BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019775
(336 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FXA|A Chain A, Crystal Structure Of A Putative Sugar-Phosphate Isomerase
(Lmof2365_0531) From Listeria Monocytogenes Str. 4b
F2365 At 1.60 A Resolution
pdb|3FXA|B Chain B, Crystal Structure Of A Putative Sugar-Phosphate Isomerase
(Lmof2365_0531) From Listeria Monocytogenes Str. 4b
F2365 At 1.60 A Resolution
pdb|3FXA|C Chain C, Crystal Structure Of A Putative Sugar-Phosphate Isomerase
(Lmof2365_0531) From Listeria Monocytogenes Str. 4b
F2365 At 1.60 A Resolution
pdb|3FXA|D Chain D, Crystal Structure Of A Putative Sugar-Phosphate Isomerase
(Lmof2365_0531) From Listeria Monocytogenes Str. 4b
F2365 At 1.60 A Resolution
Length = 201
Score = 103 bits (258), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 87/163 (53%)
Query: 48 QTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVM 107
+ + +C G I G G SG A K+ + + + FL P DA+HG +G+L +DIL++
Sbjct: 39 EKIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILIL 98
Query: 108 FSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVT 167
SK GNT ELL ++P K KG+ L+ VT + +A D+ + V +E PF+
Sbjct: 99 ISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNXLATA 158
Query: 168 STAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFK 210
ST + D V + + N T+++++ HP G +G L+ K
Sbjct: 159 STXAVIASFDAVIVCLXTYXNYTKEQFSVIHPGGAVGNKLLNK 201
>pdb|2XHZ|A Chain A, Probing The Active Site Of The Sugar Isomerase Domain From
E. Coli Arabinose-5-Phosphate Isomerase Via X-Ray
Crystallography
pdb|2XHZ|B Chain B, Probing The Active Site Of The Sugar Isomerase Domain From
E. Coli Arabinose-5-Phosphate Isomerase Via X-Ray
Crystallography
pdb|2XHZ|C Chain C, Probing The Active Site Of The Sugar Isomerase Domain From
E. Coli Arabinose-5-Phosphate Isomerase Via X-Ray
Crystallography
pdb|2XHZ|D Chain D, Probing The Active Site Of The Sugar Isomerase Domain From
E. Coli Arabinose-5-Phosphate Isomerase Via X-Ray
Crystallography
Length = 183
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 95/167 (56%), Gaps = 1/167 (0%)
Query: 22 DLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGI 81
++ +++ L Q+++ TL + + C+G + G+G SG + K++ T S G
Sbjct: 18 EVLAIERECLAELDQYINQNFTLA-CEKMFWCKGKVVVMGMGASGHIGRKMAATFASTGT 76
Query: 82 KSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNA 141
S F++P +A HGD+G+++ D+++ S SG + E+ ++P K L+ +T ++
Sbjct: 77 PSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPESS 136
Query: 142 LAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARN 188
+A D+++ + V +E CP LAP +ST +V GD +A+A++ AR
Sbjct: 137 MARAADVHLCVKVAKEACPLGLAPTSSTTATLVMGDALAVALLKARG 183
>pdb|3ETN|A Chain A, Crystal Structure Of Putative Phosphosugar Isomerase
Involved In Capsule Formation (Yp_209877.1) From
Bacteroides Fragilis Nctc 9343 At 1.70 A Resolution
pdb|3ETN|B Chain B, Crystal Structure Of Putative Phosphosugar Isomerase
Involved In Capsule Formation (Yp_209877.1) From
Bacteroides Fragilis Nctc 9343 At 1.70 A Resolution
pdb|3ETN|C Chain C, Crystal Structure Of Putative Phosphosugar Isomerase
Involved In Capsule Formation (Yp_209877.1) From
Bacteroides Fragilis Nctc 9343 At 1.70 A Resolution
pdb|3ETN|D Chain D, Crystal Structure Of Putative Phosphosugar Isomerase
Involved In Capsule Formation (Yp_209877.1) From
Bacteroides Fragilis Nctc 9343 At 1.70 A Resolution
Length = 220
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 84/160 (52%), Gaps = 2/160 (1%)
Query: 48 QTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVM 107
+ + + +G + +G GK+G +A I+ T S GI S FL+P +A HGD+GIL +D+L++
Sbjct: 53 EQIHRKKGKLVTSGXGKAGQIAXNIATTFCSTGIPSVFLHPSEAQHGDLGILQENDLLLL 112
Query: 108 FSKSGNTEELLKVVPCAK--AKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAP 165
S SG T E++++ A G + +T + LA+ D+ + E+C P
Sbjct: 113 ISNSGKTREIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLSTGHPAEVCTLGXTP 172
Query: 166 VTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGK 205
TST + V GD + + T +EY+ H G +G+
Sbjct: 173 TTSTTVXTVIGDILVVQTXKRTEFTIEEYSKRHHGGYLGE 212
>pdb|3K2V|A Chain A, Structure Of The Cbs Pair Of A Putative D-Arabinose
5-Phosphate Isomerase From Klebsiella Pneumoniae Subsp.
