BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019775
(336 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M1T1|SETH3_ARATH Probable arabinose 5-phosphate isomerase OS=Arabidopsis thaliana
GN=SETH3 PE=2 SV=1
Length = 350
Score = 522 bits (1344), Expect = e-147, Method: Compositional matrix adjust.
Identities = 254/324 (78%), Positives = 289/324 (89%)
Query: 13 HKVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKI 72
++S + LL+LFKSQQD LN+FF+HL L TL F++ LL GT+FFTGVGKS FVANK+
Sbjct: 27 QEISHDNLLNLFKSQQDLLNHFFKHLDLSQTLDFSRILLSTTGTVFFTGVGKSAFVANKV 86
Query: 73 SQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLV 132
SQTL+SL +S FL+PLDALHGDIG LS D+LV FSKSG TEELL++VPCA+AKGA+LV
Sbjct: 87 SQTLVSLSFRSSFLSPLDALHGDIGALSPRDVLVFFSKSGATEELLRLVPCARAKGAFLV 146
Query: 133 SVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRD 192
S+TSV GN LA VCDMNVHLP++RELCPF+LAPVTSTAIQMVFGDT+A+A+M ARNL+++
Sbjct: 147 SLTSVSGNPLAGVCDMNVHLPLQRELCPFNLAPVTSTAIQMVFGDTIAVALMAARNLSKE 206
Query: 193 EYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEY 252
EYAANHPAGRIGKSLIFKV+DVMK Q+ELPVCKEGDLIMDQLVELTSKGCGCLLV+DE
Sbjct: 207 EYAANHPAGRIGKSLIFKVKDVMKKQEELPVCKEGDLIMDQLVELTSKGCGCLLVVDEHS 266
Query: 253 HLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQF 312
LIGTFTDGDLRRTLKASGE IFKL+VGEMCNR PRTIGP+ MAVEAM+KMESPPSPVQF
Sbjct: 267 RLIGTFTDGDLRRTLKASGEAIFKLSVGEMCNRKPRTIGPETMAVEAMKKMESPPSPVQF 326
Query: 313 LPVINRQNILIGIVTLHGLVSAGL 336
LPV+N N LIGIVTLHGLVSAGL
Sbjct: 327 LPVVNEDNTLIGIVTLHGLVSAGL 350
>sp|Q9Z826|Y526_CHLPN Uncharacterized protein CPn_0526/CP_0226/CPj0526/CpB0547
OS=Chlamydia pneumoniae GN=CPn_0526 PE=3 SV=1
Length = 329
Score = 248 bits (632), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 131/324 (40%), Positives = 202/324 (62%), Gaps = 3/324 (0%)
Query: 15 VSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQ 74
+S + D+ Q++ +++FFQ + + +L G +FF+GVGKSG VA K+
Sbjct: 6 ISTDVCQDILGKQKEAVDFFFQAFQPKEAMQLAEKILGHSGWVFFSGVGKSGCVARKLVA 65
Query: 75 TLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSV 134
TL SL ++ F +P+D LHGD+G++S DI+ +FSKSG T+ELL VP K++ A LV++
Sbjct: 66 TLQSLSERALFFSPVDLLHGDLGLVSPGDIVCLFSKSGETQELLDTVPHLKSRRAILVAI 125
Query: 135 TSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEY 194
TS+ + LAA+ D+ V LP EL PF+L P ST QM+FGD +A+ + +R ++ Y
Sbjct: 126 TSMPYSNLAALSDLVVILPSVAELDPFNLIPTNSTTCQMIFGDFLAMLLFHSRGVSLSTY 185
Query: 195 AANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHL 254
NHP+G++G KV+D M P+ E+P C GD + L ++ GCGC+ ++D ++ L
Sbjct: 186 GKNHPSGQVGMKANGKVKDFMFPKTEVPFCHLGDKVSFSLEVFSAYGCGCVCIVDPQFRL 245
Query: 255 IGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLP 314
+G FTDGDLRR+L + G + L++ ++ +PR I D+ A+Q MES SPV LP
Sbjct: 246 MGIFTDGDLRRSLASYGGEVLSLSLEKVMTANPRCITEDSDIAIALQLMES-SSPVAVLP 304
Query: 315 VI-NRQNI-LIGIVTLHGLVSAGL 336
V+ N +N + G++ +H L AGL
Sbjct: 305 VLDNEENRHVTGLLHMHTLAKAGL 328
>sp|Q9PJZ7|Y679_CHLMU Uncharacterized protein TC_0679 OS=Chlamydia muridarum (strain MoPn
/ Nigg) GN=TC_0679 PE=3 SV=1
Length = 328
Score = 234 bits (597), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 123/324 (37%), Positives = 196/324 (60%), Gaps = 4/324 (1%)
Query: 15 VSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQ 74
V+E+ LD+F Q+ ++ +F + T+ LL +G +FF+G+GKSG +A K+
Sbjct: 6 VAEDLCLDIFHKQKQVISRYFANFHCDVVRQLTERLLCHQGAVFFSGIGKSGCIARKLVA 65
Query: 75 TLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSV 134
T+ S G K+ FL+ D LHGD+G++SS DI+ +FS SG T E+L+ +P K + +LV +
Sbjct: 66 TMQSFGEKAFFLSG-DLLHGDLGVVSSGDIVCLFSNSGETREILEWIPHLKNRQVFLVGI 124
Query: 135 TSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEY 194
TS ++LA D V LP EL PF+L P TST Q++F D +A+ ++ R ++ +Y
Sbjct: 125 TSSPCSSLAVFSDFVVMLPKLEELDPFNLIPTTSTTCQLLFSDLLAMTVLRCRKISLSDY 184
Query: 195 AANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHL 254
NHP+G+IG KV+D + P+ E+P C + + L L+S G GC+ V++E++ L
Sbjct: 185 GKNHPSGQIGLKANGKVRDYLSPRTEVPFCSPSITVSEALTVLSSYGYGCVCVVNEQFEL 244
Query: 255 IGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLP 314
+G FTDGDLRR L G I + + ++ R P+ I D+ + ++ MES +PV LP
Sbjct: 245 LGIFTDGDLRRGLSECGGAILECPLEQVMTRKPKVISEDSDVLLGLEMMES-GNPVTVLP 303
Query: 315 VIN--RQNILIGIVTLHGLVSAGL 336
V++ Q ++G++ +H L AGL
Sbjct: 304 VVDAQHQRFIVGLLHMHTLARAGL 327
>sp|O84404|Y399_CHLTR Uncharacterized protein CT_399 OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=CT_399 PE=3 SV=1
Length = 328
Score = 233 bits (593), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 121/324 (37%), Positives = 198/324 (61%), Gaps = 4/324 (1%)
Query: 15 VSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQ 74
++EN LD+F Q+ ++ +F T+ LL +G++FF+G+GKSG +A K+
Sbjct: 6 IAENLCLDIFHKQKQVISQYFASFHYDCVHQLTEKLLCHQGSLFFSGIGKSGCIARKLVA 65
Query: 75 TLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSV 134
T+ S G K+ FL+ D LHGD+G++S DI+ +FS SG T E+L+ +P K + +LV +
Sbjct: 66 TMQSFGEKAFFLSG-DLLHGDLGVVSPGDIVCLFSNSGETREILEWIPHLKNRPVFLVGI 124
Query: 135 TSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEY 194
T+ ++LAA D + LP EL PF+L P TST Q++F D +A+ ++ R ++ +Y
Sbjct: 125 TAAPCSSLAAFSDFVIVLPKLEELDPFNLMPTTSTTCQLLFSDLLAMTLLRCRKISLSDY 184
Query: 195 AANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHL 254
+NHP+G+IG KV+D + P+ E+P C + + L L+S G GC+ V++E + L
Sbjct: 185 GSNHPSGQIGLKANGKVKDYLYPRTEVPFCSPLTTVAESLPTLSSYGYGCVCVVNELFEL 244
Query: 255 IGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLP 314
+G FTDGDLRR L G I + ++ R+P+ I D+ + +++ MES +PV LP
Sbjct: 245 LGIFTDGDLRRGLSEYGGDILAYPLQQIMTRNPKVISEDSDVLLSLEMMES-GNPVTVLP 303
Query: 315 VIN--RQNILIGIVTLHGLVSAGL 336
V++ +Q ++G++ +H L AGL
Sbjct: 304 VVDAQQQRFIVGLLHMHALARAGL 327
>sp|O67500|Y1546_AQUAE Uncharacterized phosphosugar isomerase aq_1546 OS=Aquifex aeolicus
(strain VF5) GN=aq_1546 PE=3 SV=1
Length = 322
Score = 219 bits (559), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/290 (38%), Positives = 182/290 (62%), Gaps = 6/290 (2%)
