+.|++.|...+.+|.+|+++||
T Consensus        69 ~~g~W~C~~C~~~N~~~~~~C~aC~tpkP   97 (98)
T 3gj7_B           69 AIGTWDCDTCLVQNKPEAVKCVACETPKP   97 (98)
T ss_dssp             --CCEECTTTCCEECTTCSBCTTTCCBCC
T ss_pred             CCCcccCCcCcCCChhhcceecccCCCCC
Confidence            45789999999999999999999999987

>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*

Probab=97.16  E-value=0.00015  Score=57.81  Aligned_cols=30  Identities=23%  Similarity=0.666  Sum_probs=26.3

Q ss_pred             CCCCccCCcccccccccCccccccCCCCcC
Q 019774          260 VGQMWQCNMCTLLNQPLALTCEACGTQRNK  289 (336)
Q Consensus       260 ~~~~W~C~~CT~~N~~~a~~C~aC~~~rp~  289 (336)
                      ..+.|.|+.|+++|+..+..|.+|+++||.
T Consensus        62 ~~g~W~C~~C~~~N~a~~~~C~~C~~pkp~   91 (92)
T 3gj8_B           62 PEGSWDCEVCLVQNKADSTKCIACESAKPG   91 (92)
T ss_dssp             --CCEECTTTCCEECSSCSBCTTTCCBCC-
T ss_pred             CCCcccCCcCCcCChhhcccccccCCCCCC
Confidence            458999999999999999999999999985

>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A

Probab=97.09  E-value=0.00035  Score=45.65  Aligned_cols=28  Identities=29%  Similarity=0.741  Sum_probs=19.6

Q ss_pred             CCCccCCcccccccccCccccccCCCCc
Q 019774          261 GQMWQCNMCTLLNQPLALTCEACGTQRN  288 (336)
Q Consensus       261 ~~~W~C~~CT~~N~~~a~~C~aC~~~rp  288 (336)
                      .+.|.|+.|..+|......|..|+++|+
T Consensus         4 ~gDW~C~~C~~~Nfa~R~~C~~C~~pk~   31 (33)
T 2k1p_A            4 ANDWQCKTCSNVNWARRSECNMCNTPKY   31 (33)
T ss_dssp             SSSCBCSSSCCBCCTTCSBCSSSCCBTT
T ss_pred             CCCcccCCCCCccccccccccccCCcCC
Confidence            4567777777777777777777777665

>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*

Probab=97.08  E-value=0.00021  Score=46.41  Aligned_cols=27  Identities=37%  Similarity=0.804  Sum_probs=18.3

Q ss_pred             CCccCCcccccccccCccccccCCCCc
Q 019774          262 QMWQCNMCTLLNQPLALTCEACGTQRN  288 (336)
Q Consensus       262 ~~W~C~~CT~~N~~~a~~C~aC~~~rp  288 (336)
                      +.|.|+.|.++|......|..|+++|+
T Consensus         4 gDW~C~~C~~~Nfa~r~~C~~C~~pr~   30 (32)
T 2lk0_A            4 EDWLCNKCCLNNFRKRLKCFRCGADKF   30 (32)
T ss_dssp             SEEECTTTCCEEETTCCBCTTTCCBTT
T ss_pred             CCCCcCcCcCCcChhcceecCCCCcCC
Confidence            457776677777776666777766665

>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A

Probab=96.93  E-value=0.0006  Score=44.54  Aligned_cols=30  Identities=27%  Similarity=0.673  Sum_probs=27.7

Q ss_pred             CCCCcccCCcccccCCcCccccccCCCCCC
Q 019774          293 NLKGWSCKFCTLDNSSLSERCLACGEWRYS  322 (336)
Q Consensus       293 ~~~~W~C~~CT~~N~~~~~~C~~Cg~~R~~  322 (336)
                      +.+.|.|+.|.+.|+..-..|-.|++||+.
T Consensus         3 ~~gDW~C~~C~~~Nfa~R~~C~~C~~pk~~   32 (33)
T 2k1p_A            3 SANDWQCKTCSNVNWARRSECNMCNTPKYA   32 (33)
T ss_dssp             SSSSCBCSSSCCBCCTTCSBCSSSCCBTTC
T ss_pred             CCCCcccCCCCCccccccccccccCCcCCC
Confidence            467899999999999999999999999964

>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*

Probab=96.92  E-value=0.0003  Score=45.71  Aligned_cols=30  Identities=27%  Similarity=0.832  Sum_probs=27.5