Pneumoniae.
pdb|3K2V|B Chain B, Structure Of The Cbs Pair Of A Putative D-Arabinose
5-Phosphate Isomerase From Klebsiella Pneumoniae Subsp.
Pneumoniae
Length = 149
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 4/149 (2%)
Query: 186 ARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCL 245
AR T +++A +HP G +G+ L+ +V D+ E+P + D L+E+T K G
Sbjct: 5 ARGFTAEDFALSHPGGALGRKLLLRVNDIXHTGDEIPHVGLQATLRDALLEITRKNLGXT 64
Query: 246 LVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMES 305
+ D++ ++IG FTDGDLRR +G ++ ++ R I P +AV+A+ +S
Sbjct: 65 AICDDDXNIIGIFTDGDLRRVFD-TGVDXRDASIADVXTRGGIRIRPGTLAVDALNLXQS 123
Query: 306 PPSPVQFLPVINRQNILIGIVTLHGLVSA 334
++ + L+G+V H L+ A
Sbjct: 124 RHITC---VLVADGDHLLGVVHXHDLLRA 149
>pdb|3FNA|A Chain A, Crystal Structure Of The Cbs Pair Of Possible D-Arabinose
5-Phosphate Isomerase Yrbh From Escherichia Coli Cft073
pdb|3FNA|B Chain B, Crystal Structure Of The Cbs Pair Of Possible D-Arabinose
5-Phosphate Isomerase Yrbh From Escherichia Coli Cft073
Length = 149
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 80/149 (53%), Gaps = 4/149 (2%)
Query: 186 ARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCL 245
AR T +++A +HP G +G+ L+ +V D+ E+P K+ + D L+E+T K G
Sbjct: 5 ARGFTAEDFALSHPGGALGRKLLLRVNDIXHTGDEIPHVKKTASLRDALLEVTRKNLGXT 64
Query: 246 LVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMES 305
++ D+ + G FTDGDLRR G + +L++ ++ + P +AVEA+ +S
Sbjct: 65 VICDDNXXIEGIFTDGDLRRVFD-XGVDVRRLSIADVXTPGGIRVRPGILAVEALNLXQS 123
Query: 306 PPSPVQFLPVINRQNILIGIVTLHGLVSA 334
+ + V + + L+G++ H L+ A
Sbjct: 124 --RHITSVXVADGDH-LLGVLHXHDLLRA 149
>pdb|1VIM|A Chain A, Crystal Structure Of An Hypothetical Protein
pdb|1VIM|B Chain B, Crystal Structure Of An Hypothetical Protein
pdb|1VIM|C Chain C, Crystal Structure Of An Hypothetical Protein
pdb|1VIM|D Chain D, Crystal Structure Of An Hypothetical Protein
Length = 200
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 19 TLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLIS 78
+LL + +H+ H+ L T+ L+ +IF G G+SG++A + L+
Sbjct: 13 SLLRFLEVVSEHIKNLRNHIDLE-TVGEMIKLIDSARSIFVIGAGRSGYIAKAFAMRLMH 71
Query: 79 LG----IKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSV 134
LG + + P ++ D+LV S SG T ++ + AK G+ LV+V
Sbjct: 72 LGYTVYVVGETVTPR---------ITDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAV 122
Query: 135 TSVEGNALAAVCDMNV----HLPVERELCPFDLAPVTS--TAIQMVFGDTVAIAMMGARN 188
T ++LA + D+ + + ER+ LAP+ + M+F D + +M ++
Sbjct: 123 TGKRDSSLAKMADVVMVVKGKMKQERDEILSQLAPLGTMFELTAMIFLDALVAEIMMQKH 182
Query: 189 LTRDEYAANHP 199
LT + A H
Sbjct: 183 LTEKDLEARHA 193
>pdb|1JEO|A Chain A, Crystal Structure Of The Hypothetical Protein Mj1247 From
Methanococcus Jannaschii At 2.0 A Resolution Infers A
Molecular Function Of 3-Hexulose-6-Phosphate Isomerase
Length = 180
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 8/142 (5%)
Query: 57 IFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEE 116
IF GVG+SG++ + L+ LG KS F+ + DD+L++ S SG TE
Sbjct: 43 IFIFGVGRSGYIGRCFAMRLMHLGFKSYFVGETTTPSYE-----KDDLLILISGSGRTES 97
Query: 117 LLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFG 176
+L V AK ++++ GN + ++ +P+E + + T ++F
Sbjct: 98 VLTVAKKAKNINNNIIAIVXEXGNVVEFA---DLTIPLEVKKSKYLPMGTTFEETALIFL 154
Query: 177 DTVAIAMMGARNLTRDEYAANH 198
D V +M NL E H
Sbjct: 155 DLVIAEIMKRLNLDESEIIKRH 176
>pdb|1X94|A Chain A, Crystal Structure Of A Hypothetical Protein
pdb|1X94|B Chain B, Crystal Structure Of A Hypothetical Protein
Length = 191
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 103 DILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLP 153
D+L S SGN+ +LK + AKAKG +++T +G +A + D+ + +P