Query: 48 QTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVM 107
+ L C G + TG+GKSG +A KIS TL S G S FL+P +ALHGD+G+L S D L+
Sbjct: 37 EILRNCEGKVILTGIGKSGHIARKISSTLSSTGTPSVFLHPAEALHGDMGLLDSKDALIA 96
Query: 108 FSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVT 167
S SG + E+L V+ AKA ++ +T E ++LA D+ + +PV+RE CPF+LAP
Sbjct: 97 ISNSGESTEVLYVLQYAKALNIPVIGITGNEKSSLAKYSDVVLKIPVDREACPFNLAPTV 156
Query: 168 STAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEG 227
S+ + + GD +A+ +M + +++++A HPAG +G+ L V+D+ +E+P+ KE
Sbjct: 157 SSTVTLALGDAIAMTLMKLKGFSQEDFAKRHPAGALGRKLRL-VKDLYHTGEEVPIVKED 215
Query: 228 DLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLT-VGEMCNRS 286
+ + ++E+T+KG G V++EE L+G TDGDLRR + G F+ T ++ ++
Sbjct: 216 TSMKEAIIEMTAKGFGATAVVNEEGKLVGIITDGDLRRFVNRGGS--FENTRAKDVMTKN 273
Query: 287 PRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL 336
P+TI PD +A++A++KME + L V+N +N IGI+ +H ++ A L
Sbjct: 274 PKTIKPDELALKALRKMED--HNITVLIVVNEENEPIGILHMHDILKAEL 321
>sp|Q9HVW0|KDSD_PSEAE Arabinose 5-phosphate isomerase KdsD OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=kdsD PE=1 SV=1
Length = 326
Score = 197 bits (502), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 106/289 (36%), Positives = 176/289 (60%), Gaps = 3/289 (1%)
Query: 48 QTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVM 107
+ LL +G + G+GKSG V KI+ TL S G S F++P +A HGD+G+++ DD+++
Sbjct: 40 ELLLAGKGRVVVVGMGKSGHVGKKIAATLASTGTPSFFVHPAEASHGDMGMITKDDVVLA 99
Query: 108 FSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVT 167
S SG+T E++ ++P K G L+S+T + LA ++N+ V +E CP +LAP +
Sbjct: 100 LSNSGSTAEIVTLLPLIKRLGITLISMTGNPESPLAKAAEVNLDASVGQEACPLNLAPTS 159
Query: 168 STAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEG 227
ST + +V GD +AIA++ AR T +++A +HP G +G+ L+ KV+DVM + LP G
Sbjct: 160 STTVTLVLGDALAIALLEARGFTAEDFAFSHPGGALGRRLLLKVEDVMHVGEGLPQVLLG 219
Query: 228 DLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSP 287
+ L+E+T KG G +V+DE L G FTDGDLRR L G + ++T+ ++
Sbjct: 220 TSLTGALMEMTRKGLGMTVVLDEHGKLAGIFTDGDLRRALD-RGIDVRQVTIDQVMTVHG 278
Query: 288 RTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL 336
+T+ + +A EA++ ME + + L V++ + +G + +H L+ AG+
Sbjct: 279 KTVRAEILAAEALKIMED--NKIGALVVVDADDRPVGALNMHDLLRAGV 325
>sp|Q5NGP7|KDSD_FRATT Arabinose 5-phosphate isomerase KdsD OS=Francisella tularensis
subsp. tularensis (strain SCHU S4 / Schu 4) GN=kdsD PE=1
SV=1
Length = 327
Score = 194 bits (494), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 97/281 (34%), Positives = 174/281 (61%), Gaps = 4/281 (1%)
Query: 52 KCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKS 111
+ + + TG+GKSG + K++ T S G + F++P +A HGD G+++ +D+L+ S S
Sbjct: 46 RDKSRVIITGMGKSGHIGKKMAATFASTGTPAFFVHPGEAGHGDFGMITKNDVLIAISNS 105
Query: 112 GNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAI 171
G + E++ ++P K ++++TS + LA ++ ++L V++E CP +LAP +ST
Sbjct: 106 GTSSEIMGLLPMIKHLDIPIIAITSNPKSILARNSNVTLNLHVDKEACPLNLAPTSSTTA 165
Query: 172 QMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIM 231
+V GD +AIA++ A+N + ++A +HP G +G+ LI KV+++M+ E+P+ K D I
Sbjct: 166 TLVLGDALAIALLKAKNFSEKDFAFSHPNGALGRKLILKVENIMRKGNEIPIVKPTDNIR 225
Query: 232 DQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIG 291
++E++ KG G LV E L+G FTDGDLRR +A + + E+ ++P++I
Sbjct: 226 KAILEISDKGVGNTLVA-ENNTLLGIFTDGDLRRMFEAESFN-SQRAISEVMTKNPKSIS 283
Query: 292 PDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLV 332
+ MA+ A++KME + L V++ + ++GIVT+H L+
Sbjct: 284 KEEMAITALEKMEK--YEITSLAVVDNGHNILGIVTMHDLI 322
>sp|Q8FDQ2|KPSF_ECOL6 Arabinose 5-phosphate isomerase KpsF OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=kpsF PE=1 SV=2
Length = 327
Score = 190 bits (482), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/280 (37%), Positives = 164/280 (58%), Gaps = 7/280 (2%)
Query: 50 LLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFS 109
++ C+G + +G+GKSG V KIS TL S G S F++P +A HGD+G+++ D+L++ S
Sbjct: 52 IMNCKGHVILSGMGKSGHVGRKISATLASTGTPSFFIHPAEAFHGDLGMITPYDLLILIS 111
Query: 110 KSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTST 169
SG T+E+LK+VP K G ++++T+ + LA D + L + E CP +LAP TST
Sbjct: 112 ASGETDEILKLVPSLKNFGNRIIAITNNGNSTLAKNADAVLELHMANETCPNNLAPTTST 171
Query: 170 AIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDL 229
+ M GD +AIAM+ R +++A HP G +G+ L+ +V DVM Q ++P + D
Sbjct: 172 TLTMAIGDALAIAMIHQRKFMPNDFARYHPGGSLGRRLLTRVADVM--QHDVPAVQL-DA 228
Query: 230 IMDQLVELTSKGC-GCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPR 288
+++ + GC G ++V D E L G TDGDLRR ++ G + T +M R P
Sbjct: 229 SFKTVIQRITSGCQGMVMVEDAEGGLAGIITDGDLRRFMEKEGS-LTSATAAQMMTREPL 287
Query: 289 TIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTL 328
T+ D M +EA +KM+ V L V N+ N + G+V +
Sbjct: 288 TLPEDTMIIEAEEKMQK--HRVSTLLVTNKANKVTGLVRI 325
>sp|Q47334|KPSF5_ECOLX Arabinose 5-phosphate isomerase KpsF OS=Escherichia coli GN=kpsF
PE=3 SV=1
Length = 327
Score = 187 bits (474), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/280 (36%), Positives = 164/280 (58%), Gaps = 7/280 (2%)
Query: 50 LLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFS 109
++ C+G + +G+GKSG V K+S TL S G S F++P +A HGD+G+++ D+L++ S
Sbjct: 52 IMNCKGHVILSGMGKSGHVGRKMSATLASTGTPSFFIHPAEAFHGDLGMITPYDLLILIS 111
Query: 110 KSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTST 169
SG T+E+LK+VP K G ++++T+ + LA D + L + E CP +LAP TST
Sbjct: 112 ASGETDEILKLVPSLKNFGNRIIAITNNGNSTLAKNADAVLELHMANETCPNNLAPTTST 171
Query: 170 AIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDL 229
+ M GD +AIAM+ R +++A HP G +G+ L+ +V DVM Q ++P + D
Sbjct: 172 TLTMAIGDALAIAMIHQRKFMPNDFARYHPGGSLGRRLLTRVADVM--QHDVPAVQL-DA 228
Query: 230 IMDQLVELTSKGC-GCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPR 288
+++ + GC G ++V D E L G TDGDLRR ++ + + T +M R P
