Query 019775
Match_columns 336
No_of_seqs 237 out of 2913
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 04:26:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019775.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019775hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11543 gutQ D-arabinose 5-ph 100.0 4.1E-47 9E-52 344.3 36.7 314 18-336 7-320 (321)
2 PRK10892 D-arabinose 5-phospha 100.0 1.5E-46 3.2E-51 341.1 35.6 319 12-335 6-324 (326)
3 TIGR00393 kpsF KpsF/GutQ famil 100.0 3.1E-41 6.7E-46 298.5 30.1 268 55-327 1-268 (268)
4 COG0794 GutQ Predicted sugar p 100.0 4.5E-30 9.7E-35 209.3 21.4 199 18-216 3-201 (202)
5 COG1737 RpiR Transcriptional r 100.0 4.4E-28 9.5E-33 214.4 19.1 180 11-193 88-267 (281)
6 cd05005 SIS_PHI Hexulose-6-pho 100.0 2.1E-27 4.5E-32 197.0 21.8 172 22-199 2-179 (179)
7 TIGR03127 RuMP_HxlB 6-phospho 100.0 2.3E-27 4.9E-32 197.0 21.4 169 26-200 3-177 (179)
8 PRK15482 transcriptional regul 100.0 4.6E-27 1E-31 209.3 19.9 174 14-190 96-269 (285)
9 PRK11557 putative DNA-binding 99.9 1.4E-26 3E-31 205.7 18.9 175 14-191 89-263 (278)
10 PRK11337 DNA-binding transcrip 99.9 3.6E-26 7.8E-31 204.4 20.1 174 14-190 101-274 (292)
11 PRK11302 DNA-binding transcrip 99.9 8E-25 1.7E-29 195.2 19.0 173 14-190 89-261 (284)
12 cd05014 SIS_Kpsf KpsF-like pro 99.9 2E-23 4.3E-28 163.8 15.7 127 55-181 1-127 (128)
13 PRK14101 bifunctional glucokin 99.9 6.2E-23 1.3E-27 201.5 18.9 176 14-193 429-607 (638)
14 PRK02947 hypothetical protein; 99.9 9.6E-22 2.1E-26 170.3 17.3 187 18-206 2-232 (246)
15 cd05013 SIS_RpiR RpiR-like pro 99.9 1.2E-21 2.6E-26 155.7 15.3 137 42-181 2-138 (139)
16 PF01380 SIS: SIS domain SIS d 99.9 3.5E-21 7.6E-26 151.6 11.7 129 49-181 1-130 (131)
17 cd05008 SIS_GlmS_GlmD_1 SIS (S 99.9 7E-21 1.5E-25 148.9 13.1 120 56-176 1-121 (126)
18 cd05006 SIS_GmhA Phosphoheptos 99.8 9E-20 1.9E-24 151.0 17.6 139 35-182 11-174 (177)
19 PRK00414 gmhA phosphoheptose i 99.8 2.1E-19 4.6E-24 149.8 17.1 136 21-157 7-167 (192)
20 PRK13936 phosphoheptose isomer 99.8 6.9E-19 1.5E-23 147.5 18.3 157 21-186 8-191 (197)
21 PRK05441 murQ N-acetylmuramic 99.8 3.5E-19 7.6E-24 158.2 16.5 187 17-207 24-235 (299)
22 TIGR00441 gmhA phosphoheptose 99.8 2.9E-19 6.2E-24 144.1 13.6 130 44-182 2-152 (154)
23 cd05710 SIS_1 A subgroup of th 99.8 2.9E-19 6.2E-24 138.0 11.2 100 56-155 1-101 (120)
24 PRK13937 phosphoheptose isomer 99.8 1.4E-18 3E-23 144.8 15.9 136 41-185 26-182 (188)
25 PRK10886 DnaA initiator-associ 99.8 4.6E-18 1E-22 141.2 18.7 137 41-186 25-189 (196)
26 PRK13938 phosphoheptose isomer 99.8 4.1E-18 8.9E-23 141.7 18.4 136 41-185 29-189 (196)
27 cd05007 SIS_Etherase N-acetylm 99.8 3E-18 6.5E-23 149.2 18.0 217 15-242 9-249 (257)
28 PRK00331 glucosamine--fructose 99.8 1.8E-18 3.9E-23 169.4 18.0 173 11-188 245-420 (604)
29 TIGR00274 N-acetylmuramic acid 99.8 2.5E-18 5.4E-23 151.7 16.5 188 16-206 18-229 (291)
30 PRK11382 frlB fructoselysine-6 99.8 6.4E-18 1.4E-22 153.8 17.4 135 20-156 10-147 (340)
31 TIGR01135 glmS glucosamine--fr 99.8 1.2E-17 2.6E-22 163.7 17.2 234 12-265 245-485 (607)
32 PTZ00295 glucosamine-fructose- 99.8 3.1E-17 6.7E-22 161.2 19.5 164 10-176 269-444 (640)
33 PLN02981 glucosamine:fructose- 99.8 4.3E-17 9.2E-22 160.4 19.7 170 11-185 309-491 (680)
34 PTZ00394 glucosamine-fructose- 99.8 4.1E-17 9E-22 159.9 19.1 172 11-187 303-484 (670)
35 PRK12570 N-acetylmuramic acid- 99.8 6.9E-17 1.5E-21 143.1 18.4 195 8-206 14-230 (296)
36 COG2524 Predicted transcriptio 99.7 9.9E-18 2.2E-22 139.2 11.0 122 205-334 168-289 (294)
37 cd05017 SIS_PGI_PMI_1 The memb 99.7 1.5E-16 3.2E-21 122.8 12.4 96 56-157 1-101 (119)
38 cd05009 SIS_GlmS_GlmD_2 SIS (S 99.7 3E-16 6.5E-21 126.8 14.3 141 42-193 2-144 (153)
39 COG2222 AgaS Predicted phospho 99.7 4.9E-16 1.1E-20 139.2 16.0 137 20-157 5-143 (340)
40 TIGR02815 agaS_fam putative su 99.7 7.1E-16 1.5E-20 141.8 16.1 155 24-180 9-176 (372)
41 COG0449 GlmS Glucosamine 6-pho 99.7 2.3E-15 4.9E-20 141.7 15.8 175 9-188 237-414 (597)
42 COG3620 Predicted transcriptio 99.7 6.9E-16 1.5E-20 118.9 10.0 119 208-334 64-182 (187)
43 cd04619 CBS_pair_6 The CBS dom 99.7 1.7E-15 3.6E-20 116.1 12.1 110 222-333 4-113 (114)
44 cd04630 CBS_pair_17 The CBS do 99.7 2.5E-15 5.3E-20 115.1 12.6 111 221-334 3-114 (114)
45 COG0279 GmhA Phosphoheptose is 99.6 7.4E-15 1.6E-19 114.6 14.8 133 24-157 9-165 (176)
46 cd04603 CBS_pair_KefB_assoc Th 99.6 3.1E-15 6.6E-20 114.0 11.2 108 222-334 4-111 (111)
47 cd04641 CBS_pair_28 The CBS do 99.6 8.6E-15 1.9E-19 113.1 12.5 112 221-334 3-120 (120)
48 cd04618 CBS_pair_5 The CBS dom 99.6 4.2E-15 9E-20 110.7 9.8 94 221-334 3-98 (98)
49 PRK07107 inosine 5-monophospha 99.6 2.3E-14 5E-19 135.4 16.6 159 164-334 52-218 (502)
50 cd04623 CBS_pair_10 The CBS do 99.6 1.6E-14 3.4E-19 110.1 12.6 111 221-334 3-113 (113)
51 cd04600 CBS_pair_HPP_assoc Thi 99.6 1.3E-14 2.7E-19 112.7 12.1 112 221-334 4-124 (124)
52 cd04593 CBS_pair_EriC_assoc_ba 99.6 2E-14 4.4E-19 110.1 12.9 111 221-334 3-115 (115)
53 cd04643 CBS_pair_30 The CBS do 99.6 2E-14 4.3E-19 110.2 12.3 110 221-334 3-116 (116)
54 cd04639 CBS_pair_26 The CBS do 99.6 2E-14 4.4E-19 109.2 12.1 108 221-333 3-110 (111)
55 cd04617 CBS_pair_4 The CBS dom 99.6 2.2E-14 4.7E-19 110.6 12.3 110 221-333 3-117 (118)
56 COG3448 CBS-domain-containing 99.6 6.1E-15 1.3E-19 125.0 9.3 155 176-334 208-370 (382)
57 PRK01862 putative voltage-gate 99.6 3.9E-14 8.5E-19 138.0 16.2 126 204-334 442-569 (574)
58 PRK15094 magnesium/cobalt effl 99.6 1.6E-14 3.4E-19 128.3 12.1 120 209-334 67-187 (292)
59 cd04631 CBS_pair_18 The CBS do 99.6 3.2E-14 7E-19 110.5 12.2 112 221-334 3-125 (125)
60 cd04583 CBS_pair_ABC_OpuCA_ass 99.6 3.5E-14 7.5E-19 107.5 12.0 105 221-333 4-108 (109)
61 cd04587 CBS_pair_CAP-ED_DUF294 99.6 3.3E-14 7.2E-19 108.4 11.6 111 221-334 3-113 (113)
62 cd04605 CBS_pair_MET2_assoc Th 99.6 4.9E-14 1.1E-18 107.0 12.4 106 221-333 4-109 (110)
63 cd04604 CBS_pair_KpsF_GutQ_ass 99.6 4.9E-14 1.1E-18 107.6 12.4 110 221-333 4-113 (114)
64 cd04801 CBS_pair_M50_like This 99.6 3.1E-14 6.6E-19 108.9 11.3 108 221-333 3-113 (114)
65 cd04596 CBS_pair_DRTGG_assoc T 99.6 3E-14 6.5E-19 107.9 10.8 105 221-334 4-108 (108)
66 cd04624 CBS_pair_11 The CBS do 99.6 7.4E-14 1.6E-18 106.3 12.9 110 221-334 3-112 (112)
67 cd04613 CBS_pair_SpoIVFB_EriC_ 99.6 5.9E-14 1.3E-18 107.0 12.2 111 221-334 3-114 (114)
68 cd04615 CBS_pair_2 The CBS dom 99.6 5E-14 1.1E-18 107.4 11.8 109 222-333 4-112 (113)
69 cd04607 CBS_pair_NTP_transfera 99.6 6.5E-14 1.4E-18 106.9 12.3 108 222-333 5-112 (113)
70 cd04803 CBS_pair_15 The CBS do 99.6 5.4E-14 1.2E-18 108.8 11.9 111 221-333 3-121 (122)
71 cd04629 CBS_pair_16 The CBS do 99.6 3.6E-14 7.8E-19 108.3 10.6 111 221-334 3-114 (114)
72 cd04621 CBS_pair_8 The CBS dom 99.6 5.8E-14 1.3E-18 111.0 12.1 111 221-334 3-135 (135)
73 cd04614 CBS_pair_1 The CBS dom 99.6 3.6E-14 7.9E-19 105.2 10.2 94 221-334 3-96 (96)
74 cd04590 CBS_pair_CorC_HlyC_ass 99.6 8E-14 1.7E-18 105.9 12.4 107 221-333 3-110 (111)
75 cd04627 CBS_pair_14 The CBS do 99.6 7.1E-14 1.5E-18 108.5 12.1 110 221-332 3-121 (123)
76 cd04608 CBS_pair_PALP_assoc Th 99.6 3.9E-14 8.4E-19 110.2 10.5 113 221-334 4-123 (124)
77 cd04595 CBS_pair_DHH_polyA_Pol 99.5 9E-14 2E-18 105.5 12.2 107 221-334 4-110 (110)
78 cd04622 CBS_pair_9 The CBS dom 99.5 9.5E-14 2E-18 105.8 12.4 111 221-334 3-113 (113)
79 cd04625 CBS_pair_12 The CBS do 99.5 1.2E-13 2.6E-18 105.1 12.9 110 221-334 3-112 (112)
80 cd04626 CBS_pair_13 The CBS do 99.5 8.5E-14 1.8E-18 105.8 11.9 108 221-333 3-110 (111)
81 cd04611 CBS_pair_PAS_GGDEF_DUF 99.5 1.1E-13 2.4E-18 105.1 12.1 108 221-333 3-110 (111)
82 cd04642 CBS_pair_29 The CBS do 99.5 4.9E-14 1.1E-18 109.9 10.2 111 221-333 3-125 (126)
83 cd04582 CBS_pair_ABC_OpuCA_ass 99.5 1.4E-13 3E-18 103.7 12.2 103 221-333 3-105 (106)
84 PRK08674 bifunctional phosphog 99.5 2E-13 4.3E-18 124.4 15.5 142 24-185 8-154 (337)
85 cd04586 CBS_pair_BON_assoc Thi 99.5 6.9E-14 1.5E-18 110.4 11.0 111 221-334 4-135 (135)
86 cd04588 CBS_pair_CAP-ED_DUF294 99.5 1.6E-13 3.4E-18 104.1 12.5 107 221-333 3-109 (110)
87 cd04632 CBS_pair_19 The CBS do 99.5 1.3E-13 2.9E-18 107.7 12.2 112 221-334 3-128 (128)
88 PRK07807 inosine 5-monophospha 99.5 6.6E-14 1.4E-18 131.6 11.9 116 208-334 88-203 (479)
89 COG4109 Predicted transcriptio 99.5 3E-14 6.5E-19 123.6 8.7 118 208-334 187-304 (432)
90 cd04636 CBS_pair_23 The CBS do 99.5 1.3E-13 2.9E-18 108.3 11.7 111 221-334 3-132 (132)
91 cd04800 CBS_pair_CAP-ED_DUF294 99.5 2E-13 4.3E-18 103.8 12.0 108 221-333 3-110 (111)
92 TIGR03520 GldE gliding motilit 99.5 8.2E-14 1.8E-18 129.6 11.6 119 208-334 190-309 (408)
93 cd04795 SIS SIS domain. SIS (S 99.5 6.2E-14 1.3E-18 101.9 8.6 79 57-135 1-81 (87)
94 cd04635 CBS_pair_22 The CBS do 99.5 1.3E-13 2.7E-18 106.7 10.9 112 221-334 3-122 (122)
95 cd04640 CBS_pair_27 The CBS do 99.5 1.6E-13 3.4E-18 107.1 11.4 111 221-333 3-125 (126)
96 cd04620 CBS_pair_7 The CBS dom 99.5 2.1E-13 4.5E-18 104.4 11.8 110 221-334 3-115 (115)
97 cd04585 CBS_pair_ACT_assoc2 Th 99.5 1.9E-13 4.1E-18 105.5 11.6 111 221-334 3-122 (122)
98 cd04612 CBS_pair_SpoIVFB_EriC_ 99.5 2.8E-13 6E-18 102.8 12.3 108 221-333 3-110 (111)
99 cd04589 CBS_pair_CAP-ED_DUF294 99.5 2.8E-13 6.1E-18 102.9 12.3 109 221-334 3-111 (111)
100 PF13580 SIS_2: SIS domain; PD 99.5 1.8E-13 3.9E-18 108.2 11.1 98 39-136 17-138 (138)
101 cd04602 CBS_pair_IMPDH_2 This 99.5 2.2E-13 4.7E-18 104.2 10.9 105 221-333 4-113 (114)
102 cd04606 CBS_pair_Mg_transporte 99.5 2.1E-13 4.6E-18 103.4 10.4 103 223-334 1-108 (109)
103 COG2905 Predicted signal-trans 99.5 2.5E-13 5.5E-18 125.0 12.7 126 204-335 144-269 (610)
104 COG4821 Uncharacterized protei 99.5 1.9E-12 4E-17 103.9 15.8 162 41-204 22-227 (243)
105 cd04802 CBS_pair_3 The CBS dom 99.5 4.8E-13 1E-17 101.8 12.2 109 221-333 3-111 (112)
106 cd04637 CBS_pair_24 The CBS do 99.5 6.6E-13 1.4E-17 102.7 12.9 111 221-334 3-122 (122)
107 cd04601 CBS_pair_IMPDH This cd 99.5 2.5E-13 5.3E-18 102.9 9.4 105 221-333 4-109 (110)
108 cd04594 CBS_pair_EriC_assoc_ar 99.5 6.2E-13 1.3E-17 99.9 11.1 100 223-334 5-104 (104)
109 cd04610 CBS_pair_ParBc_assoc T 99.5 5.3E-13 1.1E-17 100.6 10.3 103 221-333 4-106 (107)
110 cd04584 CBS_pair_ACT_assoc Thi 99.5 1E-12 2.2E-17 101.4 12.1 111 221-334 3-121 (121)
111 cd04599 CBS_pair_GGDEF_assoc2 99.5 6E-13 1.3E-17 100.0 10.4 102 221-333 3-104 (105)
112 cd04633 CBS_pair_20 The CBS do 99.5 6.9E-13 1.5E-17 102.4 11.0 110 221-334 3-121 (121)
113 cd04591 CBS_pair_EriC_assoc_eu 99.5 8.1E-13 1.8E-17 99.6 11.1 99 221-334 4-105 (105)
114 cd04609 CBS_pair_PALP_assoc2 T 99.4 1.3E-12 2.8E-17 98.9 11.6 108 221-334 3-110 (110)
115 cd02205 CBS_pair The CBS domai 99.4 1.9E-12 4E-17 97.9 12.4 111 221-334 3-113 (113)
116 TIGR01303 IMP_DH_rel_1 IMP deh 99.4 5.7E-13 1.2E-17 125.2 11.3 125 198-334 73-201 (475)
117 TIGR01302 IMP_dehydrog inosine 99.4 1E-12 2.3E-17 123.7 11.6 115 210-334 81-199 (450)
118 TIGR02128 G6PI_arch bifunction 99.4 1.1E-11 2.4E-16 110.7 17.4 99 52-157 20-124 (308)
119 PRK11573 hypothetical protein; 99.4 1.8E-12 3.8E-17 120.7 12.8 123 208-334 186-309 (413)
120 TIGR00400 mgtE Mg2+ transporte 99.4 9.2E-13 2E-17 124.3 10.7 115 209-334 131-250 (449)
121 KOG1268 Glucosamine 6-phosphat 99.4 2.9E-12 6.2E-17 116.5 12.6 172 10-186 304-484 (670)
122 PRK05567 inosine 5'-monophosph 99.4 1.8E-12 4E-17 123.3 12.0 115 210-334 88-203 (486)
123 PLN02274 inosine-5'-monophosph 99.4 2.2E-12 4.8E-17 122.3 11.9 110 215-334 106-220 (505)
124 TIGR01137 cysta_beta cystathio 99.4 2.6E-12 5.6E-17 122.2 12.3 120 207-334 333-452 (454)
125 PTZ00314 inosine-5'-monophosph 99.4 1.8E-12 3.9E-17 122.9 11.1 114 211-334 98-216 (495)
126 cd04634 CBS_pair_21 The CBS do 99.4 4.8E-12 1E-16 101.0 11.9 109 221-333 3-142 (143)
127 cd04598 CBS_pair_GGDEF_assoc T 99.4 5.1E-12 1.1E-16 97.2 11.3 110 221-333 3-118 (119)
128 cd04638 CBS_pair_25 The CBS do 99.4 6.3E-12 1.4E-16 94.6 11.3 103 221-333 3-105 (106)
129 cd05015 SIS_PGI_1 Phosphogluco 99.3 1.6E-11 3.4E-16 99.4 11.7 105 41-147 5-127 (158)
130 PTZ00295 glucosamine-fructose- 99.3 3E-11 6.6E-16 119.1 16.1 154 28-193 472-629 (640)
131 COG0517 FOG: CBS domain [Gener 99.3 2.7E-11 5.9E-16 92.7 12.4 107 221-332 9-117 (117)
132 COG1253 TlyC Hemolysins and re 99.3 1.4E-11 2.9E-16 115.8 12.3 121 208-334 205-326 (429)
133 PRK14869 putative manganese-de 99.3 3.8E-11 8.2E-16 116.6 13.0 125 206-334 65-302 (546)
134 COG2103 Predicted sugar phosph 99.3 2.2E-10 4.8E-15 96.2 14.4 184 8-194 16-221 (298)
135 COG4536 CorB Putative Mg2+ and 99.2 2.7E-11 5.8E-16 106.6 8.7 123 208-334 199-322 (423)
136 COG2239 MgtE Mg/Co/Ni transpor 99.2 4.6E-11 1E-15 110.8 9.4 115 208-333 131-250 (451)
137 cd04592 CBS_pair_EriC_assoc_eu 99.2 1.5E-10 3.4E-15 91.0 10.4 97 221-319 3-118 (133)
138 COG4535 CorC Putative Mg2+ and 99.1 3.2E-10 6.9E-15 93.6 9.7 152 176-333 19-186 (293)
139 PRK10070 glycine betaine trans 99.1 3.9E-09 8.5E-14 97.7 15.9 188 115-334 201-391 (400)
140 TIGR01186 proV glycine betaine 99.0 2.2E-08 4.7E-13 91.7 17.2 103 223-334 254-356 (363)
141 PF00571 CBS: CBS domain CBS d 99.0 1.9E-09 4.1E-14 71.4 7.1 56 211-268 1-56 (57)
142 PF00571 CBS: CBS domain CBS d 98.9 2.5E-09 5.4E-14 70.8 5.0 54 279-334 1-54 (57)
143 KOG0474 Cl- channel CLC-7 and 98.9 6.9E-09 1.5E-13 96.9 7.9 123 208-334 581-745 (762)
144 KOG2550 IMP dehydrogenase/GMP 98.8 6.8E-09 1.5E-13 92.4 7.1 104 223-334 120-226 (503)
145 KOG1764 5'-AMP-activated prote 98.8 3E-08 6.5E-13 91.1 11.6 112 221-334 239-357 (381)
146 PTZ00394 glucosamine-fructose- 98.8 2.8E-07 6E-12 91.1 16.3 144 41-193 514-659 (670)
147 COG0449 GlmS Glucosamine 6-pho 98.7 1E-06 2.3E-11 83.8 15.9 158 23-193 427-586 (597)
148 TIGR01135 glmS glucosamine--fr 98.6 1.5E-06 3.2E-11 85.8 16.8 156 27-193 439-596 (607)
149 PRK00331 glucosamine--fructose 98.6 2.7E-06 5.8E-11 83.9 17.7 155 27-193 437-593 (604)
150 PF10740 DUF2529: Protein of u 98.5 6.2E-06 1.4E-10 65.7 13.9 158 23-184 4-169 (172)
151 PLN02981 glucosamine:fructose- 98.4 1E-05 2.2E-10 80.4 16.8 154 29-193 512-669 (680)
152 cd05010 SIS_AgaS_like AgaS-lik 98.4 5.6E-06 1.2E-10 66.3 12.0 129 57-193 1-137 (151)
153 PRK11382 frlB fructoselysine-6 98.3 1.9E-05 4E-10 72.3 15.0 132 41-193 196-330 (340)
154 COG2524 Predicted transcriptio 98.3 9.2E-07 2E-11 74.5 5.9 61 206-268 231-291 (294)
155 TIGR00400 mgtE Mg2+ transporte 98.3 8.9E-07 1.9E-11 83.9 5.8 96 210-316 196-291 (449)
156 KOG0475 Cl- channel CLC-3 and 98.3 6.1E-06 1.3E-10 77.8 10.4 125 207-334 544-693 (696)
157 cd04603 CBS_pair_KefB_assoc Th 98.3 1.8E-06 3.9E-11 65.3 5.4 54 210-265 57-110 (111)
158 COG2222 AgaS Predicted phospho 98.2 3.4E-05 7.3E-10 69.8 14.3 136 41-191 189-326 (340)
159 PRK03868 glucose-6-phosphate i 98.2 9.1E-06 2E-10 75.6 10.8 112 43-156 45-176 (410)
160 cd04597 CBS_pair_DRTGG_assoc2 98.2 4.3E-06 9.2E-11 63.6 6.9 56 208-265 57-112 (113)
161 cd04597 CBS_pair_DRTGG_assoc2 98.2 5.4E-06 1.2E-10 63.0 6.2 55 277-333 58-112 (113)
162 PRK14869 putative manganese-de 98.1 6.7E-07 1.5E-11 87.1 0.4 120 210-334 247-391 (546)
163 PRK00973 glucose-6-phosphate i 98.1 2E-05 4.4E-10 73.9 10.1 113 42-155 60-198 (446)
164 cd04619 CBS_pair_6 The CBS dom 98.1 7.8E-06 1.7E-10 62.1 5.6 55 209-265 59-113 (114)
165 TIGR02815 agaS_fam putative su 98.0 0.00023 5E-09 65.8 15.8 144 42-193 201-353 (372)
166 PRK14096 pgi glucose-6-phospha 98.0 4.4E-05 9.6E-10 72.6 11.0 113 41-155 92-234 (528)
167 PRK09533 bifunctional transald 98.0 1.7E-05 3.6E-10 80.3 8.6 106 41-147 441-561 (948)
168 COG3448 CBS-domain-containing 98.0 7.7E-06 1.7E-10 70.3 4.7 98 223-334 198-300 (382)
169 cd04607 CBS_pair_NTP_transfera 97.9 1.8E-05 4E-10 59.8 5.6 54 210-265 59-112 (113)
170 cd04617 CBS_pair_4 The CBS dom 97.9 1.6E-05 3.5E-10 60.7 5.0 56 210-265 59-117 (118)
171 cd04801 CBS_pair_M50_like This 97.9 1.4E-05 3.1E-10 60.4 4.5 56 210-265 58-113 (114)
172 COG3620 Predicted transcriptio 97.9 1.8E-05 3.9E-10 61.9 4.8 57 276-335 64-120 (187)
173 cd04627 CBS_pair_14 The CBS do 97.9 3.2E-05 6.9E-10 59.5 6.2 52 212-265 71-122 (123)
174 cd04618 CBS_pair_5 The CBS dom 97.9 2E-05 4.3E-10 58.3 4.6 45 221-265 52-97 (98)
175 cd04620 CBS_pair_7 The CBS dom 97.9 2.8E-05 6.1E-10 58.9 5.6 54 210-265 59-114 (115)
176 cd04600 CBS_pair_HPP_assoc Thi 97.9 3E-05 6.6E-10 59.5 5.7 55 209-265 69-123 (124)
177 cd04606 CBS_pair_Mg_transporte 97.9 3.4E-05 7.4E-10 57.9 5.8 56 209-266 53-108 (109)
178 KOG1764 5'-AMP-activated prote 97.8 0.0001 2.2E-09 68.0 9.5 111 221-333 164-283 (381)
179 cd04640 CBS_pair_27 The CBS do 97.8 3.2E-05 6.9E-10 59.8 5.2 57 209-265 64-125 (126)
180 TIGR03415 ABC_choXWV_ATP choli 97.8 0.00011 2.4E-09 67.9 9.4 176 115-334 201-378 (382)
181 cd04604 CBS_pair_KpsF_GutQ_ass 97.8 4.6E-05 9.9E-10 57.5 5.9 54 210-265 60-113 (114)
182 cd04610 CBS_pair_ParBc_assoc T 97.8 4.7E-05 1E-09 56.7 5.9 54 210-265 53-106 (107)
183 cd04596 CBS_pair_DRTGG_assoc T 97.8 4.7E-05 1E-09 57.0 5.8 54 210-265 54-107 (108)
184 cd04639 CBS_pair_26 The CBS do 97.8 5.3E-05 1.1E-09 56.9 5.9 54 210-265 57-110 (111)
185 cd04602 CBS_pair_IMPDH_2 This 97.8 4.4E-05 9.6E-10 57.8 5.5 54 210-265 58-113 (114)
186 cd04583 CBS_pair_ABC_OpuCA_ass 97.8 5E-05 1.1E-09 56.8 5.7 54 210-265 55-108 (109)
187 PRK07107 inosine 5-monophospha 97.8 4.2E-05 9.1E-10 73.0 6.4 59 209-267 161-219 (502)
188 cd04585 CBS_pair_ACT_assoc2 Th 97.8 5.3E-05 1.2E-09 57.8 5.9 55 209-265 67-121 (122)
189 cd04630 CBS_pair_17 The CBS do 97.8 5E-05 1.1E-09 57.5 5.6 54 209-265 60-113 (114)
190 cd04641 CBS_pair_28 The CBS do 97.8 5.2E-05 1.1E-09 58.0 5.7 52 212-265 68-119 (120)
191 PRK05567 inosine 5'-monophosph 97.8 6E-05 1.3E-09 72.2 7.2 114 210-334 148-265 (486)
192 cd04582 CBS_pair_ABC_OpuCA_ass 97.8 6.1E-05 1.3E-09 56.1 5.8 53 211-265 53-105 (106)
193 smart00116 CBS Domain in cysta 97.8 7.6E-05 1.6E-09 46.4 5.4 47 221-267 2-48 (49)
194 cd04615 CBS_pair_2 The CBS dom 97.8 6.1E-05 1.3E-09 56.8 5.6 54 210-265 59-112 (113)
195 cd04611 CBS_pair_PAS_GGDEF_DUF 97.7 7.3E-05 1.6E-09 56.1 6.0 54 210-265 57-110 (111)
196 cd04587 CBS_pair_CAP-ED_DUF294 97.7 5E-05 1.1E-09 57.2 5.0 54 210-265 59-112 (113)
197 cd04625 CBS_pair_12 The CBS do 97.7 6.4E-05 1.4E-09 56.5 5.6 53 210-265 59-111 (112)
198 PRK14095 pgi glucose-6-phospha 97.7 0.00068 1.5E-08 64.8 13.5 106 41-148 129-258 (533)
199 smart00116 CBS Domain in cysta 97.7 7.1E-05 1.5E-09 46.5 4.8 46 287-334 2-47 (49)
200 cd04635 CBS_pair_22 The CBS do 97.7 8.1E-05 1.8E-09 56.9 5.7 55 209-265 67-121 (122)
201 PRK07807 inosine 5-monophospha 97.7 0.00018 4E-09 68.3 9.1 58 210-269 149-206 (479)
202 cd04614 CBS_pair_1 The CBS dom 97.7 7.9E-05 1.7E-09 54.7 5.3 45 221-265 51-95 (96)
203 cd04631 CBS_pair_18 The CBS do 97.7 8.6E-05 1.9E-09 57.0 5.8 55 209-265 70-124 (125)
204 cd04593 CBS_pair_EriC_assoc_ba 97.7 9.1E-05 2E-09 56.1 5.8 53 211-265 60-114 (115)
205 TIGR01303 IMP_DH_rel_1 IMP deh 97.7 0.00026 5.6E-09 67.2 9.9 58 210-269 147-204 (475)
206 cd04803 CBS_pair_15 The CBS do 97.7 9.3E-05 2E-09 56.6 5.8 56 208-265 66-121 (122)
207 cd04590 CBS_pair_CorC_HlyC_ass 97.7 8.9E-05 1.9E-09 55.7 5.5 53 210-265 58-110 (111)
208 cd04621 CBS_pair_8 The CBS dom 97.7 0.00011 2.3E-09 57.8 6.1 55 208-265 80-134 (135)
209 cd04588 CBS_pair_CAP-ED_DUF294 97.7 0.0001 2.3E-09 55.2 5.8 54 210-265 56-109 (110)
210 cd04599 CBS_pair_GGDEF_assoc2 97.7 9.1E-05 2E-09 54.9 5.4 51 211-264 53-103 (105)
211 PLN02274 inosine-5'-monophosph 97.7 0.0001 2.2E-09 70.6 6.9 62 208-269 162-223 (505)
212 cd04637 CBS_pair_24 The CBS do 97.7 0.00012 2.5E-09 56.1 6.0 56 208-265 66-121 (122)
213 cd04623 CBS_pair_10 The CBS do 97.7 8.8E-05 1.9E-09 55.7 5.3 54 209-265 59-112 (113)
214 cd04622 CBS_pair_9 The CBS dom 97.7 0.00012 2.6E-09 55.1 5.9 54 210-265 59-112 (113)
215 cd04586 CBS_pair_BON_assoc Thi 97.6 6.6E-05 1.4E-09 58.8 4.4 54 209-265 81-134 (135)
216 cd04601 CBS_pair_IMPDH This cd 97.6 0.00011 2.4E-09 54.9 5.5 54 210-265 55-109 (110)
217 cd04595 CBS_pair_DHH_polyA_Pol 97.6 0.00011 2.4E-09 55.1 5.4 53 210-265 57-109 (110)
218 cd04592 CBS_pair_EriC_assoc_eu 97.6 0.00014 3E-09 57.1 5.8 47 286-334 2-48 (133)
219 cd04800 CBS_pair_CAP-ED_DUF294 97.6 0.00012 2.6E-09 54.9 5.4 53 210-265 58-110 (111)
220 cd04613 CBS_pair_SpoIVFB_EriC_ 97.6 0.00014 3E-09 54.8 5.7 55 209-265 58-113 (114)
221 cd04626 CBS_pair_13 The CBS do 97.6 0.00011 2.5E-09 55.1 5.2 53 210-265 58-110 (111)
222 cd04605 CBS_pair_MET2_assoc Th 97.6 0.00019 4E-09 53.8 6.3 53 211-265 57-109 (110)
223 cd04643 CBS_pair_30 The CBS do 97.6 0.00012 2.6E-09 55.4 5.2 52 210-265 64-115 (116)
224 PRK11543 gutQ D-arabinose 5-ph 97.6 0.00013 2.8E-09 66.3 6.2 55 209-265 263-317 (321)
225 cd04594 CBS_pair_EriC_assoc_ar 97.6 0.00016 3.4E-09 53.8 5.7 52 211-265 52-103 (104)
226 cd04612 CBS_pair_SpoIVFB_EriC_ 97.6 0.00017 3.7E-09 54.0 5.9 55 209-265 56-110 (111)
227 cd04589 CBS_pair_CAP-ED_DUF294 97.6 0.00012 2.7E-09 54.9 5.1 53 210-265 58-110 (111)
228 cd04624 CBS_pair_11 The CBS do 97.6 0.00017 3.7E-09 54.2 5.8 54 210-265 58-111 (112)
229 COG0166 Pgi Glucose-6-phosphat 97.6 0.00091 2E-08 62.7 11.3 103 55-157 80-199 (446)
230 cd04629 CBS_pair_16 The CBS do 97.5 0.00012 2.5E-09 55.3 4.5 53 210-265 61-113 (114)
231 cd04642 CBS_pair_29 The CBS do 97.5 0.00021 4.6E-09 55.1 5.9 50 214-265 76-125 (126)
232 cd04802 CBS_pair_3 The CBS dom 97.5 0.0002 4.3E-09 53.8 5.5 53 210-265 59-111 (112)
233 PRK15094 magnesium/cobalt effl 97.5 0.00042 9.1E-09 61.8 8.3 90 211-304 135-228 (292)
234 cd04636 CBS_pair_23 The CBS do 97.5 0.00018 4E-09 56.0 5.3 53 210-265 79-131 (132)
235 cd04633 CBS_pair_20 The CBS do 97.5 0.00014 3.1E-09 55.5 4.4 54 209-265 67-120 (121)
236 cd04608 CBS_pair_PALP_assoc Th 97.5 0.00027 5.9E-09 54.5 6.0 47 285-333 2-48 (124)
237 PRK10892 D-arabinose 5-phospha 97.5 0.00024 5.2E-09 64.6 6.1 56 276-333 201-258 (326)
238 COG4109 Predicted transcriptio 97.4 0.00024 5.2E-09 62.8 5.6 64 204-269 244-307 (432)
239 PTZ00314 inosine-5'-monophosph 97.4 0.00059 1.3E-08 65.3 8.4 60 209-268 159-218 (495)
240 cd04584 CBS_pair_ACT_assoc Thi 97.4 0.00035 7.7E-09 53.2 5.4 54 209-265 67-120 (121)
241 cd04591 CBS_pair_EriC_assoc_eu 97.3 0.0004 8.7E-09 51.8 5.2 49 214-265 56-104 (105)
242 cd04632 CBS_pair_19 The CBS do 97.3 0.00046 1E-08 53.3 5.7 55 209-265 71-127 (128)
243 TIGR00393 kpsF KpsF/GutQ famil 97.3 0.00045 9.7E-09 61.0 6.0 56 277-334 155-211 (268)
244 PRK01862 putative voltage-gate 97.3 0.00052 1.1E-08 67.4 6.8 58 210-269 513-572 (574)
245 COG4175 ProV ABC-type proline/ 97.3 0.0004 8.6E-09 61.1 5.2 108 209-334 274-381 (386)
246 COG0517 FOG: CBS domain [Gener 97.3 0.00059 1.3E-08 51.5 5.6 52 210-263 63-116 (117)
247 PRK14097 pgi glucose-6-phospha 97.3 0.0044 9.5E-08 58.5 12.3 114 44-157 63-205 (448)
248 cd02205 CBS_pair The CBS domai 97.2 0.00095 2.1E-08 49.5 6.0 53 211-265 60-112 (113)
249 cd04598 CBS_pair_GGDEF_assoc T 97.2 0.0007 1.5E-08 51.4 5.2 54 210-265 62-118 (119)
250 TIGR03520 GldE gliding motilit 97.2 0.0014 3E-08 61.4 8.0 93 210-306 256-351 (408)
251 TIGR01137 cysta_beta cystathio 97.2 0.00074 1.6E-08 64.4 6.2 56 276-333 334-389 (454)
252 cd04634 CBS_pair_21 The CBS do 97.1 0.00088 1.9E-08 53.0 5.5 55 208-265 88-142 (143)
253 cd04638 CBS_pair_25 The CBS do 97.1 0.0012 2.6E-08 49.0 5.8 52 211-265 54-105 (106)
254 TIGR01302 IMP_dehydrog inosine 97.0 0.0012 2.5E-08 62.7 5.7 58 210-268 144-201 (450)
255 cd04609 CBS_pair_PALP_assoc2 T 97.0 0.0016 3.4E-08 48.5 5.2 46 286-334 2-47 (110)
256 COG2905 Predicted signal-trans 96.9 0.0016 3.6E-08 61.3 5.5 62 205-269 210-271 (610)
257 TIGR01012 Sa_S2_E_A ribosomal 96.9 0.051 1.1E-06 45.2 13.6 114 55-188 62-177 (196)
258 COG2239 MgtE Mg/Co/Ni transpor 96.9 0.0037 8.1E-08 58.7 7.6 62 207-270 194-255 (451)
259 TIGR01186 proV glycine betaine 96.8 0.0034 7.3E-08 57.8 6.9 56 211-269 304-359 (363)
260 PRK04020 rps2P 30S ribosomal p 96.7 0.099 2.1E-06 43.8 14.3 127 43-188 55-183 (204)
261 PF00342 PGI: Phosphoglucose i 96.6 0.013 2.9E-07 55.9 9.7 101 55-155 97-216 (486)
262 PTZ00254 40S ribosomal protein 96.6 0.068 1.5E-06 46.0 12.8 119 50-188 68-187 (249)
263 PRK00179 pgi glucose-6-phospha 96.6 0.03 6.4E-07 54.1 11.6 114 41-156 123-266 (548)
264 PLN02649 glucose-6-phosphate i 96.4 0.019 4.1E-07 55.5 9.2 113 41-156 125-272 (560)
265 PTZ00430 glucose-6-phosphate i 96.2 0.031 6.7E-07 54.0 9.5 97 41-138 120-248 (552)
266 cd01425 RPS2 Ribosomal protein 96.2 0.22 4.7E-06 41.6 13.5 67 99-183 125-191 (193)
267 PRK10070 glycine betaine trans 96.2 0.016 3.4E-07 54.1 7.1 57 211-270 339-395 (400)
268 KOG0476 Cl- channel CLC-2 and 96.1 0.041 8.8E-07 53.8 9.7 97 170-268 541-647 (931)
269 PRK05299 rpsB 30S ribosomal pr 95.8 0.23 5E-06 43.4 12.3 71 100-188 156-226 (258)
270 cd02767 MopB_ydeP The MopB_yde 95.7 0.2 4.4E-06 49.2 12.7 117 41-157 85-237 (574)
271 PRK11573 hypothetical protein; 95.4 0.058 1.3E-06 50.7 7.8 91 211-304 257-350 (413)
272 TIGR00315 cdhB CO dehydrogenas 95.4 0.22 4.7E-06 40.1 9.9 102 44-151 18-145 (162)
273 TIGR01011 rpsB_bact ribosomal 95.4 0.81 1.7E-05 39.2 13.9 70 100-187 154-223 (225)
274 PRK12311 rpsB 30S ribosomal pr 95.3 0.36 7.7E-06 43.5 12.0 69 101-187 152-220 (326)
275 TIGR01701 Fdhalpha-like oxidor 95.2 0.43 9.3E-06 48.5 13.5 117 41-157 120-273 (743)
276 KOG1268 Glucosamine 6-phosphat 95.1 1 2.3E-05 42.6 14.5 142 41-191 514-657 (670)
277 COG0052 RpsB Ribosomal protein 95.1 0.45 9.8E-06 40.7 11.3 69 102-188 157-225 (252)
278 CHL00067 rps2 ribosomal protei 95.1 0.99 2.1E-05 38.8 13.6 68 100-185 160-227 (230)
279 COG1253 TlyC Hemolysins and re 95.0 0.11 2.3E-06 49.2 8.0 84 221-305 281-368 (429)
280 PRK09939 putative oxidoreducta 94.6 0.5 1.1E-05 48.0 12.2 116 41-157 129-283 (759)
281 KOG2550 IMP dehydrogenase/GMP 94.5 0.13 2.8E-06 47.0 6.8 58 208-267 170-227 (503)
282 KOG0474 Cl- channel CLC-7 and 94.2 0.14 3.1E-06 49.2 6.9 55 211-267 692-746 (762)
283 PF00318 Ribosomal_S2: Ribosom 93.8 2.2 4.7E-05 36.2 12.8 66 102-185 144-209 (211)
284 COG1125 OpuBA ABC-type proline 93.4 0.39 8.4E-06 41.5 7.4 124 122-266 180-308 (309)
285 COG4536 CorB Putative Mg2+ and 93.4 0.42 9.1E-06 43.4 7.9 92 212-303 268-361 (423)
286 COG1125 OpuBA ABC-type proline 93.2 0.66 1.4E-05 40.2 8.4 89 243-334 204-308 (309)
287 PF10087 DUF2325: Uncharacteri 92.7 0.88 1.9E-05 33.2 7.6 83 56-140 1-87 (97)
288 PRK00945 acetyl-CoA decarbonyl 92.2 1.4 3E-05 35.9 8.8 102 44-151 25-153 (171)
289 KOG2118 Predicted membrane pro 92.2 0.28 6.1E-06 47.1 5.6 120 208-331 203-324 (498)
290 TIGR01553 formate-DH-alph form 92.1 2.1 4.6E-05 45.0 12.3 85 99-200 219-305 (1009)
291 TIGR03415 ABC_choXWV_ATP choli 91.8 0.4 8.6E-06 44.6 5.9 46 221-268 335-380 (382)
292 TIGR01591 Fdh-alpha formate de 90.6 3.6 7.8E-05 41.4 12.0 58 99-157 153-212 (671)
293 cd02753 MopB_Formate-Dh-H Form 90.5 5.6 0.00012 38.6 12.8 58 99-157 154-213 (512)
294 cd02759 MopB_Acetylene-hydrata 90.4 6.7 0.00015 37.7 13.1 59 98-157 157-218 (477)
295 PF01936 NYN: NYN domain; Int 90.2 1.7 3.8E-05 33.9 7.6 107 42-152 21-145 (146)
296 TIGR00288 conserved hypothetic 90.1 3.7 8E-05 33.0 9.2 82 71-155 70-158 (160)
297 cd02754 MopB_Nitrate-R-NapA-li 89.9 6.8 0.00015 38.5 13.1 58 99-157 155-216 (565)
298 cd02750 MopB_Nitrate-R-NarG-li 89.8 6.7 0.00014 37.5 12.5 58 99-157 168-227 (461)
299 PRK13532 nitrate reductase cat 89.7 5.4 0.00012 41.3 12.6 85 99-200 204-292 (830)
300 cd02755 MopB_Thiosulfate-R-lik 89.6 8.8 0.00019 36.6 13.2 59 98-157 153-214 (454)
301 cd02762 MopB_1 The MopB_1 CD i 89.4 9.9 0.00022 37.2 13.7 59 98-157 153-219 (539)
302 COG4015 Predicted dinucleotide 88.8 1.6 3.4E-05 34.9 6.0 34 100-133 105-139 (217)
303 cd02766 MopB_3 The MopB_3 CD i 88.8 7.3 0.00016 37.8 12.1 58 99-157 155-214 (501)
304 cd02752 MopB_Formate-Dh-Na-lik 88.3 6.4 0.00014 39.4 11.5 59 98-157 166-227 (649)
305 KOG2446 Glucose-6-phosphate is 88.3 2.3 5E-05 39.4 7.6 86 41-126 128-228 (546)
306 KOG0475 Cl- channel CLC-3 and 88.2 0.93 2E-05 43.9 5.3 64 201-267 631-694 (696)
307 PF13793 Pribosyltran_N: N-ter 88.2 4.3 9.4E-05 30.8 8.0 79 58-136 2-87 (116)
308 TIGR03479 DMSO_red_II_alp DMSO 88.2 7.6 0.00016 40.7 12.4 58 99-157 222-281 (912)
309 PRK06702 O-acetylhomoserine am 88.0 7.8 0.00017 36.8 11.4 112 41-155 64-208 (432)
310 cd02765 MopB_4 The MopB_4 CD i 87.8 9.4 0.0002 37.6 12.4 85 99-200 157-243 (567)
311 COG4535 CorC Putative Mg2+ and 87.6 1.6 3.4E-05 37.2 5.7 93 210-306 134-230 (293)
312 cd06167 LabA_like LabA_like pr 87.2 7.2 0.00016 30.6 9.3 104 41-147 24-144 (149)
313 cd02770 MopB_DmsA-EC This CD ( 87.0 3.6 7.7E-05 41.0 9.0 58 99-157 164-227 (617)
314 cd02763 MopB_2 The MopB_2 CD i 87.0 11 0.00024 38.0 12.3 58 99-157 153-212 (679)
315 PRK07860 NADH dehydrogenase su 86.5 6.9 0.00015 40.3 10.9 117 41-157 298-435 (797)
316 cd02761 MopB_FmdB-FwdB The Mop 86.4 5.4 0.00012 37.4 9.5 119 37-157 53-196 (415)
317 KOG0832 Mitochondrial/chloropl 86.1 20 0.00044 30.5 12.3 68 102-187 174-241 (251)
318 TIGR01706 NAPA periplasmic nit 86.0 12 0.00026 38.8 12.4 83 99-198 204-290 (830)
319 smart00642 Aamy Alpha-amylase 85.9 3.2 6.9E-05 33.7 6.6 78 63-141 16-97 (166)
320 TIGR02166 dmsA_ynfE anaerobic 85.8 5.5 0.00012 41.1 9.8 59 99-157 212-276 (797)
321 cd01410 SIRT7 SIRT7: Eukaryoti 84.6 2.8 6.2E-05 35.3 6.0 53 98-151 152-204 (206)
322 COG4175 ProV ABC-type proline/ 84.1 2.5 5.5E-05 37.9 5.5 47 221-268 337-383 (386)
323 PF08484 Methyltransf_14: C-me 84.0 6.1 0.00013 31.8 7.4 92 41-133 55-157 (160)
324 cd01409 SIRT4 SIRT4: Eukaryoti 83.9 2.6 5.5E-05 37.0 5.6 57 98-155 201-257 (260)
325 cd02757 MopB_Arsenate-R This C 83.6 18 0.00038 35.3 11.8 59 98-157 159-221 (523)
326 cd01413 SIR2_Af2 SIR2_Af2: Arc 83.5 2.8 6E-05 35.8 5.5 53 98-151 168-220 (222)
327 TIGR01973 NuoG NADH-quinone ox 82.3 14 0.00031 36.7 10.8 120 36-157 284-420 (603)
328 PRK07199 phosphoribosylpyropho 81.6 10 0.00022 34.1 8.6 80 57-136 3-88 (301)
329 PRK00553 ribose-phosphate pyro 81.2 9.3 0.0002 34.8 8.3 82 55-136 8-96 (332)
330 PRK14138 NAD-dependent deacety 81.2 2.8 6.1E-05 36.4 4.8 57 98-155 175-231 (244)
331 PRK09271 flavodoxin; Provision 81.1 22 0.00047 28.5 9.7 70 57-126 4-80 (160)
332 PRK02458 ribose-phosphate pyro 80.9 13 0.00028 33.8 9.0 82 55-136 8-96 (323)
333 cd02760 MopB_Phenylacetyl-CoA- 80.8 25 0.00055 36.0 12.0 58 99-157 171-231 (760)
334 PRK15488 thiosulfate reductase 80.7 33 0.00072 35.1 13.1 59 98-157 193-255 (759)
335 PRK01710 murD UDP-N-acetylmura 80.5 11 0.00025 35.9 9.1 84 41-132 3-105 (458)
336 TIGR03590 PseG pseudaminic aci 80.2 26 0.00057 30.9 10.8 99 45-154 22-127 (279)
337 TIGR01754 flav_RNR ribonucleot 80.1 16 0.00035 28.4 8.5 75 57-131 4-84 (140)
338 COG1832 Predicted CoA-binding 80.1 22 0.00048 27.7 8.6 87 43-133 6-102 (140)
339 PTZ00409 Sir2 (Silent Informat 80.1 4.3 9.3E-05 35.8 5.6 57 98-155 196-253 (271)
340 COG1029 FwdB Formylmethanofura 79.8 15 0.00032 33.5 8.6 131 41-187 67-220 (429)
341 cd02768 MopB_NADH-Q-OR-NuoG2 M 79.7 18 0.00039 33.5 10.0 111 41-154 73-201 (386)
342 PF00384 Molybdopterin: Molybd 79.6 31 0.00067 32.4 11.7 59 98-157 108-169 (432)
343 PRK03806 murD UDP-N-acetylmura 79.6 7.3 0.00016 37.0 7.4 72 55-132 7-93 (438)
344 TIGR01470 cysG_Nterm siroheme 79.3 37 0.00079 28.6 12.1 100 55-157 10-128 (205)
345 PRK04923 ribose-phosphate pyro 79.3 16 0.00034 33.2 9.0 82 55-136 5-93 (319)
346 PRK05613 O-acetylhomoserine am 79.0 15 0.00033 34.9 9.3 79 75-153 128-214 (437)
347 PRK05562 precorrin-2 dehydroge 78.9 40 0.00087 28.8 12.9 100 55-157 26-144 (223)
348 TIGR03129 one_C_dehyd_B formyl 78.8 15 0.00032 34.5 9.3 120 36-157 58-202 (421)
349 PF10432 bact-PGI_C: Bacterial 78.5 14 0.0003 29.6 7.6 125 43-193 8-143 (155)
350 PRK11388 DNA-binding transcrip 78.4 9.1 0.0002 38.3 8.0 93 230-328 61-163 (638)
351 TIGR01580 narG respiratory nit 78.1 38 0.00082 36.4 12.3 56 101-157 245-302 (1235)
352 cd00368 Molybdopterin-Binding 77.5 16 0.00035 33.6 9.0 58 99-157 154-213 (374)
353 TIGR00853 pts-lac PTS system, 77.2 12 0.00027 27.1 6.4 82 56-142 5-89 (95)
354 PF02590 SPOUT_MTase: Predicte 76.8 37 0.00079 27.2 11.1 124 56-188 4-151 (155)
355 COG0626 MetC Cystathionine bet 76.4 38 0.00082 31.7 10.8 112 41-154 66-209 (396)
356 KOG0476 Cl- channel CLC-2 and 76.4 1.7 3.7E-05 43.1 2.1 56 276-333 587-644 (931)
357 PRK00934 ribose-phosphate pyro 76.2 18 0.00039 32.2 8.5 78 59-136 2-85 (285)
358 PF01053 Cys_Met_Meta_PP: Cys/ 76.0 18 0.00038 33.8 8.7 77 76-154 115-201 (386)
359 PRK02812 ribose-phosphate pyro 75.9 17 0.00037 33.1 8.3 85 51-136 17-108 (330)
360 COG0462 PrsA Phosphoribosylpyr 75.3 23 0.00049 31.9 8.6 81 55-135 3-89 (314)
361 PRK08493 NADH dehydrogenase su 74.8 52 0.0011 34.0 12.2 115 40-157 297-431 (819)
362 PTZ00445 p36-lilke protein; Pr 74.4 17 0.00037 30.7 7.2 76 64-141 26-104 (219)
363 PTZ00408 NAD-dependent deacety 74.3 7.3 0.00016 33.8 5.3 53 99-152 170-222 (242)
364 PLN02297 ribose-phosphate pyro 74.1 25 0.00055 31.9 8.9 82 55-137 15-105 (326)
365 PRK08335 translation initiatio 74.1 29 0.00062 30.7 9.0 38 115-152 147-184 (275)
366 PTZ00145 phosphoribosylpyropho 74.0 23 0.00051 33.5 8.8 82 55-136 118-206 (439)
367 COG2984 ABC-type uncharacteriz 73.6 19 0.00041 32.4 7.7 90 43-133 145-244 (322)
368 PF05198 IF3_N: Translation in 73.5 6.2 0.00013 27.4 3.8 46 103-148 13-61 (76)
369 PRK07812 O-acetylhomoserine am 73.2 30 0.00065 32.9 9.6 52 99-152 152-213 (436)
370 PRK08105 flavodoxin; Provision 73.1 16 0.00035 29.0 6.7 69 57-127 5-78 (149)
371 PF00205 TPP_enzyme_M: Thiamin 73.0 12 0.00026 29.0 5.9 47 43-89 1-48 (137)
372 COG0529 CysC Adenylylsulfate k 72.9 12 0.00027 30.7 5.8 78 51-136 21-101 (197)
373 PRK09435 membrane ATPase/prote 72.6 50 0.0011 30.1 10.4 138 16-153 9-177 (332)
374 cd03109 DTBS Dethiobiotin synt 72.6 17 0.00037 28.1 6.6 75 57-141 3-81 (134)
375 PRK01390 murD UDP-N-acetylmura 72.1 17 0.00038 34.7 7.9 30 55-87 10-39 (460)
376 COG3981 Predicted acetyltransf 72.1 4.8 0.0001 32.5 3.3 34 111-144 112-146 (174)
377 cd05565 PTS_IIB_lactose PTS_II 72.0 19 0.00041 26.4 6.3 75 58-137 5-81 (99)
378 PRK08134 O-acetylhomoserine am 71.8 37 0.0008 32.2 9.9 52 99-152 146-207 (433)
379 PRK11070 ssDNA exonuclease Rec 71.6 1.1E+02 0.0024 30.3 13.4 136 41-183 53-204 (575)
380 PF01008 IF-2B: Initiation fac 71.1 21 0.00045 31.6 7.7 41 114-154 144-185 (282)
381 cd01407 SIR2-fam SIR2 family o 70.9 12 0.00026 31.8 5.8 53 98-151 164-216 (218)
382 TIGR00644 recJ single-stranded 70.2 1.1E+02 0.0025 29.9 15.7 93 41-138 42-144 (539)
383 PRK02269 ribose-phosphate pyro 69.9 31 0.00067 31.3 8.5 81 56-136 5-92 (320)
384 PRK09590 celB cellobiose phosp 69.2 17 0.00037 26.9 5.6 83 57-142 5-89 (104)
385 PRK05723 flavodoxin; Provision 69.1 14 0.00031 29.3 5.5 69 57-127 4-77 (151)
386 PRK00683 murD UDP-N-acetylmura 68.6 13 0.00028 35.1 6.0 72 55-132 4-87 (418)
387 PF09897 DUF2124: Uncharacteri 68.1 12 0.00026 29.5 4.6 37 51-88 17-54 (147)
388 PF00128 Alpha-amylase: Alpha 68.1 7.3 0.00016 34.5 4.2 65 68-133 6-70 (316)
389 PF05991 NYN_YacP: YacP-like N 68.1 27 0.00059 28.2 7.1 68 70-137 33-103 (166)
390 PF13604 AAA_30: AAA domain; P 68.1 19 0.00042 29.9 6.4 34 105-138 96-131 (196)
391 TIGR00509 bisC_fam molybdopter 67.3 24 0.00052 36.2 8.1 58 99-157 165-233 (770)
392 PF00289 CPSase_L_chain: Carba 66.9 5.4 0.00012 29.9 2.5 47 107-155 6-54 (110)
393 PF13380 CoA_binding_2: CoA bi 66.8 40 0.00086 25.4 7.3 80 55-137 1-88 (116)
394 PRK06703 flavodoxin; Provision 66.8 43 0.00093 26.3 8.0 66 57-125 7-76 (151)
395 PRK01259 ribose-phosphate pyro 66.7 36 0.00079 30.7 8.3 78 59-136 3-87 (309)
396 KOG0053 Cystathionine beta-lya 66.6 53 0.0012 30.7 9.3 106 44-154 106-222 (409)
397 PF00070 Pyr_redox: Pyridine n 66.4 29 0.00062 23.9 6.1 58 56-133 1-59 (80)
398 COG0608 RecJ Single-stranded D 66.3 1.3E+02 0.0028 29.1 14.1 101 41-147 20-130 (491)
399 cd02067 B12-binding B12 bindin 65.9 45 0.00098 24.9 7.6 70 69-140 16-92 (119)
400 KOG1185 Thiamine pyrophosphate 65.8 29 0.00063 33.0 7.4 90 39-145 203-293 (571)
401 COG0290 InfC Translation initi 65.7 12 0.00026 30.2 4.3 45 105-149 21-68 (176)
402 PRK06827 phosphoribosylpyropho 65.7 48 0.001 30.9 8.9 81 55-136 7-130 (382)
403 PF06283 ThuA: Trehalose utili 65.6 66 0.0014 27.1 9.4 67 67-135 19-88 (217)
404 PF02698 DUF218: DUF218 domain 65.6 42 0.00091 26.4 7.8 80 39-138 22-108 (155)
405 PF03853 YjeF_N: YjeF-related 65.5 66 0.0014 26.0 8.9 79 55-152 27-106 (169)
406 PRK06756 flavodoxin; Provision 65.4 37 0.00081 26.6 7.3 67 57-125 7-77 (148)
407 TIGR02403 trehalose_treC alpha 65.1 22 0.00047 34.9 7.0 72 61-133 22-93 (543)
408 COG1184 GCD2 Translation initi 64.8 44 0.00095 29.9 8.1 51 104-154 146-196 (301)
409 COG1029 FwdB Formylmethanofura 64.5 1.1E+02 0.0023 28.2 10.4 115 36-154 228-384 (429)
410 PF13344 Hydrolase_6: Haloacid 64.3 6.5 0.00014 28.9 2.5 36 114-149 16-51 (101)
411 cd02764 MopB_PHLH The MopB_PHL 64.2 1.2E+02 0.0025 29.6 11.9 59 98-157 193-261 (524)
412 TIGR01753 flav_short flavodoxi 63.9 59 0.0013 24.8 8.2 67 57-126 4-75 (140)
413 PF04084 ORC2: Origin recognit 63.9 22 0.00049 32.3 6.4 78 11-89 12-91 (326)
414 PF13241 NAD_binding_7: Putati 63.8 28 0.00061 25.5 5.9 78 55-137 8-94 (103)
415 COG2179 Predicted hydrolase of 63.7 14 0.0003 29.9 4.3 55 103-157 37-94 (175)
416 PF12724 Flavodoxin_5: Flavodo 63.5 61 0.0013 25.3 8.2 76 57-136 3-83 (143)
417 cd05564 PTS_IIB_chitobiose_lic 63.2 37 0.00081 24.6 6.4 80 57-141 3-84 (96)
418 TIGR01251 ribP_PPkin ribose-ph 63.0 44 0.00096 30.1 8.1 78 59-136 3-88 (308)
419 PRK06242 flavodoxin; Provision 63.0 51 0.0011 25.7 7.7 73 57-137 6-83 (150)
420 cd01408 SIRT1 SIRT1: Eukaryoti 62.9 16 0.00035 31.5 5.1 56 98-155 172-229 (235)
421 cd02751 MopB_DMSOR-like The Mo 62.9 32 0.0007 34.2 7.9 55 102-157 170-235 (609)
422 PRK05568 flavodoxin; Provision 62.9 62 0.0013 25.0 8.1 78 56-136 6-90 (142)
423 cd02766 MopB_3 The MopB_3 CD i 62.6 1.2E+02 0.0027 29.3 11.7 113 37-157 263-385 (501)
424 PRK04148 hypothetical protein; 62.2 73 0.0016 24.8 9.5 84 55-142 18-116 (134)
425 PRK05569 flavodoxin; Provision 61.9 36 0.00079 26.3 6.6 76 57-135 7-90 (141)
426 PRK08727 hypothetical protein; 61.8 31 0.00068 29.5 6.7 88 55-142 42-140 (233)
427 PRK04690 murD UDP-N-acetylmura 61.4 25 0.00053 33.8 6.6 30 55-87 9-38 (468)
428 cd02769 MopB_DMSOR-BSOR-TMAOR 61.2 38 0.00082 33.8 8.0 57 100-157 169-237 (609)
429 PF01113 DapB_N: Dihydrodipico 61.1 30 0.00066 26.3 5.9 34 99-135 65-98 (124)
430 COG1105 FruK Fructose-1-phosph 60.7 85 0.0018 28.3 9.2 116 38-153 111-239 (310)
431 PRK00481 NAD-dependent deacety 60.0 21 0.00047 30.8 5.4 55 99-154 175-229 (242)
432 PRK02705 murD UDP-N-acetylmura 60.0 23 0.0005 33.7 6.2 29 56-87 2-30 (459)
433 TIGR00215 lpxB lipid-A-disacch 59.8 23 0.0005 33.0 5.9 49 101-152 89-145 (385)
434 cd02773 MopB_Res-Cmplx1_Nad11 59.6 60 0.0013 30.0 8.7 106 41-147 72-193 (375)
435 PRK02006 murD UDP-N-acetylmura 59.5 30 0.00065 33.5 6.8 30 55-87 8-37 (498)
436 COG1648 CysG Siroheme synthase 59.4 1.1E+02 0.0024 25.9 11.4 100 55-157 13-131 (210)
437 cd02757 MopB_Arsenate-R This C 59.3 1.5E+02 0.0032 29.0 11.6 110 36-157 292-414 (523)
438 COG1703 ArgK Putative periplas 59.2 1.4E+02 0.0029 26.9 11.0 160 16-180 4-195 (323)
439 COG2873 MET17 O-acetylhomoseri 58.7 1.4E+02 0.0029 27.8 10.1 134 17-152 60-205 (426)
440 COG1648 CysG Siroheme synthase 58.7 87 0.0019 26.5 8.6 66 57-123 75-141 (210)
441 smart00481 POLIIIAc DNA polyme 58.6 12 0.00026 24.9 2.9 24 115-138 15-38 (67)
442 COG2185 Sbm Methylmalonyl-CoA 58.4 28 0.0006 27.4 5.1 78 55-133 13-96 (143)
443 PF00072 Response_reg: Respons 58.3 25 0.00054 25.4 4.9 74 65-140 7-83 (112)
444 cd05637 SIS_PGI_PMI_2 The memb 58.2 85 0.0018 24.3 9.0 121 44-190 4-131 (132)
445 TIGR01087 murD UDP-N-acetylmur 58.1 55 0.0012 30.9 8.3 29 56-87 1-29 (433)
446 cd01412 SIRT5_Af1_CobB SIRT5_A 57.9 29 0.00062 29.6 5.8 56 98-154 161-216 (224)
447 TIGR01142 purT phosphoribosylg 57.8 24 0.00052 32.6 5.7 38 117-154 11-48 (380)
448 PRK08535 translation initiatio 57.7 1.5E+02 0.0032 26.8 11.3 36 118-153 161-196 (310)
449 PRK00103 rRNA large subunit me 57.5 99 0.0021 24.8 11.9 82 98-188 63-151 (157)
450 cd00296 SIR2 SIR2 superfamily 57.2 27 0.00059 29.5 5.5 53 98-151 166-220 (222)
451 PF02558 ApbA: Ketopantoate re 57.0 10 0.00022 29.8 2.7 38 99-136 65-102 (151)
452 cd02753 MopB_Formate-Dh-H Form 57.0 1.9E+02 0.0041 27.9 12.7 29 38-66 263-291 (512)
453 PF01041 DegT_DnrJ_EryC1: DegT 56.3 31 0.00068 31.7 6.2 116 41-157 28-175 (363)
454 PLN00196 alpha-amylase; Provis 56.2 42 0.00092 31.8 7.0 77 55-133 24-110 (428)
455 cd01744 GATase1_CPSase Small c 56.2 59 0.0013 26.5 7.2 75 57-137 1-78 (178)
456 PRK08248 O-acetylhomoserine am 56.1 98 0.0021 29.4 9.5 50 103-152 151-207 (431)
457 COG0062 Uncharacterized conser 55.9 60 0.0013 27.3 7.1 102 56-157 52-188 (203)
458 COG0041 PurE Phosphoribosylcar 55.8 95 0.0021 24.7 7.6 56 57-132 6-61 (162)
459 PF01993 MTD: methylene-5,6,7, 55.5 26 0.00056 30.1 4.8 41 101-141 59-99 (276)
460 PRK09754 phenylpropionate diox 55.5 86 0.0019 29.2 9.0 39 48-90 139-177 (396)
461 PRK00994 F420-dependent methyl 55.3 21 0.00045 30.6 4.2 41 101-141 60-100 (277)
462 PRK11199 tyrA bifunctional cho 54.8 66 0.0014 29.9 8.0 47 37-87 65-129 (374)
463 PRK12313 glycogen branching en 54.4 43 0.00093 33.6 7.1 68 66-133 170-238 (633)
464 PRK06522 2-dehydropantoate 2-r 54.1 79 0.0017 28.0 8.3 40 100-139 65-104 (304)
465 CHL00199 infC translation init 53.8 22 0.00048 29.2 4.1 46 103-148 25-73 (182)
466 PF02310 B12-binding: B12 bind 53.7 23 0.00049 26.5 4.1 64 67-130 15-81 (121)
467 PRK03803 murD UDP-N-acetylmura 53.7 39 0.00084 32.1 6.5 30 55-87 7-36 (448)
468 COG0731 Fe-S oxidoreductases [ 53.6 23 0.00049 31.6 4.4 35 105-139 82-120 (296)
469 PRK05967 cystathionine beta-ly 53.5 2E+02 0.0042 27.0 10.9 77 75-154 123-209 (395)
470 cd06259 YdcF-like YdcF-like. Y 53.4 77 0.0017 24.7 7.2 79 41-138 21-105 (150)
471 PF01583 APS_kinase: Adenylyls 53.4 49 0.0011 26.5 6.0 75 56-137 4-83 (156)
472 PRK00028 infC translation init 53.0 22 0.00048 29.1 4.1 47 102-148 19-68 (177)
473 PLN03049 pyridoxine (pyridoxam 53.0 77 0.0017 30.4 8.2 99 57-156 63-199 (462)
474 COG1435 Tdk Thymidine kinase [ 52.9 23 0.0005 29.5 4.1 33 109-141 13-45 (201)
475 PRK08166 NADH dehydrogenase su 52.7 75 0.0016 33.1 8.8 93 41-136 297-408 (847)
476 cd02772 MopB_NDH-1_NuoG2 MopB_ 52.7 1E+02 0.0023 28.8 9.2 39 99-137 150-190 (414)
477 TIGR02964 xanthine_xdhC xanthi 52.6 1.3E+02 0.0029 26.0 9.1 33 55-90 101-133 (246)
478 cd00009 AAA The AAA+ (ATPases 52.1 97 0.0021 23.1 8.3 98 42-139 6-131 (151)
479 PRK05562 precorrin-2 dehydroge 52.0 72 0.0016 27.3 7.1 66 57-123 88-154 (223)
480 PLN02361 alpha-amylase 51.9 35 0.00075 32.1 5.6 77 55-133 11-94 (401)
481 cd01748 GATase1_IGP_Synthase T 51.8 98 0.0021 25.6 7.9 65 60-136 6-79 (198)
482 PRK09330 cell division protein 51.8 1.2E+02 0.0026 28.3 9.0 58 99-156 95-170 (384)
483 PRK05939 hypothetical protein; 51.8 1.4E+02 0.0029 28.0 9.6 57 76-133 106-166 (397)
484 PRK08114 cystathionine beta-ly 51.4 2.1E+02 0.0046 26.8 11.1 78 74-154 120-209 (395)
485 PRK05402 glycogen branching en 51.4 51 0.0011 33.7 7.2 70 64-133 263-333 (726)
486 PRK13413 mpi multiple promoter 51.2 40 0.00087 28.1 5.5 39 98-136 58-99 (200)
487 TIGR00168 infC translation ini 51.1 26 0.00056 28.4 4.1 45 104-148 9-56 (165)
488 PRK04663 murD UDP-N-acetylmura 51.1 84 0.0018 29.8 8.3 18 55-72 8-25 (438)
489 cd05567 PTS_IIB_mannitol PTS_I 50.9 85 0.0018 22.1 6.7 64 61-139 10-76 (87)
490 cd01410 SIRT7 SIRT7: Eukaryoti 50.9 45 0.00099 28.0 5.8 50 38-88 141-190 (206)
491 cd02750 MopB_Nitrate-R-NarG-li 50.9 2E+02 0.0043 27.5 10.8 111 36-157 269-391 (461)
492 PRK07810 O-succinylhomoserine 50.6 92 0.002 29.2 8.4 110 41-152 73-213 (403)
493 cd01411 SIR2H SIR2H: Uncharact 50.6 29 0.00064 29.6 4.6 53 98-152 168-220 (225)
494 PRK08327 acetolactate synthase 50.3 49 0.0011 32.7 6.7 73 39-111 206-289 (569)
495 PRK13170 hisH imidazole glycer 50.0 50 0.0011 27.4 5.9 65 60-136 8-78 (196)
496 PRK09259 putative oxalyl-CoA d 49.7 52 0.0011 32.5 6.8 72 39-110 199-281 (569)
497 PRK04296 thymidine kinase; Pro 49.6 1.5E+02 0.0032 24.4 9.8 52 105-156 81-143 (190)
498 cd02764 MopB_PHLH The MopB_PHL 49.4 54 0.0012 31.9 6.8 118 38-157 303-439 (524)
499 TIGR01470 cysG_Nterm siroheme 49.2 77 0.0017 26.6 6.9 67 56-123 71-138 (205)
500 COG0846 SIR2 NAD-dependent pro 49.2 12 0.00026 32.6 2.0 59 95-154 176-234 (250)
No 1
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=100.00 E-value=4.1e-47 Score=344.31 Aligned_cols=314 Identities=31% Similarity=0.554 Sum_probs=281.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccC
Q 019775 18 NTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIG 97 (336)
Q Consensus 18 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 97 (336)
++..+.+...++.++++++.++ +++.++++.+.+++++||++|.|.|+.+|++|+++|.++|+++.++++.+.+.....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~l~~~~~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 85 (321)
T PRK11543 7 NAGRQTLMLELQEASRLPERLG-DDFVRAANIILHCEGKVVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLG 85 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHhcCCcEEEEecChhHHHHHHHHHHHHcCCCceeecChHHHhhCCcC
Confidence 4455666777777788888877 679999999988734999999999999999999999999999999988777777778
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHH
Q 019775 98 ILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGD 177 (336)
Q Consensus 98 ~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d 177 (336)
.++++|++|+||+||++++++++++.||++|+++|+||++.+||++++||+++.++...+...+...++++.++.+++.|
T Consensus 86 ~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~ss~~~~~~~~d 165 (321)
T PRK11543 86 MIESRDVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDISVEREACPMHLAPTSSTVNTLMMGD 165 (321)
T ss_pred ccCCCCEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEcCCccccCCCCCCcHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999998754423445678999999999999
Q ss_pred HHHHHHHhhcCCChHHHhhcCCCCchhhhhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEE
Q 019775 178 TVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGT 257 (336)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~ 257 (336)
.|+..+..+.+...++|.+.|+.+.+++.+.++|+++|.++.++++++++.++.++.+.|.+++...+||+|++|+++|+
T Consensus 166 sL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~ 245 (321)
T PRK11543 166 ALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGV 245 (321)
T ss_pred HHHHHHHHHcCCCHHHhccCCCCCHHHHHHHhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEE
Confidence 99999999999999999999999999988889999999997445699999999999999998888999999999999999
Q ss_pred eeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhcCC
Q 019775 258 FTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL 336 (336)
Q Consensus 258 it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~~~ 336 (336)
|+..|+...+..... ...++.++|.+++.++.+++++.++++.|.++ +...+||+|++|+++|+||+.|++++|.
T Consensus 246 vt~~dl~~~~~~~~~--~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~~~lvGvIt~~di~~~~~ 320 (321)
T PRK11543 246 FTDGDLRRWLVGGGA--LTTPVNEAMTRGGTTLQAQSRAIDAKEILMKR--KITAAPVVDENGKLTGAINLQDFYQAGI 320 (321)
T ss_pred ecHHHHHHHHhCCCC--cCCcHHHhcCCCCEEECCCCCHHHHHHHHHHc--CCCEEEEEcCCCeEEEEEEHHHHHhccC
Confidence 999999886643221 24568899999999999999999999999999 9999999998899999999999999984
No 2
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=100.00 E-value=1.5e-46 Score=341.14 Aligned_cols=319 Identities=29% Similarity=0.561 Sum_probs=283.1
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccc
Q 019775 12 PHKVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDA 91 (336)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~ 91 (336)
+.+....+.+++...+.+.+++|...++. +++++++++.+++++||++|.|.|+.+|.+++++|.++|+++....+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~l~~~~~~l~~a~~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~ 84 (326)
T PRK10892 6 PGFDFQQAGKEVLAIEREGLAELDQYINQ-DFTLACEKMFWCKGKVVVMGMGKSGHIGRKMAATFASTGTPSFFVHPGEA 84 (326)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCeEEEEeCcHhHHHHHHHHHHHhcCCceeEEeChHHh
Confidence 34566788899999999999999999997 89999999988734999999999999999999999999999999776555
Q ss_pred cccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHH
Q 019775 92 LHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAI 171 (336)
Q Consensus 92 ~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~ 171 (336)
.......++++|++|++|+||++++++++++.||++|+++|+||++++||++++||+.|.++++.+..+....+++|.++
T Consensus 85 ~~~~~~~~~~~d~~I~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~~s~ia 164 (326)
T PRK10892 85 AHGDLGMVTPQDVVIAISNSGESSEILALIPVLKRLHVPLICITGRPESSMARAADIHLCVKVPKEACPLGLAPTSSTTA 164 (326)
T ss_pred hccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCcccccCCEEEEeCCCcccCCCCCCchHHHHH
Confidence 44456778999999999999999999999999999999999999999999999999999998765433445568999999
Q ss_pred HHHHHHHHHHHHHhhcCCChHHHhhcCCCCchhhhhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC
Q 019775 172 QMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE 251 (336)
Q Consensus 172 ~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~ 251 (336)
++++.|.|+..+..+++...+++...|....+.++..++|+++|.+...++++++++++.++.+.|.+.+...+||+|++
T Consensus 165 ~~~~~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~ 244 (326)
T PRK10892 165 TLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDN 244 (326)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHhcCCCchhcccccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCC
Confidence 99999999999999999999999988888888777888999999972236699999999999999998888888888988
Q ss_pred CcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhH
Q 019775 252 YHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGL 331 (336)
Q Consensus 252 ~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di 331 (336)
|+++|+||.+|++..... +......++.++|.+++.++.+++++.++++.|.++ +.+.+||+++ |+++|+||+.|+
T Consensus 245 g~lvGivt~~Dl~~~~~~-~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~--~~~~lpVv~~-~~lvGiit~~di 320 (326)
T PRK10892 245 MKIEGIFTDGDLRRVFDM-GIDLRQASIADVMTPGGIRVRPGILAVDALNLMQSR--HITSVLVADG-DHLLGVLHMHDL 320 (326)
T ss_pred CcEEEEEecHHHHHHHhc-CCCcccCCHHHhcCCCCEEECCCCCHHHHHHHHHHC--CCcEEEEeeC-CEEEEEEEhHHh
Confidence 999999999999875543 211224679999999999999999999999999999 9999999986 899999999999
Q ss_pred hhcC
Q 019775 332 VSAG 335 (336)
Q Consensus 332 ~~~~ 335 (336)
+++|
T Consensus 321 l~~~ 324 (326)
T PRK10892 321 LRAG 324 (326)
T ss_pred Hhcc
Confidence 9986
No 3
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=100.00 E-value=3.1e-41 Score=298.48 Aligned_cols=268 Identities=37% Similarity=0.677 Sum_probs=241.7
Q ss_pred CeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEE
Q 019775 55 GTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSV 134 (336)
Q Consensus 55 ~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~I 134 (336)
+|||++|.|.|..+|++|+++|.++|+++..+++..........++++|++|++|+||++++++++++.||++|+++|+|
T Consensus 1 ~rI~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~i 80 (268)
T TIGR00393 1 GKLVIVGIGKSGLIGKKIVATFASTGTPSFFLHPTEAMHGDLGMVEPNDVVLMISYSGESLELLNLIPHLKRLSHKIIAF 80 (268)
T ss_pred CcEEEEecChHHHHHHHHHHHHHhcCCceEEeCHhHHhhcccCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEE
Confidence 38999999999999999999999999999998887776666678899999999999999999999999999999999999
Q ss_pred eCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHHHhhcCCCCchhhhhhhhhhhc
Q 019775 135 TSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDV 214 (336)
Q Consensus 135 T~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 214 (336)
|++..++++++||++|.++.+.+..+....+++|..++++++|+|+..++.+++....++...|+.+.+.....++|+++
T Consensus 81 T~~~~s~l~~~~d~~l~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 160 (268)
T TIGR00393 81 TGSPNSSLARAADYVLDIKVEKEACPINLAPTTSTTLTLALGDALAVALMRARNFSQEDFASFHPGGALGRKLLVKVKDL 160 (268)
T ss_pred ECCCCCcccccCCEEEEcCCCcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHCcCHHHHhhcCCCchhhHhhhhhHHHH
Confidence 99999999999999999987654334556789999999999999999999999999999999999998887667899999
Q ss_pred cccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCc
Q 019775 215 MKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDA 294 (336)
Q Consensus 215 m~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~ 294 (336)
|.+.. ++++++++++.++.+.|.+.+.+.+||+|++|+++|+++..|+........ ....++.++|.+++..+.+++
T Consensus 161 m~~~~-~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~--~~~~~v~~im~~~~~~v~~~~ 237 (268)
T TIGR00393 161 MQTTD-LPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGG--SLKSEVRDFMTLGPKTFKLDA 237 (268)
T ss_pred hCCCC-CCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCC--cccCcHHHhCCCCCeEECCCC
Confidence 98862 458999999999999999888999999998899999999999988654211 124679999999899999999
Q ss_pred cHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEe
Q 019775 295 MAVEAMQKMESPPSPVQFLPVINRQNILIGIVT 327 (336)
Q Consensus 295 ~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit 327 (336)
++.++++.|.++ +...+||+|++|+++|+|+
T Consensus 238 ~l~~a~~~m~~~--~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 238 LLLEALEFLERR--KITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred cHHHHHHHHHHc--CCcEEEEECCCCeEEEEEC
Confidence 999999999999 8999999998899999985
No 4
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=4.5e-30 Score=209.27 Aligned_cols=199 Identities=35% Similarity=0.658 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccC
Q 019775 18 NTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIG 97 (336)
Q Consensus 18 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 97 (336)
+..++++..+.+.+.+..++++.++|.++++.|.++++||+++|.|.|..+|+-|+.+|...|.+++++.+.+-.+..+.
T Consensus 3 ~~a~~i~~~~~~~l~~~~~~~~~~~~~~a~~~i~~~~gkv~V~G~GkSG~Igkk~Aa~L~s~G~~a~fv~p~ea~hgdlg 82 (202)
T COG0794 3 DIAKEILMTEAEALLELAERLDDEDFVRAVELILECKGKVFVTGVGKSGLIGKKFAARLASTGTPAFFVGPAEALHGDLG 82 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcEEEEcCChhHHHHHHHHHHHHccCCceEEecCchhccCCcc
Confidence 56788999999999999999998999999999987667999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHH
Q 019775 98 ILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGD 177 (336)
Q Consensus 98 ~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d 177 (336)
.++++|++|+||.||+|.+++.+++.+|+.|+++|+||++++|+|++.||+++.+|...+.++....+++|.+.+++.-|
T Consensus 83 ~i~~~DvviaiS~SGeT~el~~~~~~aK~~g~~liaiT~~~~SsLak~aDvvl~ip~~~e~~p~~l~pt~st~~~l~~gd 162 (202)
T COG0794 83 MITPGDVVIAISGSGETKELLNLAPKAKRLGAKLIAITSNPDSSLAKAADVVLVIPVKTEACPLGLAPTTSTTLTLALGD 162 (202)
T ss_pred CCCCCCEEEEEeCCCcHHHHHHHHHHHHHcCCcEEEEeCCCCChHHHhcCeEEEccCccccCcccCCcchhhHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCChHHHhhcCCCCchhhhhhhhhhhccc
Q 019775 178 TVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMK 216 (336)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~ 216 (336)
.+...+++.++...+++...||.+.++..+...++++|.
T Consensus 163 al~~~L~e~~~f~~~D~~~~hp~g~lG~~l~~~v~~~~~ 201 (202)
T COG0794 163 ALAGTLFEARGFSFEDFAIAHPGGALGAKLLLKVKDHMN 201 (202)
T ss_pred HHHHHHHHHhCCCHHHHHHhCchhhhCccHHHHHHHhcc
Confidence 999999999999999999999999999999988998886
No 5
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=99.96 E-value=4.4e-28 Score=214.42 Aligned_cols=180 Identities=24% Similarity=0.351 Sum_probs=163.9
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCcc
Q 019775 11 LPHKVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLD 90 (336)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~ 90 (336)
.+++....+.+++++...+.|+.+.+.++++.+++++++|.+| +|||++|.|.|..+|.+++++|.++|+++..+.+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~l~~av~~L~~A-~rI~~~G~g~S~~vA~~~~~~l~~ig~~~~~~~d~~ 166 (281)
T COG1737 88 AEDDGPESILEKLLAANIAALERTLNLLDEEALERAVELLAKA-RRIYFFGLGSSGLVASDLAYKLMRIGLNVVALSDTH 166 (281)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC-CeEEEEEechhHHHHHHHHHHHHHcCCceeEecchH
Confidence 4456677799999999999999999999999999999999999 699999999999999999999999999999999877
Q ss_pred ccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHH
Q 019775 91 ALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTA 170 (336)
Q Consensus 91 ~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~ 170 (336)
.+......++++|++|+||+||++++++++++.||++|++||+||++..||+++.||+++.++...+. ....+++|++
T Consensus 167 ~~~~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~~~~~~~--~~~~~~~s~~ 244 (281)
T COG1737 167 GQLMQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLVPVAEES--FFRSPISSRI 244 (281)
T ss_pred HHHHHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhceEEeccCcccc--chhhhHHHHH
Confidence 77667888999999999999999999999999999999999999999999999999999999887662 2223678999
Q ss_pred HHHHHHHHHHHHHHhhcCCChHH
Q 019775 171 IQMVFGDTVAIAMMGARNLTRDE 193 (336)
Q Consensus 171 ~~~~l~d~l~~~~~~~~~~~~~~ 193 (336)
++++++|+|+..+.+..+....+
T Consensus 245 a~l~l~d~L~~~~~~~~~~~~~~ 267 (281)
T COG1737 245 AQLALIDALITAVAQRRGEAALK 267 (281)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999987644433
No 6
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=99.96 E-value=2.1e-27 Score=197.04 Aligned_cols=172 Identities=22% Similarity=0.344 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCC
Q 019775 22 DLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSS 101 (336)
Q Consensus 22 ~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 101 (336)
+++++...+++++.+.++.+.++++++.|.++ +|||++|.|.|..+|.+++++|.++|+++..+.+.. ...+++
T Consensus 2 ~~~~~~~~~l~~t~~~l~~~~l~~~~~~i~~a-~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~-----~~~~~~ 75 (179)
T cd05005 2 EYLSLILEEIENVADKIDEEELDKLISAILNA-KRIFVYGAGRSGLVAKAFAMRLMHLGLNVYVVGETT-----TPAIGP 75 (179)
T ss_pred cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC-CeEEEEecChhHHHHHHHHHHHHhCCCeEEEeCCCC-----CCCCCC
Confidence 46788899999999999999999999999999 699999999999999999999999999999986532 356889
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCC----CCCChhH--HHHHHHH
Q 019775 102 DDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPF----DLAPVTS--TAIQMVF 175 (336)
Q Consensus 102 ~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~----~~~~~~s--~~~~~~l 175 (336)
+|++|+||+||++++++++++.||++|+++|+||++.++|++++||++|.+++....... ...++.+ ..+++++
T Consensus 76 ~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 155 (179)
T cd05005 76 GDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVIPAATKDDHGGEHKSIQPLGTLFEQSALVF 155 (179)
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeCCcccccCCCCccccccCccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999987653221 1233444 4689999
Q ss_pred HHHHHHHHHhhcCCChHHHhhcCC
Q 019775 176 GDTVAIAMMGARNLTRDEYAANHP 199 (336)
Q Consensus 176 ~d~l~~~~~~~~~~~~~~~~~~~~ 199 (336)
+|+|+..+++..+..++++.++|.