Sbjct: 113 DVLFGLSTSGNSGNILKAIEAAKAKGMKTIALTGKDGGKMAGLADVEIRVP 163
>pdb|2P9M|A Chain A, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|B Chain B, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|C Chain C, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|D Chain D, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
Length = 138
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK 268
KV+DV K + K + +++ + L VID+E +IG T D+ L
Sbjct: 8 IKVKDVX--TKNVITAKRHEGVVEAFEKXLKYKISSLPVIDDENKVIGIVTTTDIGYNL- 64
Query: 269 ASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKME---SPPSPVQFLPVINRQNILIGI 325
+ + T+G++ + TI DA +EA++K + + LPV+++ N L+GI
Sbjct: 65 IRDKYTLETTIGDVXTKDVITIHEDASILEAIKKXDISGKKEEIINQLPVVDKNNKLVGI 124
Query: 326 VT 327
++
Sbjct: 125 IS 126
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 14/83 (16%)
Query: 188 NLTRDEYAANHPAGRIGKSLIFKVQD---VMKPQKELPVCKEGDLIMDQLVELTSKGCGC 244
NL RD+Y G + + + + +++ K+ + + + I++QL
Sbjct: 63 NLIRDKYTLETTIGDVXTKDVITIHEDASILEAIKKXDISGKKEEIINQL---------- 112
Query: 245 LLVIDEEYHLIGTFTDGDLRRTL 267
V+D+ L+G +DGD+ RT+
Sbjct: 113 -PVVDKNNKLVGIISDGDIIRTI 134
>pdb|1J5X|A Chain A, Crystal Structure Of Glucosamine-6-Phosphate Deaminase
(Tm0813) From Thermotoga Maritima At 1.8 A Resolution
Length = 342
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 3/134 (2%)
Query: 27 QQDHLNYFFQH--LSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLIS-LGIKS 83
Q++ L FF++ L+L T F++ + F G G S +A IS L I++
Sbjct: 23 QKNELKKFFENFVLNLEKTEIFSEIQKNLTDEVLFVGCGSSYNLALTISYYFERVLKIRT 82
Query: 84 GFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALA 143
+ + I L + +FS++GNT E+L K + + +T E + LA
Sbjct: 83 KAIPAGEVAFQKIPDLEERGLAFLFSRTGNTTEVLLANDVLKKRNHRTIGITIEEESRLA 142
Query: 144 AVCDMNVHLPVERE 157
D+ + PV E
Sbjct: 143 KESDLPLVFPVREE 156
>pdb|2I22|A Chain A, Crystal Structure Of Escherichia Coli Phosphoheptose
Isomerase In Complex With Reaction Substrate
Sedoheptulose 7-Phosphate
pdb|2I22|B Chain B, Crystal Structure Of Escherichia Coli Phosphoheptose
Isomerase In Complex With Reaction Substrate
Sedoheptulose 7-Phosphate
pdb|2I22|C Chain C, Crystal Structure Of Escherichia Coli Phosphoheptose
Isomerase In Complex With Reaction Substrate
Sedoheptulose 7-Phosphate
pdb|2I22|D Chain D, Crystal Structure Of Escherichia Coli Phosphoheptose
Isomerase In Complex With Reaction Substrate
Sedoheptulose 7-Phosphate
pdb|2I2W|A Chain A, Crystal Structure Of Escherichia Coli Phosphoheptose
Isomerase
pdb|2I2W|B Chain B, Crystal Structure Of Escherichia Coli Phosphoheptose
Isomerase
pdb|2I2W|C Chain C, Crystal Structure Of Escherichia Coli Phosphoheptose
Isomerase
pdb|2I2W|D Chain D, Crystal Structure Of Escherichia Coli Phosphoheptose
Isomerase
Length = 212
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 31/51 (60%)
Query: 103 DILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLP 153
D+L+ S SGN+ ++K + A+ KG ++++T +G +A D+ + +P
Sbjct: 133 DVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVP 183
>pdb|3SL7|A Chain A, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
pdb|3SL7|B Chain B, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
Length = 180
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 60/153 (39%), Gaps = 26/153 (16%)
Query: 209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK 268
+ V D P++ L V K + D L L K L VID+ + L+G +D DL
Sbjct: 4 YTVGDFXTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDS 63
Query: 269 ASG------------EGIFKLTVGEMCNRSPRTIG--------PDAMAVEAMQKMESPP- 307
SG + +K T E+ +T G P + V +E
Sbjct: 64 ISGRSQNDTNLFPDVDSTWK-TFNELQKLISKTYGKVVGDLXTPSPLVVRDSTNLEDAAR 122