Sbjct: 229 SFKTVIQRITSGCQGMVMVEDAEGGLAGIITDGDLRRFMEKE-DSLTSATAAQMMTREPL 287
Query: 289 TIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTL 328
T+ D M +EA +KM+ V L V N+ N + G+V +
Sbjct: 288 TLPEDTMIIEAEEKMQK--HRVSTLLVTNKANKVTGLVRI 325
>sp|P42502|KPSF1_ECOLX Arabinose 5-phosphate isomerase KpsF OS=Escherichia coli GN=kpsF
PE=3 SV=1
Length = 317
Score = 181 bits (459), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 153/256 (59%), Gaps = 5/256 (1%)
Query: 50 LLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFS 109
++ C+G + +G+GKSG V K+S TL S G S F++P +A HGD+G+++ D+L++ S
Sbjct: 52 IMNCKGHVILSGMGKSGHVGRKMSATLASTGTPSFFIHPAEAFHGDLGMITPYDLLILIS 111
Query: 110 KSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTST 169
SG T+E+LK+VP K G ++++T+ + LA D + L + E CP +LAP TST
Sbjct: 112 ASGETDEILKLVPSLKNFGNRIIAITNNGNSTLAKNADAVLELHMANETCPNNLAPTTST 171
Query: 170 AIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDL 229
+ M GD +AIAM+ R +++A HP G +G+ L+ +V DVM Q ++P + D
Sbjct: 172 TLTMAIGDALAIAMIRQRKFMPNDFARYHPGGSLGRRLLTRVADVM--QHDVPAVQL-DA 228
Query: 230 IMDQLVELTSKGC-GCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPR 288
+++ + GC G ++V D E L G TDGDLRR ++ + + T +M R P
Sbjct: 229 SFKTVIQRITSGCQGMVMVEDAEGGLAGIITDGDLRRFMEKE-DSLTSATAAQMMTREPL 287
Query: 289 TIGPDAMAVEAMQKME 304
T+ D M +EA +KM+
Sbjct: 288 TLPEDTMIIEAEEKMQ 303
>sp|Q8ZLS1|KDSD_SALTY Arabinose 5-phosphate isomerase KdsD OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=kdsD PE=3 SV=1
Length = 328
Score = 178 bits (452), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 169/305 (55%), Gaps = 9/305 (2%)
Query: 32 NYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDA 91
Y QH +L + + C G + G+GKSG + K++ T S G S F++P +A
Sbjct: 32 QYINQHFTLA-----CEKMFNCTGKVVVMGMGKSGHIGRKMAATFASTGTSSFFVHPGEA 86
Query: 92 LHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVH 151
HGD+G+++ D+++ S SG + E+ ++P K L+ +T +++A D+++
Sbjct: 87 AHGDLGMVTPQDVVIAISNSGESSEIAALIPVLKRLHVPLICITGRPESSMARAADVHLC 146
Query: 152 LPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKV 211
+ V +E CP LAP +ST +V GD +A+A++ AR T +++A +HP G +G+ L+ +V
Sbjct: 147 VKVPKEACPLGLAPTSSTTATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRV 206
Query: 212 QDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASG 271
D+M E+P + + D L+E+T K G ++ DE + G FTDGDLRR G
Sbjct: 207 SDIMHTGDEIPHVNKHATLRDALLEITRKNLGMTVICDESMKIDGIFTDGDLRRVFDMGG 266
Query: 272 EGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGL 331
+ + +L + E+ + P +AV+A+ M+S + + V + L+G++ +H L
Sbjct: 267 D-MRQLGIAEVMTPGGIRVRPGILAVDALNLMQS--RHITSVLVADGDQ-LLGVLHMHDL 322
Query: 332 VSAGL 336
+ AG+
Sbjct: 323 LRAGV 327
>sp|Q8Z3G6|KDSD_SALTI Arabinose 5-phosphate isomerase KdsD OS=Salmonella typhi GN=kdsD
PE=3 SV=1
Length = 328
Score = 178 bits (451), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 169/305 (55%), Gaps = 9/305 (2%)
Query: 32 NYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDA 91
Y QH +L + + C G + G+GKSG + K++ T S G S F++P +A
Sbjct: 32 QYINQHFTLA-----CEKMFNCTGKVVVMGMGKSGHIGRKMAATFASTGTSSFFVHPGEA 86
Query: 92 LHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVH 151
HGD+G+++ D+++ S SG + E+ ++P K L+ +T +++A D+++
Sbjct: 87 AHGDLGMVTPQDVVIAISNSGESSEIAALIPVLKRLHVPLICITGRPESSMARAADVHLC 146
Query: 152 LPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKV 211
+ V +E CP LAP +ST +V GD +A+A++ AR T +++A +HP G +G+ L+ +V
Sbjct: 147 VKVPKEACPLGLAPTSSTTATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRV 206
Query: 212 QDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASG 271
D+M E+P + + D L+E+T K G ++ DE + G FTDGDLRR G
Sbjct: 207 SDIMHTGDEIPHVNKHATLRDALLEITRKNLGMTVICDESMKIDGIFTDGDLRRMFDMGG 266
Query: 272 EGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGL 331
+ + +L + E+ + P +AV+A+ M+S + + V + L+G++ +H L
Sbjct: 267 D-MRQLGIAEVMTPGGIRVRPGILAVDALNLMQS--RHITSVLVADGDQ-LLGVLHMHDL 322
Query: 332 VSAGL 336
+ AG+
Sbjct: 323 LRAGV 327
>sp|P45313|API_HAEIN Probable arabinose 5-phosphate isomerase OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1678
PE=3 SV=1
Length = 337
Score = 178 bits (451), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 100/277 (36%), Positives = 155/277 (55%), Gaps = 5/277 (1%)
Query: 50 LLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFS 109
+L C G + G+GKSG + K+ T S G S FL+P +A HGD+G+L DI+++ S
Sbjct: 62 ILACEGRLVIGGIGKSGLIGKKMVATFASTGTPSFFLHPTEAFHGDLGMLKPIDIVMLIS 121
Query: 110 KSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTST 169
SG T+++ K++P K G +++VTS + + LA D + + VERE+CP +LAP TS
Sbjct: 122 YSGETDDVNKLIPSLKNFGNKIIAVTSNKNSTLARHADYVLDITVEREVCPNNLAPTTSA 181
Query: 170 AIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDL 229
+ + GD +A++++ ARN ++A HP G +G+ L+ KV+D M Q LP
Sbjct: 182 LVTLALGDALAVSLITARNFQPADFAKFHPGGSLGRRLLCKVKDQM--QTRLPTILPTTN 239
Query: 230 IMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRT 289
D L + G LV++ E L G TDGD+RR L A+G G T + SP+T
Sbjct: 240 FTDCLTVMNEGRMGVALVMENE-QLKGIITDGDIRRALTANGAGTLNKTAKDFMTSSPKT 298
Query: 290 IGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIV 326
I D +A M++ + L V+N +N ++G+V
Sbjct: 299 IHQDEFLSKAEDFMKA--KKIHSLVVVNDENHVVGLV 333
>sp|Q8D1Q8|KDSD_YERPE Arabinose 5-phosphate isomerase KdsD OS=Yersinia pestis GN=kdsD
PE=3 SV=2
Length = 328
Score = 177 bits (450), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 165/289 (57%), Gaps = 4/289 (1%)
Query: 48 QTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVM 107
+ + +C G + G+GKSG + KI+ T S G + F++P +A HGD+G+++ DI++
Sbjct: 43 EAIFRCHGKVVVMGMGKSGHIGCKIAATFASTGTPAFFVHPGEASHGDLGMITPQDIVLA 102
Query: 108 FSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVT 167
S SG + E+L ++P K + L+ ++S + + D+++ + V +E CP LAP T
Sbjct: 103 ISNSGESNEILTLIPVLKRQKILLICMSSNPESTMGKAADIHLCINVPQEACPLGLAPTT 162
Query: 168 STAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEG 227
ST +V GD +A+A++ AR T++++A +HP G +G+ L+ ++ D+M E+P