T Consensus 156 ld~l~~~~~~~~~~~~~~~~~~~~ 179 (179)
T cd05005 156 LDAVIAKLMEELGVSEEEMKKRHA 179 (179)
T ss_pred HHHHHHHHHHHhCCCHHHHHHhcC
Confidence 999999999999999999999883
No 7
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=99.96 E-value=2.3e-27 Score=196.96 Aligned_cols=169 Identities=23% Similarity=0.368 Sum_probs=151.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEE
Q 019775 26 SQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDIL 105 (336)
Q Consensus 26 ~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlv 105 (336)
+..++++++.+.++.++++++++.|.++ ++||++|.|.|+.+|.+++++|.++|+++....+.. ...++++|++
T Consensus 3 ~~~~~l~~t~~~l~~~~~~~~~~~l~~a-~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~-----~~~~~~~Dv~ 76 (179)
T TIGR03127 3 LILDEISQVASRIDEEELDKLADKIIKA-KRIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVGETT-----TPSIKKGDLL 76 (179)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHHhCCCeEEEeCCcc-----cCCCCCCCEE
Confidence 4578899999999999999999999999 599999999999999999999999999999887642 3578899999
Q ss_pred EEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCC----CCChhHHH--HHHHHHHHH
Q 019775 106 VMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFD----LAPVTSTA--IQMVFGDTV 179 (336)
Q Consensus 106 i~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~----~~~~~s~~--~~~~l~d~l 179 (336)
|+||+||++++++++++.||++|+++|+||+++++|++++||++|.++......... ..++.+.+ ++++++|+|
T Consensus 77 I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~ild~l 156 (179)
T TIGR03127 77 IAISGSGETESLVTVAKKAKEIGATVAAITTNPESTLGKLADVVVEIPAATKKDSEGNYKSIQPLGSLFEQSLLLFLDAV 156 (179)
T ss_pred EEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeCCccccCCCCCccccCcCchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999876532211 34566765 779999999
Q ss_pred HHHHHhhcCCChHHHhhcCCC
Q 019775 180 AIAMMGARNLTRDEYAANHPA 200 (336)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~ 200 (336)
+..++++++...+++.+.|++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR03127 157 ILKLMKKKGLDEEEMKKRHAN 177 (179)
T ss_pred HHHHHHHhCcCHHHHHHHhcc
Confidence 999999999999999998886
No 8
>PRK15482 transcriptional regulator MurR; Provisional
Probab=99.95 E-value=4.6e-27 Score=209.30 Aligned_cols=174 Identities=16% Similarity=0.224 Sum_probs=157.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccc
Q 019775 14 KVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALH 93 (336)
Q Consensus 14 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~ 93 (336)
++...+.+++......+++++.+.++.+.+++++++|.+| ++||++|.|.|..+|.+|+++|.++|+++....+.+...
T Consensus 96 ~~~~~i~~~~~~~~~~~i~~t~~~id~~~l~~~~~~i~~A-~~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~ 174 (285)
T PRK15482 96 DSLEVIARKLNREKELALEQTCALFDYARLQKIIEVISKA-PFIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQA 174 (285)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC-CeeEEEEeChhHHHHHHHHHHHHhCCCeeEEeccHhHHH
Confidence 4455677777888889999999999999999999999999 699999999999999999999999999999987766665
Q ss_pred cccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHH
Q 019775 94 GDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQM 173 (336)
Q Consensus 94 ~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~ 173 (336)
.....++++|++|+||+||++++++++++.|+++|+++|+||++..+|++++||++|.++++.. .+....++|+++++
T Consensus 175 ~~~~~~~~~Dv~i~iS~sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~~~~~~~--~~~~~~~ss~~~~~ 252 (285)
T PRK15482 175 TVSQALKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTVSGET--EWRSSSMSTRTAQN 252 (285)
T ss_pred HHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEEcCCCcc--chhHHHHHHHHHHH
Confidence 5566789999999999999999999999999999999999999999999999999999988654 44556799999999
Q ss_pred HHHHHHHHHHHhhcCCC
Q 019775 174 VFGDTVAIAMMGARNLT 190 (336)
Q Consensus 174 ~l~d~l~~~~~~~~~~~ 190 (336)
+++|+|+..+..++...
T Consensus 253 ~~id~L~~~~~~~~~~~ 269 (285)
T PRK15482 253 SVTDLLFVGLVQLNDVE 269 (285)
T ss_pred HHHHHHHHHHHHhchHH
Confidence 99999999999987543
No 9
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=99.95 E-value=1.4e-26 Score=205.75 Aligned_cols=175 Identities=23% Similarity=0.233 Sum_probs=157.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccc
Q 019775 14 KVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALH 93 (336)
Q Consensus 14 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~ 93 (336)
+....+.+++++...++++++++.++.+.+++++++|.++ ++||++|.|.|..+|++|+++|.++|+++....+...+.
T Consensus 89 ~~~~~~~~~~~~~~~~~l~~t~~~~~~~~l~~~~~~i~~a-~~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~ 167 (278)
T PRK11557 89 DPLRLVGEKLIKENTAAMRATLDVNSEEKLHECVTMLRSA-RRIILTGIGASGLVAQNFAWKLMKIGINAVAERDMHALL 167 (278)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC-CeEEEEecChhHHHHHHHHHHHhhCCCeEEEcCChHHHH
Confidence 3344567788999999999999999999999999999999 699999999999999999999999999999887777766
Q ss_pred cccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHH
Q 019775 94 GDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQM 173 (336)
Q Consensus 94 ~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~ 173 (336)
.....++++|++|+||++|++++++++++.||++|++||+||++..+|++++||++|.++.... .....+++|.++++
T Consensus 168 ~~~~~~~~~Dv~I~iS~sg~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~~~~~~~--~~~~~~~~s~~~~~ 245 (278)
T PRK11557 168 ATVQALSPDDLLLAISYSGERRELNLAADEALRVGAKVLAITGFTPNALQQRASHCLYTIAEEQ--ATRSAAISSTHAQG 245 (278)
T ss_pred HHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEEEeCCCCc--ccchHHHHHHHHHH
Confidence 6677899999999999999999999999999999999999999999999999999998876543 33456899999999
Q ss_pred HHHHHHHHHHHhhcCCCh
Q 019775 174 VFGDTVAIAMMGARNLTR 191 (336)
Q Consensus 174 ~l~d~l~~~~~~~~~~~~ 191 (336)
+++|+|+..+..+++...
T Consensus 246 ~l~d~L~~~~~~~~~~~~ 263 (278)
T PRK11557 246 MLTDLLFMALIQQDLERA 263 (278)
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 999999999998876443
No 10
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=99.95 E-value=3.6e-26 Score=204.43 Aligned_cols=174 Identities=14% Similarity=0.230 Sum_probs=158.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccc
Q 019775 14 KVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALH 93 (336)
Q Consensus 14 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~ 93 (336)
+...++++++++.+.++++++.+.++.+.+++++++|.++ ++||++|.|.|..+|.+|+++|.++|+++..+++...+.
T Consensus 101 ~~~~~~~~~~~~~~~~~i~~t~~~l~~~~l~~~~~~i~~A-~~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~ 179 (292)
T PRK11337 101 DAPQDVVNKVFNTSLQAIEETQSILDVDEFHRAARFFYQA-RQRDLYGAGGSAAIARDVQHKFLRIGVRCQAYDDAHIML 179 (292)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC-CeEEEEEecHHHHHHHHHHHHHhhCCCeEEEcCCHHHHH
Confidence 4556888999999999999999999999999999999999 699999999999999999999999999999988877666
Q ss_pred cccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHH
Q 019775 94 GDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQM 173 (336)
Q Consensus 94 ~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~ 173 (336)
.....++++|++|+||+||++++++++++.||++|+++|+||++.++|++++||++|.+++... .+....++|.++++
T Consensus 180 ~~~~~~~~~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~~~~~--~~~~~~~~s~~~~~ 257 (292)
T PRK11337 180 MSAALLQEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVICSTAQGS--PLLGENAAARIAQL 257 (292)
T ss_pred HHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEcCCCCc--ccccchHHHHHHHH
Confidence 5566789999999999999999999999999999999999999999999999999999987654 34445678999999
Q ss_pred HHHHHHHHHHHhhcCCC
Q 019775 174 VFGDTVAIAMMGARNLT 190 (336)
Q Consensus 174 ~l~d~l~~~~~~~~~~~ 190 (336)
+++|+|+..++.++...
T Consensus 258 ~i~d~L~~~l~~~~~~~ 274 (292)
T PRK11337 258 NILDAFFVSVAQLNIEQ 274 (292)
T ss_pred HHHHHHHHHHHHHhhHH
Confidence 99999999999887543
No 11
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=99.93 E-value=8e-25 Score=195.18 Aligned_cols=173 Identities=21% Similarity=0.266 Sum_probs=153.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccc
Q 019775 14 KVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALH 93 (336)
Q Consensus 14 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~ 93 (336)
+...+...++++...++++++.+.++.++++++++.|.++ ++||++|.|.|..+|.+++++|.+.|+++....+.....
T Consensus 89 ~~~~~~~~~~~~~~~~~l~~t~~~id~~~i~~~~~~i~~a-~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~ 167 (284)
T PRK11302 89 DSVEAYTGKIFESAMASLDHARQSLDPSAINRAVDLLTQA-KKISFFGLGASAAVAHDAQNKFFRFNVPVVYFDDIVMQR 167 (284)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC-CeEEEEEcchHHHHHHHHHHHHHhcCCceEecCCHHHHH
Confidence 4456778899999999999999999999999999999999 699999999999999999999999999999887654443
Q ss_pred cccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHH
Q 019775 94 GDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQM 173 (336)
Q Consensus 94 ~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~ 173 (336)
.....++++|++|+||+||++++++++++.||++|++||+||+ .++|++++||++|.++...+ .....+++|.++++
T Consensus 168 ~~~~~~~~~D~vI~iS~sG~t~~~~~~~~~ak~~g~~vI~IT~-~~s~l~~~ad~~l~~~~~~~--~~~~~~~~s~~~~~ 244 (284)
T PRK11302 168 MSCMNSSDGDVVVLISHTGRTKSLVELAQLARENGATVIAITS-AGSPLAREATLALTLDVPED--TDIYMPMVSRIAQL 244 (284)
T ss_pred HHHHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEECC-CCChhHHhCCEEEecCCCcc--chhcchHHHHHHHH
Confidence 3445678999999999999999999999999999999999998 79999999999999986543 22235788999999
Q ss_pred HHHHHHHHHHHhhcCCC
Q 019775 174 VFGDTVAIAMMGARNLT 190 (336)
Q Consensus 174 ~l~d~l~~~~~~~~~~~ 190 (336)
+++|+|+..+...++..
T Consensus 245 ~l~d~L~~~l~~~~~~~ 261 (284)
T PRK11302 245 TVIDVLATGFTLRRGAK 261 (284)
T ss_pred HHHHHHHHHHHHHhhHH
Confidence 99999999999887643
No 12
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=99.91 E-value=2e-23 Score=163.80 Aligned_cols=127 Identities=44% Similarity=0.784 Sum_probs=116.1
Q ss_pred CeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEE
Q 019775 55 GTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSV 134 (336)
Q Consensus 55 ~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~I 134 (336)
+|||++|.|.|+.+|++++++|.++|+++..+.+.+.+......++++|++|++|+||++++++++++.||++|+++|+|
T Consensus 1 ~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~i 80 (128)
T cd05014 1 GKVVVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAI 80 (128)
T ss_pred CeEEEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEE
Confidence 38999999999999999999999999999999887777767778899999999999999999999999999999999999
Q ss_pred eCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHH
Q 019775 135 TSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAI 181 (336)
Q Consensus 135 T~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~ 181 (336)
|++.++|++++||++|.++.+.+.......+++|++++++++|+|+.
T Consensus 81 T~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~~s~~~~~~~~d~l~~ 127 (128)
T cd05014 81 TGNPNSTLAKLSDVVLDLPVEEEACPLGLAPTTSTTAMLALGDALAV 127 (128)
T ss_pred eCCCCCchhhhCCEEEECCCCcccccCCCCchHHHHHHHHHHHHHhh
Confidence 99999999999999999988765333455689999999999999975
No 13
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=99.90 E-value=6.2e-23 Score=201.53 Aligned_cols=176 Identities=22% Similarity=0.273 Sum_probs=155.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccc
Q 019775 14 KVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALH 93 (336)
Q Consensus 14 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~ 93 (336)
+...+...++++...++++++.+.++.+.++++++.|.++ ++||++|.|.|+.+|.+++++|.++|+++....+.....
T Consensus 429 ~~~~~~~~~~~~~~~~~i~~t~~~id~~~l~~aa~~L~~a-~rI~i~G~G~S~~~A~~~~~~l~~lg~~~~~~~d~~~~~ 507 (638)
T PRK14101 429 DTATDFGAKVLDNTVSAILQLREHLNFEHVEQAIDILNNA-RRIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQA 507 (638)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC-CEEEEEEccHHHHHHHHHHHHHhcCCceEEEcCCHHHHH
Confidence 3445678889999999999999999999999999999999 699999999999999999999999999999887766655
Q ss_pred cccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHH
Q 019775 94 GDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQM 173 (336)
Q Consensus 94 ~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~ 173 (336)
.....++++|++|+||+||++++++++++.||++|++||+||+. .||++++||++|.++.... .....++.|+++++
T Consensus 508 ~~~~~l~~~DvvI~iS~sG~t~e~i~~~~~Ak~~Ga~vIaIT~~-~spLa~~aD~~L~~~~~~~--~~s~~~~~s~~~~l 584 (638)
T PRK14101 508 ASAALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSS-NTPLAKRATVALETDHIEM--RESQLSMISRILHL 584 (638)
T ss_pred HHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEcCC-CChhHhhCCEEEEcCCccc--hhccccHHHHHHHH
Confidence 45567899999999999999999999999999999999999995 8999999999998766433 34557799999999
Q ss_pred HHHHHHHHHHHhhc---CCChHH
Q 019775 174 VFGDTVAIAMMGAR---NLTRDE 193 (336)
Q Consensus 174 ~l~d~l~~~~~~~~---~~~~~~ 193 (336)
+++|+|+..+..++ +....+
T Consensus 585 ~lid~L~~~l~~~~~~~~~~~~~ 607 (638)
T PRK14101 585 VMIDILAVGVAIRRAAPNAELAE 607 (638)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHH
Confidence 99999999999998 544444
No 14
>PRK02947 hypothetical protein; Provisional
Probab=99.88 E-value=9.6e-22 Score=170.28 Aligned_cols=187 Identities=18% Similarity=0.154 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH----HcCCCeEEEEeccchHHHHHHHHHHHH------hcCCeeee--
Q 019775 18 NTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTL----LKCRGTIFFTGVGKSGFVANKISQTLI------SLGIKSGF-- 85 (336)
Q Consensus 18 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i----~~a~~~I~i~G~G~s~~~a~~~~~~l~------~~g~~~~~-- 85 (336)
+.+.++++...+.++++.+. ..+.|+++++++ .++ ++||++|.|.|..+|.+|+++|. .++.+...
T Consensus 2 ~~~~~~~~~~~~~l~~i~~~-~~e~i~~aa~lla~~i~~a-~~I~i~G~G~S~~vA~~~~~rlg~~~~~~~i~~~~~~~~ 79 (246)
T PRK02947 2 DMIDEYFDAVIELLERVRET-QAEAIEKAADLIADSIRNG-GLIYVFGTGHSHILAEEVFYRAGGLAPVNPILEPSLMLH 79 (246)
T ss_pred hHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHCC-CEEEEEcCcHHHHHHHHhccccccCcccCCCCCHHHhcc
Confidence 34667888888999888887 778888888887 456 69999999999999999999983 33444331
Q ss_pred -----------cCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCC-----------Cccc
Q 019775 86 -----------LNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEG-----------NALA 143 (336)
Q Consensus 86 -----------~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~-----------s~l~ 143 (336)
..+...+......++++|++|+||+||++++++++++.||++|+++|+||++.. ++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~i~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~~s~~~~~~h~~gs~l~ 159 (246)
T PRK02947 80 EGAVASSYLERVEGYAKAILDRYDIRPGDVLIVVSNSGRNPVPIEMALEAKERGAKVIAVTSLAYSASVASRHSSGKRLA 159 (246)
T ss_pred ccHHHHHHhhhcccHHHHHHHHcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCcccccccccCCCcCchh
Confidence 112233333456789999999999999999999999999999999999999984 7999
Q ss_pred cccCEEEEcCCCccc------CCCCCCChhHHHHHHHHHHHHHHHHHhh---cCCChHHHh-hcCCCCchhhh
Q 019775 144 AVCDMNVHLPVEREL------CPFDLAPVTSTAIQMVFGDTVAIAMMGA---RNLTRDEYA-ANHPAGRIGKS 206 (336)
Q Consensus 144 ~~ad~~i~~~~~~~~------~~~~~~~~~s~~~~~~l~d~l~~~~~~~---~~~~~~~~~-~~~~~~~~~~~ 206 (336)
++||++|.++..... .........|.+++++++|.|+..+.+. ++.++..|. .+++.++-...
T Consensus 160 ~~ad~~l~~~~~~~~~~v~~e~~~~~~~~~s~~~~~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 232 (246)
T PRK02947 160 EVADVVLDNGAPKGDAVLEIPGLEAPVGPVSTVVGAAILNAIFAEVAERLVERGITPPVFLSANVDGGDEHNQ 232 (246)
T ss_pred HhCCEEEEcCCCCCCeEEEeCCCCCCcCcHhHHHHHHHHHHHHHHHHHHHHHCCCCCCeeecCCCCCcHHHHH
Confidence 999999988774320 0133356789999999999998777655 578888886 66777754443
No 15
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=99.88 E-value=1.2e-21 Score=155.71 Aligned_cols=137 Identities=25% Similarity=0.340 Sum_probs=125.5
Q ss_pred HHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHH
Q 019775 42 HTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVV 121 (336)
Q Consensus 42 ~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~ 121 (336)
+++++++.|.++ ++|+++|+|.|..+|.++++.|...|+.+..+++...........+++|++|++|.+|+++++++++
T Consensus 2 ~i~~~~~~i~~~-~~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~~~ 80 (139)
T cd05013 2 ALEKAVDLLAKA-RRIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEAA 80 (139)
T ss_pred HHHHHHHHHHhC-CEEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHHHH
Confidence 588999999999 6999999999999999999999999999999988777766666788999999999999999999999
Q ss_pred HHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHH
Q 019775 122 PCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAI 181 (336)
Q Consensus 122 ~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~ 181 (336)
+.++++|+++|+||++.++++++++|++|.++...+. ....++.+.++.++++|+|+.
T Consensus 81 ~~a~~~g~~iv~iT~~~~~~l~~~~d~~i~~~~~~~~--~~~~~~~~~~~~~~~~d~l~~ 138 (139)
T cd05013 81 EIAKERGAKVIAITDSANSPLAKLADIVLLVSSEEGD--FRSSAFSSRIAQLALIDALFL 138 (139)
T ss_pred HHHHHcCCeEEEEcCCCCChhHHhcCEEEEcCCCccc--cccchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999987652 334678999999999999864
No 16
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=99.86 E-value=3.5e-21 Score=151.56 Aligned_cols=129 Identities=28% Similarity=0.364 Sum_probs=116.0
Q ss_pred HHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccc-cccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHc
Q 019775 49 TLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDA-LHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAK 127 (336)
Q Consensus 49 ~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~ 127 (336)
.|.++ +||+++|.|.|+.+|.+++++|.++|..+....+... .......++++|++|+||++|++.++++.++.+|++
T Consensus 1 ~i~~~-~~i~i~G~G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg~~~~~~~~~~~ak~~ 79 (131)
T PF01380_consen 1 KIAKA-KRIYIYGSGSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLENLDPDDLVIIISYSGETRELIELLRFAKER 79 (131)
T ss_dssp -HTTS-SEEEEEESTHHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSSTTHHHHHHHHHHHHT
T ss_pred CCCCC-CEEEEEEcchHHHHHHHHHHHHHHhcCcceeccchHHHhhhhcccccccceeEeeeccccchhhhhhhHHHHhc
Confidence 36788 6999999999999999999999999888877765444 565588899999999999999999999999999999
Q ss_pred CCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHH
Q 019775 128 GAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAI 181 (336)
Q Consensus 128 g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~ 181 (336)
|+++|+||++.++++++++|++|.++.+.+. ....+.+..+++++++.++.
T Consensus 80 g~~vi~iT~~~~~~l~~~ad~~l~~~~~~~~---~~~~~~s~~~~~~~~~~l~~ 130 (131)
T PF01380_consen 80 GAPVILITSNSESPLARLADIVLYIPTGEES---QSASTSSFSAQLSLLDALFN 130 (131)
T ss_dssp TSEEEEEESSTTSHHHHHSSEEEEEESSCGS---SSSHSHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCchhhhCCEEEEecCCCcc---ccchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998772 55689999999999999875
No 17
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=99.86 E-value=7e-21 Score=148.85 Aligned_cols=120 Identities=26% Similarity=0.287 Sum_probs=99.4
Q ss_pred eEEEEeccchHHHHHHHHHHHHhcC-CeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEE
Q 019775 56 TIFFTGVGKSGFVANKISQTLISLG-IKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSV 134 (336)
Q Consensus 56 ~I~i~G~G~s~~~a~~~~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~I 134 (336)
|||++|.|.|+.+|.+++++|.++| +++...+ ...+......++++|++|++|+||++++++++++.||++|+++|+|
T Consensus 1 ~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~i 79 (126)
T cd05008 1 RILIVGCGTSYHAALVAKYLLERLAGIPVEVEA-ASEFRYRRPLLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAI 79 (126)
T ss_pred CEEEEEccHHHHHHHHHHHHHHHhcCCceEEEe-hhHhhhcCCCCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEE
Confidence 5999999999999999999999996 8888776 4444444556899999999999999999999999999999999999
Q ss_pred eCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHH
Q 019775 135 TSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFG 176 (336)
Q Consensus 135 T~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~ 176 (336)
|+++++|++++||++|.++.+.+........+++.+++++++
T Consensus 80 T~~~~s~la~~ad~~l~~~~~~e~~~~~~~~~~~~~~~l~l~ 121 (126)
T cd05008 80 TNVVGSTLAREADYVLYLRAGPEISVAATKAFTSQLLALLLL 121 (126)
T ss_pred ECCCCChHHHhCCEEEEecCCCcceechhhhHHHHHHHHHHH
Confidence 999999999999999999886453332224455555555443
No 18
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=99.85 E-value=9e-20 Score=150.95 Aligned_cols=139 Identities=22% Similarity=0.348 Sum_probs=111.3
Q ss_pred HhcCChhHHHHHHHHHHc----CCCeEEEEeccchHHHHHHHHHHHH------hcCCeeeecCC-cccccc---------
Q 019775 35 FQHLSLPHTLTFTQTLLK----CRGTIFFTGVGKSGFVANKISQTLI------SLGIKSGFLNP-LDALHG--------- 94 (336)
Q Consensus 35 ~~~~~~~~i~~~~~~i~~----a~~~I~i~G~G~s~~~a~~~~~~l~------~~g~~~~~~~~-~~~~~~--------- 94 (336)
....+.+.++++++.+.+ + ++||++|.|.|..+|.+|+++|. +.|+++..+++ ...+..
T Consensus 11 ~~~~~~~~i~~a~~~i~~~i~~~-~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 89 (177)
T cd05006 11 LLELLAEAIEQAAQLLAEALLNG-GKILICGNGGSAADAQHFAAELVKRFEKERPGLPAIALTTDTSILTAIANDYGYEE 89 (177)
T ss_pred HHHhhHHHHHHHHHHHHHHHHCC-CEEEEEeCcHHHHHHHHHHHHHhchhccCCCCCceEeccCCHHHHHHHhccCCHHH
Confidence 344577888999988866 6 69999999999999999999986 35888888772 221111
Q ss_pred -----ccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHH
Q 019775 95 -----DIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTST 169 (336)
Q Consensus 95 -----~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~ 169 (336)
....++++|++|+||+||++++++++++.||++|+++|+||++.++|++++||++|.++.... -...
T Consensus 90 ~~~~~~~~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~~~~~~--------~~~~ 161 (177)
T cd05006 90 VFSRQVEALGQPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVPSDDT--------PRIQ 161 (177)
T ss_pred HHHHHHHHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeCCCCh--------HHHH
Confidence 113578999999999999999999999999999999999999999999999999999987644 1144
Q ss_pred HHHHHHHHHHHHH
Q 019775 170 AIQMVFGDTVAIA 182 (336)
Q Consensus 170 ~~~~~l~d~l~~~ 182 (336)
-.+.++++.|...
T Consensus 162 ~~~~~~~~~~~~~ 174 (177)
T cd05006 162 EVHLLIGHILCEL 174 (177)
T ss_pred HHHHHHHHHHHHH
Confidence 5556666666544
No 19
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=99.83 E-value=2.1e-19 Score=149.80 Aligned_cols=136 Identities=18% Similarity=0.252 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHh-cCChhHHHHHHHHHHcC----CCeEEEEeccchHHHHHHHH------HHHHhcCCeeeecCCc
Q 019775 21 LDLFKSQQDHLNYFFQ-HLSLPHTLTFTQTLLKC----RGTIFFTGVGKSGFVANKIS------QTLISLGIKSGFLNPL 89 (336)
Q Consensus 21 ~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~i~~a----~~~I~i~G~G~s~~~a~~~~------~~l~~~g~~~~~~~~~ 89 (336)
++.+....+.++...+ ....+.++++++.|.++ + ||++||.|.|..+|.+++ +++.+.|+++....+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~i~~al~~~~-rI~i~G~G~S~~~A~~~a~~l~~~~~~~r~g~~~~~~~d~ 85 (192)
T PRK00414 7 RNELNEAAETLANFLKDDANIHAIQRAAVLIADSFKAGG-KVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDV 85 (192)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHHhcccccCCCCCceEEecCcH
Confidence 3444444444433322 12347899999998866 5 999999999999999998 5556789999887654
Q ss_pred cccc--------------cccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCC
Q 019775 90 DALH--------------GDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVE 155 (336)
Q Consensus 90 ~~~~--------------~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~ 155 (336)
.... ......+++|++|+||+||++++++++++.||++|+++|+||++.++|++++||++|.++..
T Consensus 86 ~~~~~~~~d~~~~~~~~~~~~~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~~ad~~l~~~~~ 165 (192)
T PRK00414 86 SHLSCVSNDFGYDYVFSRYVEAVGREGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGKMAGLADIEIRVPHF 165 (192)
T ss_pred HHHhhhhccCCHHHHHHHHHHHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCCC
Confidence 2211 12334689999999999999999999999999999999999999999999999999999885
Q ss_pred cc
Q 019775 156 RE 157 (336)
Q Consensus 156 ~~ 157 (336)
..
T Consensus 166 ~~ 167 (192)
T PRK00414 166 GY 167 (192)
T ss_pred CC
Confidence 33
No 20
>PRK13936 phosphoheptose isomerase; Provisional
Probab=99.83 E-value=6.9e-19 Score=147.54 Aligned_cols=157 Identities=19% Similarity=0.253 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHhcCCh---hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHH------hcCCeeeecC----
Q 019775 21 LDLFKSQQDHLNYFFQHLSL---PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLI------SLGIKSGFLN---- 87 (336)
Q Consensus 21 ~~~~~~~~~~l~~~~~~~~~---~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~------~~g~~~~~~~---- 87 (336)
..++....+.+....+.+.+ +.++.+++.+.++ ++|++||.|.|..+|.+++.+|. +.|+++..+.
T Consensus 8 ~~~~~~~~~~l~~~~~~~~~~i~~a~~~~~~~l~~a-~~I~i~G~G~S~~~A~~~~~~l~~r~~~~r~g~~~~~~~~~~~ 86 (197)
T PRK13936 8 RQHFEDSIDTKQQAMEVLAPPIAQAVELMVQALLNE-GKILACGNGGSAADAQHFSAELLNRFERERPSLPAIALTTDTS 86 (197)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CEEEEEeCcHhHHHHHHHHHHccCccCCCCccceeEecCCcHH
Confidence 34555556666555555554 6677777888899 69999999999999999999998 7899887652
Q ss_pred -------Cccccccc----cCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccc---cCEEEEcC
Q 019775 88 -------PLDALHGD----IGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAV---CDMNVHLP 153 (336)
Q Consensus 88 -------~~~~~~~~----~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~---ad~~i~~~ 153 (336)
+....... ....+++|++|+||+||++++++++++.||++|+++|+||++.++|++++ ||++|.++
T Consensus 87 ~~~~~~~d~~~~~~~~~~~a~~~~~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v~ 166 (197)
T PRK13936 87 TLTAIANDYSYNEVFSKQVRALGQPGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRVP 166 (197)
T ss_pred HHHHHhhcCCHHHHHHHHHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEeC
Confidence 11111111 24468999999999999999999999999999999999999999999995 99999998
Q ss_pred CCcccCCCCCCChhHHHHHHHHHHHHHHHHHhh
Q 019775 154 VERELCPFDLAPVTSTAIQMVFGDTVAIAMMGA 186 (336)
Q Consensus 154 ~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~ 186 (336)
.... -...-.++++.++|...+...
T Consensus 167 ~~~~--------~~~~e~~~~~~h~l~~~v~~~ 191 (197)
T PRK13936 167 AERT--------ARIQEVHLLAIHCLCDLIDSQ 191 (197)
T ss_pred CCcH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 8644 124455566677666555443
No 21
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=99.82 E-value=3.5e-19 Score=158.17 Aligned_cols=187 Identities=15% Similarity=0.195 Sum_probs=139.2
Q ss_pred hHHHHHHHHHHHH---HHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHH-HHHHHHHHhcCCeeee---c---
Q 019775 17 ENTLLDLFKSQQD---HLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVA-NKISQTLISLGIKSGF---L--- 86 (336)
Q Consensus 17 ~~~~~~~~~~~~~---~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a-~~~~~~l~~~g~~~~~---~--- 86 (336)
.++++.+.+.... .+......+. +.++.+++.+.+. +|||++|.|+|..+| .++...+..+|.+... +
T Consensus 24 ~~~~~~~~~ed~~~~~av~~~l~~I~-~av~~~~~~l~~g-grI~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~iiag 101 (299)
T PRK05441 24 LEILRLINEEDKKVALAVEKALPQIA-AAVDAAAAALRQG-GRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAG 101 (299)
T ss_pred HHHHHHHHHhhHHHHHHHHHhHHHHH-HHHHHHHHHHHCC-CEEEEEcCcHHHHHHHHHHHhCcCccCCCchhceeeecC
Confidence 3444444444444 5555555554 5688888899999 599999999999999 6666677677775211 1
Q ss_pred ------------CCcccc---ccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEE
Q 019775 87 ------------NPLDAL---HGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVH 151 (336)
Q Consensus 87 ------------~~~~~~---~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~ 151 (336)
.+.... ......++++|++|++|.||++++++.+++.||++|+++|+||+++++|+++++|+.|.
T Consensus 102 G~~a~~~a~e~~ed~~~~~~~~l~~~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~La~~aD~~I~ 181 (299)
T PRK05441 102 GEKALTKAVEGAEDDAELGAADLKAINLTAKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPGSPLSKEADIAIE 181 (299)
T ss_pred CcHHHHhcccccCChHHHHHHHHHhcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHhCCEEEE
Confidence 111110 11134578999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHHHhhcCCCCchhhhh
Q 019775 152 LPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSL 207 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (336)
++++.+. ..+...+.+.+++++++|+|+..++.+.+..++.+ +-+-..++.|..
T Consensus 182 ~~~g~E~-~~~st~~~s~taqk~iLn~lst~~~~~~gkv~~n~-mvd~~~~n~kl~ 235 (299)
T PRK05441 182 VVVGPEV-LTGSTRMKAGTAQKLVLNMISTGVMIRLGKVYGNL-MVDVKATNEKLV 235 (299)
T ss_pred cCCCCcc-ccccccccchhHHHHHHHHHHHHHHHHccHHHHHH-HHHhcCCHHHHH
Confidence 9886653 33446678889999999999999999998766665 333333444443
No 22
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=99.82 E-value=2.9e-19 Score=144.11 Aligned_cols=130 Identities=19% Similarity=0.280 Sum_probs=106.4
Q ss_pred HHHHHHHHcCCCeEEEEeccchHHHHHHH------HHHHHhcCCeeeecC-Cccccc--------------cccCCCCCC
Q 019775 44 LTFTQTLLKCRGTIFFTGVGKSGFVANKI------SQTLISLGIKSGFLN-PLDALH--------------GDIGILSSD 102 (336)
Q Consensus 44 ~~~~~~i~~a~~~I~i~G~G~s~~~a~~~------~~~l~~~g~~~~~~~-~~~~~~--------------~~~~~~~~~ 102 (336)
+.+++++.++ +||+++|.|.|..+|+++ +++|.+.|+++.... +..... .....++++
T Consensus 2 ~~~~~~l~~a-~rI~~~G~G~S~~~A~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 80 (154)
T TIGR00441 2 VLLADSFKAG-GKVLICGNGGSACDAQHFAAELTGRYRENRPGLPAIALSADVSHLTCVSNDYGYEDVFSRQVEALGQKG 80 (154)
T ss_pred hHHHHHHHCC-CEEEEEeCcHHHHHHHHHHHHhhcccccCCCCceEEecCCcHHHHHHhhccCCHHHHHHHHHHHhCCCC
Confidence 5788999999 599999999999999999 467788899998876 321110 001246899
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHH
Q 019775 103 DILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIA 182 (336)
Q Consensus 103 dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~ 182 (336)
|++|+||+||++++++++++.||++|+++|+||++.++|++++||++|.++...+ --..-.+++++++|...
T Consensus 81 D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~ad~~l~~~~~~~--------~~~~~~~~~~~h~l~~~ 152 (154)
T TIGR00441 81 DVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGKMAGLADIELRVPHFYT--------PRIQEIHIKVIHILCQL 152 (154)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeCCCCc--------HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988644 12445667777776543
No 23
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=99.81 E-value=2.9e-19 Score=138.04 Aligned_cols=100 Identities=27% Similarity=0.315 Sum_probs=93.3
Q ss_pred eEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEE
Q 019775 56 TIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSV 134 (336)
Q Consensus 56 ~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~I 134 (336)
|||++|.|.|+.+|.+++++|.++ |+++....+.+.......+++++|++|++|+||++++++++++.||++|+++|+|
T Consensus 1 ~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~i 80 (120)
T cd05710 1 NVFFVGCGGSLADMYPAKYFLKKESKLPVFVYNAAEFLHTGPKRLTEKSVVILASHSGNTKETVAAAKFAKEKGATVIGL 80 (120)
T ss_pred CEEEEEecHHHHHHhHHHHHHHHhcCCceEEEcHHHHhhcCcccCCCCcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEE
Confidence 699999999999999999999997 7888888777766666678899999999999999999999999999999999999
Q ss_pred eCCCCCccccccCEEEEcCCC
Q 019775 135 TSVEGNALAAVCDMNVHLPVE 155 (336)
Q Consensus 135 T~~~~s~l~~~ad~~i~~~~~ 155 (336)
|++.++|++++||+++.++++
T Consensus 81 T~~~~s~la~~ad~~l~~~~~ 101 (120)
T cd05710 81 TDDEDSPLAKLADYVIVYGFE 101 (120)
T ss_pred ECCCCCcHHHhCCEEEEccCC
Confidence 999999999999999999887
No 24
>PRK13937 phosphoheptose isomerase; Provisional
Probab=99.81 E-value=1.4e-18 Score=144.81 Aligned_cols=136 Identities=18% Similarity=0.249 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHH------HHHHhcCCeeeecC-Cccc----------c----ccccCCC
Q 019775 41 PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKIS------QTLISLGIKSGFLN-PLDA----------L----HGDIGIL 99 (336)
Q Consensus 41 ~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~------~~l~~~g~~~~~~~-~~~~----------~----~~~~~~~ 99 (336)
+..+++++.|.++ +|||++|.|.|..+|.+++ +++.+.|+++..+. +... . ......+
T Consensus 26 ~aa~~i~~~l~~a-~rI~i~G~G~S~~~A~~~a~~~~~~~~~~r~g~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~ 104 (188)
T PRK13937 26 KVAEALIEALANG-GKILLCGNGGSAADAQHIAAELVGRFKKERPALPAIALTTDTSALTAIGNDYGFERVFSRQVEALG 104 (188)
T ss_pred HHHHHHHHHHHCC-CEEEEEeCcHhHHHHHHHHHHhhccccCCCCCcceEeccCcHHHHHHHhccCCHHHHHHHHHHhhC
Confidence 5667778888899 6999999999999887753 34456788888764 2111 0 1122357
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHH
Q 019775 100 SSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTV 179 (336)
Q Consensus 100 ~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l 179 (336)
+++|++|++|+||++++++++++.||++|+++|+||++.++|++++||++|.++.... ....-.++++.++|
T Consensus 105 ~~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~~~~~e~--------~~~~~~~~~~~~~l 176 (188)
T PRK13937 105 RPGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGKMKELCDHLLIVPSDDT--------PRIQEMHITIGHIL 176 (188)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCCCCc--------HHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999988643 12334456666666
Q ss_pred HHHHHh
Q 019775 180 AIAMMG 185 (336)
Q Consensus 180 ~~~~~~ 185 (336)
...+-+
T Consensus 177 ~~~~~~ 182 (188)
T PRK13937 177 CDLVER 182 (188)
T ss_pred HHHHHH
Confidence 655544
No 25
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=99.80 E-value=4.6e-18 Score=141.25 Aligned_cols=137 Identities=21% Similarity=0.299 Sum_probs=108.9
Q ss_pred hHHHHHHHHH----HcCCCeEEEEeccchHHHHHHHHHHHH------hcCCeeeecC-Cccccccc--------------
Q 019775 41 PHTLTFTQTL----LKCRGTIFFTGVGKSGFVANKISQTLI------SLGIKSGFLN-PLDALHGD-------------- 95 (336)
Q Consensus 41 ~~i~~~~~~i----~~a~~~I~i~G~G~s~~~a~~~~~~l~------~~g~~~~~~~-~~~~~~~~-------------- 95 (336)
+.++++++.+ .++ +|||++|.|.|...|++++.+|. +.|++++.+. +...+...
T Consensus 25 ~~i~~a~~~l~~~l~~~-~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~and~~~~~~f~~ql 103 (196)
T PRK10886 25 DAISRAAMTLVQSLLNG-NKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQV 103 (196)
T ss_pred HHHHHHHHHHHHHHHcC-CEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHhccccHHHHHHHHH
Confidence 5566666666 566 69999999999999999999985 6799999765 33222111
Q ss_pred cCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccc---cCEEEEcCCCcccCCCCCCChhHHHHH
Q 019775 96 IGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAV---CDMNVHLPVERELCPFDLAPVTSTAIQ 172 (336)
Q Consensus 96 ~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~---ad~~i~~~~~~~~~~~~~~~~~s~~~~ 172 (336)
....+++|++|+||.||++++++++++.||++|+++|+||++.++|++++ +|+++.+|.... -...-.+
T Consensus 104 ~~~~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~l~~~~D~~i~ip~~~~--------~~v~e~h 175 (196)
T PRK10886 104 RALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHRS--------ARIQEMH 175 (196)
T ss_pred HHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhccccCCEEEEcCCCch--------HHHHHHH
Confidence 23378999999999999999999999999999999999999999999997 799999998643 1244556
Q ss_pred HHHHHHHHHHHHhh
Q 019775 173 MVFGDTVAIAMMGA 186 (336)
Q Consensus 173 ~~l~d~l~~~~~~~ 186 (336)
+++.++|...+-+.
T Consensus 176 ~~i~H~l~~~v~~~ 189 (196)
T PRK10886 176 MLTVNCLCDLIDNT 189 (196)
T ss_pred HHHHHHHHHHHHHH
Confidence 67777776665433
No 26
>PRK13938 phosphoheptose isomerase; Provisional
Probab=99.80 E-value=4.1e-18 Score=141.69 Aligned_cols=136 Identities=21% Similarity=0.262 Sum_probs=107.3
Q ss_pred hHHHHHHHH----HHcCCCeEEEEeccchHHHHHHHHHHHH--------hcCCeeeecCCcccc-------------ccc
Q 019775 41 PHTLTFTQT----LLKCRGTIFFTGVGKSGFVANKISQTLI--------SLGIKSGFLNPLDAL-------------HGD 95 (336)
Q Consensus 41 ~~i~~~~~~----i~~a~~~I~i~G~G~s~~~a~~~~~~l~--------~~g~~~~~~~~~~~~-------------~~~ 95 (336)
+.++++++. +.+. +|||++|.|.|..+|.+|+.+|. ++|..+...++.... ...
T Consensus 29 ~~~~~~a~~~~~~l~~g-~rI~i~G~G~S~~~A~~fa~~L~~~~~~~r~~lg~~~l~~~~~~~~a~~nd~~~~~~~~~~~ 107 (196)
T PRK13938 29 EAARAIGDRLIAGYRAG-ARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHANSSHLTAVANDYDYDTVFARAL 107 (196)
T ss_pred HHHHHHHHHHHHHHHCC-CEEEEEeCcHHHHHHHHHHHHcCCCccCCcCccceEEEeCChHHHHHhhccccHHHHHHHHH
Confidence 455555555 6677 69999999999999999999997 455555554443321 222
Q ss_pred cCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHH
Q 019775 96 IGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVF 175 (336)
Q Consensus 96 ~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l 175 (336)
....+++|++|+||+||++++++++++.||++|+++|+||++.++|++++||++|.++.... -...-.++++
T Consensus 108 ~~~~~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~v~~~e~--------~~v~e~h~~~ 179 (196)
T PRK13938 108 EGSARPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLINVPSRDT--------GRIQESHIVF 179 (196)
T ss_pred HhcCCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEEeCCCch--------hhHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999988643 1244566777
Q ss_pred HHHHHHHHHh
Q 019775 176 GDTVAIAMMG 185 (336)
Q Consensus 176 ~d~l~~~~~~ 185 (336)
+++|...+-+
T Consensus 180 ~h~l~~~v~~ 189 (196)
T PRK13938 180 IHAISEHVEH 189 (196)
T ss_pred HHHHHHHHHH
Confidence 7777666543
No 27
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=99.80 E-value=3e-18 Score=149.22 Aligned_cols=217 Identities=17% Similarity=0.124 Sum_probs=147.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHhcCC--hhHHHHHHHHHHcCCCeEEEEeccchHHHHHH-HHHHHHhcCCee-----eec
Q 019775 15 VSENTLLDLFKSQQDHLNYFFQHLS--LPHTLTFTQTLLKCRGTIFFTGVGKSGFVANK-ISQTLISLGIKS-----GFL 86 (336)
Q Consensus 15 ~~~~~~~~~~~~~~~~l~~~~~~~~--~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~-~~~~l~~~g~~~-----~~~ 86 (336)
+..++.+.+.+.+....+.+.+.++ .+.++.+++.+.+. +|||++|.|+|..+|.. ....+..+|.+. +..
T Consensus 9 ~~~~~~~~~~~~~~~~~~av~~~l~~I~~av~~~~~~l~~g-grl~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~ia 87 (257)
T cd05007 9 STLEILRLLNEEDKKVAAAVEAALPQIARAVDAAAERLRAG-GRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIA 87 (257)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEEcCcHHHHHHHHHHHhccccccCCcccceEEEe
Confidence 3445555555555555544444443 25677777778888 69999999999988854 334444555522 111
Q ss_pred CCcc----------------ccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEE
Q 019775 87 NPLD----------------ALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNV 150 (336)
Q Consensus 87 ~~~~----------------~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i 150 (336)
.+.. ........++++|++|+||.||++++++.+++.||++|+++|+||+++++|+++++|++|
T Consensus 88 gg~~a~~~a~~~~edd~~~~~~~l~a~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~~aD~~I 167 (257)
T cd05007 88 GGEPALTRAVEGAEDDEEAGAADLQAINLTERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQLADIAI 167 (257)
T ss_pred CCHHHHHhhccccCChHHHHHHHHHHcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEE
Confidence 1100 111123456899999999999999999999999999999999999999999999999999
Q ss_pred EcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHHHhhcCCCCchhhhhhhhhhhccccCCCCccccCCCcH
Q 019775 151 HLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLI 230 (336)
Q Consensus 151 ~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~v 230 (336)
.++++.+. ..+...+++.+++.+++|+|+..++.+.+..+..+ +-+-...+.|.....++=+|.- .+.+-
T Consensus 168 ~~~~g~E~-~~~st~~~s~~aqk~vLn~L~t~~~~~~g~v~~n~-mvd~~~~n~kl~~ra~~i~~~~--------~~~~~ 237 (257)
T cd05007 168 ALITGPEV-VAGSTRLKAGTAQKLALNMLSTAVMIRLGKVYGNL-MVDVRATNEKLRERAIRIVMEA--------TGVSR 237 (257)
T ss_pred EcCCCCcc-ccCccccccHHHHHHHHHHHHHHHHHHcchHHHHH-HHHhhcCHHHHHHHHHHHHHHH--------HCcCH
Confidence 99887653 23446678899999999999999999988666554 2233334555433333322221 22344
Q ss_pred HHHHHHHHhcCc
Q 019775 231 MDQLVELTSKGC 242 (336)
Q Consensus 231 ~~~~~~~~~~~~ 242 (336)
.++.+.+.+.++
T Consensus 238 ~~a~~~l~~~~~ 249 (257)
T cd05007 238 DEAEAALEQAGG 249 (257)
T ss_pred HHHHHHHHHhCC
Confidence 666776665543
No 28
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=99.80 E-value=1.8e-18 Score=169.38 Aligned_cols=173 Identities=19% Similarity=0.171 Sum_probs=142.1
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhcCCh--hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecC
Q 019775 11 LPHKVSENTLLDLFKSQQDHLNYFFQHLSL--PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLN 87 (336)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~ 87 (336)
+.+...++.+.+.+.++.+.++++.+.... ..++..++.+.++ ++||++|+|+|+.+|..+.+.+.++ +..+....
T Consensus 245 ~~~~~~~~~m~~eI~eqP~~l~~~~~~~~~~~~~~~~~~~~l~~a-~~I~~~G~GsS~~aa~~a~~~~~~~~~~~~~~~~ 323 (604)
T PRK00331 245 AEKGGYRHFMLKEIYEQPEAIRDTLEGRLDELGEGELADEDLKKI-DRIYIVACGTSYHAGLVAKYLIESLAGIPVEVEI 323 (604)
T ss_pred hccCCCchHHHHHHHHHHHHHHHHHHhhhccccchhhhHHHHhcC-CEEEEEEeecHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 445677888999999999999999876432 3566668889999 6999999999999999988888876 55555443
Q ss_pred CccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChh
Q 019775 88 PLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVT 167 (336)
Q Consensus 88 ~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~ 167 (336)
. ..+......++++|++|++|+||+|++++++++.||++|+++|+||++.+|||+++||++|.++.+.+ .....+.
T Consensus 324 ~-~~~~~~~~~~~~~dlvI~iS~SG~T~e~i~a~~~ak~~ga~~IaIT~~~~S~La~~aD~~l~~~~~~e---~~~~~tk 399 (604)
T PRK00331 324 A-SEFRYRDPVLSPKTLVIAISQSGETADTLAALRLAKELGAKTLAICNVPGSTIARESDAVLYTHAGPE---IGVASTK 399 (604)
T ss_pred h-hhhhccCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChhHHhcCcEEEecCcCc---cchhhhH
Confidence 3 33333455678999999999999999999999999999999999999999999999999999987654 3335677
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q 019775 168 STAIQMVFGDTVAIAMMGARN 188 (336)
Q Consensus 168 s~~~~~~l~d~l~~~~~~~~~ 188 (336)
+.++++.++.+|...+....+
T Consensus 400 s~~s~l~~l~lL~~~~~~~~g 420 (604)
T PRK00331 400 AFTAQLAVLYLLALALAKARG 420 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 889999999999888887654
No 29
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=99.80 E-value=2.5e-18 Score=151.70 Aligned_cols=188 Identities=15% Similarity=0.133 Sum_probs=132.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCC--hhHHHHHHHHHHcCCCeEEEEeccchHHH-HHHHHHHHHhcCCeeeec------
Q 019775 16 SENTLLDLFKSQQDHLNYFFQHLS--LPHTLTFTQTLLKCRGTIFFTGVGKSGFV-ANKISQTLISLGIKSGFL------ 86 (336)
Q Consensus 16 ~~~~~~~~~~~~~~~l~~~~~~~~--~~~i~~~~~~i~~a~~~I~i~G~G~s~~~-a~~~~~~l~~~g~~~~~~------ 86 (336)
..++++.+.+........+...++ .+.++.+++.+.+. +|||++|.|.|..+ +.+....+..+|.+...+
T Consensus 18 ~~~~~~~~~~~d~~~~~av~~~l~~I~~av~~~~~~l~~g-Grl~~~G~G~Sg~l~~~DA~e~~~t~g~~~~~~~~~iaG 96 (291)
T TIGR00274 18 TLEIVRLINEEDKLVPLAIESVLPDIAAAVEQIVQAFQQG-GRLIYIGAGTSGRLGVLDASECPPTFGVSPELVKGIIAG 96 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CEEEEECCcHHHHHHHHHHHHhhhhcCCCHHHhhHHhcC
Confidence 334444444444444444444332 14556666677777 69999999999976 445555555556544321
Q ss_pred ------------CCcc---ccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEE
Q 019775 87 ------------NPLD---ALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVH 151 (336)
Q Consensus 87 ------------~~~~---~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~ 151 (336)
.+.. ........++++|++|+||.||++++++.+++.||++|+++|+||+++++++++++|+.|.
T Consensus 97 g~~a~~~~~e~~Ed~~~~~~~dl~~~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s~La~~aD~~I~ 176 (291)
T TIGR00274 97 GECAILHAVEGAEDSTEAGANDLQNIHLTKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSAASEIADIAIE 176 (291)
T ss_pred ChHHHhccchhhhcchHHHHHHHHhcCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEe
Confidence 0000 0111223588999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHHHhhcCCCCchhhh
Q 019775 152 LPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKS 206 (336)
Q Consensus 152 ~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (336)
++++.|. ..+...++|.+++++++|+|+..++.+.+..++-+ +-+-...+.|.
T Consensus 177 ~~~g~E~-~~~st~~~s~~aqk~iLd~L~t~~~~~~gk~~~n~-mvd~~~~N~kl 229 (291)
T TIGR00274 177 TIVGPEI-LTGSSRLKAGTAQKMVLNMLSTASMIKLGKVYENL-MVDVQASNEKL 229 (291)
T ss_pred cCCCCcc-ccccchhhHHHHHHHHHHHHHHHHHHhcchhhcCe-EEeeecccHHH
Confidence 8776553 34557789999999999999999999987554443 22333344443
No 30
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=99.78 E-value=6.4e-18 Score=153.78 Aligned_cols=135 Identities=13% Similarity=0.181 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHc--CCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCcccccccc
Q 019775 20 LLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLK--CRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDI 96 (336)
Q Consensus 20 ~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~--a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~ 96 (336)
+....+.+.+.+++.+++-. +.++++++.+.+ + ++|+++|+|+|+..|..+.+.|.++ ++++...++.+......
T Consensus 10 ~~~~~~~~~~~~~~~l~~~~-~~l~~~~~~l~~~~~-~~I~~~g~GsS~~aa~~~~~~~~k~~~i~v~~~~~~~~~~~~~ 87 (340)
T PRK11382 10 DFLVTENMVQEVEKVLSHDV-PLVHAIVEEMVKRDI-DRIYFVACGSPLNAAQTAKHLADRFSDLQVYAISGWEFCDNTP 87 (340)
T ss_pred HHHHHhhchHHHHHHHHhhh-HHHHHHHHHHHhCCC-CEEEEEEechHHHHHHHHHHHHHHHcCCCeEEeccHHHHhcCC
Confidence 44556777777777776665 668899999875 7 6999999999999999999888776 55777777777765555
Q ss_pred CCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCc
Q 019775 97 GILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVER 156 (336)
Q Consensus 97 ~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~ 156 (336)
..++++|++|++|+||+|.+++++++.||++|+++|+||++.+|||+++||+++.+.++.
T Consensus 88 ~~~~~~~lvI~iS~SGeT~e~i~al~~ak~~Ga~~I~IT~~~~S~L~~~ad~~l~~~ag~ 147 (340)
T PRK11382 88 YRLDDRCAVIGVSDYGKTEEVIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQADC 147 (340)
T ss_pred cCCCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEeCCCc
Confidence 568899999999999999999999999999999999999999999999999999998653
No 31
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=99.77 E-value=1.2e-17 Score=163.70 Aligned_cols=234 Identities=16% Similarity=0.134 Sum_probs=162.6
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhcCC-h--hHHHHH--HHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeee
Q 019775 12 PHKVSENTLLDLFKSQQDHLNYFFQHLS-L--PHTLTF--TQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGF 85 (336)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~--~~i~~~--~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~ 85 (336)
.+...++.+.+.+.++.+.++++.+... . ..++.+ .+.+.++ ++||++|+|+|+.++..+.+.+.++ +..+..
T Consensus 245 ~~~~~~~~m~~eI~eqP~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~-~~I~~~G~GsS~~aa~~a~~~~~~~~~i~~~~ 323 (607)
T TIGR01135 245 EKGGYRHFMLKEIYEQPRALRDTLEGRISEAGVVLEELGAEELLKNV-DRIQIVACGTSYHAGLVAKYLIERLAGIPVEV 323 (607)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHhhhhcccchhhccchhHhccC-CEEEEEEeechHHHHHHHHHHHHHhcCCCEEE
Confidence 3466788888999999999998886522 1 123333 2457788 6999999999988887777776655 555555
Q ss_pred cCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCC
Q 019775 86 LNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAP 165 (336)
Q Consensus 86 ~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~ 165 (336)
....+ +......++++|++|+||+||+|++++++++.||++|+++|+||++.+|||+++||++|.++.+.+ .....
T Consensus 324 ~~~~~-~~~~~~~~~~~dlvI~iS~SG~T~e~v~a~~~ak~~ga~~IaIT~~~~S~La~~ad~~l~~~~~~e---~~~~~ 399 (607)
T TIGR01135 324 EIASE-FRYRKPVVDKDTLVIAISQSGETADTLAALRLAKELGAKTLGICNVPGSTLVRESDHTLYTRAGPE---IGVAS 399 (607)
T ss_pred ecHHH-HhhcCCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCChHHhhcCceEEecCCCc---cchhh
Confidence 44332 233445678999999999999999999999999999999999999999999999999999987654 33345
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCC-ChHHHhhcCCCCchhhhhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcce
Q 019775 166 VTSTAIQMVFGDTVAIAMMGARNL-TRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGC 244 (336)
Q Consensus 166 ~~s~~~~~~l~d~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 244 (336)
+.+.+++++++++|+..+...++. ..+++.+.. ..+. .+.+.+.. .+..+..+.+..+.+. +.+.
T Consensus 400 tks~~s~l~~l~lL~~~l~~~~g~~~~~~~~~~~--~~l~-----~l~~~~~~-----~~~~~~~~~~~a~~l~--~~~~ 465 (607)
T TIGR01135 400 TKAFTTQLTVLYLLALKLAKARGTLSAEEEAELV--DGLR-----RLPALVEQ-----VLKLEESIAELAERYA--DKHN 465 (607)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH--HHHH-----HHHHHHHH-----HHhCcHHHHHHHHHhh--CCCc
Confidence 779999999999999999887652 223221110 0111 11111111 1222222444444443 3456
Q ss_pred EEEEcCCCcEEEEeeHHHHHH
Q 019775 245 LLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 245 ipVvd~~~~~~G~it~~dl~~ 265 (336)
+.++.. |-..|+..+..|.-
T Consensus 466 ~~~lG~-G~~~g~A~E~aLKl 485 (607)
T TIGR01135 466 FLFLGR-GLGYPIALEGALKL 485 (607)
T ss_pred EEEEeC-CCCHHHHHHHHHHH
Confidence 788874 66778888888743
No 32
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.76 E-value=3.1e-17 Score=161.18 Aligned_cols=164 Identities=17% Similarity=0.140 Sum_probs=127.1
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc
Q 019775 10 LLPHKVSENTLLDLFKSQQDHLNYFFQHLS----------LPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL 79 (336)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~ 79 (336)
..++...++.+.+.+.++.+.++++.++.. ...++++++.+.++ ++|+++|+|+|+.+|.++++.|.++
T Consensus 269 ~~~k~~~~~~m~kEI~EqP~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~I~i~g~GsS~~aa~~~~~~l~~~ 347 (640)
T PTZ00295 269 EKSPEPYPHWTLKEIFEQPIALSRALNNGGRLSGYNNRVKLGGLDQYLEELLNI-KNLILVGCGTSYYAALFAASIMQKL 347 (640)
T ss_pred hhcCCCchHHHHHHHHHHHHHHHHHhhcccceeccCCccchhhhHHHHHHHhcC-CEEEEEEeehHHHHHHHHHHHHHHh
Confidence 345567788999999999999999983221 12366777888899 6999999999999999999999998
Q ss_pred CCe--eeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775 80 GIK--SGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE 157 (336)
Q Consensus 80 g~~--~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~ 157 (336)
+.. +....+..... ....+++|++|++|+||+|.+++++++.||++|+++|+||++.+|+|+++||++|.++++.+
T Consensus 348 ~~~~~v~~~~~s~~~~--~~~~~~~~lvI~ISqSGeT~d~i~al~~ak~~Ga~~IaITn~~~S~La~~ad~~l~~~ag~E 425 (640)
T PTZ00295 348 KCFNTVQVIDASELTL--YRLPDEDAGVIFISQSGETLDVVRALNLADELNLPKISVVNTVGSLIARSTDCGVYLNAGRE 425 (640)
T ss_pred CCCCceEEechHHhhh--hccCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCCEEEEECCCCChhHHhcCEEEEeCCcCc
Confidence 553 44444333332 22456899999999999999999999999999999999999999999999999999987655
Q ss_pred cCCCCCCChhHHHHHHHHH
Q 019775 158 LCPFDLAPVTSTAIQMVFG 176 (336)
Q Consensus 158 ~~~~~~~~~~s~~~~~~l~ 176 (336)
........+++.+..++++
T Consensus 426 ~~v~~Tk~~ts~l~~l~ll 444 (640)
T PTZ00295 426 VAVASTKAFTSQVTVLSLI 444 (640)
T ss_pred ccccccccHHHHHHHHHHH
Confidence 3222222344555555544
No 33
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=99.76 E-value=4.3e-17 Score=160.39 Aligned_cols=170 Identities=24% Similarity=0.279 Sum_probs=132.3
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhc-C-C----------hhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHh
Q 019775 11 LPHKVSENTLLDLFKSQQDHLNYFFQH-L-S----------LPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLIS 78 (336)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-~----------~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~ 78 (336)
..+...++.+.+.+.++.+.++++.+. + + ...+.++++.+.++ ++|+++|+|+|+.+|..+++.|.+
T Consensus 309 ~~k~~y~~~m~kEI~EQP~~l~~~l~~r~~~~~~~~~~~~~l~~l~~~~~~l~~~-~~I~~~G~GsS~~aa~~a~~~l~k 387 (680)
T PLN02981 309 IMKGNYDHYMQKEIHEQPESLTTTMRGRLIRGGSGKAKRVLLGGLKDHLKTIRRS-RRIVFIGCGTSYNAALAARPILEE 387 (680)
T ss_pred hccCCCCchHHHHHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHhcC-CEEEEEEecHHHHHHHHHHHHHHH
Confidence 445677888999999999999998864 2 1 14577788888999 699999999999999988888887
Q ss_pred c-CCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775 79 L-GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE 157 (336)
Q Consensus 79 ~-g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~ 157 (336)
+ |+++....+.+..... ....++|++|++|+||+|.+++++++.||++|+++|+||++.+|+|++.||+++.++.+.+
T Consensus 388 l~~i~v~~~~~sef~~~~-~~~~~~~lvI~ISqSGeT~eti~Al~~Ak~~Ga~~IaITn~~~S~La~~ad~~i~~~~g~E 466 (680)
T PLN02981 388 LSGVPVTMELASDLLDRQ-GPIYREDTAVFVSQSGETADTLRALEYAKENGALCVGITNTVGSAISRGTHCGVHINAGAE 466 (680)
T ss_pred HhCCCEEEecchHHHhcc-ccCCCCCeEEEEeCCcCCHHHHHHHHHHHHCCCcEEEEECCCCChhHhccCeeEEecCccc
Confidence 5 7777766555443332 2356799999999999999999999999999999999999999999999999999988665
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHHHHh
Q 019775 158 LCPFDLAPVTSTAIQMVFGDTVAIAMMG 185 (336)
Q Consensus 158 ~~~~~~~~~~s~~~~~~l~d~l~~~~~~ 185 (336)
.. ...+.+.++++.++-++...+..
T Consensus 467 ~~---~a~Tksfts~~~~l~llal~l~~ 491 (680)
T PLN02981 467 IG---VASTKAYTSQIVAMTMLALALGE 491 (680)
T ss_pred cc---ccccccHHHHHHHHHHHHHHHHh
Confidence 32 23334445555555555544543
No 34
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.76 E-value=4.1e-17 Score=159.89 Aligned_cols=172 Identities=19% Similarity=0.220 Sum_probs=127.4
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhc-CCh-------hHH-HHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-C
Q 019775 11 LPHKVSENTLLDLFKSQQDHLNYFFQH-LSL-------PHT-LTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-G 80 (336)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~-------~~i-~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g 80 (336)
.+....++.+.+.+.++.+.+.+++.. ++. +.+ .+.++.+.++ ++|+++|+|+|+.+|..+.+.+.++ +
T Consensus 303 ~~k~~y~hfMlkEI~EQP~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~a-~rI~ivG~GtS~~aa~~ak~~~~kl~~ 381 (670)
T PTZ00394 303 LSKGNYPHFMLKEIYEQPESVISSMHGRIDFSSGTVQLSGFTQQSIRAILTS-RRILFIACGTSLNSCLAVRPLFEELVP 381 (670)
T ss_pred hhcCCCchHHHHHHHhhHHHHHHHHHhhhhhccCcccchhhHHHHHHHHhCC-CEEEEEEechHHHHHHHHHHHHHHhcC
Confidence 334566788888899999999988754 210 223 3455778899 6999999999998888766666554 3
Q ss_pred CeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCC
Q 019775 81 IKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCP 160 (336)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~ 160 (336)
..+...... .+......++++|++|++|+||+|.+++++++.||++|+++|+||++.+|+|++.||++|.++++.+
T Consensus 382 i~v~v~~as-ef~~~~~~~~~~dlvI~ISqSGeT~dtl~Al~~Ak~~Ga~tIaITn~~~S~La~~AD~~l~~~ag~E--- 457 (670)
T PTZ00394 382 LPISVENAS-DFLDRRPRIQRDDVCFFVSQSGETADTLMALQLCKEAGAMCVGITNVVGSSISRLTHYAIHLNAGVE--- 457 (670)
T ss_pred CCEEEeccc-hhhhhccCCCCCCEEEEEECCcCcHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhcCeEEEeccccc---
Confidence 444333332 2333445678999999999999999999999999999999999999999999999999999987665
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhc
Q 019775 161 FDLAPVTSTAIQMVFGDTVAIAMMGAR 187 (336)
Q Consensus 161 ~~~~~~~s~~~~~~l~d~l~~~~~~~~ 187 (336)
.....+.+.++++.++.++...+...+
T Consensus 458 ~~va~Tks~tsql~~l~llal~la~~~ 484 (670)
T PTZ00394 458 VGVASTKAYTSQVVVLTLVALLLSSDS 484 (670)
T ss_pred ccccccHhHHHHHHHHHHHHHHHHHhc
Confidence 223444556666665555555555443
No 35
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=99.75 E-value=6.9e-17 Score=143.06 Aligned_cols=195 Identities=15% Similarity=0.120 Sum_probs=134.6
Q ss_pred cccCCCCcchHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHH-hcCCeeee-
Q 019775 8 LDLLPHKVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLI-SLGIKSGF- 85 (336)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~-~~g~~~~~- 85 (336)
+|..+..+.-..+.+--....+.+......+ .+.++.+++.+.+. +|||++|.|+|..+|...+..+. .++.....
T Consensus 14 ld~~~~~~~~~~~~~~d~~~~~av~~~~~~I-~~a~~~~~~~l~~g-grl~~~GaG~Sg~la~~dA~e~~~tf~~~~~~~ 91 (296)
T PRK12570 14 IDLLSSLDIVTLINQEDKKVPLAVEKVLPQI-AQAVDKIVAAFKKG-GRLIYMGAGTSGRLGVLDASECPPTFSVSPEMV 91 (296)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHcC-CeEEEECCchhHHHHHHHHHhCcchhcCCcccc
Confidence 4444444444444444444444454455445 35666777778888 69999999999988655544432 23332211
Q ss_pred ----cC-------------Cccc-cc--cccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccc
Q 019775 86 ----LN-------------PLDA-LH--GDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAV 145 (336)
Q Consensus 86 ----~~-------------~~~~-~~--~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ 145 (336)
.. +... .. .....++++|++|++|.||++++++.+++.||++|+++|+||++++++++++
T Consensus 92 ~~~iagg~~a~~~a~~~~ed~~~~~~~~l~a~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~s~La~~ 171 (296)
T PRK12570 92 IGLIAGGPEAMFTAVEGAEDDPELGAQDLKAIGLTADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDSPIAKI 171 (296)
T ss_pred eeeeecCchHhhhcccccCCcHHHHHHHHHHcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHh
Confidence 10 0000 00 1123468999999999999999999999999999999999999999999999
Q ss_pred cCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHHHhhcCCCCchhhh
Q 019775 146 CDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKS 206 (336)
Q Consensus 146 ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (336)
+|+.|.+..+.+. ..+...+++.+++++++|+|+..++.+.+..++.+ +-+-...+.|.
T Consensus 172 aD~~I~~~~g~E~-~~~st~~~s~taqk~vLd~L~t~~~~r~Gk~~~n~-mvd~~~~n~kl 230 (296)
T PRK12570 172 ADIAISPVVGPEV-LTGSTRLKSGTAQKMVLNMLSTASMIRLGKSYQNL-MVDVKATNEKL 230 (296)
T ss_pred CCEEEeeCcCCcc-ccccchHHHHHHHHHHHHHHHHHHHHhcchhhcCe-EEEeecchHHH
Confidence 9999987665552 34557789999999999999999999988554443 33333444443
No 36
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.75 E-value=9.9e-18 Score=139.17 Aligned_cols=122 Identities=20% Similarity=0.288 Sum_probs=111.9
Q ss_pred hhhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcC
Q 019775 205 KSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCN 284 (336)
Q Consensus 205 ~~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~ 284 (336)
.....+|.++|.++ +.++.+++|++++..+|.++++++.||+|++ +++|++|..|+...+.+.. ...++.++|.
T Consensus 168 siPk~~V~~~~s~~--~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d-k~vGiit~~dI~~aia~g~---~~~kV~~~M~ 241 (294)
T COG2524 168 SIPKEKVKNLMSKK--LITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLSDIAKAIANGN---LDAKVSDYMR 241 (294)
T ss_pred ecCcchhhhhccCC--ceEecCCccHHHHHHHHHHcCccCCceecCC-ceEEEEEHHHHHHHHHcCC---ccccHHHHhc
Confidence 34456999999998 5699999999999999999999999999965 9999999999999988633 3789999999
Q ss_pred CCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 285 RSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 285 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
++++++.+|+.+.||++.|..+ ++.++.|+|.+|+++|+||+.||++.
T Consensus 242 k~vitI~eDe~i~dAir~M~~~--nVGRLlV~ds~gkpvGiITrTDIL~~ 289 (294)
T COG2524 242 KNVITINEDEDIYDAIRLMNKN--NVGRLLVTDSNGKPVGIITRTDILTR 289 (294)
T ss_pred cCCceEcCchhHHHHHHHHHhc--CcceEEEEccCCcEEEEEehHHHHHH
Confidence 9999999999999999999999 99999999988999999999999874
No 37
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=99.71 E-value=1.5e-16 Score=122.82 Aligned_cols=96 Identities=26% Similarity=0.346 Sum_probs=84.4
Q ss_pred eEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEE
Q 019775 56 TIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSV 134 (336)
Q Consensus 56 ~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~I 134 (336)
+||++|.|.|+.+|+++++.|... |+++....+... ..+++++|++|++|+||++++++++++.||++|+++|+|
T Consensus 1 ~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~I 76 (119)
T cd05017 1 NIVILGMGGSGIGGDLLESLLLDEAKIPVYVVKDYTL----PAFVDRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAI 76 (119)
T ss_pred CEEEEEcCHHHHHHHHHHHHHHhccCCCEEEecCccC----cCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 599999999999999999999984 999998876432 236789999999999999999999999999999999999
Q ss_pred eCCCCCccccccC----EEEEcCCCcc
Q 019775 135 TSVEGNALAAVCD----MNVHLPVERE 157 (336)
Q Consensus 135 T~~~~s~l~~~ad----~~i~~~~~~~ 157 (336)
|++ ++++++|| .++.+|.+..
T Consensus 77 T~~--~~l~~~~~~~~~~~~~~p~~~~ 101 (119)
T cd05017 77 TSG--GKLLEMAREHGVPVIIIPKGLQ 101 (119)
T ss_pred eCC--chHHHHHHHcCCcEEECCCCCC
Confidence 974 57999999 7888887654
No 38
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=99.71 E-value=3e-16 Score=126.81 Aligned_cols=141 Identities=18% Similarity=0.241 Sum_probs=124.3
Q ss_pred HHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcC-CeeeecCCccccccccCCCCCCcEEEEEeCCCCcHH-HHH
Q 019775 42 HTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLG-IKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEE-LLK 119 (336)
Q Consensus 42 ~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~-~~~ 119 (336)
.++++++.+.++ ++|+++|.|.|+.+|.+++.+|.+.+ +++....+.+.++.....+++++++|++|.+|.+.+ +.+
T Consensus 2 ~~~~~a~~~~~~-~~i~~~G~G~s~~~a~e~~~kl~e~~~i~~~~~~~~e~~hg~~~~~~~~~~vi~is~~g~t~~~~~~ 80 (153)
T cd05009 2 DIKELAEKLKEA-KSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIALVDEGTPVIFLAPEDRLEEKLES 80 (153)
T ss_pred hHHHHHHHHhcc-CcEEEEcCCCCHHHHHHHHHHHHHHHhhcceeccHHHhccChhhhccCCCcEEEEecCChhHHHHHH
Confidence 578899999999 69999999999999999999999996 799999888888888888999999999999999765 899
Q ss_pred HHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHH
Q 019775 120 VVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDE 193 (336)
Q Consensus 120 ~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~ 193 (336)
+++.+|++|+++++||++..+ .+.+|+.+.++...+ . .+.+..+..+.++...+...++..++.
T Consensus 81 ~~~~~~~~~~~vi~it~~~~s--~~~~d~~i~~~~~~~-------~-~~~~~~~~~~q~la~~~a~~~g~~~~~ 144 (153)
T cd05009 81 LIKEVKARGAKVIVITDDGDA--KDLADVVIRVPATVE-------E-LSPLLYIVPLQLLAYHLAVARGIDPDK 144 (153)
T ss_pred HHHHHHHcCCEEEEEecCCcc--cccCCeEEECCCCch-------h-HHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999887 899999999988644 1 356677888899999999888766554
No 39
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=99.70 E-value=4.9e-16 Score=139.20 Aligned_cols=137 Identities=24% Similarity=0.295 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCC-CeEEEEeccchHHHHHHHHHHHH-hcCCeeeecCCccccccccC
Q 019775 20 LLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCR-GTIFFTGVGKSGFVANKISQTLI-SLGIKSGFLNPLDALHGDIG 97 (336)
Q Consensus 20 ~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~-~~I~i~G~G~s~~~a~~~~~~l~-~~g~~~~~~~~~~~~~~~~~ 97 (336)
+.+-.++..+.+..+++... ..++++.+.+.+.+ .+|+++|+|+|..++..+.+.+. ..|..+..++.++.......
T Consensus 5 m~~e~~~~p~~~~~~~~~~~-~~~~~l~~~l~~~~~~~I~~~g~GsS~~~~~~~~~~~~~~~~~~~~~~~~se~~~~~~~ 83 (340)
T COG2222 5 MLREIEQQPAVVARLLEANR-AVLAELADFLRKRGIDRILFVGCGSSLHAATPAKYLLERELGLLVAAIPASEFLTNGAK 83 (340)
T ss_pred hHHHHHhhHHHHHHHHHhhh-hHHHHHHHHHHhCCCcEEEEEecCchHHHHHHHHHHHHHhhCceeeeechhHHhccCcc
Confidence 44556667777777765554 77888888888773 59999999999999999999999 55888788888888888888
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775 98 ILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE 157 (336)
Q Consensus 98 ~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~ 157 (336)
...++.++|++|+||+|+|++.+++.||+.|+.+|+||+..+||+++.||++|.++.+.+
T Consensus 84 ~~~~~~lvi~~S~SG~TpE~vaa~~~a~~~ga~~i~lT~~~dSpLa~~ad~~i~~~~~~e 143 (340)
T COG2222 84 YLGEDSLVIAFSQSGNTPESVAAAELAKEGGALTIALTNEEDSPLARAADYVIPYLAGEE 143 (340)
T ss_pred ccCCCeEEEEEeCCCCCHHHHHHHHHhccCCCeEEEEecCCCChhhhcCCeeeeccCCch
Confidence 888999999999999999999999999999999999999999999999999999999877
No 40
>TIGR02815 agaS_fam putative sugar isomerase, AgaS family. Some members of this protein family are found in regions associated with N-acetyl-galactosamine and galactosamine untilization and are suggested to be isomerases.
Probab=99.69 E-value=7.1e-16 Score=141.81 Aligned_cols=155 Identities=23% Similarity=0.280 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHhcCC--hhHHHHHHHHHHcCC-CeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCC
Q 019775 24 FKSQQDHLNYFFQHLS--LPHTLTFTQTLLKCR-GTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGIL 99 (336)
Q Consensus 24 ~~~~~~~l~~~~~~~~--~~~i~~~~~~i~~a~-~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~ 99 (336)
+.++.+.++++...++ .+.++++++.+.+.+ ++|+++|+|+|++.|..+.+.|.+. |.++....+.+.........
T Consensus 9 I~eqP~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~GsS~~a~~~~~~~~~~~~~i~v~~~~~~e~~~~~~~~~ 88 (372)
T TIGR02815 9 IRQQPALWRRLLTIIQALRPALNAFLEPLLARENLRIVLTGAGTSAFIGDALAPWLASHTGLNVSAVPTTDLVSNPRQYL 88 (372)
T ss_pred HHHChHHHHHHHHHHHHhHHHHHHHHHHHHhCCCCEEEEEechHHHHHHHHHHHHHHHhcCCCEEEEeCccccccccccc
Confidence 3444555554333222 256778887765432 6999999999999999999999874 89988887665444333333
Q ss_pred --CCCcEEEEEeCCCCcHHHHHHHHHHHHc--CCeEEEEeCCCCCccccccC-----EEEEcCCCcccCCCCCCChhHHH
Q 019775 100 --SSDDILVMFSKSGNTEELLKVVPCAKAK--GAYLVSVTSVEGNALAAVCD-----MNVHLPVERELCPFDLAPVTSTA 170 (336)
Q Consensus 100 --~~~dlvi~iS~sG~~~~~~~~~~~ak~~--g~~vi~IT~~~~s~l~~~ad-----~~i~~~~~~~~~~~~~~~~~s~~ 170 (336)
++++++|++|+||+|.+++++++.||++ |+++++||++.+|+|++.|| +++.++.+.+ ..+...+.|.+
T Consensus 89 ~~~~~~lvi~iSqSGeT~etv~a~~~ak~~~~g~~~i~it~~~~s~la~~ad~~~~~~~i~~~ag~~--e~gva~Tksft 166 (372)
T TIGR02815 89 DPTRPTLLVSFARSGNSPESVAAVELADQLLPECYHLVLTCNEEGALYRNAINRSNAFALLMPAESN--DRSFAMTSSFS 166 (372)
T ss_pred CCCCCeEEEEEeCCcCcHHHHHHHHHHHHhCCCCcEEEEEcCCCCHHHHhhcccCceeEEEccCCCc--cceeeeHHHHH
Confidence 3579999999999999999999999998 89999999999999999999 8888887633 24556666777
Q ss_pred HHHHHHHHHH
Q 019775 171 IQMVFGDTVA 180 (336)
Q Consensus 171 ~~~~l~d~l~ 180 (336)
++++.+.+++
T Consensus 167 ~~l~al~~l~ 176 (372)
T TIGR02815 167 CMTLATLAVL 176 (372)
T ss_pred HHHHHHHHHH
Confidence 7777776663
No 41
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=99.66 E-value=2.3e-15 Score=141.66 Aligned_cols=175 Identities=17% Similarity=0.138 Sum_probs=137.6
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHHHHHhcC-Ch-hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeee
Q 019775 9 DLLPHKVSENTLLDLFKSQQDHLNYFFQHL-SL-PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGF 85 (336)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~-~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~ 85 (336)
+..+.....+.+.+.+.++.+.+.++.+.. +. .....-.+.+.+. +||+|+|+|+|++.+....+.|.++ +.++..
T Consensus 237 ~~a~Kg~y~hfMlKEI~EQP~~i~~tl~~~~~~~~~~~~~~~~~~~~-~rI~IvAcGTSYhAglv~ky~~E~la~ipv~V 315 (597)
T COG0449 237 CAAEKGGFRHFMLKEIYEQPEALRNTLQGRLDELVQNELDLDILREV-DRIIIVACGTSYHAGLVAKYFFERLAKIPVEV 315 (597)
T ss_pred hHHhcCCCCchHHHHHHhhHHHHHHHHHhhhhhhhhhhhchhhhccc-ceEEEEECcHHHHHHHHHHHHHHHHhCCCeEE
Confidence 334455677888888999999999888853 21 1111112255688 6999999999999888888888877 466655
Q ss_pred cCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCC
Q 019775 86 LNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAP 165 (336)
Q Consensus 86 ~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~ 165 (336)
.-.++. .+....+.+++++|++|+||+|.+++.+++.+|++|+++++|||..+|++++.+|+.+.+.++.| -....
T Consensus 316 e~aSEf-ry~~~~~~~~~L~I~ISQSGETaDTl~ALr~ak~~G~~tlaItNv~gSti~Resd~~l~~~AGpE---igVAs 391 (597)
T COG0449 316 EEASEF-RYREPALNPNTLVIAISQSGETADTLAALRLAKEQGAKTLAITNVPGSTIARESDHTLLIRAGPE---IGVAS 391 (597)
T ss_pred Eeechh-hhhccCCCCCcEEEEEccCcccHHHHHHHHHHHHcCCCEEEEEecCCChhhcccceEEEeccCCc---eeeec
Confidence 444433 33445567889999999999999999999999999999999999999999999999999999988 55567
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcC
Q 019775 166 VTSTAIQMVFGDTVAIAMMGARN 188 (336)
Q Consensus 166 ~~s~~~~~~l~d~l~~~~~~~~~ 188 (336)
+.+.++|+..+-+|...+.+.++
T Consensus 392 TKaftaQl~~L~lLal~~a~~~g 414 (597)
T COG0449 392 TKAFTAQVLALYLLALYLAKQRG 414 (597)
T ss_pred chhHHHHHHHHHHHHHHHhHhhC
Confidence 77778888888788888887764
No 42
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.66 E-value=6.9e-16 Score=118.93 Aligned_cols=119 Identities=24% Similarity=0.328 Sum_probs=105.8
Q ss_pred hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCC
Q 019775 208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSP 287 (336)
Q Consensus 208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~ 287 (336)
.+++..+|..+ ++.+.+++++.+++++|.+++++++||+++ ++++|-||++++.+.+.+...+.....+.++|..++
T Consensus 64 ~ita~~iM~sp--vv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~f 140 (187)
T COG3620 64 RITAKTIMHSP--VVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGMESIRSLRVREVMGEPF 140 (187)
T ss_pred eEeHhhhccCC--eeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccccchhhhhHHHHhcCCC
Confidence 45778889887 779999999999999999999999999995 899999999999999887656566788999999999
Q ss_pred eeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 288 RTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 288 ~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
+.|+++.++..+.+++..+ ..+.|+++ |+++|+||+.||++.
T Consensus 141 P~Vs~~~~l~vI~~LL~~~----~AVlV~e~-G~~vGIITk~DI~k~ 182 (187)
T COG3620 141 PTVSPDESLNVISQLLEEH----PAVLVVEN-GKVVGIITKADIMKL 182 (187)
T ss_pred CcCCCCCCHHHHHHHHhhC----CeEEEEeC-CceEEEEeHHHHHHH
Confidence 9999999999999998765 47888844 999999999999875
No 43
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.66 E-value=1.7e-15 Score=116.06 Aligned_cols=110 Identities=16% Similarity=0.231 Sum_probs=96.7
Q ss_pred ccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHHH
Q 019775 222 PVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQ 301 (336)
Q Consensus 222 ~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~ 301 (336)
.++++++++.++.+.|.+.++..+||+|++|+++|+++.+++..............++.++|.+++..+.+++++.++++
T Consensus 4 ~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~ 83 (114)
T cd04619 4 AKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHDVWQ 83 (114)
T ss_pred EEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHHHHH
Confidence 47899999999999999999999999998999999999999987654312122246788999889999999999999999
Q ss_pred HhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775 302 KMESPPSPVQFLPVINRQNILIGIVTLHGLVS 333 (336)
Q Consensus 302 ~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~ 333 (336)
.|.++ +.+.+||++++|+++|+|++.|+++
T Consensus 84 ~m~~~--~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 84 VMKQR--GLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred HHHHc--CCCeEEEECCCCcEEEEEEhHhhcc
Confidence 99999 9999999998899999999999975
No 44
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.65 E-value=2.5e-15 Score=115.06 Aligned_cols=111 Identities=22% Similarity=0.295 Sum_probs=97.4
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCC-CcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEE-YHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEA 299 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~-~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~ 299 (336)
+++++++.++.++++.|.+.+++.+||+|++ ++++|+++.++++..+..........++.++|.+++.++++++++.++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 82 (114)
T cd04630 3 VVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKYC 82 (114)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHHH
Confidence 5689999999999999998899999999987 899999999999986654322223467889998888999999999999
Q ss_pred HHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 300 MQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 300 ~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
++.|.+. +...+||+++ |+++|+|++.|++++
T Consensus 83 ~~~~~~~--~~~~~~Vvd~-~~~~Gvi~~~dl~~~ 114 (114)
T cd04630 83 ARLMERT--NIRRAPVVEN-NELIGIISLTDIFLA 114 (114)
T ss_pred HHHHHHc--CCCEeeEeeC-CEEEEEEEHHHhhcC
Confidence 9999998 8999999998 999999999999864
No 45
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=7.4e-15 Score=114.57 Aligned_cols=133 Identities=21% Similarity=0.303 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHc---CCCeEEEEeccchHHHHHHHHHHHH------hcCCeeeecC-Cccc--
Q 019775 24 FKSQQDHLNYFFQHLSLPHTLTFTQTLLK---CRGTIFFTGVGKSGFVANKISQTLI------SLGIKSGFLN-PLDA-- 91 (336)
Q Consensus 24 ~~~~~~~l~~~~~~~~~~~i~~~~~~i~~---a~~~I~i~G~G~s~~~a~~~~~~l~------~~g~~~~~~~-~~~~-- 91 (336)
+....+......+ .-.+.++++++++.+ .+++|.++|.|.|+.-|++|+..|. |.+.+++.++ +..-
T Consensus 9 ~~es~~~~~~~~~-~l~~~I~~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lT 87 (176)
T COG0279 9 FTESIQTQIAALE-ALIEAIERAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLT 87 (176)
T ss_pred HHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHh
Confidence 3333333333332 223666676666642 2379999999999999999887665 3488888877 2111
Q ss_pred -cccc-----------cCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775 92 -LHGD-----------IGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE 157 (336)
Q Consensus 92 -~~~~-----------~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~ 157 (336)
+.+. -..-.++|++|.||.||++++++++++.||++|++||++|++.+..++.++|+.|.+|+...