Query: 308 ----SPVQFLPVINRQNILIGIVTLHGLVSAGL 336
+ + LPV++ LIGI+T +V A L
Sbjct: 123 LLLETKFRRLPVVDADGKLIGILTRGNVVRAAL 155
>pdb|2A3N|A Chain A, Crystal Structure Of A Putative
Glucosamine-fructose-6-phosphate Aminotransferase
(stm4540.s) From Salmonella Typhimurium Lt2 At 1.35 A
Resolution
Length = 355
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 55 GTIFFTGVGKS---GFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKS 111
++FF VG S N+ ++ L +L + + +H L+ D +++ SKS
Sbjct: 55 SSLFFASVGGSLAPXXAINEFAKELTTLPVYVE--QAAELIHKGNKRLNKDSVVITLSKS 112
Query: 112 GNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLP 153
G+T+E + + KA+G +V++T + LA H+P
Sbjct: 113 GDTKESVAIAEWCKAQGIRVVAITKNADSPLAQAATW--HIP 152
>pdb|4GQW|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop
Deletion) From Arabidopsis Thaliana
Length = 152
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 14/141 (9%)
Query: 208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTL 267
++ V + M +++L V K + + L L VIDE++ L+G +D DL
Sbjct: 4 VYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLAL- 62
Query: 268 KASGEGIFKL--TVGEMCNRSP-RTIG----PDAMAVEAMQKMESPP-----SPVQFLPV 315
SG+ +K V ++ +++ + +G P + VE +E + + LPV
Sbjct: 63 -DSGDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPV 121
Query: 316 INRQNILIGIVTLHGLVSAGL 336
++ L+GI+T +V A L
Sbjct: 122 VDSDGKLVGIITRGNVVRAAL 142
>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
pdb|1VRD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
Length = 494
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 59/113 (52%), Gaps = 7/113 (6%)
Query: 222 PVCKEGDLIMDQLVELTSK-GCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVG 280
P+ D+ + + ++L ++ G L V+DEE L+G T+ D+R + + K
Sbjct: 105 PITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFE-----KNLSKKIKD 159
Query: 281 EMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS 333
M R + P +++E +++ ++ LP++++ N L+G++T+ ++S
Sbjct: 160 LMTPREKLIVAPPDISLEKAKEILHQHR-IEKLPLVSKDNKLVGLITIKDIMS 211
>pdb|2X3Y|A Chain A, Crystal Structure Of Gmha From Burkholderia Pseudomallei
pdb|2X3Y|B Chain B, Crystal Structure Of Gmha From Burkholderia Pseudomallei
pdb|2X3Y|C Chain C, Crystal Structure Of Gmha From Burkholderia Pseudomallei
pdb|2X3Y|D Chain D, Crystal Structure Of Gmha From Burkholderia Pseudomallei
pdb|2X3Y|E Chain E, Crystal Structure Of Gmha From Burkholderia Pseudomallei
pdb|2X3Y|F Chain F, Crystal Structure Of Gmha From Burkholderia Pseudomallei
pdb|2X3Y|G Chain G, Crystal Structure Of Gmha From Burkholderia Pseudomallei
pdb|2X3Y|H Chain H, Crystal Structure Of Gmha From Burkholderia Pseudomallei
Length = 219
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 103 DILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLP 153
D+L+ +S SG + +L AKAKG V T G + +CD+ + +P
Sbjct: 139 DVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVP 189
>pdb|2XBL|A Chain A, Crystal Structure Of Gmha From Burkholderia Pseudomallei
In Complex With Product
pdb|2XBL|B Chain B, Crystal Structure Of Gmha From Burkholderia Pseudomallei
In Complex With Product
pdb|2XBL|C Chain C, Crystal Structure Of Gmha From Burkholderia Pseudomallei
In Complex With Product
pdb|2XBL|D Chain D, Crystal Structure Of Gmha From Burkholderia Pseudomallei
In Complex With Product
Length = 198
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 103 DILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLP 153
D+L+ +S SG + +L AKAKG V T G + +CD+ + +P
Sbjct: 118 DVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVP 168
>pdb|4GQV|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 From