Sbjct: 163 STTATLVMGDALAVALLKARGFTQEDFALSHPGGALGRKLLLRISDIMHTGTEIPTVSPD 222
Query: 228 DLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSP 287
+ D L+E+T K G ++ D+ + G FTDGDLRR G + + ++ R
Sbjct: 223 ASLRDALLEITRKSLGLTVICDDSMRIKGIFTDGDLRRVFDM-GIDLNNAKIADVMTRGG 281
Query: 288 RTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL 336
+ P+ +AV+A+ MES + L V + L+G+V +H ++ AG+
Sbjct: 282 IRVPPNILAVDALNLMES--RHITALLVADGDQ-LLGVVHMHDMLRAGV 327
>sp|Q8FD73|KDSD_ECOL6 Arabinose 5-phosphate isomerase KdsD OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=kdsD PE=3 SV=2
Length = 328
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 179/315 (56%), Gaps = 5/315 (1%)
Query: 22 DLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGI 81
++ +++ L Q+++ TL + + C+G + G+GKSG + K++ T S G
Sbjct: 18 EVLAIERECLAELDQYINQNFTLA-CEKMFWCKGKVVVMGMGKSGHIGRKMAATFASTGT 76
Query: 82 KSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNA 141
S F++P +A HGD+G+++ D+++ S SG + E+ ++P K L+ +T ++
Sbjct: 77 PSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGCPESS 136
Query: 142 LAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAG 201
+A D+++ + V +E CP LAP +ST +V GD +A+A++ AR T +++A +HP G
Sbjct: 137 MARAADVHLCVKVAKEACPLGLAPTSSTTATLVMGDALAVALLKARGFTAEDFALSHPGG 196
Query: 202 RIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDG 261
+G+ L+ +V D+M E+P K+ + D L+E+T K G ++ D+ + G FTDG
Sbjct: 197 ALGRKLLLRVNDIMHTGDEIPHVKKTASLRDALLEVTRKNLGMTVICDDNMMIEGIFTDG 256
Query: 262 DLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNI 321
DLRR G + +L++ ++ + P +AVEA+ M+S + + V + +
Sbjct: 257 DLRRVFDM-GVDVRRLSIADVMTPGGIRVRPGILAVEALNLMQS--RHITSVMVADGDH- 312
Query: 322 LIGIVTLHGLVSAGL 336
L+G++ +H L+ AG+
Sbjct: 313 LLGVLHMHDLLRAGV 327
>sp|Q83JF4|KDSD_SHIFL Arabinose 5-phosphate isomerase KdsD OS=Shigella flexneri GN=kdsD
PE=3 SV=2
Length = 328
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/305 (30%), Positives = 172/305 (56%), Gaps = 9/305 (2%)
Query: 32 NYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDA 91
Y Q+ +L + + C+G + G+GKSG + K++ T S G S F++P +A
Sbjct: 32 QYINQNFTLA-----CEKMFWCKGKVVVMGMGKSGHIGRKMAATFASTGTPSFFVHPSEA 86
Query: 92 LHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVH 151
HGD+G+++ D+++ S SG + E+ ++P K L+ +T +++A D+++
Sbjct: 87 AHGDLGMVTPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLC 146
Query: 152 LPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKV 211
+ V +E CP LAP +ST +V GD +A+A++ AR T +++A +HP G +G+ L+ +V
Sbjct: 147 VKVAKEACPLGLAPTSSTTATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRV 206
Query: 212 QDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASG 271
D+M E+P K+ + D L+E+T K G ++ D+ + G FTDGDLRR G
Sbjct: 207 NDIMHTGDEIPHVKKTASLRDALLEVTRKNLGMTVICDDNMMIEGIFTDGDLRRVFDM-G 265
Query: 272 EGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGL 331
+ +L++ ++ + P +AVEA+ M+S + + V + + L+G++ +H L
Sbjct: 266 VDVRQLSIADVMTPGGIRVRPGILAVEALNLMQS--RHITSVMVADGDH-LLGVLHMHDL 322
Query: 332 VSAGL 336
+ AG+
Sbjct: 323 LRAGV 327
>sp|P45395|KDSD_ECOLI Arabinose 5-phosphate isomerase KdsD OS=Escherichia coli (strain
K12) GN=kdsD PE=1 SV=1
Length = 328
Score = 175 bits (444), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 179/315 (56%), Gaps = 5/315 (1%)
Query: 22 DLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGI 81
++ +++ L Q+++ TL + + C+G + G+GKSG + K++ T S G
Sbjct: 18 EVLAIERECLAELDQYINQNFTLA-CEKMFWCKGKVVVMGMGKSGHIGRKMAATFASTGT 76
Query: 82 KSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNA 141
S F++P +A HGD+G+++ D+++ S SG + E+ ++P K L+ +T ++
Sbjct: 77 PSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPESS 136
Query: 142 LAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAG 201
+A D+++ + V +E CP LAP +ST +V GD +A+A++ AR T +++A +HP G
Sbjct: 137 MARAADVHLCVKVAKEACPLGLAPTSSTTATLVMGDALAVALLKARGFTAEDFALSHPGG 196
Query: 202 RIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDG 261
+G+ L+ +V D+M E+P K+ + D L+E+T K G ++ D+ + G FTDG
Sbjct: 197 ALGRKLLLRVNDIMHTGDEIPHVKKTASLRDALLEVTRKNLGMTVICDDNMMIEGIFTDG 256
Query: 262 DLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNI 321
DLRR G + +L++ ++ + P +AVEA+ M+S + + V + +
Sbjct: 257 DLRRVFDM-GVDVRQLSIADVMTPGGIRVRPGILAVEALNLMQS--RHITSVMVADGDH- 312
Query: 322 LIGIVTLHGLVSAGL 336
L+G++ +H L+ AG+
Sbjct: 313 LLGVLHMHDLLRAGV 327
>sp|Q8X9J0|KDSD_ECO57 Arabinose 5-phosphate isomerase KdsD OS=Escherichia coli O157:H7
GN=kdsD PE=3 SV=1
Length = 328
Score = 175 bits (444), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 179/315 (56%), Gaps = 5/315 (1%)
Query: 22 DLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGI 81
++ +++ L Q+++ TL + + C+G + G+GKSG + K++ T S G
Sbjct: 18 EVLAIERECLAELDQYINQNFTLA-CEKMFWCKGKVVVMGMGKSGHIGRKMAATFASTGT 76
Query: 82 KSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNA 141
S F++P +A HGD+G+++ D+++ S SG + E+ ++P K L+ +T ++
Sbjct: 77 PSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEITALIPVLKRLHIPLICITGRPESS 136
Query: 142 LAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAG 201
+A D+++ + V +E CP LAP +ST +V GD +A+A++ AR T +++A +HP G
Sbjct: 137 MARAADVHLCVKVAKEACPLGLAPTSSTTATLVMGDALAVALLKARGFTAEDFALSHPGG 196
Query: 202 RIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDG 261
+G+ L+ +V D+M E+P K+ + D L+E+T K G ++ D+ + G FTDG
Sbjct: 197 ALGRKLLLRVNDIMHTGDEIPHVKKTASLRDALLEVTRKNLGMTVICDDNMMIEGIFTDG 256
Query: 262 DLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNI 321
DLRR G + +L++ ++ + P +AVEA+ M+S + + V + +
Sbjct: 257 DLRRVFDM-GVDVRQLSIADVMTPGGIRVRPGILAVEALNLMQS--RHITSVMVADGDH- 312
Query: 322 LIGIVTLHGLVSAGL 336
L+G++ +H L+ AG+
Sbjct: 313 LLGVLHMHDLLRAGV 327
>sp|Q83MK2|GUTQ_SHIFL Arabinose 5-phosphate isomerase GutQ OS=Shigella flexneri GN=gutQ
PE=3 SV=5
Length = 321
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/287 (33%), Positives = 154/287 (53%), Gaps = 4/287 (1%)