T Consensus 88 ai~NDy~yd~vFsRqveA~g~~GDvLigISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~~~~D~~i~VPs~~t 165 (176)
T COG0279 88 AIANDYGYDEVFSRQVEALGQPGDVLIGISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLAGLLDVEIRVPSTDT 165 (176)
T ss_pred hhhccccHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCEEEEEecCCCcccccccceEEecCCCcc
Confidence 1111 11268999999999999999999999999999999999999999999999999999999754
No 46
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.63 E-value=3.1e-15 Score=114.04 Aligned_cols=108 Identities=16% Similarity=0.210 Sum_probs=94.2
Q ss_pred ccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHHH
Q 019775 222 PVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQ 301 (336)
Q Consensus 222 ~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~ 301 (336)
.+++++.++.++.+.|.+.+.+.+||+|++|+++|+++..|+...... .....++.++|..++..+.+++++.++++
T Consensus 4 ~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~---~~~~~~v~~~~~~~~~~v~~~~~l~~al~ 80 (111)
T cd04603 4 VSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPN---DYETLKVCEVYIVPVPIVYCDSKVTDLLR 80 (111)
T ss_pred EEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhccc---cccccChhheeecCCcEECCCCcHHHHHH
Confidence 478999999999999998889999999988999999999999873221 11134688889888889999999999999
Q ss_pred HhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 302 KMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 302 ~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
.|.++ +...+||+|++|+++|+||.+|+++.
T Consensus 81 ~m~~~--~~~~lpVvd~~~~~~Giit~~di~~~ 111 (111)
T cd04603 81 IFRET--EPPVVAVVDKEGKLVGTIYERELLRF 111 (111)
T ss_pred HHHHc--CCCeEEEEcCCCeEEEEEEhHHhhcC
Confidence 99999 89999999988999999999999863
No 47
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.62 E-value=8.6e-15 Score=113.12 Aligned_cols=112 Identities=19% Similarity=0.265 Sum_probs=92.3
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhH------hhhcCCCCeeeCCCc
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTV------GEMCNRSPRTIGPDA 294 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i------~~~~~~~~~~v~~~~ 294 (336)
+++++++.++.++.+.|.+++.+.+||+|++|+++|+++.+||..............++ ...|..++..+.+++
T Consensus 3 ~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 82 (120)
T cd04641 3 IATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSPDD 82 (120)
T ss_pred cEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEcCCC
Confidence 56899999999999999999999999999889999999999999765432221111112 233445567899999
Q ss_pred cHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 295 MAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 295 ~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
++.++++.|.++ +.+.+||+|++|+++|+||+.|+++.
T Consensus 83 ~l~~~~~~m~~~--~~~~l~Vvd~~~~~~Givt~~di~~~ 120 (120)
T cd04641 83 CLRTIFDLIVKA--RVHRLVVVDENKRVEGIISLSDILQF 120 (120)
T ss_pred cHHHHHHHHHhc--CccEEEEECCCCCEEEEEEHHHhhcC
Confidence 999999999999 99999999988999999999999863
No 48
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.61 E-value=4.2e-15 Score=110.69 Aligned_cols=94 Identities=19% Similarity=0.213 Sum_probs=85.2
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCC-CcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEE-YHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEA 299 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~-~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~ 299 (336)
+++++++.++.++.+.|.+++.+.+||+|++ |+++|++|..|+..... +.++.+++++.++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------~~~v~~~~~l~~a 64 (98)
T cd04618 3 LVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------LVSIHPERSLFDA 64 (98)
T ss_pred EEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------eEEeCCCCcHHHH
Confidence 5689999999999999999999999999974 89999999999986321 6789999999999
Q ss_pred HHHhcCCCCCccEeEEEeCC-CcEEEEEehhhHhhc
Q 019775 300 MQKMESPPSPVQFLPVINRQ-NILIGIVTLHGLVSA 334 (336)
Q Consensus 300 ~~~~~~~~~~~~~l~Vv~~~-~~~iGiit~~di~~~ 334 (336)
++.|.++ +.+.+||++++ |+++|+||.+|++++
T Consensus 65 ~~~m~~~--~~~~lpVvd~~~~~~~giit~~d~~~~ 98 (98)
T cd04618 65 ALLLLKN--KIHRLPVIDPSTGTGLYILTSRRILKF 98 (98)
T ss_pred HHHHHHC--CCCEeeEEECCCCCceEEeehhhhhcC
Confidence 9999999 99999999987 899999999999864
No 49
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.61 E-value=2.3e-14 Score=135.43 Aligned_cols=159 Identities=18% Similarity=0.182 Sum_probs=130.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHhhcCCChHHHhhcCCCCchhh--hhhhhhhhccccC-CCCccccCCCcHHHHHHHHHhc
Q 019775 164 APVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGK--SLIFKVQDVMKPQ-KELPVCKEGDLIMDQLVELTSK 240 (336)
Q Consensus 164 ~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~im~~~-~~~~~~~~~~~v~~~~~~~~~~ 240 (336)
.|+.|....+..=|.|...++...+.. ..|.+.+++. .+..+|+++|... ...++++++.|+.++++.|.++
T Consensus 52 iP~~SatmdtvtgdalAiala~~gG~g-----~Ih~n~sie~qa~lV~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~ 126 (502)
T PRK07107 52 IPLVSAIMQSVSDDNMAIALAREGGLS-----FIFGSQSIESEAAMVRRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKT 126 (502)
T ss_pred CChHHHHHHHHhhHHHHHHHHHcCCCe-----EeeCCCCHHHHHHHHHHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhc
Confidence 488999999999999999999998865 2233333333 3445788888632 1135899999999999999999
Q ss_pred CcceEEEEcC---CCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCC--CCeeeCCCccHHHHHHHhcCCCCCccEeEE
Q 019775 241 GCGCLLVIDE---EYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNR--SPRTIGPDAMAVEAMQKMESPPSPVQFLPV 315 (336)
Q Consensus 241 ~~~~ipVvd~---~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~l~V 315 (336)
+++.+||+|+ +++++|+||..|++... .....++.++|.+ ++.++.+++++.++++.|.++ +...+||
T Consensus 127 ~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~-----~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~--~i~~LPV 199 (502)
T PRK07107 127 GHSTVAVTEDGTAHGKLLGIVTSRDYRISR-----MSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDH--KLNTLPI 199 (502)
T ss_pred CCCeEEEEeCCCcCCEEEEEEEcHHhhccc-----cCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHc--CCCEEEE
Confidence 9999999996 58999999999997421 1125679999986 667889999999999999999 9999999
Q ss_pred EeCCCcEEEEEehhhHhhc
Q 019775 316 INRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 316 v~~~~~~iGiit~~di~~~ 334 (336)
+|++|+++|+||+.|+++.
T Consensus 200 VD~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 200 VDKNGNLVYLVFRKDYDSH 218 (502)
T ss_pred EcCCCeEEEEEEhHHHHhc
Confidence 9988999999999999875
No 50
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.60 E-value=1.6e-14 Score=110.07 Aligned_cols=111 Identities=26% Similarity=0.458 Sum_probs=96.9
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM 300 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 300 (336)
+..++++.++.++.+.+.+.+++.+||+|++++++|+++.+++...+..........++.++|.+++.++.+++++.+++
T Consensus 3 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 82 (113)
T cd04623 3 VITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDEAM 82 (113)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHHHH
Confidence 45789999999999999999999999999889999999999999877643322224578899988889999999999999
Q ss_pred HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
+.|.+. +...+||+++ |+++|+|+..|++++
T Consensus 83 ~~~~~~--~~~~~~Vv~~-~~~~Gvit~~di~~~ 113 (113)
T cd04623 83 ALMTER--RFRHLPVVDG-GKLVGIVSIGDVVKA 113 (113)
T ss_pred HHHHHc--CCCEeEEEeC-CEEEEEEEHHHhhcC
Confidence 999998 8899999988 999999999999864
No 51
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.60 E-value=1.3e-14 Score=112.71 Aligned_cols=112 Identities=24% Similarity=0.345 Sum_probs=97.2
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCc---------hhhhhHhhhcCCCCeeeC
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEG---------IFKLTVGEMCNRSPRTIG 291 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~---------~~~~~i~~~~~~~~~~v~ 291 (336)
+++++++.++.++.+.|.+.+++.+||++++|+++|+++..+|...+...... ....++.++|.+++.++.
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 83 (124)
T cd04600 4 VVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVVTVR 83 (124)
T ss_pred cEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCeeeC
Confidence 56889999999999999998999999999889999999999998765432210 123468899988999999
Q ss_pred CCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 292 PDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 292 ~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
+++++.++++.|.++ +...+||++++|+++|+|++.|++++
T Consensus 84 ~~~~l~~~~~~~~~~--~~~~~~Vv~~~g~~~Gvit~~di~~~ 124 (124)
T cd04600 84 PDTPIAELVPLLADG--GHHHVPVVDEDRRLVGIVTQTDLIAA 124 (124)
T ss_pred CCCcHHHHHHHHHhc--CCCceeEEcCCCCEEEEEEhHHhhcC
Confidence 999999999999998 89999999988999999999999864
No 52
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.60 E-value=2e-14 Score=110.05 Aligned_cols=111 Identities=26% Similarity=0.357 Sum_probs=96.6
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM 300 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 300 (336)
.++++++.++.++.+.|.+.++..+||+|++|+++|+++.+||+....... .....++.++|.+++.++.+++++.+++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~l~~~l 81 (115)
T cd04593 3 PPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADE-AGEPSAVDEVATPPLLTVHPDEPLAHAL 81 (115)
T ss_pred CcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhccc-ccccccHHHhccCCceEECCCCCHHHHH
Confidence 457899999999999999989999999998899999999999998765322 1123458888888899999999999999
Q ss_pred HHhcCCCCCccEeEEEeCC--CcEEEEEehhhHhhc
Q 019775 301 QKMESPPSPVQFLPVINRQ--NILIGIVTLHGLVSA 334 (336)
Q Consensus 301 ~~~~~~~~~~~~l~Vv~~~--~~~iGiit~~di~~~ 334 (336)
+.|.++ +...+||+|++ |+++|+||+.|++++
T Consensus 82 ~~~~~~--~~~~~~Vvd~~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 82 DRMASR--GLRQLPVVDRGNPGQVLGLLTRENVLLA 115 (115)
T ss_pred HHHHHc--CCceeeEEeCCCCCeEEEEEEhHHhhcC
Confidence 999999 89999999987 799999999999874
No 53
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.59 E-value=2e-14 Score=110.18 Aligned_cols=110 Identities=27% Similarity=0.397 Sum_probs=94.2
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchh----hhhHhhhcCCCCeeeCCCccH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIF----KLTVGEMCNRSPRTIGPDAMA 296 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~----~~~i~~~~~~~~~~v~~~~~l 296 (336)
++++++++++.++.+.|.+.+++.+||+|++|+++|+++.+++...+........ ..++.++|.+.+..+.+++++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l 82 (116)
T cd04643 3 VAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDADI 82 (116)
T ss_pred cEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCCCCH
Confidence 5688999999999999999999999999988999999999999987653221111 357889998889999999999
Q ss_pred HHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 297 VEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 297 ~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
.++++.|.+. + .+||++++|+++|+||+.|++++
T Consensus 83 ~~a~~~~~~~--~--~~~Vv~~~~~~~Gvit~~dil~~ 116 (116)
T cd04643 83 EEILHLLIDQ--P--FLPVVDDDGIFIGIITRREILKA 116 (116)
T ss_pred HHHHHHHhcC--C--ceeEEeCCCeEEEEEEHHHhhcC
Confidence 9999999876 4 58999988999999999999864
No 54
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.59 E-value=2e-14 Score=109.24 Aligned_cols=108 Identities=25% Similarity=0.345 Sum_probs=95.6
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM 300 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 300 (336)
+.++.++.+++++.+.+.+.+...+||++++|+++|+++..++...+..... ..++.++|..++..+.+++++.+++
T Consensus 3 ~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~---~~~v~~~~~~~~~~i~~~~~~~~~~ 79 (111)
T cd04639 3 FETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGGP---DAPVRGVMRRDFPTVSPSATLDAVL 79 (111)
T ss_pred ceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcCC---CCcHHHHhcCCCcEECCCCcHHHHH
Confidence 4578999999999999988888999999988999999999999987654221 3478888888889999999999999
Q ss_pred HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775 301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVS 333 (336)
Q Consensus 301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~ 333 (336)
+.|.++ +...+||++++|+++|++|+.|+.+
T Consensus 80 ~~~~~~--~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 80 RLMQQG--GAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred HHHHhc--CCceeeEEcCCCCEEEEEEHHHhhc
Confidence 999998 8899999998899999999999975
No 55
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.59 E-value=2.2e-14 Score=110.56 Aligned_cols=110 Identities=27% Similarity=0.417 Sum_probs=94.6
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCC--CCeeeCCCccHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNR--SPRTIGPDAMAVE 298 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~l~~ 298 (336)
+.+++++.++.++++.|..++...+||+|++++++|+++..++........ .....++.++|.+ .+.++.+++++.+
T Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~l~~ 81 (118)
T cd04617 3 PVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA-DLQKVPVGVIMTRMPNITTTTPEESVLE 81 (118)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC-CccCCCHHHHhCCCCCcEEECCCCcHHH
Confidence 457899999999999999889999999998899999999999998765322 1124567788864 6779999999999
Q ss_pred HHHHhcCCCCCccEeEEEeCC---CcEEEEEehhhHhh
Q 019775 299 AMQKMESPPSPVQFLPVINRQ---NILIGIVTLHGLVS 333 (336)
Q Consensus 299 ~~~~~~~~~~~~~~l~Vv~~~---~~~iGiit~~di~~ 333 (336)
+++.|.++ +.+.+||+|++ |+++|+||+.||++
T Consensus 82 ~~~~~~~~--~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 82 AAKKLIEH--QVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred HHHHHHHc--CCCEeeEEeCCCccceEEEEEEhhheec
Confidence 99999999 89999999986 69999999999875
No 56
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.58 E-value=6.1e-15 Score=124.96 Aligned_cols=155 Identities=22% Similarity=0.261 Sum_probs=126.3
Q ss_pred HHHHHHHHHhhcCCChHHHhhcCCCCchhh----hhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC
Q 019775 176 GDTVAIAMMGARNLTRDEYAANHPAGRIGK----SLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE 251 (336)
Q Consensus 176 ~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~ 251 (336)
+|.-+..+-+..+++++++...-++-++.. ....+..+||.++ ++++..++++.++..++.+|++..+||+|++
T Consensus 208 ld~aL~~~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSrd--Vvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~ 285 (382)
T COG3448 208 LDAALQRLGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSRD--VVTVSTDTSIDHARKLLQEHRIKALPVLDEH 285 (382)
T ss_pred HHHHHHhcCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCcc--ceecCCcCChHHHHHHHHHcCcccccccccc
Confidence 455556666777888888754433333222 2366889999998 6799999999999999999999999999999
Q ss_pred CcEEEEeeHHHHHHHHHhcC----CchhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEe
Q 019775 252 YHLIGTFTDGDLRRTLKASG----EGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVT 327 (336)
Q Consensus 252 ~~~~G~it~~dl~~~~~~~~----~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit 327 (336)
.+++|+|+.+||........ .......++.+|+++..++.++++..+.+-+|.+. +.+.+||+|++|+++||||
T Consensus 286 ~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~--g~H~lpvld~~g~lvGIvs 363 (382)
T COG3448 286 RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADE--GLHALPVLDAAGKLVGIVS 363 (382)
T ss_pred cceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCcceeecCCCcHHHHHHHhhcC--CcceeeEEcCCCcEEEEee
Confidence 99999999999998443211 11223578899998999999999999999999999 9999999999999999999
Q ss_pred hhhHhhc
Q 019775 328 LHGLVSA 334 (336)
Q Consensus 328 ~~di~~~ 334 (336)
..|++.+
T Consensus 364 QtDliaa 370 (382)
T COG3448 364 QTDLIAA 370 (382)
T ss_pred HHHHHHH
Confidence 9999864
No 57
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.58 E-value=3.9e-14 Score=138.05 Aligned_cols=126 Identities=17% Similarity=0.228 Sum_probs=108.5
Q ss_pred hhhhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhc
Q 019775 204 GKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMC 283 (336)
Q Consensus 204 ~~~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~ 283 (336)
.....++++|+|+++. ++++++++++++.+.+.+++.+.+||+|++++++|+++.+|+.+.+.... .....++.++|
T Consensus 442 ~~L~~~~V~dim~~~~--~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~-~~~~~~v~dim 518 (574)
T PRK01862 442 ERLRTTQMRELIQPAQ--TVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKR-DTTDKTAADYA 518 (574)
T ss_pred hHHhhCcHHHHhcCCC--ceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhccc-ccccchHHHhc
Confidence 3345789999999874 48999999999999999999999999999999999999999998654322 11235788999
Q ss_pred CCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCC--CcEEEEEehhhHhhc
Q 019775 284 NRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQ--NILIGIVTLHGLVSA 334 (336)
Q Consensus 284 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~--~~~iGiit~~di~~~ 334 (336)
.+++..+++++++.++++.|.++ +.+.+||+|++ ++++|+||++|++++
T Consensus 519 ~~~~~~v~~d~~L~~al~~m~~~--~~~~lpVVd~~~~~~liGvIt~~DIl~~ 569 (574)
T PRK01862 519 HTPFPLLTPDMPLGDALEHFMAF--QGERLPVVESEASPTLAGVVYKTSLLDA 569 (574)
T ss_pred cCCCeeECCCCCHHHHHHHHHhc--CCCeeeeEeCCCCCeEEEEEEHHHHHHH
Confidence 99899999999999999999999 89999999876 489999999999874
No 58
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.58 E-value=1.6e-14 Score=128.31 Aligned_cols=120 Identities=17% Similarity=0.279 Sum_probs=103.8
Q ss_pred hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC-CcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCC
Q 019775 209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE-YHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSP 287 (336)
Q Consensus 209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~-~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~ 287 (336)
.+|+++|.|...+++++.+.+++++.+.+.+++++.+||++++ ++++|+++.+|++........ ...+.++|.+ +
T Consensus 67 ~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~---~~~l~~l~r~-~ 142 (292)
T PRK15094 67 QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAE---AFSMDKVLRQ-A 142 (292)
T ss_pred CEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCC---cCCHHHHcCC-C
Confidence 3789999997667899999999999999999999999999866 689999999999975532111 2347788865 4
Q ss_pred eeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 288 RTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 288 ~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
.+++++.++.++++.|+++ +.+.+||+|+.|.++|+||+.||++.
T Consensus 143 ~~V~e~~~l~~~L~~m~~~--~~~~a~VvDe~G~viGiVTleDIle~ 187 (292)
T PRK15094 143 VVVPESKRVDRMLKEFRSQ--RYHMAIVIDEFGGVSGLVTIEDILEL 187 (292)
T ss_pred cCcCCCCcHHHHHHHHHhc--CCEEEEEEeCCCCEEEEeEHHHHHHH
Confidence 5899999999999999999 99999999999999999999999874
No 59
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.58 E-value=3.2e-14 Score=110.53 Aligned_cols=112 Identities=28% Similarity=0.335 Sum_probs=96.6
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCC-CcEEEEeeHHHHHHHHHhcCC----------chhhhhHhhhcCCCCee
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEE-YHLIGTFTDGDLRRTLKASGE----------GIFKLTVGEMCNRSPRT 289 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~-~~~~G~it~~dl~~~~~~~~~----------~~~~~~i~~~~~~~~~~ 289 (336)
+++++++.++.++++.|.+.+.+.+||+|++ |+++|+++..++...+..... .....++.+++.+++.+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
T cd04631 3 VVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNVIT 82 (125)
T ss_pred ceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCceE
Confidence 4578999999999999999999999999986 999999999999987653221 01235788888888999
Q ss_pred eCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 290 IGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 290 v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
+.+++++.++++.|.+. +...+||++++|+++|+||+.||+++
T Consensus 83 v~~~~~l~~~~~~~~~~--~~~~~~V~~~~~~~~Gvit~~di~~~ 125 (125)
T cd04631 83 ITPDDSIKDAAELMLEK--RVGGLPVVDDDGKLVGIVTERDLLKA 125 (125)
T ss_pred eCCCCcHHHHHHHHHHc--CCceEEEEcCCCcEEEEEEHHHhhcC
Confidence 99999999999999999 89999999987999999999999864
No 60
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.58 E-value=3.5e-14 Score=107.47 Aligned_cols=105 Identities=19% Similarity=0.333 Sum_probs=93.9
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM 300 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 300 (336)
++.++++.++.++.+.|.+.++..+||+|++|+++|+++..|+...... ..++.++|.+.+..+.+++++.+++
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~------~~~v~~~~~~~~~~v~~~~~~~~~~ 77 (109)
T cd04583 4 PVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYKE------AKSLEDIMLEDVFTVQPDASLRDVL 77 (109)
T ss_pred CEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhhc------CCcHhHhhcCCceEECCCCcHHHHH
Confidence 4578999999999999998899999999988999999999999875432 2467888888889999999999999
Q ss_pred HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775 301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVS 333 (336)
Q Consensus 301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~ 333 (336)
+.|.+. +...+||++++|+++|++|+.|+++
T Consensus 78 ~~~~~~--~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 78 GLVLKR--GPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred HHHHHc--CCceeeEECCCCeEEEEEehHHhhc
Confidence 999998 8899999998899999999999986
No 61
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.57 E-value=3.3e-14 Score=108.38 Aligned_cols=111 Identities=22% Similarity=0.352 Sum_probs=95.4
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM 300 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 300 (336)
++++.++.++.++.+.|.+++.+.+||+++ |+++|+++..++..............++.++|.+++..+.+++++.+++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04587 3 PATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLEAL 81 (113)
T ss_pred CeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHHHHH
Confidence 457899999999999999888899999997 9999999999998655443222212578899988889999999999999
Q ss_pred HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
+.|.++ +.+.+||++++|+++|+|+..|++.+
T Consensus 82 ~~~~~~--~~~~l~Vv~~~~~~~Gvvs~~dl~~~ 113 (113)
T cd04587 82 HLMVQG--KFRHLPVVDKSGQVVGLLDVTKLTHA 113 (113)
T ss_pred HHHHHc--CCCcccEECCCCCEEEEEEHHHhccC
Confidence 999998 88999999988999999999999864
No 62
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.57 E-value=4.9e-14 Score=106.95 Aligned_cols=106 Identities=26% Similarity=0.365 Sum_probs=94.3
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM 300 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 300 (336)
+++++++.++.++.+.|.+++++.+||+|++|+++|+++.++++..... . ..++.++|.+++..+.+++++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~-~----~~~~~~~~~~~~~~v~~~~~l~~~~ 78 (110)
T cd04605 4 VVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVAR-D----KKSVEDIMTRNVITATPDEPIDVAA 78 (110)
T ss_pred CEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhh-C----ccCHHHhcCCCCeEECCCCcHHHHH
Confidence 4578999999999999999899999999988999999999999876543 1 2358888888888999999999999
Q ss_pred HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775 301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVS 333 (336)
Q Consensus 301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~ 333 (336)
+.|.++ +...+||++++|+++|+|++.|+++
T Consensus 79 ~~~~~~--~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 79 RKMERH--NISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred HHHHHh--CCCEEeEECCCCcEEEEEEHHHhhh
Confidence 999998 8899999998899999999999975
No 63
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.57 E-value=4.9e-14 Score=107.57 Aligned_cols=110 Identities=39% Similarity=0.700 Sum_probs=96.7
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM 300 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 300 (336)
+++++++.++.++.+.+.+.+++.+||+|++|+++|+++..++...+.... .....++.++|.+.+..+.+++++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~-~~~~~~v~~~~~~~~~~v~~~~~~~~~~ 82 (114)
T cd04604 4 LPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGL-DILTLPVADVMTRNPKTIDPDALAAEAL 82 (114)
T ss_pred ccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccC-ccccCCHHHhhccCCeEECCCCcHHHHH
Confidence 568999999999999998888899999998899999999999998775422 1123478999988889999999999999
Q ss_pred HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775 301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVS 333 (336)
Q Consensus 301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~ 333 (336)
+.|.++ +...+||++++|+++|+|+..||++
T Consensus 83 ~~~~~~--~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 83 ELMEEN--KITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred HHHHHc--CCCEEEEECCCCCEEEEEEHHHhhc
Confidence 999988 8899999997799999999999986
No 64
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.57 E-value=3.1e-14 Score=108.89 Aligned_cols=108 Identities=19% Similarity=0.222 Sum_probs=92.2
Q ss_pred CccccCCCcHHHHHHHHHhcC-cceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCC--CCeeeCCCccHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKG-CGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNR--SPRTIGPDAMAV 297 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~-~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~l~ 297 (336)
+++++++.++.++.+.|.+.+ .+.+||+|++|+++|+++.+||........ ...++.++|.+ .+..+.+++++.
T Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~---~~~~v~~~~~~~~~~~~v~~~~~l~ 79 (114)
T cd04801 3 FPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQW---AQTTVIQVMTPAAKLVTVLSEESLA 79 (114)
T ss_pred cceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhhc---cccchhhhhcccccceEECCCCcHH
Confidence 568999999999999997664 889999998899999999999998664321 13567888864 256899999999
Q ss_pred HHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775 298 EAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS 333 (336)
Q Consensus 298 ~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~ 333 (336)
++++.|.++ +...+||++++|+++|+|++.||++
T Consensus 80 ~a~~~~~~~--~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 80 EVLKLLEEQ--GLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred HHHHHHHHC--CCCeeEEEcCCCcEEEEEeccceec
Confidence 999999999 8999999998899999999999875
No 65
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.57 E-value=3e-14 Score=107.87 Aligned_cols=105 Identities=20% Similarity=0.310 Sum_probs=94.1
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM 300 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 300 (336)
+.++++++++.++.+.|.+++.+.+||+|++|+++|+++..++.... ...++.++|.+.+.++.+++++.+++
T Consensus 4 ~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~-------~~~~v~~~~~~~~~~v~~~~~l~~~~ 76 (108)
T cd04596 4 TGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD-------PDTTIEKVMTKNPITVNPKTSVASVA 76 (108)
T ss_pred cEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc-------ccccHHHHhcCCCeEECCCCCHHHHH
Confidence 56889999999999999998889999999889999999999997531 14578889988889999999999999
Q ss_pred HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
+.|.++ +...+||++++|+++|+++..|++++
T Consensus 77 ~~~~~~--~~~~~~Vv~~~~~~~G~it~~di~~~ 108 (108)
T cd04596 77 HMMIWE--GIEMLPVVDDNKKLLGIISRQDVLKA 108 (108)
T ss_pred HHHHHc--CCCeeeEEcCCCCEEEEEEHHHhhcC
Confidence 999998 89999999988999999999999863
No 66
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.56 E-value=7.4e-14 Score=106.30 Aligned_cols=110 Identities=22% Similarity=0.360 Sum_probs=96.3
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM 300 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 300 (336)
+.+++++.+++++.+.|.+.+++.+||+|++++++|+++..+++..+.... ....++.++|.+++..+.+++++.+++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~--~~~~~v~~~~~~~~~~v~~~~~~~~~~ 80 (112)
T cd04624 3 VVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGI--DLDTPVSEIMTRDLVTVDPDEPVAEAA 80 (112)
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccC--CCccCHHHhccCCCEEECCCCcHHHHH
Confidence 457899999999999999889999999998899999999999988765422 124568888888889999999999999
Q ss_pred HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
+.|.++ +...+||++++|+++|++++.|+++.
T Consensus 81 ~~~~~~--~~~~~~Vv~~~g~~~Gilt~~dl~~~ 112 (112)
T cd04624 81 KLMRKN--NIRHHLVVDKGGELVGVISIRDLVRE 112 (112)
T ss_pred HHHHHc--CccEEEEEcCCCcEEEEEEHHHhccC
Confidence 999988 78899999988999999999999863
No 67
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.56 E-value=5.9e-14 Score=107.04 Aligned_cols=111 Identities=21% Similarity=0.321 Sum_probs=96.9
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM 300 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 300 (336)
+++++++.++.++.+.|.+.+++.+||+|++|+++|+++.++|.....+.. .....++.++|.+++.++.+++++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~v~~~~~~~~~~ 81 (114)
T cd04613 3 VVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPS-LYDLVVASDIMTKPPVVVYPEDSLEDAL 81 (114)
T ss_pred ceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhccc-ccccEEHHHhccCCCcEEcCCCCHHHHH
Confidence 458999999999999999989999999998899999999999987664321 1113678899999999999999999999
Q ss_pred HHhcCCCCCccEeEEEeC-CCcEEEEEehhhHhhc
Q 019775 301 QKMESPPSPVQFLPVINR-QNILIGIVTLHGLVSA 334 (336)
Q Consensus 301 ~~~~~~~~~~~~l~Vv~~-~~~~iGiit~~di~~~ 334 (336)
+.|.+. +...+||+++ .|+++|+++..|++++
T Consensus 82 ~~~~~~--~~~~~~Vv~~~~~~~~Gvvt~~di~~~ 114 (114)
T cd04613 82 KKFEDS--DYEQLPVVDDDPGKLLGILSRSDLLSA 114 (114)
T ss_pred HHHhhC--CccEeeEEeCCCCEEEEEEEhHHhhcC
Confidence 999998 8999999987 7999999999999863
No 68
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.56 E-value=5e-14 Score=107.42 Aligned_cols=109 Identities=23% Similarity=0.261 Sum_probs=94.7
Q ss_pred ccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHHH
Q 019775 222 PVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQ 301 (336)
Q Consensus 222 ~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~ 301 (336)
..+.+++++.++++.+.+.+.+.+||+|++++++|+++.+++........ .....++.++|.+++.++..++++.++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~-~~~~~~i~~~~~~~~~~v~~~~~l~~~~~ 82 (113)
T cd04615 4 SCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESE-ELKDAKVREVMNSPVITIDANDSIAKARW 82 (113)
T ss_pred EEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhh-hhcCCcHHHhccCCceEECCCCcHHHHHH
Confidence 36899999999999999999999999998899999999999987544321 11245788899888899999999999999
Q ss_pred HhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775 302 KMESPPSPVQFLPVINRQNILIGIVTLHGLVS 333 (336)
Q Consensus 302 ~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~ 333 (336)
.|.++ +...+||++++|+++|+++..|+++
T Consensus 83 ~~~~~--~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 83 LMSNN--NISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred HHHHc--CCCeeeEECCCCeEEEEEEHHHhhc
Confidence 99988 8889999998899999999999975
No 69
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.56 E-value=6.5e-14 Score=106.90 Aligned_cols=108 Identities=30% Similarity=0.476 Sum_probs=95.0
Q ss_pred ccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHHH
Q 019775 222 PVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQ 301 (336)
Q Consensus 222 ~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~ 301 (336)
.+++++.++.++.+.|.+.+...+||++++|+++|+++.+|+...+..... ...++.++|.+.+..+.+++++.++++
T Consensus 5 ~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~--~~~~v~~~~~~~~~~v~~~~~l~~~~~ 82 (113)
T cd04607 5 LLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLS--LDDPVSEVMNRNPITAKVGSSREEILA 82 (113)
T ss_pred eEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCCC--cCCCHHHhhcCCCEEEcCCCCHHHHHH
Confidence 468999999999999998888999999988999999999999876653221 135688999888889999999999999
Q ss_pred HhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775 302 KMESPPSPVQFLPVINRQNILIGIVTLHGLVS 333 (336)
Q Consensus 302 ~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~ 333 (336)
.|.+. +...+||++++|+++|+||+.|++.
T Consensus 83 ~~~~~--~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 83 LMRER--SIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred HHHHC--CCCEEEEECCCCCEEEEEEhHHhcc
Confidence 99999 8999999998899999999999975
No 70
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.56 E-value=5.4e-14 Score=108.78 Aligned_cols=111 Identities=25% Similarity=0.325 Sum_probs=96.5
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCc--------hhhhhHhhhcCCCCeeeCC
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEG--------IFKLTVGEMCNRSPRTIGP 292 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~--------~~~~~i~~~~~~~~~~v~~ 292 (336)
++++.++.++.++.+.|.+.+++.+||++++|+++|+++..+++..+...... ....++.+++..++.++.+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~ 82 (122)
T cd04803 3 VVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLTVTP 82 (122)
T ss_pred CEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeEeCC
Confidence 45789999999999999999999999999889999999999999866432110 1245788899888999999
Q ss_pred CccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775 293 DAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS 333 (336)
Q Consensus 293 ~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~ 333 (336)
++++.++++.|.+. +.+.+||++++|+++|+||..|+++
T Consensus 83 ~~~~~~~~~~~~~~--~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 83 DTPLREAAEIMVEN--KIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred CCcHHHHHHHHHHc--CCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 99999999999998 8889999998899999999999986
No 71
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.56 E-value=3.6e-14 Score=108.35 Aligned_cols=111 Identities=19% Similarity=0.214 Sum_probs=95.8
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcC-CchhhhhHhhhcCCCCeeeCCCccHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASG-EGIFKLTVGEMCNRSPRTIGPDAMAVEA 299 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~-~~~~~~~i~~~~~~~~~~v~~~~~l~~~ 299 (336)
+.++++++++.++.+.|.+.+.+.+||++++++++|+++..++...+.... ......++.++|.+++..+.+++++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~ 82 (114)
T cd04629 3 PVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIVDL 82 (114)
T ss_pred CeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcHHHH
Confidence 457899999999999998888889999998899999999999987664321 1112457889998888999999999999
Q ss_pred HHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 300 MQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 300 ~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
++.|.++ +...+||+++ |+++|+||++|++++
T Consensus 83 ~~~~~~~--~~~~~~Vv~~-~~~~Gvit~~di~~~ 114 (114)
T cd04629 83 AQLMLKA--KPKRYPVVDD-GKLVGQISRRDVLRA 114 (114)
T ss_pred HHHHHHh--CCCccCEEEC-CEEEEEEEHHHHhcC
Confidence 9999999 8889999998 999999999999864
No 72
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.56 E-value=5.8e-14 Score=110.95 Aligned_cols=111 Identities=19% Similarity=0.324 Sum_probs=96.1
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCch----------------------hhhh
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGI----------------------FKLT 278 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~----------------------~~~~ 278 (336)
+++++++.++.++++.|.+.+.+.+||+|++|+++|+++..++........... ...+
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (135)
T cd04621 3 IATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPLV 82 (135)
T ss_pred ceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhccccccccccccccc
Confidence 457899999999999999989999999998899999999999998764321110 1347
Q ss_pred HhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 279 VGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 279 i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
+.++|.+++..+.+++++.++++.|.++ +...+||+++ |+++|+|+..|+++.
T Consensus 83 v~~~~~~~~~~v~~~~~l~~~~~~~~~~--~~~~l~Vv~~-~~~~Gvit~~di~~~ 135 (135)
T cd04621 83 AEDIMTEEIITVSPNDDVVDAAKLMLEA--NISGLPVVDN-DNIVGVITKTDICRE 135 (135)
T ss_pred HHHhcCCCCeEECCCCCHHHHHHHHHHc--CCCEEEEEeC-CEEEEEEEHHHHhhC
Confidence 8899988889999999999999999998 8999999998 999999999999863
No 73
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.56 E-value=3.6e-14 Score=105.18 Aligned_cols=94 Identities=24% Similarity=0.325 Sum_probs=85.5
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM 300 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 300 (336)
+++++++.++.++++.|.+.+.+.+||+|++|+++|+++.+|+.... .+.++.+++++.+++
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~------------------~~~~v~~~~~l~~a~ 64 (96)
T cd04614 3 VPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS------------------EVVTATKRTTVSECA 64 (96)
T ss_pred ccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC------------------CcEEecCCCCHHHHH
Confidence 56889999999999999988999999999889999999999998621 167899999999999
Q ss_pred HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
+.|.++ +.+.+||++++|+++|+||++|++++
T Consensus 65 ~~m~~~--~~~~lpVv~~~~~~~Giit~~di~~~ 96 (96)
T cd04614 65 QKMKRN--RIEQIPIINGNDKLIGLLRDHDLLKP 96 (96)
T ss_pred HHHHHh--CCCeeeEECCCCcEEEEEEHHHhhcC
Confidence 999999 99999999988999999999999874
No 74
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.56 E-value=8e-14 Score=105.94 Aligned_cols=107 Identities=20% Similarity=0.296 Sum_probs=92.8
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCC-CcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEE-YHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEA 299 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~-~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~ 299 (336)
+.+++++.+++++.+.|.+.+++.+||++++ |+++|+++..++......... ..++.+++ +++.++.+++++.++
T Consensus 3 ~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~---~~~~~~~~-~~~~~v~~~~~l~~~ 78 (111)
T cd04590 3 IVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEE---DLDLRDLL-RPPLFVPESTPLDDL 78 (111)
T ss_pred eEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCC---cCCHHHHh-cCCeecCCCCcHHHH
Confidence 4578999999999999998889999999987 999999999999987654221 14566666 457789999999999
Q ss_pred HHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775 300 MQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS 333 (336)
Q Consensus 300 ~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~ 333 (336)
++.|.++ +.+.+||++++|+++|+||+.|+++
T Consensus 79 ~~~~~~~--~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 79 LEEMRKE--RSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred HHHHHhc--CCcEEEEEECCCCEEEEeEHHHhhc
Confidence 9999999 8999999999899999999999986
No 75
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=7.1e-14 Score=108.45 Aligned_cols=110 Identities=18% Similarity=0.196 Sum_probs=91.1
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCC-CcEEEEeeHHHHHHHHHhcCCc----hh----hhhHhhhcCCCCeeeC
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEE-YHLIGTFTDGDLRRTLKASGEG----IF----KLTVGEMCNRSPRTIG 291 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~-~~~~G~it~~dl~~~~~~~~~~----~~----~~~i~~~~~~~~~~v~ 291 (336)
+.+++++.++.++.+.|.+.++..+||+|++ |+++|+++..|++..+...... .. .....+++.+++.++.
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 82 (123)
T cd04627 3 FIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVISIN 82 (123)
T ss_pred ceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceEeC
Confidence 5678999999999999998889999999987 8999999999998865432110 00 0112245677788999
Q ss_pred CCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHh
Q 019775 292 PDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLV 332 (336)
Q Consensus 292 ~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~ 332 (336)
+++++.++++.|.++ +...+||+|++|+++|+||++|+-
T Consensus 83 ~~~~l~~a~~~m~~~--~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 83 GDQPLIDALHLMHNE--GISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred CCCCHHHHHHHHHHc--CCceEEEECCCCcEEEEEeHHHhh
Confidence 999999999999999 899999999889999999999974
No 76
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.55 E-value=3.9e-14 Score=110.24 Aligned_cols=113 Identities=19% Similarity=0.132 Sum_probs=94.9
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM 300 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 300 (336)
++++.++.++.++++.|.+++...+||+|++|+++|+++.++++..+..... ....++.++|.+++..+.+++++.++.
T Consensus 4 ~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~-~~~~~v~~im~~~~~~v~~~~~~~~v~ 82 (124)
T cd04608 4 PVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKV-QPSDPVSKALYKQFKRVNKNDTLGKLS 82 (124)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhcc-CCCCcHHHHhhccceecCCCCCHHHHH
Confidence 4588999999999999999999999999988999999999999987654322 235789999999999999999999999
Q ss_pred HHhcCC-------CCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 301 QKMESP-------PSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 301 ~~~~~~-------~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
+.+..+ ..+...+||++++|+++|+||..|++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 83 RILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred hhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence 965432 0045677888888999999999999875
No 77
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.55 E-value=9e-14 Score=105.52 Aligned_cols=107 Identities=21% Similarity=0.274 Sum_probs=94.7
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM 300 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 300 (336)
+++++.+.++.++.+.|.+.+++.+||+|+ |+++|+++..++........ ...++.++|.+++.++.+++++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~l~~~~ 79 (110)
T cd04595 4 VKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHGL---GHAPVKDYMSTDVVTVPPDTPLSEVQ 79 (110)
T ss_pred ceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhccc---ccCcHHHHhcCCCEEECCCCcHHHHH
Confidence 458899999999999999888899999997 99999999999987654321 25678899989999999999999999
Q ss_pred HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
+.|.++ +.+.+||++ +|+++|+||+.|++++
T Consensus 80 ~~~~~~--~~~~~~V~~-~~~~~Gvvt~~di~~~ 110 (110)
T cd04595 80 ELMVEH--DIGRVPVVE-DGRLVGIVTRTDLLRT 110 (110)
T ss_pred HHHHHc--CCCeeEEEe-CCEEEEEEEhHHhhcC
Confidence 999999 899999999 5999999999999863
No 78
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.55 E-value=9.5e-14 Score=105.84 Aligned_cols=111 Identities=29% Similarity=0.361 Sum_probs=94.2
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM 300 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 300 (336)
+++++++.++.++.+.|.+.+++.+||+++ |+++|+++..++..............++.++|.+.+..+.+++++.+++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 81 (113)
T cd04622 3 VVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDEAA 81 (113)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHHHHH
Confidence 567899999999999999989999999997 9999999999987443322222222348899988899999999999999
Q ss_pred HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
+.|.+. +...+||++++|+++|+|++.|++++
T Consensus 82 ~~~~~~--~~~~~~V~~~~~~~~G~it~~di~~~ 113 (113)
T cd04622 82 RLMREH--QVRRLPVVDDDGRLVGIVSLGDLARA 113 (113)
T ss_pred HHHHHc--CCCeeeEECCCCcEEEEEEHHHhhcC
Confidence 999988 88999999887999999999999864
No 79
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=1.2e-13 Score=105.11 Aligned_cols=110 Identities=22% Similarity=0.452 Sum_probs=92.8
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM 300 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 300 (336)
+++++++.++.++.+.|.+++...++|.+ +|+++|+++.+++..............++.++|.+.+..+.+++++.+++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~ 81 (112)
T cd04625 3 IYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEVR 81 (112)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHHHHH
Confidence 56789999999999999887877777776 58999999999999876542211124578899988888999999999999
Q ss_pred HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
+.|.++ +...+||+++ |+++|+||++|++++
T Consensus 82 ~~m~~~--~~~~l~Vv~~-~~~~Gvvt~~dl~~~ 112 (112)
T cd04625 82 RLMVER--HLRYLPVLDG-GTLLGVISFHDVAKA 112 (112)
T ss_pred HHHHHc--CCCeeeEEEC-CEEEEEEEHHHhhcC
Confidence 999998 8999999986 999999999999863
No 80
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=8.5e-14 Score=105.85 Aligned_cols=108 Identities=22% Similarity=0.284 Sum_probs=94.6
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM 300 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 300 (336)
+++++++.++.++++.+.+.+++.+||+|++|+++|+++.+++........ ....++.++|.+++.++.+++++.+++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~--~~~~~v~~~~~~~~~~v~~~~~l~~~~ 80 (111)
T cd04626 3 FPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFES--FLEKKVFNIVSQDVFYVNEEDTIDEAL 80 (111)
T ss_pred ceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhcc--cccCcHHHHhcCCcEEEcCCCcHHHHH
Confidence 568899999999999999989999999998899999999999987544211 113468888888889999999999999
Q ss_pred HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775 301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVS 333 (336)
Q Consensus 301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~ 333 (336)
+.|.++ +...+||+++ |+++|+||..|+++
T Consensus 81 ~~~~~~--~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 81 DIMREK--QIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred HHHHHc--CCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 999999 8999999998 99999999999975
No 81
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.54 E-value=1.1e-13 Score=105.09 Aligned_cols=108 Identities=19% Similarity=0.369 Sum_probs=95.3
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM 300 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 300 (336)
+++++++.++.++.+.|.+.+...+||+++ ++++|+++.++|......... ...++.++|.+++..+.+++++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~l~~~l 79 (111)
T cd04611 3 ILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGPD--LQTPVGEVMSSPLLTVPADTSLYDAR 79 (111)
T ss_pred ceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCCC--CCcCHHHhcCCCceEECCCCCHHHHH
Confidence 458899999999999999888899999986 899999999999987654221 24678899988889999999999999
Q ss_pred HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775 301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVS 333 (336)
Q Consensus 301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~ 333 (336)
+.|.+. +...+||++++|+++|+|++.|+++
T Consensus 80 ~~~~~~--~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 80 QLMREH--GIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred HHHHHc--CCeEEEEECCCCcEEEEEEhHHhhc
Confidence 999988 8889999998899999999999986
No 82
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.54 E-value=4.9e-14 Score=109.90 Aligned_cols=111 Identities=21% Similarity=0.311 Sum_probs=92.0
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhh------------hhHhhhcCCCCe
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFK------------LTVGEMCNRSPR 288 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~------------~~i~~~~~~~~~ 288 (336)
+++++++.++.++++.|.+++++.+||+|++|+++|+++..|++............ ....+.+.+++.
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (126)
T cd04642 3 VVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSRPLI 82 (126)
T ss_pred eEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccCCCe
Confidence 45789999999999999988999999999889999999999999866432210000 112245667788
Q ss_pred eeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775 289 TIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS 333 (336)
Q Consensus 289 ~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~ 333 (336)
.+.+++++.++++.|.++ +...+||++++|+++|+||+.||++
T Consensus 83 ~v~~~~~l~~a~~~~~~~--~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 83 TCTPSSTLKEVITKLVAN--KVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred EECCCCcHHHHHHHHHHh--CCcEEEEECCCCCEEEEEEHHHHhc
Confidence 999999999999999998 8999999998899999999999985
No 83
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.54 E-value=1.4e-13 Score=103.74 Aligned_cols=103 Identities=17% Similarity=0.224 Sum_probs=91.5
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM 300 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 300 (336)
+++++++.++.++.+.|.+.+...+||+|++|+++|+++..|++.... .++.++|.+.+..+.+++++.+++
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 74 (106)
T cd04582 3 PITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASG--------GCCGDHAEPFKVTVSVDDDLRIVL 74 (106)
T ss_pred CcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcc--------cchhhhcccCCEEECCCCCHHHHH
Confidence 458899999999999999888899999998899999999999986421 246778877778899999999999
Q ss_pred HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775 301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVS 333 (336)
Q Consensus 301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~ 333 (336)
+.|.++ +...+||++++|+++|+|+++++++
T Consensus 75 ~~~~~~--~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 75 SRMFAH--DMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred HHHHHC--CCCeeeEECCCCcEEEEEEHHHhhc
Confidence 999999 8999999998899999999999976
No 84
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=99.54 E-value=2e-13 Score=124.41 Aligned_cols=142 Identities=19% Similarity=0.196 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHH-HhcCCeeeecCCccccccccCCCCCC
Q 019775 24 FKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTL-ISLGIKSGFLNPLDALHGDIGILSSD 102 (336)
Q Consensus 24 ~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l-~~~g~~~~~~~~~~~~~~~~~~~~~~ 102 (336)
+....+.++...+.-.+..+. .++.++ ++|+++|.|.|...|+++.+.+ ...++++....+... ....+++
T Consensus 8 ~~~~~~q~~~a~~~~~~~~~~---~~~~~~-~~I~i~G~GgS~~~a~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~ 79 (337)
T PRK08674 8 YLNWPEQFEEALEIAISLDLE---EDLEKI-DNIVISGMGGSGIGGDLLRILLFDELKVPVFVNRDYTL----PAFVDEK 79 (337)
T ss_pred HHhHHHHHHHHHHhhhccchh---hhhcCC-CEEEEEECcHHHHHHHHHHHHHHhcCCCcEEEeCccch----hhcCCCC
Confidence 333444444444333322233 344578 6999999999999999999887 457888888765432 2345899
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCE----EEEcCCCcccCCCCCCChhHHHHHHHHHHH
Q 019775 103 DILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDM----NVHLPVERELCPFDLAPVTSTAIQMVFGDT 178 (336)
Q Consensus 103 dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~----~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~ 178 (336)
|++|++|.||+|++++++++.|+++|+++|+||+ +++++++||. ++.+|.+. .++.+..++++.
T Consensus 80 dlvI~iS~SG~T~e~~~a~~~a~~~ga~vIaIT~--~~~L~~~a~~~~~~~i~ip~~~----------~~r~s~~~ll~~ 147 (337)
T PRK08674 80 TLVIAVSYSGNTEETLSAVEQALKRGAKIIAITS--GGKLKEMAKEHGLPVIIVPGGY----------QPRAALGYLFTP 147 (337)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCeEEEECC--CchHHHHHHhcCCeEEEeCCCC----------cchhhHHHHHHH
Confidence 9999999999999999999999999999999997 4689999887 78887542 245666777777
Q ss_pred HHHHHHh
Q 019775 179 VAIAMMG 185 (336)
Q Consensus 179 l~~~~~~ 185 (336)
++..+..
T Consensus 148 l~~~l~~ 154 (337)
T PRK08674 148 LLKILEK 154 (337)
T ss_pred HHHHHHH
Confidence 7665543
No 85
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.54 E-value=6.9e-14 Score=110.42 Aligned_cols=111 Identities=23% Similarity=0.342 Sum_probs=95.3
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCC---------------------chhhhhH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGE---------------------GIFKLTV 279 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~---------------------~~~~~~i 279 (336)
+++++++.++.++.+.|.++++..+||+|++++++|+++..++......... .....++
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 83 (135)
T cd04586 4 VVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGRKV 83 (135)
T ss_pred CEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCCCH
Confidence 5688999999999999999999999999988999999999999875432100 0113568
Q ss_pred hhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 280 GEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 280 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
.++|.+++..+.+++++.++++.|.+. +...+||+| +|+++|+||+.|++++
T Consensus 84 ~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~l~Vvd-~g~~~Gvit~~di~~~ 135 (135)
T cd04586 84 ADVMTRPVVTVGEDTPLAEVAELMEEH--RIKRVPVVR-GGRLVGIVSRADLLRA 135 (135)
T ss_pred HHHhCCCceEeCCCCcHHHHHHHHHHc--CCCccCEec-CCEEEEEEEhHhhhcC
Confidence 889988899999999999999999999 899999999 6999999999999864
No 86
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.54 E-value=1.6e-13 Score=104.14 Aligned_cols=107 Identities=19% Similarity=0.213 Sum_probs=94.0
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM 300 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 300 (336)
+.+++++.++.++.+.|.+.+++.+||+++ ++++|+++.+++......... ..++.+++.+++.++.++.++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~~---~~~v~~~~~~~~~~v~~~~~~~~~~ 78 (110)
T cd04588 3 LITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGLE---LAKVKDVMTKDVITIDEDEQLYDAI 78 (110)
T ss_pred cEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhcccc---ccCHHHHhcCCceEECCCCCHHHHH
Confidence 457899999999999999989999999997 999999999999986543211 2568888888889999999999999
Q ss_pred HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775 301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVS 333 (336)
Q Consensus 301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~ 333 (336)
+.|.+. +...+||++++|+++|+|++.|+++
T Consensus 79 ~~~~~~--~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 79 RLMNKH--NVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred HHHHhc--CCCEEEEECCCCCEEEEEEhHHhhc
Confidence 999988 8899999998899999999999975
No 87
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53 E-value=1.3e-13 Score=107.67 Aligned_cols=112 Identities=21% Similarity=0.278 Sum_probs=94.4
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcC------------CchhhhhHhhhcCCCCe
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASG------------EGIFKLTVGEMCNRSPR 288 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~------------~~~~~~~i~~~~~~~~~ 288 (336)
+.++.+++++.++.+.|.+.+.+.+||+|++|+++|+++.+++...+.... ......++.++|.+++.
T Consensus 3 ~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (128)
T cd04632 3 VITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSPVI 82 (128)
T ss_pred ceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCCCc
Confidence 457899999999999999999999999998899999999999987643210 00113468889988889
Q ss_pred eeCCCccHHHHHHHhcCCCCCccEeEEEe--CCCcEEEEEehhhHhhc
Q 019775 289 TIGPDAMAVEAMQKMESPPSPVQFLPVIN--RQNILIGIVTLHGLVSA 334 (336)
Q Consensus 289 ~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~--~~~~~iGiit~~di~~~ 334 (336)
++.++.++.++++.|.+. +...+||++ ++|+++|+||++|++++
T Consensus 83 ~v~~~~~l~~~l~~~~~~--~~~~~~V~~~~~~~~~~Gvit~~di~~~ 128 (128)
T cd04632 83 TASPNDSVRDAVDRMLEN--DDSSVVVVTPDDDTKVVGILTKKDVLRA 128 (128)
T ss_pred eECCCCcHHHHHHHHHhC--CCCeEeEeccCCCCcEEEEEEhHhhhcC
Confidence 999999999999999998 788999984 46899999999999864
No 88
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.53 E-value=6.6e-14 Score=131.64 Aligned_cols=116 Identities=23% Similarity=0.329 Sum_probs=104.3
Q ss_pred hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCC
Q 019775 208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSP 287 (336)
Q Consensus 208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~ 287 (336)
.++++++|.+++ ++++++.+++++.+.|.+++++.+||+|++++++|+|+.+|+... . ...++.++|.+++
T Consensus 88 ~VKv~~iMi~~p--vtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~----~---~~~~V~diMt~~~ 158 (479)
T PRK07807 88 WVKSRDLVFDTP--VTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV----D---RFTQVRDVMSTDL 158 (479)
T ss_pred hcccccccccCC--eEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC----c---cCCCHHHhccCCc
Confidence 567789998874 499999999999999999999999999988999999999998532 1 1356999999999
Q ss_pred eeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 288 RTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 288 ~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
.++++++++.++++.|.++ +.+.+||+|++|+++|+||++||++.
T Consensus 159 itV~~d~sL~eAl~lM~~~--~i~~LPVVD~~g~lvGIIT~~DIl~~ 203 (479)
T PRK07807 159 VTLPAGTDPREAFDLLEAA--RVKLAPVVDADGRLVGVLTRTGALRA 203 (479)
T ss_pred eEECCCCcHHHHHHHHHhc--CCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence 9999999999999999999 99999999988999999999999874
No 89
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.53 E-value=3e-14 Score=123.58 Aligned_cols=118 Identities=23% Similarity=0.394 Sum_probs=108.7
Q ss_pred hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCC
Q 019775 208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSP 287 (336)
Q Consensus 208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~ 287 (336)
...|+|+|.|.....++.+++++.+-.++..+.+++++||+|+..+++|+|+.+|+..... ..++..+|.++|
T Consensus 187 I~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~~-------~t~ieKVMtknp 259 (432)
T COG4109 187 IITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKKP-------STTIEKVMTKNP 259 (432)
T ss_pred eeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCCC-------CccHHHHhccCC
Confidence 4589999998776778999999999999999999999999999999999999999886432 578999999999
Q ss_pred eeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 288 RTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 288 ~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
.++.+.+++..+.++|.=. +.+-+||++++.+++|+||++|+++.
T Consensus 260 ~tv~~~tsVAsvaq~MiwE--~iem~PVv~~n~~llGiitR~dvlk~ 304 (432)
T COG4109 260 ITVRAKTSVASVAQMMIWE--GIEMLPVVDSNNTLLGIITRQDVLKS 304 (432)
T ss_pred eeecccchHHHHHHHHHhc--cceeeeEEcCCceEEEEEEHHHHHHH
Confidence 9999999999999999888 89999999999999999999999874
No 90
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53 E-value=1.3e-13 Score=108.30 Aligned_cols=111 Identities=21% Similarity=0.344 Sum_probs=95.2
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchh-------------------hhhHhh
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIF-------------------KLTVGE 281 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~-------------------~~~i~~ 281 (336)
+++++++.++.++.+.+.+.+++.+||+|++|+++|+++..+|...+........ ..++.+
T Consensus 3 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 82 (132)
T cd04636 3 VITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKVEE 82 (132)
T ss_pred CeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCHHH
Confidence 4578999999999999998889999999988999999999999987654221000 127888
Q ss_pred hcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 282 MCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 282 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
+|.+++..+.+++++.++++.|.+. +...+||+++ |+++|++|+.|+++.
T Consensus 83 ~~~~~~~~v~~~~~l~~~~~~~~~~--~~~~~~V~~~-~~~iGvit~~dl~~~ 132 (132)
T cd04636 83 IMTKKVITVDEDTTIEDVARIMSKK--NIKRLPVVDD-GKLVGIISRGDIIRS 132 (132)
T ss_pred hccCCceEECCCCcHHHHHHHHHHC--CCCeeEEEEC-CEEEEEEEHHHhhcC
Confidence 8888889999999999999999988 8899999999 999999999999863
No 91
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.52 E-value=2e-13 Score=103.76 Aligned_cols=108 Identities=31% Similarity=0.448 Sum_probs=94.3
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM 300 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 300 (336)
+++++++.+++++.+.|.+.+++.+||+|+ ++++|+++..++...+..... ....++.++|..++..+.+++++.+++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~v~~~~~l~~~~ 80 (111)
T cd04800 3 PVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGL-DPDTPVSEVMTAPPITIPPDATVFEAL 80 (111)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccCC-CccCCHHHHhCCCCeEECCCCcHHHHH
Confidence 457899999999999999888899999996 999999999999876544221 123568889988899999999999999
Q ss_pred HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775 301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVS 333 (336)
Q Consensus 301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~ 333 (336)
+.|.+. +...+||+++ |+++|++++.|+++
T Consensus 81 ~~~~~~--~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 81 LLMLER--GIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred HHHHHc--CCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 999999 8999999998 99999999999985
No 92
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.52 E-value=8.2e-14 Score=129.57 Aligned_cols=119 Identities=13% Similarity=0.206 Sum_probs=104.5
Q ss_pred hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC-CcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCC
Q 019775 208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE-YHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRS 286 (336)
Q Consensus 208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~-~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~ 286 (336)
.++|+++|.|...+.+++.+++++++.+.+.+++++++||++++ ++++|+++.+|++..... . ..++.+++. +
T Consensus 190 ~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~-~----~~~l~~~~~-~ 263 (408)
T TIGR03520 190 NTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK-K----NFDWQSLLR-E 263 (408)
T ss_pred CCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc-C----CCCHHHHcC-C
Confidence 45889999997778899999999999999999999999999854 589999999999865432 1 235677775 5
Q ss_pred CeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 287 PRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 287 ~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
+.+|++++++.++++.|+++ +.+..+|+|+.|...|+||..||++.
T Consensus 264 ~~~Vpe~~~l~~ll~~m~~~--~~~~aiVvDE~G~~~GiVT~eDilee 309 (408)
T TIGR03520 264 PYFVPENKKLDDLLRDFQEK--KNHLAIVVDEYGGTSGLVTLEDIIEE 309 (408)
T ss_pred CeEeCCCCcHHHHHHHHHhc--CceEEEEEcCCCCEEEEEEHHHHHHH
Confidence 78999999999999999999 89999999999999999999999874
No 93
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=99.52 E-value=6.2e-14 Score=101.87 Aligned_cols=79 Identities=34% Similarity=0.534 Sum_probs=73.3
Q ss_pred EEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccc-cCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEE
Q 019775 57 IFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGD-IGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSV 134 (336)
Q Consensus 57 I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~-~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~I 134 (336)
||++|.|.|+.+|+++.++|.+. |+++....+....... ...++++|++|++|++|+++++.++++.+|++|+++|+|
T Consensus 1 i~i~g~G~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~i 80 (87)
T cd04795 1 IFVIGIGGSGAIAAYFALELLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGRTEELLAALEIAKELGIPVIAI 80 (87)
T ss_pred CEEEEcCHHHHHHHHHHHHHhcccCCceEEeCCcHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEEE
Confidence 68999999999999999999999 9999988876665555 677899999999999999999999999999999999999
Q ss_pred e
Q 019775 135 T 135 (336)
Q Consensus 135 T 135 (336)
|
T Consensus 81 t 81 (87)
T cd04795 81 T 81 (87)
T ss_pred e
Confidence 9
No 94
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.52 E-value=1.3e-13 Score=106.70 Aligned_cols=112 Identities=24% Similarity=0.321 Sum_probs=95.2
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcC---Cc-----hhhhhHhhhcCCCCeeeCC
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASG---EG-----IFKLTVGEMCNRSPRTIGP 292 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~---~~-----~~~~~i~~~~~~~~~~v~~ 292 (336)
+++++++.++.++.+.|.+.+++.+||+|++|+++|+++..+++....... .. ....++.++|.+++..+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 82 (122)
T cd04635 3 PVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSVTP 82 (122)
T ss_pred CEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCeeECC
Confidence 457899999999999999889999999998899999999999986431110 00 1235678888888899999
Q ss_pred CccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 293 DAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 293 ~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
++++.++++.|.++ +...+||++++|+++|++|+.|++++
T Consensus 83 ~~~l~~~~~~~~~~--~~~~~~Vvd~~g~~~Gvit~~dl~~~ 122 (122)
T cd04635 83 DDSIATAVELMLEH--DIGRLPVVNEKDQLVGIVDRHDVLKA 122 (122)
T ss_pred CCCHHHHHHHHHHc--CCCeeeEEcCCCcEEEEEEhHHhhcC
Confidence 99999999999998 89999999988999999999999864
No 95
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.52 E-value=1.6e-13 Score=107.05 Aligned_cols=111 Identities=21% Similarity=0.275 Sum_probs=90.2
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHH-----HHhcCCchhhhhHhhhcCCCCeee-----
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRT-----LKASGEGIFKLTVGEMCNRSPRTI----- 290 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~-----~~~~~~~~~~~~i~~~~~~~~~~v----- 290 (336)
++++++++++.++++.|.+++...+||+|++|+++|+++..|++.. ...........++.++|.+++..+
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~~ 82 (126)
T cd04640 3 PIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDLE 82 (126)
T ss_pred CeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccHH
Confidence 3578999999999999998898999999988999999999999862 222101112456889997655333
Q ss_pred -CCCccHHHHHHHhcCCCCCccEeEEEeCC-CcEEEEEehhhHhh
Q 019775 291 -GPDAMAVEAMQKMESPPSPVQFLPVINRQ-NILIGIVTLHGLVS 333 (336)
Q Consensus 291 -~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~-~~~iGiit~~di~~ 333 (336)
.+++++.++++.|.++ +.+.+||+|++ |+++|+||+.||++
T Consensus 83 ~~~~~~l~~~l~~m~~~--~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 83 ELENASVGDVVETLKAS--GRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred HhccCcHHHHHHHHHHC--CCceEEEEECCCCEEEEEEeHHHHhh
Confidence 3688999999999999 89999999986 79999999999975
No 96
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.52 E-value=2.1e-13 Score=104.38 Aligned_cols=110 Identities=23% Similarity=0.420 Sum_probs=91.6
Q ss_pred CccccCCCcHHHHHHHHHhcC-cceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCC--ccHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKG-CGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPD--AMAV 297 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~-~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~--~~l~ 297 (336)
.++++++.++.++.+.|.+.+ ...+||++ +|+++|+++..|+........ .....++.++|.+++..+.++ +++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~-~~~~~~i~~~~~~~~~~v~~~~~~~l~ 80 (115)
T cd04620 3 PLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGK-DLSDLPIGEVMTQPVVTLQESEIQDIF 80 (115)
T ss_pred CeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCC-CccccCHHHhcCCCcEEEecccccCHH
Confidence 347899999999999998877 66778877 589999999999997654321 112357888888888888877 6899
Q ss_pred HHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 298 EAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 298 ~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
++++.|.++ +...+||+|++|+++|+||++|++++
T Consensus 81 ~a~~~~~~~--~~~~~pVvd~~~~~~Gvit~~dl~~~ 115 (115)
T cd04620 81 TALSLFRQH--QIRHLPVLDDQGQLIGLVTAESIRQV 115 (115)
T ss_pred HHHHHHHHh--CCceEEEEcCCCCEEEEEEhHHhhcC
Confidence 999999999 89999999988999999999999874
No 97
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.51 E-value=1.9e-13 Score=105.50 Aligned_cols=111 Identities=29% Similarity=0.397 Sum_probs=95.5
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCc---------hhhhhHhhhcCCCCeeeC
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEG---------IFKLTVGEMCNRSPRTIG 291 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~---------~~~~~i~~~~~~~~~~v~ 291 (336)
+++++++.++.++.+.|.+.++..+||+|+ |+++|+++..++.......... ....++.++|.+++.++.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (122)
T cd04585 3 PITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPITVS 81 (122)
T ss_pred CEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCeEeC
Confidence 457899999999999999989999999997 8999999999999876432110 013568888888899999
Q ss_pred CCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 292 PDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 292 ~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
+++++.++++.|.+. +...+||++++|+++|+||+.|+++.
T Consensus 82 ~~~~l~~~~~~~~~~--~~~~~~Vv~~~~~~~Gvvt~~di~~~ 122 (122)
T cd04585 82 PDASVEEAAELMLER--KISGLPVVDDQGRLVGIITESDLFRA 122 (122)
T ss_pred CCCcHHHHHHHHHHc--CCCceeEECCCCcEEEEEEHHHhhhC
Confidence 999999999999998 89999999988999999999999863
No 98
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.51 E-value=2.8e-13 Score=102.81 Aligned_cols=108 Identities=25% Similarity=0.375 Sum_probs=93.8
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM 300 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 300 (336)
++.++++.++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+......... ...++.++|.+++..+.+++++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (111)
T cd04612 3 VVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGRE--ATVLVGDVMTRDPVTASPDETLRDAL 79 (111)
T ss_pred CEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCcc--cccCHHHhccCCCeEECCCCCHHHHH
Confidence 457899999999999999888899999997 999999999999876543211 11357788888899999999999999
Q ss_pred HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775 301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVS 333 (336)
Q Consensus 301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~ 333 (336)
+.|.++ +.+.+||++++|+++|+|+..|+++
T Consensus 80 ~~~~~~--~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 80 KRMAER--DIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred HHHHhC--CCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 999998 8899999988899999999999976
No 99
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.51 E-value=2.8e-13 Score=102.94 Aligned_cols=109 Identities=22% Similarity=0.245 Sum_probs=94.2
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM 300 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 300 (336)
.+.++++.+++++.+.|.+.+...+||+|+ |+++|+++.++++....... .....++.++|.+++..+++++++.+++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 80 (111)
T cd04589 3 PLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDG-LPSSTPVGEIATFPLITVDPDDFLFNAL 80 (111)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCC-CCCCCCHHHHhCCCcEEECCCCcHHHHH
Confidence 347899999999999999888899999997 89999999999997664322 1124578889988889999999999999
Q ss_pred HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
+.|.++ +...+||+++ |+++|+||..|++++
T Consensus 81 ~~~~~~--~~~~~~Vv~~-~~~~G~it~~dl~~~ 111 (111)
T cd04589 81 LLMTRH--RIHRVVVREG-GEVVGVLEQTDLLSF 111 (111)
T ss_pred HHHHHh--CccEEEEeeC-CEEEEEEEhHHhhcC
Confidence 999999 8999999987 999999999999863
No 100
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=99.51 E-value=1.8e-13 Score=108.23 Aligned_cols=98 Identities=21% Similarity=0.277 Sum_probs=69.4
Q ss_pred ChhHHHHHHHHHHcC---CCeEEEEeccchHHHHHHHHHHHHhc------CCeeeecCCcc---------------cccc
Q 019775 39 SLPHTLTFTQTLLKC---RGTIFFTGVGKSGFVANKISQTLISL------GIKSGFLNPLD---------------ALHG 94 (336)
Q Consensus 39 ~~~~i~~~~~~i~~a---~~~I~i~G~G~s~~~a~~~~~~l~~~------g~~~~~~~~~~---------------~~~~ 94 (336)
..+.|+++++.+.++ +++||++|.|.|...|.+++.++... ..+...+.+.. ....
T Consensus 17 ~~~~i~~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 96 (138)
T PF13580_consen 17 QAEAIEKAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLL 96 (138)
T ss_dssp SHHHHHHHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHH
Confidence 557777777776433 37999999999999999999999865 33444444321 0011
Q ss_pred ccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeC
Q 019775 95 DIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTS 136 (336)
Q Consensus 95 ~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~ 136 (336)
....+.++|++|+||.||+++.++++++.||++|++||+||+
T Consensus 97 ~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 97 ALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp HHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred HHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 112389999999999999999999999999999999999995
No 101
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.50 E-value=2.2e-13 Score=104.21 Aligned_cols=105 Identities=19% Similarity=0.210 Sum_probs=90.8
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcC---CCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCC--Ccc
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDE---EYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGP--DAM 295 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~---~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~--~~~ 295 (336)
.+++.++.++.++.+.|.+.+...+||+|+ +|+++|+++.++++.... . ..++.++|.+.+..+.. +++
T Consensus 4 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~--~----~~~v~~~~~~~~~~~~~~~~~~ 77 (114)
T cd04602 4 PSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD--S----ETPLSEVMTPREVLVVAPTGIT 77 (114)
T ss_pred CeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc--c----CCCHHHhcCCCceEEECCCCCC
Confidence 357899999999999999888899999997 689999999999875321 1 34688899887777766 999
Q ss_pred HHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775 296 AVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS 333 (336)
Q Consensus 296 l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~ 333 (336)
+.++++.|.++ +...+||++++|+++|+||+.|+++
T Consensus 78 l~~~l~~~~~~--~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 78 LEEANEILRES--KKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred HHHHHHHHHhc--CCCceeEECCCCeEEEEEEHHHhhc
Confidence 99999999999 8999999998899999999999976
No 102
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.50 E-value=2.1e-13 Score=103.36 Aligned_cols=103 Identities=21% Similarity=0.304 Sum_probs=89.5
Q ss_pred cccCCCcHHHHHHHHHhcC-----cceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHH
Q 019775 223 VCKEGDLIMDQLVELTSKG-----CGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAV 297 (336)
Q Consensus 223 ~~~~~~~v~~~~~~~~~~~-----~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~ 297 (336)
+++++.++.++++.|.+++ +..+||+|++|+++|+++.+++... . ...++.+++.+++..+.+++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~----~---~~~~v~~~~~~~~~~i~~~~~~~ 73 (109)
T cd04606 1 AVREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA----D---PDTPVSDIMDTDVISVSADDDQE 73 (109)
T ss_pred CccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC----C---CcchHHHHhCCCCeEEcCCCCHH
Confidence 3578899999999998776 4689999988999999999998752 1 14568888888888999999999
Q ss_pred HHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 298 EAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 298 ~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
++++.|.++ +.+.+||++++|+++|+|++.|++++
T Consensus 74 ~~~~~~~~~--~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 74 EVARLFEKY--DLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred HHHHHHHHc--CCceeeeECCCCcEEEEEEhHHhhhh
Confidence 999999998 88999999988999999999999875
No 103
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.50 E-value=2.5e-13 Score=124.95 Aligned_cols=126 Identities=23% Similarity=0.308 Sum_probs=113.8
Q ss_pred hhhhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhc
Q 019775 204 GKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMC 283 (336)
Q Consensus 204 ~~~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~ 283 (336)
.+..+..+.+++..+.. ++++..++++|..+|.+++.+.+.++++++...||||++|+...+...+. ....+++++|
T Consensus 144 ~e~~~trv~~~~~~~~~--~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~-~~~~~V~evm 220 (610)
T COG2905 144 SEFILTRVGEVKTLPAV--TVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGR-SKTQKVSEVM 220 (610)
T ss_pred chHHHHHHHHHhcCCCc--ccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCC-Ccccchhhhh
Confidence 34456688899888754 89999999999999999999999999999999999999999999987443 3578999999
Q ss_pred CCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhcC
Q 019775 284 NRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAG 335 (336)
Q Consensus 284 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~~ 335 (336)
+.++..|..++-+.+|+-+|.++ +++++||+++ |+++|+||..||++..
T Consensus 221 T~p~~svd~~~~~feAml~m~r~--~I~hl~V~e~-gq~~Gilt~~dIl~l~ 269 (610)
T COG2905 221 TSPVISVDRGDFLFEAMLMMLRN--RIKHLPVTED-GQPLGILTLTDILRLF 269 (610)
T ss_pred ccCceeecCcchHHHHHHHHHHh--CCceeeeecC-CeeeEEeeHHHHHHhh
Confidence 99999999999999999999999 9999999988 9999999999999864
No 104
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=99.49 E-value=1.9e-12 Score=103.88 Aligned_cols=162 Identities=17% Similarity=0.219 Sum_probs=105.9
Q ss_pred hHHHHHHHH----HHcCCCeEEEEeccchHHHHHHHHHHHHhcCCee-eecCC------------------ccccccccC
Q 019775 41 PHTLTFTQT----LLKCRGTIFFTGVGKSGFVANKISQTLISLGIKS-GFLNP------------------LDALHGDIG 97 (336)
Q Consensus 41 ~~i~~~~~~----i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~-~~~~~------------------~~~~~~~~~ 97 (336)
+.+++++++ +.+- ++||+||+|.|+.+|++.+++-..+-... ++..+ ...+.....
T Consensus 22 ~~i~kaa~lVAesi~n~-g~i~~FG~GHShm~aeEv~yRAGGLa~~~pIL~~plMLhega~ass~lErieg~~~~~l~~~ 100 (243)
T COG4821 22 ENIKKAAKLVAESIMND-GRIYVFGSGHSHMLAEEVFYRAGGLAPIKPILMEPLMLHEGAVASSYLERIEGYAKLFLHRL 100 (243)
T ss_pred HHHHHHHHHHHHHHhcC-CEEEEecCchHHHHHHHHHhhcCCccccccccCChhhhcccccccchhHhhhhHHHHHHHHh
Confidence 444555444 4455 69999999999999999999866552222 22211 111111122
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCC-----------ccccccCEEEEcCCCcccC-------
Q 019775 98 ILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGN-----------ALAAVCDMNVHLPVERELC------- 159 (336)
Q Consensus 98 ~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s-----------~l~~~ad~~i~~~~~~~~~------- 159 (336)
.++++|++|++|.||.++--+++++++|++||++|++|+-.-| .|.+++|+++.-.+.....
T Consensus 101 ~i~~~DVliviSnSGrNpvpie~A~~~rekGa~vI~vTSl~ySq~~~SRh~SGK~Ly~~aDvVlDN~av~GDAvl~~a~~ 180 (243)
T COG4821 101 QIRPNDVLIVISNSGRNPVPIEVAEYAREKGAKVIAVTSLDYSQSQASRHKSGKLLYEFADVVLDNGAVKGDAVLEIAGS 180 (243)
T ss_pred cCCCCCEEEEEeCCCCCCcchHHHHHHHhcCCeEEEEehhhhhhhchhcccchhHHhhhcceeeeCCCcccchheeecCc
Confidence 4789999999999999999999999999999999999987766 6788899998654433211
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHh---hcCCChHHHhhcCCCCchh
Q 019775 160 PFDLAPVTSTAIQMVFGDTVAIAMMG---ARNLTRDEYAANHPAGRIG 204 (336)
Q Consensus 160 ~~~~~~~~s~~~~~~l~d~l~~~~~~---~~~~~~~~~~~~~~~~~~~ 204 (336)
.-..+++++.+.. .+++.++....+ .++.++.-|...+-++.-+
T Consensus 181 ei~~~ptSt~~g~-~ilqa~faeai~~mv~~g~~pPvf~S~Nidgad~ 227 (243)
T COG4821 181 EIKVGPTSTVSGV-TILQATFAEAIELMVEKGYTPPVFLSANIDGADE 227 (243)
T ss_pred cccccCcchhHHH-HHHHHHHHHHHHHHHhCCCCCCeeeecCCCChhH
Confidence 1123555544444 444544443333 3455555565555555433
No 105
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.49 E-value=4.8e-13 Score=101.77 Aligned_cols=109 Identities=26% Similarity=0.366 Sum_probs=93.5
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM 300 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 300 (336)
+.+++++.++.++.+.|.+.+.+.+||+++ ++++|+++..++...+..........++.++|.+++.++.+++++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 81 (112)
T cd04802 3 VITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNEAA 81 (112)
T ss_pred cEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHHHHH
Confidence 457899999999999999888999999995 4999999999999876543222224578889988888999999999999
Q ss_pred HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775 301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVS 333 (336)
Q Consensus 301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~ 333 (336)
+.|.++ +...+||+++ ++++|+|++.|+++
T Consensus 82 ~~~~~~--~~~~~~Vv~~-~~~~Gvi~~~di~~ 111 (112)
T cd04802 82 KLMAKH--GIKRLPVVDD-DELVGIVTTTDIVM 111 (112)
T ss_pred HHHHHc--CCCeeEEeeC-CEEEEEEEhhhhhc
Confidence 999998 8889999988 49999999999975
No 106
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.49 E-value=6.6e-13 Score=102.69 Aligned_cols=111 Identities=23% Similarity=0.362 Sum_probs=94.8
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcC----C-----chhhhhHhhhcCCCCeeeC
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASG----E-----GIFKLTVGEMCNRSPRTIG 291 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~----~-----~~~~~~i~~~~~~~~~~v~ 291 (336)
+++++++.++.++.+.|.+.+++.+||+|+ |+++|+++..++...+.... . .....++.++|.+++..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (122)
T cd04637 3 VVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPITVS 81 (122)
T ss_pred ceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCeeeC
Confidence 457899999999999999989999999996 89999999999987654210 0 0113568888988999999
Q ss_pred CCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 292 PDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 292 ~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
+++++.++++.|.++ +...+||++++|+++|++++.|+++.
T Consensus 82 ~~~~l~~~~~~~~~~--~~~~~~vv~~~~~~~Gvit~~dll~~ 122 (122)
T cd04637 82 PDTPVDEASKLLLEN--SISCLPVVDENGQLIGIITWKDLLKY 122 (122)
T ss_pred CCCcHHHHHHHHHHc--CCCeEeEECCCCCEEEEEEHHHhhhC
Confidence 999999999999998 88999999988999999999999863
No 107
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.48 E-value=2.5e-13 Score=102.93 Aligned_cols=105 Identities=20% Similarity=0.296 Sum_probs=90.9
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCC-CccHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGP-DAMAVEA 299 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~-~~~l~~~ 299 (336)
++.++++.++.++.+.|.++++..+||+|++|+++|+++.+++..... ...++.++|.+.+..+.. ++++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~------~~~~v~~~~~~~~~~~~~~~~~l~~~ 77 (110)
T cd04601 4 PITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETD------LDKPVSEVMTPENLLTTVEGTSLEEA 77 (110)
T ss_pred CeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeeccc------CCCCHHHhcccCceEEecCCCCHHHH
Confidence 457899999999999999889999999998899999999999864311 145788888777777777 9999999
Q ss_pred HHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775 300 MQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS 333 (336)
Q Consensus 300 ~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~ 333 (336)
++.|.+. +.+.+||++++|+++|+|++.|+++
T Consensus 78 ~~~~~~~--~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 78 LELLHEH--KIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred HHHHHHh--CCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 9999999 8999999998899999999999986
No 108
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.47 E-value=6.2e-13 Score=99.93 Aligned_cols=100 Identities=21% Similarity=0.224 Sum_probs=88.6
Q ss_pred cccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHHHH
Q 019775 223 VCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQK 302 (336)
Q Consensus 223 ~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~ 302 (336)
++++++++.++.+.+.+.+...+||+|+ ++++|+++.+++.... ..++.++|.+.+.++.++.++.++++.
T Consensus 5 ~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~--------~~~~~~~~~~~~~~v~~~~~l~~a~~~ 75 (104)
T cd04594 5 KVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENAT--------YGDVVDYIVRGIPYVRLTSTAEEAWEV 75 (104)
T ss_pred EECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhc--------ccchhhhhhcCCcEEcCCCCHHHHHHH
Confidence 6889999999999999989999999997 9999999999998532 134667788888999999999999999
Q ss_pred hcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 303 MESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 303 ~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
|.++ +...+||+++ |+++|+||+.|++++
T Consensus 76 ~~~~--~~~~~~Vv~~-~~~iGvit~~dl~~~ 104 (104)
T cd04594 76 MMKN--KTRWCPVVDD-GKFKGIVTLDSILDA 104 (104)
T ss_pred HHHc--CcceEEEEEC-CEEEEEEEHHHhhcC
Confidence 9999 8899999985 999999999999863
No 109
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.46 E-value=5.3e-13 Score=100.62 Aligned_cols=103 Identities=20% Similarity=0.300 Sum_probs=91.4
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM 300 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 300 (336)
+++++.+.+++++.+.|.+.+...+||+|+ ++++|+++..+|+.. . ...++.++|.+.+..+.+++++.+++
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~----~---~~~~~~~~~~~~~~~v~~~~~l~~~~ 75 (107)
T cd04610 4 VITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGK----D---PDETVEEIMSKDLVVAVPEMDIMDAA 75 (107)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhcc----C---ccccHHHhCCCCCeEECCCCCHHHHH
Confidence 567899999999999998888889999986 899999999999852 1 13568899988889999999999999
Q ss_pred HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775 301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVS 333 (336)
Q Consensus 301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~ 333 (336)
+.|.++ +...+||++++|+++|+|+..|+++
T Consensus 76 ~~~~~~--~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 76 RVMFRT--GISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred HHHHHh--CCCeEeEECCCCeEEEEEEHHHhhc
Confidence 999988 8889999998899999999999986
No 110
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.46 E-value=1e-12 Score=101.38 Aligned_cols=111 Identities=27% Similarity=0.335 Sum_probs=94.7
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCC--------chhhhhHhhhcCCCCeeeCC
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGE--------GIFKLTVGEMCNRSPRTIGP 292 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~--------~~~~~~i~~~~~~~~~~v~~ 292 (336)
+++++++.++.++.+.+.+.+++.+||+|++++++|+++..++......... .....++.++|.+++..+..
T Consensus 3 ~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~ 82 (121)
T cd04584 3 VVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVITVHP 82 (121)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeEECC
Confidence 4578999999999999998889999999988999999999999875432110 11235688888888999999
Q ss_pred CccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 293 DAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 293 ~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
++++.++++.|.+. +...+||+++ |+++|+++..|++++
T Consensus 83 ~~~l~~~~~~~~~~--~~~~~~V~~~-~~~~Gvv~~~di~~~ 121 (121)
T cd04584 83 LDTVEEAALLMREH--RIGCLPVVED-GRLVGIITETDLLRT 121 (121)
T ss_pred CCcHHHHHHHHHHc--CCCeEEEeeC-CEEEEEEEHHHhhcC
Confidence 99999999999998 8899999988 999999999999864
No 111
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.46 E-value=6e-13 Score=99.97 Aligned_cols=102 Identities=26% Similarity=0.338 Sum_probs=90.6
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM 300 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 300 (336)
++.++++.++.++.+.|.++++..+||+| +++++|+++.+++..... ..++.++|.+++.++.+++++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~~-------~~~~~~~~~~~~~~v~~~~~l~~~~ 74 (105)
T cd04599 3 PITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAHP-------NRLVADAMTREVVTISPEASLLEAK 74 (105)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcccc-------cCCHHHHccCCCEEECCCCCHHHHH
Confidence 45789999999999999988889999998 689999999999986321 3457888888899999999999999
Q ss_pred HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775 301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVS 333 (336)
Q Consensus 301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~ 333 (336)
+.|.++ +...+||+++ |+++|+||..|++.