Q ss_pred             CCCCcccCCcccccCCcCccccccCCCCCC
Q 019774          293 NLKGWSCKFCTLDNSSLSERCLACGEWRYS  322 (336)
Q Consensus       293 ~~~~W~C~~CT~~N~~~~~~C~~Cg~~R~~  322 (336)
                      +.+.|.|+.|.+.|...-..|-.|+++|+.
T Consensus         2 k~gDW~C~~C~~~Nfa~r~~C~~C~~pr~~   31 (32)
T 2lk0_A            2 KFEDWLCNKCCLNNFRKRLKCFRCGADKFD   31 (32)
T ss_dssp             CCSEEECTTTCCEEETTCCBCTTTCCBTTC
T ss_pred             CCCCCCcCcCcCCcChhcceecCCCCcCCC
Confidence            467899999999999999999999999963

>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1

Probab=96.49  E-value=0.003  Score=44.07  Aligned_cols=32  Identities=22%  Similarity=0.587  Sum_probs=24.3

Q ss_pred             CCCCCCccCC--cccccccccCccccccCCCCcC
Q 019774          258 VDVGQMWQCN--MCTLLNQPLALTCEACGTQRNK  289 (336)
Q Consensus       258 ~~~~~~W~C~--~CT~~N~~~a~~C~aC~~~rp~  289 (336)
                      ....+.|.|+  .|..+|......|..|+++|+.
T Consensus         9 ~~~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~   42 (45)
T 1n0z_A            9 RVSDGDWICPDKKCGNVNFARRTSCDRCGREKTT   42 (45)
T ss_dssp             SSCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCC
T ss_pred             CCCCCCcCCCCCCCCCEEccccccccccCCcCCC
Confidence            3455678888  7888888888888888888765

>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1

Probab=96.07  E-value=0.0046  Score=43.07  Aligned_cols=32  Identities=22%  Similarity=0.421  Sum_probs=29.0

Q ss_pred             CCCCCcccC--CcccccCCcCccccccCCCCCCC
Q 019774          292 GNLKGWSCK--FCTLDNSSLSERCLACGEWRYSN  323 (336)
Q Consensus       292 ~~~~~W~C~--~CT~~N~~~~~~C~~Cg~~R~~s  323 (336)
                      .+.++|.|+  .|.+.|+..-..|-.|+++|+..
T Consensus        10 ~~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~~   43 (45)
T 1n0z_A           10 VSDGDWICPDKKCGNVNFARRTSCDRCGREKTTG   43 (45)
T ss_dssp             SCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCCC
T ss_pred             CCCCCcCCCCCCCCCEEccccccccccCCcCCCC
Confidence            467899999  89999999999999999999753

>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54

Probab=93.99  E-value=0.0097  Score=61.35  Aligned_cols=28  Identities=32%  Similarity=0.655  Sum_probs=0.0

Q ss_pred             CCccCCcccccccccCccccccCCCCcC
Q 019774          262 QMWQCNMCTLLNQPLALTCEACGTQRNK  289 (336)
Q Consensus       262 ~~W~C~~CT~~N~~~a~~C~aC~~~rp~  289 (336)
                      ..=.||.|||+|.++-..|++|+++-+.
T Consensus       179 ~~~~CP~CTF~NHPsl~~CEiCg~~L~~  206 (566)
T 1w7p_D          179 SENICPACTFANHPQIGNCEICGHRLPN  206 (566)
T ss_dssp             ----------------------------
T ss_pred             cCCCCCcccccCChhhhcccccCCcCCC
Confidence            3567999999999999999999988654

>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1

Probab=92.10  E-value=0.043  Score=42.22  Aligned_cols=29  Identities=28%  Similarity=0.749  Sum_probs=20.3

Q ss_pred             CCCCccCCcccccccccCc---------cccccCCCCc
Q 019774          260 VGQMWQCNMCTLLNQPLAL---------TCEACGTQRN  288 (336)
Q Consensus       260 ~~~~W~C~~CT~~N~~~a~---------~C~aC~~~rp  288 (336)
                      ....|.|+.|.|.|+....         .|.+||...+
T Consensus        14 ~~~tWVCpICsfsN~v~s~fdp~~~~lPpC~aCGIkP~   51 (76)
T 2j9u_B           14 VVSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPAD   51 (76)
T ss_dssp             -CEEEECTTTCCEEEESSCCCTTCSSCCBCTTTCCBCC
T ss_pred             cccceECccccccCcCccccCCCCCCCCcccccCccCC
Confidence            3457999999999987654         3666665543