Query: 50 LLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFS 109
+L C G + +G+GKSG + KI+ TL S G + F++P +ALHGD+G++ S D+++ S
Sbjct: 38 ILHCEGKVVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFIS 97
Query: 110 KSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTST 169
SG +EL ++P + K L+++T + L + + VERE CP LAP +ST
Sbjct: 98 YSGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDISVEREACPMHLAPTSST 157
Query: 170 AIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDL 229
++ GD +A+A+M AR +++A +HPAG +G L+ KV +M+ +P
Sbjct: 158 VNTLMMGDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRRDDAIPQVALTAS 217
Query: 230 IMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRT 289
+MD ++EL+ G G + V D + + G FTDGDLRR L G G V E T
Sbjct: 218 VMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWL--VGGGALTTPVNEAMTTGGTT 275
Query: 290 IGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL 336
+ + A++A + + + PV++ L G + L AG+
Sbjct: 276 LQAQSRAIDAKEVLMK--RKITAAPVVDENGKLTGAINLQDFYQAGI 320
>sp|Q8ZMJ9|GUTQ_SALTY Arabinose 5-phosphate isomerase GutQ OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=gutQ PE=3 SV=2
Length = 321
Score = 172 bits (436), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 160/291 (54%), Gaps = 12/291 (4%)
Query: 50 LLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFS 109
++ C G + +G+GKSG + KI+ TL S G + F++P +ALHGD+G++ S D+++ S
Sbjct: 38 IIHCEGKVIVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFIS 97
Query: 110 KSGNTEELLKVVPCAKAKGAYLVSVT----SVEGNALAAVCDMNVHLPVERELCPFDLAP 165
SG +EL ++P + K L+++T S G A AV D++V ERE CP LAP
Sbjct: 98 YSGGAKELDLIIPRLEDKSVALLAMTGKLHSPLGRAAKAVLDISV----EREACPMHLAP 153
Query: 166 VTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCK 225
+ST ++ GD +A+A+M AR +++A +HPAG +G L+ V +M+ +P
Sbjct: 154 TSSTVNTLMMGDALAMAVMQARGFNEEDFARSHPAGALGARLLNNVHHLMRQGDAIPQVM 213
Query: 226 EGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNR 285
+MD ++EL+ G G + V DE++ + G FTDGDLRR L G G V E
Sbjct: 214 LATSVMDAMLELSRTGLGLVAVCDEQHVVKGVFTDGDLRRWL--VGGGALTTPVSEAMTP 271
Query: 286 SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL 336
+ T+ + A++A + + + PV++ L G + L AG+
Sbjct: 272 NGITLQAQSRAIDAKELLMK--RKITAAPVVDENGKLTGAINLQDFYQAGI 320
>sp|Q8Z4C7|GUTQ_SALTI Arabinose 5-phosphate isomerase GutQ OS=Salmonella typhi GN=gutQ
PE=3 SV=1
Length = 321
Score = 172 bits (436), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 160/291 (54%), Gaps = 12/291 (4%)
Query: 50 LLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFS 109
++ C G + +G+GKSG + KI+ TL S G + F++P +ALHGD+G++ S D+++ S
Sbjct: 38 IIHCEGKVIVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFIS 97
Query: 110 KSGNTEELLKVVPCAKAKGAYLVSVT----SVEGNALAAVCDMNVHLPVERELCPFDLAP 165
SG +EL ++P + K L+++T S G A AV D++V ERE CP LAP
Sbjct: 98 YSGGAKELDLIIPRLEDKSVALLAMTGKPHSPLGRAAKAVLDISV----EREACPMHLAP 153
Query: 166 VTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCK 225
+ST ++ GD +A+A+M AR +++A +HPAG +G L+ V +M+ +P
Sbjct: 154 TSSTVNTLMMGDALAMAVMQARGFNEEDFARSHPAGALGARLLNNVHHLMRQGDAIPQVM 213
Query: 226 EGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNR 285
+MD ++EL+ G G + V DE++ + G FTDGDLRR L G G V E
Sbjct: 214 LATSVMDAMLELSRTGLGLVAVCDEQHVVKGVFTDGDLRRWL--VGGGALTTPVSEAMTP 271
Query: 286 SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL 336
+ T+ + A++A + + + PV++ L G + L AG+
Sbjct: 272 NGITLQAQSRAIDAKELLMK--RKITAAPVVDENGKLTGAINLQDFYQAGI 320
>sp|P17115|GUTQ_ECOLI Arabinose 5-phosphate isomerase GutQ OS=Escherichia coli (strain
K12) GN=gutQ PE=1 SV=3
Length = 321
Score = 172 bits (435), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 95/287 (33%), Positives = 154/287 (53%), Gaps = 4/287 (1%)
Query: 50 LLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFS 109
+L C G + +G+GKSG + KI+ TL S G + F++P +ALHGD+G++ S D+++ S
Sbjct: 38 ILHCEGKVVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFIS 97
Query: 110 KSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTST 169
SG +EL ++P + K L+++T + L + + VERE CP LAP +ST
Sbjct: 98 YSGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDISVEREACPMHLAPTSST 157
Query: 170 AIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDL 229
++ GD +A+A+M AR +++A +HPAG +G L+ KV +M+ +P
Sbjct: 158 VNTLMMGDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRRDDAIPQVALTAS 217
Query: 230 IMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRT 289
+MD ++EL+ G G + V D + + G FTDGDLRR L G G V E T
Sbjct: 218 VMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWL--VGGGALTTPVNEAMTVGGTT 275
Query: 290 IGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL 336
+ + A++A + + + PV++ L G + L AG+
Sbjct: 276 LQSQSRAIDAKEILMK--RKITAAPVVDENGKLTGAINLQDFYQAGI 320
>sp|Q8X4S5|GUTQ_ECO57 Arabinose 5-phosphate isomerase GutQ OS=Escherichia coli O157:H7
GN=gutQ PE=3 SV=3
Length = 321
Score = 172 bits (435), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 95/287 (33%), Positives = 154/287 (53%), Gaps = 4/287 (1%)
Query: 50 LLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFS 109
+L C G + +G+GKSG + KI+ TL S G + F++P +ALHGD+G++ S D+++ S
Sbjct: 38 ILHCEGKVVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFIS 97
Query: 110 KSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTST 169
SG +EL ++P + K L+++T + L + + VERE CP LAP +ST
Sbjct: 98 YSGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDISVEREACPMHLAPTSST 157
Query: 170 AIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDL 229
++ GD +A+A+M AR +++A +HPAG +G L+ KV +M+ +P
Sbjct: 158 VNTLMMGDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRRDDAIPQVALTAS 217
Query: 230 IMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRT 289
+MD ++EL+ G G + V D + + G FTDGDLRR L G G V E T
Sbjct: 218 VMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWL--VGGGALTTPVNEAMTVGGTT 275
Query: 290 IGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL 336