T Consensus 75 ~~~~~~--~~~~~~Vv~~-~~~~G~it~~~l~~ 104 (105)
T cd04599 75 RLMEEK--KIERLPVLRE-RKLVGIITKGTIAL 104 (105)
T ss_pred HHHHHc--CCCEeeEEEC-CEEEEEEEHHHhcc
Confidence 999999 8999999998 99999999999974
No 112
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=6.9e-13 Score=102.39 Aligned_cols=110 Identities=24% Similarity=0.307 Sum_probs=93.9
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCC---------chhhhhHhhhcCCCCeeeC
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGE---------GIFKLTVGEMCNRSPRTIG 291 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~---------~~~~~~i~~~~~~~~~~v~ 291 (336)
+++++++.++.++.+.|.+.+.+.+||+|+ |+++|+++..++...+..... .....++.++|.+++..+.
T Consensus 3 ~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (121)
T cd04633 3 VITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVITIE 81 (121)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCceEEC
Confidence 457899999999999999889999999996 999999999999876542111 0123468888888899999
Q ss_pred CCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 292 PDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 292 ~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
+++++.++++.|.+. +.+.+||+++ |+++|+|+..|++++
T Consensus 82 ~~~~l~~~~~~~~~~--~~~~~~Vv~~-~~~~Gvi~~~dl~~~ 121 (121)
T cd04633 82 PDTSVSDVASLMLEN--NIGGLPVVDD-GKLVGIVTRTDILRY 121 (121)
T ss_pred CCCcHHHHHHHHHHc--CCCcccEEEC-CEEEEEEEHHHhhcC
Confidence 999999999999998 8999999998 999999999999863
No 113
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.46 E-value=8.1e-13 Score=99.59 Aligned_cols=99 Identities=24% Similarity=0.321 Sum_probs=88.0
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcC---CCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDE---EYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAV 297 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~---~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~ 297 (336)
...++++.++.++.+.+.+.++..+||+++ +|+++|+++.+++...... +|.+++.++.+++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~------------~m~~~~~~v~~~~~l~ 71 (105)
T cd04591 4 VVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN------------YIDPSPFTVSPRTSLE 71 (105)
T ss_pred eEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH------------hccCCCceECCCCcHH
Confidence 457899999999999999988889999997 6899999999999876532 6777888999999999
Q ss_pred HHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 298 EAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 298 ~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
++++.|.++ +.+.+||++ +|+++|+||+.|++++
T Consensus 72 ~~~~~~~~~--~~~~~pVv~-~~~~~Gvvt~~dl~~~ 105 (105)
T cd04591 72 KVHQLFRKL--GLRHLLVVD-EGRLVGIITRKDLLKA 105 (105)
T ss_pred HHHHHHHHc--CCCEEEEEE-CCeEEEEEEhhhhhcC
Confidence 999999999 899999996 4999999999999864
No 114
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.45 E-value=1.3e-12 Score=98.87 Aligned_cols=108 Identities=21% Similarity=0.329 Sum_probs=91.1
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM 300 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 300 (336)
+++++++.++.++.+.|.+++.+.+||+++ ++++|+++..++...+..... ....++.++|.+++..+++++++.+++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~l~~~~ 80 (110)
T cd04609 3 VVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKA-KFSLPVREVMGEPLPTVDPDAPIEELS 80 (110)
T ss_pred cEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhcccc-ccCcCHHHHhcCCCceeCCCCcHHHHH
Confidence 457899999999999999999999999997 999999999999987654221 113568888888888999999999999
Q ss_pred HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
+.|.+. . .+||++++|+++|+||+.|+++.
T Consensus 81 ~~~~~~--~--~~~vv~~~~~~~Gvvt~~di~~~ 110 (110)
T cd04609 81 ELLDRG--N--VAVVVDEGGKFVGIITRADLLKY 110 (110)
T ss_pred HHHHhC--C--ceeEEecCCeEEEEEeHHHhhcC
Confidence 999874 2 37888888999999999999863
No 115
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.45 E-value=1.9e-12 Score=97.89 Aligned_cols=111 Identities=30% Similarity=0.441 Sum_probs=95.3
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM 300 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 300 (336)
+++++++.++.++.+.|.+.+...+||++++++++|+++.+++.......... ....+.+++..++..+.+++++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (113)
T cd02205 3 VVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLD-PLVTVGDVMTRDVVTVSPDTSLEEAA 81 (113)
T ss_pred ceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCC-ccccHHHHhcCCceecCCCcCHHHHH
Confidence 45789999999999999998889999999889999999999999877642211 11226678888888999999999999
Q ss_pred HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
+.|.+. +...+||++++|+++|+++..|+++.
T Consensus 82 ~~~~~~--~~~~~~V~~~~~~~~G~i~~~dl~~~ 113 (113)
T cd02205 82 ELMLEH--GIRRLPVVDDEGRLVGIVTRSDILRA 113 (113)
T ss_pred HHHHHc--CCCEEEEEcCCCcEEEEEEHHHhhcC
Confidence 999998 88999999998999999999999863
No 116
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.44 E-value=5.7e-13 Score=125.21 Aligned_cols=125 Identities=22% Similarity=0.257 Sum_probs=106.2
Q ss_pred CCCCchhhh----hhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCc
Q 019775 198 HPAGRIGKS----LIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEG 273 (336)
Q Consensus 198 ~~~~~~~~~----~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~ 273 (336)
|++.+++.+ ..+++.++|.+++ +++.++.+++++.++|.+++.+.+||+| +++++|+||.+||... .
T Consensus 73 h~n~~i~~qae~v~~VKv~eim~~~p--vtv~p~~tI~eA~~lm~~~~~~~~vVvD-~gklvGIVT~rDL~~~----~-- 143 (475)
T TIGR01303 73 PQDLPIPAVKQTVAFVKSRDLVLDTP--ITLAPHDTVSDAMALIHKRAHGAAVVIL-EDRPVGLVTDSDLLGV----D-- 143 (475)
T ss_pred eCCCCHHHHHHHHhhcchhhccccCC--eEECCCCCHHHHHHHHHhcCCeEEEEEE-CCEEEEEEEHHHhhcC----C--
Confidence 444454443 3667788888774 4899999999999999999999999998 4799999999998532 1
Q ss_pred hhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 274 IFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 274 ~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
...++.++|.+++.++.+++++.++++.|.++ +.+.+||+|++|+++|+||++||++.
T Consensus 144 -~~~~V~dIMt~~litv~~~~sL~eAl~lM~~~--~i~~LPVVD~~g~LvGIIT~~DLl~~ 201 (475)
T TIGR01303 144 -RFTQVRDIMSTDLVTAPADTEPRKAFDLLEHA--PRDVAPLVDADGTLAGILTRTGALRA 201 (475)
T ss_pred -CCCCHHHHccCCceEeCCCCcHHHHHHHHHHc--CCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence 13579999999999999999999999999999 99999999988999999999999974
No 117
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.42 E-value=1e-12 Score=123.73 Aligned_cols=115 Identities=19% Similarity=0.300 Sum_probs=101.1
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC---CcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcC-C
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE---YHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCN-R 285 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~---~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~-~ 285 (336)
..+++|.++ +++++++.++.++.+.|.+++++.+||+|++ ++++|+|+.+||+.... ...++.++|. +
T Consensus 81 ~~~~~~~~~--~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~------~~~~V~dvm~~~ 152 (450)
T TIGR01302 81 RAENGIISD--PVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD------KGKPVSEVMTRE 152 (450)
T ss_pred cccCceecC--ceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc------CCCCHHHhhCCC
Confidence 446667766 4589999999999999999999999999987 79999999999975321 1467899998 4
Q ss_pred CCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 286 SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 286 ~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
++.++.+++++.++++.|.++ +.+.+||+|++|+++|+||+.||++.
T Consensus 153 ~~~~V~~~~sl~eal~~m~~~--~~~~lpVVDe~G~lvGiVT~~DIl~~ 199 (450)
T TIGR01302 153 EVITVPEGIDLEEALKVLHEH--RIEKLPVVDKNGELVGLITMKDIVKR 199 (450)
T ss_pred CCEEECCCCcHHHHHHHHHHc--CCCeEEEEcCCCcEEEEEEhHHhhhc
Confidence 889999999999999999999 99999999999999999999999875
No 118
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.
Probab=99.42 E-value=1.1e-11 Score=110.75 Aligned_cols=99 Identities=28% Similarity=0.330 Sum_probs=85.1
Q ss_pred cCCCeEEEEeccchHHHHHHHHHHHHhcC--CeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCC
Q 019775 52 KCRGTIFFTGVGKSGFVANKISQTLISLG--IKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGA 129 (336)
Q Consensus 52 ~a~~~I~i~G~G~s~~~a~~~~~~l~~~g--~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~ 129 (336)
.+ ++|+++|.|.|..+|.++.+.|...+ ++++...+.. .....+++|++|++|.||++.+++.+++.|+++|+
T Consensus 20 ~~-~~I~i~G~G~S~~~a~~l~~~l~~~~~~~~v~~~~d~~----l~~~~~~~dlvI~iS~SG~t~e~~~a~~~A~~~g~ 94 (308)
T TIGR02128 20 IY-DEIVICGMGGSGIAGRIISILLLEKSFQGPVFVVKDYR----LPRFVDGKTLLIAVSYSGNTEETLSAVEEAKKKGA 94 (308)
T ss_pred cC-CEEEEEEecHHHHHHHHHHHHHHHhCCCccEEEEcCcc----ccccCCCCeEEEEEcCCCCCHHHHHHHHHHHHcCC
Confidence 36 59999999999999999999999885 5777765542 23456899999999999999999999999999999
Q ss_pred eEEEEeCCCCCcccccc----CEEEEcCCCcc
Q 019775 130 YLVSVTSVEGNALAAVC----DMNVHLPVERE 157 (336)
Q Consensus 130 ~vi~IT~~~~s~l~~~a----d~~i~~~~~~~ 157 (336)
++|+||+ +++++++| +.++.+|.+..
T Consensus 95 ~ii~iT~--~g~L~~~a~~~~~~~i~vP~~~~ 124 (308)
T TIGR02128 95 KVIAITS--GGRLEEMAKERGLDVIKIPKGLQ 124 (308)
T ss_pred EEEEECC--CcHHHHHHHhcCCeEEEcCCCCC
Confidence 9999996 46899998 78888888644
No 119
>PRK11573 hypothetical protein; Provisional
Probab=99.42 E-value=1.8e-12 Score=120.68 Aligned_cols=123 Identities=15% Similarity=0.158 Sum_probs=104.8
Q ss_pred hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC-CcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCC
Q 019775 208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE-YHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRS 286 (336)
Q Consensus 208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~-~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~ 286 (336)
..+|+++|.|...+.+++.+.++.++.+.+.+++++++||++++ +.++|+++.+|++....+... .....+.+++ ++
T Consensus 186 ~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~-~~~~~l~~~~-r~ 263 (413)
T PRK11573 186 KVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE-FTKENMLRAA-DE 263 (413)
T ss_pred CCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCc-CCHHHHHhhc-cC
Confidence 44899999999999999999999999999999999999999854 689999999999975543211 1123455555 46
Q ss_pred CeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 287 PRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 287 ~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
+.+|+++.++.++++.|+++ +.+...|+|+.|...|+||..||++.
T Consensus 264 ~~~Vpe~~~l~~lL~~~~~~--~~~~AiVvDEyG~~~GiVTleDilEe 309 (413)
T PRK11573 264 IYFVPEGTPLSTQLVKFQRN--KKKVGLVVDEYGDIQGLVTVEDILEE 309 (413)
T ss_pred CeEeCCCCcHHHHHHHHHhc--CCeEEEEEecCCCeEEEeeHHHHHHH
Confidence 78999999999999999999 89999999999999999999999863
No 120
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.42 E-value=9.2e-13 Score=124.34 Aligned_cols=115 Identities=19% Similarity=0.175 Sum_probs=100.6
Q ss_pred hhhhhccccCCCCccccCCCcHHHHHHHHHh-----cCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhc
Q 019775 209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTS-----KGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMC 283 (336)
Q Consensus 209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~ 283 (336)
.+++++|.++ +++++++.|++++.+.+++ ++...+||+|++++++|+++.+|++.. . ...++.++|
T Consensus 131 ~tvg~iMt~~--~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a----~---~~~~v~~im 201 (449)
T TIGR00400 131 DSAGRIMTIE--YVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA----K---PEEILSSIM 201 (449)
T ss_pred chHHHhCcCc--eEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC----C---CCCcHHHHh
Confidence 4789999976 6699999999999999975 345678999988999999999998752 1 135799999
Q ss_pred CCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 284 NRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 284 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
.+++.++.+++++.++++.|+++ +...+||+|++|+++|+||..|+++.
T Consensus 202 ~~~~~~v~~~~~~~eal~~m~~~--~~~~lpVVD~~g~lvGiIt~~Dil~~ 250 (449)
T TIGR00400 202 RSSVFSIVGVNDQEEVARLIQKY--DFLAVPVVDNEGRLVGIVTVDDIIDV 250 (449)
T ss_pred CCCCeeECCCCCHHHHHHHHHHc--CCCEEeEEcCCCeEEEEEEHHHHHHH
Confidence 99888999999999999999999 89999999998999999999999863
No 121
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=99.41 E-value=2.9e-12 Score=116.52 Aligned_cols=172 Identities=20% Similarity=0.202 Sum_probs=136.0
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHhcC-C-------hhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-C
Q 019775 10 LLPHKVSENTLLDLFKSQQDHLNYFFQHL-S-------LPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-G 80 (336)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-------~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g 80 (336)
.+.+.+....+++-+-.+.+.+-.|..-. + ...++.-...|.++ +|+.++|+|.|++.|..-..-|..+ +
T Consensus 304 qImKG~yd~yMqKEI~EQpeS~~ntMRGRv~~~~~~V~LGGlk~~l~~irr~-rRli~iacgtSyhs~~A~R~ilEEL~e 382 (670)
T KOG1268|consen 304 QIMKGNYDYYMQKEIYEQPESLVNTMRGRVSFPLNKVVLGGLKDYLPEIRRC-RRLIMVACGTSYHSALATRPILEELSE 382 (670)
T ss_pred HHcCCchHhhhhhHHhhCchHHHHhccceeccccceeeecCCcchhhhhhhc-cccEEEEecchHHHHHHHHHHHHHHhc
Confidence 34455556666666666677776666432 1 23466777888899 7999999999999988887777766 6
Q ss_pred CeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCC
Q 019775 81 IKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCP 160 (336)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~ 160 (336)
++|..--.++.+... ..+-.+|+++++|+||+|.+++-++++|+++|+-+|.|||..+|.+++..++-+.+.++.|
T Consensus 383 iPV~vElAsDflDR~-~pifRdDvc~FvSqSGETaDtllaL~Yc~~~gAl~vGvtNtvGSsIsR~thCGvHiNaGpE--- 458 (670)
T KOG1268|consen 383 IPVSVELASDFLDRN-TPIFRDDVCFFVSQSGETADTLLALRYCKERGALTVGVTNTVGSSISRETHCGVHINAGPE--- 458 (670)
T ss_pred CCeeeehhhhhHhcC-CCceeccEEEEEecCCchHHHHHHHHHHHhcCceEEEeecccCcccccccccceeccCCCc---
Confidence 666654455555443 3455899999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhh
Q 019775 161 FDLAPVTSTAIQMVFGDTVAIAMMGA 186 (336)
Q Consensus 161 ~~~~~~~s~~~~~~l~d~l~~~~~~~ 186 (336)
.+.+.+.++++|+..+-++...+...
T Consensus 459 igvAsTKaYTSQ~i~lvm~aL~~s~d 484 (670)
T KOG1268|consen 459 IGVASTKAYTSQYIALVMFALWMSED 484 (670)
T ss_pred cceeechHHHHHHHHHHHHHHHhccc
Confidence 67788888999988777777666654
No 122
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.40 E-value=1.8e-12 Score=123.34 Aligned_cols=115 Identities=19% Similarity=0.297 Sum_probs=101.9
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcC-CCCe
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCN-RSPR 288 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~-~~~~ 288 (336)
.++++|.++ +++++++.++.++.+.|.+++++.+||+|++++++|+|+.+|+..... ...++.++|. +++.
T Consensus 88 ~~~dim~~~--~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~------~~~~V~dim~~~~~v 159 (486)
T PRK05567 88 RSESGVVTD--PVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETD------LSQPVSEVMTKERLV 159 (486)
T ss_pred hhhhcccCC--CeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhccc------CCCcHHHHcCCCCCE
Confidence 467788876 458999999999999999999999999999999999999999964321 1457889998 6788
Q ss_pred eeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 289 TIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 289 ~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
++.+++++.++++.|.++ +.+.+||+|++|+++|+||..||++.
T Consensus 160 ~v~~~~sl~eal~~m~~~--~~~~lpVVDe~g~lvGiIT~~DLl~~ 203 (486)
T PRK05567 160 TVPEGTTLEEALELLHEH--RIEKLPVVDDNGRLKGLITVKDIEKA 203 (486)
T ss_pred EECCCCCHHHHHHHHHHc--CCCEEEEEcCCCcEEEEEEhHHhhhh
Confidence 999999999999999999 99999999999999999999999864
No 123
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.40 E-value=2.2e-12 Score=122.33 Aligned_cols=110 Identities=17% Similarity=0.126 Sum_probs=97.1
Q ss_pred cccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcC---CCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCC--Cee
Q 019775 215 MKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDE---EYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRS--PRT 289 (336)
Q Consensus 215 m~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~---~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~--~~~ 289 (336)
|.++ +++++++.++.++.++|.+++++.+||+|+ +++++|+||.+|+.... . ...++.++|.+. ..+
T Consensus 106 mi~d--pvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~---~---~~~~V~eIMt~~~~lvt 177 (505)
T PLN02274 106 FVSD--PVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN---D---RETKLSEVMTSDDDLVT 177 (505)
T ss_pred ccCC--CeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc---c---cCCcHHHHhccCCCcEE
Confidence 5665 458999999999999999999999999996 47999999999997532 1 256799999876 679
Q ss_pred eCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 290 IGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 290 v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
+.+++++.++++.|.++ +.+.+||+|++++++|+||++||++.
T Consensus 178 v~~~~sL~eAl~~m~~~--~~~~LPVVD~~g~LvGvITr~DIlk~ 220 (505)
T PLN02274 178 APAGIDLEEAEAVLKDS--KKGKLPLVNEDGELVDLVTRTDVKRV 220 (505)
T ss_pred ECCCCCHHHHHHHHHHc--CCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence 99999999999999999 99999999988999999999999875
No 124
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.39 E-value=2.6e-12 Score=122.18 Aligned_cols=120 Identities=20% Similarity=0.188 Sum_probs=100.7
Q ss_pred hhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCC
Q 019775 207 LIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRS 286 (336)
Q Consensus 207 ~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~ 286 (336)
..++++++|.++ +.++.+++++.++++.|.+.+++.+||+|++++++|+|+.+|+...+..... ....++.++|.++
T Consensus 333 ~~~~v~~im~~~--~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-~~~~~v~~im~~~ 409 (454)
T TIGR01137 333 KNATVKDLHLPA--PVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKA-NPDDAVSKVMSKK 409 (454)
T ss_pred ccCCHHHhCcCC--CeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCC-CcCCCHHHhcCCC
Confidence 357899999887 5589999999999999998899999999988999999999999987654221 1235788999888
Q ss_pred CeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 287 PRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 287 ~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
+.++.+++++.++++.|.++ + .|||+++|+++|+||++||+++
T Consensus 410 ~~~v~~~~~l~~a~~~~~~~--~---~~vV~~~g~liGvvt~~dll~~ 452 (454)
T TIGR01137 410 FIQIGEGEKLSDLSKFLEKN--S---SAIVTEEGKPIGVVTKIDLLSF 452 (454)
T ss_pred CeEECCcCcHHHHHHHHHHC--C---eeEEEECCEEEEEEEHHHHHHh
Confidence 88999999999999999876 3 3455556999999999999875
No 125
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.39 E-value=1.8e-12 Score=122.87 Aligned_cols=114 Identities=18% Similarity=0.162 Sum_probs=99.2
Q ss_pred hhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC---CcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCC--
Q 019775 211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE---YHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNR-- 285 (336)
Q Consensus 211 v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~---~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~-- 285 (336)
.++.|..++ ++++++.++.++.++|.+++++.+||+|++ ++++|+|+.+|++... . ...++.++|.+
T Consensus 98 ~e~g~i~dp--vtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~---~---~~~~V~diMt~~~ 169 (495)
T PTZ00314 98 FENGFIMDP--YVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK---D---KSTPVSEVMTPRE 169 (495)
T ss_pred cccccccCC--eecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc---c---CCCCHHHhhCCcC
Confidence 345666664 489999999999999999999999999963 7999999999997321 1 24679999987
Q ss_pred CCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 286 SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 286 ~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
++.++.+++++.++++.|.++ +.+.+||+|++++++|+||++||++.
T Consensus 170 ~lvtv~~~~sl~eAl~lm~e~--~i~~LPVVd~~g~liGIIT~~DIl~~ 216 (495)
T PTZ00314 170 KLVVGNTPISLEEANEVLRES--RKGKLPIVNDNGELVALVSRSDLKKN 216 (495)
T ss_pred CceEeCCCCCHHHHHHHHHHc--CCCeEEEEcCCCcEEEEEEehHhhhc
Confidence 778899999999999999999 99999999999999999999999975
No 126
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=4.8e-12 Score=100.95 Aligned_cols=109 Identities=26% Similarity=0.355 Sum_probs=93.6
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCC--c-------------------------
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGE--G------------------------- 273 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~--~------------------------- 273 (336)
+++++++.++.++.+.|.+.+++.+||+|+ ++++|+++..++...+..... .
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (143)
T cd04634 3 PITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETKR 81 (143)
T ss_pred cEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHHH
Confidence 457899999999999999999999999997 999999999999887643220 0
Q ss_pred ----hhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775 274 ----IFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS 333 (336)
Q Consensus 274 ----~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~ 333 (336)
....++.++|.+++..+.+++++.++++.|.++ +...+||+++ |+++|+|++.|+++
T Consensus 82 ~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~--~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 82 ALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRH--KIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHc--CCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 013467788888899999999999999999998 8889999998 99999999999975
No 127
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=5.1e-12 Score=97.15 Aligned_cols=110 Identities=18% Similarity=0.173 Sum_probs=90.4
Q ss_pred CccccCCCcHHHHHHHHHhcC-cceEEEEcCCCcEEEEeeHHHHHHHHHhcC--CchhhhhHhhhcCCCCeeeCCCccHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKG-CGCLLVIDEEYHLIGTFTDGDLRRTLKASG--EGIFKLTVGEMCNRSPRTIGPDAMAV 297 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~-~~~ipVvd~~~~~~G~it~~dl~~~~~~~~--~~~~~~~i~~~~~~~~~~v~~~~~l~ 297 (336)
++++++++++.++.+.+...+ ++.+||+|+ |+++|+++.+++...+.... ......++.++|.+++..+.+++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~ 81 (119)
T cd04598 3 APTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADTPLE 81 (119)
T ss_pred cCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCCCHH
Confidence 458899999999999998776 889999998 99999999999986544211 00113568889999999999999999
Q ss_pred HHHHHhcCCCCCcc---EeEEEeCCCcEEEEEehhhHhh
Q 019775 298 EAMQKMESPPSPVQ---FLPVINRQNILIGIVTLHGLVS 333 (336)
Q Consensus 298 ~~~~~~~~~~~~~~---~l~Vv~~~~~~iGiit~~di~~ 333 (336)
++++.|.++ +.. ..+|++++|+++|+|+..|+++
T Consensus 82 ~~~~~~~~~--~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 82 EVSRLATGR--DSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred HHHHHHHcC--CcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 999999887 543 4468888899999999999975
No 128
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=6.3e-12 Score=94.65 Aligned_cols=103 Identities=25% Similarity=0.317 Sum_probs=89.6
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM 300 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 300 (336)
+.++.++.++.++...+.+.+++.+||++++++++|+++.+++.... . ..++.++|..++.++.+++++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~---~----~~~~~~~~~~~~~~v~~~~~l~~~~ 75 (106)
T cd04638 3 VVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNP---E----EEQLALLMTRDPPTVSPDDDVKEAA 75 (106)
T ss_pred cEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhcc---c----cchHHHHhcCCCceECCCCCHHHHH
Confidence 45788889999999999988889999999889999999999997521 1 2457777888888999999999999
Q ss_pred HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775 301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVS 333 (336)
Q Consensus 301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~ 333 (336)
+.|.++ +.+.+||+++ |+++|+|+..|+++
T Consensus 76 ~~~~~~--~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 76 KLMVEN--NIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred HHHHHc--CCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 999998 8899999986 89999999999976
No 129
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=99.34 E-value=1.6e-11 Score=99.40 Aligned_cols=105 Identities=20% Similarity=0.300 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHc---CCCeEEEEeccchHH---HHHHHHHHHHhcCCeeeecCC--ccccccccCCCC-CCcEEEEEeCC
Q 019775 41 PHTLTFTQTLLK---CRGTIFFTGVGKSGF---VANKISQTLISLGIKSGFLNP--LDALHGDIGILS-SDDILVMFSKS 111 (336)
Q Consensus 41 ~~i~~~~~~i~~---a~~~I~i~G~G~s~~---~a~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~~~-~~dlvi~iS~s 111 (336)
+.++++++.+.+ . ++|+++|.|.|+. ++.++..++.+.+.+++++.. .+.+......++ +++++|++|.|
T Consensus 5 ~~i~~~~~~i~~~~~~-~~iv~~GiGGS~lg~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~~tlvi~iSkS 83 (158)
T cd05015 5 ERIKEFAEKVRSGKKI-TDVVVIGIGGSDLGPRAVYEALKPYFKGGLRLHFVSNVDPDDLAELLKKLDPETTLFIVISKS 83 (158)
T ss_pred HHHHHHHHHHhcCCCC-CEEEEEecCccHHHHHHHHHHHHhhccCCceEEEEeCCCHHHHHHHHHhCCcccEEEEEEECC
Confidence 567788888765 5 6999999999998 777777777666888766654 433333444454 89999999999
Q ss_pred CCcHHHHHHHHHHHH---------cCCeEEEEeCCCCCccccccC
Q 019775 112 GNTEELLKVVPCAKA---------KGAYLVSVTSVEGNALAAVCD 147 (336)
Q Consensus 112 G~~~~~~~~~~~ak~---------~g~~vi~IT~~~~s~l~~~ad 147 (336)
|.|.|++..++.+++ .+.++|+||+ +++++.+.|+
T Consensus 84 G~T~Et~~~~~~a~~~l~~~~~~~~~~~~vaiT~-~~s~l~~~a~ 127 (158)
T cd05015 84 GTTLETLANARLAREWLEEAGGDDLAKHFVAITD-NGSGLLKKAG 127 (158)
T ss_pred cCCHHHHHHHHHHHHHHHHhccccccceEEEEcC-CChHHHHHcC
Confidence 999999999999999 8999999999 6778877565
No 130
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.34 E-value=3e-11 Score=119.07 Aligned_cols=154 Identities=13% Similarity=0.203 Sum_probs=123.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCC-eeeecCCccccccccCCCC--CCcE
Q 019775 28 QDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGI-KSGFLNPLDALHGDIGILS--SDDI 104 (336)
Q Consensus 28 ~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~-~~~~~~~~~~~~~~~~~~~--~~dl 104 (336)
.+.++++.+.. .+.++++++.+.++ ++++++|.|.++.+|.+++.+|.+++. ++..++..+..+.....++ ++++
T Consensus 472 p~~~~~~l~~~-~~~~~~~a~~l~~a-~~i~~lGrG~~~~iA~E~ALKLkEi~~i~ae~~~~~E~~HGp~ali~~~~~~~ 549 (640)
T PTZ00295 472 PTYIGMTLKSC-EEQCKRIAEKLKNA-KSMFILGKGLGYPIALEGALKIKEITYIHAEGFSGGALKHGPFALIDKEKNTP 549 (640)
T ss_pred HHHHHHHHHHh-HHHHHHHHHHHhCC-CcEEEEECCCCHHHHHHHHHHHHHHhhhhhhhcChHHhhhhHHHHhcCCCCCe
Confidence 33444444332 36789999999999 699999999999999999999999976 7777777776766666677 7899
Q ss_pred EEEEeCCCC-cHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHH
Q 019775 105 LVMFSKSGN-TEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAM 183 (336)
Q Consensus 105 vi~iS~sG~-~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~ 183 (336)
+|+++.+|. ++.+.++++.++++|+++|+||++. +++.+.+|.++.++.. + ..+.+....-+.+|...+
T Consensus 550 VI~i~~~~~~~~~~~~~~~~lk~rga~vi~It~~~-~~l~~~ad~~i~ip~~-~--------~l~p~~~~ip~Qllay~l 619 (640)
T PTZ00295 550 VILIILDDEHKELMINAAEQVKARGAYIIVITDDE-DLVKDFADEIILIPSN-G--------PLTALLAVIPLQLLAYEI 619 (640)
T ss_pred EEEEEcCCccHHHHHHHHHHHHHcCCEEEEEecCC-ccccccCCeEEEeCCc-c--------cchHHHHHHHHHHHHHHH
Confidence 999999988 6889999999999999999999875 5688899999988864 2 123455567778888888
Q ss_pred HhhcCCChHH
Q 019775 184 MGARNLTRDE 193 (336)
Q Consensus 184 ~~~~~~~~~~ 193 (336)
...++.+++.
T Consensus 620 a~~~G~dpD~ 629 (640)
T PTZ00295 620 AILRGINPDK 629 (640)
T ss_pred HHHcCCCCCC
Confidence 8888877655
No 131
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.33 E-value=2.7e-11 Score=92.67 Aligned_cols=107 Identities=29% Similarity=0.490 Sum_probs=94.5
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM 300 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 300 (336)
.+++.++.++.++...|.++++..+||++. ++++|++|..|+.......... ..++.++|.+++..+.++.++.++.
T Consensus 9 ~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~~~--~~~v~~v~~~~~~~~~~~~~~~~~~ 85 (117)
T COG0517 9 VITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGGKR--LLPVKEVMTKPVVTVDPDTPLEEAL 85 (117)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccCCc--cccHHHhccCCcEEECCCCCHHHHH
Confidence 568999999999999999999999999984 4799999999999988753321 1268999988889999999999999
Q ss_pred HHhcC-CCCCccEeEEEeCCC-cEEEEEehhhHh
Q 019775 301 QKMES-PPSPVQFLPVINRQN-ILIGIVTLHGLV 332 (336)
Q Consensus 301 ~~~~~-~~~~~~~l~Vv~~~~-~~iGiit~~di~ 332 (336)
+.|.+ + +...+||+++++ +++|++|..|++
T Consensus 86 ~~m~~~~--~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 86 ELMVERH--KIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred HHHHHHc--CcCeEEEEECCCCeEEEEEEHHHcC
Confidence 99999 8 899999999985 999999999974
No 132
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.32 E-value=1.4e-11 Score=115.78 Aligned_cols=121 Identities=17% Similarity=0.275 Sum_probs=103.7
Q ss_pred hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEc-CCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCC
Q 019775 208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVID-EEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRS 286 (336)
Q Consensus 208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd-~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~ 286 (336)
..+|+++|.|...+.+++.+.+++++.+.+.+++++++||++ +.+.++|+++.+||+........ .......+ ++
T Consensus 205 ~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~---~~~~~~~~-~~ 280 (429)
T COG1253 205 DRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS---DLDLRVLV-RP 280 (429)
T ss_pred CcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc---ccchhhcc-cC
Confidence 458899999999899999999999999999999999999999 44689999999999998876321 01111222 37
Q ss_pred CeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 287 PRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 287 ~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
|.+|+++.++.++++.|++. +.+...|+|+.|...|+||..||+++
T Consensus 281 ~~~Vpet~~~~~lL~~~r~~--~~hmAiVvDEyG~~~GlVTleDIiEe 326 (429)
T COG1253 281 PLFVPETLSLSDLLEEFREE--RTHMAIVVDEYGGVEGLVTLEDIIEE 326 (429)
T ss_pred CeEecCCCcHHHHHHHHHHh--CCeEEEEEEcCCCeEEEeEHHHHHHH
Confidence 88999999999999999999 89999999999999999999999864
No 133
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.28 E-value=3.8e-11 Score=116.63 Aligned_cols=125 Identities=17% Similarity=0.180 Sum_probs=106.3
Q ss_pred hhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcC--------------
Q 019775 206 SLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASG-------------- 271 (336)
Q Consensus 206 ~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~-------------- 271 (336)
...++|+++|.+. ++++++++++.++++.|.+++.+.+||+|++|+++|+|+..|+........
T Consensus 65 ~~~~~V~dim~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~ 142 (546)
T PRK14869 65 DVKPQVRDLEIDK--PVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPEILSKSPTSLEN 142 (546)
T ss_pred ccCCcHHHhcCCC--CcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHH
Confidence 3356899999886 559999999999999999999999999998899999999999987543211
Q ss_pred ---------------------------------------------C----------------------------------
Q 019775 272 ---------------------------------------------E---------------------------------- 272 (336)
Q Consensus 272 ---------------------------------------------~---------------------------------- 272 (336)
+
T Consensus 143 i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~ 222 (546)
T PRK14869 143 IIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAK 222 (546)
T ss_pred HHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence 0
Q ss_pred -------------------chhhhhHhhhcC-CCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHh
Q 019775 273 -------------------GIFKLTVGEMCN-RSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLV 332 (336)
Q Consensus 273 -------------------~~~~~~i~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~ 332 (336)
.....++.++|. +++.++++++++.++.+.|.++ +.+.+||+|++|+++|+||+.|++
T Consensus 223 ~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~--~~~~~PVvd~~g~lvGiit~~dl~ 300 (546)
T PRK14869 223 ENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKS--RYRSYPVVDEDGKVVGVISRYHLL 300 (546)
T ss_pred hCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhc--CCCceEEEcCCCCEEEEEEHHHhh
Confidence 001246788998 7889999999999999999998 899999999889999999999998
Q ss_pred hc
Q 019775 333 SA 334 (336)
Q Consensus 333 ~~ 334 (336)
+.
T Consensus 301 ~~ 302 (546)
T PRK14869 301 SP 302 (546)
T ss_pred cc
Confidence 64
No 134
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=99.26 E-value=2.2e-10 Score=96.21 Aligned_cols=184 Identities=15% Similarity=0.168 Sum_probs=128.0
Q ss_pred cccCCCCcchHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHH-hcCCeee--
Q 019775 8 LDLLPHKVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLI-SLGIKSG-- 84 (336)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~-~~g~~~~-- 84 (336)
+|.+...+.-..+++--.....++++..-++. ..++.+++.+.+- .|.+..|.|+|.-++..=+..+- -+|.+..
T Consensus 16 lD~l~t~e~l~~~n~ed~~v~~AV~~alp~Ia-~Av~~~~~~l~~G-GRLiY~GAGTSGRLGvlDAsEcPPTfgv~~e~V 93 (298)
T COG2103 16 LDQLSTLEMLRLINDEDQKVPLAVEAALPQIA-AAVDIIAAALKQG-GRLIYIGAGTSGRLGVLDASECPPTFGVPPELV 93 (298)
T ss_pred ccccCHHHHHHHHhhhhhHHHHHHHHHhHHHH-HHHHHHHHHHHcC-CeEEEEcCCcccchhccchhhCCCCcCCChhHe
Confidence 44444444444444433344444444444443 5667777777787 59999999999966554333322 1122211
Q ss_pred --ecCCccc-----------------cccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccc
Q 019775 85 --FLNPLDA-----------------LHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAV 145 (336)
Q Consensus 85 --~~~~~~~-----------------~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ 145 (336)
++-.+.. .......++++|++|.|+.||.|+-++-.+++|+++|+.+|+|++|++++++..
T Consensus 94 iglIAGG~~A~~~avEGaED~~~~g~~dl~~~~lt~~DvvvgIaASGrTPYvigal~yAr~~Ga~Ti~iacNp~s~i~~~ 173 (298)
T COG2103 94 IGLIAGGEEAILKAVEGAEDDEELGEADLKNIGLTAKDVVVGIAASGRTPYVIGALEYARQRGATTIGIACNPGSAISRI 173 (298)
T ss_pred eeeecCCHHHHHHhhcCccccHHHHHHHHHHcCCCcCCEEEEEecCCCCchhhHHHHHHHhcCCeEEEeecCCCchhhhh
Confidence 1111110 011122489999999999999999999999999999999999999999999999
Q ss_pred cCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHHH
Q 019775 146 CDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEY 194 (336)
Q Consensus 146 ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~~ 194 (336)
+|+.|..-++.| ...+.+.+.+-++|-+++++|-...+-+.+..++.+
T Consensus 174 Ad~~I~~~vGPE-vltGSTRlKaGTAQKlvLNMlST~~Mi~lGKvy~Nl 221 (298)
T COG2103 174 ADIAIEPVVGPE-VLTGSTRLKAGTAQKLVLNMLSTGVMIKLGKVYGNL 221 (298)
T ss_pred cCcceeeccCcc-ccccccccccchHHHHHHHHHHHHHHHHhcccccce
Confidence 999999888766 344557889999999999999999998887555443
No 135
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.24 E-value=2.7e-11 Score=106.55 Aligned_cols=123 Identities=17% Similarity=0.227 Sum_probs=108.4
Q ss_pred hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC-CcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCC
Q 019775 208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE-YHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRS 286 (336)
Q Consensus 208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~-~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~ 286 (336)
.++|+|+|.|..++..++.+++.+++++.+.+..+..+|+..++ ..++|+++.+++++++.+... ..+..+.... .+
T Consensus 199 ~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~-~~k~d~~~~a-~e 276 (423)
T COG4536 199 NLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE-FTKEDILRAA-DE 276 (423)
T ss_pred cceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc-ccHhHHHHHh-cC
Confidence 78999999999998899999999999999999999999999865 469999999999999987553 3344454443 56
Q ss_pred CeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 287 PRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 287 ~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
|.+|++++++.+-+..|+++ +.+...|||+.|.+.|+||..||+..
T Consensus 277 pyFVPe~Tpl~~QL~~F~~~--k~hialVVDEYG~i~GLVTLEDIlEE 322 (423)
T COG4536 277 PYFVPEGTPLSDQLVAFQRN--KKHIALVVDEYGDIQGLVTLEDILEE 322 (423)
T ss_pred CeecCCCCcHHHHHHHHHHh--cceEEEEEeccCcEEeeeeHHHHHHH
Confidence 88999999999999999999 89999999999999999999999864
No 136
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.22 E-value=4.6e-11 Score=110.79 Aligned_cols=115 Identities=19% Similarity=0.244 Sum_probs=102.9
Q ss_pred hhhhhhccccCCCCccccCCCcHHHHHHHHHhc-----CcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhh
Q 019775 208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSK-----GCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEM 282 (336)
Q Consensus 208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~ 282 (336)
.-+++.+|.+. ++.++++.|+.+++..+++. ....++|+|+++++.|+++.++|+..- ...++.++
T Consensus 131 e~taG~~Mt~e--~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~-------~~~~i~~i 201 (451)
T COG2239 131 EDTAGRIMTTE--FVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAE-------PDELLKDL 201 (451)
T ss_pred hhhhhccceee--eEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCC-------cHhHHHHH
Confidence 44788889998 66999999999999999854 357889999999999999999988532 16889999
Q ss_pred cCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775 283 CNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS 333 (336)
Q Consensus 283 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~ 333 (336)
|.+.+..+.++++.+++.+.|+++ +.-.+||||++++++|+||..|++.
T Consensus 202 m~~~~~~V~~~~dqeevA~~~~~y--dl~a~PVVd~~~~LiG~itiDDiid 250 (451)
T COG2239 202 MEDDVVSVLADDDQEEVARLFEKY--DLLAVPVVDEDNRLIGIITIDDIID 250 (451)
T ss_pred hcccceeecccCCHHHHHHHHHHh--CCeecceECCCCceeeeeeHHHHHH
Confidence 999999999999999999999999 9999999999999999999999875
No 137
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.20 E-value=1.5e-10 Score=90.97 Aligned_cols=97 Identities=26% Similarity=0.329 Sum_probs=78.9
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCch----------hhhhHhhhc-------
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGI----------FKLTVGEMC------- 283 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~----------~~~~i~~~~------- 283 (336)
++++++++++.++++.|..++...+||+|++|+++|+++.+|++..+....... ....+.++|
T Consensus 3 ~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 82 (133)
T cd04592 3 YIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGISYG 82 (133)
T ss_pred ceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhhhc
Confidence 568999999999999999889999999998899999999999998775432210 001133444
Q ss_pred --CCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCC
Q 019775 284 --NRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQ 319 (336)
Q Consensus 284 --~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~ 319 (336)
.+++.++.+++++.++++.|.++ +.+.+||+++.
T Consensus 83 ~~~~~~~~v~~~~~l~ea~~~m~~~--~~~~lPVvd~~ 118 (133)
T cd04592 83 GQECGLWTCTPDTDLTTAKKLMEAK--GVKQLPVVKRG 118 (133)
T ss_pred ccCCCCEEECCCCCHHHHHHHHHHc--CCCcCCEecCC
Confidence 45678899999999999999999 99999999753
No 138
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.14 E-value=3.2e-10 Score=93.63 Aligned_cols=152 Identities=16% Similarity=0.246 Sum_probs=119.4
Q ss_pred HHHHHHHHHhhcCCChHHHh----hcCCCCchhhh-----------hhhhhhhccccCCCCccccCCCcHHHHHHHHHhc
Q 019775 176 GDTVAIAMMGARNLTRDEYA----ANHPAGRIGKS-----------LIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSK 240 (336)
Q Consensus 176 ~d~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~-----------~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~ 240 (336)
++.|...++.-...+++++. ..+.+.-+... ..+.|+++|.|.....+++.+.++.+++..+.+.
T Consensus 19 fe~L~~~~f~gEpknr~eLl~liRdse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iies 98 (293)
T COG4535 19 FERLLSQLFHGEPKNREELLELIRDSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLDECLDVIIES 98 (293)
T ss_pred HHHHHHHHhcCCCcCHHHHHHHHHHhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHHHHHHHHHHh
Confidence 44455555555556666643 33333333321 2568999999999888999999999999999999
Q ss_pred CcceEEEEcCC-CcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCC
Q 019775 241 GCGCLLVIDEE-YHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQ 319 (336)
Q Consensus 241 ~~~~ipVvd~~-~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~ 319 (336)
.++.+||+.++ ..+.|++..+||+.++.+... .-.+.+++ ++..+|+++-.+.-.++.|+.+ +..-.+|+|+-
T Consensus 99 aHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~---~F~i~~lL-RPav~VPESKrvd~lLkeFR~~--RnHMAIViDEf 172 (293)
T COG4535 99 AHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE---PFDIKELL-RPAVVVPESKRVDRLLKEFRSQ--RNHMAIVIDEF 172 (293)
T ss_pred ccccCCcccCCchhhhhhhhHHHHHHHhcCCcc---cccHHHhc-ccceecccchhHHHHHHHHHhh--cCceEEEEecc
Confidence 99999999855 589999999999998865322 23455554 5567899999999999999999 88899999999
Q ss_pred CcEEEEEehhhHhh
Q 019775 320 NILIGIVTLHGLVS 333 (336)
Q Consensus 320 ~~~iGiit~~di~~ 333 (336)
|.+-|+||..||+.
T Consensus 173 GgVsGLVTIEDiLE 186 (293)
T COG4535 173 GGVSGLVTIEDILE 186 (293)
T ss_pred CCeeeeEEHHHHHH
Confidence 99999999999985
No 139
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.09 E-value=3.9e-09 Score=97.73 Aligned_cols=188 Identities=14% Similarity=0.169 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHH-cCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhc-CCChH
Q 019775 115 EELLKVVPCAKA-KGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGAR-NLTRD 192 (336)
Q Consensus 115 ~~~~~~~~~ak~-~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~-~~~~~ 192 (336)
..+.+.++..++ .|..+|.+|.. ...+.++||.++.+..+.-. .. .... + +.... +.-..
T Consensus 201 ~~l~~~L~~l~~~~g~TIIivTHd-~~~~~~~~Dri~vL~~G~i~-~~--g~~~---------~-----l~~~~~~~~v~ 262 (400)
T PRK10070 201 TEMQDELVKLQAKHQRTIVFISHD-LDEAMRIGDRIAIMQNGEVV-QV--GTPD---------E-----ILNNPANDYVR 262 (400)
T ss_pred HHHHHHHHHHHHHCCCeEEEEECC-HHHHHHhCCEEEEEECCEEE-ec--CCHH---------H-----HHhCcccHHHH
Confidence 345556666544 57777777764 45667889999888655321 00 1100 0 01110 00011
Q ss_pred HHhhcCCCCchhhhhhhhhhhccccCCC-CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcC
Q 019775 193 EYAANHPAGRIGKSLIFKVQDVMKPQKE-LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASG 271 (336)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~v~~im~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~ 271 (336)
.+.... ......++.++|.+... .+...++.+..+++..|...+.+.++|+|+++++.|+++.+++......
T Consensus 263 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-- 335 (400)
T PRK10070 263 TFFRGV-----DISQVFSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQ-- 335 (400)
T ss_pred HHHhcc-----ccccccchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhc--
Confidence 122111 11112355666654321 1234567789999999999999999999999999999999999876542
Q ss_pred CchhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 272 EGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 272 ~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
...+.+.+.+...++.+++++.+++..+.+. ... +||+|++|+++|+|++.+++++
T Consensus 336 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~v~~~~~~~~g~~~~~~~~~~ 391 (400)
T PRK10070 336 ----QQGLDAALIDAPLAVDAQTPLSELLSHVGQA--PCA-VPVVDEDQQYVGIISKGMLLRA 391 (400)
T ss_pred ----CCchhhhhccCCceeCCCCCHHHHHHHHHhC--CCc-EEEECCCCcEEEEEEHHHHHHH
Confidence 2245556667778999999999999999987 555 9999999999999999999864
No 140
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.01 E-value=2.2e-08 Score=91.73 Aligned_cols=103 Identities=19% Similarity=0.289 Sum_probs=88.7
Q ss_pred cccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHHHH
Q 019775 223 VCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQK 302 (336)
Q Consensus 223 ~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~ 302 (336)
...++.+..++...+...+.+..+|+|+++++.|.++.+++...... ...+.+.+.+....+.+++++.+++..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (363)
T TIGR01186 254 TKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKK------AQGLQDVLIDDIYTVDAGTLLRETVRK 327 (363)
T ss_pred eecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhc------CCchhhhhccCCceECCCCcHHHHHHH
Confidence 45667789999999999999999999999999999999999876653 234666666777889999999999999
Q ss_pred hcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 303 MESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 303 ~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
|.++ +.. +||+|++|+++|+|++.+++++
T Consensus 328 ~~~~--~~~-~~v~~~~~~~~g~i~~~~~~~~ 356 (363)
T TIGR01186 328 VLKA--GIK-VPVVDEDQRLVGIVTRGSLVDA 356 (363)
T ss_pred HHhC--CCC-EEEECCCCcEEEEEEHHHHHHH
Confidence 9998 666 9999999999999999999864
No 141
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.99 E-value=1.9e-09 Score=71.41 Aligned_cols=56 Identities=29% Similarity=0.433 Sum_probs=51.9
Q ss_pred hhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHH
Q 019775 211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK 268 (336)
Q Consensus 211 v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~ 268 (336)
|+++|.++ ++++++++++.++++.|.+++++++||+|++|+++|+++.+||++.+.
T Consensus 1 v~~~m~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPP--PITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSS--SEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred CeECCcCC--CEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 57899986 669999999999999999999999999999999999999999998764
No 142
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.90 E-value=2.5e-09 Score=70.79 Aligned_cols=54 Identities=31% Similarity=0.568 Sum_probs=50.7
Q ss_pred HhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 279 VGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 279 i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
+.++|.+++..+.+++++.++++.|.++ +.+.+||+|++|+++|+||..||+++
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~--~~~~~~V~d~~~~~~G~is~~dl~~~ 54 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKN--GISRLPVVDEDGKLVGIISRSDLLKA 54 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHH--TSSEEEEESTTSBEEEEEEHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHc--CCcEEEEEecCCEEEEEEEHHHHHhh
Confidence 4678999999999999999999999999 99999999999999999999999874
No 143
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.85 E-value=6.9e-09 Score=96.92 Aligned_cols=123 Identities=20% Similarity=0.163 Sum_probs=104.5
Q ss_pred hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC-----CcEEEEeeHHHHHHHHHhcCC----------
Q 019775 208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE-----YHLIGTFTDGDLRRTLKASGE---------- 272 (336)
Q Consensus 208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~-----~~~~G~it~~dl~~~~~~~~~---------- 272 (336)
.++++++|.++ +++++....++.+++.+++.++..+||+|+. +++.|+|-+++|...+..+..
T Consensus 581 ~L~a~ev~~~p--vi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~ 658 (762)
T KOG0474|consen 581 NLTAGEVMSKP--VICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDL 658 (762)
T ss_pred hhhHhhhccCC--eEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCc
Confidence 56899999995 7799999999999999999999999999943 478999999999876643210
Q ss_pred ---------------------------chhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEE
Q 019775 273 ---------------------------GIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGI 325 (336)
Q Consensus 273 ---------------------------~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGi 325 (336)
......+..+|++.|.+|.+++++..+...|+.- +++++.|+++.+..+|+
T Consensus 659 ~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~l--GLRhLlVv~~~~~~~gi 736 (762)
T KOG0474|consen 659 PVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQL--GLRHLLVVPKTNRVVGI 736 (762)
T ss_pred chhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHh--cceeEEEecCCCceeEE
Confidence 0011355568899999999999999999999999 99999999998889999
Q ss_pred EehhhHhhc
Q 019775 326 VTLHGLVSA 334 (336)
Q Consensus 326 it~~di~~~ 334 (336)
+|++|+.+.
T Consensus 737 lTR~D~~~~ 745 (762)
T KOG0474|consen 737 LTRKDLARY 745 (762)
T ss_pred EehhhhhhH
Confidence 999999753
No 144
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.84 E-value=6.8e-09 Score=92.35 Aligned_cols=104 Identities=17% Similarity=0.221 Sum_probs=93.8
Q ss_pred cccCCCcHHHHHHHHHhcCcceEEEEcCC---CcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHH
Q 019775 223 VCKEGDLIMDQLVELTSKGCGCLLVIDEE---YHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEA 299 (336)
Q Consensus 223 ~~~~~~~v~~~~~~~~~~~~~~ipVvd~~---~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~ 299 (336)
++.|+.++.++++....++++.+||.++. ++++|+||.+|+..... ....+.++|.+.+...+.+.++.++
T Consensus 120 v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~~~------~~~~~~~vmt~~~~~~~~gi~l~~~ 193 (503)
T KOG2550|consen 120 VISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFLED------NSLLVSDVMTKNPVTGAQGITLKEA 193 (503)
T ss_pred ccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhhhc------ccchhhhhcccccccccccccHHHH
Confidence 78999999999999999999999999733 58999999999876521 2578899999999999999999999
Q ss_pred HHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 300 MQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 300 ~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
-+.+++. +...+||+|++|+++.+|++.||.++
T Consensus 194 neiL~~~--kkGkl~iv~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 194 NEILKKI--KKGKLPVVDDKGELVAMLSRTDLMKN 226 (503)
T ss_pred HHHHHhh--hcCCcceeccCCceeeeeehhhhhhh
Confidence 9999999 89999999999999999999999875
No 145
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.84 E-value=3e-08 Score=91.09 Aligned_cols=112 Identities=19% Similarity=0.315 Sum_probs=94.2
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhh-Hhhhc------CCCCeeeCCC
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLT-VGEMC------NRSPRTIGPD 293 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~-i~~~~------~~~~~~v~~~ 293 (336)
+..+..+.++.++++.|...+++.+||++..|+.+|.++..|+.....+......+.. +.... ..+..++.++
T Consensus 239 i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc~~~ 318 (381)
T KOG1764|consen 239 IASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTCRPT 318 (381)
T ss_pred heeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEEeec
Confidence 6688999999999999999999999999999988999999999998766443333333 32221 2234789999
Q ss_pred ccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 294 AMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 294 ~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
.++..+++.|..+ +++++.|+|++|.++|+||..|++..
T Consensus 319 ssL~~vi~~lv~~--~vHRl~VVd~~~~l~GvvSLsDil~~ 357 (381)
T KOG1764|consen 319 STLAEVIDKLVAH--RVHRLWVVDEDGVLVGVISLSDILSY 357 (381)
T ss_pred chHHHHHHHHHhc--CceEEEEEcCCCcEEEEeeHHHHHHH
Confidence 9999999999999 99999999999999999999999864
No 146
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=98.76 E-value=2.8e-07 Score=91.12 Aligned_cols=144 Identities=15% Similarity=0.130 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEEEEEeCCCCc-HHHH
Q 019775 41 PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNT-EELL 118 (336)
Q Consensus 41 ~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~-~~~~ 118 (336)
+.++++++.+.++ +++|++|.|.++.+|.+.+.+|.++ .+++..++..+..+.....++++..+|++...+.+ ..+.
T Consensus 514 ~~~~~~a~~l~~~-~~~~~lGrG~~y~~A~EgALKlkE~syi~ae~y~~~EfkHGP~alid~~~pVi~l~~~~~~~e~~~ 592 (670)
T PTZ00394 514 DPVKALAARLKES-SSILVLGRGYDLATAMEAALKVKELSYVHTEGIHSGELKHGPLALIDETSPVLAMCTHDKHFGLSK 592 (670)
T ss_pred HHHHHHHHHhhCC-CcEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcCChhhccCCcHHHhcCCceEEEEEcCCchHHHHH
Confidence 5678888888888 6999999999999999999999987 77777777788888888889999888888876665 5688
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHH
Q 019775 119 KVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDE 193 (336)
Q Consensus 119 ~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~ 193 (336)
++++.++++|+++++||+.....+...++.++.+|...+ ..+.+.....+.+|...++..++.++++
T Consensus 593 ~~~~evk~~g~~vi~I~~~~~~~~~~~~~~~i~vp~~~~--------~l~pll~~iplQllAy~~A~~rG~dpD~ 659 (670)
T PTZ00394 593 SAVQQVKARGGAVVVFATEVDAELKAAASEIVLVPKTVD--------CLQCVVNVIPFQLLAYYMALLRGNNVDC 659 (670)
T ss_pred HHHHHHHHcCCeEEEEECCCcchhcccCCcEEECCCCch--------hHhHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 899999999999999998654455566778888886432 2233445566788888899888877655
No 147
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=98.66 E-value=1e-06 Score=83.82 Aligned_cols=158 Identities=15% Similarity=0.176 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCC
Q 019775 23 LFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSS 101 (336)
Q Consensus 23 ~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~ 101 (336)
-++...+.++++.. ..+.+.++++.+.++ +++|++|.|..+++|.+.+.+|..+ .+++.-+..++..+..+..+++
T Consensus 427 ~L~~lp~~i~~~l~--~~~~i~~~a~~l~~~-~~~~~lGRG~~ypvAlEgALKlKEIsYIHAEgy~aGElKHGpiALid~ 503 (597)
T COG0449 427 ELQKLPNHIPKVLA--AEEKIKELAKRLADA-KDFFFLGRGVLYPVALEGALKLKEISYIHAEGYAAGELKHGPIALIDE 503 (597)
T ss_pred HHHHHHHHHHHHHh--cCHHHHHHHHHhccc-CCEEEEcCCCCcHhHhhhhhhhhhheeeccccccchhhccCceEEEcC
Confidence 34555566666665 447899999998888 6999999999999999999999988 7777777778888999999999
Q ss_pred CcEEEEEeCCCC-cHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHH
Q 019775 102 DDILVMFSKSGN-TEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVA 180 (336)
Q Consensus 102 ~dlvi~iS~sG~-~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~ 180 (336)
+..+|++.-.+. ...+...++..+.||++++.|++... .....|..+..|...+ ..+.+....-+++|.
T Consensus 504 ~~pVi~i~p~~~~~ek~~sni~Ev~aRg~~~i~i~~~~~--~~~~~~~~i~~p~~~e--------~laPi~~~iPlQLLA 573 (597)
T COG0449 504 NTPVIAIAPKPDLFEKTKSNIQEVRARGGKIIVIADEGD--VAEDGDDLILLPEVDE--------LLAPLLYTIPLQLLA 573 (597)
T ss_pred CCcEEEEeCcchHHHHHHHHHHHHHcCCCeEEEEecCCc--ccccCceEEecCCCcc--------hhhhHHHHHHHHHHH
Confidence 999999999995 68899999999999999999998766 5566788888777654 123334445578888
Q ss_pred HHHHhhcCCChHH
Q 019775 181 IAMMGARNLTRDE 193 (336)
Q Consensus 181 ~~~~~~~~~~~~~ 193 (336)
+.++..++.+.++
T Consensus 574 Y~iA~~kG~dvD~ 586 (597)
T COG0449 574 YHIALAKGIDVDK 586 (597)
T ss_pred HHHHHHcCCCCCC
Confidence 8888888876654
No 148
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=98.63 E-value=1.5e-06 Score=85.78 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=119.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEE
Q 019775 27 QQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDIL 105 (336)
Q Consensus 27 ~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlv 105 (336)
..+.+++..+. .+.+++.++.+.+. +++|++|.|..+.+|.+.+.+|.++ .+++..+...+..+.....++++..+
T Consensus 439 l~~~~~~~~~~--~~~~~~~a~~l~~~-~~~~~lG~G~~~g~A~E~aLKl~E~~~~~a~~~~~~Ef~HGP~~~i~~~~~v 515 (607)
T TIGR01135 439 LPALVEQVLKL--EESIAELAERYADK-HNFLFLGRGLGYPIALEGALKLKEISYIHAEGYPAGELKHGPIALIDEGLPV 515 (607)
T ss_pred HHHHHHHHHhC--cHHHHHHHHHhhCC-CcEEEEeCCCCHHHHHHHHHHHHHHHHHhccccchhhhccCcHhhhCCCCCE
Confidence 33444444443 25678888888888 5999999999999999999999988 67888787788888888889999999
Q ss_pred EEEeCCCCc-HHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 019775 106 VMFSKSGNT-EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMM 184 (336)
Q Consensus 106 i~iS~sG~~-~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~ 184 (336)
|++...+.. ..+.++++.++++|+++++|++.........+|..+.+|...+ ..+.+.....+++|...+.
T Consensus 516 i~l~~~~~~~~~~~~~~~~~~~~g~~v~~I~~~~~~~~~~~~~~~i~~p~~~~--------~l~pl~~~~p~Qlla~~~A 587 (607)
T TIGR01135 516 VAIAPKDSLFEKTKSNVEEVKARGARVIVFADEDDEFLESVADDVIKLPEVEE--------LLAPIVYTVPLQLLAYHIA 587 (607)
T ss_pred EEEEeCchHHHHHHHHHHHHHHcCCeEEEEECCCcccccccCCcEEECCCCCc--------cchHHHHHHHHHHHHHHHH
Confidence 999877764 6678899999999999999998643222345677787775422 2234455777899999999
Q ss_pred hhcCCChHH
Q 019775 185 GARNLTRDE 193 (336)
Q Consensus 185 ~~~~~~~~~ 193 (336)
..++.+++.
T Consensus 588 ~~~G~dpd~ 596 (607)
T TIGR01135 588 LAKGTDVDK 596 (607)
T ss_pred HHcCCCCCC
Confidence 998877655
No 149
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=98.60 E-value=2.7e-06 Score=83.94 Aligned_cols=155 Identities=16% Similarity=0.154 Sum_probs=118.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEE
Q 019775 27 QQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDIL 105 (336)
Q Consensus 27 ~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlv 105 (336)
..+.+....+. .+.++++++.+... +++|++|.|.++.+|.+.+.+|.++ .+++..+...+..+.....++++..+
T Consensus 437 l~~~~~~~~~~--~~~~~~~a~~~~~~-~~~~~lG~G~~~~~A~E~aLKl~E~~~i~a~~~~~~Ef~HGP~~~i~~~~~v 513 (604)
T PRK00331 437 LPALIEQVLDL--KEQIEELAEDFADA-RNALFLGRGVDYPVALEGALKLKEISYIHAEGYAAGELKHGPIALIDEGMPV 513 (604)
T ss_pred HHHHHHHHHhC--hHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHHHHHHHHhhhcccccchhhhccCcHhhhcCCceE
Confidence 33444444443 35678888888888 5999999999999999999999988 77888887788888888888999999
Q ss_pred EEEeCCCCc-HHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 019775 106 VMFSKSGNT-EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMM 184 (336)
Q Consensus 106 i~iS~sG~~-~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~ 184 (336)
|++...+.. ..+.+.++..+++|+++++||+... .....+|..+.+|...+ ..+.+.....++++...+.
T Consensus 514 i~l~~~~~~~~~~~~~~~~~~~~g~~v~~I~~~~~-~~~~~~~~~~~~~~~~~--------~~~pl~~~ip~Qlla~~~A 584 (604)
T PRK00331 514 VAIAPNDELYEKTKSNIQEVKARGARVIVIADEGD-EVAEEADDVIEVPEVHE--------LLAPLLYVVPLQLLAYHVA 584 (604)
T ss_pred EEEEcCchHHHHHHHHHHHHHhCCCEEEEEEcCCc-cccccCCceEECCCCcc--------chhHHHHHHHHHHHHHHHH
Confidence 988877764 4567889999999999999997543 33455677777775322 2234444567889999999
Q ss_pred hhcCCChHH
Q 019775 185 GARNLTRDE 193 (336)
Q Consensus 185 ~~~~~~~~~ 193 (336)
..++.+++.
T Consensus 585 ~~~G~~pd~ 593 (604)
T PRK00331 585 LARGTDVDK 593 (604)
T ss_pred HHcCCCCCC
Confidence 998877655
No 150
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=98.50 E-value=6.2e-06 Score=65.67 Aligned_cols=158 Identities=16% Similarity=0.210 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHcC---CCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCC
Q 019775 23 LFKSQQDHLNYFFQHLSLPHTLTFTQTLLKC---RGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGIL 99 (336)
Q Consensus 23 ~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a---~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 99 (336)
++..++.-+-+-...-.++.|+..++++.+| .++||++|+|-=..+..+..+.=..+..-..+..+.. ....+
T Consensus 4 IftTQL~Gif~rI~ekee~~iedaARlLAQA~vgeG~IYi~G~~Em~~v~~~Al~g~E~l~~~k~l~~~~~----~~~~l 79 (172)
T PF10740_consen 4 IFTTQLTGIFKRISEKEEESIEDAARLLAQAIVGEGTIYIYGFGEMEAVEAEALYGAEPLPSAKRLSEDLE----NFDEL 79 (172)
T ss_dssp HHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHTT--EEEEE-GGGGGGHHHHHCSTT--TTEEE--TT-----------
T ss_pred HHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHhcCCEEEEEecChHHHHHHHHHcCCCCCchhhcCccccc----ccccc
Confidence 3444444443333333567899999998766 2699999998755443332211111111111111111 12347
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEe--CCCCCccccccCEEEEcCCCcccCCC---CCCChhHHHHHHH
Q 019775 100 SSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVT--SVEGNALAAVCDMNVHLPVERELCPF---DLAPVTSTAIQMV 174 (336)
Q Consensus 100 ~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT--~~~~s~l~~~ad~~i~~~~~~~~~~~---~~~~~~s~~~~~~ 174 (336)
++-|=|++||..-+.++.++.++.+.++|+++++|+ ......+.++||+.|......+..|. ....+.+.++.+|
T Consensus 80 t~~DRVllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs~~~~~~~~l~~~~~~~Idl~~~~~LvP~EdG~Rig~P~~~a~ly 159 (172)
T PF10740_consen 80 TETDRVLLFSPFSTDEEAVALAKQLIEQGIPFVGVSPNKPDEEDLEDLADVHIDLKLPKPLVPTEDGDRIGFPHLMAALY 159 (172)
T ss_dssp -TT-EEEEEES-S--HHHHHHHHHHHHHT--EEEEE-SS---TTGGG-SSS-EE----S-SEE-TTS-EE---HHHHHHH
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEEecCCCCCchhhhhhheeecccCCCcccCCCCCEecchHHHHHHH
Confidence 788999999999999999999999999999999999 33455788889999987766543322 2234566677777
Q ss_pred HHHHHHHHHH
Q 019775 175 FGDTVAIAMM 184 (336)
Q Consensus 175 l~d~l~~~~~ 184 (336)
+...|+..+.
T Consensus 160 iYy~l~~~~~ 169 (172)
T PF10740_consen 160 IYYALYFTLD 169 (172)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777666553
No 151
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=98.43 E-value=1e-05 Score=80.44 Aligned_cols=154 Identities=11% Similarity=0.100 Sum_probs=115.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEEEE
Q 019775 29 DHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDILVM 107 (336)
Q Consensus 29 ~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlvi~ 107 (336)
+.+++..+. .+.++++++.+.++ +++|++|.|..+.+|.+.+.+|.++ .+++..+...+..+.....++++..+|+
T Consensus 512 ~~l~~vl~~--~~~~~~~a~~l~~~-~~~~~lG~G~~yg~A~EgALKlkE~s~i~a~gy~~~Ef~HGP~ali~~~t~vi~ 588 (680)
T PLN02981 512 NKVREVLKL--DQEMKELAELLIDE-QSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDETLPIIV 588 (680)
T ss_pred HHHHHHHhc--cHHHHHHHHHhhCC-CcEEEEeCCCCHHHHHHHHHHHHHHHHhhhccEEhhhcccChHHhccCCceEEE
Confidence 344444442 25688888888888 5999999999999999999999987 6777777777888888888999999888
Q ss_pred EeCCCC-cHHHHHHHHHHHHcCCeEEEEeCCCCCcc--ccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 019775 108 FSKSGN-TEELLKVVPCAKAKGAYLVSVTSVEGNAL--AAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMM 184 (336)
Q Consensus 108 iS~sG~-~~~~~~~~~~ak~~g~~vi~IT~~~~s~l--~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~ 184 (336)
+...+. .....++++.++++|+++++|++...... ....|..+.+|...+ ..+.+.....+++|...+.
T Consensus 589 l~~~~~~~~~~~~~~~el~~~g~~vi~I~~~~~~~~~~~~~~~~~i~~p~~~~--------~l~pll~iiplQllAy~~A 660 (680)
T PLN02981 589 IATRDACFSKQQSVIQQLRARKGRLIVICSKGDASSVCPSGGCRVIEVPQVED--------CLQPVINIVPLQLLAYHLT 660 (680)
T ss_pred EEcCCchHHHHHHHHHHHHHcCCEEEEEEcCCcchhccccCCCeEEEEeccch--------HHhHHHHHHHHHHHHHHHH
Confidence 876665 46688999999999999999998643211 123466676765322 2233444566788888888
Q ss_pred hhcCCChHH
Q 019775 185 GARNLTRDE 193 (336)
Q Consensus 185 ~~~~~~~~~ 193 (336)
..++.+++.
T Consensus 661 ~~~G~dpD~ 669 (680)
T PLN02981 661 VLRGHNVDQ 669 (680)
T ss_pred HHhCCCCCC
Confidence 888876654
No 152
>cd05010 SIS_AgaS_like AgaS-like protein. AgaS contains a SIS (Sugar ISomerase) domain which is found in many phosphosugar isomerases and phosphosugar binding proteins. AgaS is a putative isomerase in Escherichia coli. It is similar to the glucosamine-6-phosphate synthases (GlmS) which catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source.
Probab=98.41 E-value=5.6e-06 Score=66.30 Aligned_cols=129 Identities=15% Similarity=0.212 Sum_probs=94.1
Q ss_pred EEEEeccchHHHHHHHHHHHHhcC---CeeeecCCccccccccCCCCCCcEEEEEeCCCCcHH--HHHHHHHHHHc--CC
Q 019775 57 IFFTGVGKSGFVANKISQTLISLG---IKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEE--LLKVVPCAKAK--GA 129 (336)
Q Consensus 57 I~i~G~G~s~~~a~~~~~~l~~~g---~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~--~~~~~~~ak~~--g~ 129 (336)
|+++|.|.++.+|.+.+.+|+++- .++...+..+..+.....++++..+|++...+.+.+ ..++++..+++ |+
T Consensus 1 ~~~lGrG~~y~~A~E~ALKlkE~s~~~~~ae~~s~~Ef~HGP~alv~~~~~vi~l~~~d~~~~~~~~~~~~ei~~~~~g~ 80 (151)
T cd05010 1 VVYLGSGPLAGLAREAALKVLELTAGKVATVYDSPLGFRHGPKSLVDDDTLVVVFVSNDPYTRQYDLDLLKELRRDGIAA 80 (151)
T ss_pred CEEEecCCcHHHHHHHHHHHHHHhccchhhccccccccccCcHHHccCCceEEEEEcCCchHHHHHHHHHHHHHhccCCC
Confidence 689999999999999999999973 477777778888888888999999999987777643 56889999998 89
Q ss_pred eEEEEeCCCCCccccccCEEEE-cCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHH
Q 019775 130 YLVSVTSVEGNALAAVCDMNVH-LPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDE 193 (336)
Q Consensus 130 ~vi~IT~~~~s~l~~~ad~~i~-~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~ 193 (336)
++++|+..........+++.+. .+.. ....+.+.....+.++...++..++.+++.
T Consensus 81 ~vi~i~~~~~~~~~~~~~~~l~~~~~~--------~~~l~p~~~iip~Qlla~~~A~~~G~dpD~ 137 (151)
T cd05010 81 RVIAISPESDAGIEDNSHYYLPGSRDL--------DDVYLAFPYILYAQLFALFNSIALGLTPDN 137 (151)
T ss_pred eEEEEEcCCccccccccceeecccCCc--------ccHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 9999987532222223343222 2222 222344455666788888888888877654
No 153
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=98.34 E-value=1.9e-05 Score=72.25 Aligned_cols=132 Identities=11% Similarity=0.118 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHcCCCeEEEEeccchHHHH-HHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEEEEEeCCCCc-HHH
Q 019775 41 PHTLTFTQTLLKCRGTIFFTGVGKSGFVA-NKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNT-EEL 117 (336)
Q Consensus 41 ~~i~~~~~~i~~a~~~I~i~G~G~s~~~a-~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~-~~~ 117 (336)
+..+++++.+... +++|++|.|.++..| .+.+.+|.++ .+++..++..+..+.....++++..+|++..+|.+ ...
T Consensus 196 ~~~~~~a~~~~~~-~~~~~lG~G~~y~~A~~E~alKl~E~~~i~a~~~~~~Ef~HGP~~li~~~~~vi~l~~~~~~~~~~ 274 (340)
T PRK11382 196 EKGRQLGELASQW-PMIYTVAAGPLRPLGYKEGIVTLMEFTWTHGCVIESGEFRHGPLEIVEPGVPFLFLLGNDESRHTT 274 (340)
T ss_pred HHHHHHHHHhcCC-CcEEEEeCCCCHHHHHHHHHHHHHHHhhhhcccccHHHhccChHHHhcCCceEEEEEcCcchHHHH
Confidence 4456666766677 599999999999997 8989999986 78888888888888888889999988888878866 468
Q ss_pred HHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHH
Q 019775 118 LKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDE 193 (336)
Q Consensus 118 ~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~ 193 (336)
.++++.++++|.++++|+... ++. ......+.+.....++++...+...++.++++
T Consensus 275 ~~~~~~l~~~~~~v~~I~~~~-------------~~~-------~~~~~l~pl~~~ip~Qlla~~lA~~rG~d~d~ 330 (340)
T PRK11382 275 ERAINFVKQRTDNVIVIDYAE-------------ISQ-------GLHPWLAPFLMFVPMEWLCYYLSIYKDHNPDE 330 (340)
T ss_pred HHHHHHHHHCCCeEEEEECCC-------------CCC-------CcchhHhHHHHHHHHHHHHHHHHHHhCcCCCC
Confidence 889999999999999997531 111 11223344455566788999999988877655
No 154
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.34 E-value=9.2e-07 Score=74.46 Aligned_cols=61 Identities=26% Similarity=0.342 Sum_probs=56.6
Q ss_pred hhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHH
Q 019775 206 SLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK 268 (336)
Q Consensus 206 ~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~ 268 (336)
.+..+|+++|+++ +++++.|..+.||+++|.++++..+.|+|.+|+++|+||+.|++..+.
T Consensus 231 ~~~~kV~~~M~k~--vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 231 NLDAKVSDYMRKN--VITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred CccccHHHHhccC--CceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 3567999999998 669999999999999999999999999999999999999999998764
No 155
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.30 E-value=8.9e-07 Score=83.89 Aligned_cols=96 Identities=13% Similarity=0.102 Sum_probs=78.3
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCee
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRT 289 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~ 289 (336)
+++++|++. ++++++++++.++.+.|.+++...+||+|++|+++|+||.+|+...+..+ ...++|......
T Consensus 196 ~v~~im~~~--~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~-------~~ed~~~~~gv~ 266 (449)
T TIGR00400 196 ILSSIMRSS--VFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSE-------ATEDFYMIAAVK 266 (449)
T ss_pred cHHHHhCCC--CeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhh-------hHHHHHHhcCCC
Confidence 588999986 45899999999999999999999999999999999999999999988652 235565555444
Q ss_pred eCCCccHHHHHHHhcCCCCCccEeEEE
Q 019775 290 IGPDAMAVEAMQKMESPPSPVQFLPVI 316 (336)
Q Consensus 290 v~~~~~l~~~~~~~~~~~~~~~~l~Vv 316 (336)
..+++.+.+++..+.++ +...++|.
T Consensus 267 ~~~~~~l~~~~~~~~~~--R~~wL~v~ 291 (449)
T TIGR00400 267 PLDDSYFDTSILVMAKN--RIIWLLVL 291 (449)
T ss_pred CCcchhhhchHHHHHHh--ccchHHHH
Confidence 44567788888888888 78888774
No 156
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.27 E-value=6.1e-06 Score=77.77 Aligned_cols=125 Identities=14% Similarity=0.139 Sum_probs=95.5
Q ss_pred hhhhhhhccccCCCCccccC-CCcHHHHHHHHHhcCcceEEEEcC--CCcEEEEeeHHHHHHHHHhcC------------
Q 019775 207 LIFKVQDVMKPQKELPVCKE-GDLIMDQLVELTSKGCGCLLVIDE--EYHLIGTFTDGDLRRTLKASG------------ 271 (336)
Q Consensus 207 ~~~~v~~im~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~ipVvd~--~~~~~G~it~~dl~~~~~~~~------------ 271 (336)
..+.+-+.++.++.+.+++. .++++|...++.+..++.+||+=+ ..+++|++.++++...+....
T Consensus 544 ~~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~ 623 (696)
T KOG0475|consen 544 LAIPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIY 623 (696)
T ss_pred hhhhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccc
Confidence 33344344444434555544 589999999999999999997653 358999999999998765211
Q ss_pred ----------CchhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 272 ----------EGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 272 ----------~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
..+....+.++|+..|.++...++.+-++++|++- +...+.|..+ |++.|+||++|++++
T Consensus 624 f~~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~l--g~~~~~v~~~-G~l~Giitkkd~l~~ 693 (696)
T KOG0475|consen 624 FNDPSPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKL--GLRQILVTKN-GILLGIITKKDCLRH 693 (696)
T ss_pred cCCCCccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhh--CceEEEEccC-CeeEeeeehHHHHHh
Confidence 01223467778888999999999999999999998 8888877655 999999999999975
No 157
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.25 E-value=1.8e-06 Score=65.31 Aligned_cols=54 Identities=26% Similarity=0.327 Sum_probs=48.6
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
++.++|... ++++++++++.+++++|.+++.+.+||+|++|+++|+||.+|+.+
T Consensus 57 ~v~~~~~~~--~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 57 KVCEVYIVP--VPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred ChhheeecC--CcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 477888766 458999999999999999999999999998899999999999875
No 158
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=98.25 E-value=3.4e-05 Score=69.77 Aligned_cols=136 Identities=16% Similarity=0.183 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHH-HH
Q 019775 41 PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEE-LL 118 (336)
Q Consensus 41 ~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~-~~ 118 (336)
+..++++....+. ++||+.|.|..+.+|.+.+.+|..+ ++++..+.+++..+.....++++-+||++-..+++++ ..
T Consensus 189 ~~~~~~~~~~~~~-~~i~~lGsG~~~g~A~e~aLkl~E~~~~~s~a~~s~E~~HGp~elv~~~~pvi~~~~~d~tr~~~~ 267 (340)
T COG2222 189 EDAQEFAEEYADE-DRIYTLGSGPLYGAAYEAALKLKEMQWIHSEAISSGEFRHGPKELVEEGTPVLLFVSEDETRELDE 267 (340)
T ss_pred HHHHHHHHHhcCC-CEEEEECCcccHHHHHHHHHHHHHHccccceeeeccccccCcHHHcCCCceEEEEecCCcchhHHH
Confidence 3444566666777 6999999999999999999999887 8999999999999999999999999999988888866 56
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCCh
Q 019775 119 KVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTR 191 (336)
Q Consensus 119 ~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~ 191 (336)
++++.++++|+++++|-... .++. .+.. .....+...+..+..++.+...+...++.++
T Consensus 268 r~~~~~~~~ga~v~vi~a~~-------~~~~--~~~~-----~~~~~l~~~~~~~~v~~~~~~~~a~~rg~~p 326 (340)
T COG2222 268 RALKFLKNYGAKVLVIDAKD-------AALD--LIDQ-----RVRHDLAPPLLSLVVAQRLAYALAVARGHNP 326 (340)
T ss_pred HHHHHHHhcCCeEEEEcCcc-------cccC--CCCc-----cccchhHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 77899999999999998754 1111 1111 1124455556666777777777777766544
No 159
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=98.24 E-value=9.1e-06 Score=75.58 Aligned_cols=112 Identities=15% Similarity=0.163 Sum_probs=79.5
Q ss_pred HHHHHHHHH---cCCCeEEEEeccchHHHHHHHHHHHHhc---CCeeeecC--CccccccccCC-CCCCcEEEEEeCCCC
Q 019775 43 TLTFTQTLL---KCRGTIFFTGVGKSGFVANKISQTLISL---GIKSGFLN--PLDALHGDIGI-LSSDDILVMFSKSGN 113 (336)
Q Consensus 43 i~~~~~~i~---~a~~~I~i~G~G~s~~~a~~~~~~l~~~---g~~~~~~~--~~~~~~~~~~~-~~~~dlvi~iS~sG~ 113 (336)
++++.+.+. +- +.|+++|.|.|+.-++.+.+.|... +.+++++. +...+...... ..++.++|++|.||.
T Consensus 45 i~e~~~~i~~~~~~-~~VV~iGIGGS~LG~~~l~~al~~~~~~~~~i~f~~n~dp~~~~~~l~~~~~~~TlviviSKSGt 123 (410)
T PRK03868 45 IEESLKFVKDKESI-KNIVVIGIGGSSLGVKAIYSFLKNEKNNKKELHFLENTDPISINKTLSKINLENTLFIVISKSGT 123 (410)
T ss_pred HHHHHHHHHhhCCC-CEEEEEecChHHHHHHHHHHHHHhhccCCCcEEEEecCCHHHHHHHHhcCCCCcEEEEEEeCCCC
Confidence 555554553 45 5999999999998888887777532 45566555 44444444443 347789999999999
Q ss_pred cHHHHHHHHHHHHcC------C-eEEEEeCCCCCccccccC----EEEEcCCCc
Q 019775 114 TEELLKVVPCAKAKG------A-YLVSVTSVEGNALAAVCD----MNVHLPVER 156 (336)
Q Consensus 114 ~~~~~~~~~~ak~~g------~-~vi~IT~~~~s~l~~~ad----~~i~~~~~~ 156 (336)
|.|++.+.+.+++++ + ++++||+ .++++.++|+ -++.+|..-
T Consensus 124 T~ETl~~~~~~~~~~~~~~~~~~~~v~vTd-~~s~L~~~a~~~g~~~f~ip~~V 176 (410)
T PRK03868 124 TIETISIFKYLLSHFKLDQELKKNFLFITD-PDSKLEQFAKENNIKCFNIPKNV 176 (410)
T ss_pred CHHHHHHHHHHHHHhccccccccEEEEEec-CCchHHHhHHhcCCcEEecCCCC
Confidence 999999999998873 3 4667776 5778988886 456665543
No 160
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.22 E-value=4.3e-06 Score=63.64 Aligned_cols=56 Identities=21% Similarity=0.235 Sum_probs=50.7
Q ss_pred hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
..+++++|.+. ++++++++++.++++.|.+.+...+||+|++|+++|+++.++|..
T Consensus 57 ~~~v~dim~~~--~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 57 HPRVRDVINRK--PVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhhHHHhcCCC--CCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 46899999886 558999999999999999999999999998899999999999864
No 161
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.15 E-value=5.4e-06 Score=63.04 Aligned_cols=55 Identities=31% Similarity=0.455 Sum_probs=51.0
Q ss_pred hhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775 277 LTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS 333 (336)
Q Consensus 277 ~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~ 333 (336)
.++.++|.+++..+.+++++.++++.|.+. +...+||+|++|+++|+|+..||.+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~--~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEH--NIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHc--CCCEEEEECCCCeEEEEEEHHHhhc
Confidence 679999988899999999999999999988 8899999998899999999999865
No 162
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.11 E-value=6.7e-07 Score=87.11 Aligned_cols=120 Identities=15% Similarity=0.160 Sum_probs=89.3
Q ss_pred hhhhccc-cCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcC---------C-------
Q 019775 210 KVQDVMK-PQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASG---------E------- 272 (336)
Q Consensus 210 ~v~~im~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~---------~------- 272 (336)
+|+++|. ++ ++++++++++.++.+.|.+++++.+||+|++|+++|+++.+|+......+. .
T Consensus 247 ~V~~iM~~~~--~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~~~~~ 324 (546)
T PRK14869 247 PVSYIMTTED--LVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVILVDHNEKSQAVEGIEE 324 (546)
T ss_pred CHHHhccCCC--cEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEEEcCccccccccchhh
Confidence 6899998 55 568999999999999999999999999999999999999999998543200 0
Q ss_pred -----chhhhhHhhhcCCCCeee---CCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 273 -----GIFKLTVGEMCNRSPRTI---GPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 273 -----~~~~~~i~~~~~~~~~~v---~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
...+.++.+++.+.|+.+ +...+...+.+.|.+. +....|++.. ..+.|+++-.+.++.