>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}

Probab=91.66  E-value=0.14  Score=41.16  Aligned_cols=73  Identities=15%  Similarity=0.032  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCceeeeecccCCCCCCceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCc
Q 019774           22 DARQILEKVAKQVQPIMRKHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEY  101 (336)
Q Consensus        22 ~A~~~L~rlA~~v~pIM~~~~w~V~~L~Ef~P~~~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~  101 (336)
                      +-.+++++++....    -..++|-.+..-.| |.-.+|...+ +..|.|-.-.-    ..+.-+++..||.|||+|+.+
T Consensus        27 ~L~~~~~~l~~~~~----~~~~~v~v~~~~~~-NAf~~g~~~~-~~~i~v~~gLl----~~l~~~El~aVlaHElgH~~~   96 (107)
T 3cqb_A           27 WLLETVGRQAQQAG----IGMPTVAIYDSADI-NAFATGAKRD-DSLVAVSTGLL----HNMTRDEAEAVLAHEVSHIAN   96 (107)
T ss_dssp             HHHHHHHHHHHHHT----CCCCEEEEECCSSE-EEEEECCC---CCEEEEEHHHH----HHSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcC----CCCCeEEEEECCCc-CEEEEecCCC-CCEEEEcHHHH----hhCCHHHHHHHHHHHHHHHHC
Confidence            34445555554332    11245554433111 4444554432 33565554221    235889999999999999998


Q ss_pred             CCC
Q 019774          102 GPH  104 (336)
Q Consensus       102 ~~H  104 (336)
                      +++
T Consensus        97 ~h~   99 (107)
T 3cqb_A           97 GDM   99 (107)
T ss_dssp             TCE
T ss_pred             CCH
Confidence            764

>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1

Probab=86.83  E-value=0.52  Score=33.65  Aligned_cols=30  Identities=30%  Similarity=0.643  Sum_probs=22.3

Q ss_pred             CCCCCCccCCcccccccccCccccccCCCC
Q 019774          258 VDVGQMWQCNMCTLLNQPLALTCEACGTQR  287 (336)
Q Consensus       258 ~~~~~~W~C~~CT~~N~~~a~~C~aC~~~r  287 (336)
                      .-..+.|.|..|--.|++....|..|-.-|
T Consensus         6 ~~~eD~WkC~~C~k~N~Pl~ryC~rCwaLR   35 (53)
T 2cr8_A            6 SGSEDEWQCTECKKFNSPSKRYCFRCWALR   35 (53)
T ss_dssp             SCCSCCEECSSSCCEECSSCCBCTTTCCBC
T ss_pred             CCCcceeecccccccCCCccchhHHHHHhh
Confidence            334567888888888888888888887665

>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1

Probab=85.55  E-value=0.26  Score=37.88  Aligned_cols=27  Identities=30%  Similarity=0.797  Sum_probs=21.1

Q ss_pred             CCcccCCcccccCCcCc---------cccccCCCCC
Q 019774          295 KGWSCKFCTLDNSSLSE---------RCLACGEWRY  321 (336)
Q Consensus       295 ~~W~C~~CT~~N~~~~~---------~C~~Cg~~R~  321 (336)
                      ..|.|+.|.|.|...+.         .|.+||-..+
T Consensus        16 ~tWVCpICsfsN~v~s~fdp~~~~lPpC~aCGIkP~   51 (76)
T 2j9u_B           16 STWVCPICMVSNETQGEFTKDTLPTPICINCGVPAD   51 (76)
T ss_dssp             EEEECTTTCCEEEESSCCCTTCSSCCBCTTTCCBCC
T ss_pred             cceECccccccCcCccccCCCCCCCCcccccCccCC
Confidence            47999999999986655         4888886544

>3dte_A IRRE protein; radiotolerance, gene regulation, metallopeptidase; 2.60A {Deinococcus deserti} PDB: 3dti_A 3dtk_A

Probab=83.12  E-value=4  Score=38.69  Aligned_cols=59  Identities=12%  Similarity=0.013  Sum_probs=43.1