+ + A++A + + + PV++ L G + L AG+
Sbjct: 276 LQSQSRAIDAKEILMK--RKITAAPVVDENGKLTGAINLQDFYQAGI 320
>sp|Q8FEN7|GUTQ_ECOL6 Arabinose 5-phosphate isomerase GutQ OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=gutQ PE=3 SV=1
Length = 321
Score = 171 bits (434), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 95/287 (33%), Positives = 155/287 (54%), Gaps = 4/287 (1%)
Query: 50 LLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFS 109
+L C G + +G+GKSG + KI+ TL S G + F++P +ALHGD+G++ S D+++ S
Sbjct: 38 ILHCEGKVVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFIS 97
Query: 110 KSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTST 169
SG +EL ++P + K L+++T + L + + VERE CP LAP +ST
Sbjct: 98 YSGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDISVEREACPMHLAPTSST 157
Query: 170 AIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDL 229
++ GD +A+A+M AR +++A +HPAG +G L+ KV +M+ +P
Sbjct: 158 VNTLMMGDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRRDDAIPQVALTAS 217
Query: 230 IMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRT 289
+MD ++EL+ G G + V D++ + G FTDGDLRR L G G V E T
Sbjct: 218 VMDAMLELSRTGLGLVAVCDDQRLVKGVFTDGDLRRWL--VGGGALTTPVNEAMTVGGTT 275
Query: 290 IGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL 336
+ + A++A + + + PV++ L G + L AG+
Sbjct: 276 LQSQSRAIDAKEILMK--RKITAAPVVDENGKLTGAINLQDFYQAGI 320
>sp|Q9ZD42|Y505_RICPR Uncharacterized protein RP505 OS=Rickettsia prowazekii (strain
Madrid E) GN=RP505 PE=3 SV=1
Length = 319
Score = 152 bits (384), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 140/256 (54%), Gaps = 5/256 (1%)
Query: 50 LLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFS 109
LL +G I TG+GKSG++A KI+ + S G+ S +L+P +A HGD+G+++ +D+++M S
Sbjct: 40 LLSFKGRIILTGIGKSGYIARKIAASFSSTGMPSFYLHPAEASHGDLGMITRNDLVMMLS 99
Query: 110 KSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTST 169
SG T+EL ++ + ++T + + LA D + +P +E P S+
Sbjct: 100 NSGETKELFNIIEYCNNSSIKIAAMTMNKNSTLAKRSDFLLKIPECQEASLIG-TPTISS 158
Query: 170 AIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDL 229
I + GD + + R TRD++ HP G IG +L K++++M+ E+P+ E
Sbjct: 159 LIMLSLGDAIMTVIHEERGFTRDDFKIYHPGGTIGANLT-KIKNIMRSGDEIPLVYEDTS 217
Query: 230 IMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRT 289
+ ++ + K GC LV D+E +LIG TDGDLRR + + I T + ++P
Sbjct: 218 FTETIIIMNKKRLGCTLVTDKEQNLIGIITDGDLRRNIH---DQIHLKTASSIMTKNPHY 274
Query: 290 IGPDAMAVEAMQKMES 305
I + A EA+ M++
Sbjct: 275 ISSEIFAQEALNLMKA 290
>sp|O25971|Y1429_HELPY Uncharacterized protein HP_1429 OS=Helicobacter pylori (strain ATCC
700392 / 26695) GN=HP_1429 PE=3 SV=1
Length = 329
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 157/283 (55%), Gaps = 6/283 (2%)
Query: 55 GTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNT 114
G + GVGKS VA KI +++S G +S FL+P +A+HGD+G++ +D+++M S G +
Sbjct: 50 GKLVIVGVGKSALVAQKIVASMLSTGNRSAFLHPTEAMHGDLGMVEKNDVVLMISYGGES 109
Query: 115 EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMV 174
ELL +V K +++ T ++L+ + D + L +++E CP + AP TST + +
Sbjct: 110 LELLNLVSHLKRLSHKIITFTKSPNSSLSKLGDYYLSLKIQKEACPINTAPTTSTTLTLA 169
Query: 175 FGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQL 234
GD + +M A+N +++++A+ HP G +GK L KV+D+++ LP+ D L
Sbjct: 170 LGDVLMACLMRAKNFSQEDFASFHPGGLLGKKLFVKVKDLLQTT-NLPLIAPSTSFKDAL 228
Query: 235 VELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGI-FKLTVGEMCNRSPRTIGPD 293
+E++ K G ++++E L+G +DGD+RR L +G+ K V P++ +
Sbjct: 229 IEMSEKRLGSAILVNEANELVGVLSDGDVRRALL---KGVSLKSEVRHFATLKPKSF-KN 284
Query: 294 AMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL 336
A+ +Q L ++ N ++G++ LH L+ GL
Sbjct: 285 LDALLLEALEFLERHKIQLLVCVDDHNKVLGVLHLHQLLELGL 327
>sp|Q9ZJI5|YE29_HELPJ Uncharacterized protein jhp_1324 OS=Helicobacter pylori (strain
J99) GN=jhp_1324 PE=3 SV=1
Length = 329
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 158/283 (55%), Gaps = 6/283 (2%)
Query: 55 GTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNT 114
G + GVGKS VA KI +++S G +S FL+P +A+HGD+G++ +D+++M S G +
Sbjct: 50 GKLVIVGVGKSALVAQKIVASMLSTGNRSAFLHPTEAMHGDLGMVEKNDVILMISYGGES 109
Query: 115 EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMV 174
ELL +V K +++ T ++L+ + D + L +++E CP + AP TST + +
Sbjct: 110 LELLNLVSHLKRLSHKIITFTKSPTSSLSKLGDYYLSLKIKKEACPINTAPTTSTTLTLA 169
Query: 175 FGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQL 234
GD + +M A+N +++++A+ HP G +GK L KV+D+++ LP+ D L
Sbjct: 170 LGDVLMACLMRAKNFSQEDFASFHPGGLLGKKLFVKVKDLLQTT-NLPLIAPSTSFKDAL 228
Query: 235 VELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGI-FKLTVGEMCNRSPRTIGPD 293
+E++ K G +++++ L+G +DGD+RR L +G+ + V P++ +
Sbjct: 229 IEMSEKRLGSAILVNDNNELVGVLSDGDVRRALL---KGLSLESEVKHFATLKPKSF-KN 284
Query: 294 AMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL 336
A+ +Q L ++ +N ++G++ LH L+ GL
Sbjct: 285 LDALLLEALEFLERHKIQLLVCVDDRNKVLGVLHLHQLLELGL 327
>sp|O28478|Y1796_ARCFU Uncharacterized protein AF_1796 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_1796 PE=1 SV=1
Length = 183
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 85/190 (44%), Gaps = 20/190 (10%)
Query: 20 LLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL 79
+L + +H+ H+ L T+ L+ +IF G G+SG++A + L+ L
Sbjct: 1 MLRFLEVVSEHIKNLRNHIDLE-TVGEMIKLIDSARSIFVIGAGRSGYIAKAFAMRLMHL 59
Query: 80 G----IKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVT 135
G + + P ++ D+LV S SG T ++ + AK G+ LV+VT
Sbjct: 60 GYTVYVVGETVTPR---------ITDQDVLVAISGSGETTSVVNISKKAKDIGSKLVAVT 110
Query: 136 SVEGNALAAVCDMNV----HLPVERELCPFDLAPVTS--TAIQMVFGDTVAIAMMGARNL 189
++LA + D+ + + ER+ LAP+ + M+F D + +M ++L
Sbjct: 111 GKRDSSLAKMADVVMVVKGKMKQERDEILSQLAPLGTMFELTAMIFLDALVAEIMMQKHL 170
Query: 190 TRDEYAANHP 199
T + A H
Sbjct: 171 TEKDLEARHA 180
>sp|Q45581|YBBH_BACSU Uncharacterized HTH-type transcriptional regulator YbbH OS=Bacillus
subtilis (strain 168) GN=ybbH PE=1 SV=3