T Consensus 325 ~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~--~i~~~~~ia~-~ll~gIlsDT~~f~~ 391 (546)
T PRK14869 325 AEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYREN--GIEPSPEIAG-LLLAAILSDTLLFKS 391 (546)
T ss_pred ceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHc--CCCCCHHHHH-HHHHHHHHHhcCccC
Confidence 001223455666666544 3356777888888888 7777777755 567888877766543
No 163
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=98.10 E-value=2e-05 Score=73.85 Aligned_cols=113 Identities=19% Similarity=0.224 Sum_probs=79.0
Q ss_pred HHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-----------CCeeeecCC--ccccccccCCCC-CCcEEEE
Q 019775 42 HTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-----------GIKSGFLNP--LDALHGDIGILS-SDDILVM 107 (336)
Q Consensus 42 ~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-----------g~~~~~~~~--~~~~~~~~~~~~-~~dlvi~ 107 (336)
.++++.+.+.+. +.|.++|.|.|+.-++.+...|... +..+++.++ ...+...+..++ ++.++++
T Consensus 60 ~~~~~~~~~~~~-~~vVviGIGGS~LG~~al~~al~~~~~~~~~~~~~~~~~l~~~~n~dp~~~~~~l~~l~~~~Tl~iv 138 (446)
T PRK00973 60 SYEELKEWSKNF-DNVVVLGIGGSALGNLALHYALNPLNWNELSKEERNGPRVFVLDNVDPEKTASILDVIDLEKTLFNV 138 (446)
T ss_pred HHHHHHHHhhcC-CEEEEEcCCchhHHHHHHHHHHhhhccccccccccCCceEEEeCCCCHHHHHHHHHhCCcccEEEEE
Confidence 555555544445 5999999999998777777666532 234555553 333444444455 5678999
Q ss_pred EeCCCCcHHHHHHHHHHHH--------cCCeEEEEeCCCCCccccccC----EEEEcCCC
Q 019775 108 FSKSGNTEELLKVVPCAKA--------KGAYLVSVTSVEGNALAAVCD----MNVHLPVE 155 (336)
Q Consensus 108 iS~sG~~~~~~~~~~~ak~--------~g~~vi~IT~~~~s~l~~~ad----~~i~~~~~ 155 (336)
+|.||.|.|+....+.+++ .+.++|+||+...++|.++|+ -++.+|.+
T Consensus 139 iSKSGtT~ET~~~f~~~~~~l~~~g~~~~~~~vaiTd~~~g~L~~~A~~~g~~~f~ip~~ 198 (446)
T PRK00973 139 ISKSGNTAETLANYLIIRGILEKLGLDPKKHLVFTTDPEKGKLKKIAEKEGYRTLEIPEN 198 (446)
T ss_pred EeCCCCCHHHHHHHHHHHHHHHhcCccccceEEEEcCCCccchHHHHHHcCCcEEeeCCC
Confidence 9999999999998887765 456899999977777877776 34555554
No 164
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.07 E-value=7.8e-06 Score=62.06 Aligned_cols=55 Identities=25% Similarity=0.453 Sum_probs=48.7
Q ss_pred hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
.+++++|... .+++.+++++.++++.|.+++...+||+|++|+++|+|+.+|+..
T Consensus 59 ~~v~~~~~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 59 APVENVMTRA--VVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred CCHHHHhcCC--CeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 3567788776 458999999999999999999999999998899999999999864
No 165
>TIGR02815 agaS_fam putative sugar isomerase, AgaS family. Some members of this protein family are found in regions associated with N-acetyl-galactosamine and galactosamine untilization and are suggested to be isomerases.
Probab=98.04 E-value=0.00023 Score=65.85 Aligned_cols=144 Identities=17% Similarity=0.184 Sum_probs=99.5
Q ss_pred HHHHHHHHHH--cCCCeEEEEeccchHHHHHHHHHHHHhcC-Cee--eecCCccccccccCCCCCCcEEEEEeCCCCc-H
Q 019775 42 HTLTFTQTLL--KCRGTIFFTGVGKSGFVANKISQTLISLG-IKS--GFLNPLDALHGDIGILSSDDILVMFSKSGNT-E 115 (336)
Q Consensus 42 ~i~~~~~~i~--~a~~~I~i~G~G~s~~~a~~~~~~l~~~g-~~~--~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~-~ 115 (336)
++....+.+. +. +++|++|.|..+.+|.+.+.+|.++- ..+ ......+..+.....++++..+|++...+.. +
T Consensus 201 ~~~~~~~~~~~~~~-~~~~~lGrG~~y~~A~E~ALKlkE~~~~~~~~~~~~~~Ef~HGP~alv~~~~~vi~l~~~d~~~~ 279 (372)
T TIGR02815 201 QWDFSEGVLGYAPW-ERIVYLGSGGLQGLARESALKVLELTAGKVMAFYDSSLGFRHGPKSLVDDETLVVVYVSSDPYTR 279 (372)
T ss_pred HHHHHHHHHhhcCC-CeEEEEeCCCChHHHHHHHHHHHHHHHHHHheeeccccccccChHHHhcCCCeEEEEEcCchhhh
Confidence 5566666653 66 69999999999999999999999986 343 3344567788888889999999999877763 2
Q ss_pred -HHHHHHHHHHHcC--CeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChH
Q 019775 116 -ELLKVVPCAKAKG--AYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRD 192 (336)
Q Consensus 116 -~~~~~~~~ak~~g--~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~ 192 (336)
...++++..+++| .+++.|++.. ... ...+..+.+|.... . ....+.+.....+.+|...+...+|.+++
T Consensus 280 ~~~~~~l~e~~~~g~~~~v~~I~~~~-~~~-~~~~~~i~i~~~~~---~--~~~~~~~~~vip~QllA~~~A~~~G~dpD 352 (372)
T TIGR02815 280 QYDLDLLAELRRDNQAGRVVAISAES-SDI-VAAGDHFILPPSRH---F--IDVELAFPYLIFAQTLAFEQSLALGNTPD 352 (372)
T ss_pred hhhHHHHHHHHhcCCCceEEEEEcCC-ccc-ccCCCEEEeCCCCC---C--chHHhHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 2257899999985 9999999752 111 12244566654311 0 11112333455578888888888887765
Q ss_pred H
Q 019775 193 E 193 (336)
Q Consensus 193 ~ 193 (336)
.
T Consensus 353 ~ 353 (372)
T TIGR02815 353 N 353 (372)
T ss_pred C
Confidence 4
No 166
>PRK14096 pgi glucose-6-phosphate isomerase; Provisional
Probab=98.03 E-value=4.4e-05 Score=72.60 Aligned_cols=113 Identities=21% Similarity=0.309 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHc----------CCCeEEEEeccchHHHHHHHHHHHHhc--CCeeeecC--CccccccccCCCC---CCc
Q 019775 41 PHTLTFTQTLLK----------CRGTIFFTGVGKSGFVANKISQTLISL--GIKSGFLN--PLDALHGDIGILS---SDD 103 (336)
Q Consensus 41 ~~i~~~~~~i~~----------a~~~I~i~G~G~s~~~a~~~~~~l~~~--g~~~~~~~--~~~~~~~~~~~~~---~~d 103 (336)
+.++++++.+.+ . +.|.++|.|.|+.=.+.+...|... +.+++++. +...+...+..++ ++.
T Consensus 92 ~~i~~fa~~i~~G~~~~~~g~~~-~~vV~IGIGGS~LGp~~v~~AL~~~~~~~~~~f~dN~Dp~~~~~~l~~l~~~~~~T 170 (528)
T PRK14096 92 AQIEAFAAKVHSGTIKPPNGEKF-TDVLWIGIGGSALGPQFVAEALQPNSDGLNIHFIDNTDPDGIDRVLAELGDRLATT 170 (528)
T ss_pred HHHHHHHHHHHcCCccCCCCCCC-CeEEEECCCcchHHHHHHHHHHhhcCCCCcEEEEcCCCHHHHHHHHHHhcCCCCcE
Confidence 456677777764 4 5899999999998777777777643 34566665 4444555555554 678
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHH----cC----CeEEEEeCCCCCcccccc---C--EEEEcCCC
Q 019775 104 ILVMFSKSGNTEELLKVVPCAKA----KG----AYLVSVTSVEGNALAAVC---D--MNVHLPVE 155 (336)
Q Consensus 104 lvi~iS~sG~~~~~~~~~~~ak~----~g----~~vi~IT~~~~s~l~~~a---d--~~i~~~~~ 155 (336)
++|++|.||.|.|+...++.+++ +| .++|+||+ .++++.++| + -+|.++..
T Consensus 171 LviViSKSGtT~ET~~n~~~~~~~l~~~G~~~~~h~VAVT~-~~s~L~~~A~~~g~~~~F~~~d~ 234 (528)
T PRK14096 171 LVVVISKSGGTPETRNGMLEAKAAYEAAGLDFASHAVAITM-KGSKLDQLAQSEGWLARFPMWDW 234 (528)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHhhcccccceEEEEEC-CCcHHhhhccccCceeEeeCCCC
Confidence 99999999999999988875443 34 57999998 688899988 3 35665554
No 167
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=98.03 E-value=1.7e-05 Score=80.27 Aligned_cols=106 Identities=19% Similarity=0.204 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHcCC-CeEEEEeccchHHHHHHHHHHHHhc-CCee-eecC--CccccccccCCCC-CCcEEEEEeCCCCc
Q 019775 41 PHTLTFTQTLLKCR-GTIFFTGVGKSGFVANKISQTLISL-GIKS-GFLN--PLDALHGDIGILS-SDDILVMFSKSGNT 114 (336)
Q Consensus 41 ~~i~~~~~~i~~a~-~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~-~~~~--~~~~~~~~~~~~~-~~dlvi~iS~sG~~ 114 (336)
++++++++.+...+ ++|+++|+|.|+.-.+.+.+.|... +.+. +++. +...+...+..++ ++.++|++|.||.|
T Consensus 441 ~~i~~fa~~Ir~~~~d~VVviGIGGS~LG~~~l~~~l~~~~~~p~l~~ldn~DP~~v~~~l~~~~~e~TLvIViSKSGtT 520 (948)
T PRK09533 441 AEYEAFAEEVRAEGFTDAVVLGMGGSSLGPEVLAETFGQRDGFPKLHVLDSTDPAQVRALEAAVDLARTLFIVSSKSGGT 520 (948)
T ss_pred HHHHHHHHHHhcCCCCEEEEEccChhHHHHHHHHHHHHhcCCCceEEEEeCCChHHHHHHHhhCCcccEEEEEEeCCCCC
Confidence 46777888886422 6999999999998888777766533 3333 3333 2222222222232 56789999999999
Q ss_pred HHHHHHHHHHH---------HcCCeEEEEeCCCCCccccccC
Q 019775 115 EELLKVVPCAK---------AKGAYLVSVTSVEGNALAAVCD 147 (336)
Q Consensus 115 ~~~~~~~~~ak---------~~g~~vi~IT~~~~s~l~~~ad 147 (336)
.|+..+.+.++ +.|.++|+||+ +++++.++|+
T Consensus 521 ~ET~sa~~~~~~~l~~~~g~~~~~~~VaVTd-pgs~L~~~A~ 561 (948)
T PRK09533 521 LEPNIFKDYFFARVKEVLGAKAGRHFVAVTD-PGSSLEKVAK 561 (948)
T ss_pred HHHHHHHHHHHHHhhhhcccccCCeEEEEeC-CCChHHHHHH
Confidence 99999988776 34778999999 5889988864
No 168
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.00 E-value=7.7e-06 Score=70.31 Aligned_cols=98 Identities=24% Similarity=0.331 Sum_probs=71.4
Q ss_pred cccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcC-----CchhhhhHhhhcCCCCeeeCCCccHH
Q 019775 223 VCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASG-----EGIFKLTVGEMCNRSPRTIGPDAMAV 297 (336)
Q Consensus 223 ~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~-----~~~~~~~i~~~~~~~~~~v~~~~~l~ 297 (336)
...-+-+-+|+.+.+.+.+- .+| |+++||...+.+-. .+.......++|.++..+++.++++.
T Consensus 198 ~~rvgfs~~Dld~aL~~~~E----~lD--------IdrddLe~llr~~elqa~~R~~~~LtcadIMSrdVvtv~~~ts~d 265 (382)
T COG3448 198 SQRVGFSSEDLDAALQRLGE----TLD--------IDRDDLERLLRETELQALRRRMGELTCADIMSRDVVTVSTDTSID 265 (382)
T ss_pred hhccCCCHHHHHHHHHhcCc----eec--------CCHHHHHHHHHHHHHHHHHHHhccccHHHhcCccceecCCcCChH
Confidence 33445556677666665431 112 34555554443211 11114578899999999999999999
Q ss_pred HHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 298 EAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 298 ~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
++.+.|.++ +...+||+|++.+++|+|+..|+++.
T Consensus 266 hA~~ll~~H--~ikaLPV~d~~~rl~GiVt~~dl~~~ 300 (382)
T COG3448 266 HARKLLQEH--RIKALPVLDEHRRLVGIVTQRDLLKH 300 (382)
T ss_pred HHHHHHHHc--CcccccccccccceeeeeeHHHHhhc
Confidence 999999999 99999999999999999999999873
No 169
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.94 E-value=1.8e-05 Score=59.75 Aligned_cols=54 Identities=26% Similarity=0.279 Sum_probs=47.9
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
++.++|.+. ++++++++++.++++.|.+++.+.+||++++|+++|+|+.+|+..
T Consensus 59 ~v~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 59 PVSEVMNRN--PITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred CHHHhhcCC--CEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 466788776 458999999999999999999999999998899999999999864
No 170
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.92 E-value=1.6e-05 Score=60.68 Aligned_cols=56 Identities=14% Similarity=0.299 Sum_probs=47.5
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC---CcEEEEeeHHHHHH
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE---YHLIGTFTDGDLRR 265 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~---~~~~G~it~~dl~~ 265 (336)
+++++|.....++++++++++.+++++|.+++...+||+|++ |+++|+||.+++..
T Consensus 59 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 59 PVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred CHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 566788752225699999999999999999999999999976 69999999998763
No 171
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.91 E-value=1.4e-05 Score=60.44 Aligned_cols=56 Identities=29% Similarity=0.420 Sum_probs=47.8
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
++.++|.+...++++.+++++.++++.|.+++.+.+||++++|+++|+++.+++..
T Consensus 58 ~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 58 TVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred chhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 46677875433458899999999999999999999999998789999999998753
No 172
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.90 E-value=1.8e-05 Score=61.88 Aligned_cols=57 Identities=21% Similarity=0.380 Sum_probs=52.7
Q ss_pred hhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhcC
Q 019775 276 KLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAG 335 (336)
Q Consensus 276 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~~ 335 (336)
...+..+|+.+.+++.+++++.++.++|++. +...+||+++ ++++|-||.++|.+..
T Consensus 64 ~ita~~iM~spvv~v~pdDsi~~vv~lM~~~--g~SQlPVi~~-~k~VGsItE~~iv~~~ 120 (187)
T COG3620 64 RITAKTIMHSPVVSVSPDDSISDVVNLMRDK--GISQLPVIEE-DKVVGSITENDIVRAL 120 (187)
T ss_pred eEeHhhhccCCeeEECchhhHHHHHHHHHHc--CCccCceeeC-CeeeeeecHHHHHHHH
Confidence 4567889999999999999999999999999 9999999999 9999999999998763
No 173
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.89 E-value=3.2e-05 Score=59.49 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=45.7
Q ss_pred hhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 212 QDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 212 ~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
.++|... +.+++++.++.++++.|.+++.+.+||+|++|+++|+||.+|++.
T Consensus 71 ~~~~~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~~ 122 (123)
T cd04627 71 LTIGTSD--VISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVRL 122 (123)
T ss_pred cccCcCC--ceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhhc
Confidence 4566555 568999999999999999999999999998899999999999863
No 174
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.88 E-value=2e-05 Score=58.26 Aligned_cols=45 Identities=18% Similarity=0.087 Sum_probs=41.5
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCC-CcEEEEeeHHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEE-YHLIGTFTDGDLRR 265 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~-~~~~G~it~~dl~~ 265 (336)
++++.+++++.++++.|.+++.+.+||+|++ |+++|++|.+|++.
T Consensus 52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 3489999999999999999999999999987 89999999999864
No 175
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.87 E-value=2.8e-05 Score=58.89 Aligned_cols=54 Identities=24% Similarity=0.340 Sum_probs=46.5
Q ss_pred hhhhccccCCCCccccCC--CcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 210 KVQDVMKPQKELPVCKEG--DLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
++.++|.+. +++++++ .++.++++.|.+++...+||+|++|+++|++|.+++.+
T Consensus 59 ~i~~~~~~~--~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 59 PIGEVMTQP--VVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred CHHHhcCCC--cEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 566788765 4577776 78999999999999999999998899999999999874
No 176
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.87 E-value=3e-05 Score=59.53 Aligned_cols=55 Identities=27% Similarity=0.385 Sum_probs=48.9
Q ss_pred hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
.++.++|... ++++++++++.++++.|.+.+.+.+||+|++|+++|+++..|+..
T Consensus 69 ~~i~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 69 ETVGDIMSPP--VVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred ccHHHhccCC--CeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 3577888776 558999999999999999999999999998899999999999874
No 177
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.86 E-value=3.4e-05 Score=57.87 Aligned_cols=56 Identities=23% Similarity=0.202 Sum_probs=49.3
Q ss_pred hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHH
Q 019775 209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRT 266 (336)
Q Consensus 209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~ 266 (336)
.+++++|.+. .+.+.++.++.++++.|.+.+...+||++++|+++|+++..++...
T Consensus 53 ~~v~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 53 TPVSDIMDTD--VISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred chHHHHhCCC--CeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 3577888776 4589999999999999999999999999988999999999999864
No 178
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=97.84 E-value=0.0001 Score=68.03 Aligned_cols=111 Identities=16% Similarity=0.237 Sum_probs=91.5
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEc-CCCcEEEEeeHHHHHHHHHhcCCch-----hhhhHhhhc---CCCCeeeC
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVID-EEYHLIGTFTDGDLRRTLKASGEGI-----FKLTVGEMC---NRSPRTIG 291 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd-~~~~~~G~it~~dl~~~~~~~~~~~-----~~~~i~~~~---~~~~~~v~ 291 (336)
+..+.+..++.++...+.++++..+||.| +.+.+.+++|...+++++....... ...++.++- -.....+.
T Consensus 164 ~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i~ 243 (381)
T KOG1764|consen 164 FVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIASIS 243 (381)
T ss_pred ceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhhhheeec
Confidence 36889999999999999999999999999 5579999999999999887644322 122333321 12357799
Q ss_pred CCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775 292 PDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS 333 (336)
Q Consensus 292 ~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~ 333 (336)
.++++.++++.|... +...+||++..|+.+|.+++.|+..
T Consensus 244 ~~~~v~~al~~m~~~--~is~lpvV~~~g~~v~~~s~~Dv~~ 283 (381)
T KOG1764|consen 244 EDTPVIEALKIMSER--RISALPVVDENGKKVGNYSRFDVIH 283 (381)
T ss_pred CCCcHHHHHHHHHhc--CcCcceEEcCCCceecceehhhhhh
Confidence 999999999999999 9999999999999999999999865
No 179
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.83 E-value=3.2e-05 Score=59.82 Aligned_cols=57 Identities=30% Similarity=0.470 Sum_probs=46.5
Q ss_pred hhhhhccccCCCCccc----cCCCcHHHHHHHHHhcCcceEEEEcCC-CcEEEEeeHHHHHH
Q 019775 209 FKVQDVMKPQKELPVC----KEGDLIMDQLVELTSKGCGCLLVIDEE-YHLIGTFTDGDLRR 265 (336)
Q Consensus 209 ~~v~~im~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~ipVvd~~-~~~~G~it~~dl~~ 265 (336)
.+++++|.+....+.+ .+++++.++++.|.+++.+.+||+|++ |+++|+||.+|+..
T Consensus 64 ~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 64 LTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred eEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 4577889765432233 368899999999999999999999986 79999999999875
No 180
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.82 E-value=0.00011 Score=67.93 Aligned_cols=176 Identities=10% Similarity=0.095 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHH-cCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCC-ChH
Q 019775 115 EELLKVVPCAKA-KGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNL-TRD 192 (336)
Q Consensus 115 ~~~~~~~~~ak~-~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~-~~~ 192 (336)
.++.+.+...++ .|..+|.||.. ...+.++||.++.+..+.-. .. ... + .+...... -..
T Consensus 201 ~~l~~~L~~l~~~~~~TII~iTHd-l~e~~~l~DrI~vl~~G~iv-~~--g~~----------~----ei~~~p~~~~~~ 262 (382)
T TIGR03415 201 TQLQDELLELQAKLNKTIIFVSHD-LDEALKIGNRIAIMEGGRII-QH--GTP----------E----EIVLNPANDYVA 262 (382)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEE-Ee--cCH----------H----HHhhCcchHHHH
Confidence 345666655554 47777777764 55667899999888665331 00 110 0 01111000 011
Q ss_pred HHhhcCCCCchhhhhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCC
Q 019775 193 EYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGE 272 (336)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~ 272 (336)
.+.. .......++++++|.+... ....+ .. .++.. ++.+.++|+|+ |+++..+.........
T Consensus 263 ~~~~-----~~~~~~~l~a~~~m~~~~~--~~~~~-~~-~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~- 324 (382)
T TIGR03415 263 DFVA-----HTNPLNVLTARSLMRPLTD--LEHVD-GG-WCVSD---RRDTWLFTIDK-----QVRRRDAKLPVQAWAA- 324 (382)
T ss_pred HHhc-----ccCcccceeHHHHhccccc--ccccC-cc-hhhhh---cccceeEeecc-----ceecccchHhHhhccc-
Confidence 1211 1122334588899966432 22222 22 33333 67888999985 8888877665433211
Q ss_pred chhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 273 GIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 273 ~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
...+.+ +......+++++++.+++..+.+. ...++|+|+ |+++|+|++.+++.+
T Consensus 325 ---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~-~~~~g~~~~~~~~~~ 378 (382)
T TIGR03415 325 ---EQEVES-LEAAPTVINPDTLMRDVLAARHRT---GGAILLVEN-GRIVGVIGDDNIYHA 378 (382)
T ss_pred ---ccchhh-hcccCcccCCCCcHHHHHHHHhcC---CCCeEEeeC-CeEEEEEeHHHHHHH
Confidence 223555 455567899999999999998876 346889987 999999999999875
No 181
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.82 E-value=4.6e-05 Score=57.46 Aligned_cols=54 Identities=24% Similarity=0.274 Sum_probs=48.2
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
++.++|.+. ++++++++++.++++.|.+.+...+||++++++++|+|+..||..
T Consensus 60 ~v~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 60 PVADVMTRN--PKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred CHHHhhccC--CeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 577888876 458999999999999999999999999998899999999999864
No 182
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.82 E-value=4.7e-05 Score=56.71 Aligned_cols=54 Identities=31% Similarity=0.414 Sum_probs=47.9
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
+++++|.+. .+++.+++++.++++.|.+++...+||++++|+++|+++..+++.
T Consensus 53 ~~~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 53 TVEEIMSKD--LVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred cHHHhCCCC--CeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 577888766 458999999999999999999999999998899999999999864
No 183
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.81 E-value=4.7e-05 Score=57.03 Aligned_cols=54 Identities=17% Similarity=0.258 Sum_probs=48.2
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
+++++|.+. +++++++.++.++.+.|.+++...+||++++|+++|+++..++..
T Consensus 54 ~v~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 54 TIEKVMTKN--PITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred cHHHHhcCC--CeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 577888766 458999999999999999999999999998899999999999864
No 184
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.80 E-value=5.3e-05 Score=56.91 Aligned_cols=54 Identities=20% Similarity=0.299 Sum_probs=47.6
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
++.++|... ++.++++.++.++++.|.+++...+||++++|+++|+++.+|+..
T Consensus 57 ~v~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 57 PVRGVMRRD--FPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred cHHHHhcCC--CcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 466788765 568999999999999999999999999997799999999999864
No 185
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.80 E-value=4.4e-05 Score=57.81 Aligned_cols=54 Identities=20% Similarity=0.357 Sum_probs=46.4
Q ss_pred hhhhccccCCCCccc--cCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 210 KVQDVMKPQKELPVC--KEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 210 ~v~~im~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
+++++|.+... .+ +++.++.++++.|.+++...+||++++|+++|+||.+++..
T Consensus 58 ~v~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 58 PLSEVMTPREV--LVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred CHHHhcCCCce--EEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 46788887644 55 44999999999999999999999998899999999999864
No 186
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.79 E-value=5e-05 Score=56.76 Aligned_cols=54 Identities=22% Similarity=0.310 Sum_probs=47.6
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
++.++|.+. +++++++.++.++++.|.+++...+||++++|+++|+++.+++..
T Consensus 55 ~v~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 55 SLEDIMLED--VFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred cHhHhhcCC--ceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 356778765 458999999999999999999999999998899999999999864
No 187
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.79 E-value=4.2e-05 Score=73.01 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=53.3
Q ss_pred hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHH
Q 019775 209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTL 267 (336)
Q Consensus 209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~ 267 (336)
.+|+++|.+.+.+++++++.++.+++++|.+++.+.+||+|++++++|+||.+|++...
T Consensus 161 ~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 161 TKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred CCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 46889999754567899999999999999999999999999889999999999999854
No 188
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.79 E-value=5.3e-05 Score=57.77 Aligned_cols=55 Identities=24% Similarity=0.332 Sum_probs=48.7
Q ss_pred hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
.++.++|.+. ++++++++++.+++..|.+.+.+.+||++++|+++|+||..|+..
T Consensus 67 ~~~~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 67 IKVSDIMTRD--PITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred cCHHHhccCC--CeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 3567788775 558999999999999999999999999998799999999999875
No 189
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.79 E-value=5e-05 Score=57.49 Aligned_cols=54 Identities=17% Similarity=0.091 Sum_probs=47.8
Q ss_pred hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
.++.++|... ++++++++++.++++.|.+.+...+||+|+ |+++|+|+..|+..
T Consensus 60 ~~v~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 60 VNVYEIMTKP--LISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred cCHHHHhcCC--CeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 3677888765 569999999999999999999999999986 99999999999874
No 190
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.78 E-value=5.2e-05 Score=57.99 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=45.1
Q ss_pred hhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 212 QDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 212 ~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
..+|..+ ++++++++++.++++.|.+++.+.+||+|++|+++|+||.+|++.
T Consensus 68 ~~~~~~~--~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 68 RSQDFEG--VRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred cccCCCC--CeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 3445444 458999999999999999999999999998899999999999874
No 191
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.77 E-value=6e-05 Score=72.19 Aligned_cols=114 Identities=21% Similarity=0.233 Sum_probs=78.1
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCC-ch--hhhhHhhhcCCC
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGE-GI--FKLTVGEMCNRS 286 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~-~~--~~~~i~~~~~~~ 286 (336)
+++++|.+. .+++++++.++.++++.|.+++.+.+||+|++|+++|+||.+||+..+..... .. .+..+...|..
T Consensus 148 ~V~dim~~~-~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~- 225 (486)
T PRK05567 148 PVSEVMTKE-RLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGV- 225 (486)
T ss_pred cHHHHcCCC-CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeeccc-
Confidence 577888732 25689999999999999999999999999999999999999999987643110 00 01122333322
Q ss_pred CeeeCCCccHHHHHHHhcCCCCCccEeEEEeC-CCcEEEEEehhhHhhc
Q 019775 287 PRTIGPDAMAVEAMQKMESPPSPVQFLPVINR-QNILIGIVTLHGLVSA 334 (336)
Q Consensus 287 ~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~-~~~~iGiit~~di~~~ 334 (336)
.+ .+ .+..+.|.+. +.+. +|+|. +|+..|+++.-+.++.
T Consensus 226 ----~~-~~-~e~a~~L~~a--gvdv-ivvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 226 ----GA-DN-EERAEALVEA--GVDV-LVVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred ----Cc-ch-HHHHHHHHHh--CCCE-EEEECCCCcchhHHHHHHHHHh
Confidence 22 22 5556666666 6775 46664 5777777776665553
No 192
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.77 E-value=6.1e-05 Score=56.05 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=46.6
Q ss_pred hhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 211 v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
+.++|.+. .+++.+++++.++++.|.+++...+||+|++|+++|+++.+++.+
T Consensus 53 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 53 CGDHAEPF--KVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred hhhhcccC--CEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 56777765 347899999999999999999999999998899999999999864
No 193
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.77 E-value=7.6e-05 Score=46.38 Aligned_cols=47 Identities=28% Similarity=0.366 Sum_probs=41.9
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTL 267 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~ 267 (336)
++++.++.++.++.+.|.+.+...+||++++++++|+++..++...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 34788999999999999999999999999888999999999987653
No 194
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.75 E-value=6.1e-05 Score=56.78 Aligned_cols=54 Identities=24% Similarity=0.325 Sum_probs=47.5
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
++.++|.+. ++++++++++.++++.|.+.+...+||++++|+++|+++..++..
T Consensus 59 ~i~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 59 KVREVMNSP--VITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred cHHHhccCC--ceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 466778765 458999999999999999999999999998899999999999864
No 195
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=97.75 E-value=7.3e-05 Score=56.05 Aligned_cols=54 Identities=24% Similarity=0.378 Sum_probs=47.5
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
+++++|.+. ++.+++++++.++++.|.+.+...+||+|++|+++|+++.+++.+
T Consensus 57 ~v~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 57 PVGEVMSSP--LLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred CHHHhcCCC--ceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 567788765 558999999999999999999999999998899999999999864
No 196
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.75 E-value=5e-05 Score=57.22 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=47.9
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
++.++|.+. .+++++++++.++++.|.+++...+||++++++++|+|+..|++.
T Consensus 59 ~v~~i~~~~--~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 59 LVERVMTPN--PVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred CHHHhcCCC--CeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 577888776 458999999999999999999999999998899999999999864
No 197
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.74 E-value=6.4e-05 Score=56.54 Aligned_cols=53 Identities=23% Similarity=0.291 Sum_probs=47.1
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
++.++|.+. ++++++++++.++++.|.+++...+||++ +|+++|++|.+++..
T Consensus 59 ~v~~~~~~~--~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 59 TVRAIMNPE--PIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred CHHHHhCCC--CeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 577888776 45899999999999999999999999998 589999999999864
No 198
>PRK14095 pgi glucose-6-phosphate isomerase; Provisional
Probab=97.74 E-value=0.00068 Score=64.75 Aligned_cols=106 Identities=20% Similarity=0.264 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHc----------CCCeEEEEeccchHHHHHHHHHHHH---hcCCeeeecC--CccccccccCCCC-CCcE
Q 019775 41 PHTLTFTQTLLK----------CRGTIFFTGVGKSGFVANKISQTLI---SLGIKSGFLN--PLDALHGDIGILS-SDDI 104 (336)
Q Consensus 41 ~~i~~~~~~i~~----------a~~~I~i~G~G~s~~~a~~~~~~l~---~~g~~~~~~~--~~~~~~~~~~~~~-~~dl 104 (336)
+.+.++++.+.+ - +.|+++|.|.|+.=...+...|. ..+.+++++. +...+...+..++ ++.+
T Consensus 129 ~~~~~f~~~vr~g~~~g~tg~~~-~~VV~IGIGGS~LGp~av~~AL~~~~~~~~~l~fvsNvDp~~~~e~L~~ldpe~TL 207 (533)
T PRK14095 129 ERLAEFLKKVRSGEIKNSNGKKF-TTVVQIGIGGSDLGPKALYLALKNYAKKDKRVHFISNVDPDDAAEVLSEIDLAKTL 207 (533)
T ss_pred HHHHHHHHHHHcCCccCCCCCcc-ceEEEEecCcchHhHHHHHHHHHhhccCCceEEEECCCCHHHHHHHHhcCCcccEE
Confidence 466777777764 3 58999999999833333333222 2344666655 3444444444343 4678
Q ss_pred EEEEeCCCCcHHHHHH----HHHHHHcC----CeEEEEeCCCCCccccccCE
Q 019775 105 LVMFSKSGNTEELLKV----VPCAKAKG----AYLVSVTSVEGNALAAVCDM 148 (336)
Q Consensus 105 vi~iS~sG~~~~~~~~----~~~ak~~g----~~vi~IT~~~~s~l~~~ad~ 148 (336)
+|++|.||.|.|+... .+.+++.| ..+|+||+ ..+++++..++
T Consensus 208 fiviSKSGtT~ETl~n~~~~r~wl~~~G~~~~~h~VaVT~-~~s~l~~~~~~ 258 (533)
T PRK14095 208 FIVVSKSGTTLETAANEEFVRDALKKAGLDYKKHFIAVTS-EGSPMDDESGY 258 (533)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHcCccccceEEEEEC-CchHHHhhcCc
Confidence 9999999999999998 44555556 58999998 57778776666
No 199
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.73 E-value=7.1e-05 Score=46.52 Aligned_cols=46 Identities=30% Similarity=0.528 Sum_probs=41.2
Q ss_pred CeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 287 PRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 287 ~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
+..+.+++++.++++.|.+. +...+||++++++++|+++..++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLEEALELLREH--GIRRLPVVDEEGRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHHHHHHHHHHh--CCCcccEECCCCeEEEEEEHHHHHHh
Confidence 46788999999999999988 89999999988899999999998764
No 200
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.70 E-value=8.1e-05 Score=56.93 Aligned_cols=55 Identities=20% Similarity=0.288 Sum_probs=48.3
Q ss_pred hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
.++.++|.+. ++++++++++.++++.|.+++.+.+||++++|+++|+++..|+..
T Consensus 67 ~~~~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 67 PTVEKIMSTP--VYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred CcHHHHhcCC--CeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 3567788765 458999999999999999999999999998899999999999864
No 201
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.70 E-value=0.00018 Score=68.29 Aligned_cols=58 Identities=22% Similarity=0.222 Sum_probs=52.7
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA 269 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~ 269 (336)
+++++|.+. +++++++.++.+++++|.+++...+||+|++++++|+||.+||......
T Consensus 149 ~V~diMt~~--~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~ 206 (479)
T PRK07807 149 QVRDVMSTD--LVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIY 206 (479)
T ss_pred CHHHhccCC--ceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 578899876 5699999999999999999999999999988999999999999987654
No 202
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.70 E-value=7.9e-05 Score=54.71 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=41.5
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
++++++++++.+++++|.+++.+.+||++++|+++|+++.+++..
T Consensus 51 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 51 VVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred cEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 458999999999999999999999999998789999999999864
No 203
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.70 E-value=8.6e-05 Score=57.04 Aligned_cols=55 Identities=27% Similarity=0.364 Sum_probs=48.5
Q ss_pred hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
.++.++|.+. ++++++++++.++++.|.+.+.+.+||++++|+++|+|+..|+..
T Consensus 70 ~~~~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 70 EPVRSIMTRN--VITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred cCHHHHhcCC--ceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 3577788765 569999999999999999999999999997789999999999874
No 204
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.69 E-value=9.1e-05 Score=56.08 Aligned_cols=53 Identities=23% Similarity=0.353 Sum_probs=46.9
Q ss_pred hhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC--CcEEEEeeHHHHHH
Q 019775 211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE--YHLIGTFTDGDLRR 265 (336)
Q Consensus 211 v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~--~~~~G~it~~dl~~ 265 (336)
++++|... ++++.+++++.+++++|.+++...+||+|++ |+++|+|+.+++..
T Consensus 60 ~~~~~~~~--~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 60 VDEVATPP--LLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred HHHhccCC--ceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 56777765 5589999999999999999999999999977 79999999999864
No 205
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.69 E-value=0.00026 Score=67.25 Aligned_cols=58 Identities=17% Similarity=0.141 Sum_probs=52.7
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA 269 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~ 269 (336)
+++++|.++ +++++++.++.+++++|.+++...+||+|++|+++|+||.+||.+....
T Consensus 147 ~V~dIMt~~--litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 147 QVRDIMSTD--LVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIY 204 (475)
T ss_pred CHHHHccCC--ceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhC
Confidence 578999876 5699999999999999999999999999988999999999999986654
No 206
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.69 E-value=9.3e-05 Score=56.60 Aligned_cols=56 Identities=25% Similarity=0.396 Sum_probs=49.0
Q ss_pred hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
..++.++|... ++++++++++.++++.|.+.+...+||++++|+++|+++..|+..
T Consensus 66 ~~~v~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 66 DVPVAEVMKTD--VLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred CcCHHHhhCCC--CeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 34677888776 458999999999999999999999999998789999999999874
No 207
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=97.68 E-value=8.9e-05 Score=55.67 Aligned_cols=53 Identities=23% Similarity=0.280 Sum_probs=45.4
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
.+.++|.+ ++.+.+++++.+++++|.+++.+.+||++++|+++|++|.+|+..
T Consensus 58 ~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 58 DLRDLLRP---PLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred CHHHHhcC---CeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 34455543 458999999999999999999999999998899999999999863
No 208
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.68 E-value=0.00011 Score=57.80 Aligned_cols=55 Identities=20% Similarity=0.328 Sum_probs=48.6
Q ss_pred hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
..+++++|.+. ++.+.+++++.++++.|.+.+...+||+++ |+++|+|+..++..
T Consensus 80 ~~~v~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 80 PLVAEDIMTEE--IITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred cccHHHhcCCC--CeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 44788999876 458999999999999999999999999986 89999999999874
No 209
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=97.67 E-value=0.0001 Score=55.17 Aligned_cols=54 Identities=30% Similarity=0.460 Sum_probs=47.2
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
++.++|.+. ++.++++.++.++++.|.+.+...+||++++|+++|+++..|+..
T Consensus 56 ~v~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 56 KVKDVMTKD--VITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred CHHHHhcCC--ceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 566777765 558999999999999999999999999998899999999999863
No 210
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.67 E-value=9.1e-05 Score=54.94 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=45.7
Q ss_pred hhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHH
Q 019775 211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLR 264 (336)
Q Consensus 211 v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~ 264 (336)
+.++|.+. .+++++++++.++++.|.+++...+||+++ |+++|++|..++.
T Consensus 53 ~~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 53 VADAMTRE--VVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred HHHHccCC--CEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 56778776 458999999999999999999999999996 9999999999986
No 211
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.67 E-value=0.0001 Score=70.57 Aligned_cols=62 Identities=21% Similarity=0.252 Sum_probs=55.7
Q ss_pred hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775 208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA 269 (336)
Q Consensus 208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~ 269 (336)
..+|+++|.+...+++++++.++.++++.|.+++...+||+|++++++|+||++|+.+.+..
T Consensus 162 ~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 162 ETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred CCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 34788999987556799999999999999999999999999988999999999999988753
No 212
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.66 E-value=0.00012 Score=56.10 Aligned_cols=56 Identities=23% Similarity=0.268 Sum_probs=49.6
Q ss_pred hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
..++.++|... ++.+++++++.++++.|.+++...+||++++++++|+++..++..
T Consensus 66 ~~~~~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 66 NRRAHQIMTRD--PITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred HhHHHHhhcCC--CeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 34678888776 568999999999999999999999999998899999999999875
No 213
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.66 E-value=8.8e-05 Score=55.74 Aligned_cols=54 Identities=20% Similarity=0.330 Sum_probs=47.4
Q ss_pred hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
.++.++|.+. +++++++.++.++++.|.+.+...+||+++ |+++|+|+.+++..
T Consensus 59 ~~~~~~~~~~--~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 59 TPVSEIMTRN--VITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred cCHHHhcCCC--cEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 3577888775 558999999999999999999999999986 89999999999864
No 214
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.65 E-value=0.00012 Score=55.07 Aligned_cols=54 Identities=28% Similarity=0.362 Sum_probs=47.8
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
++.++|... ++++++++++.++++.|.+.+...+||++++|+++|+++..++.+
T Consensus 59 ~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 59 TVGDVMTRG--VVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred CHHHhccCC--ccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 477888776 458999999999999999999999999998799999999999864
No 215
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.64 E-value=6.6e-05 Score=58.77 Aligned_cols=54 Identities=22% Similarity=0.236 Sum_probs=48.1
Q ss_pred hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
.++.++|.+. ++++.++.++.++++.|.+.+.+.+||+| +|+++|+++.+|+..
T Consensus 81 ~~v~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 81 RKVADVMTRP--VVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred CCHHHHhCCC--ceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 4677888776 55899999999999999999999999999 899999999999864
No 216
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=97.64 E-value=0.00011 Score=54.95 Aligned_cols=54 Identities=28% Similarity=0.370 Sum_probs=45.8
Q ss_pred hhhhccccCCCCccccC-CCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 210 KVQDVMKPQKELPVCKE-GDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
++.++|.+.. +.+.+ ++++.++++.|.+.+.+.+||++++|+++|+|+.+|++.
T Consensus 55 ~v~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 55 PVSEVMTPEN--LLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred CHHHhcccCc--eEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 4677887653 35566 999999999999999999999998899999999999864
No 217
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.63 E-value=0.00011 Score=55.09 Aligned_cols=53 Identities=21% Similarity=0.296 Sum_probs=46.8
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
++.++|.+. ++++++++++.++++.|.+.+.+.+||++ +|+++|++|..|+..
T Consensus 57 ~~~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 57 PVKDYMSTD--VVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred cHHHHhcCC--CEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 466788775 45899999999999999999999999999 789999999999864
No 218
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.61 E-value=0.00014 Score=57.06 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=42.4
Q ss_pred CCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 286 SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 286 ~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
.+..+.+++++.++++.|.+. +...+||+|++|+++|+||..|++++
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~--~~~~~~VvD~~g~l~Givt~~Dl~~~ 48 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDE--KQSCVLVVDSDDFLEGILTLGDIQRF 48 (133)
T ss_pred CceEECCCCCHHHHHHHHHHc--CCCEEEEECCCCeEEEEEEHHHHHHH
Confidence 457899999999999999888 88899999988999999999998863
No 219
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=97.61 E-value=0.00012 Score=54.91 Aligned_cols=53 Identities=25% Similarity=0.382 Sum_probs=46.9
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
++.++|... ++.+++++++.++++.|.+++.+.+||+++ |+++|+++.+|+..
T Consensus 58 ~i~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 58 PVSEVMTAP--PITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred CHHHHhCCC--CeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 566778765 558999999999999999999999999986 89999999999874
No 220
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.61 E-value=0.00014 Score=54.76 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=49.0
Q ss_pred hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcC-CCcEEEEeeHHHHHH
Q 019775 209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDE-EYHLIGTFTDGDLRR 265 (336)
Q Consensus 209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~-~~~~~G~it~~dl~~ 265 (336)
.++.++|.+. ++++++++++.++++.|.+.+...+||+++ +++++|+++.+|+..
T Consensus 58 ~~v~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 58 VVASDIMTKP--PVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred EEHHHhccCC--CcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 4678889887 458999999999999999999999999997 789999999999864
No 221
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.60 E-value=0.00011 Score=55.10 Aligned_cols=53 Identities=28% Similarity=0.372 Sum_probs=46.6
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
++.++|.+. ++.+.++.++.+++..|.+++...+||+++ |+++|+||..|+..
T Consensus 58 ~v~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 58 KVFNIVSQD--VFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred cHHHHhcCC--cEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 566778765 558999999999999999999999999997 89999999999864
No 222
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.60 E-value=0.00019 Score=53.79 Aligned_cols=53 Identities=23% Similarity=0.359 Sum_probs=46.2
Q ss_pred hhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 211 v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
+.++|.+. ++++++++++.++++.|.+++...+||++++|+++|+++..++..
T Consensus 57 ~~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 57 VEDIMTRN--VITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred HHHhcCCC--CeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 55667655 458999999999999999999999999998899999999999853
No 223
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.60 E-value=0.00012 Score=55.37 Aligned_cols=52 Identities=31% Similarity=0.413 Sum_probs=45.2
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
+++++|.+. ++++.+++++.++++.|.+.+ .+||++++|+++|++|..++..
T Consensus 64 ~v~~~~~~~--~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 64 KVIDVMNTD--VPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred cHHHHhcCC--CceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 577888876 458999999999999998754 5999998899999999999874
No 224
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.59 E-value=0.00013 Score=66.31 Aligned_cols=55 Identities=18% Similarity=0.152 Sum_probs=50.0
Q ss_pred hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
.+++++|.+. ++++.+++++.++++.|.+++...+||+|++|+++|+|+.+|+..
T Consensus 263 ~~v~~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~ 317 (321)
T PRK11543 263 TPVNEAMTRG--GTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQ 317 (321)
T ss_pred CcHHHhcCCC--CEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHh
Confidence 3578999886 458999999999999999999999999998889999999999985
No 225
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=97.59 E-value=0.00016 Score=53.78 Aligned_cols=52 Identities=13% Similarity=0.121 Sum_probs=45.5
Q ss_pred hhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 211 v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
+.++|.+. .++++++.++.++++.|.+++...+||++ +|+++|+++.+|+..
T Consensus 52 ~~~~~~~~--~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 52 VVDYIVRG--IPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred hhhhhhcC--CcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 55677765 45899999999999999999999999998 689999999999864
No 226
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.59 E-value=0.00017 Score=53.97 Aligned_cols=55 Identities=27% Similarity=0.406 Sum_probs=48.0
Q ss_pred hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
..+.++|.+. ++++..++++.++++.|.+++...+||++++|+++|+++..|+..
T Consensus 56 ~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTRD--PVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccCC--CeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 3566778776 568999999999999999999999999998899999999999864
No 227
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=97.58 E-value=0.00012 Score=54.89 Aligned_cols=53 Identities=17% Similarity=0.272 Sum_probs=46.5
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
+++++|.+. ++.+++++++.+++++|.+++...+||+++ ++++|+++..++..
T Consensus 58 ~i~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 58 PVGEIATFP--LITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred CHHHHhCCC--cEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 466778765 558999999999999999999999999984 89999999999874
No 228
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.58 E-value=0.00017 Score=54.18 Aligned_cols=54 Identities=20% Similarity=0.301 Sum_probs=47.4
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
++.++|.+. ++.+.+++++.++++.|.+++...+||++++|+++|+++.+++.+
T Consensus 58 ~v~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 58 PVSEIMTRD--LVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred CHHHhccCC--CEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 466788776 568999999999999999988899999998899999999999863
No 229
>COG0166 Pgi Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=97.56 E-value=0.00091 Score=62.65 Aligned_cols=103 Identities=22% Similarity=0.233 Sum_probs=80.2
Q ss_pred CeEEEEeccchHHHHHHHHHHHHhcCC---eeeecCC--ccccccccCCCCCC-cEEEEEeCCCCcHHHHHHHHHHHHcC
Q 019775 55 GTIFFTGVGKSGFVANKISQTLISLGI---KSGFLNP--LDALHGDIGILSSD-DILVMFSKSGNTEELLKVVPCAKAKG 128 (336)
Q Consensus 55 ~~I~i~G~G~s~~~a~~~~~~l~~~g~---~~~~~~~--~~~~~~~~~~~~~~-dlvi~iS~sG~~~~~~~~~~~ak~~g 128 (336)
..|+.+|.|.|..-+.++...|.-... +++++.+ .+.....+..++++ .+++++|.||.|.|++...+.+++..
T Consensus 80 ~~IV~IGIGGS~LG~~~~~~aL~~~~~~~~~~~Fv~nid~~~~~~~l~~i~~~~tl~iviSKSGtT~Et~~n~~~~r~~~ 159 (446)
T COG0166 80 TDIVNIGIGGSDLGPRAVTEALRPYAPNGPRVHFVSNVDPTYLAEVLKKLDPETTLFIVISKSGTTLETLTNFRLARKWL 159 (446)
T ss_pred ceEEEeCCchhHHHHHHHHHHhhhhccCCCceEEecCCCchhhhHHHhccCcccEEEEEEeCCCCcHHHHHHHHHHHHHH
Confidence 589999999999999999888887644 6777764 45555555666644 68999999999999999999999987
Q ss_pred -------CeEEEEeCCCCCcccccc----CEEEEcCCCcc
Q 019775 129 -------AYLVSVTSVEGNALAAVC----DMNVHLPVERE 157 (336)
Q Consensus 129 -------~~vi~IT~~~~s~l~~~a----d~~i~~~~~~~ 157 (336)
.+..++|+...+.+...+ .-+|.+|..-.
T Consensus 160 ~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~f~ipd~VG 199 (446)
T COG0166 160 EKKEEAAKKHFVATSTNGGALAVLAGENGLETFEIPDWVG 199 (446)
T ss_pred HhhhhhhhcEEEEEcCCchHHHHhcCCCceeEEECCCCCC
Confidence 567788887788887555 45677776544
No 230
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.55 E-value=0.00012 Score=55.28 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=46.9
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
++.++|.+. ++++.+++++.++++.|.+.+.+.+||+++ |+++|++|..++..
T Consensus 61 ~v~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 61 TVRDIMTTE--VLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred cHHHHhccC--ceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 567888775 458999999999999999999899999996 89999999999874
No 231
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.53 E-value=0.00021 Score=55.10 Aligned_cols=50 Identities=24% Similarity=0.325 Sum_probs=43.7
Q ss_pred ccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 214 VMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 214 im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
.|... .+++++++++.+++++|.+++...+||+|++++++|+||..|+..
T Consensus 76 ~~~~~--~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 76 VKSRP--LITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred cccCC--CeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 34443 558999999999999999999999999998899999999999864
No 232
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.52 E-value=0.0002 Score=53.84 Aligned_cols=53 Identities=23% Similarity=0.324 Sum_probs=46.0
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
++.++|.+. ++++++++++.++++.|.+.+...+||++++ +++|+|+.+|+..
T Consensus 59 ~~~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 59 PVGEVMSTP--LITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred CHHHhcCCC--cEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 566788765 5589999999999999999999999999865 9999999999863
No 233
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=97.52 E-value=0.00042 Score=61.84 Aligned_cols=90 Identities=19% Similarity=0.169 Sum_probs=67.1
Q ss_pred hhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhh----hHhhhcCCC
Q 019775 211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKL----TVGEMCNRS 286 (336)
Q Consensus 211 v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~----~i~~~~~~~ 286 (336)
+.++|++. ++++++.++.++++.|.+.+...+||+|+.|.++|+||.+|++..+...-...... .+... ...
T Consensus 135 l~~l~r~~---~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~-~~~ 210 (292)
T PRK15094 135 MDKVLRQA---VVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQL-SRH 210 (292)
T ss_pred HHHHcCCC---cCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCccccccccccccEEe-CCC
Confidence 56778763 37999999999999999999999999998899999999999999887532111111 11111 223
Q ss_pred CeeeCCCccHHHHHHHhc
Q 019775 287 PRTIGPDAMAVEAMQKME 304 (336)
Q Consensus 287 ~~~v~~~~~l~~~~~~~~ 304 (336)
-+.+....++.++.+.+.
T Consensus 211 ~~~v~G~~~l~dl~~~l~ 228 (292)
T PRK15094 211 TWTVRALASIEDFNEAFG 228 (292)
T ss_pred eEEEEeccCHHHHHHHhC
Confidence 366888888888877763
No 234
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.51 E-value=0.00018 Score=55.96 Aligned_cols=53 Identities=28% Similarity=0.431 Sum_probs=47.4
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
++.++|.+. .+.+.+++++.+++..|.+.+...+||+++ |+++|++|..|+..
T Consensus 79 ~v~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 79 KVEEIMTKK--VITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred CHHHhccCC--ceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 677888776 458999999999999999999999999997 99999999999874
No 235
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.49 E-value=0.00014 Score=55.48 Aligned_cols=54 Identities=24% Similarity=0.345 Sum_probs=47.4
Q ss_pred hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
.++.++|.+. ++++++++++.++++.|.+.+.+.+||+++ |+++|+++..|+.+
T Consensus 67 ~~~~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 67 LPVSDIMTRP--VITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred cCHHHHccCC--ceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 3567788765 558999999999999999999999999997 89999999999874
No 236
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.49 E-value=0.00027 Score=54.54 Aligned_cols=47 Identities=30% Similarity=0.551 Sum_probs=42.9
Q ss_pred CCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775 285 RSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS 333 (336)
Q Consensus 285 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~ 333 (336)
+++.++.++.++.++++.|.+. +...+||+|++|+++|+++..|+++
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~--~~~~~~Vvd~~~~~~Gii~~~dl~~ 48 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEK--GFDQLPVVDESGKILGMVTLGNLLS 48 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHc--CCCEEEEEcCCCCEEEEEEHHHHHH
Confidence 4577899999999999999988 8899999998899999999999885
No 237
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.45 E-value=0.00024 Score=64.65 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=49.8
Q ss_pred hhhHhhhcCC--CCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775 276 KLTVGEMCNR--SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS 333 (336)
Q Consensus 276 ~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~ 333 (336)
..++.++|.+ ++..+.+++++.++++.|.+. +...+||+|++|+++|+||..|+.+
T Consensus 201 ~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~--~~~~~vVvd~~g~lvGivt~~Dl~~ 258 (326)
T PRK10892 201 LLRVSDIMHTGDEIPHVSKTASLRDALLEITRK--NLGMTVICDDNMKIEGIFTDGDLRR 258 (326)
T ss_pred cCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhc--CCCeEEEEcCCCcEEEEEecHHHHH
Confidence 5678999987 788999999999999999887 7888888898899999999999864
No 238
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=97.44 E-value=0.00024 Score=62.82 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=56.9
Q ss_pred hhhhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775 204 GKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA 269 (336)
Q Consensus 204 ~~~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~ 269 (336)
++....++..+|.+++. ++.+..|+..+.+.|-..+++.+||++++.+++|+||+.|++..+..
T Consensus 244 ~~~~~t~ieKVMtknp~--tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 244 DKKPSTTIEKVMTKNPI--TVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQM 307 (432)
T ss_pred cCCCCccHHHHhccCCe--eecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHH
Confidence 33446688899999865 89999999999999999999999999999999999999999987753
No 239
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.41 E-value=0.00059 Score=65.30 Aligned_cols=60 Identities=20% Similarity=0.277 Sum_probs=53.5
Q ss_pred hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHH
Q 019775 209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK 268 (336)
Q Consensus 209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~ 268 (336)
.+++++|.+...+++++++.++.++.++|.+++...+||+|++++++|+||.+||.....
T Consensus 159 ~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 159 TPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRG 218 (495)
T ss_pred CCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhccc
Confidence 468899987434678999999999999999999999999999999999999999998653
No 240
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.38 E-value=0.00035 Score=53.18 Aligned_cols=54 Identities=24% Similarity=0.465 Sum_probs=47.0
Q ss_pred hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
.++.++|.+. .+++++++++.++++.|.+.+...+||+++ |+++|+++..++..
T Consensus 67 ~~v~~~~~~~--~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 67 MPVKEIMTKD--VITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred cCHHHHhhCC--CeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 3567778775 458999999999999999999999999986 89999999999864
No 241
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=97.35 E-value=0.0004 Score=51.83 Aligned_cols=49 Identities=24% Similarity=0.274 Sum_probs=43.6
Q ss_pred ccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 214 VMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 214 im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
+|.++ ++++++++++.++.+.|.+++.+.+||++ +|+++|+++.+++..
T Consensus 56 ~m~~~--~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDPS--PFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred hccCC--CceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 67665 45899999999999999999999999995 789999999999864
No 242
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.35 E-value=0.00046 Score=53.28 Aligned_cols=55 Identities=18% Similarity=0.352 Sum_probs=47.2
Q ss_pred hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEc--CCCcEEEEeeHHHHHH
Q 019775 209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVID--EEYHLIGTFTDGDLRR 265 (336)
Q Consensus 209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd--~~~~~~G~it~~dl~~ 265 (336)
.++.++|..+ ++++.++.++.+++..|.+.+...+||++ ++|+++|+||.+|+..
T Consensus 71 ~~~~~~~~~~--~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 71 LPVYDAMSSP--VITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred CcHHHHhcCC--CceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 4677888765 56899999999999999998888999985 4689999999999864
No 243
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=97.32 E-value=0.00045 Score=60.99 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=50.6
Q ss_pred hhHhhhcCCC-CeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 277 LTVGEMCNRS-PRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 277 ~~i~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
.++.++|.++ +..+.+++++.++++.|.+. +.+.+||+|++|+++|+|+..|+.+.
T Consensus 155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~--~~~~~~Vvd~~g~~~Givt~~dl~~~ 211 (268)
T TIGR00393 155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEK--RLGSAIVCDENNQLVGVFTDGDLRRA 211 (268)
T ss_pred hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhc--CCcEEEEEeCCCCEEEEEEcHHHHHH
Confidence 6788999888 88999999999999999888 88999999988999999999998753
No 244
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=97.30 E-value=0.00052 Score=67.38 Aligned_cols=58 Identities=17% Similarity=0.178 Sum_probs=51.3
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC--CcEEEEeeHHHHHHHHHh
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE--YHLIGTFTDGDLRRTLKA 269 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~--~~~~G~it~~dl~~~~~~ 269 (336)
+++++|.++ ++++++++++.++++.|.+++.+.+||+|++ ++++|+||++|+.+.+.+
T Consensus 513 ~v~dim~~~--~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 513 TAADYAHTP--FPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred hHHHhccCC--CeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence 678889876 4589999999999999999999999999876 489999999999987653
No 245
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.30 E-value=0.0004 Score=61.08 Aligned_cols=108 Identities=18% Similarity=0.219 Sum_probs=81.0
Q ss_pred hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCe
Q 019775 209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPR 288 (336)
Q Consensus 209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~ 288 (336)
.++.++|++....+.-.+...-..+...+.....+.+.+++.+++.+|+++..++... .+.+.+.
T Consensus 274 ltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~---------------~~~~~~~ 338 (386)
T COG4175 274 LTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA---------------ALIDDVL 338 (386)
T ss_pred eeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcc---------------ccccccc
Confidence 4677888862221122333344567778887777778888878889999999887653 2345567
Q ss_pred eeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 289 TIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 289 ~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
.+..++++.+.+....+. ...+||+|++++++|+|++..++.+
T Consensus 339 ~v~~d~~~~~~~~~~~~~---~~p~aVvde~~r~vG~i~~~~vl~a 381 (386)
T COG4175 339 TVDADTPLSEILARIRQA---PCPVAVVDEDGRYVGIISRGELLEA 381 (386)
T ss_pred ccCccchHHHHHHHHhcC---CCceeEEcCCCcEEEEecHHHHHHH
Confidence 899999999999998876 5678999999999999999998864
No 246
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.28 E-value=0.00059 Score=51.52 Aligned_cols=52 Identities=21% Similarity=0.309 Sum_probs=46.6
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHh-cCcceEEEEcCCC-cEEEEeeHHHH
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTS-KGCGCLLVIDEEY-HLIGTFTDGDL 263 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~ipVvd~~~-~~~G~it~~dl 263 (336)
++.++|... ++++.++.++.++...|.+ ++.+.+||+++++ +++|++|..|+
T Consensus 63 ~v~~v~~~~--~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di 116 (117)
T COG0517 63 PVKEVMTKP--VVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI 116 (117)
T ss_pred cHHHhccCC--cEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHc
Confidence 677888864 5589999999999999999 7999999999886 99999999986
No 247
>PRK14097 pgi glucose-6-phosphate isomerase; Provisional
Probab=97.27 E-value=0.0044 Score=58.55 Aligned_cols=114 Identities=21% Similarity=0.178 Sum_probs=72.5
Q ss_pred HHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHh----c-------CCeeeecC---CccccccccCCC-CCCcEEEEE
Q 019775 44 LTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLIS----L-------GIKSGFLN---PLDALHGDIGIL-SSDDILVMF 108 (336)
Q Consensus 44 ~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~----~-------g~~~~~~~---~~~~~~~~~~~~-~~~dlvi~i 108 (336)
.++++.+.+..+.|.++|.|.|+.=++.+...|.. . +.+++++. +...+...+..+ .++.+++++
T Consensus 63 ~~~~~~~~~~~~~vV~IGIGGS~LG~~al~~al~~~~~~~~~~~~~~~~~~~f~~dn~Dp~~~~~~l~~l~~~~tl~iVi 142 (448)
T PRK14097 63 KKAAEKIKSDSDVLVVIGIGGSYLGARAAIEFLNHSFYNLLPKEQRKAPQIIFAGNSISSTYLADLLEYLKDKDFSINVI 142 (448)
T ss_pred HHHHHHHhcCCCEEEEEecCcchhhHHHHHHHhhhhhcccccccccCCccEEEecCCCCHHHHHHHHhhCCCCcEEEEEE
Confidence 34455444322599999999998766665555532 1 23454442 344444444444 356789999
Q ss_pred eCCCCcHHHHHHHHHHH----Hc-CC-----eEEEEeCCCCCccccccCE----EEEcCCCcc
Q 019775 109 SKSGNTEELLKVVPCAK----AK-GA-----YLVSVTSVEGNALAAVCDM----NVHLPVERE 157 (336)
Q Consensus 109 S~sG~~~~~~~~~~~ak----~~-g~-----~vi~IT~~~~s~l~~~ad~----~i~~~~~~~ 157 (336)
|.||.|.|+....+.++ ++ |. .+++||+...+.+...|+. ++.+|..-.
T Consensus 143 SKSGtT~ET~~~~~~~~~~l~~~~g~~~~~~~~v~iTd~~~~~L~~~a~~~g~~~f~ip~~VG 205 (448)
T PRK14097 143 SKSGTTTEPAIAFRIFKELLEKKYGKEEAKKRIYATTDKAKGALKTLADAEGYETFVIPDDVG 205 (448)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHhcCcccccceEEEEeCCCchHhhccchhcCcCEEeCCCCCC
Confidence 99999999888776544 21 31 3888898777678888873 677766543
No 248
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=97.21 E-value=0.00095 Score=49.52 Aligned_cols=53 Identities=26% Similarity=0.354 Sum_probs=46.2
Q ss_pred hhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 211 v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
+.++|... .+.+.++.++.++.+.|.+.+...+||++++++++|+++..++..
T Consensus 60 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 VGDVMTRD--VVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHhcCC--ceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 45667665 458899999999999999999999999998899999999999864
No 249
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.19 E-value=0.0007 Score=51.38 Aligned_cols=54 Identities=22% Similarity=0.226 Sum_probs=45.1
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcc---eEEEEcCCCcEEEEeeHHHHHH
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCG---CLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~ipVvd~~~~~~G~it~~dl~~ 265 (336)
+++++|.+. ++++++++++.+++..|.+++.. ..||++++|+++|+|+..++..
T Consensus 62 ~v~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 62 PVSEVMDPD--PLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred cHHHhcCCC--cEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 477888876 45899999999999999887753 4468888899999999999864
No 250
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=97.18 E-value=0.0014 Score=61.43 Aligned_cols=93 Identities=13% Similarity=0.081 Sum_probs=69.3
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhc---CCC
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMC---NRS 286 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~---~~~ 286 (336)
+++++|++ ...++++.++.++++.|.+++....+|+|+.|...|+||.+|++..+..+-.+..+ .-.+.+ ...
T Consensus 256 ~l~~~~~~---~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de~d-~~~~~i~~~~~~ 331 (408)
T TIGR03520 256 DWQSLLRE---PYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEFD-DEDLIYSKIDDN 331 (408)
T ss_pred CHHHHcCC---CeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCcCC-cCccceEEeCCC
Confidence 45677876 34899999999999999999999999999889999999999999988643221111 111111 233
Q ss_pred CeeeCCCccHHHHHHHhcCC
Q 019775 287 PRTIGPDAMAVEAMQKMESP 306 (336)
Q Consensus 287 ~~~v~~~~~l~~~~~~~~~~ 306 (336)
...+....++.++.+.|.-.
T Consensus 332 ~~~v~G~~~l~~l~~~l~~~ 351 (408)
T TIGR03520 332 NYVFEGKTSLKDFYKILKLE 351 (408)
T ss_pred eEEEEeccCHHHHHHHhCCC
Confidence 46677788999998887543
No 251
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.17 E-value=0.00074 Score=64.41 Aligned_cols=56 Identities=27% Similarity=0.405 Sum_probs=51.3
Q ss_pred hhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775 276 KLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS 333 (336)
Q Consensus 276 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~ 333 (336)
..++.++|.+++..+.+++++.++++.|.++ +...+||+|++|+++|+|+..|+++
T Consensus 334 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~--~~~~~~Vvd~~~~~~Givt~~dl~~ 389 (454)
T TIGR01137 334 NATVKDLHLPAPVTVHPTETVGDAIEILREY--GFDQLPVVTEAGKVLGSVTLRELLS 389 (454)
T ss_pred cCCHHHhCcCCCeEECCCCcHHHHHHHHHHc--CCCEEEEEcCCCeEEEEEEHHHHHH
Confidence 4678999999999999999999999999988 7889999998899999999999876
No 252
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.15 E-value=0.00088 Score=53.01 Aligned_cols=55 Identities=24% Similarity=0.317 Sum_probs=48.1
Q ss_pred hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
..++.++|.+. ++++++++++.+++..|.+.+...+||+++ ++++|+++.+|+..
T Consensus 88 ~~~v~~~~~~~--~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 88 KMKVRDIMTKK--VITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred cCCHHHHcCCC--CeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 34677888776 559999999999999999999999999987 89999999999863
No 253
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.14 E-value=0.0012 Score=49.03 Aligned_cols=52 Identities=19% Similarity=0.267 Sum_probs=44.4
Q ss_pred hhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775 211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265 (336)
Q Consensus 211 v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~ 265 (336)
+.++|... .++++.++++.++++.|.+.+...+||++ +|+++|+++..++..
T Consensus 54 ~~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~ 105 (106)
T cd04638 54 LALLMTRD--PPTVSPDDDVKEAAKLMVENNIRRVPVVD-DGKLVGIVTVADIVR 105 (106)
T ss_pred HHHHhcCC--CceECCCCCHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence 45667665 45889999999999999999999999998 479999999998864
No 254
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=97.00 E-value=0.0012 Score=62.74 Aligned_cols=58 Identities=28% Similarity=0.310 Sum_probs=51.4
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHH
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK 268 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~ 268 (336)
+++++|.+. .+++++++.++.++++.|.+++...+||+|++|+++|+||.+|++..+.
T Consensus 144 ~V~dvm~~~-~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 144 PVSEVMTRE-EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK 201 (450)
T ss_pred CHHHhhCCC-CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence 577889841 2568999999999999999999999999999999999999999998754
No 255
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=96.97 E-value=0.0016 Score=48.46 Aligned_cols=46 Identities=24% Similarity=0.444 Sum_probs=41.1
Q ss_pred CCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 286 SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 286 ~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
++..+..++++.++.+.|.+. +...+||+++ |+++|+++..|+.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~--~~~~~~V~~~-~~~~G~v~~~dl~~~ 47 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREY--GVSQLPVVDD-GRVVGSIDESDLLDA 47 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHc--CCceeeEeeC-CeeEEEEeHHHHHHH
Confidence 356789999999999999988 8889999998 999999999998864
No 256
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.89 E-value=0.0016 Score=61.26 Aligned_cols=62 Identities=21% Similarity=0.325 Sum_probs=55.4
Q ss_pred hhhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775 205 KSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA 269 (336)
Q Consensus 205 ~~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~ 269 (336)
.+...+|+++|..+ +++++.++-+-+|+-.|.++++.++||++ +|+++|++|..||+....+
T Consensus 210 ~~~~~~V~evmT~p--~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 210 RSKTQKVSEVMTSP--VISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFSQ 271 (610)
T ss_pred CCcccchhhhhccC--ceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhCC
Confidence 34567899999987 56999999999999999999999999997 7899999999999987754
No 257
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=96.88 E-value=0.051 Score=45.17 Aligned_cols=114 Identities=11% Similarity=0.092 Sum_probs=72.8
Q ss_pred CeEEEEeccchH-HHHHHHHHHHHhcCCeeeecCC-ccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEE
Q 019775 55 GTIFFTGVGKSG-FVANKISQTLISLGIKSGFLNP-LDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLV 132 (336)
Q Consensus 55 ~~I~i~G~G~s~-~~a~~~~~~l~~~g~~~~~~~~-~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi 132 (336)
++|.++|+.... .+.+.++.+.......-..+++ .+.+. .......|++|++....+ ..+++.|.+.|+++|
T Consensus 62 ~~ILfVgtk~~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~--~~~~~~Pdlliv~dp~~~----~~Av~EA~~l~IP~I 135 (196)
T TIGR01012 62 EDILVVSARIYGQKPVLKFAKVTGARAIAGRFTPGTFTNPM--QKAFREPEVVVVTDPRAD----HQALKEASEVGIPIV 135 (196)
T ss_pred CeEEEEecCHHHHHHHHHHHHHhCCceECCeeCCCCCCCcc--ccccCCCCEEEEECCccc----cHHHHHHHHcCCCEE
Confidence 589999998633 4455555555433333334432 11111 123567888888754433 456788899999999
Q ss_pred EEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcC
Q 019775 133 SVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARN 188 (336)
Q Consensus 133 ~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~ 188 (336)
+|++....| ++.|+.|.+ +.. |.-+.-+++.+|...+...++
T Consensus 136 ai~DTn~dp--~~vdypIP~--Ndd----------s~~Si~li~~lla~ail~~~g 177 (196)
T TIGR01012 136 ALCDTDNPL--RYVDLVIPT--NNK----------GRHSLALIYWLLAREILRMRG 177 (196)
T ss_pred EEeeCCCCC--ccCCEEECC--CCc----------hHHHHHHHHHHHHHHHHHhhC
Confidence 999875554 557776554 433 556667888888888887764
No 258
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=96.86 E-value=0.0037 Score=58.69 Aligned_cols=62 Identities=18% Similarity=0.142 Sum_probs=56.4
Q ss_pred hhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhc
Q 019775 207 LIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKAS 270 (336)
Q Consensus 207 ~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~ 270 (336)
...+++++|.+. ++.+.+++.-+++.+.+.+++.-.+||+|++++++|++|..|+...+.++
T Consensus 194 ~~~~i~~im~~~--~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eE 255 (451)
T COG2239 194 PDELLKDLMEDD--VVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEE 255 (451)
T ss_pred cHhHHHHHhccc--ceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHH
Confidence 356889999998 45899999999999999999999999999999999999999999988653
No 259
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=96.82 E-value=0.0034 Score=57.82 Aligned_cols=56 Identities=27% Similarity=0.453 Sum_probs=48.4
Q ss_pred hhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775 211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA 269 (336)
Q Consensus 211 v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~ 269 (336)
+.+.+.+. +++++++.++.+++..+.++++. +||+|++|+++|+|+..++...+..
T Consensus 304 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 304 LQDVLIDD--IYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYD 359 (363)
T ss_pred hhhhhccC--CceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 34455554 55899999999999999999988 9999999999999999999988764
No 260
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=96.73 E-value=0.099 Score=43.77 Aligned_cols=127 Identities=13% Similarity=0.110 Sum_probs=75.3
Q ss_pred HHHHHHHHHc-CCCeEEEEeccchH-HHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHH
Q 019775 43 TLTFTQTLLK-CRGTIFFTGVGKSG-FVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKV 120 (336)
Q Consensus 43 i~~~~~~i~~-a~~~I~i~G~G~s~-~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~ 120 (336)
+..+++.+.+ .+++|.++|+.... .+...++.+....-..-..+++ ..--.........|++|++....+ ..+
T Consensus 55 L~~A~~~i~~~~~~~ILfVgTk~~~~~~v~k~A~~~g~~~v~~RWlgG-~LTN~~~~~~~~Pdliiv~dp~~~----~~A 129 (204)
T PRK04020 55 IRIAAKFLSRYEPEKILVVSSRQYGQKPVQKFAEVVGAKAITGRFIPG-TLTNPSLKGYIEPDVVVVTDPRGD----AQA 129 (204)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHhCCeeecCccCCC-cCcCcchhccCCCCEEEEECCccc----HHH
Confidence 4444444432 22689999987643 4444444444322111122322 111111222346799888887555 566
Q ss_pred HHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcC
Q 019775 121 VPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARN 188 (336)
Q Consensus 121 ~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~ 188 (336)
++.|.+.|+++|+|++....| ++.|+.|.+.. . |.-+.-+++.+|...+...++
T Consensus 130 I~EA~kl~IP~IaivDTn~dp--~~VdypIP~Nd--d----------s~~SI~li~~ll~~aIl~~kg 183 (204)
T PRK04020 130 VKEAIEVGIPVVALCDTDNLT--SNVDLVIPTNN--K----------GRKALALVYWLLAREILRERG 183 (204)
T ss_pred HHHHHHhCCCEEEEEeCCCCc--ccCceeECCCC--c----------hHHHHHHHHHHHHHHHHHhhC
Confidence 788899999999999875555 56777755433 3 445566788888887777754
No 261
>PF00342 PGI: Phosphoglucose isomerase The structure is C alpha atoms only with no sequence assignment.; InterPro: IPR001672 Phosphoglucose isomerase (5.3.1.9 from EC) (PGI) [, ] is a dimeric enzyme that catalyses the reversible isomerization of glucose-6-phosphate and fructose-6-phosphate. PGI is involved in different pathways: in most higher organisms it is involved in glycolysis; in mammals it is involved in gluconeogenesis; in plants in carbohydrate biosynthesis; in some bacteria it provides a gateway for fructose into the Entner-Doudouroff pathway. The multifunctional protein, PGI, is also known as neuroleukin (a neurotrophic factor that mediates the differentiation of neurons), autocrine motility factor (a tumour-secreted cytokine that regulates cell motility), differentiation and maturation mediator and myofibril-bound serine proteinase inhibitor, and has different roles inside and outside the cell. In the cytoplasm, it catalyses the second step in glycolysis, while outside the cell it serves as a nerve growth factor and cytokine []. PGI from Bacillus stearothermophilus has an open twisted alpha/beta structural motif consisting of two globular domains and two protruding parts. It has been suggested that the top part of the large domain together with one of the protruding loops might participate in inducing the neurotrophic activity []. The structure of rabbit muscle phosphoglucose isomerase complexed with various inhibitors shows that the enzyme is a dimer with two alpha/beta-sandwich domains in each subunit. The location of the bound D-gluconate 6-phosphate inhibitor leads to the identification of residues involved in substrate specificity. In addition, the positions of amino acid residues that are substituted in the genetic disease nonspherocytic hemolytic anemia suggest how these substitutions can result in altered catalysis or protein stability [, ].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis; PDB: 1ZZG_B 1JIQ_A 1IRI_B 1IAT_A 1JLH_C 1NUH_A 1KOJ_A 1HOX_A 1G98_B 1DQR_A ....
Probab=96.63 E-value=0.013 Score=55.90 Aligned_cols=101 Identities=23% Similarity=0.243 Sum_probs=69.1
Q ss_pred CeEEEEeccchHHHHHHHHHHHHhcC---CeeeecC--CccccccccCCCCCC-cEEEEEeCCCCcHHHHHHHHHHHH--
Q 019775 55 GTIFFTGVGKSGFVANKISQTLISLG---IKSGFLN--PLDALHGDIGILSSD-DILVMFSKSGNTEELLKVVPCAKA-- 126 (336)
Q Consensus 55 ~~I~i~G~G~s~~~a~~~~~~l~~~g---~~~~~~~--~~~~~~~~~~~~~~~-dlvi~iS~sG~~~~~~~~~~~ak~-- 126 (336)
+.|.++|.|.|+.=.+.+...|.... ..++++. +...+...+..+++. .+++++|.||.|.|+....+.+++
T Consensus 97 ~~vV~IGIGGS~LGp~~~~~al~~~~~~~~~~~f~~n~Dp~~l~~~l~~ld~~~Tl~iViSKSgtT~ET~~n~~~~~~~l 176 (486)
T PF00342_consen 97 TDVVVIGIGGSSLGPRALYEALKPYFSNPPRLHFLDNVDPADLARLLERLDPETTLFIVISKSGTTIETLANFRIAREWL 176 (486)
T ss_dssp SEEEEE--GGGTHHHHHHHHHTGGGTTSSCEEEEESSSSHHHHHHHHTTSTGGGEEEEEEESSST-HHHHHHHHHHHHHH
T ss_pred eEEEEEecchhhHHHHHHHHHhhhhcccceEEEEeccCChHHHHHHHhcCCCccEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 58999999999988888888887653 5677777 455555556666664 678999999999999987776654
Q ss_pred --c-------CCeEEEEeCCCCCcccccc--CEEEEcCCC
Q 019775 127 --K-------GAYLVSVTSVEGNALAAVC--DMNVHLPVE 155 (336)
Q Consensus 127 --~-------g~~vi~IT~~~~s~l~~~a--d~~i~~~~~ 155 (336)
+ +-.+|+||++........+ +.+|.++..
T Consensus 177 ~~~~~~~~~~~~h~vavT~~~~~~~~~~~~~~~~f~~~d~ 216 (486)
T PF00342_consen 177 EKKGGDKEEAAKHFVAVTDNGSGALKFGIDEENIFPIPDW 216 (486)
T ss_dssp HHHHHSGGGGGGTEEEEESSHHHHHHHTHHGGGEEE--TT
T ss_pred HhhcCccccccceEEEeCCCchHHHHHHHHHhcceecccc
Confidence 2 2469999988665543333 366666554
No 262
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=96.61 E-value=0.068 Score=45.97 Aligned_cols=119 Identities=9% Similarity=0.024 Sum_probs=71.8
Q ss_pred HHcCCCeEEEEeccchH-HHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcC
Q 019775 50 LLKCRGTIFFTGVGKSG-FVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKG 128 (336)
Q Consensus 50 i~~a~~~I~i~G~G~s~-~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g 128 (336)
+.+. +.|.++|+.... .+...++.+....-+.=..++ +..--.........|++|++....+ ..+++.|...|
T Consensus 68 i~~~-~~Il~Vstr~~~~~~V~k~A~~tg~~~i~~Rw~p-GtlTN~~~~~f~~P~llIV~Dp~~d----~qAI~EA~~ln 141 (249)
T PTZ00254 68 IENP-ADVVVVSSRPYGQRAVLKFAQYTGASAIAGRFTP-GTFTNQIQKKFMEPRLLIVTDPRTD----HQAIREASYVN 141 (249)
T ss_pred HhCC-CcEEEEEcCHHHHHHHHHHHHHhCCeEECCcccC-CCCCCccccccCCCCEEEEeCCCcc----hHHHHHHHHhC
Confidence 3455 589999987633 344444444432211112232 2111112234567788888764333 45678888999
Q ss_pred CeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcC
Q 019775 129 AYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARN 188 (336)
Q Consensus 129 ~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~ 188 (336)
++||+|++. ++++ .+.|+.|.+.. . |.-+.-+++.+|...+...++
T Consensus 142 IPvIal~DT-ds~p-~~VDy~IP~Nd--d----------s~~SI~li~~lLar~Vl~~rG 187 (249)
T PTZ00254 142 IPVIALCDT-DSPL-EYVDIAIPCNN--R----------GKESIALMYWLLAREVLRLRG 187 (249)
T ss_pred CCEEEEecC-CCCc-ccCceeeCCCC--c----------hHHHHHHHHHHHHHHHHHhhC
Confidence 999999986 5554 55777765544 3 445567778888888777765
No 263
>PRK00179 pgi glucose-6-phosphate isomerase; Reviewed
Probab=96.57 E-value=0.03 Score=54.15 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHc----------CCCeEEEEeccchHHHHHHHHHHHHhc---CCeeeecC--CccccccccCCCC-CCcE
Q 019775 41 PHTLTFTQTLLK----------CRGTIFFTGVGKSGFVANKISQTLISL---GIKSGFLN--PLDALHGDIGILS-SDDI 104 (336)
Q Consensus 41 ~~i~~~~~~i~~----------a~~~I~i~G~G~s~~~a~~~~~~l~~~---g~~~~~~~--~~~~~~~~~~~~~-~~dl 104 (336)
+.++++++.+.+ - +.|.++|.|.|+.=.+.+...|... +.+++++. |...+...+..++ ++.+
T Consensus 123 ~~~~~f~~~i~~g~~~g~~g~~~-~~vV~IGIGGS~LGp~~~~~al~~~~~~~~~l~fl~nvDp~~~~~~l~~l~~~~TL 201 (548)
T PRK00179 123 ARMKAFAEAVRSGEWKGYTGKAI-TDVVNIGIGGSDLGPVMVTEALRPYADPGLRVHFVSNVDGAHLAETLKKLDPETTL 201 (548)
T ss_pred HHHHHHHHHHHhCCccCCCCCcc-CeEEEECCCcchHHHHHHHHHhhhhccCCCceEEEeCCCHHHHHHHHhcCCcccEE
Confidence 466777777764 3 5899999999997777776666532 44566665 3444444444444 4568
Q ss_pred EEEEeCCCCcHHHHHHHHHHH----Hc-------CCeEEEEeCCCCCccccccCE---EEEcCCCc
Q 019775 105 LVMFSKSGNTEELLKVVPCAK----AK-------GAYLVSVTSVEGNALAAVCDM---NVHLPVER 156 (336)
Q Consensus 105 vi~iS~sG~~~~~~~~~~~ak----~~-------g~~vi~IT~~~~s~l~~~ad~---~i~~~~~~ 156 (336)
+|++|.||.|.|+....+.++ ++ +-.+|+||++ .+++.+..-- +|.++..-
T Consensus 202 ~iViSKSgtT~ET~~n~~~~~~~l~~~~~~~~~~~~h~vaVT~~-~~~~~~~g~~~~~~F~~~d~V 266 (548)
T PRK00179 202 FIVASKTFTTQETLTNAHSARDWFLAAGGDEAAVAKHFVAVSTN-AEAVAEFGIDPDNMFGFWDWV 266 (548)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHhcCccccccceEEEEcCC-cHHHHHcCCchhcEEECCCCC
Confidence 999999999999986655443 22 2248898986 4445443322 66666543
No 264
>PLN02649 glucose-6-phosphate isomerase
Probab=96.41 E-value=0.019 Score=55.55 Aligned_cols=113 Identities=17% Similarity=0.133 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHc----------CCCeEEEEeccchHHHHHHHHHHHHhc--------CCeeeecC--CccccccccCCCC
Q 019775 41 PHTLTFTQTLLK----------CRGTIFFTGVGKSGFVANKISQTLISL--------GIKSGFLN--PLDALHGDIGILS 100 (336)
Q Consensus 41 ~~i~~~~~~i~~----------a~~~I~i~G~G~s~~~a~~~~~~l~~~--------g~~~~~~~--~~~~~~~~~~~~~ 100 (336)
+.+.++++.+.+ - +.|.++|.|.|+.=.+.+...|... |.+++++. |...+...+..++
T Consensus 125 ~r~~~f~~~vr~g~~~g~tg~~~-~~VV~IGIGGS~LGp~~v~~AL~~~~~~~~~~~~~~~~fv~NvDp~~~~~~l~~l~ 203 (560)
T PLN02649 125 DKIKAFSEDVRSGKWKGATGKRF-TNVVSIGIGGSFLGPLFVHEALATDPEALKSAKGRKLRFLANVDPVDIARQIAQLD 203 (560)
T ss_pred HHHHHHHHHHHcCCcccCCCCcc-ceEEEEecCcchHHHHHHHHHHhhhccccccccCCcEEEEeCCCHHHHHHHHhhCC
Confidence 456667777763 3 5899999999986666665555432 23566655 4444444454454
Q ss_pred C-CcEEEEEeCCCCcHHHHHHHHHHHH----c------CCeEEEEeCCCCCccccccC----EEEEcCCCc
Q 019775 101 S-DDILVMFSKSGNTEELLKVVPCAKA----K------GAYLVSVTSVEGNALAAVCD----MNVHLPVER 156 (336)
Q Consensus 101 ~-~dlvi~iS~sG~~~~~~~~~~~ak~----~------g~~vi~IT~~~~s~l~~~ad----~~i~~~~~~ 156 (336)
+ ..++|++|.||.|.|+....+.+++ + .-.+|+||. ++++.+.+. -+|.++...