Q ss_pred             HHHHHhhcCc-eeeeecccCCCCCCceeeecCCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhhhhcCcCCCc
Q 019774           34 VQPIMRKHKW-KVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFFPYEQILDTMLHELCHNEYGPHN  105 (336)
Q Consensus        34 v~pIM~~~~w-~V~~L~Ef~P~~~~llG~N~N~G~~I~LRLR~~~~~~~f~p~~~i~~vllHELaH~~~~~H~  105 (336)
                      +.-|+.+.|. .|-. .+| +   ...|+..+....|.|+-+.        +.....-||+|||+|++...+.
T Consensus        54 ~~~Iae~lGI~~V~~-~~L-~---~~~G~~~~~~~~I~LN~~~--------~~~rqrFTLAHELGHllLh~~~  113 (301)
T 3dte_A           54 THSLMHGLDGITLTF-MPM-G---QRDGAYDPEHHVILINSQV--------RPERQRFTLAHEISHALLLGDD  113 (301)
T ss_dssp             HHHHHHTCSSCEEEE-ECC-T---TCCEEEETTTTEEEEETTS--------CHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHCCCcEEEE-EcC-C---CCCEEEECCCcEEEEcCCC--------ChhhHHHHHHHHHHHHHhcccc
Confidence            7788888888 6653 333 3   2467766667788888664        5678889999999999876554

>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A

Probab=81.71  E-value=0.84  Score=32.46  Aligned_cols=11  Identities=18%  Similarity=0.754  Sum_probs=7.0

Q ss_pred             CccCCcccccc
Q 019774          263 MWQCNMCTLLN  273 (336)
Q Consensus       263 ~W~C~~CT~~N  273 (336)
                      .|.|..|.++=
T Consensus         3 ~y~C~~CGyvY   13 (52)
T 1e8j_A            3 IYVCTVCGYEY   13 (52)
T ss_dssp             CEECSSSCCCC
T ss_pred             cEEeCCCCeEE
Confidence            46677776663

>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}

Probab=81.50  E-value=0.84  Score=41.68  Aligned_cols=77  Identities=13%  Similarity=0.182  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHHHHHh--hcCceeeeecccCCCCCCceeeecCCCcEEEEEecCCCCCCCCC-CHHHHHHHHHhhhh
Q 019774           21 DDARQILEKVAKQVQPIMR--KHKWKVRILSEFCPANPSLLGINIGGGAEVKLRLRRPNREWDFF-PYEQILDTMLHELC   97 (336)
Q Consensus        21 ~~A~~~L~rlA~~v~pIM~--~~~w~V~~L~Ef~P~~~~llG~N~N~G~~I~LRLR~~~~~~~f~-p~~~i~~vllHELa   97 (336)
                      .+..++|++|+..+..-+.  ...|+|-.+.-=.| |.-.+|     |..|.|.--.-    ..+ .-+.|..||.|||+
T Consensus        40 ~~l~~~l~~l~~~l~~~~~~~~~~~~v~v~~~~~~-NAfa~~-----gg~I~v~~gLl----~~l~~~~ELaaVLaHElg  109 (253)
T 3c37_A           40 PEVQRYVDKVGKRLLSGARAVEFDYVFKVVKDDSV-NAFAIP-----GGRVYVHTGLL----KAADNETELAGVLAHEIN  109 (253)
T ss_dssp             HHHHHHHHHHHHHHHHTSSCCCSCCEEEEECCCSC-CEEEET-----TTEEEEEHHHH----HHCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeCCCC-CeeEcC-----CCeEEeeHHHH----hhCCCHHHHHHHHHHHHH
Confidence            3456677777776544333  33577766632111 222222     44676654432    234 67899999999999


Q ss_pred             hcCcCCCchh
Q 019774           98 HNEYGPHNAD  107 (336)
Q Consensus        98 H~~~~~H~~~  107 (336)
                      |+.++++-..
T Consensus       110 H~~~~H~~~~  119 (253)
T 3c37_A          110 HAVARHGTRQ  119 (253)
T ss_dssp             HHHTTHHHHH
T ss_pred             HHHCcCHHHH
Confidence            9998866443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	336
d2gqea1	29	Nuclear pore complex protein nup153 {Human (Homo s	98.14
d2gqea1	29	Nuclear pore complex protein nup153 {Human (Homo s	97.98
d1q5wa_	31	Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}	97.96
d1q5wa_	31	Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}	97.63
d1n0za_	45	Znf265, first zinc-finger domain {Human (Homo sapi	96.51
d1n0za_	45	Znf265, first zinc-finger domain {Human (Homo sapi	95.93
d2j9ub1	47	Vacuolar protein-sorting-associated protein 36, VP	91.59
d6rxna_	45	Rubredoxin {Desulfovibrio desulfuricans, strain 27	85.08
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	82.2