Length = 283
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 11/145 (7%)
Query: 9 DLLPHK----VSENTLLDLFKSQQDHLNYF-FQHLSLPHTLTFTQTLLKCRGTIFFTGVG 63
D++PH+ +SE T + ++ QD + ++ L +L LLK T+ F G+G
Sbjct: 86 DIVPHEPLPSISEKTAGNAIQAIQDTSDLMDYKELERAVSL-----LLKAH-TVHFIGLG 139
Query: 64 KSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPC 123
SG VA Q + + ++ + I DDI+ S SG T+E++++
Sbjct: 140 ASGIVAKDAQQKWLRIHKQATAFTDTHLVASLIANADKDDIVFAISFSGETQEIVELFAM 199
Query: 124 AKAKGAYLVSVTSVEGNALAAVCDM 148
AK KG +S+T +++A+ D+
Sbjct: 200 AKEKGITTISLTQFSQTSVSALADV 224
>sp|P26833|Y189_CLOPE Uncharacterized HTH-type transcriptional regulator CPE0189
OS=Clostridium perfringens (strain 13 / Type A)
GN=CPE0189 PE=4 SV=1
Length = 279
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 52 KCRGTI------FFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDI---GILSSD 102
KCR I +F G+G SG A I+ + +G + P+ H + I + D
Sbjct: 122 KCRDLIMNAKRVYFIGIGYSGIAATDINYKFMRIGFTTV---PVTDSHTMVIMSSITNDD 178
Query: 103 DILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCD 147
D++V S SG T+E++K V AK G ++++T N L + D
Sbjct: 179 DVIVAISNSGTTKEVIKTVKQAKENGTKIITLTEDSDNPLRKLSD 223
>sp|Q58332|Y922_METJA Uncharacterized protein MJ0922 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0922 PE=1 SV=1
Length = 138
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 6/122 (4%)
Query: 209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK 268
KV+DVM K + K + +++ ++ L VID+E +IG T D+ L
Sbjct: 8 IKVKDVM--TKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNL- 64
Query: 269 ASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKME---SPPSPVQFLPVINRQNILIGI 325
+ + T+G++ + TI DA +EA++KM+ + LPV+++ N L+GI
Sbjct: 65 IRDKYTLETTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGI 124
Query: 326 VT 327
++
Sbjct: 125 IS 126
>sp|Q1BYA7|GLK_BURCA Bifunctional protein glk OS=Burkholderia cenocepacia (strain AU
1054) GN=glk PE=3 SV=1
Length = 642
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 36 QHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGD 95
+HL+ H + L R I F G+G S VA GI + L
Sbjct: 451 EHLNFEHVENAIEILNGAR-RIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAAS 509
Query: 96 IGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTS 136
+L D++V SKSG ELL+V+ A GA ++++TS
Sbjct: 510 AALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITS 550
>sp|Q39IQ1|GLK_BURS3 Bifunctional protein glk OS=Burkholderia sp. (strain 383) GN=glk
PE=3 SV=1
Length = 642
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 36 QHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGD 95
+HL+ H + L R I F G+G S VA GI + L
Sbjct: 451 EHLNFEHVENAIEILNGAR-RIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAAS 509
Query: 96 IGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTS 136
+L D++V SKSG ELL+V+ A GA ++++TS
Sbjct: 510 AALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITS 550
>sp|Q2SYA5|GLK_BURTA Bifunctional protein glk OS=Burkholderia thailandensis (strain E264
/ ATCC 700388 / DSM 13276 / CIP 106301) GN=glk PE=3 SV=1
Length = 641
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Query: 36 QHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGD 95
+HL+ H L R I F G+G S VA GI + L
Sbjct: 451 EHLNFEHVEQAIDILNNAR-RIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAAS 509
Query: 96 IGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTS 136
+L D++V SKSG ELL+V+ A GA ++++TS
Sbjct: 510 AALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITS 550
>sp|Q63RQ7|GLK_BURPS Bifunctional protein glk OS=Burkholderia pseudomallei (strain
K96243) GN=glk PE=3 SV=1
Length = 641
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Query: 36 QHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGD 95
+HL+ H L R I F G+G S VA GI + L
Sbjct: 451 EHLNFEHVEQAIDILNNAR-RIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAAS 509
Query: 96 IGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTS 136
+L D++V SKSG ELL+V+ A GA ++++TS
Sbjct: 510 AALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITS 550
>sp|Q3JPP0|GLK_BURP1 Bifunctional protein glk OS=Burkholderia pseudomallei (strain
1710b) GN=glk PE=3 SV=1
Length = 641
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Query: 36 QHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGD 95
+HL+ H L R I F G+G S VA GI + L
Sbjct: 451 EHLNFEHVEQAIDILNNAR-RIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAAS 509
Query: 96 IGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTS 136
+L D++V SKSG ELL+V+ A GA ++++TS
Sbjct: 510 AALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITS 550
>sp|Q62HW8|GLK_BURMA Bifunctional protein glk OS=Burkholderia mallei (strain ATCC 23344)
GN=glk PE=3 SV=1
Length = 641
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Query: 36 QHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGD 95
+HL+ H L R I F G+G S VA GI + L
Sbjct: 451 EHLNFEHVEQAIDILNNAR-RIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQAAS 509
Query: 96 IGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTS 136
+L D++V SKSG ELL+V+ A GA ++++TS
Sbjct: 510 AALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITS 550
>sp|Q2RR43|GMHA_RHORT Phosphoheptose isomerase OS=Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255) GN=gmhA PE=3 SV=1
Length = 188
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 73 SQTLISLGIKSGFLNPLD---ALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGA 129
+ TL ++G GF + + HG G D+LV S SGN+ +LK + A+ KG
Sbjct: 82 TSTLTAVGNDYGFDHIFSRQVSAHGRPG-----DVLVALSTSGNSANVLKAIEAAREKGV 136
Query: 130 YLVSVTSVEGNALAAVCDMNVHLP 153
++ +T G +A VCD+ + +P
Sbjct: 137 SVIGLTGAGGGKMAEVCDLCIRVP 160
>sp|Q143F8|GLK_BURXL Bifunctional protein glk OS=Burkholderia xenovorans (strain LB400)
GN=glk PE=3 SV=1
Length = 638
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 9/123 (7%)