T Consensus 204 p~~TL~iViSKSgtT~ET~~n~~~~r~~l~~~~g~~~~~~h~vavT~--~~~l~~~a~~~~~~~F~~~d~V 272 (560)
T PLN02649 204 PETTLVVVVSKTFTTAETMLNARTVRKWLRDALGGLAVAKHMVAVST--NLLLVNKFGIDPWNAFPFWDWV 272 (560)
T ss_pred cccEEEEEEeCCCCCHHHHHHHHHHHHHHHhhcccccccceEEEECC--ChHHHHHhCcCCccEEeCCCCC
Confidence 4 5689999999999999888766553 2 224889994 445766665 356665543
No 265
>PTZ00430 glucose-6-phosphate isomerase; Provisional
Probab=96.21 E-value=0.031 Score=53.96 Aligned_cols=97 Identities=18% Similarity=0.201 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHc----------CCCeEEEEeccchHHHHHHHHHHHHhc--------CCeeeecC--CccccccccCCCC
Q 019775 41 PHTLTFTQTLLK----------CRGTIFFTGVGKSGFVANKISQTLISL--------GIKSGFLN--PLDALHGDIGILS 100 (336)
Q Consensus 41 ~~i~~~~~~i~~----------a~~~I~i~G~G~s~~~a~~~~~~l~~~--------g~~~~~~~--~~~~~~~~~~~~~ 100 (336)
+.++++++.+.+ - +.|.++|.|.|..=.+.+...|... +.+++++. |...+...+..++
T Consensus 120 ~~~~~f~~~v~~g~~~g~tg~~~-~~VV~IGIGGS~LGp~~v~~AL~~~~~~~~~~~~~~~~Fv~NvDp~~~~~~l~~ld 198 (552)
T PTZ00430 120 DRIKKFSDKIRSGEILGSTGKKL-KNVICIGIGGSYLGTEFVYEALRTYGEAREASKGRKLRFLANVDPIDVRRATEGLD 198 (552)
T ss_pred HHHHHHHHHHHcCCccCCCCCee-ceEEEEcCCccchHHHHHHHHHhhcccccccccCCcEEEEeCCCHHHHHHHHhhCC
Confidence 456677777763 3 5899999999987666666666532 24566665 4444555555554
Q ss_pred C-CcEEEEEeCCCCcHHHHHHHHHHHH----c-C------CeEEEEeCCC
Q 019775 101 S-DDILVMFSKSGNTEELLKVVPCAKA----K-G------AYLVSVTSVE 138 (336)
Q Consensus 101 ~-~dlvi~iS~sG~~~~~~~~~~~ak~----~-g------~~vi~IT~~~ 138 (336)
+ ..++|++|.||.|.|+....+.+++ + | -..|+||++.
T Consensus 199 p~~TLfiViSKSgtT~ETl~n~~~~r~wl~~~~~~~~~~~~h~vavT~~~ 248 (552)
T PTZ00430 199 PEETLVVIISKTFTTAETMLNAKTVRQWLLDNIKSKEALSKHLCAVSTNL 248 (552)
T ss_pred cccEEEEEEeCCCCCHHHHHHHHHHHHHHHHhccccccccCeEEEEcCch
Confidence 4 5689999999999999866554432 2 1 2488999864
No 266
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=96.21 E-value=0.22 Score=41.62 Aligned_cols=67 Identities=10% Similarity=0.131 Sum_probs=45.9
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHH
Q 019775 99 LSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDT 178 (336)
Q Consensus 99 ~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~ 178 (336)
....|++|++....+ ..++++|...|+++|++++....| .+.|+.|..... |.-+..+++.+
T Consensus 125 ~~~Pdlviv~~~~~~----~~ai~Ea~~l~IP~I~i~Dtn~~~--~~i~ypIP~Nd~------------s~~si~li~~~ 186 (193)
T cd01425 125 FRLPDLVIVLDPRKE----HQAIREASKLGIPVIAIVDTNCDP--DLIDYPIPANDD------------SIRSIALILWL 186 (193)
T ss_pred ccCCCEEEEeCCccc----hHHHHHHHHcCCCEEEEecCCCCC--ccceEEeecCCc------------hHHHHHHHHHH
Confidence 457899999975333 567889999999999999876433 456766655443 44555666666
Q ss_pred HHHHH
Q 019775 179 VAIAM 183 (336)
Q Consensus 179 l~~~~ 183 (336)
|...+
T Consensus 187 l~~ai 191 (193)
T cd01425 187 LARAI 191 (193)
T ss_pred HHHHH
Confidence 65544
No 267
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.16 E-value=0.016 Score=54.13 Aligned_cols=57 Identities=18% Similarity=0.324 Sum_probs=48.3
Q ss_pred hhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhc
Q 019775 211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKAS 270 (336)
Q Consensus 211 v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~ 270 (336)
+.+.+.+. .+++.+++++.+++..+.++... +||+|++|+++|+|+..++...+...
T Consensus 339 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 339 LDAALIDA--PLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred hhhhhccC--CceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 44555554 45899999999999999987766 99999999999999999999988653
No 268
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.13 E-value=0.041 Score=53.83 Aligned_cols=97 Identities=10% Similarity=0.103 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCChHH-HhhcCCCC---chhh----hhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcC
Q 019775 170 AIQMVFGDTVAIAMMGARNLTRDE-YAANHPAG---RIGK----SLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKG 241 (336)
Q Consensus 170 ~~~~~l~d~l~~~~~~~~~~~~~~-~~~~~~~~---~~~~----~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~ 241 (336)
+...++.-++..++++..+-+.-+ +.+..+-. ++.. .-.+.|+++|..+ ++.+..+.|.+|..+.+....
T Consensus 541 iLPVmIAVllaNAVa~~LQPSiYDSII~IKklPYLPDlpps~~~~h~v~VE~iMV~d--v~yI~k~~Ty~elre~l~~~~ 618 (931)
T KOG0476|consen 541 ILPVMIAVLLANAVAASLQPSIYDSIIRIKKLPYLPDLPPSRSSVHTVKVEHIMVTD--VKYITKDTTYRELREALQTTT 618 (931)
T ss_pred HHHHHHHHHHHHHHHHHhCcchhhheeeeccCCcCCCCCCcccceeEEEeeeecccc--ceeeeccCcHHHHHHHHHhCc
Confidence 444455666777777776544333 22211111 1111 1267899999998 669999999999999888776
Q ss_pred cceEEEEcCC--CcEEEEeeHHHHHHHHH
Q 019775 242 CGCLLVIDEE--YHLIGTFTDGDLRRTLK 268 (336)
Q Consensus 242 ~~~ipVvd~~--~~~~G~it~~dl~~~~~ 268 (336)
.+.+|+||+. .-++|.|.++.|...+.
T Consensus 619 lR~~PlV~s~esmiLlGSV~R~~L~~ll~ 647 (931)
T KOG0476|consen 619 LRSFPLVESKESMILLGSVARRYLTALLQ 647 (931)
T ss_pred cceeccccCcccceeeehhHHHHHHHHHH
Confidence 9999999943 46899999999987664
No 269
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=95.83 E-value=0.23 Score=43.38 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=51.6
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHH
Q 019775 100 SSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTV 179 (336)
Q Consensus 100 ~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l 179 (336)
...|++|++....+. .++++|...|++||++.+....| .+.|+.|.... . |.-+.-+++.+|
T Consensus 156 ~~Pd~iii~d~~~~~----~ai~Ea~kl~IPiIaivDTn~dp--~~IdypIP~Nd--d----------s~~si~li~~~l 217 (258)
T PRK05299 156 GLPDALFVVDPNKEH----IAVKEARKLGIPVVAIVDTNCDP--DGVDYPIPGND--D----------AIRSIKLYTSKI 217 (258)
T ss_pred cCCCEEEEeCCCccH----HHHHHHHHhCCCEEEEeeCCCCC--cccceeeecCC--c----------hHHHHHHHHHHH
Confidence 467999998876443 66788999999999999875544 45676665543 3 556667888888
Q ss_pred HHHHHhhcC
Q 019775 180 AIAMMGARN 188 (336)
Q Consensus 180 ~~~~~~~~~ 188 (336)
...+.+.++
T Consensus 218 ~~ai~~g~~ 226 (258)
T PRK05299 218 ADAILEGRQ 226 (258)
T ss_pred HHHHHHHhh
Confidence 877777654
No 270
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=95.68 E-value=0.2 Score=49.19 Aligned_cols=117 Identities=12% Similarity=0.169 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHcC-CCeEEEEeccchHHHHHHHHHHHH-hcCCeeee-----cCCc--cccc---------cccCCCCCC
Q 019775 41 PHTLTFTQTLLKC-RGTIFFTGVGKSGFVANKISQTLI-SLGIKSGF-----LNPL--DALH---------GDIGILSSD 102 (336)
Q Consensus 41 ~~i~~~~~~i~~a-~~~I~i~G~G~s~~~a~~~~~~l~-~~g~~~~~-----~~~~--~~~~---------~~~~~~~~~ 102 (336)
+.++.+++.+.+. ++.+.+++.|.+..-+.++..+|. .+|-+... .... ..+. ..+..+..-
T Consensus 85 EAl~~IA~kL~~~~~~~~~~y~sg~~snE~~~l~q~f~r~lGt~n~~~~s~~C~~~~~~al~~~~G~~~~t~~~~Di~~a 164 (574)
T cd02767 85 EAFAEIAARLRALDPDRAAFYTSGRASNEAAYLYQLFARAYGTNNLPDCSNMCHEPSSVGLKKSIGVGKGTVSLEDFEHT 164 (574)
T ss_pred HHHHHHHHHHhhhCCCcEEEEecCCCccHHHHHHHHHHHHhCCCCcCCCCCCcchHHHhHHHHhcCCCCCCCCHHHHhcC
Confidence 3455555555433 147888888765554445555554 34543211 1100 0000 011223456
Q ss_pred cEEEEEeCC-CCc-HHHHHHHHHHHHcCCeEEEEeCCCCC----------------ccccccCEEEEcCCCcc
Q 019775 103 DILVMFSKS-GNT-EELLKVVPCAKAKGAYLVSVTSVEGN----------------ALAAVCDMNVHLPVERE 157 (336)
Q Consensus 103 dlvi~iS~s-G~~-~~~~~~~~~ak~~g~~vi~IT~~~~s----------------~l~~~ad~~i~~~~~~~ 157 (336)
|++|++... +.+ +.+...++.|+++|+++|+|-..... ..++.||..+.+..+.+
T Consensus 165 d~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~~gl~~f~~p~~~~~~lt~~a~~Ad~~l~irPGtD 237 (574)
T cd02767 165 DLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLREPGLERFANPQNPESMLTGGTKIADEYFQVRIGGD 237 (574)
T ss_pred CEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCccccccccccccccccccccchhhhCeeeCCCCCcH
Confidence 888888554 433 55677788999999999999775431 33577899888876655
No 271
>PRK11573 hypothetical protein; Provisional
Probab=95.44 E-value=0.058 Score=50.69 Aligned_cols=91 Identities=20% Similarity=0.155 Sum_probs=65.2
Q ss_pred hhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhh-Hhhhc--CCCC
Q 019775 211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLT-VGEMC--NRSP 287 (336)
Q Consensus 211 v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~-i~~~~--~~~~ 287 (336)
+.+++++ ...++.+.++.++++.|.+++.....|+|+-|...|+||.+|++..+...-.+..+.. ...+. ...-
T Consensus 257 l~~~~r~---~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~de~d~~~~~~i~~~~~~~ 333 (413)
T PRK11573 257 MLRAADE---IYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGS 333 (413)
T ss_pred HHhhccC---CeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCCcccCcccccceEEecCCE
Confidence 4466666 3479999999999999999999899999999999999999999998875322111100 01111 1223
Q ss_pred eeeCCCccHHHHHHHhc
Q 019775 288 RTIGPDAMAVEAMQKME 304 (336)
Q Consensus 288 ~~v~~~~~l~~~~~~~~ 304 (336)
+.+....++.++-+.+.
T Consensus 334 ~~v~G~~~l~d~~~~l~ 350 (413)
T PRK11573 334 VIIDGTANVREINKAFN 350 (413)
T ss_pred EEEEeeeEHHHHHHHhC
Confidence 56777788888877763
No 272
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=95.42 E-value=0.22 Score=40.15 Aligned_cols=102 Identities=6% Similarity=0.056 Sum_probs=66.9
Q ss_pred HHHHHHHHcCCCeEEEEeccchH-HHHHHHHHHHHhcCCeeeecCCc------ccc-cc-----ccC---------CC--
Q 019775 44 LTFTQTLLKCRGTIFFTGVGKSG-FVANKISQTLISLGIKSGFLNPL------DAL-HG-----DIG---------IL-- 99 (336)
Q Consensus 44 ~~~~~~i~~a~~~I~i~G~G~s~-~~a~~~~~~l~~~g~~~~~~~~~------~~~-~~-----~~~---------~~-- 99 (336)
++++++|.++++.++++|.|... ..++.+.....++|.++...... ... .. .+. .+
T Consensus 18 ~~aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~~~~~~~kgv~~~~~~lg~~g~~~~~p~~e~~~g 97 (162)
T TIGR00315 18 KLVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADTYRALIEAGIESEEMNLHEITQFLADPSWEGFDG 97 (162)
T ss_pred HHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCccccccccCCeecCCCCHHHHHHhccCchhhhccC
Confidence 67788888888888999998753 55556555555678888765532 100 00 000 12
Q ss_pred -CCCcEEEEEeCCCC-cHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEE
Q 019775 100 -SSDDILVMFSKSGN-TEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVH 151 (336)
Q Consensus 100 -~~~dlvi~iS~sG~-~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~ 151 (336)
.+-|++|++-.+=+ ...+++.+|... ..++|+|+.. ..+.||+.|.
T Consensus 98 ~g~~DlvlfvG~~~y~~~~~ls~lk~f~--~~~~i~l~~~----y~pnA~~Sf~ 145 (162)
T TIGR00315 98 EGNYDLVLFLGIIYYYLSQMLSSLKHFS--HIVTIAIDKY----YQPNADYSFP 145 (162)
T ss_pred CCCcCEEEEeCCcchHHHHHHHHHHhhc--CcEEEEecCC----CCCCCceecc
Confidence 56788888855544 455888888666 6999999943 2566888763
No 273
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=95.38 E-value=0.81 Score=39.17 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=50.3
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHH
Q 019775 100 SSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTV 179 (336)
Q Consensus 100 ~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l 179 (336)
...|++|++....+ ..++++|...|+++|++.+....| .+.|+.|.+... |.-+..+++.+|
T Consensus 154 ~~Pd~vii~d~~~~----~~ai~Ea~~l~IP~I~ivDTn~~p--~~idypIP~Ndd------------s~~si~li~~~l 215 (225)
T TIGR01011 154 KLPDLLFVIDPVKE----KIAVAEARKLGIPVVAIVDTNCDP--DLVDYPIPGNDD------------AIRSIRLLTNLI 215 (225)
T ss_pred cCCCEEEEeCCCcc----HHHHHHHHHcCCCEEEEeeCCCCC--cccceeeecCCc------------hHHHHHHHHHHH
Confidence 45789999887533 456788899999999999975554 457777665443 456667788887
Q ss_pred HHHHHhhc
Q 019775 180 AIAMMGAR 187 (336)
Q Consensus 180 ~~~~~~~~ 187 (336)
...+.+.+
T Consensus 216 ~~ai~~g~ 223 (225)
T TIGR01011 216 ADAVLEGK 223 (225)
T ss_pred HHHHHHHh
Confidence 77776543
No 274
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=95.32 E-value=0.36 Score=43.55 Aligned_cols=69 Identities=12% Similarity=0.117 Sum_probs=49.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHH
Q 019775 101 SDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVA 180 (336)
Q Consensus 101 ~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~ 180 (336)
..|++|++....+ ..+++.|++.|++||+|.+....| .+.||.|.+ +.. |.-+..+++++|.
T Consensus 152 ~Pd~viv~d~~~e----~~AI~EA~kl~IPvIaivDTn~dp--~~IdypIP~--NDd----------s~~si~li~~~la 213 (326)
T PRK12311 152 LPDLLFVIDTNKE----DIAIQEAQRLGIPVAAIVDTNCDP--DGITYPVPG--NDD----------AGRAIALYCDLIA 213 (326)
T ss_pred CCCEEEEeCCccc----hHHHHHHHHcCCCEEEEeeCCCCc--cccceeecC--CCc----------hHHHHHHHHHHHH
Confidence 5789888887644 567789999999999999875544 456776554 433 4555667777777
Q ss_pred HHHHhhc
Q 019775 181 IAMMGAR 187 (336)
Q Consensus 181 ~~~~~~~ 187 (336)
..+.+..
T Consensus 214 ~ai~~g~ 220 (326)
T PRK12311 214 RAAIDGI 220 (326)
T ss_pred HHHHHHH
Confidence 7776664
No 275
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=95.19 E-value=0.43 Score=48.53 Aligned_cols=117 Identities=16% Similarity=0.210 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHcC-CCeEEEEeccchHHHHHHHHHHHHh-cCCeeee-----cCCcc--ccc---------cccCCCCCC
Q 019775 41 PHTLTFTQTLLKC-RGTIFFTGVGKSGFVANKISQTLIS-LGIKSGF-----LNPLD--ALH---------GDIGILSSD 102 (336)
Q Consensus 41 ~~i~~~~~~i~~a-~~~I~i~G~G~s~~~a~~~~~~l~~-~g~~~~~-----~~~~~--~~~---------~~~~~~~~~ 102 (336)
+.++.+++.+.+. .+.|.+++.|....-+.++..+|.+ +|-+-+. ..... .+. .....+..-
T Consensus 120 EAl~~IA~kL~~~~p~~i~~y~sg~~s~e~~~~~~~f~r~lGt~n~~~~s~~C~~~~~~al~~~~G~~~~t~~~~Di~~a 199 (743)
T TIGR01701 120 DAYQEIAAKLNSLDPKQVAFYTSGRTSNEAAYLYQLFARSLGSNNLPDCSNMCHEPSSVALKRSIGIGKGSVNLEDFEHT 199 (743)
T ss_pred HHHHHHHHHHHhcCCCeEEEEecCCcchHHHHHHHHHHHHhCCCCcCCCcccccchhhHHHHHhcCCCCCCCCHhHHHhC
Confidence 3455555555432 2589889888765555555555543 4543221 11100 000 011223456
Q ss_pred cEEEEEeCC-CCc-HHHHHHHHHHHHcCCeEEEEeCCCCC-----------------ccccccCEEEEcCCCcc
Q 019775 103 DILVMFSKS-GNT-EELLKVVPCAKAKGAYLVSVTSVEGN-----------------ALAAVCDMNVHLPVERE 157 (336)
Q Consensus 103 dlvi~iS~s-G~~-~~~~~~~~~ak~~g~~vi~IT~~~~s-----------------~l~~~ad~~i~~~~~~~ 157 (336)
|++|++... +.+ +.+...++.|+++|+++|+|-..... .-++.||..+.+..+.+
T Consensus 200 d~Il~~G~Np~~~~p~~~~~l~~a~~rGakiIvIdP~~~~~l~rf~~p~~~~~~~t~~~a~~Ad~~l~irPGtD 273 (743)
T TIGR01701 200 DCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAINPLRERGLERFWIPQIPESMLTGGGTQISSEYYQVRIGGD 273 (743)
T ss_pred CEEEEEecCcccccHHHHHHHHHHHHCCCEEEEECCCCcccccccccccccchhccccchHhhCeeecCCCCcH
Confidence 888888554 433 45677788999999999999764322 11577899988876665
No 276
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=95.15 E-value=1 Score=42.60 Aligned_cols=142 Identities=8% Similarity=0.105 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEEEE-EeCCCCcHHHH
Q 019775 41 PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDILVM-FSKSGNTEELL 118 (336)
Q Consensus 41 ~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlvi~-iS~sG~~~~~~ 118 (336)
+.+.++++.+.+. +...++|.|..+..|.+-+.+...+ -..+.-+-.++.-+..++..+++--+|. .......+...
T Consensus 514 ~~i~~la~~l~~~-~slLi~GRGy~~at~lEGAlKiKEisymHsEgilagElkHgplAlvd~~~pi~~i~~~D~~~~K~~ 592 (670)
T KOG1268|consen 514 PKIKDLAKELKDH-KSLLIMGRGYNFATALEGALKIKEISYMHSEGILAGELKHGPLALVDENLPIIMIATRDAVYPKCQ 592 (670)
T ss_pred HHHHHHHHHHhcc-ceEEEecccccHHHHhhhhhhhheeeehhhchhhhcccccCceeEecCCCCEEEEEecCcccHHHH
Confidence 6788899988888 5999999999999999999888876 2333333345555566666666654444 46667779999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCCh
Q 019775 119 KVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTR 191 (336)
Q Consensus 119 ~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~ 191 (336)
.++++...|+..-|.|++.....-.......|.+|.... .. +.+.+ ..=+.+|.+.++..++.+.
T Consensus 593 na~qQv~aRkG~pIiic~~~~~~~~~~~~~~~~vP~tvD--Cl--Qgil~----viPlQLlsyhlav~rg~~v 657 (670)
T KOG1268|consen 593 NAIQQVTARKGRPIIICDKGDKEEQKAGNKTLEVPQTVD--CL--QGILN----VIPLQLLSYHLAVLRGINV 657 (670)
T ss_pred HHHHHHHhcCCCeEEEecCCCchhhcccceEEeCCchhh--hh--hhhhh----hhhHHHHHHHHHHHcCCCC
Confidence 999999999888888888877765566667788877644 22 22222 2334555666666666543
No 277
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=95.11 E-value=0.45 Score=40.68 Aligned_cols=69 Identities=14% Similarity=0.097 Sum_probs=49.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHH
Q 019775 102 DDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAI 181 (336)
Q Consensus 102 ~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~ 181 (336)
.|++|++.-..+ ..+++.|++.|++||++.+....| ...|+.|.... . +.-+.-+++.+|..
T Consensus 157 Pd~l~ViDp~~e----~iAv~EA~klgIPVvAlvDTn~dp--d~VD~~IP~Nd--d----------a~rsi~Li~~~lA~ 218 (252)
T COG0052 157 PDVLFVIDPRKE----KIAVKEANKLGIPVVALVDTNCDP--DGVDYVIPGND--D----------AIRSIALIYWLLAR 218 (252)
T ss_pred CCEEEEeCCcHh----HHHHHHHHHcCCCEEEEecCCCCC--ccCceeecCCC--h----------HHHHHHHHHHHHHH
Confidence 688888765443 456788999999999999976665 67788865533 3 44555677777777
Q ss_pred HHHhhcC
Q 019775 182 AMMGARN 188 (336)
Q Consensus 182 ~~~~~~~ 188 (336)
.+.+.++
T Consensus 219 ai~e~r~ 225 (252)
T COG0052 219 AILEGRG 225 (252)
T ss_pred HHHHHhc
Confidence 7777654
No 278
>CHL00067 rps2 ribosomal protein S2
Probab=95.09 E-value=0.99 Score=38.77 Aligned_cols=68 Identities=10% Similarity=0.176 Sum_probs=48.7
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHH
Q 019775 100 SSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTV 179 (336)
Q Consensus 100 ~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l 179 (336)
...|++|++....+. .++++|...|+++|+|++...+| ...|+.|.+... |.-+..+++..|
T Consensus 160 ~~P~~iiv~d~~~~~----~ai~Ea~~l~IPvIaivDTn~~p--~~idypIP~Ndd------------s~~si~li~~~l 221 (230)
T CHL00067 160 KLPDIVIIIDQQEEY----TALRECRKLGIPTISILDTNCDP--DLADIPIPANDD------------AIASIKLILNKL 221 (230)
T ss_pred cCCCEEEEeCCcccH----HHHHHHHHcCCCEEEEEeCCCCc--cccceeeecCCc------------hHHHHHHHHHHH
Confidence 457888888877654 67889999999999999976655 346777665443 445556777777
Q ss_pred HHHHHh
Q 019775 180 AIAMMG 185 (336)
Q Consensus 180 ~~~~~~ 185 (336)
..++..
T Consensus 222 ~~ai~~ 227 (230)
T CHL00067 222 TTAICE 227 (230)
T ss_pred HHHHHH
Confidence 666554
No 279
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=94.95 E-value=0.11 Score=49.25 Aligned_cols=84 Identities=13% Similarity=0.001 Sum_probs=63.6
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhh----hhHhhhcCCCCeeeCCCccH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFK----LTVGEMCNRSPRTIGPDAMA 296 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~----~~i~~~~~~~~~~v~~~~~l 296 (336)
.+.+++..++.++++.|++.+.....|+|+-|...|+||.+|++..+...-.+..+ ..+....... +.+....++
T Consensus 281 ~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~~~~~~-~~v~G~~~l 359 (429)
T COG1253 281 PLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQRDDDG-WLVDGRVPL 359 (429)
T ss_pred CeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcccccccccceEecCCc-EEEeccccH
Confidence 45899999999999999999999999999999999999999999988753221111 1222222334 668888888
Q ss_pred HHHHHHhcC
Q 019775 297 VEAMQKMES 305 (336)
Q Consensus 297 ~~~~~~~~~ 305 (336)
++..+.+.-
T Consensus 360 ~e~~~~l~~ 368 (429)
T COG1253 360 EELEELLGI 368 (429)
T ss_pred HHHHHHhCC
Confidence 888777654
No 280
>PRK09939 putative oxidoreductase; Provisional
Probab=94.64 E-value=0.5 Score=47.99 Aligned_cols=116 Identities=10% Similarity=0.123 Sum_probs=69.4
Q ss_pred hHHHHHHHHHH---cCCCeEEEEeccchHHHHHHHHHHHHh-cCCeeee-----cCCc--ccc---------ccccCCCC
Q 019775 41 PHTLTFTQTLL---KCRGTIFFTGVGKSGFVANKISQTLIS-LGIKSGF-----LNPL--DAL---------HGDIGILS 100 (336)
Q Consensus 41 ~~i~~~~~~i~---~a~~~I~i~G~G~s~~~a~~~~~~l~~-~g~~~~~-----~~~~--~~~---------~~~~~~~~ 100 (336)
+.++.+++.+. .. +.+.+|+.|.+..-+.++..+|.+ +|-+.+. +... ..+ ...+..+.
T Consensus 129 EAl~~Ia~~L~~i~~p-~~i~~y~sg~~snE~~yl~q~f~r~~Gtnn~~~~s~~C~~~~~~~l~~~~G~g~~t~~l~Di~ 207 (759)
T PRK09939 129 QAFDEIGARLQSYSDP-NQVEFYTSGRTSNEAAFLYQLFAREYGSNNFPDCSNMCHEPTSVGLAASIGVGKGTVLLEDFE 207 (759)
T ss_pred HHHHHHHHHHHhhcCC-CeEEEEeeCCchHHHHHHHHHHHHHhCCcccCCCCCCCchHHHHHHHHhcCCCCCCCCHHHHh
Confidence 34445555443 34 689999998877766666666654 3443221 1110 000 00111245
Q ss_pred CCcEEEEEeC-CCCc-HHHHHHHHHHHHcCCeEEEEeCCCCC-----------------ccccccCEEEEcCCCcc
Q 019775 101 SDDILVMFSK-SGNT-EELLKVVPCAKAKGAYLVSVTSVEGN-----------------ALAAVCDMNVHLPVERE 157 (336)
Q Consensus 101 ~~dlvi~iS~-sG~~-~~~~~~~~~ak~~g~~vi~IT~~~~s-----------------~l~~~ad~~i~~~~~~~ 157 (336)
.-|++|++.. .+.+ +.+...++.++++|+++|+|-....- .-++.||..+.+..+.+
T Consensus 208 ~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvIDPr~~~gl~rft~p~~~~~~~~~~ta~~Ad~~l~irPGtD 283 (759)
T PRK09939 208 KCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQERGLERFTAPQNPFEMLTNSETQLASAYYNVRIGGD 283 (759)
T ss_pred hCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEECCCCcccccccccccccchhccccchhhhCeeeCCCCChH
Confidence 6788888854 4443 44666678899999999999764321 13678999988876655
No 281
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=94.49 E-value=0.13 Score=46.97 Aligned_cols=58 Identities=22% Similarity=0.239 Sum_probs=51.6
Q ss_pred hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHH
Q 019775 208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTL 267 (336)
Q Consensus 208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~ 267 (336)
...+.++|.+.+ ++.+.+.++.++-+++.+++-..+||+|++|+++.++++.||.+..
T Consensus 170 ~~~~~~vmt~~~--~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~ 227 (503)
T KOG2550|consen 170 SLLVSDVMTKNP--VTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNR 227 (503)
T ss_pred cchhhhhccccc--ccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhc
Confidence 346788999985 4788899999999999999999999999999999999999998754
No 282
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=94.24 E-value=0.14 Score=49.20 Aligned_cols=55 Identities=22% Similarity=0.323 Sum_probs=48.3
Q ss_pred hhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHH
Q 019775 211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTL 267 (336)
Q Consensus 211 v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~ 267 (336)
...+|.|.+. +++.++++..+..+++..+.+++.|+++.++.+|++|++|+...-
T Consensus 692 l~p~~n~sPy--tV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~~ 746 (762)
T KOG0474|consen 692 LHPFMNPSPY--TVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARYR 746 (762)
T ss_pred cccccCCCCc--ccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhHH
Confidence 3556777754 899999999999999999999999999888999999999998644
No 283
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=93.84 E-value=2.2 Score=36.16 Aligned_cols=66 Identities=12% Similarity=0.179 Sum_probs=45.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHH
Q 019775 102 DDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAI 181 (336)
Q Consensus 102 ~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~ 181 (336)
.|++|++....+ ..++++|+..|+++|++++....| ...|+.|..... |..+..+++..|..
T Consensus 144 P~~vii~~~~~~----~~~i~Ea~~l~IP~i~i~Dtn~~~--~~i~ypIp~N~~------------s~~si~~i~~~l~~ 205 (211)
T PF00318_consen 144 PDLVIILDPNKN----KNAIREANKLNIPTIAIVDTNCNP--SLIDYPIPANDD------------SIKSIYLILNLLAK 205 (211)
T ss_dssp BSEEEESSTTTT----HHHHHHHHHTTS-EEEEESTTS-G--TTSSEEEES-SS------------SHHHHHHHHHHHHH
T ss_pred CcEEEEeccccc----chhHHHHHhcCceEEEeecCCCCc--cccceEeecCCc------------cHHHHHHHHHHHHH
Confidence 788887776544 567889999999999999875554 457888776443 44555677777766
Q ss_pred HHHh
Q 019775 182 AMMG 185 (336)
Q Consensus 182 ~~~~ 185 (336)
.+.+
T Consensus 206 ai~~ 209 (211)
T PF00318_consen 206 AILE 209 (211)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6554
No 284
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.42 E-value=0.39 Score=41.54 Aligned_cols=124 Identities=19% Similarity=0.245 Sum_probs=70.5
Q ss_pred HHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHHHhhc---C
Q 019775 122 PCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAAN---H 198 (336)
Q Consensus 122 ~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~~~~~---~ 198 (336)
+.=++.|.++|.+|.. -....+++|-...+..+.-. .+. .+- .+ ... -+.+|++. .
T Consensus 180 ~lq~~l~kTivfVTHD-idEA~kLadri~vm~~G~i~-Q~~-~P~------~i---------l~~---Pan~FV~~f~g~ 238 (309)
T COG1125 180 ELQKELGKTIVFVTHD-IDEALKLADRIAVMDAGEIV-QYD-TPD------EI---------LAN---PANDFVEDFFGE 238 (309)
T ss_pred HHHHHhCCEEEEEecC-HHHHHhhhceEEEecCCeEE-EeC-CHH------HH---------HhC---ccHHHHHHHhcc
Confidence 4445568889999975 44555889988877665421 110 000 00 000 01222211 1
Q ss_pred CCCchhhhhhhhhhhccccCCC--CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHH
Q 019775 199 PAGRIGKSLIFKVQDVMKPQKE--LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRT 266 (336)
Q Consensus 199 ~~~~~~~~~~~~v~~im~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~ 266 (336)
...........++.+.|.+... --.+.....-.+++..+...+.+.+||+|++|+++|.+|..+|...
T Consensus 239 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 239 SERGLRLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred ccccccccchhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 1111122234455666665321 0023344455667777888888999999999999999999998753
No 285
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=93.42 E-value=0.42 Score=43.35 Aligned_cols=92 Identities=20% Similarity=0.189 Sum_probs=60.9
Q ss_pred hhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCC--CCee
Q 019775 212 QDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNR--SPRT 289 (336)
Q Consensus 212 ~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~--~~~~ 289 (336)
.++++-..+...++.+.++.+.+..|.+++-..-.|+|+=|.+.|+||.+|++..+...-.+.......++... .-..
T Consensus 268 ~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdftde~d~~~~ev~~q~dgs~i 347 (423)
T COG4536 268 EDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTDEHDTLAKEVIPQSDGSFI 347 (423)
T ss_pred hHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhccccccCcccchhhcccCCCcEE
Confidence 34444333344689999999999999999888889999989999999999999987642211111222222211 1244
Q ss_pred eCCCccHHHHHHHh
Q 019775 290 IGPDAMAVEAMQKM 303 (336)
Q Consensus 290 v~~~~~l~~~~~~~ 303 (336)
+..+.++.|+-+.|
T Consensus 348 idGs~~iRdlNr~l 361 (423)
T COG4536 348 IDGSANVRDLNRAL 361 (423)
T ss_pred EeCCCcHHHHHHhc
Confidence 66666666665444
No 286
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.19 E-value=0.66 Score=40.19 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=55.9
Q ss_pred ceEEEEcCCCcEEEEeeHHHHHHHH--------HhcCCc----hhhhhHhhhcCCCC----eeeCCCccHHHHHHHhcCC
Q 019775 243 GCLLVIDEEYHLIGTFTDGDLRRTL--------KASGEG----IFKLTVGEMCNRSP----RTIGPDAMAVEAMQKMESP 306 (336)
Q Consensus 243 ~~ipVvd~~~~~~G~it~~dl~~~~--------~~~~~~----~~~~~i~~~~~~~~----~~v~~~~~l~~~~~~~~~~ 306 (336)
+.+.|.+ +|+++-+-+...++..- ...... .....+.+.+.+.. ..+.......+++..+...
T Consensus 204 dri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~ 282 (309)
T COG1125 204 DRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLAR 282 (309)
T ss_pred ceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCCccccchhhHHHHHHHHhc
Confidence 3466666 68899999977776522 111111 11234444443322 1233344555566666666
Q ss_pred CCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775 307 PSPVQFLPVINRQNILIGIVTLHGLVSA 334 (336)
Q Consensus 307 ~~~~~~l~Vv~~~~~~iGiit~~di~~~ 334 (336)
+...+||+|++|+++|.||+.+++..
T Consensus 283 --~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 283 --GRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred --CCceeEEECCCCcEeeEEEHHHHhhh
Confidence 78899999999999999999999863
No 287
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=92.66 E-value=0.88 Score=33.23 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=57.7
Q ss_pred eEEEEeccchHHHHHHHHHHHHhcCCeeeec--CCcccccc--ccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeE
Q 019775 56 TIFFTGVGKSGFVANKISQTLISLGIKSGFL--NPLDALHG--DIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYL 131 (336)
Q Consensus 56 ~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~--~~~~~~~~--~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~v 131 (336)
+|.++|.-. .. -..+...+.+.|...... .+...-.. ....+.+-|++|+++..=.+..+..+-+.||+.|.++
T Consensus 1 ~vliVGG~~-~~-~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~ 78 (97)
T PF10087_consen 1 SVLIVGGRE-DR-ERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPI 78 (97)
T ss_pred CEEEEcCCc-cc-HHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcE
Confidence 366777411 11 233466777788888877 22222221 3446778899999999999999999999999999999
Q ss_pred EEEeCCCCC
Q 019775 132 VSVTSVEGN 140 (336)
Q Consensus 132 i~IT~~~~s 140 (336)
+..-+..-+
T Consensus 79 ~~~~~~~~~ 87 (97)
T PF10087_consen 79 IYSRSRGVS 87 (97)
T ss_pred EEECCCCHH
Confidence 987644333
No 288
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=92.23 E-value=1.4 Score=35.88 Aligned_cols=102 Identities=8% Similarity=0.022 Sum_probs=62.4
Q ss_pred HHHHHHHHcCCCeEEEEeccchH--HHHHHHHHHHHhcCCeeeecCC------ccccccccCC---------------C-
Q 019775 44 LTFTQTLLKCRGTIFFTGVGKSG--FVANKISQTLISLGIKSGFLNP------LDALHGDIGI---------------L- 99 (336)
Q Consensus 44 ~~~~~~i~~a~~~I~i~G~G~s~--~~a~~~~~~l~~~g~~~~~~~~------~~~~~~~~~~---------------~- 99 (336)
+.++++|.+|++-++++|.|... ...+.+.....+.+.++..-.. .........+ +
T Consensus 25 ~~aa~lI~~AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~~~~~lg~lg~~~~~p~~e~~~ 104 (171)
T PRK00945 25 KIAAMMIKKAKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGSYKGLIDKGVDAKYINLHELTNYLKDPNWKGLD 104 (171)
T ss_pred HHHHHHHHhCCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccccccccccCCccCCcccHHHHHhhccCchhhhhc
Confidence 56778888887788888988765 3444455555556887765443 1111100001 2
Q ss_pred --CCCcEEEEEe-CCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEE
Q 019775 100 --SSDDILVMFS-KSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVH 151 (336)
Q Consensus 100 --~~~dlvi~iS-~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~ 151 (336)
..-|++|++- .-.....+++.+|.... .++|+|+..- .+.||+.+.
T Consensus 105 g~~~~DlvlfvG~~~~~~~~~l~~lk~f~~--~~~~~~~~~y----~~~a~~s~~ 153 (171)
T PRK00945 105 GNGNYDLVIFIGVTYYYASQGLSALKHFSP--LKTITIDRYY----HPNADMSFP 153 (171)
T ss_pred CCCCcCEEEEecCCchhHHHHHHHHhhcCC--ceEEEecCCc----CCCCceecC
Confidence 4668877774 34455667777776654 8899998542 556777763
No 289
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=92.21 E-value=0.28 Score=47.13 Aligned_cols=120 Identities=18% Similarity=0.201 Sum_probs=83.1
Q ss_pred hhhhhhccccCCCCccccCCCcHH-HHHHHHHhcCcceEEEEcCCC-cEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCC
Q 019775 208 IFKVQDVMKPQKELPVCKEGDLIM-DQLVELTSKGCGCLLVIDEEY-HLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNR 285 (336)
Q Consensus 208 ~~~v~~im~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~ipVvd~~~-~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~ 285 (336)
...++++|.|-..+..+..+..+. +.+....+++++.+||.+.+. ..+|.+-...+........ .....++..++..
T Consensus 203 ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~~-~~~~~~v~~~~~~ 281 (498)
T KOG2118|consen 203 EKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVEV-PLEPLPVSESALL 281 (498)
T ss_pred HHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhcccc-ccccccchhhhcc
Confidence 567899999976655666666665 777788899999999998542 2344433333333332211 1224567777777
Q ss_pred CCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhH
Q 019775 286 SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGL 331 (336)
Q Consensus 286 ~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di 331 (336)
....+++++++.+.++.|++. +. ++.|+.+...-+|+++..|+
T Consensus 282 ~l~~vp~~~~~~~~l~~~~~~--~~-H~~~v~~~~~~~~~~~l~~~ 324 (498)
T KOG2118|consen 282 RLPLVPENMPLLDLLNEFQKG--KS-HMAVVRNGHVDIFVLTLEDL 324 (498)
T ss_pred ccccCCCcccHHHHHHHHhhh--hc-eeEEEecCCcceeeEeccch
Confidence 778899999999999999987 44 55555454668899998886
No 290
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=92.14 E-value=2.1 Score=45.02 Aligned_cols=85 Identities=18% Similarity=0.266 Sum_probs=56.5
Q ss_pred CCCCcEEEEEeCC-CCc-HHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHH
Q 019775 99 LSSDDILVMFSKS-GNT-EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFG 176 (336)
Q Consensus 99 ~~~~dlvi~iS~s-G~~-~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~ 176 (336)
+..-|++|++... ..+ +....-+..+|++|+++|+|-. ..+..+..||..+.+..+++ ..++
T Consensus 219 i~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~GakiIvIDP-R~t~tA~~AD~~l~irPGTD---------------~AL~ 282 (1009)
T TIGR01553 219 IKNSDLILVMGGNPAENHPIGFKWAIRAKKKGAKIIHIDP-RFNRTATVADLYAPIRSGSD---------------IAFL 282 (1009)
T ss_pred HHhCCEEEEECCChhhhChHHHHHHHHHHHcCCEEEEEcC-CCCchhHhhccEeCCCCChH---------------HHHH
Confidence 4556888888544 333 3345566788999999999965 56788899999998877766 4555
Q ss_pred HHHHHHHHhhcCCChHHHhhcCCC
Q 019775 177 DTVAIAMMGARNLTRDEYAANHPA 200 (336)
Q Consensus 177 d~l~~~~~~~~~~~~~~~~~~~~~ 200 (336)
..|+..++++... .++|.+.+.+
T Consensus 283 ~am~~~Ii~e~l~-D~~Fv~~~T~ 305 (1009)
T TIGR01553 283 NGMIKYILEKELY-QKEYVVNYTN 305 (1009)
T ss_pred HHHHHHHHHCCCc-cHHHHHHHcC
Confidence 5555555555432 3345444433
No 291
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=91.76 E-value=0.4 Score=44.57 Aligned_cols=46 Identities=20% Similarity=0.367 Sum_probs=40.2
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK 268 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~ 268 (336)
++++++++++.+++..+.+.++. ++|+|+ |+++|+|+..+++..+.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 335 PTVINPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred CcccCCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHHHh
Confidence 45899999999999999887754 888885 99999999999998764
No 292
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=90.59 E-value=3.6 Score=41.41 Aligned_cols=58 Identities=16% Similarity=0.324 Sum_probs=41.7
Q ss_pred CCCCcEEEEEeCCC-C-cHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775 99 LSSDDILVMFSKSG-N-TEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE 157 (336)
Q Consensus 99 ~~~~dlvi~iS~sG-~-~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~ 157 (336)
+..-|++|++...- . .+.....++.++++|+++|.|-. ..+..+..||..|.+..+.+
T Consensus 153 i~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvidp-~~s~ta~~ad~~i~i~Pgtd 212 (671)
T TIGR01591 153 IENADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVIDP-RKTETAKIADLHIPLKPGTD 212 (671)
T ss_pred HHhCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEECC-CCChhhHhhCcccCCCCCcH
Confidence 44568888885432 2 23455667888899999999965 56777888999988877655
No 293
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=90.49 E-value=5.6 Score=38.59 Aligned_cols=58 Identities=17% Similarity=0.326 Sum_probs=41.8
Q ss_pred CCCCcEEEEEeCCCC--cHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775 99 LSSDDILVMFSKSGN--TEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE 157 (336)
Q Consensus 99 ~~~~dlvi~iS~sG~--~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~ 157 (336)
+..-|++|++...-. .+....-+..++++|+++|.|-.. .++.+..||..|.+.-+.+
T Consensus 154 ~~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~-~s~ta~~Ad~~l~i~PGtD 213 (512)
T cd02753 154 IEEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPR-RTELARFADLHLQLRPGTD 213 (512)
T ss_pred HHhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCC-CccchHhhCeeeCCCCCcH
Confidence 456688888865432 233445567788999999999975 5666788999988866655
No 294
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=90.37 E-value=6.7 Score=37.69 Aligned_cols=59 Identities=19% Similarity=0.142 Sum_probs=42.7
Q ss_pred CCCCCcEEEEEeCCCCcH---HHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775 98 ILSSDDILVMFSKSGNTE---ELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE 157 (336)
Q Consensus 98 ~~~~~dlvi~iS~sG~~~---~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~ 157 (336)
.+..-|++|++...-... .....+..++++|+++|+|-.. .+..+..||..+.+..+.+
T Consensus 157 d~~~ad~Il~~G~n~~~~~~~~~~~~~~~ar~~g~klividpr-~s~ta~~Ad~~l~i~PGtD 218 (477)
T cd02759 157 DWENPECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVDPR-LTWLAARADLWLPIRPGTD 218 (477)
T ss_pred hhhcCCEEEEEccChhhhCcHHHHHHHHHHHHCCCEEEEECCC-CChhhHhhCeeeccCCCcH
Confidence 345668888886543322 3445566788899999999764 6777899999998876655
No 295
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=90.22 E-value=1.7 Score=33.94 Aligned_cols=107 Identities=15% Similarity=0.157 Sum_probs=57.4
Q ss_pred HHHHHHHHHHcCC--CeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCcc---------cc---ccccCCC--CCCcEE
Q 019775 42 HTLTFTQTLLKCR--GTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLD---------AL---HGDIGIL--SSDDIL 105 (336)
Q Consensus 42 ~i~~~~~~i~~a~--~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~---------~~---~~~~~~~--~~~dlv 105 (336)
+++++.+.+.+.+ .++++||. ........+...|...|+.+...+... +. ...+... .+-|.+
T Consensus 21 ~~~~l~~~i~~~~~~~~~~~y~~-~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~k~~~D~~l~~d~~~~~~~~~~d~i 99 (146)
T PF01936_consen 21 DFERLLEEIRKYGPLVRIRAYGN-WDDPNQKSFQEALQRAGIKVRHFPLRKRGGGGKKGVDVALAVDILELAYENPPDTI 99 (146)
T ss_dssp -HHHHHHHHTTTEEEEEEEEEE-----HHHHHHHHHHHHHT-EEEE------S---S---HHHHHHHHHHHG--GG-SEE
T ss_pred CHHHHHHHHHhcCCeEEEEEEee-ccccchhhHHHHHHhCeeeEEeeecccccccccCCcHHHHHHHHHHHhhccCCCEE
Confidence 5667777776652 13455554 122334556688888899776654210 00 0111112 334999
Q ss_pred EEEeCCCCcHHHHHHHHHHHHcCCeEEEEe--CCCCCccccccCEEEEc
Q 019775 106 VMFSKSGNTEELLKVVPCAKAKGAYLVSVT--SVEGNALAAVCDMNVHL 152 (336)
Q Consensus 106 i~iS~sG~~~~~~~~~~~ak~~g~~vi~IT--~~~~s~l~~~ad~~i~~ 152 (336)
+++|.. .+...+++.++++|.+|++++ +.....|.+.||..+.+
T Consensus 100 vLvSgD---~Df~~~v~~l~~~g~~V~v~~~~~~~s~~L~~~ad~f~~~ 145 (146)
T PF01936_consen 100 VLVSGD---SDFAPLVRKLRERGKRVIVVGAEDSASEALRSAADEFISI 145 (146)
T ss_dssp EEE------GGGHHHHHHHHHH--EEEEEE-GGGS-HHHHHHSSEEEE-
T ss_pred EEEECc---HHHHHHHHHHHHcCCEEEEEEeCCCCCHHHHHhcCEEEeC
Confidence 999887 457788888899999888887 45666788888887754
No 296
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=90.13 E-value=3.7 Score=32.98 Aligned_cols=82 Identities=16% Similarity=0.272 Sum_probs=55.3
Q ss_pred HHHHHHHhcCCeeeecCCcccccc---ccCCC--CCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCC--CCccc
Q 019775 71 KISQTLISLGIKSGFLNPLDALHG---DIGIL--SSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVE--GNALA 143 (336)
Q Consensus 71 ~~~~~l~~~g~~~~~~~~~~~~~~---~~~~~--~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~--~s~l~ 143 (336)
.|...|...|+..+...+..++.. .+..+ ..=|.++++|..|. ...+++.+|++|..|+++.... ...+.
T Consensus 70 ~l~~~l~~~Gf~pv~~kG~~Dv~laIDame~~~~~~iD~~vLvSgD~D---F~~Lv~~lre~G~~V~v~g~~~~ts~~L~ 146 (160)
T TIGR00288 70 KLIEAVVNQGFEPIIVAGDVDVRMAVEAMELIYNPNIDAVALVTRDAD---FLPVINKAKENGKETIVIGAEPGFSTALQ 146 (160)
T ss_pred HHHHHHHHCCceEEEecCcccHHHHHHHHHHhccCCCCEEEEEeccHh---HHHHHHHHHHCCCEEEEEeCCCCChHHHH
Confidence 467788888999765443222211 12122 44588999988765 4567778889999999999432 33688
Q ss_pred cccCEEEEcCCC
Q 019775 144 AVCDMNVHLPVE 155 (336)
Q Consensus 144 ~~ad~~i~~~~~ 155 (336)
+.||..+.+..+
T Consensus 147 ~acd~FI~L~~~ 158 (160)
T TIGR00288 147 NSADIAIILGEE 158 (160)
T ss_pred HhcCeEEeCCCC
Confidence 899988887654
No 297
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=89.91 E-value=6.8 Score=38.52 Aligned_cols=58 Identities=14% Similarity=0.226 Sum_probs=41.0
Q ss_pred CCCCcEEEEEeCCCCcH--HHHHHHHHHHHc--CCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775 99 LSSDDILVMFSKSGNTE--ELLKVVPCAKAK--GAYLVSVTSVEGNALAAVCDMNVHLPVERE 157 (336)
Q Consensus 99 ~~~~dlvi~iS~sG~~~--~~~~~~~~ak~~--g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~ 157 (336)
+..-|++|++....... .....+..++++ |+++|+|-. ..++.+..||..+.+..+++
T Consensus 155 i~~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP-~~t~ta~~Ad~~l~i~PGtD 216 (565)
T cd02754 155 IEHADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDP-RRTRTADIADLHLPIRPGTD 216 (565)
T ss_pred HhhCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcC-CCCcchHHhCeeeCCCCCcc
Confidence 45568888886654332 333456677777 999999976 46777888999988876655
No 298
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=89.78 E-value=6.7 Score=37.54 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=41.0
Q ss_pred CCCCcEEEEEeCCC-CcH-HHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775 99 LSSDDILVMFSKSG-NTE-ELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE 157 (336)
Q Consensus 99 ~~~~dlvi~iS~sG-~~~-~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~ 157 (336)
+..-|++|++.... .+. .....+..+|++|+++|+|-. ..++.+..||..+.+..+++
T Consensus 168 ~~~ad~il~~G~N~~~~~~~~~~~l~~ar~~GaklividP-r~s~ta~~Ad~~l~i~PGtD 227 (461)
T cd02750 168 WYNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSP-DYSPSAKHADLWVPIKPGTD 227 (461)
T ss_pred HhcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEcC-CCCcchhhcCEEeccCCCcH
Confidence 45568888885543 221 122345568999999999965 56888899999998876655
No 299
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=89.72 E-value=5.4 Score=41.30 Aligned_cols=85 Identities=8% Similarity=0.146 Sum_probs=51.6
Q ss_pred CCCCcEEEEEeCCC-CcH-HHHHHHHHH--HHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHH
Q 019775 99 LSSDDILVMFSKSG-NTE-ELLKVVPCA--KAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMV 174 (336)
Q Consensus 99 ~~~~dlvi~iS~sG-~~~-~~~~~~~~a--k~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~ 174 (336)
+..-|++|++.... .+. ....-+..+ +++|+++|+|-. ..++.+..||..+.+..+++ ..
T Consensus 204 i~~a~~il~~G~Np~~~~p~~~~~i~~a~~~~~G~kiiviDP-r~t~ta~~ad~~l~irPGtD---------------~a 267 (830)
T PRK13532 204 IEAADAFVLWGSNMAEMHPILWSRVTDRRLSNPDVKVAVLST-FEHRSFELADNGIIFTPQTD---------------LA 267 (830)
T ss_pred HHhCCEEEEECCCchhcCcHHHHHHHHHHhcCCCCeEEEECC-CCCchhHhcCeeeccCCCCc---------------HH
Confidence 34568888886543 221 111222223 358999999965 46778889999998877766 44
Q ss_pred HHHHHHHHHHhhcCCChHHHhhcCCC
Q 019775 175 FGDTVAIAMMGARNLTRDEYAANHPA 200 (336)
Q Consensus 175 l~d~l~~~~~~~~~~~~~~~~~~~~~ 200 (336)
++..++..++.+... ..+|.+.+..
T Consensus 268 l~~am~~~ii~~~~~-D~~Fv~~~t~ 292 (830)
T PRK13532 268 ILNYIANYIIQNNAV-NWDFVNKHTN 292 (830)
T ss_pred HHHHHHHHHHHCCcc-cHHHHHHHhc
Confidence 555555555555433 3455555443
No 300
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=89.58 E-value=8.8 Score=36.64 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=42.3
Q ss_pred CCCCCcEEEEEeCC-CCcH--HHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775 98 ILSSDDILVMFSKS-GNTE--ELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE 157 (336)
Q Consensus 98 ~~~~~dlvi~iS~s-G~~~--~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~ 157 (336)
.+..-|++|++... ..+. ....-+..++++|+++|+|-.. .++.+..||..+.+..+.+
T Consensus 153 d~~~ad~il~~G~n~~~~~~~~~~~~~~~a~~~g~kiivIdPr-~t~ta~~AD~~i~i~PGtD 214 (454)
T cd02755 153 DFENARYIILFGRNLAEAIIVVDARRLMKALENGAKVVVVDPR-FSELASKADEWIPIKPGTD 214 (454)
T ss_pred chhcCCEEEEECcCcccccccHHHHHHHHHHHCCCeEEEECCC-CChhhHhhCEecCCCCCcH
Confidence 45566888888544 3332 1345566788899999999875 6777889999998877655
No 301
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=89.42 E-value=9.9 Score=37.18 Aligned_cols=59 Identities=15% Similarity=0.259 Sum_probs=41.6
Q ss_pred CCCCCcEEEEEeCC-CCcH-------HHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775 98 ILSSDDILVMFSKS-GNTE-------ELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE 157 (336)
Q Consensus 98 ~~~~~dlvi~iS~s-G~~~-------~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~ 157 (336)
.+..-|++|++-.. ..+. .....++.++++|+++|+|-. ..++.+..||..+.+..+++
T Consensus 153 D~~~ad~il~~G~N~~~s~~~~~~~~~~~~~~~~a~~~G~kliviDP-r~t~ta~~AD~~l~irPGtD 219 (539)
T cd02762 153 DIDRTDYLLILGANPLQSNGSLRTAPDRVLRLKAAKDRGGSLVVIDP-RRTETAKLADEHLFVRPGTD 219 (539)
T ss_pred hhhhCCEEEEEecChHhhCCccccccCHHHHHHHHHhCCCEEEEECC-CCchhhHhcCEeeCcCCCcH
Confidence 34556888888543 2221 122356778999999999966 56777889999999877766
No 302
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=88.85 E-value=1.6 Score=34.86 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=25.4
Q ss_pred CCCcEEEEEeCCCC-cHHHHHHHHHHHHcCCeEEE
Q 019775 100 SSDDILVMFSKSGN-TEELLKVVPCAKAKGAYLVS 133 (336)
Q Consensus 100 ~~~dlvi~iS~sG~-~~~~~~~~~~ak~~g~~vi~ 133 (336)
-.+|++++.-..|. .+-+..++++|+++|+++|+
T Consensus 105 l~gDVvvi~IAGGdT~PvTaaii~ya~~rG~~Tis 139 (217)
T COG4015 105 LKGDVVVICIAGGDTIPVTAAIINYAKERGIKTIS 139 (217)
T ss_pred hcCCEEEEEecCCCcchhHHHHHHHHHHcCceEee
Confidence 35576555555555 57788889999999999886
No 303
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=88.78 E-value=7.3 Score=37.76 Aligned_cols=58 Identities=19% Similarity=0.405 Sum_probs=42.8
Q ss_pred CCCCcEEEEEeCC-CC-cHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775 99 LSSDDILVMFSKS-GN-TEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE 157 (336)
Q Consensus 99 ~~~~dlvi~iS~s-G~-~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~ 157 (336)
+..-|++|++... .. ++.....+..++++|+++|+|-. ..++.+..||..+.+..+++
T Consensus 155 ~~~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvDP-r~t~ta~~Ad~~l~i~PGtD 214 (501)
T cd02766 155 MVNADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDP-YRTATAARADLHIQIRPGTD 214 (501)
T ss_pred HhcCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEECC-CCCccHHHhCeeeccCCCcH
Confidence 4566788888543 33 23444556779999999999965 57788899999999877766
No 304
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=88.32 E-value=6.4 Score=39.39 Aligned_cols=59 Identities=22% Similarity=0.256 Sum_probs=40.5
Q ss_pred CCCCCcEEEEEeCC-CCc-HHHHHHHHHHHHc-CCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775 98 ILSSDDILVMFSKS-GNT-EELLKVVPCAKAK-GAYLVSVTSVEGNALAAVCDMNVHLPVERE 157 (336)
Q Consensus 98 ~~~~~dlvi~iS~s-G~~-~~~~~~~~~ak~~-g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~ 157 (336)
.+..-|++|++... ..+ +....-+..|+++ |+++|+|-.. .+..+..||+.+.+..+.+
T Consensus 166 Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR-~t~Ta~~AD~~l~irPGTD 227 (649)
T cd02752 166 DIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPR-FTRTAAKADLYVPIRSGTD 227 (649)
T ss_pred HHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCC-CCchhHhcCEeeCcCCChH
Confidence 35567888888543 322 3333445667776 9999999875 6667789999998877655
No 305
>KOG2446 consensus Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=88.29 E-value=2.3 Score=39.42 Aligned_cols=86 Identities=17% Similarity=0.264 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHcCC---------CeEEEEeccchHHHHHHHHHHHHhc---CCeeeecC--CccccccccCCCCCC-cEE
Q 019775 41 PHTLTFTQTLLKCR---------GTIFFTGVGKSGFVANKISQTLISL---GIKSGFLN--PLDALHGDIGILSSD-DIL 105 (336)
Q Consensus 41 ~~i~~~~~~i~~a~---------~~I~i~G~G~s~~~a~~~~~~l~~~---g~~~~~~~--~~~~~~~~~~~~~~~-dlv 105 (336)
+.+.++++.+.+-+ .-|.=+|.|.|..=-.+....|.-. |..++++. |+..+...+..++++ .++
T Consensus 128 ~~ikeFsd~i~SG~w~g~tgk~itdVvnIGIGGSdLGP~mVteALk~y~~~gl~~~FvsNiD~t~ia~~~~kl~pEttLf 207 (546)
T KOG2446|consen 128 DHIKEFSDDIRSGSWKGYTGKKITDVVNIGIGGSDLGPLMVTEALKPYGPGGLEVHFVSNIDGTHIAEVLKKLNPETTLF 207 (546)
T ss_pred HHHHHHHHHhhcCCCCCCCCCeeeeEEEecccccccchHHHHHhhccCCCCCceEEEEecCCchhHHHHHhccCccceEE
Confidence 45677788876431 3577889999985444555555544 57788877 556666667777665 578
Q ss_pred EEEeCCCCcHHHHHHHHHHHH
Q 019775 106 VMFSKSGNTEELLKVVPCAKA 126 (336)
Q Consensus 106 i~iS~sG~~~~~~~~~~~ak~ 126 (336)
|++|.++.|.|++..++.+|+
T Consensus 208 iVaSKTftT~ETitnaetak~ 228 (546)
T KOG2446|consen 208 IVASKTFTTAETITNAETAKE 228 (546)
T ss_pred EEEecCcCcHHHHhhHHHHHH
Confidence 889999999999999998887
No 306
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=88.23 E-value=0.93 Score=43.86 Aligned_cols=64 Identities=16% Similarity=0.134 Sum_probs=53.6
Q ss_pred CchhhhhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHH
Q 019775 201 GRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTL 267 (336)
Q Consensus 201 ~~~~~~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~ 267 (336)
...+.+.+...+++|...+- ++....+++-+++++++.+.+++.|.. +|++.|+||.+|++...
T Consensus 631 ~~~~~~~~~~lk~il~~tp~--tv~d~tp~~~v~~~F~~lg~~~~~v~~-~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 631 AVAGIPSRLDLKDILDMTPF--TVTDLTPMETVVDLFRKLGLRQILVTK-NGILLGIITKKDCLRHT 694 (696)
T ss_pred ccCCCCCCcCceeeccCCcc--cccccCcHHHHHHHHHhhCceEEEEcc-CCeeEeeeehHHHHHhh
Confidence 34455567788899988754 899999999999999999999998875 89999999999998754
No 307
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=88.17 E-value=4.3 Score=30.75 Aligned_cols=79 Identities=16% Similarity=0.158 Sum_probs=50.5
Q ss_pred EEEeccchHHHHHHHHHHHHhc--CCeeeecCCccccccccCCCCCCcEEEEEeCCCCc-H---HHHHHHHHHHHcCCe-
Q 019775 58 FFTGVGKSGFVANKISQTLISL--GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNT-E---ELLKVVPCAKAKGAY- 130 (336)
Q Consensus 58 ~i~G~G~s~~~a~~~~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~-~---~~~~~~~~ak~~g~~- 130 (336)
.+++..++..+|+.++..|... ...+.-+++++........+...|++|+-|..... . +++-++..+|+.|++
T Consensus 2 ~I~~g~~~~~La~~ia~~L~~~~~~~~~~~F~dGE~~v~i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~ 81 (116)
T PF13793_consen 2 VIFSGSSSQDLAERIAEALGIPLGKVETKRFPDGETYVRIPESVRGKDVFIIQSTSPPVNDNLMELLLLIDALRRAGAKR 81 (116)
T ss_dssp EEEESSSGHHHHHHHHHHTTS-EE-EEEEE-TTS-EEEEESS--TTSEEEEE---SSSHHHHHHHHHHHHHHHHHTTBSE
T ss_pred EEEECCCCHHHHHHHHHHhCCceeeeEEEEcCCCCEEEEecccccCCceEEEEecCCchhHHHHHHHHHHHHHHHcCCcE
Confidence 5778888889999999998754 33334466777766666677888999999988762 3 345557888888875
Q ss_pred EEEEeC
Q 019775 131 LVSVTS 136 (336)
Q Consensus 131 vi~IT~ 136 (336)
|.+|-.
T Consensus 82 i~~ViP 87 (116)
T PF13793_consen 82 ITLVIP 87 (116)
T ss_dssp EEEEES
T ss_pred EEEecc
Confidence 555553
No 308
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=88.15 E-value=7.6 Score=40.69 Aligned_cols=58 Identities=19% Similarity=0.235 Sum_probs=41.0
Q ss_pred CCCCcEEEEEeCC-CCc-HHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775 99 LSSDDILVMFSKS-GNT-EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE 157 (336)
Q Consensus 99 ~~~~dlvi~iS~s-G~~-~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~ 157 (336)
+..-|++|++... ..+ ......+..|+++|+++|+|-. ..++.++.||..+.+..+++
T Consensus 222 ~~na~~Il~~G~Np~~t~~~~~~~l~~a~~~GaklVvIdP-r~t~tA~~AD~wlpirPGTD 281 (912)
T TIGR03479 222 WFNADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIAP-DYNPSTIHADLWLPVRVGTD 281 (912)
T ss_pred hhcCcEEEEecCChHHcCCchHHHHHHHHhcCCeEEEECC-CCChhhhhCCeecCCCCCcH
Confidence 3456777777443 333 2234556678899999999965 57788899999998877666
No 309
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=87.99 E-value=7.8 Score=36.76 Aligned_cols=112 Identities=17% Similarity=0.151 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHH-----------------------HHHHhcCCeeeecCCccccccccC
Q 019775 41 PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKIS-----------------------QTLISLGIKSGFLNPLDALHGDIG 97 (336)
Q Consensus 41 ~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~-----------------------~~l~~~g~~~~~~~~~~~~~~~~~ 97 (336)
+.+++.+..+..+ ....+++.|.+...+-.++ ..+.++|..+.++....+......
T Consensus 64 ~~lE~~la~leg~-~~av~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l~~ 142 (432)
T PRK06702 64 AAFEQKLAELEGG-VGAVATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVA 142 (432)
T ss_pred HHHHHHHHHHhCC-CcEEEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH
Confidence 4566666666666 3677777777664432221 114556777766643111111122
Q ss_pred CCCCCcEEEEEeCCCCcH----HHHHHHHHHHHcCCeEEEEeCCC------CCccccccCEEEEcCCC
Q 019775 98 ILSSDDILVMFSKSGNTE----ELLKVVPCAKAKGAYLVSVTSVE------GNALAAVCDMNVHLPVE 155 (336)
Q Consensus 98 ~~~~~dlvi~iS~sG~~~----~~~~~~~~ak~~g~~vi~IT~~~------~s~l~~~ad~~i~~~~~ 155 (336)
.++++.-+|++-..|+.. ++-++++.|+++|+.+|. ++. ..|+..-||+++..-+.
T Consensus 143 ~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~liv--D~T~~tP~~~~pl~~GADIvv~S~TK 208 (432)
T PRK06702 143 LANDKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIV--DNTLATPYLCQAFEHGANIIVHSTTK 208 (432)
T ss_pred hCCcCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEE--ECCCCchhhCChhhcCCCEEEEcccc
Confidence 344544455566678777 899999999999987754 332 44666668988876543
No 310
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=87.85 E-value=9.4 Score=37.62 Aligned_cols=85 Identities=12% Similarity=0.120 Sum_probs=55.8
Q ss_pred CCCCcEEEEEeCCC-Cc-HHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHH
Q 019775 99 LSSDDILVMFSKSG-NT-EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFG 176 (336)
Q Consensus 99 ~~~~dlvi~iS~sG-~~-~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~ 176 (336)
+..-|++|++...- .+ ......+..++++|+++|+|-.. .++.+..||..+.+..+++ ..++
T Consensus 157 ~~~ad~il~~G~Np~~s~~~~~~~~~~a~~~GakliviDPr-~s~ta~~Ad~~l~irPGTD---------------~al~ 220 (567)
T cd02765 157 WVNAKTIIIWGSNILETQFQDAEFFLDARENGAKIVVIDPV-YSTTAAKADQWVPIRPGTD---------------PALA 220 (567)
T ss_pred HhcCcEEEEECCChHHccchhHHHHHHHHHcCCeEEEECCC-CCcchhhcCEEeccCCCch---------------HHHH
Confidence 34568888886653 22 23455667889999999999664 6777889999998877666 3444
Q ss_pred HHHHHHHHhhcCCChHHHhhcCCC
Q 019775 177 DTVAIAMMGARNLTRDEYAANHPA 200 (336)
Q Consensus 177 d~l~~~~~~~~~~~~~~~~~~~~~ 200 (336)
..++..+.++. .-.++|.+.+.+
T Consensus 221 ~am~~~ii~~~-l~D~~Fi~~~t~ 243 (567)
T cd02765 221 LGMINYILEHN-WYDEAFLKSNTS 243 (567)
T ss_pred HHHHHHHHhcC-cccHHHHHhcCC
Confidence 44444455543 333456665543
No 311
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=87.63 E-value=1.6 Score=37.16 Aligned_cols=93 Identities=15% Similarity=0.147 Sum_probs=64.8
Q ss_pred hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCch----hhhhHhhhcCC
Q 019775 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGI----FKLTVGEMCNR 285 (336)
Q Consensus 210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~----~~~~i~~~~~~ 285 (336)
.+.++.+| .+.++....+.-.++.|+.+++.-..|+|+=|.+-|+||.+|++..+...-++. ....+..+..
T Consensus 134 ~i~~lLRP---av~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIEDE~Deee~~dI~~ls~- 209 (293)
T COG4535 134 DIKELLRP---AVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIEDEYDEEEDADIRQLSR- 209 (293)
T ss_pred cHHHhccc---ceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcccccccchhhhhhhHhhcC-
Confidence 45566677 457899999999999999999989999998899999999999999886432111 1122444432
Q ss_pred CCeeeCCCccHHHHHHHhcCC
Q 019775 286 SPRTIGPDAMAVEAMQKMESP 306 (336)
Q Consensus 286 ~~~~v~~~~~l~~~~~~~~~~ 306 (336)
.-+.|..=+++++.-+.|-.+
T Consensus 210 ~~~~VrALT~IedFNe~F~t~ 230 (293)
T COG4535 210 HTWRVRALTEIEDFNEAFGTH 230 (293)
T ss_pred CceEEEecccHHHHHHHhcCC
Confidence 234566666666655555443
No 312
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=87.21 E-value=7.2 Score=30.63 Aligned_cols=104 Identities=13% Similarity=0.026 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHcCC--CeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCcc--------ccc---cccC--CCCCCcEE
Q 019775 41 PHTLTFTQTLLKCR--GTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLD--------ALH---GDIG--ILSSDDIL 105 (336)
Q Consensus 41 ~~i~~~~~~i~~a~--~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~--------~~~---~~~~--~~~~~dlv 105 (336)
.++.++.+.+.... ....+|+.......-..+...|.+.|..+...+... +.. ..+. .-.+-|.+
T Consensus 24 ~d~~~l~~~~~~~~~~~~~r~y~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~~~d~i 103 (149)
T cd06167 24 FDYRKLLEFLRDGGEIVLARAYGNWTSPERQRGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKRRIDTI 103 (149)
T ss_pred cCHHHHHHHHHhCCeEEEEEEEEecCCchhHHHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhcCCCEE
Confidence 44666666665321 244555544432344667788999999998765321 110 0011 12356899
Q ss_pred EEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCC--CCCccccccC
Q 019775 106 VMFSKSGNTEELLKVVPCAKAKGAYLVSVTSV--EGNALAAVCD 147 (336)
Q Consensus 106 i~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~--~~s~l~~~ad 147 (336)
+++|..+ +...+++.++++|.+|+++... ....+.+.||
T Consensus 104 vLvSgD~---Df~~~i~~lr~~G~~V~v~~~~~~~s~~L~~~~d 144 (149)
T cd06167 104 VLVSGDS---DFVPLVERLRELGKRVIVVGFEAKTSRELRKAAD 144 (149)
T ss_pred EEEECCc---cHHHHHHHHHHcCCEEEEEccCccChHHHHHhCC
Confidence 9999876 7888889999999999999875 3334555555
No 313
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=87.00 E-value=3.6 Score=41.04 Aligned_cols=58 Identities=16% Similarity=0.191 Sum_probs=40.9
Q ss_pred CCCCcEEEEEeCCCCcHH-----HHHHHHHHHHcCCeEEEEeCCCCCccc-cccCEEEEcCCCcc
Q 019775 99 LSSDDILVMFSKSGNTEE-----LLKVVPCAKAKGAYLVSVTSVEGNALA-AVCDMNVHLPVERE 157 (336)
Q Consensus 99 ~~~~dlvi~iS~sG~~~~-----~~~~~~~ak~~g~~vi~IT~~~~s~l~-~~ad~~i~~~~~~~ 157 (336)
+..-|++|++........ ....+..+|++|+++|+|-... ++.+ ..||..+.+..+++
T Consensus 164 ~~~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~~~G~klivIDPr~-t~tA~~~AD~~i~irPGTD 227 (617)
T cd02770 164 LKDSKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVIDPRY-TDTAVTLADEWIPIRPGTD 227 (617)
T ss_pred HhcCCEEEEECCCHHHhcCCCCchHHHHHHHHHcCCeEEEECCCC-CccccccCCEEECCCCCcH
Confidence 345688888866533222 2345678899999999997764 5555 48999998877666
No 314
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=86.99 E-value=11 Score=37.97 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=40.4
Q ss_pred CCCCcEEEEEeCCCCc--HHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775 99 LSSDDILVMFSKSGNT--EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE 157 (336)
Q Consensus 99 ~~~~dlvi~iS~sG~~--~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~ 157 (336)
+..-|++|++...... .-+...+..+|++|+++|+|-. ..+..+..||..+.+..+++
T Consensus 153 ~~~Ad~Ivl~G~n~~~~~~p~~~~i~~ak~~GaKlIvIDP-r~t~ta~~AD~wl~irPGTD 212 (679)
T cd02763 153 LEHTKYFMMIGVAEDHHSNPFKIGIQKLKRRGGKFVAVNP-VRTGYAAIADEWVPIKPGTD 212 (679)
T ss_pred HHhCCEEEEECCCCcccCchHHHHHHHHHhCCCcEEEEcC-cCCcchHhhCeecCcCCCcH
Confidence 3456788888643221 1233456678899999999965 46667899999998876655
No 315
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=86.50 E-value=6.9 Score=40.32 Aligned_cols=117 Identities=13% Similarity=0.090 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHh--cCCeeeecCC-------cccc---------ccccCCCCCC
Q 019775 41 PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLIS--LGIKSGFLNP-------LDAL---------HGDIGILSSD 102 (336)
Q Consensus 41 ~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~--~g~~~~~~~~-------~~~~---------~~~~~~~~~~ 102 (336)
+.++.+++.+.+..+.|-+++.|....-..++..+|.+ +|-+-+.... .... ......+..-
T Consensus 298 EAld~ia~kL~~i~~~ia~~~s~~~t~Ee~y~~~kl~r~~lgt~nid~~~r~~~~~~~~~~~~~~~g~~~~~~~~Die~a 377 (797)
T PRK07860 298 EALAVAARGLAAARGRVGVLVGGRLTVEDAYAYAKFARVALGTNDIDFRARPHSAEEADFLAARVAGRGLGVTYADLEKA 377 (797)
T ss_pred HHHHHHHHHHHhhhccEEEEeCCCCCHHHHHHHHHHHHHhcCCCccccccccccchHHHHHHhhccCCCCCCCHHHHHhC
Confidence 45666666666553457777766544444445556654 4443221000 0000 0111224556
Q ss_pred cEEEEEeCC-CCcHH-H-HHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775 103 DILVMFSKS-GNTEE-L-LKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE 157 (336)
Q Consensus 103 dlvi~iS~s-G~~~~-~-~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~ 157 (336)
|+++++... ..+.. + .++.+.++++|+++|+|-.......+++||..+.+..+.+
T Consensus 378 d~ill~G~N~~~~~P~~~~ri~~a~k~~GakiivIDPr~t~t~a~~Ad~~l~irPGtD 435 (797)
T PRK07860 378 PAVLLVGFEPEEESPIVFLRLRKAARKHGLKVYSIAPFATRGLEKMGGTLLRTAPGGE 435 (797)
T ss_pred CEEEEEeCChhhhhHHHHHHHHHHHHhCCCEEEEECCCCchhhhhhhhceeccCCCcH
Confidence 888888543 44322 2 2334555789999999976555456788999887755544
No 316
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=86.39 E-value=5.4 Score=37.40 Aligned_cols=119 Identities=17% Similarity=0.255 Sum_probs=64.1
Q ss_pred cCCh-hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHH-hcCCeeeecC-----Cc-cccc------cccCCC-CC
Q 019775 37 HLSL-PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLI-SLGIKSGFLN-----PL-DALH------GDIGIL-SS 101 (336)
Q Consensus 37 ~~~~-~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~-~~g~~~~~~~-----~~-~~~~------~~~~~~-~~ 101 (336)
.++. +.++.+++.|.+.+ +..++|.|.+..-..+..++|. .+|-.+.... .. .... .....+ .+
T Consensus 53 ~isWdeAl~~ia~~L~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~di~~~ 131 (415)
T cd02761 53 PVSLEEAIEKAAEILKEAK-RPLFYGLGTTVCEAQRAGIELAEKLGAIIDHAASVCHGPNLLALQDSGWPTTTLGEVKNR 131 (415)
T ss_pred CCCcHHHHHHHHHHHHhhc-CCEEEEcccchHHHHHHHHHHHHHHCCCccccccccccchHHHHHhCCCccccHHHHHhc
Confidence 3443 66888888888774 5566677766533333334443 3453221111 00 0000 111123 35
Q ss_pred CcEEEEEeCCC-Cc-HHHH-HHH-------HHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775 102 DDILVMFSKSG-NT-EELL-KVV-------PCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE 157 (336)
Q Consensus 102 ~dlvi~iS~sG-~~-~~~~-~~~-------~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~ 157 (336)
-|++|++...- .+ +... +.. +.++++|++++.|-. ..++.+..||..+.+..+.+
T Consensus 132 ad~il~~G~n~~~~~p~~~~~~~~~~~~~~~~~~~~g~kli~idp-~~t~ta~~Ad~~l~i~pgtd 196 (415)
T cd02761 132 ADVIVYWGTNPMHAHPRHMSRYSVFPRGFFREGGREDRTLIVVDP-RKSDTAKLADIHLQIDPGSD 196 (415)
T ss_pred CCEEEEEcCCccccccHHhhhhhhhhhhhccccCCCCCEEEEEcC-CCcchhhhcceEEecCCCCc
Confidence 78888885432 22 2222 211 122357899998854 57777899999998876655
No 317
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=86.11 E-value=20 Score=30.45 Aligned_cols=68 Identities=15% Similarity=0.206 Sum_probs=47.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHH
Q 019775 102 DDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAI 181 (336)
Q Consensus 102 ~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~ 181 (336)
.|+++++..-.+...+++ |-+.++++|+|-+....| +-+.+.+|+..+ |..+..+++.++..
T Consensus 174 ~D~vvvln~~e~~sAilE----A~K~~IPTIgIVDtN~~P----~liTYpVPaNDD----------s~~sv~f~~~l~k~ 235 (251)
T KOG0832|consen 174 PDLVVVLNPEENHSAILE----AAKMAIPTIGIVDTNCNP----ELITYPVPANDD----------SPASVEFILNLLKR 235 (251)
T ss_pred cceeEecCcccccHHHHH----HHHhCCCeEEEecCCCCc----cceeeccCCCCC----------cHHHHHHHHHHHHH
Confidence 388888877766665554 445689999999875544 334555677655 66777888888877
Q ss_pred HHHhhc
Q 019775 182 AMMGAR 187 (336)
Q Consensus 182 ~~~~~~ 187 (336)
.+.+..
T Consensus 236 ai~~g~ 241 (251)
T KOG0832|consen 236 AIARGK 241 (251)
T ss_pred HHHHHH
Confidence 777664
No 318
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=86.04 E-value=12 Score=38.79 Aligned_cols=83 Identities=10% Similarity=0.187 Sum_probs=50.4
Q ss_pred CCCCcEEEEEeCCCCcHH--HHHHHHHHH--HcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHH
Q 019775 99 LSSDDILVMFSKSGNTEE--LLKVVPCAK--AKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMV 174 (336)
Q Consensus 99 ~~~~dlvi~iS~sG~~~~--~~~~~~~ak--~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~ 174 (336)
+...|++|++........ ...-+..++ ++|+++|+|-. ..++.+..||..+.+..+++ .+
T Consensus 204 i~~ad~il~~G~Np~~~~p~~~~~i~~a~~~~~GakliviDP-r~t~ta~~Ad~~l~irPGTD---------------~A 267 (830)
T TIGR01706 204 FEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKVKVVVLST-FTHRSFDLADIGIIFKPQTD---------------LA 267 (830)
T ss_pred HhhCCEEEEEcCCcchhCCHHHHHHHHHHhccCCCEEEEECC-CCCchhHHhCeeeccCCCCH---------------HH
Confidence 355689888866543221 112222233 47999999975 46677789999998877766 45
Q ss_pred HHHHHHHHHHhhcCCChHHHhhcC
Q 019775 175 FGDTVAIAMMGARNLTRDEYAANH 198 (336)
Q Consensus 175 l~d~l~~~~~~~~~~~~~~~~~~~ 198 (336)
|+..++..++.+...+ ++|.+.+
T Consensus 268 L~lam~~~ii~~~~~D-~~Fv~~~ 290 (830)
T TIGR01706 268 ILNYIANYIIQNNAVN-MDFVNKH 290 (830)
T ss_pred HHHHHHHHHHHCCCcc-HHHHHHH
Confidence 5555555555554333 3454443
No 319
>smart00642 Aamy Alpha-amylase domain.
Probab=85.95 E-value=3.2 Score=33.70 Aligned_cols=78 Identities=19% Similarity=0.244 Sum_probs=50.3
Q ss_pred cchHHHHHHHHHHHHhcCCeeeecCCcccccc---ccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEE-EEeCCC
Q 019775 63 GKSGFVANKISQTLISLGIKSGFLNPLDALHG---DIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLV-SVTSVE 138 (336)
Q Consensus 63 G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~---~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi-~IT~~~ 138 (336)
|.=..+++.+- .|..+|++.+.+++...... ........|..-+=+.-|...+..++++.|+++|++++ =+.-|.
T Consensus 16 G~~~gi~~~l~-yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 16 GDLQGIIEKLD-YLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred cCHHHHHHHHH-HHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 33446666665 89999999998887544332 11112233332233355888999999999999999987 344444
Q ss_pred CCc
Q 019775 139 GNA 141 (336)
Q Consensus 139 ~s~ 141 (336)
.+.
T Consensus 95 ~~~ 97 (166)
T smart00642 95 TSD 97 (166)
T ss_pred CCC
Confidence 444
No 320
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.
Probab=85.75 E-value=5.5 Score=41.06 Aligned_cols=59 Identities=10% Similarity=0.185 Sum_probs=40.2
Q ss_pred CCCCcEEEEEeCCCCcH------HHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775 99 LSSDDILVMFSKSGNTE------ELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE 157 (336)
Q Consensus 99 ~~~~dlvi~iS~sG~~~------~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~ 157 (336)
+..-|++|++....... .....++.++++|+++|+|-.......+..||..+.+..+++
T Consensus 212 ~~~a~~il~~G~N~~~s~~~~~~~~~~~~~~~~~~G~kiivvDPr~t~taa~~Ad~~l~irPGtD 276 (797)
T TIGR02166 212 IENSKLVVMFGNNPAETRMSGGGQTYYFLQALEKSNARVIVIDPRYTDTVAGREDEWIPIRPGTD 276 (797)
T ss_pred HHhCCEEEEECCCHHHhcCCCcchHHHHHHHHHHCCCeEEEECCCCCccchhcCCEEECCCCCCH
Confidence 34568888885543222 234556666789999999977654444468999998877766
No 321
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=84.55 E-value=2.8 Score=35.32 Aligned_cols=53 Identities=17% Similarity=0.192 Sum_probs=45.3
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEE
Q 019775 98 ILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVH 151 (336)
Q Consensus 98 ~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~ 151 (336)
.+.+-|++|++-.|....-...++..++++|++++.|-. ..++....+|++|.
T Consensus 152 ~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~-~~~~~d~~~d~~~~ 204 (206)
T cd01410 152 AACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNL-QPTPKDKLADLVIH 204 (206)
T ss_pred HHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECC-CCCCCCccccEEEe
Confidence 355779999999999999999999999999999997765 57788888888775
No 322
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=84.10 E-value=2.5 Score=37.86 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=40.3
Q ss_pred CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHH
Q 019775 221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK 268 (336)
Q Consensus 221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~ 268 (336)
+..+..+.++.+.+..+.+.. .-+||+|++++++|++++..++..+.
T Consensus 337 ~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 337 VLTVDADTPLSEILARIRQAP-CPVAVVDEDGRYVGIISRGELLEALA 383 (386)
T ss_pred ccccCccchHHHHHHHHhcCC-CceeEEcCCCcEEEEecHHHHHHHHh
Confidence 457888999999888888765 36899999999999999999998775
No 323
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=83.95 E-value=6.1 Score=31.84 Aligned_cols=92 Identities=12% Similarity=0.069 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHcCCCeEEEEeccchHHH-HHHHHHHHHhcCCee--------eecCCccc-cccccC-CCCCCcEEEEEe
Q 019775 41 PHTLTFTQTLLKCRGTIFFTGVGKSGFV-ANKISQTLISLGIKS--------GFLNPLDA-LHGDIG-ILSSDDILVMFS 109 (336)
Q Consensus 41 ~~i~~~~~~i~~a~~~I~i~G~G~s~~~-a~~~~~~l~~~g~~~--------~~~~~~~~-~~~~~~-~~~~~dlvi~iS 109 (336)
+.+.++++.+...+++|++||.|.-... ..++-..=..+..-+ .+.+.... +...-. .-.+.|.+|+ .
T Consensus 55 ~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~K~G~~~PGt~ipI~~p~~l~~~~pd~viv-l 133 (160)
T PF08484_consen 55 AELREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPLKQGKYLPGTHIPIVSPEELKERKPDYVIV-L 133 (160)
T ss_dssp HHHHHHHHHHHHTT--EEEE---SHHHHHHHHHT--TTTS--EEES-GGGTTEE-TTT--EEEEGGG--SS--SEEEE-S
T ss_pred HHHHHHHHHHHHcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChhhcCcccCCCCCeECCHHHHhhCCCCEEEE-c
Confidence 4455565555555468999999886643 333221101111000 01111110 111111 1223576655 5
Q ss_pred CCCCcHHHHHHHHHHHHcCCeEEE
Q 019775 110 KSGNTEELLKVVPCAKAKGAYLVS 133 (336)
Q Consensus 110 ~sG~~~~~~~~~~~ak~~g~~vi~ 133 (336)
...+..++.+.++...++|.+.|.