Arabidopsis Thaliana
Length = 166
Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 24/155 (15%)
Query: 206 SLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265
S ++ V + M +++L V K + + L L VIDE++ L+G +D DL
Sbjct: 2 SGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLA 61
Query: 266 TLKASGEGIFKLTVGEMCNRSPRTIG-------------------PDAMAVEAMQKMESP 306
SG G + ++ + + +T P + VE +E
Sbjct: 62 LDSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDA 121
Query: 307 P-----SPVQFLPVINRQNILIGIVTLHGLVSAGL 336
+ + LPV++ L+GI+T +V A L
Sbjct: 122 AKILLETKYRRLPVVDSDGKLVGIITRGNVVRAAL 156
>pdb|1VIV|A Chain A, Crystal Structure Of A Hypothetical Protein
pdb|1VIV|B Chain B, Crystal Structure Of A Hypothetical Protein
Length = 197
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 23/154 (14%)
Query: 57 IFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGI--LSSDDILVMFSKSGNT 114
IF G G+SG +A + L+ +G + + G+I L+ D++++ S SG T
Sbjct: 41 IFTAGAGRSGLMAKSFAMRLMHMGFNAHIV-------GEILTPPLAEGDLVIIGSGSGET 93
Query: 115 EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQ-- 172
+ L+ AK+ + ++T +++ D+ + +P P D + + IQ
Sbjct: 94 KSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPG----SPKDQSNGSYKTIQPM 149
Query: 173 --------MVFGDTVAIAMMGARNLTRDEYAANH 198
++F D V + +M + L + +H
Sbjct: 150 GSLFEQTLLLFYDAVILKLMEKKGLDSETMFTHH 183
>pdb|1M3S|A Chain A, Crystal Structure Of Yckf From Bacillus Subtilis
pdb|1M3S|B Chain B, Crystal Structure Of Yckf From Bacillus Subtilis
Length = 186
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 23/154 (14%)
Query: 57 IFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGI--LSSDDILVMFSKSGNT 114
IF G G+SG +A + L+ +G + + G+I L+ D++++ S SG T
Sbjct: 40 IFTAGAGRSGLMAKSFAMRLMHMGFNAHIV-------GEILTPPLAEGDLVIIGSGSGET 92
Query: 115 EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQ-- 172
+ L+ AK+ + ++T +++ D+ + +P P D + + IQ
Sbjct: 93 KSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPG----SPKDQSNGSYKTIQPM 148
Query: 173 --------MVFGDTVAIAMMGARNLTRDEYAANH 198
++F D V + +M + L + +H
Sbjct: 149 GSLFEQTLLLFYDAVILKLMEKKGLDSETMFTHH 182
>pdb|2V4M|A Chain A, The Isomerase Domain Of Human Glutamine-Fructose-6-
Phosphate Transaminase 1 (Gfpt1) In Complex With
Fructose 6-Phosphate
pdb|2V4M|B Chain B, The Isomerase Domain Of Human Glutamine-Fructose-6-
Phosphate Transaminase 1 (Gfpt1) In Complex With
Fructose 6-Phosphate
pdb|2V4M|C Chain C, The Isomerase Domain Of Human Glutamine-Fructose-6-
Phosphate Transaminase 1 (Gfpt1) In Complex With
Fructose 6-Phosphate
pdb|2V4M|D Chain D, The Isomerase Domain Of Human Glutamine-Fructose-6-
Phosphate Transaminase 1 (Gfpt1) In Complex With
Fructose 6-Phosphate
Length = 376
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 9/126 (7%)
Query: 50 LLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFS 109
L+ C GT + GV V ++++ + + + S FL+ + DD+ S
Sbjct: 66 LIAC-GTSYHAGVATRQ-VLEELTELPVMVELASDFLDRNTPVF-------RDDVCFFLS 116
Query: 110 KSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTST 169
+SG T + L + K +GA V +T+ G++++ D VH+ E+ TS
Sbjct: 117 QSGETADTLMGLRYCKERGALTVGITNTVGSSISRETDCGVHINAGPEIGVASTKAYTSQ 176
Query: 170 AIQMVF 175
+ +V
Sbjct: 177 FVSLVM 182
>pdb|2ZJ3|A Chain A, Isomerase Domain Of Human Glucose:fructose-6-Phosphate
Amidotransferase
pdb|2ZJ4|A Chain A, Isomerase Domain Of Human Glucose:fructose-6-Phosphate
Amidotransferase
Length = 375
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 9/126 (7%)
Query: 50 LLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFS 109
L+ C GT + GV V ++++ + + + S FL+ + DD+ S
Sbjct: 65 LIAC-GTSYHAGVATRQ-VLEELTELPVMVELASDFLDRNTPVF-------RDDVCFFLS 115