Query: 14 KVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKIS 73
KV +NT+ + + ++ HLN F+H+ LL I F G+G S VA
Sbjct: 438 KVLDNTVSAILQLRE-HLN--FEHVER------AIDLLNGARRIEFYGLGNSNIVAQDAH 488
Query: 74 QTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVS 133
GI + L +L D++V SKSG ELL+V+ A GA +++
Sbjct: 489 YKFFRFGIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIA 548
Query: 134 VTS 136
+TS
Sbjct: 549 ITS 551
>sp|P37767|YFHH_ECOLI Uncharacterized HTH-type transcriptional regulator YfhH
OS=Escherichia coli (strain K12) GN=yfhH PE=4 SV=2
Length = 282
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%)
Query: 49 TLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMF 108
T+L+ I TG+G SG VA + L+ +G + + + AL + S DD+L+
Sbjct: 127 TMLRSARRIILTGIGASGLVAQNFAWKLMKIGFNAAAVRDMHALLATVQASSPDDLLLAI 186
Query: 109 SKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNAL 142
S +G EL G ++++T NAL
Sbjct: 187 SYTGVRRELNLAADEMLRVGGKVLAITGFTPNAL 220
>sp|Q58644|PHI_METJA 3-hexulose-6-phosphate isomerase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=phi PE=1 SV=1
Length = 180
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 8/142 (5%)
Query: 57 IFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEE 116
IF GVG+SG++ + L+ LG KS F+ + DD+L++ S SG TE
Sbjct: 43 IFIFGVGRSGYIGRCFAMRLMHLGFKSYFVGETTTPSYE-----KDDLLILISGSGRTES 97
Query: 117 LLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFG 176
+L V AK ++++ GN + ++ +P+E + + T ++F
Sbjct: 98 VLTVAKKAKNINNNIIAIVCECGNVVEFA---DLTIPLEVKKSKYLPMGTTFEETALIFL 154
Query: 177 DTVAIAMMGARNLTRDEYAANH 198
D V +M NL E H
Sbjct: 155 DLVIAEIMKRLNLDESEIIKRH 176
>sp|Q87MG7|GMHA_VIBPA Phosphoheptose isomerase OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=gmhA PE=3 SV=1
Length = 191
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 103 DILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLP 153
D+L S SGN+ +LK + AKAKG V++T +G +A + D+ + +P
Sbjct: 113 DVLFGLSTSGNSGNILKAIEAAKAKGMKTVALTGKDGGKMAGLADVEIRVP 163
>sp|Q8KG38|GLMS_CHLTE Glutamine--fructose-6-phosphate aminotransferase [isomerizing]
OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 /
TLS) GN=glmS PE=3 SV=3
Length = 614
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 54/102 (52%), Gaps = 7/102 (6%)
Query: 98 ILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNAL--AAVCDMNVHLPVE 155
I+SSDD++++ S+SG T + L + AK KGA ++ + +V G+ + +C M H E
Sbjct: 343 IVSSDDVVIVISQSGETADTLAALRLAKEKGAMVMGICNVVGSTIPRETLCGMYTHAGPE 402
Query: 156 RELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAAN 197
+A + Q++ +A+A+ R ++++E N
Sbjct: 403 -----VGVASTKAFTAQVIVLFMLAMALSKGRTISQEEIKLN 439
>sp|Q9KPY2|GMHA_VIBCH Phosphoheptose isomerase OS=Vibrio cholerae serotype O1 (strain
ATCC 39315 / El Tor Inaba N16961) GN=gmhA PE=1 SV=1
Length = 191
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 103 DILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLP 153
D+L S SGN+ +LK + AKAKG +++T +G +A + D+ + +P
Sbjct: 113 DVLFGLSTSGNSGNILKAIEAAKAKGMKTIALTGKDGGKMAGLADVEIRVP 163
>sp|Q8DBC5|GMHA_VIBVU Phosphoheptose isomerase OS=Vibrio vulnificus (strain CMCP6)
GN=gmhA PE=3 SV=1
Length = 191
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 103 DILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLP 153
D+L S SGN+ +LK + AKAKG +++T +G +A + D+ + +P
Sbjct: 113 DVLFGLSTSGNSGNILKAIEAAKAKGMKTIALTGKDGGKMAGLADVEIRVP 163
>sp|Q2NVF5|GMHA_SODGM Phosphoheptose isomerase OS=Sodalis glossinidius (strain morsitans)
GN=gmhA PE=3 SV=1
Length = 194
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 103 DILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLP 153
D+LV S SGN+ +++ + A+AKG ++ +T EG +A D+ + +P
Sbjct: 113 DVLVGISTSGNSANIIRAIDAARAKGMRVIVLTGKEGGKMAGSADVEIRVP 163
>sp|B0USS3|GMHA_HAES2 Phosphoheptose isomerase OS=Haemophilus somnus (strain 2336)
GN=gmhA PE=3 SV=1
Length = 195
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 33/51 (64%)
Query: 103 DILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLP 153
D+L+ S SGN++ +L + AKAKG ++++T +G +A + D+ + +P
Sbjct: 113 DVLLGISTSGNSKNVLNAIEAAKAKGMKVIALTGKDGGKMAGLADVEIRVP 163
>sp|A5UIU8|GMHA_HAEIG Phosphoheptose isomerase OS=Haemophilus influenzae (strain PittGG)
GN=gmhA PE=3 SV=1
Length = 194
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%)
Query: 103 DILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLP 153
D+L S SGN++ +L + AKAKG ++++T +G +A + D+ + +P
Sbjct: 113 DVLFGLSTSGNSKNILNAIEAAKAKGMKVIAMTGKDGGKMAGLADVEIRVP 163
>sp|A1SUJ5|GMHA_PSYIN Phosphoheptose isomerase OS=Psychromonas ingrahamii (strain 37)
GN=gmhA PE=3 SV=1
Length = 191
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 97 GILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLP 153
G+ D+L S SGN++ +L + AKAKG ++++T +G ++ + D+ + +P
Sbjct: 107 GVGRKGDVLFCLSTSGNSKNILNAIEVAKAKGISVIALTGKDGGKMSGLADVEIRVP 163
>sp|Q11Y71|GMHA_CYTH3 Phosphoheptose isomerase OS=Cytophaga hutchinsonii (strain ATCC
33406 / NCIMB 9469) GN=gmhA PE=3 SV=1
Length = 191
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 6/74 (8%)
Query: 80 GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEG 139
G K F L+AL G+ G D+L+ S SGN+E +L+ V AK KG ++V++T +G
Sbjct: 96 GYKFVFSRYLEAL-GNKG-----DVLLAISTSGNSENVLEAVKEAKNKGMFVVALTGKDG 149
Query: 140 NALAAVCDMNVHLP 153
L + D+ +++P
Sbjct: 150 GKLLPLADVCINVP 163
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,659,526
Number of Sequences: 539616
Number of extensions: 5029511
Number of successful extensions: 11949
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 141
Number of HSP's that attempted gapping in prelim test: 11638
Number of HSP's gapped (non-prelim): 415
length of query: 336
length of database: 191,569,459
effective HSP length: 118
effective length of query: 218
effective length of database: 127,894,771
effective search space: 27881060078
effective search space used: 27881060078
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)