T Consensus 134 aw~y~~EI~~~~~~~~~~gg~fi~ 157 (160)
T PF08484_consen 134 AWNYKDEIIEKLREYLERGGKFIV 157 (160)
T ss_dssp -GGGHHHHHHHTHHHHHTT-EEEE
T ss_pred ChhhHHHHHHHHHHHHhcCCEEEE
Confidence 588899999999999999999875
No 324
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=83.89 E-value=2.6 Score=37.02 Aligned_cols=57 Identities=16% Similarity=0.111 Sum_probs=48.7
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCC
Q 019775 98 ILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVE 155 (336)
Q Consensus 98 ~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~ 155 (336)
.+.+-|++|++-.|....-...+++.++++|+++|.|-. ..+++...+|+.|.-+.+
T Consensus 201 ~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~-~~t~~d~~a~~~i~~~~~ 257 (260)
T cd01409 201 RLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNI-GPTRADHLATLKVDARCG 257 (260)
T ss_pred HHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcC-CCCCCCccccEEEeCChh
Confidence 356679999999999999989999999999999998875 578888889988876554
No 325
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=83.64 E-value=18 Score=35.35 Aligned_cols=59 Identities=14% Similarity=0.093 Sum_probs=40.0
Q ss_pred CCCCCcEEEEEeCCC-CcH-HH--HHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775 98 ILSSDDILVMFSKSG-NTE-EL--LKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE 157 (336)
Q Consensus 98 ~~~~~dlvi~iS~sG-~~~-~~--~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~ 157 (336)
.+..-|++|++.... .+. .+ ..-+..++++|+++|+|-.. .+..+..||..|.+..+++
T Consensus 159 D~~~a~~Il~~G~n~~~t~~~~~~~~~~~~a~~~gakliviDPr-~s~ta~~AD~~l~i~PGtD 221 (523)
T cd02757 159 DYANAKYILFFGADPLESNRQNPHAQRIWGGKMDQAKVVVVDPR-LSNTAAKADEWLPIKPGED 221 (523)
T ss_pred chhcCcEEEEECCChHHhCCCcHHHHHHHHHHHCCCEEEEECCC-CChhhHhcCEeeCCCCCcH
Confidence 345668888887543 211 11 13344568899999999765 5666778999998877666
No 326
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=83.46 E-value=2.8 Score=35.84 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=44.6
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEE
Q 019775 98 ILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVH 151 (336)
Q Consensus 98 ~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~ 151 (336)
.+.+-|++|++-.|+...-...+++.++++|+++|.|-- ..++....+|+.|.
T Consensus 168 ~~~~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~-~~~~~~~~~~~~i~ 220 (222)
T cd01413 168 AAKEADLFIVLGSSLVVYPANLLPLIAKENGAKLVIVNA-DETPFDYIADLVIQ 220 (222)
T ss_pred HHhcCCEEEEEccCCEeccHhHHHHHHHHcCCeEEEEcC-CCCCCCcceeEEEe
Confidence 356779999999999999999999999999999987764 46788888888764
No 327
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=82.27 E-value=14 Score=36.68 Aligned_cols=120 Identities=16% Similarity=0.033 Sum_probs=66.4
Q ss_pred hcCCh-hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHH-HhcCCeeeecCCc-------cc----cc-cccCCCCC
Q 019775 36 QHLSL-PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTL-ISLGIKSGFLNPL-------DA----LH-GDIGILSS 101 (336)
Q Consensus 36 ~~~~~-~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l-~~~g~~~~~~~~~-------~~----~~-~~~~~~~~ 101 (336)
+.++. +.++.+++.+.+. +++.+++.+....-..++..+| ..+|-+-+..... .. .. .....+..
T Consensus 284 ~~isWdeAl~~ia~kL~~i-~~va~~~~~~~~~e~~~~~~~~~~~lGt~~~~~~~~~~~~~~~~~~~~~~~g~~~~di~~ 362 (603)
T TIGR01973 284 LEVSWAEALAIAAEKLKAS-SRIGGIAGPRSSLEELFALKKLVRKLGSENFDLRIRNYEFESADLRANYLFNTTLADIEE 362 (603)
T ss_pred EEcCHHHHHHHHHHHHhcc-CcEEEEeCCCCCHHHHHHHHHHHHHhCCCcccccccccccccchhhcccccCCCHHHHHh
Confidence 34443 5577777777776 4788887665443333333343 3445332211110 00 00 11222456
Q ss_pred CcEEEEEeCCC-Cc-HHHHHHHHHHHHcC-CeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775 102 DDILVMFSKSG-NT-EELLKVVPCAKAKG-AYLVSVTSVEGNALAAVCDMNVHLPVERE 157 (336)
Q Consensus 102 ~dlvi~iS~sG-~~-~~~~~~~~~ak~~g-~~vi~IT~~~~s~l~~~ad~~i~~~~~~~ 157 (336)
-|++|++...- .+ +-...-++.++++| +++|.|-. ..+..+..||..+.+..+.+
T Consensus 363 ad~il~~G~N~~~s~p~~~~~i~~a~~~ggaklividp-r~s~ta~~Ad~~l~i~Pgtd 420 (603)
T TIGR01973 363 ADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGI-EKWNLTYPANTNLVFHPGLS 420 (603)
T ss_pred CCEEEEEccCchhhhHHHHHHHHHHHhcCCcEEEEECC-ccccchhhhccceeecCCcc
Confidence 78888886543 33 22333455666666 88888875 46778899999887755544
No 328
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=81.63 E-value=10 Score=34.08 Aligned_cols=80 Identities=14% Similarity=0.086 Sum_probs=55.8
Q ss_pred EEEEeccchHHHHHHHHHHHHhc--CCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHH---HHHHHHHcCCe-
Q 019775 57 IFFTGVGKSGFVANKISQTLISL--GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLK---VVPCAKAKGAY- 130 (336)
Q Consensus 57 I~i~G~G~s~~~a~~~~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~---~~~~ak~~g~~- 130 (336)
..+++...|..+|..++..|.-- .....-+++++...........+|++|+-|.++.+..+.+ ++..+|+.|++
T Consensus 3 ~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~F~dGE~~v~i~~~v~g~~V~ivqs~~~~n~~l~elll~~~alr~~~a~~ 82 (301)
T PRK07199 3 PLLLALPGNEAAAGRLAAALGVEVGRIELHRFPDGESYVRLDSPVAGRTVVLVCSLDRPDEKLLPLLFAAEAARELGARR 82 (301)
T ss_pred eEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEECCCCCCCEEEEECCCCCCcHHHHHHHHHHHHHHHcCCCe
Confidence 45777777888999999988632 3333446677776666566777899999998765554444 46788999986
Q ss_pred EEEEeC
Q 019775 131 LVSVTS 136 (336)
Q Consensus 131 vi~IT~ 136 (336)
+.+|..
T Consensus 83 i~~ViP 88 (301)
T PRK07199 83 VGLVAP 88 (301)
T ss_pred EEEEee
Confidence 556654
No 329
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=81.22 E-value=9.3 Score=34.83 Aligned_cols=82 Identities=11% Similarity=0.103 Sum_probs=58.7
Q ss_pred CeEEEEeccchHHHHHHHHHHHHhc--CCeeeecCCccccccccCCCCCCcEEEEEeCCCC-cHHHH---HHHHHHHHcC
Q 019775 55 GTIFFTGVGKSGFVANKISQTLISL--GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGN-TEELL---KVVPCAKAKG 128 (336)
Q Consensus 55 ~~I~i~G~G~s~~~a~~~~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~-~~~~~---~~~~~ak~~g 128 (336)
+++.+++...+..+|+.++..|..- .....-+++++........+..+|++|+-|.++. +..+. -++..+|+.|
T Consensus 8 ~~~~i~~~~~~~~La~~ia~~lg~~l~~~~~~~FpdGE~~v~i~~~vrg~dV~ivqs~~~p~nd~l~eLll~~~alr~~~ 87 (332)
T PRK00553 8 SNHVIFSLSKAKKLVDSICRKLSMKPGEIVIQKFADGETYIRFDESVRNKDVVIFQSTCSPVNDSLMELLIAIDALKRGS 87 (332)
T ss_pred CCeEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEECCCCCCCEEEEEcCCCCCCchHHHHHHHHHHHHHHcC
Confidence 3677888888889999999988732 3344456677776666677778899999998764 44444 4467888899
Q ss_pred Ce-EEEEeC
Q 019775 129 AY-LVSVTS 136 (336)
Q Consensus 129 ~~-vi~IT~ 136 (336)
++ +.+|..
T Consensus 88 a~~i~~ViP 96 (332)
T PRK00553 88 AKSITAILP 96 (332)
T ss_pred CCeEEEEee
Confidence 86 556654
No 330
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=81.15 E-value=2.8 Score=36.37 Aligned_cols=57 Identities=14% Similarity=0.164 Sum_probs=48.6
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCC
Q 019775 98 ILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVE 155 (336)
Q Consensus 98 ~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~ 155 (336)
.+.+-|++|++-.|....-...+...++.+|++++.|.. ...++...+|+.+....+
T Consensus 175 ~~~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~-~~t~~d~~~~~~i~~~~~ 231 (244)
T PRK14138 175 LSSKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNL-GETPLDDIATLKYNMDVV 231 (244)
T ss_pred HHhcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcC-CCCCCCcceeEEEeCCHH
Confidence 356779999999999999999999999999999997775 577888889988887654
No 331
>PRK09271 flavodoxin; Provisional
Probab=81.08 E-value=22 Score=28.49 Aligned_cols=70 Identities=14% Similarity=0.148 Sum_probs=44.5
Q ss_pred EEEEe--ccchHHHHHHHHHHHHhcCCeeeecC-CccccccccCCCCCCcEEEEEeC---CCCcH-HHHHHHHHHHH
Q 019775 57 IFFTG--VGKSGFVANKISQTLISLGIKSGFLN-PLDALHGDIGILSSDDILVMFSK---SGNTE-ELLKVVPCAKA 126 (336)
Q Consensus 57 I~i~G--~G~s~~~a~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~~~~~dlvi~iS~---sG~~~-~~~~~~~~ak~ 126 (336)
+.+|| .|.+..+|+.++..|...|..+.... +..........+.+-|++++.|. .|..+ ++...++.+++
T Consensus 4 ~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~ 80 (160)
T PRK09271 4 LLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAE 80 (160)
T ss_pred EEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHH
Confidence 44555 47889999999999999998875443 11111111223345577777763 36655 58888877766
No 332
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=80.87 E-value=13 Score=33.78 Aligned_cols=82 Identities=20% Similarity=0.131 Sum_probs=57.9
Q ss_pred CeEEEEeccchHHHHHHHHHHHHhc--CCeeeecCCccccccccCCCCCCcEEEEEeCCCC-cHH---HHHHHHHHHHcC
Q 019775 55 GTIFFTGVGKSGFVANKISQTLISL--GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGN-TEE---LLKVVPCAKAKG 128 (336)
Q Consensus 55 ~~I~i~G~G~s~~~a~~~~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~-~~~---~~~~~~~ak~~g 128 (336)
++..+++...+..+|..++..|.-. .....-+++++........+...|++|+-|.+.. +.. ++-++..+|+.|
T Consensus 8 ~~~~i~~~~~~~~la~~ia~~lg~~l~~~~~~~FpdGE~~v~i~~~v~g~dV~ii~s~~~~~nd~l~eLll~~~alr~~~ 87 (323)
T PRK02458 8 KQIKLFSLNSNLEIAEKIAQAAGVPLGKLSSRQFSDGEIMINIEESVRGDDIYIIQSTSFPVNDHLWELLIMIDACKRAS 87 (323)
T ss_pred CCeEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEecCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHHcC
Confidence 4678888888889999999988732 3344456677776666666777889888887544 333 444567889999
Q ss_pred Ce-EEEEeC
Q 019775 129 AY-LVSVTS 136 (336)
Q Consensus 129 ~~-vi~IT~ 136 (336)
++ +.+|..
T Consensus 88 a~~i~lViP 96 (323)
T PRK02458 88 ANTVNVVLP 96 (323)
T ss_pred CceEEEEEe
Confidence 85 556654
No 333
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=80.76 E-value=25 Score=36.01 Aligned_cols=58 Identities=12% Similarity=0.060 Sum_probs=41.1
Q ss_pred CCCCcEEEEEeCCC-Cc--HHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775 99 LSSDDILVMFSKSG-NT--EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE 157 (336)
Q Consensus 99 ~~~~dlvi~iS~sG-~~--~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~ 157 (336)
+..-+++|++.... .+ ....+.+..+|++|+++|+|-.. .++.+..||..+.+.-+++
T Consensus 171 ~~~ad~Il~~G~Np~~s~~~~~~~~~~~ar~~GaKlIvVDPr-~t~ta~~AD~wlpirPGTD 231 (760)
T cd02760 171 TPLANYVISFGSNVEASGGPCAVTRHADARVRGYKRVQVEPH-LSVTGACSAEWVPIRPKTD 231 (760)
T ss_pred HhcCCEEEEECCCchHhcCcHHHHHHHHHHHcCCeEEEEcCC-CCcchhhcCeEeCcCCCcH
Confidence 34567888885443 22 12345567788999999999654 6777889999998876655
No 334
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=80.73 E-value=33 Score=35.15 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=39.6
Q ss_pred CCCCCcEEEEEeCC-CCc-H-HHHHHHHHHH-HcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775 98 ILSSDDILVMFSKS-GNT-E-ELLKVVPCAK-AKGAYLVSVTSVEGNALAAVCDMNVHLPVERE 157 (336)
Q Consensus 98 ~~~~~dlvi~iS~s-G~~-~-~~~~~~~~ak-~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~ 157 (336)
.+..-|++|++... ..+ + .....+..++ ++|+++|+|-. ..++.+..||..+.+..+.+
T Consensus 193 D~~~ad~Il~~G~N~~~~~~~~~~~~~~~a~~~~G~kiivIDP-r~s~ta~~Ad~~l~i~PGtD 255 (759)
T PRK15488 193 DLANSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEP-RFSVVASKADEWHAIRPGTD 255 (759)
T ss_pred CHhhCcEEEEeccChHhcCCcHHHHHHHHHHHhCCCEEEEECC-CCCcchhhCCeeeccCCCcH
Confidence 34556888888543 221 1 1223344455 89999999966 46778899999998877666
No 335
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.49 E-value=11 Score=35.90 Aligned_cols=84 Identities=19% Similarity=0.257 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccc---------cc-----c-----ccCCCCC
Q 019775 41 PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDA---------LH-----G-----DIGILSS 101 (336)
Q Consensus 41 ~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~---------~~-----~-----~~~~~~~ 101 (336)
.++.++...+.. ++|.++|.|.|.. .++..|...|..+........ +. . ....+.+
T Consensus 3 ~~~~~~~~~~~~--~~i~v~G~G~sG~---a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~ 77 (458)
T PRK01710 3 RDFNEFKKFIKN--KKVAVVGIGVSNI---PLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDG 77 (458)
T ss_pred chHHHHhhhhcC--CeEEEEcccHHHH---HHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhcc
Confidence 346666666664 3899999999885 334557788888777652210 00 0 0011234
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHHcCCeEE
Q 019775 102 DDILVMFSKSGNTEELLKVVPCAKAKGAYLV 132 (336)
Q Consensus 102 ~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi 132 (336)
-|+ |+.| +|-... ...++.|+++|++++
T Consensus 78 ~dl-VV~S-pgi~~~-~p~~~~a~~~~i~i~ 105 (458)
T PRK01710 78 FDV-IFKT-PSMRID-SPELVKAKEEGAYIT 105 (458)
T ss_pred CCE-EEEC-CCCCCC-chHHHHHHHcCCcEE
Confidence 454 4555 555432 345667777887775
No 336
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=80.25 E-value=26 Score=30.94 Aligned_cols=99 Identities=17% Similarity=0.162 Sum_probs=61.3
Q ss_pred HHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccc-------cccccCCCCCCcEEEEEeCCCCcHHH
Q 019775 45 TFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDA-------LHGDIGILSSDDILVMFSKSGNTEEL 117 (336)
Q Consensus 45 ~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~-------~~~~~~~~~~~dlvi~iS~sG~~~~~ 117 (336)
.+++.+.+.+..+.|+....+... ...+...|.+++.+++... +...+... +.|++| +...+-+.+.
T Consensus 22 ~LA~~l~~~g~~v~f~~~~~~~~~----~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~-~~d~vV-~D~y~~~~~~ 95 (279)
T TIGR03590 22 TLARALHAQGAEVAFACKPLPGDL----IDLLLSAGFPVYELPDESSRYDDALELINLLEEE-KFDILI-VDHYGLDADW 95 (279)
T ss_pred HHHHHHHHCCCEEEEEeCCCCHHH----HHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhc-CCCEEE-EcCCCCCHHH
Confidence 455555443358888887765543 3466788999988865331 22222222 235544 4444555554
Q ss_pred HHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCC
Q 019775 118 LKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPV 154 (336)
Q Consensus 118 ~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~ 154 (336)
. +..|..+++++.|++....+. .||++|...-
T Consensus 96 ~---~~~k~~~~~l~~iDD~~~~~~--~~D~vin~~~ 127 (279)
T TIGR03590 96 E---KLIKEFGRKILVIDDLADRPH--DCDLLLDQNL 127 (279)
T ss_pred H---HHHHHhCCeEEEEecCCCCCc--CCCEEEeCCC
Confidence 4 445567999999999766655 8999987643
No 337
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=80.13 E-value=16 Score=28.42 Aligned_cols=75 Identities=17% Similarity=0.097 Sum_probs=43.7
Q ss_pred EEEEe--ccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeC---CCCcH-HHHHHHHHHHHcCCe
Q 019775 57 IFFTG--VGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSK---SGNTE-ELLKVVPCAKAKGAY 130 (336)
Q Consensus 57 I~i~G--~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~---sG~~~-~~~~~~~~ak~~g~~ 130 (336)
..+|+ .|.+..+|+.++..+...|..+..+.+..........+.+-|++++.|- .|..+ .+...++....+|-+
T Consensus 4 ~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~~~~k~ 83 (140)
T TIGR01754 4 LLAYLSLSGNTEEVAFMIQDYLQKDGHEVDILHRIGTLADAPLDPENYDLVFLGTWTWERGRTPDEMKDFIAELGYKPSN 83 (140)
T ss_pred EEEEECCCChHHHHHHHHHHHHhhCCeeEEecccccccccCcCChhhCCEEEEEcCeeCCCcCCHHHHHHHHHhcccCCE
Confidence 34444 4888999999999998888876522221111111112334566666653 44444 677777777655433
Q ss_pred E
Q 019775 131 L 131 (336)
Q Consensus 131 v 131 (336)
+
T Consensus 84 ~ 84 (140)
T TIGR01754 84 V 84 (140)
T ss_pred E
Confidence 3
No 338
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=80.10 E-value=22 Score=27.70 Aligned_cols=87 Identities=22% Similarity=0.238 Sum_probs=58.0
Q ss_pred HHHHHHHHHcCCCeEEEEeccc-hHHHHHHHHHHHHhcCCeeeecCCcc---ccccc-----cCCC-CCCcEEEEEeCCC
Q 019775 43 TLTFTQTLLKCRGTIFFTGVGK-SGFVANKISQTLISLGIKSGFLNPLD---ALHGD-----IGIL-SSDDILVMFSKSG 112 (336)
Q Consensus 43 i~~~~~~i~~a~~~I~i~G~G~-s~~~a~~~~~~l~~~g~~~~~~~~~~---~~~~~-----~~~~-~~~dlvi~iS~sG 112 (336)
-+.+.+.+.++ ++|-++|... -.-.+......|...|+.++.+++.. ++... +..+ .+=|++-+|=
T Consensus 6 ~~~i~~iL~~~-K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~IDiVdvFR--- 81 (140)
T COG1832 6 EEDIAEILKSA-KTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPIDIVDVFR--- 81 (140)
T ss_pred HHHHHHHHHhC-ceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCcEEEEec---
Confidence 35566777889 5999999853 23555666667788999999999722 22221 1112 3458887774
Q ss_pred CcHHHHHHHHHHHHcCCeEEE
Q 019775 113 NTEELLKVVPCAKAKGAYLVS 133 (336)
Q Consensus 113 ~~~~~~~~~~~ak~~g~~vi~ 133 (336)
.++.+.+.++.+-+.|++++=
T Consensus 82 ~~e~~~~i~~eal~~~~kv~W 102 (140)
T COG1832 82 RSEAAPEVAREALEKGAKVVW 102 (140)
T ss_pred ChhhhHHHHHHHHhhCCCeEE
Confidence 455666777888888887763
No 339
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=80.07 E-value=4.3 Score=35.84 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=46.8
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccc-cccCEEEEcCCC
Q 019775 98 ILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALA-AVCDMNVHLPVE 155 (336)
Q Consensus 98 ~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~-~~ad~~i~~~~~ 155 (336)
.+.+-|++|++-.|+...-...+.+.++++|+++|.|... .+++. ..+|+.|.-+.+
T Consensus 196 ~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~-~t~~~~~~~d~~i~~~~~ 253 (271)
T PTZ00409 196 EIDKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNIS-KTYITNRISDYHVRAKFS 253 (271)
T ss_pred HHHcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCC-CCCCCCccccEEEECcHH
Confidence 4567899999999999999999999999999999988765 45665 468888776443
No 340
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=79.79 E-value=15 Score=33.55 Aligned_cols=131 Identities=13% Similarity=0.172 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-----CCeeeecC-Cccccccc-------cC-CCCCCcEEE
Q 019775 41 PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-----GIKSGFLN-PLDALHGD-------IG-ILSSDDILV 106 (336)
Q Consensus 41 ~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-----g~~~~~~~-~~~~~~~~-------~~-~~~~~dlvi 106 (336)
+.++++++.+.+| +|-.+||.+++..=|..+.-+|.+. .-++.+.. +...-... +. .-++.|+++
T Consensus 67 eAie~Aa~ILv~a-KrPllyg~s~tscEA~~~gielaE~~gaviD~~asvchGp~~~alqe~g~p~~TlgevKNraDviV 145 (429)
T COG1029 67 EAIEKAAEILVNA-KRPLLYGWSSTSCEAQELGIELAEKLGAVIDSNASVCHGPSVLALQEAGKPTATLGEVKNRADVIV 145 (429)
T ss_pred HHHHHHHHHHHhc-cCceEeccccchHHHHHHHHHHHHHhCcEecCCCccccchHHHHHHhcCCcccchhhhcccccEEE
Confidence 6799999999999 5999999999887777777776653 22222222 11111000 11 124567776
Q ss_pred EEeCCCCcHHHHHHHH-------HHHHcCC--eEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHH
Q 019775 107 MFSKSGNTEELLKVVP-------CAKAKGA--YLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGD 177 (336)
Q Consensus 107 ~iS~sG~~~~~~~~~~-------~ak~~g~--~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d 177 (336)
.--.......-..+-+ ..++||- +++.+-+-..++-+++||+.+.+..+.. .-+++
T Consensus 146 yWGtNP~~shPRhmSRYs~f~RG~~~~rGr~dRtvIvVD~RkT~TAklad~~~qi~p~sD---------------yelis 210 (429)
T COG1029 146 YWGTNPMHSHPRHMSRYSVFPRGFFRPRGREDRTVIVVDPRKTATAKLADNHVQIKPNSD---------------YELIS 210 (429)
T ss_pred EeCCCcccccchhhhhcccccccccccCCcccceEEEEecCcCchhhhhhheEecCCCCc---------------HHHHH
Confidence 6544443333333332 2334442 3455555668888999999999988766 45667
Q ss_pred HHHHHHHhhc
Q 019775 178 TVAIAMMGAR 187 (336)
Q Consensus 178 ~l~~~~~~~~ 187 (336)
.|...+-.+.
T Consensus 211 Al~~~l~G~~ 220 (429)
T COG1029 211 ALRAALHGKE 220 (429)
T ss_pred HHHHHhcCCC
Confidence 6666555543
No 341
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=79.67 E-value=18 Score=33.50 Aligned_cols=111 Identities=14% Similarity=0.088 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHcCC-CeEEEEeccchHHHHHHHHHHHH-hcCCeeeecCCc-------------cccccccCCCCCCcEE
Q 019775 41 PHTLTFTQTLLKCR-GTIFFTGVGKSGFVANKISQTLI-SLGIKSGFLNPL-------------DALHGDIGILSSDDIL 105 (336)
Q Consensus 41 ~~i~~~~~~i~~a~-~~I~i~G~G~s~~~a~~~~~~l~-~~g~~~~~~~~~-------------~~~~~~~~~~~~~dlv 105 (336)
+.++.+++.+.+.+ ++|.+++.+....-..++..+|. .+|-+....... .........+..-|++
T Consensus 73 eAl~~ia~~l~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~i 152 (386)
T cd02768 73 EALKTVAEGLKAVKGDKIGGIAGPRADLESLFLLKKLLNKLGSNNIDHRLRQSDLPADNRLRGNYLFNTSIAEIEEADAV 152 (386)
T ss_pred HHHHHHHHHHHhcChhheEEEecCCCCHHHHHHHHHHHHHhCCCCchhhhccccCccccccccCcccCCCHHHHhhCCEE
Confidence 55777777777652 26888876654433333344443 334432211100 0001112234567888
Q ss_pred EEEeCCCC--cHHHHHHHHHHHH-cCCeEEEEeCCCCCccccccCEEEEcCC
Q 019775 106 VMFSKSGN--TEELLKVVPCAKA-KGAYLVSVTSVEGNALAAVCDMNVHLPV 154 (336)
Q Consensus 106 i~iS~sG~--~~~~~~~~~~ak~-~g~~vi~IT~~~~s~l~~~ad~~i~~~~ 154 (336)
|++...-. ++-...-++.+++ +|++++.|-.. .++. .||..+.+..
T Consensus 153 l~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~-~t~~--~ad~~~~~~p 201 (386)
T cd02768 153 LLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPK-DTDL--IADLTYPVSP 201 (386)
T ss_pred EEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCC-cccc--ccceEEEcCC
Confidence 88865432 2333344555544 59999988875 4444 6898877644
No 342
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=79.63 E-value=31 Score=32.40 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=41.4
Q ss_pred CCCCCcEEEEEeCCCCcHH--H-HHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775 98 ILSSDDILVMFSKSGNTEE--L-LKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE 157 (336)
Q Consensus 98 ~~~~~dlvi~iS~sG~~~~--~-~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~ 157 (336)
.+..-|++|++........ . ....+.++++|+++|+|... .++.+..||..|.+..+++
T Consensus 108 D~~~ad~il~~G~n~~~~~~~~~~~~~~~~~~~g~k~v~vdP~-~t~~a~~ad~~i~i~PGtD 169 (432)
T PF00384_consen 108 DIENADVILIWGANPAESHPHLNARFRKAARKRGAKLVVVDPR-RTPTAAKADEWIPIRPGTD 169 (432)
T ss_dssp GGGH-SEEEEES--HHHHSHHHHHHHHHHHHHCTSEEEEEESS-B-HHGGGTSEEEEE-TTTH
T ss_pred eeeccceEEEcccCccccccccccccccccccCCcceEEEEec-cchhhhhcccccccccccc
Confidence 3556788888865444322 3 46678899999999999975 6668899999999977766
No 343
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.58 E-value=7.3 Score=36.95 Aligned_cols=72 Identities=15% Similarity=0.289 Sum_probs=42.8
Q ss_pred CeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccc--ccc-------------CCCCCCcEEEEEeCCCCcHHHHH
Q 019775 55 GTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALH--GDI-------------GILSSDDILVMFSKSGNTEELLK 119 (336)
Q Consensus 55 ~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~--~~~-------------~~~~~~dlvi~iS~sG~~~~~~~ 119 (336)
++|+++|.|.|...+..+ |.+.|..+.......... ..+ ..+.+.|++|+ .+|-..+ ..
T Consensus 7 ~~i~v~G~G~sG~s~~~~---l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~--spgi~~~-~~ 80 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDF---FLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVA--SPGIALA-HP 80 (438)
T ss_pred CEEEEEeeCHHHHHHHHH---HHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEE--CCCCCCC-CH
Confidence 489999999999777743 778888887665211110 000 11334565444 3444333 45
Q ss_pred HHHHHHHcCCeEE
Q 019775 120 VVPCAKAKGAYLV 132 (336)
Q Consensus 120 ~~~~ak~~g~~vi 132 (336)
.+..|+++|++++
T Consensus 81 ~~~~a~~~g~~v~ 93 (438)
T PRK03806 81 SLSAAADAGIEIV 93 (438)
T ss_pred HHHHHHHCCCeEE
Confidence 5677788888754
No 344
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=79.35 E-value=37 Score=28.56 Aligned_cols=100 Identities=14% Similarity=0.176 Sum_probs=61.7
Q ss_pred CeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCcc--cccc-----cc----CCCCC---CcEEEEEeCCCCcHHHHHH
Q 019775 55 GTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLD--ALHG-----DI----GILSS---DDILVMFSKSGNTEELLKV 120 (336)
Q Consensus 55 ~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~--~~~~-----~~----~~~~~---~dlvi~iS~sG~~~~~~~~ 120 (336)
++|.++|.|.+. ..-...|...|-.+.++.+.. .+.. .. ....+ .+..+++..+|...--..+
T Consensus 10 k~vlVvGgG~va---~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~ln~~i 86 (205)
T TIGR01470 10 RAVLVVGGGDVA---LRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEELNRRV 86 (205)
T ss_pred CeEEEECcCHHH---HHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHHHHHHH
Confidence 589999998764 444566677888888775421 1100 01 11122 2457777778887777788
Q ss_pred HHHHHHcCCeEEEEeCCCCCcc-----ccccCEEEEcCCCcc
Q 019775 121 VPCAKAKGAYLVSVTSVEGNAL-----AAVCDMNVHLPVERE 157 (336)
Q Consensus 121 ~~~ak~~g~~vi~IT~~~~s~l-----~~~ad~~i~~~~~~~ 157 (336)
.+.|+++|+.+-...+...+.. -+..++.+-++++..
T Consensus 87 ~~~a~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iaisT~G~ 128 (205)
T TIGR01470 87 AHAARARGVPVNVVDDPELCSFIFPSIVDRSPVVVAISSGGA 128 (205)
T ss_pred HHHHHHcCCEEEECCCcccCeEEEeeEEEcCCEEEEEECCCC
Confidence 9999999998876665543322 233456666655433
No 345
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=79.27 E-value=16 Score=33.16 Aligned_cols=82 Identities=11% Similarity=0.068 Sum_probs=58.4
Q ss_pred CeEEEEeccchHHHHHHHHHHHHhc--CCeeeecCCccccccccCCCCCCcEEEEEeCCCC-cHHHH---HHHHHHHHcC
Q 019775 55 GTIFFTGVGKSGFVANKISQTLISL--GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGN-TEELL---KVVPCAKAKG 128 (336)
Q Consensus 55 ~~I~i~G~G~s~~~a~~~~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~-~~~~~---~~~~~ak~~g 128 (336)
+...+++...+..+|+.++..|.-- ...+.-+++++........+...|++|+-|.+.. +..+. -++..+|+.|
T Consensus 5 ~~~~i~~g~~~~~La~~ia~~lg~~l~~~~~~~FpdGE~~v~i~~~v~g~~V~iiqs~~~p~nd~lmeLl~~~~alr~~~ 84 (319)
T PRK04923 5 RNLLVFSGNANKPLAQSICKELGVRMGKALVTRFSDGEVQVEIEESVRRQEVFVIQPTCAPSAENLMELLVLIDALKRAS 84 (319)
T ss_pred CceEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEECCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHHcC
Confidence 4677888888899999999988732 4444556777776666667777889888887654 44444 4467888899
Q ss_pred Ce-EEEEeC
Q 019775 129 AY-LVSVTS 136 (336)
Q Consensus 129 ~~-vi~IT~ 136 (336)
++ +.+|..
T Consensus 85 a~~i~~ViP 93 (319)
T PRK04923 85 AASVTAVIP 93 (319)
T ss_pred CcEEEEEee
Confidence 86 556654
No 346
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=78.95 E-value=15 Score=34.89 Aligned_cols=79 Identities=18% Similarity=0.098 Sum_probs=42.0
Q ss_pred HHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCc----HHHHHHHHHHHHcCCeEEEEe----CCCCCcccccc
Q 019775 75 TLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNT----EELLKVVPCAKAKGAYLVSVT----SVEGNALAAVC 146 (336)
Q Consensus 75 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~----~~~~~~~~~ak~~g~~vi~IT----~~~~s~l~~~a 146 (336)
.+.+.|..+.++++..........++++.-+|++...++. .++-++.+.|+++|+.++.=. .....|+.--+
T Consensus 128 ~l~~~Gi~v~~vd~~~d~e~l~~~l~~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~~~p~~~Ga 207 (437)
T PRK05613 128 TLNRLGIEVTFVENPDDPESWQAAVQPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAALVRPLELGA 207 (437)
T ss_pred HHHhcCeEEEEECCCCCHHHHHHhCCccCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCccccccChHHhCC
Confidence 3445566666664211111122234455434445555544 788899999999998765311 11123443347
Q ss_pred CEEEEcC
Q 019775 147 DMNVHLP 153 (336)
Q Consensus 147 d~~i~~~ 153 (336)
|+++...
T Consensus 208 Divv~S~ 214 (437)
T PRK05613 208 DVVVASL 214 (437)
T ss_pred CEEEeec
Confidence 8776543
No 347
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=78.91 E-value=40 Score=28.78 Aligned_cols=100 Identities=10% Similarity=0.031 Sum_probs=61.4
Q ss_pred CeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCc-c-cc---------ccccCCCCCCc---EEEEEeCCCCcHHHHHH
Q 019775 55 GTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPL-D-AL---------HGDIGILSSDD---ILVMFSKSGNTEELLKV 120 (336)
Q Consensus 55 ~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~-~-~~---------~~~~~~~~~~d---lvi~iS~sG~~~~~~~~ 120 (336)
++|.++|.|.- |..=...|...|-.+.++.+. . .+ ........++| ..++|..++...--..+
T Consensus 26 ~~VLVVGGG~V---A~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~vN~~I 102 (223)
T PRK05562 26 IKVLIIGGGKA---AFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEKLNNKI 102 (223)
T ss_pred CEEEEECCCHH---HHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHHHHHHH
Confidence 58999998863 333335566678888777532 1 11 11112233333 36677777777667777
Q ss_pred HHHHHHcCCeEEEEeCCCCCcc-----ccccCEEEEcCCCcc
Q 019775 121 VPCAKAKGAYLVSVTSVEGNAL-----AAVCDMNVHLPVERE 157 (336)
Q Consensus 121 ~~~ak~~g~~vi~IT~~~~s~l-----~~~ad~~i~~~~~~~ 157 (336)
.+.|+++|+.+..+++...+.. .+..++.|-++++..
T Consensus 103 ~~~a~~~~~lvn~vd~p~~~dFi~PAiv~rg~l~IaIST~G~ 144 (223)
T PRK05562 103 RKHCDRLYKLYIDCSDYKKGLCIIPYQRSTKNFVFALNTKGG 144 (223)
T ss_pred HHHHHHcCCeEEEcCCcccCeEEeeeEEecCCEEEEEECCCc
Confidence 8899999998888776544432 334466676666544
No 348
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=78.84 E-value=15 Score=34.48 Aligned_cols=120 Identities=10% Similarity=0.147 Sum_probs=62.9
Q ss_pred hcCCh-hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHH-hcCCeeeecCC----ccc--------cccccCCC-C
Q 019775 36 QHLSL-PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLI-SLGIKSGFLNP----LDA--------LHGDIGIL-S 100 (336)
Q Consensus 36 ~~~~~-~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~-~~g~~~~~~~~----~~~--------~~~~~~~~-~ 100 (336)
+.++. +.++.+++.+.+.+ +..++|.|.+..-..++..+|. .+|-.+..... ... .......+ +
T Consensus 58 ~~isWdeAl~~ia~~l~~~~-~~~~~~~~~~~~e~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~di~~ 136 (421)
T TIGR03129 58 KEVSYEEAIEKAAEILKNAK-RPLIYGWSSTSCEAQRAGLELAEKLGAVIDNTASVCHGPSLLALQEVGWPSCTLGEVKN 136 (421)
T ss_pred eeCChHHHHHHHHHHHHhhc-CCeEEEcccCCHHHHHHHHHHHHHHCCCccccchhccccHHHHHHhcCCccccHHHHhh
Confidence 34443 55777777777773 5566776654433333444443 34443211100 000 00011123 2
Q ss_pred CCcEEEEEeCCCC-c-HHHH-HH-------HHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775 101 SDDILVMFSKSGN-T-EELL-KV-------VPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE 157 (336)
Q Consensus 101 ~~dlvi~iS~sG~-~-~~~~-~~-------~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~ 157 (336)
+-|++|++...-. + +... +. ++..+++|++++.|-. ..++.+..||..+.+..+.+
T Consensus 137 ~ad~il~~G~n~~~~~p~~~~r~~~~~~~~~~~~~~~g~~lividp-~~s~t~~~ad~~l~i~pgtd 202 (421)
T TIGR03129 137 RADVIIYWGTNPMHAHPRHMSRYSVFPRGFFTQRGREDRTVIVVDP-RKTDTAKLADYHLQIKPGSD 202 (421)
T ss_pred cCCEEEEEccCccccCchHHhhhhhhhhhhhhhcccCCCEEEEECC-CCCCcchhhcceeccCCCCc
Confidence 5688888854432 2 2111 11 2233367899988854 56777888999988877655
No 349
>PF10432 bact-PGI_C: Bacterial phospho-glucose isomerase C-terminal region; InterPro: IPR019490 Phosphoglucose isomerase (PGI) catalyses the interconversion of phosphoglucose and phosphofructose, and is a component of many sugar metabolic pathways. In some archaea and bacteria PGI activity occurs via a bifunctional enzyme that also exhibits phosphomannose isomerase (PMI) activity. Though not closely related to eukaryotic PGIs, the bifunctional enzyme is similar enough that the sequence includes the cluster of threonines and serines that forms the sugar phosphate-binding site in conventional PGI. This entry represents the C-terminal half of the bifunctional PGI/PMI enzyme, which contains many of the active catalytic site residues. The enzyme is thought to use the same catalytic mechanisms for both glucose ring-opening and isomerisation for the interconversion of glucose 6-phosphate to fructose 6-phosphate [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity; PDB: 1TZB_A 1X9H_A 1TZC_B 1X9I_A 1WIW_A.
Probab=78.49 E-value=14 Score=29.58 Aligned_cols=125 Identities=15% Similarity=0.134 Sum_probs=75.4
Q ss_pred HHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCC-----ccccccccCC--CCCCcEEEEEeCCCCcH
Q 019775 43 TLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNP-----LDALHGDIGI--LSSDDILVMFSKSGNTE 115 (336)
Q Consensus 43 i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~-----~~~~~~~~~~--~~~~dlvi~iS~sG~~~ 115 (336)
-++++..+... .-.++|.+....+|.-+...|++..+...+... ++.+...... .....-++++.-+...+
T Consensus 8 Ak~LA~~L~~~--~Pvi~~~~~~~~vA~R~k~qlnEnAK~~A~~~~lPE~~Hn~i~g~~~~~~~~~~~~~v~l~d~~~~~ 85 (155)
T PF10432_consen 8 AKRLALELAGR--IPVIYGSPLYAAVARRWKQQLNENAKYPAFAAVLPEANHNEIVGWEGPEPPGGRLRVVLLRDPEDHP 85 (155)
T ss_dssp HHHHHHHHTTS--EEEEEECGCGCHHHHHHHHHHHHTT----EEEEETCHHHCHHHCTSS-GGGGTTEEEEEEC-TCCHH
T ss_pred HHHHHHHHcCC--CcEEEECccchHHHHHHHHHHHHHhCCccchhcchhhhhhhhhhccCCcccccceEEEEEEcCCccc
Confidence 34556666663 678999988889999999999988555444332 2222222111 23344567777777776
Q ss_pred HHHHHH----HHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCCh
Q 019775 116 ELLKVV----PCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTR 191 (336)
Q Consensus 116 ~~~~~~----~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~ 191 (336)
....-+ +.++++|+.++-|....++++. -.+...++.|....+++...|.++
T Consensus 86 ~~~~r~~~~~e~~~~~~~~v~~v~~~g~s~l~------------------------rl~~li~l~d~aS~YLA~~~GvDP 141 (155)
T PF10432_consen 86 RVQRRVEITREIAEDRGVRVIEVEAEGGSPLE------------------------RLASLIYLGDYASVYLALLYGVDP 141 (155)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEEE--SCCCHHH------------------------HHHHHHHHHHHHHHHHHHHCT--S
T ss_pred cchhhhHHHHHHHHhcCCcEEEEecCCCCHHH------------------------HHHHHHHHHHHHHHHHHHHhCcCC
Confidence 664444 3455679999998877555553 345567888998888888888776
Q ss_pred HH
Q 019775 192 DE 193 (336)
Q Consensus 192 ~~ 193 (336)
..
T Consensus 142 ~~ 143 (155)
T PF10432_consen 142 TP 143 (155)
T ss_dssp S-
T ss_pred Cc
Confidence 54
No 350
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=78.44 E-value=9.1 Score=38.33 Aligned_cols=93 Identities=18% Similarity=0.205 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCC---chh------hhhHhh-hcCCCCeeeCCCccHHHH
Q 019775 230 IMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGE---GIF------KLTVGE-MCNRSPRTIGPDAMAVEA 299 (336)
Q Consensus 230 v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~---~~~------~~~i~~-~~~~~~~~v~~~~~l~~~ 299 (336)
+++..+.+...+ ..+++.|.+|.++.+....++.......+. ... ...+.- +....|..|.......+.
T Consensus 61 l~~l~~~l~~~~-~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnaig~al~~~~pv~v~g~EH~~~~ 139 (638)
T PRK11388 61 LEDAWEYMADRE-CALLILDETGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSLAAISGQPVKTMGDQHFKQA 139 (638)
T ss_pred HHHHHHHhcCCC-cEEEEEcCCceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHHHHHHhcCCceEEecHHHHHHh
Confidence 455556666555 688899999999999999888876543221 000 011211 224567777777666665
Q ss_pred HHHhcCCCCCccEeEEEeCCCcEEEEEeh
Q 019775 300 MQKMESPPSPVQFLPVINRQNILIGIVTL 328 (336)
Q Consensus 300 ~~~~~~~~~~~~~l~Vv~~~~~~iGiit~ 328 (336)
...+ .....||.|.+|+++|+|+.
T Consensus 140 ~~~~-----~c~aaPI~d~~G~liGvl~l 163 (638)
T PRK11388 140 LHNW-----AFCATPVFDSKGRLTGTIAL 163 (638)
T ss_pred ccCc-----eEEeeEEEcCCCCEEEEEEE
Confidence 5544 45689999999999999964
No 351
>TIGR01580 narG respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens, E.coli and B.subtilis. All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. P
Probab=78.07 E-value=38 Score=36.39 Aligned_cols=56 Identities=14% Similarity=0.221 Sum_probs=39.7
Q ss_pred CCcEEEEEeCC-CCcH-HHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775 101 SDDILVMFSKS-GNTE-ELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE 157 (336)
Q Consensus 101 ~~dlvi~iS~s-G~~~-~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~ 157 (336)
..+++|++... ..+. .....+..++++|+++|+|... .++.++.||..|.+..++.
T Consensus 245 nS~~II~WGsN~~~T~~p~a~~l~eAr~rGaKvVVVDPr-~t~tA~~AD~WLpIrPGTD 302 (1235)
T TIGR01580 245 NSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAITPD-YAEIAKLCDLWLAPKQGTD 302 (1235)
T ss_pred cCCEEEEECCChhhhcchhHHHHHHHHHcCCeEEEEcCC-CChhhHhhCEEeCCCCChH
Confidence 45666666443 2331 1245567799999999999986 5777889999998877655
No 352
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=77.54 E-value=16 Score=33.56 Aligned_cols=58 Identities=17% Similarity=0.258 Sum_probs=41.4
Q ss_pred CCCCcEEEEEeCCC--CcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775 99 LSSDDILVMFSKSG--NTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE 157 (336)
Q Consensus 99 ~~~~dlvi~iS~sG--~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~ 157 (336)
+..-|+++++...- ..+.....+..++++|+++|.|... .++.+..+|..+.+..+.+
T Consensus 154 ~~~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~-~s~t~~~ad~~i~i~pgtd 213 (374)
T cd00368 154 IENADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPR-RTETAAKADEWLPIRPGTD 213 (374)
T ss_pred HhhCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCC-CCcchHhhCEeeCCCCCcH
Confidence 45667888886432 2333456677888899999999975 5666888999988866544
No 353
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=77.16 E-value=12 Score=27.11 Aligned_cols=82 Identities=16% Similarity=0.230 Sum_probs=48.8
Q ss_pred eE-EEEeccchH-HHHHHHHHHHHhcCCeeeecC-CccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEE
Q 019775 56 TI-FFTGVGKSG-FVANKISQTLISLGIKSGFLN-PLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLV 132 (336)
Q Consensus 56 ~I-~i~G~G~s~-~~a~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi 132 (336)
+| .+.|.|.|. .++..+...+.+.|.++.+.. +...... ....-|++++-.+-.+ ..-++-+.+.+.|+++.
T Consensus 5 ~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~---~~~~~Dvill~pqi~~--~~~~i~~~~~~~~ipv~ 79 (95)
T TIGR00853 5 NILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGE---KLDDADVVLLAPQVAY--MLPDLKKETDKKGIPVE 79 (95)
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHh---hcCCCCEEEECchHHH--HHHHHHHHhhhcCCCEE
Confidence 44 667777543 677777777778898876544 2222222 2234465554333332 34444456777899999
Q ss_pred EEeCCCCCcc
Q 019775 133 SVTSVEGNAL 142 (336)
Q Consensus 133 ~IT~~~~s~l 142 (336)
.|....-..+
T Consensus 80 ~I~~~~Y~~m 89 (95)
T TIGR00853 80 VINGAQYGKL 89 (95)
T ss_pred EeChhhcccC
Confidence 9987655443
No 354
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=76.83 E-value=37 Score=27.20 Aligned_cols=124 Identities=13% Similarity=0.107 Sum_probs=70.8
Q ss_pred eEEEEeccchHHHHHHHHHHHHhcCC----eeeecCCcc-------------ccccccCCCCCCcEEEEEeCCCCcHHHH
Q 019775 56 TIFFTGVGKSGFVANKISQTLISLGI----KSGFLNPLD-------------ALHGDIGILSSDDILVMFSKSGNTEELL 118 (336)
Q Consensus 56 ~I~i~G~G~s~~~a~~~~~~l~~~g~----~~~~~~~~~-------------~~~~~~~~~~~~dlvi~iS~sG~~~~~~ 118 (336)
+|+.+|.-.......-+...+.+++. .+..+.+.. +....+..+.+++.+|++.-.|..-...
T Consensus 4 ~i~~vGk~k~~~~~~~~~eY~kRl~~~~~~e~~e~~~~~~~~~~~~~~~~~~E~~~il~~i~~~~~~i~Ld~~Gk~~sS~ 83 (155)
T PF02590_consen 4 RIIAVGKLKEKFLKELIEEYLKRLSRYAKLEIIELKEEKIAKAQSIEKIKEKEGERILKKIPPNDYVILLDERGKQLSSE 83 (155)
T ss_dssp EEEEESSS-SHHHHHHHHHHHHHHCTTSEEEEEEE------TCHHHHHHHHHHHHHHHCTSHTTSEEEEE-TTSEE--HH
T ss_pred EEEEEeccCcHHHHHHHHHHHHHcCccCceeEEEeccccccccccHHHHHHHHHHHHHhhccCCCEEEEEcCCCccCChH
Confidence 45666665565555555555555533 334444433 1112344567999999999999987766
Q ss_pred HHHHHHHH---cCC-eEEEEeCCCCC---ccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcC
Q 019775 119 KVVPCAKA---KGA-YLVSVTSVEGN---ALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARN 188 (336)
Q Consensus 119 ~~~~~ak~---~g~-~vi~IT~~~~s---~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~ 188 (336)
+.++...+ .|. .++.+-+-+.+ .+.+.||..+..+.= .++..++-+++++=||.++.-.++
T Consensus 84 ~fA~~l~~~~~~g~~~i~F~IGG~~G~~~~~~~~a~~~lSLS~m---------TfpH~larlvL~EQiYRA~tI~~g 151 (155)
T PF02590_consen 84 EFAKKLERWMNQGKSDIVFIIGGADGLSEEVRKRADEKLSLSKM---------TFPHQLARLVLLEQIYRAFTILNG 151 (155)
T ss_dssp HHHHHHHHHHHTTS-EEEEEE-BTTB--HHHHHH-SEEEES-SS------------HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCceEEEEEecCCCCCHHHHhhcCceEEEecC---------CCcHHHHHHHHHHHHHHHHHHHcC
Confidence 66665555 665 55555554333 456678988887442 344677888999989888776654
No 355
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=76.39 E-value=38 Score=31.71 Aligned_cols=112 Identities=21% Similarity=0.220 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHcCCCeEEEEeccchHHHHH-----------------------HHHHHHHhcCCeeeecCCccccccccC
Q 019775 41 PHTLTFTQTLLKCRGTIFFTGVGKSGFVAN-----------------------KISQTLISLGIKSGFLNPLDALHGDIG 97 (336)
Q Consensus 41 ~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~-----------------------~~~~~l~~~g~~~~~~~~~~~~~~~~~ 97 (336)
+.+++....+..+ ...+.|.+|.+...+- .+...+.+.|+.+..+.+.+.......
T Consensus 66 ~~lE~~~a~LEg~-~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~ 144 (396)
T COG0626 66 DALEEALAELEGG-EDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAA 144 (396)
T ss_pred HHHHHHHHHhhCC-CcEEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHH
Confidence 4455555555555 3555555555554332 122234567888888876555333333
Q ss_pred CCCCCcEEEEEeCCCC-c---HHHHHHHHHHHHcCCeEEEEeCCCCC-----ccccccCEEEEcCC
Q 019775 98 ILSSDDILVMFSKSGN-T---EELLKVVPCAKAKGAYLVSVTSVEGN-----ALAAVCDMNVHLPV 154 (336)
Q Consensus 98 ~~~~~dlvi~iS~sG~-~---~~~~~~~~~ak~~g~~vi~IT~~~~s-----~l~~~ad~~i~~~~ 154 (336)
...++.-+|.+=.+++ + .++-++.+.||+.| -++.|=|...+ |+.--||+++...+
T Consensus 145 ~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g-~~vvVDNTfatP~~q~PL~~GaDIVvhSaT 209 (396)
T COG0626 145 IKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYG-ALVVVDNTFATPVLQRPLELGADIVVHSAT 209 (396)
T ss_pred hcccCceEEEEeCCCCcccccccHHHHHHHHHhcC-CEEEEECCcccccccChhhcCCCEEEEecc
Confidence 3323444444433333 2 45777889999999 34444444444 45444899987644
No 356
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=76.35 E-value=1.7 Score=43.06 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=49.3
Q ss_pred hhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeC--CCcEEEEEehhhHhh
Q 019775 276 KLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINR--QNILIGIVTLHGLVS 333 (336)
Q Consensus 276 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~--~~~~iGiit~~di~~ 333 (336)
...++++|.++..++..++|..|+.+.++.. .++.+|+|++ +..++|.|.+..+..
T Consensus 587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~--~lR~~PlV~s~esmiLlGSV~R~~L~~ 644 (931)
T KOG0476|consen 587 TVKVEHIMVTDVKYITKDTTYRELREALQTT--TLRSFPLVESKESMILLGSVARRYLTA 644 (931)
T ss_pred EEEeeeeccccceeeeccCcHHHHHHHHHhC--ccceeccccCcccceeeehhHHHHHHH
Confidence 3678999999999999999999999999988 6999999975 357999999988764
No 357
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=76.25 E-value=18 Score=32.20 Aligned_cols=78 Identities=17% Similarity=0.261 Sum_probs=52.3
Q ss_pred EEeccchHHHHHHHHHHHHhc--CCeeeecCCccccccccCCCCCCcEEEEEeCCCCcH---HHHHHHHHHHHcCCe-EE
Q 019775 59 FTGVGKSGFVANKISQTLISL--GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTE---ELLKVVPCAKAKGAY-LV 132 (336)
Q Consensus 59 i~G~G~s~~~a~~~~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~---~~~~~~~~ak~~g~~-vi 132 (336)
+++...+..+|+.++..|.-. .....-+++++........+...|++|+-|....+. +++-+++.+|+.|++ +.
T Consensus 2 i~~~~~~~~la~~ia~~l~~~~~~~~~~~FpdGE~~v~i~~~v~g~~v~i~~~~~~~~d~l~ell~~~~alr~~ga~~i~ 81 (285)
T PRK00934 2 IIGGSASQLLASEVARLLNTELALVETKRFPDGELYVRILGEIDGEDVVIISTTYPQDENLVELLLLIDALRDEGAKSIT 81 (285)
T ss_pred eEeCCCCHHHHHHHHHHHCCceEeeEEEECCCCCEEEEECCCcCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCCeEE
Confidence 455556778999999888633 444455677776665566677788877777665455 344456788999995 44
Q ss_pred EEeC
Q 019775 133 SVTS 136 (336)
Q Consensus 133 ~IT~ 136 (336)
+|..
T Consensus 82 ~v~P 85 (285)
T PRK00934 82 LVIP 85 (285)
T ss_pred EEec
Confidence 5543
No 358
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=76.02 E-value=18 Score=33.83 Aligned_cols=77 Identities=25% Similarity=0.356 Sum_probs=39.8
Q ss_pred HHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCC----cHHHHHHHHHHHHcCCeEEEEeCCC------CCccccc
Q 019775 76 LISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGN----TEELLKVVPCAKAKGAYLVSVTSVE------GNALAAV 145 (336)
Q Consensus 76 l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~----~~~~~~~~~~ak~~g~~vi~IT~~~------~s~l~~~ 145 (336)
+.+.|+.+.++...+. ......++++.-+|.+-..++ ..++-++++.||++| .+++|.+|. ..|+.--
T Consensus 115 l~~~gv~v~~~d~~d~-~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g-~~~~vVDnT~atp~~~~pL~~G 192 (386)
T PF01053_consen 115 LPRFGVEVTFVDPTDL-EALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHG-DILVVVDNTFATPYNQNPLELG 192 (386)
T ss_dssp HHHTTSEEEEESTTSH-HHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTT-T-EEEEECTTTHTTTC-GGGGT
T ss_pred hcccCcEEEEeCchhH-HHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhC-CceEEeeccccceeeeccCcCC
Confidence 4556777777653221 111222334444444433333 467888899999999 334444433 3356555
Q ss_pred cCEEEEcCC
Q 019775 146 CDMNVHLPV 154 (336)
Q Consensus 146 ad~~i~~~~ 154 (336)
||+++...+
T Consensus 193 aDivv~S~T 201 (386)
T PF01053_consen 193 ADIVVHSAT 201 (386)
T ss_dssp -SEEEEETT
T ss_pred ceEEEeecc
Confidence 899987644
No 359
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=75.89 E-value=17 Score=33.11 Aligned_cols=85 Identities=9% Similarity=0.042 Sum_probs=59.0
Q ss_pred HcCCCeEEEEeccchHHHHHHHHHHHHhc--CCeeeecCCccccccccCCCCCCcEEEEEeCCCC-cHHH---HHHHHHH
Q 019775 51 LKCRGTIFFTGVGKSGFVANKISQTLISL--GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGN-TEEL---LKVVPCA 124 (336)
Q Consensus 51 ~~a~~~I~i~G~G~s~~~a~~~~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~-~~~~---~~~~~~a 124 (336)
..+ +...+++..++..+|..++.+|.-. .....-+++++........+..+|++|+-|.+.. +..+ +-++..+
T Consensus 17 ~~~-~~~~i~~g~~~~~la~~ia~~lg~~l~~~~~~~FpDGE~~v~i~~~vrg~~V~ivqs~~~p~nd~l~eLll~~~al 95 (330)
T PRK02812 17 SDN-NRLRLFSGSSNPALAQEVARYLGMDLGPMIRKRFADGELYVQIQESIRGCDVYLIQPTCAPVNDHLMELLIMVDAC 95 (330)
T ss_pred cCC-CCEEEEECCCCHHHHHHHHHHhCCCceeeEEEECCCCCEEEEeCCCCCCCEEEEECCCCCCccHHHHHHHHHHHHH
Confidence 445 4778888777889999999998733 3334446677766666667777888888886544 4444 4456788
Q ss_pred HHcCCe-EEEEeC
Q 019775 125 KAKGAY-LVSVTS 136 (336)
Q Consensus 125 k~~g~~-vi~IT~ 136 (336)
|+.|++ +.+|..
T Consensus 96 r~~ga~ri~~ViP 108 (330)
T PRK02812 96 RRASARQITAVIP 108 (330)
T ss_pred HHhCCceEEEEEe
Confidence 999986 556654
No 360
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=75.30 E-value=23 Score=31.87 Aligned_cols=81 Identities=15% Similarity=0.100 Sum_probs=60.3
Q ss_pred CeEEEEeccchHHHHHHHHHHHHhc-CC-eeeecCCccccccccCCCCCCcEEEEEeCCCCc-HH---HHHHHHHHHHcC
Q 019775 55 GTIFFTGVGKSGFVANKISQTLISL-GI-KSGFLNPLDALHGDIGILSSDDILVMFSKSGNT-EE---LLKVVPCAKAKG 128 (336)
Q Consensus 55 ~~I~i~G~G~s~~~a~~~~~~l~~~-g~-~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~-~~---~~~~~~~ak~~g 128 (336)
+...+|+..++..+|+..+..|.-. |. .+.-+++++........+...|++|+=|.++.. .. ++-++..+|..|
T Consensus 3 ~~~~if~g~s~~~La~~ia~~l~~~l~~~~~~rF~DGE~~V~i~EsVrg~dVfI~qs~~~pvnd~lmELLi~idA~k~as 82 (314)
T COG0462 3 NNMKIFSGSSNPELAEKIAKRLGIPLGKVEVKRFPDGEIYVRIEESVRGKDVFIIQSTSPPVNDNLMELLIMIDALKRAS 82 (314)
T ss_pred CceEEEECCCCHHHHHHHHHHhCCCcccceeEEcCCCcEEEEecccccCCeEEEEeCCCCCcCHHHHHHHHHHHHHHhcC
Confidence 3678899899999999999988744 33 334567888877777888899999777888733 33 455568899988
Q ss_pred CeEEEEe
Q 019775 129 AYLVSVT 135 (336)
Q Consensus 129 ~~vi~IT 135 (336)
++-|.+-
T Consensus 83 A~~It~V 89 (314)
T COG0462 83 AKRITAV 89 (314)
T ss_pred CceEEEE
Confidence 8766543
No 361
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=74.76 E-value=52 Score=34.01 Aligned_cols=115 Identities=16% Similarity=0.081 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHh-cCCeeee-----cCC---------ccccccccCCCCCCcE
Q 019775 40 LPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLIS-LGIKSGF-----LNP---------LDALHGDIGILSSDDI 104 (336)
Q Consensus 40 ~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~-~g~~~~~-----~~~---------~~~~~~~~~~~~~~dl 104 (336)
+..++++++.+.++ +.|.+ + |....=-.|+..+|.+ +|.+.+- ... +......+..+..-|+
T Consensus 297 e~A~deA~e~lk~~-~aI~~-S-~~~TNEE~YllqKLar~lgtnnvD~~aR~~~~~~~~l~~~~G~~~t~sl~DI~~AD~ 373 (819)
T PRK08493 297 EKAFKEAVEAFKEA-KAIKF-N-SFITNEEALILQRLKKKFGLKLINEEALKFQQFLKVFSEVSGKSYSANLEDIKTSDF 373 (819)
T ss_pred HHHHHHHHHHHhhC-CEEEe-c-CCCCHHHHHHHHHHHHHhCCCCccchhhhhhHHHHHHHHhcCCCCCCCHHHHhhCCE
Confidence 67888888888887 46755 2 2322333444444443 3433220 000 0001122334566788
Q ss_pred EEEE-eCCCCc-HHHHHHHHHH-HHcCCeEEEEeCCCCCccccccCEE--EEcCCCcc
Q 019775 105 LVMF-SKSGNT-EELLKVVPCA-KAKGAYLVSVTSVEGNALAAVCDMN--VHLPVERE 157 (336)
Q Consensus 105 vi~i-S~sG~~-~~~~~~~~~a-k~~g~~vi~IT~~~~s~l~~~ad~~--i~~~~~~~ 157 (336)
+|++ |...+. +-+-..++.| +++|+++|.|-+.....+.++++.. +.+..+.+
T Consensus 374 IlviGsN~~e~hPvl~~~I~~A~k~~gaklIvidPr~~~~~~~~a~~~~~l~~~PGtd 431 (819)
T PRK08493 374 VVVAGSALKTDNPLLRYAINNALKMNKASGLYFHPIKDNVIANLSKNFFCITHEVGAE 431 (819)
T ss_pred EEEECCChhhhCHHHHHHHHHHHHhCCCeEEEEecCCchhhhhhhhcceEeecCCCcH
Confidence 8888 444443 3344445555 5689999998877666667766644 44444444
No 362
>PTZ00445 p36-lilke protein; Provisional
Probab=74.41 E-value=17 Score=30.68 Aligned_cols=76 Identities=18% Similarity=0.100 Sum_probs=51.0
Q ss_pred chHHHHHHHHHHHHhcCCeeeecC-Cccccccc-cCCCCCC-cEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCC
Q 019775 64 KSGFVANKISQTLISLGIKSGFLN-PLDALHGD-IGILSSD-DILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGN 140 (336)
Q Consensus 64 ~s~~~a~~~~~~l~~~g~~~~~~~-~~~~~~~~-~~~~~~~-dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s 140 (336)
+..-.|.-|...|.+.|++++... |.+.+..- -+..+++ |.-. +.. .-+++....++.+++.|++++.+|=+...
T Consensus 26 ~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~-~~~-~~tpefk~~~~~l~~~~I~v~VVTfSd~~ 103 (219)
T PTZ00445 26 NPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIR-VLT-SVTPDFKILGKRLKNSNIKISVVTFSDKE 103 (219)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhh-hhc-cCCHHHHHHHHHHHHCCCeEEEEEccchh
Confidence 556788999999999999999886 44443311 1133333 2211 222 23567888999999999999999976543
Q ss_pred c
Q 019775 141 A 141 (336)
Q Consensus 141 ~ 141 (336)
.
T Consensus 104 ~ 104 (219)
T PTZ00445 104 L 104 (219)
T ss_pred h
Confidence 3
No 363
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=74.33 E-value=7.3 Score=33.78 Aligned_cols=53 Identities=25% Similarity=0.213 Sum_probs=43.8
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEc
Q 019775 99 LSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHL 152 (336)
Q Consensus 99 ~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~ 152 (336)
+.+-|++|++-.|....-...+...++++|++++.|-..+. +....+|..+..
T Consensus 170 ~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~~-~~~~~~~~~i~g 222 (242)
T PTZ00408 170 MSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEEG-TNYSQFDESIYG 222 (242)
T ss_pred HHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCCC-CCCccCCEEEEC
Confidence 66789999999999999999999999999999999986543 444567877653
No 364
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=74.10 E-value=25 Score=31.90 Aligned_cols=82 Identities=10% Similarity=-0.035 Sum_probs=56.0
Q ss_pred CeEEEEeccchHHHHHHHHHHHH--hc-CCeeeecCCcc--ccccccCCCCCCcEEEEEeCCCCcHHHHHH---HHHHHH
Q 019775 55 GTIFFTGVGKSGFVANKISQTLI--SL-GIKSGFLNPLD--ALHGDIGILSSDDILVMFSKSGNTEELLKV---VPCAKA 126 (336)
Q Consensus 55 ~~I~i~G~G~s~~~a~~~~~~l~--~~-g~~~~~~~~~~--~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~---~~~ak~ 126 (336)
+...+++...|..+|+.++..+. .+ .....-+++++ ........+...|++|+-|.++. .++.++ +..+|+
T Consensus 15 ~~~~i~~g~~~~~LA~~ia~~l~g~~l~~~~~~~FpDGE~~v~v~~~~~vrg~~V~ivqs~~~p-d~lmELLl~~dAlr~ 93 (326)
T PLN02297 15 KQVHLFYCEETEELARKIAAESDAIELGSINWRKFPDGFPNLFINNAHGIRGQHVAFLASFSSP-AVIFEQLSVIYALPK 93 (326)
T ss_pred CCeEEEECCCCHHHHHHHHHHhCCCceeeeEEEECCCCCEEEEEcCCCCcCCCeEEEECCCCCC-hHHHHHHHHHHHHHH
Confidence 57889998899999999999863 33 44555566763 22222245667888898887755 555555 578888
Q ss_pred cCCe-EEEEeCC
Q 019775 127 KGAY-LVSVTSV 137 (336)
Q Consensus 127 ~g~~-vi~IT~~ 137 (336)
.|++ +.+|..+
T Consensus 94 ~ga~~i~~ViPY 105 (326)
T PLN02297 94 LFVASFTLVLPF 105 (326)
T ss_pred cCCCEEEEEeeC
Confidence 8985 6666643
No 365
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=74.09 E-value=29 Score=30.72 Aligned_cols=38 Identities=13% Similarity=-0.005 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEc
Q 019775 115 EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHL 152 (336)
Q Consensus 115 ~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~ 152 (336)
.+=.++++.+.+.|+++..||++.-+-+-+.+|.++.-
T Consensus 147 ~qG~~la~eL~~~GI~vtlI~Dsa~~~~m~~vd~VivG 184 (275)
T PRK08335 147 YEGLALANELEFLGIEFEVITDAQLGLFAKEATLALVG 184 (275)
T ss_pred hhHHHHHHHHHHCCCCEEEEeccHHHHHHHhCCEEEEC
Confidence 34455688999999999999999888887889999864
No 366
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=74.04 E-value=23 Score=33.46 Aligned_cols=82 Identities=9% Similarity=0.163 Sum_probs=58.8
Q ss_pred CeEEEEeccchHHHHHHHHHHHHhc--CCeeeecCCccccccccCCCCCCcEEEEEeCCCC-cHHHHH---HHHHHHHcC
Q 019775 55 GTIFFTGVGKSGFVANKISQTLISL--GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGN-TEELLK---VVPCAKAKG 128 (336)
Q Consensus 55 ~~I~i~G~G~s~~~a~~~~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~-~~~~~~---~~~~ak~~g 128 (336)
+...+++...+..+|+.++..|.-- ...+.-+++++........+...|++|+=|.+.. +..+.+ ++..+|+.|
T Consensus 118 ~~m~I~sgs~~~~LA~~IA~~Lg~~l~~~~~~rFpDGE~~Vri~e~VrG~dV~IVqS~~~pvNd~LmELLllidAlr~ag 197 (439)
T PTZ00145 118 ENAILFSGSSNPLLSKNIADHLGTILGRVHLKRFADGEVSMQFLESIRGKDVYIIQPTCPPVNENLIELLLMISTCRRAS 197 (439)
T ss_pred CCeEEEECCCCHHHHHHHHHHhCCCceeeEEEECCCCCEEEEECCCcCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHhc
Confidence 4677887777889999999988732 4444557778776666677777899999887665 444444 467889999
Q ss_pred Ce-EEEEeC
Q 019775 129 AY-LVSVTS 136 (336)
Q Consensus 129 ~~-vi~IT~ 136 (336)
++ |.+|-.
T Consensus 198 AkrItlViP 206 (439)
T PTZ00145 198 AKKITAVIP 206 (439)
T ss_pred cCeEEEEee
Confidence 96 555554
No 367
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=73.56 E-value=19 Score=32.37 Aligned_cols=90 Identities=9% Similarity=0.113 Sum_probs=66.5
Q ss_pred HHHHHHHH----HcCCCeE-EEEeccc--hHHHHHHHHHHHHhcCCeeeecC--CccccccccCCC-CCCcEEEEEeCCC
Q 019775 43 TLTFTQTL----LKCRGTI-FFTGVGK--SGFVANKISQTLISLGIKSGFLN--PLDALHGDIGIL-SSDDILVMFSKSG 112 (336)
Q Consensus 43 i~~~~~~i----~~a~~~I-~i~G~G~--s~~~a~~~~~~l~~~g~~~~~~~--~~~~~~~~~~~~-~~~dlvi~iS~sG 112 (336)
+++-+++| -++ ++| ++|+.|. |....+++.....+.|+.++... ...+.......+ ++.|++++-.-.-
T Consensus 145 v~q~i~lik~~~Pna-k~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~ 223 (322)
T COG2984 145 VAQQIELIKALLPNA-KSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTDNL 223 (322)
T ss_pred HHHHHHHHHHhCCCC-eeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEEecchH
Confidence 44444433 477 588 9999986 77899999999999999998754 455555455555 6778877776666
Q ss_pred CcHHHHHHHHHHHHcCCeEEE
Q 019775 113 NTEELLKVVPCAKAKGAYLVS 133 (336)
Q Consensus 113 ~~~~~~~~~~~ak~~g~~vi~ 133 (336)
-....-.++..+.++++++++
T Consensus 224 i~s~~~~l~~~a~~~kiPli~ 244 (322)
T COG2984 224 IVSAIESLLQVANKAKIPLIA 244 (322)
T ss_pred HHHHHHHHHHHHHHhCCCeec
Confidence 666777788899999888875
No 368
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=73.51 E-value=6.2 Score=27.38 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=33.0
Q ss_pred cEEEEEeCCCCcH---HHHHHHHHHHHcCCeEEEEeCCCCCccccccCE
Q 019775 103 DILVMFSKSGNTE---ELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDM 148 (336)
Q Consensus 103 dlvi~iS~sG~~~---~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~ 148 (336)
.-+-++...|+.- ..-++++.|++.|...|.|..+...|++++.|+
T Consensus 13 ~~VrlI~~~g~~lGv~~~~eAl~~A~~~~lDLV~v~~~~~PPVcKi~dy 61 (76)
T PF05198_consen 13 PEVRLIDEDGEQLGVMSLREALRLAKEKGLDLVEVSPNADPPVCKIMDY 61 (76)
T ss_dssp SEEEEE-TTS-EEEEEEHHHHHHHHHHTT-EEEEEETTSSS-EEEEE-H
T ss_pred CEEEEECCCCcEeceEEHHHHHHHHHHcCCcEEEEcCCCCCCeEEEech
Confidence 3455566666653 478899999999999999999999999888774
No 369
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=73.17 E-value=30 Score=32.88 Aligned_cols=52 Identities=17% Similarity=0.138 Sum_probs=32.9
Q ss_pred CCCCcEEEEE-eCC---CCcHHHHHHHHHHHHcCCeEEEEeCCC------CCccccccCEEEEc
Q 019775 99 LSSDDILVMF-SKS---GNTEELLKVVPCAKAKGAYLVSVTSVE------GNALAAVCDMNVHL 152 (336)
Q Consensus 99 ~~~~dlvi~i-S~s---G~~~~~~~~~~~ak~~g~~vi~IT~~~------~s~l~~~ad~~i~~ 152 (336)
++++.-+|++ +-+ |...++-++.+.|+++|+.+|. ++. ..|+..-+|+++..
T Consensus 152 i~~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liV--D~t~a~~~~~~pl~~GaDivv~S 213 (436)
T PRK07812 152 VRPNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIV--DNTIATPYLIRPLEHGADIVVHS 213 (436)
T ss_pred CCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEE--ECCCcccccCCchhcCCCEEEEe
Confidence 4444434443 333 7888999999999999986553 332 23444458887643
No 370
>PRK08105 flavodoxin; Provisional
Probab=73.14 E-value=16 Score=28.96 Aligned_cols=69 Identities=20% Similarity=0.325 Sum_probs=42.5
Q ss_pred EEEEec--cchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCc---HHHHHHHHHHHHc
Q 019775 57 IFFTGV--GKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNT---EELLKVVPCAKAK 127 (336)
Q Consensus 57 I~i~G~--G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~---~~~~~~~~~ak~~ 127 (336)
.++||+ |++..+|+.++..+.+.|..+.+.+..+ .. .......+-++++.|..|.- .+.....+.+++.
T Consensus 5 ~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~-~~-~~~~~~~~~vi~~~sT~G~Ge~p~~~~~f~~~l~~~ 78 (149)
T PRK08105 5 GIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPE-LS-DWQPYQDELVLVVTSTTGQGDLPDSIVPLFQALKDT 78 (149)
T ss_pred EEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhh-CC-chhcccCCeEEEEECCCCCCCCChhHHHHHHHHHhc
Confidence 455665 7788999999999999999988775322 11 11112234566666665543 3345555555543
No 371
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=73.03 E-value=12 Score=28.98 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCCCeEEEEeccchH-HHHHHHHHHHHhcCCeeeecCCc
Q 019775 43 TLTFTQTLLKCRGTIFFTGVGKSG-FVANKISQTLISLGIKSGFLNPL 89 (336)
Q Consensus 43 i~~~~~~i~~a~~~I~i~G~G~s~-~~a~~~~~~l~~~g~~~~~~~~~ 89 (336)
+++++++|.++++-++++|.|..+ .....+.....+.|.++......
T Consensus 1 i~~~~~~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~ 48 (137)
T PF00205_consen 1 IDEAADLLSSAKRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMG 48 (137)
T ss_dssp HHHHHHHHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGG
T ss_pred CHHHHHHHHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCcc
Confidence 578999999998788888888765 56666666666779999765533
No 372
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=72.92 E-value=12 Score=30.65 Aligned_cols=78 Identities=28% Similarity=0.415 Sum_probs=50.7
Q ss_pred HcCCCeEEEEeccchH--HHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHc-
Q 019775 51 LKCRGTIFFTGVGKSG--FVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAK- 127 (336)
Q Consensus 51 ~~a~~~I~i~G~G~s~--~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~- 127 (336)
.+. ..|++.|--.|. .+|..+..+|...|+.++.+ |++.+.+.+. + | +.||.-+...++.+.++.||..
T Consensus 21 ~~~-~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~L-DGDnvR~gL~---~-d--LgFs~edR~eniRRvaevAkll~ 92 (197)
T COG0529 21 QKG-AVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLL-DGDNVRHGLN---R-D--LGFSREDRIENIRRVAEVAKLLA 92 (197)
T ss_pred CCC-eEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEe-cChhHhhccc---C-C--CCCChHHHHHHHHHHHHHHHHHH
Confidence 344 488888875544 89999999999999999999 4554443332 1 2 2366666667777776666653
Q ss_pred CCeEEEEeC
Q 019775 128 GAYLVSVTS 136 (336)
Q Consensus 128 g~~vi~IT~ 136 (336)
.+-+|+||+
T Consensus 93 daG~iviva 101 (197)
T COG0529 93 DAGLIVIVA 101 (197)
T ss_pred HCCeEEEEE
Confidence 233444553
No 373
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=72.63 E-value=50 Score=30.14 Aligned_cols=138 Identities=18% Similarity=0.180 Sum_probs=82.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCChh------HHHHHHHHHHc-CC--CeEEEEeccchH--HHHHHHHHHHHhcCCeee
Q 019775 16 SENTLLDLFKSQQDHLNYFFQHLSLP------HTLTFTQTLLK-CR--GTIFFTGVGKSG--FVANKISQTLISLGIKSG 84 (336)
Q Consensus 16 ~~~~~~~~~~~~~~~l~~~~~~~~~~------~i~~~~~~i~~-a~--~~I~i~G~G~s~--~~a~~~~~~l~~~g~~~~ 84 (336)
.+++++.+.+....++.+....+... ....+.+.+.. .+ ..|.+.|...+. .++..+...|...|.++.
T Consensus 9 ~~~l~~~~~~g~~~a~a~~it~~e~~~~~~~~~~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~ 88 (332)
T PRK09435 9 VDELVEGVLAGDRAALARAITLVESTRPDHRALAQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVA 88 (332)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhCCCchhhHHHHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 55677777777777777766666321 13455555542 21 357777764433 556777788888888887
Q ss_pred ecC--Cccccc--------cccCCCCCCcEEEEEeC------CCCcHHHHHHHHHHHHcCCeEEEEeCCC----CCcccc
Q 019775 85 FLN--PLDALH--------GDIGILSSDDILVMFSK------SGNTEELLKVVPCAKAKGAYLVSVTSVE----GNALAA 144 (336)
Q Consensus 85 ~~~--~~~~~~--------~~~~~~~~~dlvi~iS~------sG~~~~~~~~~~~ak~~g~~vi~IT~~~----~s~l~~ 144 (336)
.+. +..... ..+..+..+.-+++.|. .|-+..+.++++.+...|..++.|=... ...+..
T Consensus 89 vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~i~~ 168 (332)
T PRK09435 89 VLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVARKTRETMLLCEAAGYDVILVETVGVGQSETAVAG 168 (332)
T ss_pred EEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccchHHHHHHHHHHHhccCCCEEEEECCCCccchhHHHH
Confidence 654 222210 01111223223344442 2345678888999999999988875432 335678
Q ss_pred ccCEEEEcC
Q 019775 145 VCDMNVHLP 153 (336)
Q Consensus 145 ~ad~~i~~~ 153 (336)
.||.++++-
T Consensus 169 ~aD~vlvv~ 177 (332)
T PRK09435 169 MVDFFLLLQ 177 (332)
T ss_pred hCCEEEEEe
Confidence 899988773
No 374
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=72.60 E-value=17 Score=28.15 Aligned_cols=75 Identities=20% Similarity=0.179 Sum_probs=49.0
Q ss_pred EEEEeccchH-HHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCc---HHHHHHHHHHHHcCCeEE
Q 019775 57 IFFTGVGKSG-FVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNT---EELLKVVPCAKAKGAYLV 132 (336)
Q Consensus 57 I~i~G~G~s~-~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~---~~~~~~~~~ak~~g~~vi 132 (336)
+|+.|.|... .++.-+...|.+.|.++.++.+... .|++++=...|-. .+-...++.+++.+++++
T Consensus 3 ~~~~~~~~Gkt~~~~~l~~~l~~~~~~v~~~kp~~~----------~d~vliEGaGg~~~p~~~~~~~~d~~~~~~~~vl 72 (134)
T cd03109 3 GFGTGTDIGKTVATAILARALKEKGYRVAPLKPVQT----------YDFVLVEGAGGLCVPLKEDFTNADVAKELNLPAI 72 (134)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHHCCCeEEEEecCCC----------CCEEEEECCCccccCCCCCCCHHHHHHHhCCCEE
Confidence 5677777433 7777788999999999988765443 3555544432222 111235677788899999
Q ss_pred EEeCCCCCc
Q 019775 133 SVTSVEGNA 141 (336)
Q Consensus 133 ~IT~~~~s~ 141 (336)
++++.....
T Consensus 73 lV~~~~~g~ 81 (134)
T cd03109 73 LVTSAGLGS 81 (134)
T ss_pred EEEcCCCCc
Confidence 999875543
No 375
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.08 E-value=17 Score=34.65 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=24.2
Q ss_pred CeEEEEeccchHHHHHHHHHHHHhcCCeeeecC
Q 019775 55 GTIFFTGVGKSGFVANKISQTLISLGIKSGFLN 87 (336)
Q Consensus 55 ~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~ 87 (336)
++|+|+|.|.|...+ +..|.+.|..+....
T Consensus 10 ~~i~viG~G~~G~~~---a~~l~~~G~~v~~~D 39 (460)
T PRK01390 10 KTVAVFGLGGSGLAT---ARALVAGGAEVIAWD 39 (460)
T ss_pred CEEEEEeecHhHHHH---HHHHHHCCCEEEEEC
Confidence 489999999998754 566788898887765
No 376
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=72.06 E-value=4.8 Score=32.51 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=29.2
Q ss_pred CCCcHHHHHH-HHHHHHcCCeEEEEeCCCCCcccc
Q 019775 111 SGNTEELLKV-VPCAKAKGAYLVSVTSVEGNALAA 144 (336)
Q Consensus 111 sG~~~~~~~~-~~~ak~~g~~vi~IT~~~~s~l~~ 144 (336)
.|+..+++++ ++.|++.|++-|.||+..+++-++
T Consensus 112 KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN~ASr 146 (174)
T COG3981 112 KGYAKEMLKLALEKARELGIKKVLVTCDKDNIASR 146 (174)
T ss_pred cCHHHHHHHHHHHHHHHcCCCeEEEEeCCCCchhh
Confidence 4677888887 799999999999999999888754
No 377
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=71.99 E-value=19 Score=26.40 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=46.6
Q ss_pred EEEeccc-hHHHHHHHHHHHHhcCCeeeecC-CccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEe
Q 019775 58 FFTGVGK-SGFVANKISQTLISLGIKSGFLN-PLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVT 135 (336)
Q Consensus 58 ~i~G~G~-s~~~a~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT 135 (336)
.+.|.|. |..+++.+...+...|.++.... +...... ..+.-|++++--+-++ ..-++-+.+...|+++..|.
T Consensus 5 l~C~~GaSSs~la~km~~~a~~~gi~~~i~a~~~~e~~~---~~~~~Dvill~PQv~~--~~~~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 5 VLCAGGGTSGLLANALNKGAKERGVPLEAAAGAYGSHYD---MIPDYDLVILAPQMAS--YYDELKKDTDRLGIKLVTTT 79 (99)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHHH---hccCCCEEEEcChHHH--HHHHHHHHhhhcCCCEEEeC
Confidence 4556664 55899999999999999886543 3333322 2334565554333332 23334457778899999887
Q ss_pred CC
Q 019775 136 SV 137 (336)
Q Consensus 136 ~~ 137 (336)
..
T Consensus 80 ~~ 81 (99)
T cd05565 80 GK 81 (99)
T ss_pred HH
Confidence 43
No 378
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=71.77 E-value=37 Score=32.25 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=33.8
Q ss_pred CCCCcEEEEEeCCCCc----HHHHHHHHHHHHcCCeEEEEeCCCC------CccccccCEEEEc
Q 019775 99 LSSDDILVMFSKSGNT----EELLKVVPCAKAKGAYLVSVTSVEG------NALAAVCDMNVHL 152 (336)
Q Consensus 99 ~~~~dlvi~iS~sG~~----~~~~~~~~~ak~~g~~vi~IT~~~~------s~l~~~ad~~i~~ 152 (336)
++++.-+|++...++. .++-++.+.|+++|+.+|. ++.. .|+.--+|+++..
T Consensus 146 i~~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~liv--D~t~a~~~~~~pl~~GaD~vv~S 207 (433)
T PRK08134 146 IRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLV--DSTFTTPYLLRPFEHGADLVYHS 207 (433)
T ss_pred cCCCCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEE--ECCCcccccCCchhcCCCEEEec
Confidence 4555556666666665 7888999999999988764 2222 2343347876544
No 379
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=71.59 E-value=1.1e+02 Score=30.30 Aligned_cols=136 Identities=14% Similarity=0.061 Sum_probs=68.5
Q ss_pred hHHHHHHHHH----HcCCCeEEEEeccchH--HHHHHHHHHHHhcCC-ee-eecCCc----ccc-ccccCCC--CCCcEE
Q 019775 41 PHTLTFTQTL----LKCRGTIFFTGVGKSG--FVANKISQTLISLGI-KS-GFLNPL----DAL-HGDIGIL--SSDDIL 105 (336)
Q Consensus 41 ~~i~~~~~~i----~~a~~~I~i~G~G~s~--~~a~~~~~~l~~~g~-~~-~~~~~~----~~~-~~~~~~~--~~~dlv 105 (336)
.+++++++.| .+. ++|.|+|---.- ..+-.+...|.++|. .+ +.+++. ..+ ...+..+ ..-+++
T Consensus 53 ~~m~~a~~ri~~ai~~~-e~I~I~gDyD~DGitstail~~~L~~~g~~~~~~~IP~R~~eGYGl~~~~i~~~~~~~~~Li 131 (575)
T PRK11070 53 SGIEKAVELLYNALREG-TRIIVVGDFDADGATSTALSVLALRSLGCSNVDYLVPNRFEDGYGLSPEVVDQAHARGAQLI 131 (575)
T ss_pred hCHHHHHHHHHHHHHCC-CEEEEEEecCccHHHHHHHHHHHHHHcCCCceEEEeCCCCcCCCCCCHHHHHHHHhcCCCEE
Confidence 3455555554 455 699999974311 223334555777887 34 445521 111 1111112 223666
Q ss_pred EEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCc-cccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHH
Q 019775 106 VMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNA-LAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAM 183 (336)
Q Consensus 106 i~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~-l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~ 183 (336)
|.+...-. -.+.++.|++.|+.+| ||+....+ -.+-|+.++ -|.. ..+.+....++.--..+.++..|...+
T Consensus 132 ItvD~Gi~---~~e~i~~a~~~gidvI-VtDHH~~~~~~P~a~a~i-NP~~-~~~~yp~~~L~g~Gvaf~l~~al~~~l 204 (575)
T PRK11070 132 VTVDNGIS---SHAGVAHAHALGIPVL-VTDHHLPGETLPAADAII-NPNL-RDCNFPSKSLAGVGVAFYLMLALRAFL 204 (575)
T ss_pred EEEcCCcC---CHHHHHHHHHCCCCEE-EECCCCCCCCCCCCeEEE-CCCC-cCCCCCCCcchHHHHHHHHHHHHHHHh
Confidence 66654433 3456677888999986 45554332 123344433 2332 212233344555555566666665554
No 380
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=71.14 E-value=21 Score=31.60 Aligned_cols=41 Identities=7% Similarity=-0.134 Sum_probs=31.0
Q ss_pred cHHHHHHHHHHHHcCCeEEEEeCCCCCccccc-cCEEEEcCC
Q 019775 114 TEELLKVVPCAKAKGAYLVSVTSVEGNALAAV-CDMNVHLPV 154 (336)
Q Consensus 114 ~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~-ad~~i~~~~ 154 (336)
..+-...++.+.+.|+++..|+++.-..+.+. +|.++.-..