Query: 110 KSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTST 169
+SG T + L + K +GA V +T+ G++++ D VH+ E+ TS
Sbjct: 116 QSGETADTLMGLRYCKERGALTVGITNTVGSSISRETDCGVHINAGPEIGVASTKAYTSQ 175
Query: 170 AIQMVF 175
+ +V
Sbjct: 176 FVSLVM 181
>pdb|3FKJ|A Chain A, Crystal Structure Of A Putative Phosphosugar Isomerase
(Stm_0572) From Salmonella Typhimurium Lt2 At 2.12 A
Resolution
pdb|3FKJ|B Chain B, Crystal Structure Of A Putative Phosphosugar Isomerase
(Stm_0572) From Salmonella Typhimurium Lt2 At 2.12 A
Resolution
Length = 347
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 57 IFFTGVGKS--GFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNT 114
++F G G S GF K + + G++ + +H L + ++++ S+ GNT
Sbjct: 43 VWFVGCGGSLTGFWPGKYFLDCEASKLAVGYITSNEFVHATPKALGKNSVVILASQQGNT 102
Query: 115 EELLKVVPCAKAKGA 129
E + A+ KGA
Sbjct: 103 AETVAAARVAREKGA 117
>pdb|2YVA|A Chain A, Crystal Structure Of Escherichia Coli Diaa
pdb|2YVA|B Chain B, Crystal Structure Of Escherichia Coli Diaa
Length = 196
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 103 DILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVC---DMNVHLPVER 156
D+L+ S GN+ +++K V A + +V++T +G LA + D+ + +P R
Sbjct: 111 DVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHR 167
>pdb|1NRI|A Chain A, Crystal Structure Of Putative Phosphosugar Isomerase
Hi0754 From Haemophilus Influenzae
Length = 306
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 84 GFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALA 143
LN L ++H S +D+LV + SG T ++ + AK+ GA +S+ S + A
Sbjct: 128 AVLNDLQSIH-----FSKNDVLVGIAASGRTPYVIAGLQYAKSLGALTISIASNPKSEXA 182
Query: 144 AVCDMNVHLPVERELCPFDLAPVTSTAIQMVFG--DTVAIAMMGA--RNLTRDEYAANH 198
+ D+ + V E+ + TA + V T + ++G NL D A+N
Sbjct: 183 EIADIAIETIVGPEILTGSSRLKSGTAQKXVLNXLTTASXILLGKCYENLXVDVQASNE 241
>pdb|4FRY|A Chain A, The Structure Of A Putative Signal-Transduction Protein
With Cbs Domains From Burkholderia Ambifaria Mc40-6
pdb|4FRY|B Chain B, The Structure Of A Putative Signal-Transduction Protein
With Cbs Domains From Burkholderia Ambifaria Mc40-6
Length = 157
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 226 EGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNR 285
+ D + D + + KG G LLV+D + + G T+ D R + V E+
Sbjct: 28 KNDFVYDAIKLMAEKGIGALLVVDGD-DIAGIVTERDYARKVVLQERSSKATRVEEIMTA 86
Query: 286 SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334
R + P E M M ++ LPV++ LIG++++ LV +
Sbjct: 87 KVRYVEPSQSTDECMALM--TEHRMRHLPVLDGGK-LIGLISIGDLVKS 132
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 127 KGAYLVSVTSVEGNALAAVCDMNVHLPVE 155
G YL+ +++GNAL+ D NV P+E
Sbjct: 585 NGGYLIRSVAIKGNALSVQADFNVTTPLE 613
>pdb|3I0Z|A Chain A, Crystal Structure Of Putative Putative
Tagatose-6-Phosphate KetoseALDOSE ISOMERASE
(NP_344614.1) FROM STREPTOCOCCUS PNEUMONIAE Tigr4 At
1.70 A Resolution
pdb|3I0Z|B Chain B, Crystal Structure Of Putative Putative
Tagatose-6-Phosphate KetoseALDOSE ISOMERASE
(NP_344614.1) FROM STREPTOCOCCUS PNEUMONIAE Tigr4 At
1.70 A Resolution
Length = 389
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 28/136 (20%)
Query: 21 LDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKI-------- 72
+ ++++++ + F Q ++ H + TG G S +V + +
Sbjct: 33 FEFYQAKREEIAAFLQEIADKHDYI----------KVILTGAGTSAYVGDTLLPYFKEVY 82
Query: 73 ---SQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKA--K 127
++ NP L D+ +LV F++SGN+ E L V AK+
Sbjct: 83 DERKWNFNAIATTDIVANPATYLKKDVAT-----VLVSFARSGNSPESLATVDLAKSLVD 137
Query: 128 GAYLVSVTSVEGNALA 143
Y V++T LA
Sbjct: 138 ELYQVTITCAADGKLA 153
>pdb|3KH5|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk.