>d2gqea1 g.41.11.1 (A:3-31) Nuclear pore complex protein nup153 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Nuclear pore complex protein nup153
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=4.3e-07  Score=56.58  Aligned_cols=27  Identities=37%  Similarity=0.977  Sum_probs=21.9

Q ss_pred             CCccCCcccccccccCccccccCCCCc
Q 019774          262 QMWQCNMCTLLNQPLALTCEACGTQRN  288 (336)
Q Consensus       262 ~~W~C~~CT~~N~~~a~~C~aC~~~rp  288 (336)
                      +.|.|+.|.+.|..++.+|.+|++++|
T Consensus         3 GsWeC~~C~v~N~~~~~~CvAC~tpkP   29 (29)
T d2gqea1           3 GTWDCDTCLVQNKPEAIKCVACETPKP   29 (29)
T ss_dssp             CCEECSSSCCEECTTCSBCSSSCCBCC
T ss_pred             ceeECCceEeEChhhCCEEeecCCCCC
Confidence            568888888888888888888888776

>d2gqea1 g.41.11.1 (A:3-31) Nuclear pore complex protein nup153 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Nuclear pore complex protein nup153
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.3e-06  Score=54.34  Aligned_cols=27  Identities=26%  Similarity=0.725  Sum_probs=25.9

Q ss_pred             CCcccCCcccccCCcCccccccCCCCC
Q 019774          295 KGWSCKFCTLDNSSLSERCLACGEWRY  321 (336)
Q Consensus       295 ~~W~C~~CT~~N~~~~~~C~~Cg~~R~  321 (336)
                      +.|+|..|.+.|..+..+|.+|+++||
T Consensus         3 GsWeC~~C~v~N~~~~~~CvAC~tpkP   29 (29)
T d2gqea1           3 GTWDCDTCLVQNKPEAIKCVACETPKP   29 (29)
T ss_dssp             CCEECSSSCCEECTTCSBCSSSCCBCC
T ss_pred             ceeECCceEeEChhhCCEEeecCCCCC
Confidence            689999999999999999999999986

>d1q5wa_ g.41.11.1 (A:) Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Npl4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.96  E-value=1.9e-06  Score=53.26  Aligned_cols=26  Identities=46%  Similarity=1.062  Sum_probs=20.4

Q ss_pred             CCccCCcccccccccCccccccCCCC
Q 019774          262 QMWQCNMCTLLNQPLALTCEACGTQR  287 (336)
Q Consensus       262 ~~W~C~~CT~~N~~~a~~C~aC~~~r  287 (336)
                      ..|+|..|||.|.+....|++|.-||
T Consensus         5 amWsC~HCTf~N~pgtd~CeMC~LPr   30 (31)
T d1q5wa_           5 AMWACQHCTFMNQPGTGHCEMCSLPR   30 (31)
T ss_dssp             CCEECSSSCCEECTTCSBCTTTCCBC
T ss_pred             ceeEeeeeeeecCCCCCcchhhccCC
Confidence            46888888888888888888887665

>d1q5wa_ g.41.11.1 (A:) Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Npl4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.63  E-value=1.3e-05  Score=49.47  Aligned_cols=27  Identities=30%  Similarity=0.658  Sum_probs=24.9

Q ss_pred             CCCcccCCcccccCCcCccccccCCCC
Q 019774          294 LKGWSCKFCTLDNSSLSERCLACGEWR  320 (336)
Q Consensus       294 ~~~W~C~~CT~~N~~~~~~C~~Cg~~R  320 (336)
                      ...|+|..|||.|.+.-..|+||.-||
T Consensus         4 samWsC~HCTf~N~pgtd~CeMC~LPr   30 (31)
T d1q5wa_           4 SAMWACQHCTFMNQPGTGHCEMCSLPR   30 (31)
T ss_dssp             CCCEECSSSCCEECTTCSBCTTTCCBC
T ss_pred             cceeEeeeeeeecCCCCCcchhhccCC
Confidence            357999999999999999999999887

>d1n0za_ g.41.11.1 (A:) Znf265, first zinc-finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Znf265, first zinc-finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.0012  Score=44.53  Aligned_cols=32  Identities=22%  Similarity=0.587  Sum_probs=25.7