pdb|3LFZ|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk
Length = 280
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 193 EYAANH-PAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE 251
++A NH G + + +++++MK +++ KEGD + + + G L V+DE
Sbjct: 206 DWAFNHMQTGNVREITNVRMEEIMK--RDVITAKEGDKLKKIAEIMVTNDIGALPVVDEN 263
Query: 252 YHLIGTFTDGDL 263
+ G T+ D+
Sbjct: 264 LRIKGIITEKDV 275
>pdb|3ZFH|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine
5'-monophosphate Dehydrogenase
Length = 510
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRT 266
V +M P+ +L +EG + + +L +LV+DE ++L G T D+ +
Sbjct: 169 VAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKA 224
>pdb|3KPB|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 122
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 13/119 (10%)
Query: 211 VQDVM-KPQKELPVCKEGDL-IMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK 268
V+D++ KP P+ ++ IM+ L L ++DE L+G T D+ + L
Sbjct: 3 VKDILSKP----PITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALA 58
Query: 269 ASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVT 327
+ K T+ E+ R+ T D KM + +PV++ ++GIVT
Sbjct: 59 QN-----KKTIEEIMTRNVITAHEDEPVDHVAIKMSK--YNISGVPVVDDYRRVVGIVT 110
>pdb|4AVF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
Length = 490
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265
V +M P+ +L +EG + + +L +LV+DE ++L G T D+ +
Sbjct: 149 VAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEK 203
>pdb|3KPC|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 124
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 13/119 (10%)
Query: 211 VQDVM-KPQKELPVCKEGDL-IMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK 268
V+D++ KP P+ ++ IM+ L L ++DE L+G T D+ + L
Sbjct: 5 VKDILSKP----PITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALA 60
Query: 269 ASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVT 327
+ K T+ E+ R+ T D KM + +PV++ ++GIVT
Sbjct: 61 QN-----KKTIEEIMTRNVITAHEDEPVDHVAIKMSK--YNISGVPVVDDYRRVVGIVT 112
>pdb|1X92|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Phosphoheptose
Isomerase In Complex With Reaction Product D-glycero-d-
Mannopyranose-7-phosphate
pdb|1X92|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Phosphoheptose
Isomerase In Complex With Reaction Product D-glycero-d-
Mannopyranose-7-phosphate
Length = 199
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 103 DILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVC---DMNVHLP 153
D+L+ S SGN+ +++ + A + +V++T +G +A++ D+ + +P
Sbjct: 115 DVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVP 168
>pdb|3TRJ|A Chain A, Structure Of A Phosphoheptose Isomerase From Francisella
Tularensis
pdb|3TRJ|B Chain B, Structure Of A Phosphoheptose Isomerase From Francisella
Tularensis
pdb|3TRJ|C Chain C, Structure Of A Phosphoheptose Isomerase From Francisella
Tularensis
pdb|3TRJ|D Chain D, Structure Of A Phosphoheptose Isomerase From Francisella
Tularensis
Length = 201
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 21/115 (18%)
Query: 49 TLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSS------- 101
+ L+ G + G G SG +A + L++ P AL GD+ +++
Sbjct: 41 SCLENGGKVLVCGNGSSGVIAQHFTSKLLNHFEXERPPLPAIALTGDVATITAVGNHYGF 100
Query: 102 --------------DDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNAL 142
DDIL++ + SG++E +L V A ++++T G AL
Sbjct: 101 SQIFAKQVAALGNEDDILLVITTSGDSENILSAVEEAHDLEXKVIALTGGSGGAL 155
>pdb|2WAE|A Chain A, Penicillin-Binding Protein 2b (Pbp-2b) From Streptococcus
Pneumoniae (Strain 5204)
Length = 680
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 202 RIGKSLIFK-VQDVM---KPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYH---- 253
R+G S + K ++V+ +P KE+ + K GD+ + +E SKG L ID +
Sbjct: 262 RVGTSYLEKQYEEVLQGKRPVKEIHLDKHGDMESVENIEEGSKGKNIKLTIDLAFQDSVD 321
Query: 254 -LIGTFTDGDLRRTLKASGEGIFKLTV 279
L+ ++ + +L EG++ + +
Sbjct: 322 ALLKSYFNSELGNGGAKYSEGVYAVAL 348
>pdb|2WAD|A Chain A, Penicillin-Binding Protein 2b (Pbp-2b) From Streptococcus
Pneumoniae (Strain 5204)
pdb|2WAD|B Chain B, Penicillin-Binding Protein 2b (Pbp-2b) From Streptococcus