Q ss_pred             CCCCCCccCC--cccccccccCccccccCCCCcC
Q 019774          258 VDVGQMWQCN--MCTLLNQPLALTCEACGTQRNK  289 (336)
Q Consensus       258 ~~~~~~W~C~--~CT~~N~~~a~~C~aC~~~rp~  289 (336)
                      .+..+.|.|+  .|.++|......|..|+++|+.
T Consensus         9 ~~~~GDW~C~~~~C~~~NFa~R~~C~rC~~~r~~   42 (45)
T d1n0za_           9 RVSDGDWICPDKKCGNVNFARRTSCDRCGREKTT   42 (45)
T ss_dssp             SSCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCC
T ss_pred             CCCCCCccCCCCCCCCeeccccCcccCCCCcCCC
Confidence            4566788886  6888888888888888888764

>d1n0za_ g.41.11.1 (A:) Znf265, first zinc-finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Znf265, first zinc-finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.0028  Score=42.68  Aligned_cols=31  Identities=23%  Similarity=0.430  Sum_probs=28.2

Q ss_pred             CCCCCcccC--CcccccCCcCccccccCCCCCC
Q 019774          292 GNLKGWSCK--FCTLDNSSLSERCLACGEWRYS  322 (336)
Q Consensus       292 ~~~~~W~C~--~CT~~N~~~~~~C~~Cg~~R~~  322 (336)
                      .+.+.|.|+  .|.++|+..-..|--|+++|+.
T Consensus        10 ~~~GDW~C~~~~C~~~NFa~R~~C~rC~~~r~~   42 (45)
T d1n0za_          10 VSDGDWICPDKKCGNVNFARRTSCDRCGREKTT   42 (45)
T ss_dssp             SCSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCC
T ss_pred             CCCCCccCCCCCCCCeeccccCcccCCCCcCCC
Confidence            457899997  7999999999999999999975

>d2j9ub1 g.41.11.1 (B:115-161) Vacuolar protein-sorting-associated protein 36, VPS36 {Saccharomyces cerevisiae [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Vacuolar protein-sorting-associated protein 36, VPS36
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=91.59  E-value=0.022  Score=38.05  Aligned_cols=25  Identities=28%  Similarity=0.853  Sum_probs=18.2

Q ss_pred             CCccCCcccccccccC---------ccccccCCC
Q 019774          262 QMWQCNMCTLLNQPLA---------LTCEACGTQ  286 (336)
Q Consensus       262 ~~W~C~~CT~~N~~~a---------~~C~aC~~~  286 (336)
                      ++|.|+.|.+.|+...         ..|..||.+
T Consensus         2 s~W~CPICm~~Ne~~~e~~~n~~~~p~C~nCGV~   35 (47)
T d2j9ub1           2 STWVCPICMVSNETQGEFTKDTLPTPICINCGVP   35 (47)
T ss_dssp             EEEECTTTCCEEEESSCCCTTCSSCCBCTTTCCB
T ss_pred             cceecceeeeeccceeeeccCCCCCCcccccCCc
Confidence            3699999999987642         457777755

>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]

Probab=85.08  E-value=0.11  Score=34.57  Aligned_cols=10  Identities=30%  Similarity=0.856  Sum_probs=5.9

Q ss_pred             CccCCccccc
Q 019774          263 MWQCNMCTLL  272 (336)
Q Consensus       263 ~W~C~~CT~~  272 (336)
                      .|.|..|.++
T Consensus         3 ~y~C~~Cgyi   12 (45)
T d6rxna_           3 KYVCNVCGYE   12 (45)
T ss_dssp             CEEETTTCCE
T ss_pred             CeEeCCCCeE
Confidence            4666666655

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.20  E-value=0.23  Score=31.57  Aligned_cols=27  Identities=26%  Similarity=0.571  Sum_probs=18.3

Q ss_pred             CCcccCCcccccCCcC-ccccccCCCCC
Q 019774          295 KGWSCKFCTLDNSSLS-ERCLACGEWRY  321 (336)
Q Consensus       295 ~~W~C~~CT~~N~~~~-~~C~~Cg~~R~  321 (336)
                      ..|.|..|++.-.... .+|..|+.++.
T Consensus         4 ~~~~C~vCG~i~~g~~P~~CPvCg~~~~   31 (37)
T d1nnqa2           4 KVYICPICGYTAVDEAPEYCPVCGAPKE   31 (37)
T ss_dssp             CEEECTTTCCEEESCCCSBCTTTCCBGG
T ss_pred             cEEECCCCCCEecCCCCCcCCCCCCcHH
Confidence            3578888877655543 67888877664