Pneumoniae (Strain 5204)
pdb|2WAD|C Chain C, Penicillin-Binding Protein 2b (Pbp-2b) From Streptococcus
Pneumoniae (Strain 5204)
Length = 680
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 202 RIGKSLIFK-VQDVM---KPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYH---- 253
R+G S + K ++V+ +P KE+ + K GD+ + +E SKG L ID +
Sbjct: 262 RVGTSYLEKQYEEVLQGKRPVKEIHLDKHGDMESVENIEEGSKGKNIKLTIDLAFQDSVD 321
Query: 254 -LIGTFTDGDLRRTLKASGEGIFKLTV 279
L+ ++ + +L EG++ + +
Sbjct: 322 ALLKSYFNSELGNGGAKYSEGVYAVAL 348
>pdb|3BJZ|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Phosphoheptose
Isomerase
pdb|3BJZ|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Phosphoheptose
Isomerase
pdb|3BJZ|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa Phosphoheptose
Isomerase
pdb|3BJZ|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa Phosphoheptose
Isomerase
Length = 199
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 103 DILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVC---DMNVHLP 153
D+L+ S SGN+ +++ + A + +V++T +G A++ D+ + +P
Sbjct: 115 DVLLAISTSGNSANVIQAIQAAHDREXLVVALTGRDGGGXASLLLPEDVEIRVP 168
>pdb|3EUA|A Chain A, Crystal Structure Of A Putative Phosphosugar Isomerase
(Bsu32610) From Bacillus Subtilis At 1.90 A Resolution
pdb|3EUA|B Chain B, Crystal Structure Of A Putative Phosphosugar Isomerase
(Bsu32610) From Bacillus Subtilis At 1.90 A Resolution
pdb|3EUA|C Chain C, Crystal Structure Of A Putative Phosphosugar Isomerase
(Bsu32610) From Bacillus Subtilis At 1.90 A Resolution
pdb|3EUA|D Chain D, Crystal Structure Of A Putative Phosphosugar Isomerase
(Bsu32610) From Bacillus Subtilis At 1.90 A Resolution
pdb|3EUA|E Chain E, Crystal Structure Of A Putative Phosphosugar Isomerase
(Bsu32610) From Bacillus Subtilis At 1.90 A Resolution
pdb|3EUA|F Chain F, Crystal Structure Of A Putative Phosphosugar Isomerase
(Bsu32610) From Bacillus Subtilis At 1.90 A Resolution
pdb|3EUA|G Chain G, Crystal Structure Of A Putative Phosphosugar Isomerase
(Bsu32610) From Bacillus Subtilis At 1.90 A Resolution
pdb|3EUA|H Chain H, Crystal Structure Of A Putative Phosphosugar Isomerase
(Bsu32610) From Bacillus Subtilis At 1.90 A Resolution
Length = 329
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 99 LSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVT 135
L ++++ S SGNT E +K A+ KGA ++ T
Sbjct: 72 LGEKSLVILCSHSGNTPETVKAAAFARGKGALTIAXT 108
>pdb|1XKF|A Chain A, Crystal Structure Of Hypoxic Response Protein I (Hrpi)
With Two Coordinated Zinc Ions
pdb|1XKF|B Chain B, Crystal Structure Of Hypoxic Response Protein I (Hrpi)
With Two Coordinated Zinc Ions
Length = 133
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 243 GCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQK 302
G L + ++ L G TD D+ A+G T GE+ S + +A E +
Sbjct: 40 GALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIYYVDANASIQEMLNV 99
Query: 303 MESPPSPVQFLPVINRQNILIGIVT 327
ME V+ +PVI+ L+GIVT
Sbjct: 100 MEE--HQVRRVPVISEHR-LVGIVT 121
>pdb|3IWT|A Chain A, Structure Of Hypothetical Molybdenum Cofactor Biosynthesis
Protein B From Sulfolobus Tokodaii
pdb|3IWT|B Chain B, Structure Of Hypothetical Molybdenum Cofactor Biosynthesis
Protein B From Sulfolobus Tokodaii
pdb|3IWT|C Chain C, Structure Of Hypothetical Molybdenum Cofactor Biosynthesis
Protein B From Sulfolobus Tokodaii
Length = 178
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 218 QKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDG 261
+KE V + GD+I L+E K G LV D++ ++ FTD
Sbjct: 33 KKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDA 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,423,695
Number of Sequences: 62578
Number of extensions: 383135
Number of successful extensions: 908
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 866
Number of HSP's gapped (non-prelim): 61
length of query: 336
length of database: 14,973,337
effective HSP length: 99
effective length of query: 237
effective length of database: 8,778,115
effective search space: 2080413255
effective search space used: 2080413255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)