T Consensus 144 ~~eG~~~a~~L~~~gi~v~~i~d~~~~~~m~~~vd~VliGad 185 (282)
T PF01008_consen 144 YNEGRLMAKELAEAGIPVTLIPDSAVGYVMPRDVDKVLIGAD 185 (282)
T ss_dssp TTHHHTHHHHHHHTT-EEEEE-GGGHHHHHHCTESEEEEE-S
T ss_pred chhhhhHHHHhhhcceeEEEEechHHHHHHHHhCCeeEEeee
Confidence 33446788889999999999999988888888 999886533
No 381
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=70.89 E-value=12 Score=31.81 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=44.4
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEE
Q 019775 98 ILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVH 151 (336)
Q Consensus 98 ~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~ 151 (336)
.+.+-|++|++-.|....-...+++.++++|+++|.|-. ...+....+|+.+.
T Consensus 164 ~~~~~Dl~lvlGTSl~V~p~~~l~~~~~~~~~~~i~iN~-~~~~~~~~~d~~~~ 216 (218)
T cd01407 164 ALAKADLLLVIGTSLQVYPAAGLPLYAPERGAPVVIINL-EPTPADRKADLVIL 216 (218)
T ss_pred HHhcCCEEEEeCCCcccccHHHHHHHHHHCCCeEEEECC-CCCCCCccceEEEe
Confidence 355679999999999999999999999999999999975 46666677887764
No 382
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=70.24 E-value=1.1e+02 Score=29.92 Aligned_cols=93 Identities=12% Similarity=0.128 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHcCCCeEEEEecc--chHHHHHHHHHHHHhcCCeeeecCCcc--c---cc-cccCCC--CCCcEEEEEeC
Q 019775 41 PHTLTFTQTLLKCRGTIFFTGVG--KSGFVANKISQTLISLGIKSGFLNPLD--A---LH-GDIGIL--SSDDILVMFSK 110 (336)
Q Consensus 41 ~~i~~~~~~i~~a~~~I~i~G~G--~s~~~a~~~~~~l~~~g~~~~~~~~~~--~---~~-~~~~~~--~~~dlvi~iS~ 110 (336)
+.++++.+.|.+. ++|.++|-- -+-..+.-+...|.++|+++.++-+.. . +. ...... ...|++|++-.
T Consensus 42 ~a~~~i~~~i~~~-~~I~I~gh~D~DGi~S~~~L~~~L~~~g~~v~~~ip~r~~~~yg~~~~~i~~~~~~~~~LiI~vD~ 120 (539)
T TIGR00644 42 KAVERIIEAIENN-EKILIFGDYDVDGITSTAILVEFLKDLGVNVDYYIPNRITEGYGLSPEALREAIENGVSLIITVDN 120 (539)
T ss_pred HHHHHHHHHHhcC-CeEEEEEccCCCcHHHHHHHHHHHHHCCCceEEEeCCCCcccCCCCHHHHHHHHhcCCCEEEEeCC
Confidence 3455566666777 699999862 233455556667788898876543211 1 00 101111 23478877766
Q ss_pred CCCcHHHHHHHHHHHHcCCeEEEEeCCC
Q 019775 111 SGNTEELLKVVPCAKAKGAYLVSVTSVE 138 (336)
Q Consensus 111 sG~~~~~~~~~~~ak~~g~~vi~IT~~~ 138 (336)
+-....- ++.++++|.++|.| +..
T Consensus 121 G~~~~~~---~~~~~~~g~~vIvi-DHH 144 (539)
T TIGR00644 121 GISAHEE---IDYAKELGIDVIVT-DHH 144 (539)
T ss_pred CcccHHH---HHHHHhcCCCEEEE-CCC
Confidence 5555543 35578888887654 543
No 383
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=69.93 E-value=31 Score=31.29 Aligned_cols=81 Identities=12% Similarity=0.087 Sum_probs=56.7
Q ss_pred eEEEEeccchHHHHHHHHHHHHhc--CCeeeecCCccccccccCCCCCCcEEEEEeCCCC-cHH---HHHHHHHHHHcCC
Q 019775 56 TIFFTGVGKSGFVANKISQTLISL--GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGN-TEE---LLKVVPCAKAKGA 129 (336)
Q Consensus 56 ~I~i~G~G~s~~~a~~~~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~-~~~---~~~~~~~ak~~g~ 129 (336)
...+++..++..+|+.++.+|..- .....-+++++........+...|++|+-|.+.. +.. ++-++..+|+.|+
T Consensus 5 ~~~i~~~~~~~~la~~ia~~lg~~l~~~~~~~FpdGE~~v~i~~~vrg~dV~iv~s~~~~~nd~lmelll~~~alr~~~a 84 (320)
T PRK02269 5 DLKLFALSSNKELAEKVAQEIGIELGKSSVRQFSDGEIQVNIEESIRGHHVFILQSTSSPVNDNLMEILIMVDALKRASA 84 (320)
T ss_pred CeEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEECCCCCCCEEEEEecCCCCccchHHHHHHHHHHHHHhCC
Confidence 566777777889999999988632 3444456677766666666777889898887654 334 4445678888998
Q ss_pred e-EEEEeC
Q 019775 130 Y-LVSVTS 136 (336)
Q Consensus 130 ~-vi~IT~ 136 (336)
+ +.+|..
T Consensus 85 ~~i~~V~P 92 (320)
T PRK02269 85 ESINVVMP 92 (320)
T ss_pred CeEEEEEe
Confidence 6 556654
No 384
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=69.24 E-value=17 Score=26.92 Aligned_cols=83 Identities=12% Similarity=0.111 Sum_probs=47.8
Q ss_pred EEEEeccch-HHHHHHHHHHHHhcCCeeeecC-CccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEE
Q 019775 57 IFFTGVGKS-GFVANKISQTLISLGIKSGFLN-PLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSV 134 (336)
Q Consensus 57 I~i~G~G~s-~~~a~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~I 134 (336)
..+.|.|.| ..+++.+...+...|.++.... +......... ...-|++++-.+-++ ..-++-+.+.+.|.++..|
T Consensus 5 LlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~-~~~~DvIll~PQi~~--~~~~i~~~~~~~~ipv~~I 81 (104)
T PRK09590 5 LIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAITATEGEKAIA-AAEYDLYLVSPQTKM--YFKQFEEAGAKVGKPVVQI 81 (104)
T ss_pred EEECCCchHHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhhc-cCCCCEEEEChHHHH--HHHHHHHHhhhcCCCEEEe
Confidence 366777754 4888888888888899876543 2322222111 122365554322222 2223334556689999999
Q ss_pred eCCCCCcc
Q 019775 135 TSVEGNAL 142 (336)
Q Consensus 135 T~~~~s~l 142 (336)
....-.|+
T Consensus 82 ~~~~Y~~~ 89 (104)
T PRK09590 82 PPQAYIPI 89 (104)
T ss_pred CHHHcCCC
Confidence 88766654
No 385
>PRK05723 flavodoxin; Provisional
Probab=69.06 E-value=14 Score=29.34 Aligned_cols=69 Identities=16% Similarity=0.287 Sum_probs=43.6
Q ss_pred EEEEec--cchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCc---HHHHHHHHHHHHc
Q 019775 57 IFFTGV--GKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNT---EELLKVVPCAKAK 127 (336)
Q Consensus 57 I~i~G~--G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~---~~~~~~~~~ak~~ 127 (336)
..+||+ |.+..+|+.++..|...|..+........ . .+.....+.++|+.|..|.- .+.....+.+++.
T Consensus 4 ~I~ygS~tG~ae~~A~~la~~l~~~g~~~~~~~~~~~-~-~~~~~~~~~li~~~sT~G~Ge~Pd~~~~f~~~L~~~ 77 (151)
T PRK05723 4 AILSGSVYGTAEEVARHAESLLKAAGFEAWHNPRASL-Q-DLQAFAPEALLAVTSTTGMGELPDNLMPLYSAIRDQ 77 (151)
T ss_pred EEEEEcCchHHHHHHHHHHHHHHHCCCceeecCcCCH-h-HHHhCCCCeEEEEECCCCCCCCchhHHHHHHHHHhc
Confidence 345676 77889999999999999988866443111 1 11223456678888887765 3344445555543
No 386
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=68.57 E-value=13 Score=35.10 Aligned_cols=72 Identities=19% Similarity=0.146 Sum_probs=41.4
Q ss_pred CeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccc-------cc----cccCC-CCCCcEEEEEeCCCCcHHHHHHHH
Q 019775 55 GTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDA-------LH----GDIGI-LSSDDILVMFSKSGNTEELLKVVP 122 (336)
Q Consensus 55 ~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~-------~~----~~~~~-~~~~dlvi~iS~sG~~~~~~~~~~ 122 (336)
++|.|+|.|.+... ++..|.+.|..+........ .. ..... ..+-|++|+. +|.. .....++
T Consensus 4 ~~i~iiGlG~~G~s---lA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s--~gi~-~~~~~l~ 77 (418)
T PRK00683 4 QRVVVLGLGVTGKS---IARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRS--PGIK-KEHPWVQ 77 (418)
T ss_pred CeEEEEEECHHHHH---HHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEEC--CCCC-CCcHHHH
Confidence 48999999998753 56667788887765542111 00 00001 1223555544 3444 3366677
Q ss_pred HHHHcCCeEE
Q 019775 123 CAKAKGAYLV 132 (336)
Q Consensus 123 ~ak~~g~~vi 132 (336)
.|+++|++++
T Consensus 78 ~A~~~g~~vv 87 (418)
T PRK00683 78 AAIASHIPVV 87 (418)
T ss_pred HHHHCCCcEE
Confidence 7788887743
No 387
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=68.14 E-value=12 Score=29.45 Aligned_cols=37 Identities=16% Similarity=0.121 Sum_probs=29.6
Q ss_pred HcCCCeEEEEec-cchHHHHHHHHHHHHhcCCeeeecCC
Q 019775 51 LKCRGTIFFTGV-GKSGFVANKISQTLISLGIKSGFLNP 88 (336)
Q Consensus 51 ~~a~~~I~i~G~-G~s~~~a~~~~~~l~~~g~~~~~~~~ 88 (336)
.++ ++|.++|+ |.+.+.|+-|+|..+..+.+.+++++
T Consensus 17 ~~~-~kIvf~Gs~GvCtPFaeL~~Y~iR~~~~~~~FiP~ 54 (147)
T PF09897_consen 17 KDG-EKIVFIGSPGVCTPFAELFAYAIRDKVKEQYFIPD 54 (147)
T ss_dssp TT--SEEEEEE-TTTTHHHHHHHHHHTTTS--EEEEEET
T ss_pred cCC-CeEEEeCCCcccccHHHHHHHHHhhhccceeecCC
Confidence 677 59999999 88999999999999999888888774
No 388
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=68.12 E-value=7.3 Score=34.48 Aligned_cols=65 Identities=18% Similarity=0.318 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEE
Q 019775 68 VANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVS 133 (336)
Q Consensus 68 ~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~ 133 (336)
+.+.+ ..|..+|++.+.+.+.........-....|..-+=+.-|...+..++++.|+++|++||+
T Consensus 6 i~~kL-dyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~Vil 70 (316)
T PF00128_consen 6 IIDKL-DYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVIL 70 (316)
T ss_dssp HHHTH-HHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhh-HHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEE
Confidence 33444 478889999999987665332122234556666667789899999999999999999883
No 389
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=68.11 E-value=27 Score=28.23 Aligned_cols=68 Identities=21% Similarity=0.154 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCeeeecCCcccccccc-CCCCCCcEEEEEeCCCCcHH--HHHHHHHHHHcCCeEEEEeCC
Q 019775 70 NKISQTLISLGIKSGFLNPLDALHGDI-GILSSDDILVMFSKSGNTEE--LLKVVPCAKAKGAYLVSVTSV 137 (336)
Q Consensus 70 ~~~~~~l~~~g~~~~~~~~~~~~~~~~-~~~~~~dlvi~iS~sG~~~~--~~~~~~~ak~~g~~vi~IT~~ 137 (336)
..+.......|..++++-|+....... .....+.+-|+||..|.+.+ +.+.+...+..+-.+.++|+-
T Consensus 33 ~~L~~y~~~~~~~v~VVFDa~~~~~~~~~~~~~~gi~Vvft~~~~tAD~~Ie~~v~~~~~~~~~v~VVTSD 103 (166)
T PF05991_consen 33 EMLSEYAQFSGYEVIVVFDAYKVPGGSEEREEYGGIEVVFTKEGETADDYIERLVRELKNRPRQVTVVTSD 103 (166)
T ss_pred HHHHHHhcccCCEEEEEEeCCcCCCCCceeeeeCceEEEECCCCCCHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 333333344578888776654433322 22344789999999999966 667778887778899999973
No 390
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=68.06 E-value=19 Score=29.93 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=22.9
Q ss_pred EEEEeCCCCc--HHHHHHHHHHHHcCCeEEEEeCCC
Q 019775 105 LVMFSKSGNT--EELLKVVPCAKAKGAYLVSVTSVE 138 (336)
Q Consensus 105 vi~iS~sG~~--~~~~~~~~~ak~~g~~vi~IT~~~ 138 (336)
++++--.+.- ..+..+++.++..|+++|.+-+..
T Consensus 96 vliVDEasmv~~~~~~~ll~~~~~~~~klilvGD~~ 131 (196)
T PF13604_consen 96 VLIVDEASMVDSRQLARLLRLAKKSGAKLILVGDPN 131 (196)
T ss_dssp EEEESSGGG-BHHHHHHHHHHS-T-T-EEEEEE-TT
T ss_pred EEEEecccccCHHHHHHHHHHHHhcCCEEEEECCcc
Confidence 6777766653 567888899999999999999854
No 391
>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.
Probab=67.29 E-value=24 Score=36.25 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=39.9
Q ss_pred CCCCcEEEEEeCCC-CcH---------HHHHHHHHHHHcCCeEEEEeCCCCCccccc-cCEEEEcCCCcc
Q 019775 99 LSSDDILVMFSKSG-NTE---------ELLKVVPCAKAKGAYLVSVTSVEGNALAAV-CDMNVHLPVERE 157 (336)
Q Consensus 99 ~~~~dlvi~iS~sG-~~~---------~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~-ad~~i~~~~~~~ 157 (336)
+..-|++|++...- .+. .....++.+|++|+++|+|-.. .++.+.. +|..|.+..+++
T Consensus 165 ~~~a~~il~~G~Np~~t~~~~~~~~~~~~~~~~~~a~~~G~klIvIDPr-~t~tA~~aaD~~l~irPGTD 233 (770)
T TIGR00509 165 LENSKVLVLWGADPLKTSQIAWGIPDHGGYEYLERLKAKGKRVISIDPV-RTETAEFFGAEWIPPNPQTD 233 (770)
T ss_pred HhcCCEEEEeCCCHHHhCccccccCCcchHHHHHHHHHcCCEEEEEcCC-CCcchhhccCeEeCcCCCcH
Confidence 34567888875542 221 2346677889999999999876 5555665 589988876666
No 392
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=66.95 E-value=5.4 Score=29.91 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=36.2
Q ss_pred EEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCC--ccccccCEEEEcCCC
Q 019775 107 MFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGN--ALAAVCDMNVHLPVE 155 (336)
Q Consensus 107 ~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s--~l~~~ad~~i~~~~~ 155 (336)
++..+|.. .+++++.+|+.|.++|+|-++++. +-...||..+..+.+
T Consensus 6 LIanrGei--a~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~ 54 (110)
T PF00289_consen 6 LIANRGEI--AVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPPG 54 (110)
T ss_dssp EESS-HHH--HHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEESS
T ss_pred EEECCCHH--HHHHHHHHHHhCCcceeccCchhcccccccccccceecCcc
Confidence 34444444 889999999999999999998875 456779999988743
No 393
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=66.84 E-value=40 Score=25.40 Aligned_cols=80 Identities=20% Similarity=0.220 Sum_probs=47.9
Q ss_pred CeEEEEeccch-HHHHHHHHHHHHhcCCeeeecCCcc-cccc--ccCCC----CCCcEEEEEeCCCCcHHHHHHHHHHHH
Q 019775 55 GTIFFTGVGKS-GFVANKISQTLISLGIKSGFLNPLD-ALHG--DIGIL----SSDDILVMFSKSGNTEELLKVVPCAKA 126 (336)
Q Consensus 55 ~~I~i~G~G~s-~~~a~~~~~~l~~~g~~~~~~~~~~-~~~~--~~~~~----~~~dlvi~iS~sG~~~~~~~~~~~ak~ 126 (336)
|+|.++|.... ...+......|.+.|.+++.+++.. .+.. ....+ .+=|+++++.- ...+.+.++.+.+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~---~~~~~~~v~~~~~ 77 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVP---PDKVPEIVDEAAA 77 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S----HHHHHHHHHHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcC---HHHHHHHHHHHHH
Confidence 47889997654 4667888888888999999988532 2221 12223 34578777654 4556677788888
Q ss_pred cCCeEEEEeCC
Q 019775 127 KGAYLVSVTSV 137 (336)
Q Consensus 127 ~g~~vi~IT~~ 137 (336)
.|++-+.+...
T Consensus 78 ~g~~~v~~~~g 88 (116)
T PF13380_consen 78 LGVKAVWLQPG 88 (116)
T ss_dssp HT-SEEEE-TT
T ss_pred cCCCEEEEEcc
Confidence 89987766654
No 394
>PRK06703 flavodoxin; Provisional
Probab=66.77 E-value=43 Score=26.33 Aligned_cols=66 Identities=14% Similarity=0.020 Sum_probs=41.5
Q ss_pred EEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCC---CCcH-HHHHHHHHHH
Q 019775 57 IFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKS---GNTE-ELLKVVPCAK 125 (336)
Q Consensus 57 I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~s---G~~~-~~~~~~~~ak 125 (336)
+|....|++..+|+.++..+...|..+....-.+.- ...+.+.|++++.|.+ |..+ .+...++..+
T Consensus 7 iY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~---~~~l~~~d~viigspt~~~g~~p~~~~~f~~~l~ 76 (151)
T PRK06703 7 AYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMD---AEELLAYDGIILGSYTWGDGDLPYEAEDFHEDLE 76 (151)
T ss_pred EEECCCchHHHHHHHHHHHHHhcCCceEEEehhhCC---HHHHhcCCcEEEEECCCCCCcCcHHHHHHHHHHh
Confidence 444456889999999999999888887665422111 1124455666666642 3344 4666666655
No 395
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=66.70 E-value=36 Score=30.66 Aligned_cols=78 Identities=14% Similarity=0.103 Sum_probs=51.7
Q ss_pred EEeccchHHHHHHHHHHHHhc--CCeeeecCCccccccccCCCCCCcEEEEEeCCCC-cHHHH---HHHHHHHHcCCe-E
Q 019775 59 FTGVGKSGFVANKISQTLISL--GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGN-TEELL---KVVPCAKAKGAY-L 131 (336)
Q Consensus 59 i~G~G~s~~~a~~~~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~-~~~~~---~~~~~ak~~g~~-v 131 (336)
+++...+..+|..++..|..- .....-+++++........+..+|++|+-|.+.. +..+. -++..+|+.|++ +
T Consensus 3 i~~~~~~~~la~~ia~~lg~~~~~~~~~~FpdGE~~vri~~~v~g~~V~ii~s~~~~~nd~l~eLll~~~alr~~ga~~i 82 (309)
T PRK01259 3 LFAGNANPELAEKIAKYLGIPLGKASVGRFSDGEISVEINENVRGKDVFIIQSTCAPTNDNLMELLIMIDALKRASAGRI 82 (309)
T ss_pred EEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEeCCCCCCCEEEEECCCCCCCcHHHHHHHHHHHHHHHcCCceE
Confidence 566566778888888887632 3333446677766555566667888888887544 44444 456788899986 5
Q ss_pred EEEeC
Q 019775 132 VSVTS 136 (336)
Q Consensus 132 i~IT~ 136 (336)
.++..
T Consensus 83 ~lViP 87 (309)
T PRK01259 83 TAVIP 87 (309)
T ss_pred EEEee
Confidence 56654
No 396
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=66.61 E-value=53 Score=30.72 Aligned_cols=106 Identities=20% Similarity=0.240 Sum_probs=54.7
Q ss_pred HHHHHHHHcCCCeEEEEec--cchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCC----cHHH
Q 019775 44 LTFTQTLLKCRGTIFFTGV--GKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGN----TEEL 117 (336)
Q Consensus 44 ~~~~~~i~~a~~~I~i~G~--G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~----~~~~ 117 (336)
..+...+.+++++|..+|. |.+..+.+.+.. +.|....+++. +........++++..++.+=.+++ ..++
T Consensus 106 ~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~---~~gie~~~vd~-~~~~~~~~~i~~~t~~V~~ESPsNPll~v~DI 181 (409)
T KOG0053|consen 106 TVALLHLLPAGDHIVATGDVYGGTLRILRKFLP---KFGGEGDFVDV-DDLKKILKAIKENTKAVFLESPSNPLLKVPDI 181 (409)
T ss_pred HHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHH---HhCceeeeech-hhHHHHHHhhccCceEEEEECCCCCccccccH
Confidence 3333333344345544442 233333333333 55666655542 222223344566555555544443 3778
Q ss_pred HHHHHHHHHcCCeEEEEeCCCCCc----cccc-cCEEEEcCC
Q 019775 118 LKVVPCAKAKGAYLVSVTSVEGNA----LAAV-CDMNVHLPV 154 (336)
Q Consensus 118 ~~~~~~ak~~g~~vi~IT~~~~s~----l~~~-ad~~i~~~~ 154 (336)
.++.+.|+++|+.+|+ =+.-.+| ..++ ||++....+
T Consensus 182 ~~l~~la~~~g~~vvV-DnTf~~p~~~~pL~lGADIV~hSaT 222 (409)
T KOG0053|consen 182 EKLARLAHKYGFLVVV-DNTFGSPYNQDPLPLGADIVVHSAT 222 (409)
T ss_pred HHHHHHHhhCCCEEEE-eCCcCcccccChhhcCCCEEEEeee
Confidence 8999999999887763 2222222 2355 999976533
No 397
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=66.42 E-value=29 Score=23.87 Aligned_cols=58 Identities=17% Similarity=0.301 Sum_probs=39.0
Q ss_pred eEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHH-HHHHHHHcCCeEEE
Q 019775 56 TIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLK-VVPCAKAKGAYLVS 133 (336)
Q Consensus 56 ~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~-~~~~ak~~g~~vi~ 133 (336)
||.++|.|. ++.+++..|...|..+.++...+.+. .+..++..+ +.+.++++|+.+..
T Consensus 1 ~vvViGgG~---ig~E~A~~l~~~g~~vtli~~~~~~~-----------------~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 1 RVVVIGGGF---IGIELAEALAELGKEVTLIERSDRLL-----------------PGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEEESSSH---HHHHHHHHHHHTTSEEEEEESSSSSS-----------------TTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred CEEEECcCH---HHHHHHHHHHHhCcEEEEEeccchhh-----------------hhcCHHHHHHHHHHHHHCCCEEEe
Confidence 578999876 46677777888999998876544422 233445444 45788888877653
No 398
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=66.29 E-value=1.3e+02 Score=29.09 Aligned_cols=101 Identities=18% Similarity=0.158 Sum_probs=56.3
Q ss_pred hHHHHHHHHH----HcCCCeEEEEeccchH--HHHHHHHHHHHhcCCeeeecCCccccccc--c--CCCCCCcEEEEEeC
Q 019775 41 PHTLTFTQTL----LKCRGTIFFTGVGKSG--FVANKISQTLISLGIKSGFLNPLDALHGD--I--GILSSDDILVMFSK 110 (336)
Q Consensus 41 ~~i~~~~~~i----~~a~~~I~i~G~G~s~--~~a~~~~~~l~~~g~~~~~~~~~~~~~~~--~--~~~~~~dlvi~iS~ 110 (336)
+.++++++.+ .+. ++|.|+|=.-.- ..+-.+...|.++|.++....+...-..+ . ......+++|....
T Consensus 20 ~~~~~a~~~i~~ai~~~-~~I~I~~d~DaDGitS~ail~~~L~~~g~~~~~~ip~~~~~~~g~~~~~~~~~~~liItvD~ 98 (491)
T COG0608 20 KDMEKAAARIAEAIEKG-EKILIYGDYDADGITSAAILAKALRRLGADVDYYIPNRFEEGYGAIRKLKEEGADLIITVDN 98 (491)
T ss_pred hhHHHHHHHHHHHHHcC-CEEEEEEecCcccHHHHHHHHHHHHHcCCceEEEeCCCccccchHHHHHHhcCCCEEEEECC
Confidence 4455555555 456 699999986433 55566677788888887665433222211 1 12234467666655
Q ss_pred CCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccC
Q 019775 111 SGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCD 147 (336)
Q Consensus 111 sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad 147 (336)
.-...+ .++.++++|..|| ||+.. .+-...-+
T Consensus 99 G~~~~~---~i~~~~~~g~~vI-VtDHH-~~~~~~p~ 130 (491)
T COG0608 99 GSGSLE---EIARAKELGIDVI-VTDHH-PPGEELPD 130 (491)
T ss_pred CcccHH---HHHHHHhCCCcEE-EECCC-CCCCCCCC
Confidence 444433 4455566677765 56665 33333333
No 399
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=65.95 E-value=45 Score=24.92 Aligned_cols=70 Identities=16% Similarity=0.044 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCCeeeecCCcc---ccccccCCCCCCcEEEEEeC--CCCcHHHHHHHHHHHHcCC--eEEEEeCCCCC
Q 019775 69 ANKISQTLISLGIKSGFLNPLD---ALHGDIGILSSDDILVMFSK--SGNTEELLKVVPCAKAKGA--YLVSVTSVEGN 140 (336)
Q Consensus 69 a~~~~~~l~~~g~~~~~~~~~~---~~~~~~~~~~~~dlvi~iS~--sG~~~~~~~~~~~ak~~g~--~vi~IT~~~~s 140 (336)
...++..|...|..++.+.... .+.......+++ ++++|. ........++++.+|+.+. ..|.+.+...+
T Consensus 16 ~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pd--vV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~ 92 (119)
T cd02067 16 KNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDAD--AIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVT 92 (119)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCC--EEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCC
Confidence 4566666777899998765322 222222223333 444444 4445667888899999876 45677766544
No 400
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=65.80 E-value=29 Score=33.04 Aligned_cols=90 Identities=12% Similarity=0.027 Sum_probs=61.0
Q ss_pred ChhHHHHHHHHHHcCCCeEEEEeccchHHH-HHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHH
Q 019775 39 SLPHTLTFTQTLLKCRGTIFFTGVGKSGFV-ANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEEL 117 (336)
Q Consensus 39 ~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~-a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~ 117 (336)
+.++++++++++.+||+...++|.|..+.. ...+.......|.+...-+-+..+. +-.++-.
T Consensus 203 ~~s~i~~av~llk~AKrPLlvvGkgAa~~~ae~~l~~~Ve~~glPflptpMgKGll-----------------~d~hPl~ 265 (571)
T KOG1185|consen 203 PPSQIQKAVQLLKSAKRPLLVVGKGAAYAPAEDQLRKFVETTGLPFLPTPMGKGLL-----------------PDNHPLN 265 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEecccccCccHHHHHHHHHhcCCCcccCcccccCC-----------------CCCCchh
Confidence 468999999999999989999999998854 4555555556688775544332211 2234555
Q ss_pred HHHHHHHHHcCCeEEEEeCCCCCccccc
Q 019775 118 LKVVPCAKAKGAYLVSVTSVEGNALAAV 145 (336)
Q Consensus 118 ~~~~~~ak~~g~~vi~IT~~~~s~l~~~ 145 (336)
+..++.+--+.|.++++-+..-+.+..+
T Consensus 266 v~~aRS~ALk~ADvvll~GarlnwiLhf 293 (571)
T KOG1185|consen 266 VSSARSLALKKADVVLLAGARLNWILHF 293 (571)
T ss_pred hhHHHHHHHhhCCEEEEecceeeEEEec
Confidence 6666776677788887777655544433
No 401
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=65.73 E-value=12 Score=30.23 Aligned_cols=45 Identities=13% Similarity=0.268 Sum_probs=36.9
Q ss_pred EEEEeCCCCc---HHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEE
Q 019775 105 LVMFSKSGNT---EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMN 149 (336)
Q Consensus 105 vi~iS~sG~~---~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~ 149 (336)
+-+|...|+. -.+.++++.|.+.|...|.|+.+...|+++.-||-
T Consensus 21 vrlIg~~GeqlGiv~~~eAL~lA~e~~LDLV~Ispna~PPVcKImDYG 68 (176)
T COG0290 21 VRLIGEDGEQLGIVSIEEALKLAEEAGLDLVEISPNAKPPVCKIMDYG 68 (176)
T ss_pred EEEECCCCcEEcceeHHHHHHHHHHcCCCEEEECCCCCCCeeEeeecc
Confidence 4556666765 35778999999999999999999999998877763
No 402
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=65.69 E-value=48 Score=30.90 Aligned_cols=81 Identities=12% Similarity=0.151 Sum_probs=55.3
Q ss_pred CeEEEEeccchHHHHHHHHHHHH-----------------------hc-CCeeeecCCccccccccCCCCCCcEEEEEeC
Q 019775 55 GTIFFTGVGKSGFVANKISQTLI-----------------------SL-GIKSGFLNPLDALHGDIGILSSDDILVMFSK 110 (336)
Q Consensus 55 ~~I~i~G~G~s~~~a~~~~~~l~-----------------------~~-g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~ 110 (336)
++..+++...+..+|+..+..|. .+ ...+.-+++++........+...|++|+-|.
T Consensus 7 ~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~FpDGE~~vri~~~Vrg~dV~ivqs~ 86 (382)
T PRK06827 7 GSLGIIALPSCRELADKVDEHLVRIRERKENENIESLAFKGYSRESYLIPAKFIRFSNGEAKGEILESVRGKDIYILQDV 86 (382)
T ss_pred CceEEEECCCCHHHHHHHHHHHHHhhhhccccccccccccccCCcceeeeeEEEECCCCCEEEEECCCCCCCeEEEEecC
Confidence 36778887788899999999991 11 2233445677766666667777899999997
Q ss_pred CC---------------CcHHHHH---HHHHHHHcCCe-EEEEeC
Q 019775 111 SG---------------NTEELLK---VVPCAKAKGAY-LVSVTS 136 (336)
Q Consensus 111 sG---------------~~~~~~~---~~~~ak~~g~~-vi~IT~ 136 (336)
++ -+..+.+ ++..+| .|++ +.+|..
T Consensus 87 ~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA~rIt~ViP 130 (382)
T PRK06827 87 GNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKARRITVIMP 130 (382)
T ss_pred CcccccccccccccCCCCcHHHHHHHHHHHHHh-cCCCeEEEEee
Confidence 64 2444555 567888 8885 555554
No 403
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=65.64 E-value=66 Score=27.06 Aligned_cols=67 Identities=22% Similarity=0.267 Sum_probs=45.3
Q ss_pred HHHHHHHHHHH-hcCCeeeecCCccccccccCCCCCCcEEEEEeCCCC--cHHHHHHHHHHHHcCCeEEEEe
Q 019775 67 FVANKISQTLI-SLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGN--TEELLKVVPCAKAKGAYLVSVT 135 (336)
Q Consensus 67 ~~a~~~~~~l~-~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~--~~~~~~~~~~ak~~g~~vi~IT 135 (336)
.....+...|. ..|+.+....+...+.. ..++.=|++|+.+..|. +.+-.++++..=++|..+|++=
T Consensus 19 ~~~~~l~~ll~~~~~~~v~~~~~~~~~~~--~~L~~~Dvvv~~~~~~~~l~~~~~~al~~~v~~Ggglv~lH 88 (217)
T PF06283_consen 19 AAKKALAQLLEESEGFEVTVTEDPDDLTP--ENLKGYDVVVFYNTGGDELTDEQRAALRDYVENGGGLVGLH 88 (217)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCSGGCTSH--HCHCT-SEEEEE-SSCCGS-HHHHHHHHHHHHTT-EEEEEG
T ss_pred HHHHHHHHHhccCCCEEEEEEeCcccCCh--hHhcCCCEEEEECCCCCcCCHHHHHHHHHHHHcCCCEEEEc
Confidence 34455555555 46888887776444332 34778899999999884 7788888888888999999997
No 404
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=65.62 E-value=42 Score=26.40 Aligned_cols=80 Identities=24% Similarity=0.195 Sum_probs=40.7
Q ss_pred ChhHHHHHHHHHHc--CCCeEEEEeccch---HHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCC
Q 019775 39 SLPHTLTFTQTLLK--CRGTIFFTGVGKS---GFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGN 113 (336)
Q Consensus 39 ~~~~i~~~~~~i~~--a~~~I~i~G~G~s---~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~ 113 (336)
....+++++++..+ + .+|++.|.... ..-|+.+...+...|++ .+.+++-..+.+
T Consensus 22 ~~~R~~~a~~L~~~g~~-~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp-------------------~~~I~~e~~s~~ 81 (155)
T PF02698_consen 22 SRERLDEAARLYKAGYA-PRILFSGGYGHGDGRSEAEAMRDYLIELGVP-------------------EERIILEPKSTN 81 (155)
T ss_dssp -HHHHHHHHHHHH-HHT---EEEE--SSTTHTS-HHHHHHHHHHHT----------------------GGGEEEE----S
T ss_pred HHHHHHHHHHHHhcCCC-CeEEECCCCCCCCCCCHHHHHHHHHHhcccc-------------------hheeEccCCCCC
Confidence 44677777777763 4 58888885443 36777888888777755 222333444555
Q ss_pred c-HHHHHHHHHHHHcCC-eEEEEeCCC
Q 019775 114 T-EELLKVVPCAKAKGA-YLVSVTSVE 138 (336)
Q Consensus 114 ~-~~~~~~~~~ak~~g~-~vi~IT~~~ 138 (336)
| .+...+.+.++++|. ++++||+..
T Consensus 82 T~ena~~~~~~~~~~~~~~iilVT~~~ 108 (155)
T PF02698_consen 82 TYENARFSKRLLKERGWQSIILVTSPY 108 (155)
T ss_dssp HHHHHHHHHHHHHT-SSS-EEEE--CC
T ss_pred HHHHHHHHHHHHHhhcCCeEEEECCHH
Confidence 5 556666777787776 677777653
No 405
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=65.50 E-value=66 Score=26.01 Aligned_cols=79 Identities=14% Similarity=0.144 Sum_probs=53.6
Q ss_pred CeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEE
Q 019775 55 GTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSV 134 (336)
Q Consensus 55 ~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~I 134 (336)
+-+++.|.|....-+..+++.|...|.++.++ ++--....+++.....+.+++.|.+++..
T Consensus 27 ~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~-------------------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 87 (169)
T PF03853_consen 27 RVLILCGPGNNGGDGLVAARHLANRGYNVTVY-------------------LVGPPEKLSEDAKQQLEILKKMGIKIIEL 87 (169)
T ss_dssp EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEE-------------------EEESSSSTSHHHHHHHHHHHHTT-EEESS
T ss_pred eEEEEECCCCChHHHHHHHHHHHHCCCeEEEE-------------------EEeccccCCHHHHHHHHHHHhcCCcEeec
Confidence 46778889999999999999999999998762 11112345677888899999999888765
Q ss_pred eCCCCC-ccccccCEEEEc
Q 019775 135 TSVEGN-ALAAVCDMNVHL 152 (336)
Q Consensus 135 T~~~~s-~l~~~ad~~i~~ 152 (336)
...... +...-+|++|-.
T Consensus 88 ~~~~~~~~~~~~~dlIIDa 106 (169)
T PF03853_consen 88 DSDEDLSEALEPADLIIDA 106 (169)
T ss_dssp CCGSGGGHHGSCESEEEEE
T ss_pred cccchhhcccccccEEEEe
Confidence 443221 112246777654
No 406
>PRK06756 flavodoxin; Provisional
Probab=65.37 E-value=37 Score=26.56 Aligned_cols=67 Identities=16% Similarity=0.254 Sum_probs=42.9
Q ss_pred EEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCC---CCcH-HHHHHHHHHH
Q 019775 57 IFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKS---GNTE-ELLKVVPCAK 125 (336)
Q Consensus 57 I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~s---G~~~-~~~~~~~~ak 125 (336)
||.-..|.+..+|+.++..+...|..+...+-.+.- ....+.+-|.+++.|.+ |..+ .+.+.++..+
T Consensus 7 iY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~--~~~~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~ 77 (148)
T PRK06756 7 IFASMSGNTEEMADHIAGVIRETENEIEVIDIMDSP--EASILEQYDGIILGAYTWGDGDLPDDFLDFYDAMD 77 (148)
T ss_pred EEECCCchHHHHHHHHHHHHhhcCCeEEEeehhccC--CHHHHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHh
Confidence 455567889999999999999889887665422110 01234456777777644 3444 4777766654
No 407
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=65.11 E-value=22 Score=34.93 Aligned_cols=72 Identities=19% Similarity=0.229 Sum_probs=48.9
Q ss_pred eccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEE
Q 019775 61 GVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVS 133 (336)
Q Consensus 61 G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~ 133 (336)
|.|.=..+...+ ..|..+|++.+.+.+.......-......|..=+=..-|...+..++++.|+++|++||+
T Consensus 22 ~~G~~~gi~~~l-~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vil 93 (543)
T TIGR02403 22 GTGDLRGIIEKL-DYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIML 93 (543)
T ss_pred CccCHHHHHHhH-HHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 345555666665 678899999999887554322111223344433344558889999999999999999883
No 408
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=64.81 E-value=44 Score=29.91 Aligned_cols=51 Identities=12% Similarity=0.010 Sum_probs=40.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCC
Q 019775 104 ILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPV 154 (336)
Q Consensus 104 lvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~ 154 (336)
.-+++.-|+...+=..+++.+++.|+.+..|+++..+-+-+.+|.++.-..
T Consensus 146 ~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Dsa~~~~~~~vd~VivGad 196 (301)
T COG1184 146 FKVIVTESRPRGEGRIMAKELRQSGIPVTVIVDSAVGAFMSRVDKVLVGAD 196 (301)
T ss_pred eEEEEEcCCCcchHHHHHHHHHHcCCceEEEechHHHHHHHhCCEEEECcc
Confidence 344455555555678889999999999999999999999999999987533
No 409
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=64.51 E-value=1.1e+02 Score=28.22 Aligned_cols=115 Identities=13% Similarity=0.110 Sum_probs=66.0
Q ss_pred hcCChhHHHHHHHHHHcCCCeEEEEeccchHH--------HHHHHHHHHHhcCCeeee---------------cCC----
Q 019775 36 QHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGF--------VANKISQTLISLGIKSGF---------------LNP---- 88 (336)
Q Consensus 36 ~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~--------~a~~~~~~l~~~g~~~~~---------------~~~---- 88 (336)
..+..+.+.++++++.+|+--+.++|.|.++. .+..+-..|+..-+-... ...
T Consensus 228 ~gvp~~~i~e~a~~mKna~Fg~if~GlGlt~S~gk~rN~e~a~~Lv~~LNe~ak~tli~mrgH~Nv~GFnqv~~~e~GYp 307 (429)
T COG1029 228 AGVPIEEIEELADMMKNAKFGAIFVGLGLTSSRGKHRNVENAINLVKDLNEYAKFTLIPMRGHYNVTGFNEVLSWETGYP 307 (429)
T ss_pred cCCCHHHHHHHHHHHhcCCcceEEEeeceeecccccccHHHHHHHHHHHhhhceEEEEEeccccccccccchhhhhhCCc
Confidence 34557899999999999976688899997665 566666666664222211 000
Q ss_pred --ccccccc-------------cCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcC
Q 019775 89 --LDALHGD-------------IGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLP 153 (336)
Q Consensus 89 --~~~~~~~-------------~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~ 153 (336)
.++...+ +..-+-|..+|+-|-.|.+ --.++++.+. .+++|.|-.. .+|-+..||++|...
T Consensus 308 f~vdF~rG~prynPgE~s~vdlL~~k~vDAalvi~sDp~ah-~P~~~~~~l~--eIPvI~iDp~-~~pTt~vadVviP~a 383 (429)
T COG1029 308 FAVDFSRGYPRYNPGEFSAVDLLKRKEVDAALVIASDPGAH-FPRDAVEHLA--EIPVICIDPH-PTPTTEVADVVIPSA 383 (429)
T ss_pred eeeecccCCcCCCcccccHHHHHhccCCCeEEEEecCcccc-ChHHHHHHhh--cCCEEEecCC-CCcchhhcceecccc
Confidence 0000000 0011223344444555544 3344444444 4788888764 667788899987654
Q ss_pred C
Q 019775 154 V 154 (336)
Q Consensus 154 ~ 154 (336)
.
T Consensus 384 I 384 (429)
T COG1029 384 I 384 (429)
T ss_pred e
Confidence 3
No 410
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=64.32 E-value=6.5 Score=28.87 Aligned_cols=36 Identities=8% Similarity=0.091 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEE
Q 019775 114 TEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMN 149 (336)
Q Consensus 114 ~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~ 149 (336)
-+...++++.++++|.+++.+||+...+-..+++..
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence 366789999999999999999999877766665433
No 411
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=64.22 E-value=1.2e+02 Score=29.61 Aligned_cols=59 Identities=14% Similarity=0.110 Sum_probs=38.1
Q ss_pred CCCCCcEEEEEeCCCCcH-----HHHHHHHHHHHcC-----CeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775 98 ILSSDDILVMFSKSGNTE-----ELLKVVPCAKAKG-----AYLVSVTSVEGNALAAVCDMNVHLPVERE 157 (336)
Q Consensus 98 ~~~~~dlvi~iS~sG~~~-----~~~~~~~~ak~~g-----~~vi~IT~~~~s~l~~~ad~~i~~~~~~~ 157 (336)
.+..-|++|++....... ........++++| +++|+|-. ..+..+..||..+.+..+.+
T Consensus 193 D~~~a~~il~~G~N~~~~~~~~~~~~~~~~~ar~~g~~~~g~kliviDP-r~s~ta~~Ad~~l~irPGtD 261 (524)
T cd02764 193 DFDKAEVIVSIDADFLGSWISAIRHRHDFAAKRRLGAEEPMSRLVAAES-VYTLTGANADVRLAIRPSQE 261 (524)
T ss_pred ChhHCcEEEEECCcccccCcccchhHHHHHHhccccCCCCceeEEEEec-CCCchhhhhcceeccCcccH
Confidence 345668888886543221 1234444566655 49999975 46677788999998866655
No 412
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=63.91 E-value=59 Score=24.81 Aligned_cols=67 Identities=18% Similarity=0.184 Sum_probs=42.9
Q ss_pred EEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCC---CCc--HHHHHHHHHHHH
Q 019775 57 IFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKS---GNT--EELLKVVPCAKA 126 (336)
Q Consensus 57 I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~s---G~~--~~~~~~~~~ak~ 126 (336)
+|.-.+|.+..+|+.++..+...|..+...+-.+.. ...+.+-|.+|+.|-. |.. ..+...++..+.
T Consensus 4 iy~S~tGnT~~~A~~i~~~~~~~g~~v~~~~~~~~~---~~~l~~~d~iilgspty~~g~~p~~~~~~f~~~l~~ 75 (140)
T TIGR01753 4 VYASMTGNTEEMANIIAEGLKEAGAEVDLLEVADAD---AEDLLSYDAVLLGCSTWGDEDLEQDDFEPFFEELED 75 (140)
T ss_pred EEECCCcHHHHHHHHHHHHHHhcCCeEEEEEcccCC---HHHHhcCCEEEEEcCCCCCCCCCcchHHHHHHHhhh
Confidence 444556889999999999999988888766422211 1123456777777643 444 356666666554
No 413
>PF04084 ORC2: Origin recognition complex subunit 2 ; InterPro: IPR007220 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. This entry represents subunit 2, which binds the origin of replication. It plays a role in chromosome replication and mating type transcriptional silencing.; GO: 0006260 DNA replication, 0000808 origin recognition complex, 0005634 nucleus
Probab=63.89 E-value=22 Score=32.28 Aligned_cols=78 Identities=15% Similarity=0.068 Sum_probs=49.2
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcC--CeeeecCC
Q 019775 11 LPHKVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLG--IKSGFLNP 88 (336)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g--~~~~~~~~ 88 (336)
+++++..+.++.+.+...+.-.+.........+.+-.-.+..- =.|.+||.|+=+.+.+.|+.++..-. .++..+++
T Consensus 12 l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~F~qW~~eL~~G-FnlL~YG~GSKr~lL~~Fa~~~l~~~~~~~~vvvnG 90 (326)
T PF04084_consen 12 LDHEEYFSLLQELSDDSHQKEKEALFELHRKLFPQWMFELSQG-FNLLFYGYGSKRKLLNDFAEKYLSDWGDGPVVVVNG 90 (326)
T ss_pred CCHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEecChHHHHHHHHHHHHhhccCCCcEEEEEc
Confidence 4444555555544222222222222233346677777777777 59999999999999999999988774 55666554
Q ss_pred c
Q 019775 89 L 89 (336)
Q Consensus 89 ~ 89 (336)
+
T Consensus 91 y 91 (326)
T PF04084_consen 91 Y 91 (326)
T ss_pred c
Confidence 3
No 414
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=63.83 E-value=28 Score=25.48 Aligned_cols=78 Identities=21% Similarity=0.225 Sum_probs=48.7
Q ss_pred CeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccc----cc-----cccCCCCCCcEEEEEeCCCCcHHHHHHHHHHH
Q 019775 55 GTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDA----LH-----GDIGILSSDDILVMFSKSGNTEELLKVVPCAK 125 (336)
Q Consensus 55 ~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~----~~-----~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak 125 (336)
++|.++|.|.. |..-...|.+.|-++..+.+... .. .+...+ ++..+++...+....-..+.+.|+
T Consensus 8 ~~vlVvGgG~v---a~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~~~l--~~~~lV~~at~d~~~n~~i~~~a~ 82 (103)
T PF13241_consen 8 KRVLVVGGGPV---AARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFEEDL--DGADLVFAATDDPELNEAIYADAR 82 (103)
T ss_dssp -EEEEEEESHH---HHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-GGGC--TTESEEEE-SS-HHHHHHHHHHHH
T ss_pred CEEEEECCCHH---HHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHHHHH--hhheEEEecCCCHHHHHHHHHHHh
Confidence 59999998764 44556777888988888765421 00 001122 234566677777666677788999
Q ss_pred HcCCeEEEEeCC
Q 019775 126 AKGAYLVSVTSV 137 (336)
Q Consensus 126 ~~g~~vi~IT~~ 137 (336)
++|+.+-.....
T Consensus 83 ~~~i~vn~~D~p 94 (103)
T PF13241_consen 83 ARGILVNVVDDP 94 (103)
T ss_dssp HTTSEEEETT-C
T ss_pred hCCEEEEECCCc
Confidence 999988776654
No 415
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=63.72 E-value=14 Score=29.88 Aligned_cols=55 Identities=18% Similarity=0.211 Sum_probs=44.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCcccccc---CEEEEcCCCcc
Q 019775 103 DILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVC---DMNVHLPVERE 157 (336)
Q Consensus 103 dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~a---d~~i~~~~~~~ 157 (336)
..+|....+--++++.+-+..+|+.|++++.++|+..+-++..+ |+.+...+..+
T Consensus 37 NTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~A~KP 94 (175)
T COG2179 37 NTLVPWDNPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFIYRAKKP 94 (175)
T ss_pred CceecccCCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCceeecccCc
Confidence 34556666777999999999999999999999999888876554 47777777655
No 416
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=63.46 E-value=61 Score=25.25 Aligned_cols=76 Identities=18% Similarity=0.180 Sum_probs=49.2
Q ss_pred EEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeC---CCCcHHHHHHHHHHH--HcCCeE
Q 019775 57 IFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSK---SGNTEELLKVVPCAK--AKGAYL 131 (336)
Q Consensus 57 I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~---sG~~~~~~~~~~~ak--~~g~~v 131 (336)
||..+.|++.-+|+.++..|...+..+.+.+ . ......+.+-|.+|+-|- .+-...+.+.++..+ -++-++
T Consensus 3 vY~S~~G~Tk~~A~~ia~~l~~~~~~v~~~~-~---~~~~~~~~~yD~vi~gspiy~g~~~~~~~~fi~~~~~~l~~k~v 78 (143)
T PF12724_consen 3 VYFSKTGNTKKIAEWIAEKLGEEGELVDLEK-V---EEDEPDLSDYDAVIFGSPIYAGRIPGEMREFIKKNKDNLKNKKV 78 (143)
T ss_pred EEECCCchHHHHHHHHHHHHhhhccEEEHHh-h---hhcccccccCCEEEEEEEEECCcCCHHHHHHHHHHHHHHcCCcE
Confidence 6778889999999999999997755554333 1 112335667788777764 334555677776543 345566
Q ss_pred EEEeC
Q 019775 132 VSVTS 136 (336)
Q Consensus 132 i~IT~ 136 (336)
+.++.
T Consensus 79 ~~f~~ 83 (143)
T PF12724_consen 79 ALFSV 83 (143)
T ss_pred EEEEE
Confidence 55554
No 417
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=63.23 E-value=37 Score=24.55 Aligned_cols=80 Identities=15% Similarity=0.202 Sum_probs=47.1
Q ss_pred EEEEeccchH-HHHHHHHHHHHhcCCeeeecC-CccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEE
Q 019775 57 IFFTGVGKSG-FVANKISQTLISLGIKSGFLN-PLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSV 134 (336)
Q Consensus 57 I~i~G~G~s~-~~a~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~I 134 (336)
+.+.|.|.|. .+++.+...+...|.++.+.. +...... ....-|++++-.+-.+ ..-++-+.+...++++..|
T Consensus 3 l~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~~~~---~~~~~Diil~~Pqv~~--~~~~i~~~~~~~~~pv~~I 77 (96)
T cd05564 3 LLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESELEE---YIDDADVVLLGPQVRY--MLDEVKKKAAEYGIPVAVI 77 (96)
T ss_pred EEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHHHHHH---hcCCCCEEEEChhHHH--HHHHHHHHhccCCCcEEEc
Confidence 4677888544 778888888888898875544 2222221 2345576555433333 2223333456688999988
Q ss_pred eCCCCCc
Q 019775 135 TSVEGNA 141 (336)
Q Consensus 135 T~~~~s~ 141 (336)
-...-++
T Consensus 78 ~~~~Y~~ 84 (96)
T cd05564 78 DMMDYGM 84 (96)
T ss_pred ChHhccc
Confidence 7655443
No 418
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=63.05 E-value=44 Score=30.09 Aligned_cols=78 Identities=15% Similarity=0.137 Sum_probs=51.4
Q ss_pred EEeccchHHHHHHHHHHHHhc--CCeeeecCCccccccccCCCCCCcEEEE-EeCCCC-cH---HHHHHHHHHHHcCCe-
Q 019775 59 FTGVGKSGFVANKISQTLISL--GIKSGFLNPLDALHGDIGILSSDDILVM-FSKSGN-TE---ELLKVVPCAKAKGAY- 130 (336)
Q Consensus 59 i~G~G~s~~~a~~~~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~dlvi~-iS~sG~-~~---~~~~~~~~ak~~g~~- 130 (336)
+++...+..+|..++..|.-. .....-+++++........+...|++|+ -|.+.. +. +++-++..+|+.|++
T Consensus 3 i~~~~~~~~la~~ia~~lg~~~~~~~~~~FpdGE~~v~i~~~v~g~~v~iv~~s~~~~~~~~l~el~~~~~a~r~~ga~~ 82 (308)
T TIGR01251 3 IFSGSSNQELAQKVAKNLGLPLGDVEVKRFPDGELYVRINESVRGKDVFIIQQSTSAPVNDNLMELLIMIDALKRASAKS 82 (308)
T ss_pred EEECCCCHHHHHHHHHHhCCeeeeeEEEECCCCCEEEEECCCCCCCeEEEEeCCCCCCccHHHHHHHHHHHHHHHcCCCe
Confidence 566667778899988888632 3344456677766555566666788888 565433 34 345556888999996
Q ss_pred EEEEeC
Q 019775 131 LVSVTS 136 (336)
Q Consensus 131 vi~IT~ 136 (336)
+.+|..
T Consensus 83 i~~v~P 88 (308)
T TIGR01251 83 ITAVIP 88 (308)
T ss_pred EEEEEE
Confidence 556654
No 419
>PRK06242 flavodoxin; Provisional
Probab=62.97 E-value=51 Score=25.73 Aligned_cols=73 Identities=16% Similarity=0.132 Sum_probs=41.7
Q ss_pred EEEEe-ccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeC---CCCcHHHHHHHHHHHH-cCCeE
Q 019775 57 IFFTG-VGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSK---SGNTEELLKVVPCAKA-KGAYL 131 (336)
Q Consensus 57 I~i~G-~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~---sG~~~~~~~~~~~ak~-~g~~v 131 (336)
||.-+ .|.+..+|+.++..+ +..++-+.+.. ...+.+-|.+|+-|- .+-.+.+.+.++.... +|-++
T Consensus 6 iY~S~~tGnT~~~A~~ia~~l---~~~~~~i~~~~-----~~~~~~~d~ii~g~pvy~~~~~~~~~~fl~~~~~~~~k~~ 77 (150)
T PRK06242 6 VYASVHHGNTEKIAKAIAEVL---DAEVIDPGDVN-----PEDLSEYDLIGFGSGIYFGKFHKSLLKLIEKLPPVSGKKA 77 (150)
T ss_pred EEeCCCCCCHHHHHHHHHHhc---CcEEecHHHCC-----cccHhHCCEEEEeCchhcCCcCHHHHHHHHhhhhhcCCeE
Confidence 44444 489999999999888 33333222111 123445676666652 3445667777766643 45555
Q ss_pred EEEeCC
Q 019775 132 VSVTSV 137 (336)
Q Consensus 132 i~IT~~ 137 (336)
++++..
T Consensus 78 ~~f~t~ 83 (150)
T PRK06242 78 FIFSTS 83 (150)
T ss_pred EEEECC
Confidence 555443
No 420
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=62.94 E-value=16 Score=31.48 Aligned_cols=56 Identities=9% Similarity=-0.001 Sum_probs=43.6
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccc--cccCEEEEcCCC
Q 019775 98 ILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALA--AVCDMNVHLPVE 155 (336)
Q Consensus 98 ~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~--~~ad~~i~~~~~ 155 (336)
.+.+-|++|++-.|+...-...+.+.++ +|+++|.|... .++.. ..+|++|.-+++
T Consensus 172 ~~~~aDlllvvGTSl~V~pa~~l~~~~~-~~~~~v~iN~~-~~~~~~~~~~d~~~~~~~~ 229 (235)
T cd01408 172 DKEEADLLIVIGTSLKVAPFASLPSRVP-SEVPRVLINRE-PVGHLGKRPFDVALLGDCD 229 (235)
T ss_pred HHhcCCEEEEECCCCeeccHHHHHHHHh-CCCcEEEEeCC-CCCCCCCCCcCEEEeCCHH
Confidence 3567799999999999888888888888 68998877654 45555 778988876554
No 421
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=62.92 E-value=32 Score=34.23 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=38.3
Q ss_pred CcEEEEEeCCCC-cH---------HHHHHHHHHHHcCCeEEEEeCCCCCcccc-ccCEEEEcCCCcc
Q 019775 102 DDILVMFSKSGN-TE---------ELLKVVPCAKAKGAYLVSVTSVEGNALAA-VCDMNVHLPVERE 157 (336)
Q Consensus 102 ~dlvi~iS~sG~-~~---------~~~~~~~~ak~~g~~vi~IT~~~~s~l~~-~ad~~i~~~~~~~ 157 (336)
-|++|++..... +. .....+..++++|+++|+|-.. .++.+. .||..+.+.-+++
T Consensus 170 ad~il~wG~N~~~~~~~~~~~~~~~~~~~~~~a~~~GakiivIDPr-~s~ta~~~AD~~l~irPGtD 235 (609)
T cd02751 170 SDLVVLFGANPLKTRQGGGGGPDHGSYYYLKQAKDAGVRFICIDPR-YTDTAAVLAAEWIPIRPGTD 235 (609)
T ss_pred CCEEEEECCCHHHhcCCCCCccCcchHHHHHHHHHCCCeEEEECCC-CCccccccCCEEECCCCCcH
Confidence 688888855422 21 1235667788999999999765 555555 7999998866655
No 422
>PRK05568 flavodoxin; Provisional
Probab=62.88 E-value=62 Score=24.97 Aligned_cols=78 Identities=26% Similarity=0.363 Sum_probs=45.6
Q ss_pred eEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCC-CC----cHHHHHHHHHHHH--cC
Q 019775 56 TIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKS-GN----TEELLKVVPCAKA--KG 128 (336)
Q Consensus 56 ~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~s-G~----~~~~~~~~~~ak~--~g 128 (336)
-+|..+.|.+..+|+.++..+...|..+...+-.+.- ...+.+-|.+++-|-. +. +..+...++..+. +|
T Consensus 6 IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~---~~~~~~~d~iilgsp~y~~~~~~~~~~~~f~~~~~~~~~~ 82 (142)
T PRK05568 6 IIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEAS---VDDVKGADVVALGSPAMGDEVLEEGEMEPFVESISSLVKG 82 (142)
T ss_pred EEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCC---HHHHHhCCEEEEECCccCcccccchhHHHHHHHhhhhhCC
Confidence 3666777899999999999999888877665422111 1134455555555432 22 1345566655532 34
Q ss_pred CeEEEEeC
Q 019775 129 AYLVSVTS 136 (336)
Q Consensus 129 ~~vi~IT~ 136 (336)
-++.+++.
T Consensus 83 k~~~~f~t 90 (142)
T PRK05568 83 KKLVLFGS 90 (142)
T ss_pred CEEEEEEc
Confidence 45555544
No 423
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=62.59 E-value=1.2e+02 Score=29.29 Aligned_cols=113 Identities=13% Similarity=0.051 Sum_probs=59.2
Q ss_pred cCChhHHHHHHHHHHcCCCeEEEEeccchH----HHHHHHHHHHHh----cCCeeeecCCccccccccCCCCCCcEEEEE
Q 019775 37 HLSLPHTLTFTQTLLKCRGTIFFTGVGKSG----FVANKISQTLIS----LGIKSGFLNPLDALHGDIGILSSDDILVMF 108 (336)
Q Consensus 37 ~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~----~~a~~~~~~l~~----~g~~~~~~~~~~~~~~~~~~~~~~dlvi~i 108 (336)
-++.++|+++++.+.++++.+.++|.|..+ ..+......|.. +|++=- .... .....+=++++++
T Consensus 263 gv~~~~I~~~A~~~a~~~~~~i~~g~g~~~~~~g~~~~~ai~~L~~ltG~~g~~G~-----g~~~--~~~~~~ik~l~~~ 335 (501)
T cd02766 263 GVSAEEIEELARLYGEAKPPSIRLGYGMQRYRNGGQNVRAIDALPALTGNIGVPGG-----GAFY--SNSGPPVKALWVY 335 (501)
T ss_pred CCCHHHHHHHHHHHHhCCCcEEEecchhhhccchHHHHHHHHHHHHHhCCCCCCCC-----cccC--CCCCCCeeEEEEe
Confidence 467788999999999875456677887653 111122222222 222210 0000 0000233455555
Q ss_pred eCCC--CcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775 109 SKSG--NTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE 157 (336)
Q Consensus 109 S~sG--~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~ 157 (336)
.... ..++..+..+.+.+ ....+++.+...++-+++||++|...+.-|
T Consensus 336 g~Np~~~~p~~~~~~~a~l~-~~~f~Vv~D~~~teTa~~ADvVLP~a~~~E 385 (501)
T cd02766 336 NSNPVAQAPDSNKVRKGLAR-EDLFVVVHDQFMTDTARYADIVLPATTFLE 385 (501)
T ss_pred CCCHHhhCCCHHHHHHHHhc-CCCeEEEEecCcCchHhhccEeecccCccc
Confidence 4322 12333333332332 355566666667888999999998876544
No 424
>PRK04148 hypothetical protein; Provisional
Probab=62.16 E-value=73 Score=24.80 Aligned_cols=84 Identities=14% Similarity=0.076 Sum_probs=52.0
Q ss_pred CeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccc---------cccCCC-CC-----CcEEEEEeCCCCcHHHHH
Q 019775 55 GTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALH---------GDIGIL-SS-----DDILVMFSKSGNTEELLK 119 (336)
Q Consensus 55 ~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~---------~~~~~~-~~-----~dlvi~iS~sG~~~~~~~ 119 (336)
.+|..+|+|+...+|..++ +.|..+..+.-..... .....+ ++ .+.=++.|.....+-.-.
T Consensus 18 ~kileIG~GfG~~vA~~L~----~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~ 93 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLK----ESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPF 93 (134)
T ss_pred CEEEEEEecCCHHHHHHHH----HCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHH
Confidence 5799999995556777665 5688887765211100 001111 11 123355666665555666
Q ss_pred HHHHHHHcCCeEEEEeCCCCCcc
Q 019775 120 VVPCAKAKGAYLVSVTSVEGNAL 142 (336)
Q Consensus 120 ~~~~ak~~g~~vi~IT~~~~s~l 142 (336)
+++.|++-|+..+.-+=..+.|.
T Consensus 94 ~~~la~~~~~~~~i~~l~~e~~~ 116 (134)
T PRK04148 94 ILELAKKINVPLIIKPLSGEEPI 116 (134)
T ss_pred HHHHHHHcCCCEEEEcCCCCCCC
Confidence 78999999999988776666543
No 425
>PRK05569 flavodoxin; Provisional
Probab=61.91 E-value=36 Score=26.30 Aligned_cols=76 Identities=18% Similarity=0.180 Sum_probs=46.8
Q ss_pred EEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeC--CCC-c--HHHHHHHHHHHH---cC
Q 019775 57 IFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSK--SGN-T--EELLKVVPCAKA---KG 128 (336)
Q Consensus 57 I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~--sG~-~--~~~~~~~~~ak~---~g 128 (336)
+|.-+.|++..+|+.++..+...|..+...+-.+.- ...+.+-|.+++-|- .+. . +.+...++.++. +|
T Consensus 7 iY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~---~~~~~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~~~~~ 83 (141)
T PRK05569 7 IYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAK---VEDVLEADAVAFGSPSMDNNNIEQEEMAPFLDQFKLTPNEN 83 (141)
T ss_pred EEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCC---HHHHhhCCEEEEECCCcCCCcCChHHHHHHHHHhhccCcCC
Confidence 455567889999999999999888776554321110 123446677777764 343 2 467777776653 34
Q ss_pred CeEEEEe
Q 019775 129 AYLVSVT 135 (336)
Q Consensus 129 ~~vi~IT 135 (336)
-++++++
T Consensus 84 K~v~~f~ 90 (141)
T PRK05569 84 KKCILFG 90 (141)
T ss_pred CEEEEEe
Confidence 4555554
No 426
>PRK08727 hypothetical protein; Validated
Probab=61.76 E-value=31 Score=29.54 Aligned_cols=88 Identities=18% Similarity=0.253 Sum_probs=53.6
Q ss_pred CeEEEEeccchH--HHHHHHHHHHHhcCCeeeecCCcccc---ccccCCCCCCcEEEE---EeCCCCc---HHHHHHHHH
Q 019775 55 GTIFFTGVGKSG--FVANKISQTLISLGIKSGFLNPLDAL---HGDIGILSSDDILVM---FSKSGNT---EELLKVVPC 123 (336)
Q Consensus 55 ~~I~i~G~G~s~--~~a~~~~~~l~~~g~~~~~~~~~~~~---~~~~~~~~~~dlvi~---iS~sG~~---~~~~~~~~~ 123 (336)
+.+|++|.-.+. +++..+...+.+.|..+.+++-.+.. ......+..-|++++ -..+|.. ..+.++...
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~ 121 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDGLESIAGQREDEVALFDFHNR 121 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeCcccccCChHHHHHHHHHHHH
Confidence 469999974433 67778888888888888776532211 112223445566554 1223333 346677778
Q ss_pred HHHcCCeEEEEeCCCCCcc
Q 019775 124 AKAKGAYLVSVTSVEGNAL 142 (336)
Q Consensus 124 ak~~g~~vi~IT~~~~s~l 142 (336)
.+++|.++|..++.....+
T Consensus 122 ~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 122 ARAAGITLLYTARQMPDGL 140 (233)
T ss_pred HHHcCCeEEEECCCChhhh
Confidence 8888888887777644433
No 427
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.43 E-value=25 Score=33.80 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=22.9
Q ss_pred CeEEEEeccchHHHHHHHHHHHHhcCCeeeecC
Q 019775 55 GTIFFTGVGKSGFVANKISQTLISLGIKSGFLN 87 (336)
Q Consensus 55 ~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~ 87 (336)
++|.++|.|.|...+..+ |.+.|..+++..
T Consensus 9 ~~v~v~G~G~sG~~~~~~---l~~~g~~v~~~d 38 (468)
T PRK04690 9 RRVALWGWGREGRAAYRA---LRAHLPAQALTL 38 (468)
T ss_pred CEEEEEccchhhHHHHHH---HHHcCCEEEEEc
Confidence 589999999887665544 667888877765
No 428
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=61.21 E-value=38 Score=33.76 Aligned_cols=57 Identities=12% Similarity=0.219 Sum_probs=39.4
Q ss_pred CCCcEEEEEeCCCC-c----------HHHHHHHHHHHHcCCeEEEEeCCCCCccccccC-EEEEcCCCcc
Q 019775 100 SSDDILVMFSKSGN-T----------EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCD-MNVHLPVERE 157 (336)
Q Consensus 100 ~~~dlvi~iS~sG~-~----------~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad-~~i~~~~~~~ 157 (336)
..-|++|++..... + ......+..++++|+++|+|-.. .++.+..|| ..+.+.-+++
T Consensus 169 ~~a~~il~wG~Np~~t~~~~~~~~~~~~~~~~~~~ar~~GaklIvIDPr-~t~tA~~add~~l~irPGTD 237 (609)
T cd02769 169 EHTELVVAFGADPLKNAQIAWGGIPDHQAYSYLKALKDRGIRFISISPL-RDDTAAELGAEWIAIRPGTD 237 (609)
T ss_pred hhCCeEEEECCChHHhCcccccccCCcchHHHHHHHHhCCCEEEEEcCC-CCcchhhhcCcEeccCCCcH
Confidence 45678888865532 2 12345567889999999999875 566667775 7887766655
No 429
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=61.09 E-value=30 Score=26.32 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=23.9
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEe
Q 019775 99 LSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVT 135 (336)
Q Consensus 99 ~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT 135 (336)
+.+-|++|=|| ....+.+.++.+.++|.++|.=|
T Consensus 65 ~~~~DVvIDfT---~p~~~~~~~~~~~~~g~~~ViGT 98 (124)
T PF01113_consen 65 LEEADVVIDFT---NPDAVYDNLEYALKHGVPLVIGT 98 (124)
T ss_dssp TTH-SEEEEES----HHHHHHHHHHHHHHT-EEEEE-
T ss_pred cccCCEEEEcC---ChHHhHHHHHHHHhCCCCEEEEC
Confidence 44578888888 55777888999999999977644
No 430
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=60.73 E-value=85 Score=28.29 Aligned_cols=116 Identities=17% Similarity=0.174 Sum_probs=71.5
Q ss_pred CChhHHHHHHHHHHc---CCCeEEEEec---cchHHHHHHHHHHHHhcCCeeeecCCccccccccC----CCCCCc--EE
Q 019775 38 LSLPHTLTFTQTLLK---CRGTIFFTGV---GKSGFVANKISQTLISLGIKSGFLNPLDALHGDIG----ILSSDD--IL 105 (336)
Q Consensus 38 ~~~~~i~~~~~~i~~---a~~~I~i~G~---G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~----~~~~~d--lv 105 (336)
+++++++++.+.+.+ ..+-|.+-|. |...-.-..+...+++.|.++.+=.++..+...+. .++++. +-
T Consensus 111 is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg~~L~~~L~~~P~lIKPN~~EL~ 190 (310)
T COG1105 111 ISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSGEALLAALEAKPWLIKPNREELE 190 (310)
T ss_pred CCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECChHHHHHHHccCCcEEecCHHHHH
Confidence 455666666666644 2134555553 44444445555666667888887655544432222 133332 33
Q ss_pred EEEeCCCCc-HHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcC
Q 019775 106 VMFSKSGNT-EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLP 153 (336)
Q Consensus 106 i~iS~sG~~-~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~ 153 (336)
..+...-.+ .+.+++++....+|+..|.||.-..+.+.--.+-++.+.
T Consensus 191 ~~~g~~~~~~~d~i~~a~~l~~~g~~~ViVSlG~~Gal~~~~~~~~~a~ 239 (310)
T COG1105 191 ALFGRELTTLEDVIKAARELLAEGIENVIVSLGADGALLVTAEGVYFAS 239 (310)
T ss_pred HHhCCCCCChHHHHHHHHHHHHCCCCEEEEEecCcccEEEccCCeEEEe
Confidence 334444333 478888888899999999999999998877777766665
No 431
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=60.03 E-value=21 Score=30.80 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=44.1
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCC
Q 019775 99 LSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPV 154 (336)
Q Consensus 99 ~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~ 154 (336)
+.+-|++|++-.|........+++.++++|+++|.|-.. .+++-..+|+.+.-..
T Consensus 175 ~~~~dl~lviGTsl~V~p~~~l~~~~~~~~~~~i~iN~~-~~~~~~~~~~~i~~~~ 229 (242)
T PRK00481 175 LEEADLFIVIGTSLVVYPAAGLPYEAREHGAKTVEINLE-PTPLDSLFDLVIHGKA 229 (242)
T ss_pred HhcCCEEEEECCCceEcCHhHHHHHHHHCCCeEEEECCC-CCCCCCccCEEEECCH
Confidence 556799999999999888889999999999998888754 5666666787776543
No 432
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.03 E-value=23 Score=33.73 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=22.5
Q ss_pred eEEEEeccchHHHHHHHHHHHHhcCCeeeecC
Q 019775 56 TIFFTGVGKSGFVANKISQTLISLGIKSGFLN 87 (336)
Q Consensus 56 ~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~ 87 (336)
+|+|+|.|.|...| ++.|.+.|..+....
T Consensus 2 ~v~viG~G~sG~s~---a~~l~~~G~~V~~~D 30 (459)
T PRK02705 2 IAHVIGLGRSGIAA---ARLLKAQGWEVVVSD 30 (459)
T ss_pred eEEEEccCHHHHHH---HHHHHHCCCEEEEEC
Confidence 69999999988765 555777888777655
No 433
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=59.76 E-value=23 Score=32.96 Aligned_cols=49 Identities=12% Similarity=0.102 Sum_probs=25.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEE--------eCCCCCccccccCEEEEc
Q 019775 101 SDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSV--------TSVEGNALAAVCDMNVHL 152 (336)
Q Consensus 101 ~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~I--------T~~~~s~l~~~ad~~i~~ 152 (336)
+-|++|.+.+.+-+. .+++.|+..|++++.- =.+.+-.+++++|.++..
T Consensus 89 kPd~vi~~g~~~~~~---~~a~aa~~~gip~v~~i~P~~waw~~~~~r~l~~~~d~v~~~ 145 (385)
T TIGR00215 89 KPDLLVGIDAPDFNL---TKELKKKDPGIKIIYYISPQVWAWRKWRAKKIEKATDFLLAI 145 (385)
T ss_pred CCCEEEEeCCCCccH---HHHHHHhhCCCCEEEEeCCcHhhcCcchHHHHHHHHhHhhcc
Confidence 456666666433332 3445566667776653 112222455666666554
No 434
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=59.59 E-value=60 Score=29.98 Aligned_cols=106 Identities=8% Similarity=-0.008 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHcCC-CeEEEEeccchHHHHHHHHHHHH-hcCCeeeecCCcc----------c-cccccCCCCCCcEEEE
Q 019775 41 PHTLTFTQTLLKCR-GTIFFTGVGKSGFVANKISQTLI-SLGIKSGFLNPLD----------A-LHGDIGILSSDDILVM 107 (336)
Q Consensus 41 ~~i~~~~~~i~~a~-~~I~i~G~G~s~~~a~~~~~~l~-~~g~~~~~~~~~~----------~-~~~~~~~~~~~dlvi~ 107 (336)
+.++.+++.+.+.+ +.|.+++.+....-..++..+|. .+|-+-+...... . .......+..-|++++
T Consensus 72 eAl~~ia~~l~~~~~~si~~~~g~~~~~e~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~ 151 (375)
T cd02773 72 EALAAIAKALKGVKPDEIAAIAGDLADVESMVALKDLLNKLGSENLACEQDGPDLPADLRSNYLFNTTIAGIEEADAVLL 151 (375)
T ss_pred HHHHHHHHHHhhcCcCcEEEEeCCCCCHHHHHHHHHHHHHhCCCcccccccccccccccccccccCCCHHHHhhCCEEEE
Confidence 45666666665441 36877766544333333444443 3453222111100 0 0011223556788888
Q ss_pred EeCCC-Cc-HHH-HHHHHHHHHcCCeEEEEeCCCCCccccccC
Q 019775 108 FSKSG-NT-EEL-LKVVPCAKAKGAYLVSVTSVEGNALAAVCD 147 (336)
Q Consensus 108 iS~sG-~~-~~~-~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad 147 (336)
+.... .+ +-. .++.+..+++|++++.|=.... ...+.+|
T Consensus 152 ~G~N~~~~~p~~~~~~~~~~~~~g~kli~idp~~~-~t~~~~~ 193 (375)
T cd02773 152 VGTNPRFEAPVLNARIRKAWLHGGLKVGVIGPPVD-LTYDYDH 193 (375)
T ss_pred EcCCcchhchHHHHHHHHHHHcCCCEEEEEcCccc-cchhhcc
Confidence 87654 33 222 2333344556999999965433 3334454
No 435
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.51 E-value=30 Score=33.47 Aligned_cols=30 Identities=17% Similarity=0.362 Sum_probs=24.3
Q ss_pred CeEEEEeccchHHHHHHHHHHHHhcCCeeeecC
Q 019775 55 GTIFFTGVGKSGFVANKISQTLISLGIKSGFLN 87 (336)
Q Consensus 55 ~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~ 87 (336)
++|+++|.|.|... ++..|.+.|..+....
T Consensus 8 ~~i~v~G~G~sG~s---~a~~L~~~G~~v~~~D 37 (498)
T PRK02006 8 PMVLVLGLGESGLA---MARWCARHGARLRVAD 37 (498)
T ss_pred CEEEEEeecHhHHH---HHHHHHHCCCEEEEEc
Confidence 48999999998843 6777888998887765
No 436
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=59.37 E-value=1.1e+02 Score=25.88 Aligned_cols=100 Identities=14% Similarity=0.194 Sum_probs=63.1
Q ss_pred CeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCcc--ccccc------------cCCCCCCcEEEEEeCCCCcHHHHHH
Q 019775 55 GTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLD--ALHGD------------IGILSSDDILVMFSKSGNTEELLKV 120 (336)
Q Consensus 55 ~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~--~~~~~------------~~~~~~~dlvi~iS~sG~~~~~~~~ 120 (336)
++|.++|.|.- |.-=...|.+.|-.++.+.+.. .+... ...-.-.+..++|.-+++...-.++
T Consensus 13 k~VlvvGgG~v---a~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaAt~d~~ln~~i 89 (210)
T COG1648 13 KKVLVVGGGSV---ALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDLDDAFLVIAATDDEELNERI 89 (210)
T ss_pred CEEEEECCCHH---HHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhhcCceEEEEeCCCHHHHHHH
Confidence 48999998864 3334466667788887776432 11110 0111122378888889998888999
Q ss_pred HHHHHHcCCeEEEEeCCCCC-----ccccccCEEEEcCCCcc
Q 019775 121 VPCAKAKGAYLVSVTSVEGN-----ALAAVCDMNVHLPVERE 157 (336)
Q Consensus 121 ~~~ak~~g~~vi~IT~~~~s-----~l~~~ad~~i~~~~~~~ 157 (336)
.+.|++++..+-.+.....+ .+-+..++.+.++++..
T Consensus 90 ~~~a~~~~i~vNv~D~p~~~~f~~Pa~~~r~~l~iaIsT~G~ 131 (210)
T COG1648 90 AKAARERRILVNVVDDPELCDFIFPAIVDRGPLQIAISTGGK 131 (210)
T ss_pred HHHHHHhCCceeccCCcccCceecceeeccCCeEEEEECCCC
Confidence 99999999888877765432 22344556666655543
No 437
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=59.29 E-value=1.5e+02 Score=29.00 Aligned_cols=110 Identities=11% Similarity=-0.062 Sum_probs=57.2
Q ss_pred hcCChhHHHHHHHHHHcCCCeEEE-EeccchH----HHHHHHHHHHH----hcCCeeeecCCccccccccCCCCCCcEEE
Q 019775 36 QHLSLPHTLTFTQTLLKCRGTIFF-TGVGKSG----FVANKISQTLI----SLGIKSGFLNPLDALHGDIGILSSDDILV 106 (336)
Q Consensus 36 ~~~~~~~i~~~~~~i~~a~~~I~i-~G~G~s~----~~a~~~~~~l~----~~g~~~~~~~~~~~~~~~~~~~~~~dlvi 106 (336)
.-++.++|.++++++.+++.++.+ .|.|.+. .........|. .+|.+= +.. . ......+=.
T Consensus 292 tGv~~~~I~~lA~~~a~~~~~~~~~~~~g~~~~~~G~~~~~ai~~L~~ltG~ig~~G-----G~~-~----~~~~~~ik~ 361 (523)
T cd02757 292 SGIPAETIERVAREFATAAPAAAAFTWRGATMQNRGSYNSMACHALNGLVGSIDSKG-----GLC-P----NMGVPKIKV 361 (523)
T ss_pred HCcCHHHHHHHHHHHHhcCCcEEEecCccccccCChHHHHHHHHHHHHHhCCCCCCC-----CCc-C----CCCCCCceE
Confidence 357788999999999887435544 4555433 11112222222 223211 111 0 011112323
Q ss_pred EEeCCCC----cHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775 107 MFSKSGN----TEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE 157 (336)
Q Consensus 107 ~iS~sG~----~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~ 157 (336)
+|...++ .++..+..+.+++ +..++..+...++-+.+||++|...+.-|
T Consensus 362 ~~~~~~Np~~~~pd~~~~~eal~~--~~~~V~~d~~~teTa~~ADiVLP~~~~~E 414 (523)
T cd02757 362 YFTYLDNPVFSNPDGMSWEEALAK--IPFHVHLSPFMSETTYFADIVLPDGHHFE 414 (523)
T ss_pred EEEccCCccccCCCHHHHHHHHHC--CCeEEEEeCCcCchHhhCCEEecCCChhh
Confidence 3333333 2444455555553 44555555667888999999998876655
No 438
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=59.23 E-value=1.4e+02 Score=26.94 Aligned_cols=160 Identities=16% Similarity=0.197 Sum_probs=91.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCChhH------HHHHHHHHH----cCCCeEEEEeccchH--HHHHHHHHHHHhcCCee
Q 019775 16 SENTLLDLFKSQQDHLNYFFQHLSLPH------TLTFTQTLL----KCRGTIFFTGVGKSG--FVANKISQTLISLGIKS 83 (336)
Q Consensus 16 ~~~~~~~~~~~~~~~l~~~~~~~~~~~------i~~~~~~i~----~a~~~I~i~G~G~s~--~~a~~~~~~l~~~g~~~ 83 (336)
.++++..+.+....++-+....+.... =.+++..+. ++ .+|=|.|.+.+. .+-..|...|...|..|
T Consensus 4 ~~~l~e~l~~GdrrAlARaITlvEs~~~~h~~~a~~ll~~l~p~tG~a-~viGITG~PGaGKSTli~~L~~~l~~~G~rV 82 (323)
T COG1703 4 VDELIERLLAGDRRALARAITLVESRRPDHRALARELLRALYPRTGNA-HVIGITGVPGAGKSTLIEALGRELRERGHRV 82 (323)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCchhhhHHHHHHHHHhhcCCCC-cEEEecCCCCCchHHHHHHHHHHHHHCCcEE
Confidence 345555555555555555554442211 234455543 44 578888875544 56677788888888877
Q ss_pred eec--CCccccccc--------cCCCC-CCcEEEE-EeC----CCCcHHHHHHHHHHHHcCCeEEEEe----CCCCCccc
Q 019775 84 GFL--NPLDALHGD--------IGILS-SDDILVM-FSK----SGNTEELLKVVPCAKAKGAYLVSVT----SVEGNALA 143 (336)
Q Consensus 84 ~~~--~~~~~~~~~--------~~~~~-~~dlvi~-iS~----sG~~~~~~~~~~~ak~~g~~vi~IT----~~~~s~l~ 143 (336)
-.+ .++.....- +..+. ...++|= .+. .|-+..+.++++.+...|..+|.|= +..+-.+.
T Consensus 83 aVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~ 162 (323)
T COG1703 83 AVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIA 162 (323)
T ss_pred EEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHh
Confidence 553 332221111 11121 2333332 233 3446788999999999999988774 34455789
Q ss_pred cccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHH
Q 019775 144 AVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVA 180 (336)
Q Consensus 144 ~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~ 180 (336)
+.+|.++++....- ....+ .-....|-+.|+++
T Consensus 163 ~~aDt~~~v~~pg~--GD~~Q--~iK~GimEiaDi~v 195 (323)
T COG1703 163 NMADTFLVVMIPGA--GDDLQ--GIKAGIMEIADIIV 195 (323)
T ss_pred hhcceEEEEecCCC--CcHHH--HHHhhhhhhhheee
Confidence 99999988755432 11112 23355667777653
No 439
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=58.75 E-value=1.4e+02 Score=27.81 Aligned_cols=134 Identities=19% Similarity=0.145 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCC----hhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCcccc
Q 019775 17 ENTLLDLFKSQQDHLNYFFQHLS----LPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDAL 92 (336)
Q Consensus 17 ~~~~~~~~~~~~~~l~~~~~~~~----~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~ 92 (336)
.+-..+++++-+.+|+.=...+- ...+.-+.--|.+++++|. .+...-...-..|..-|.++|+.+.++.+.+ .
T Consensus 60 ~NPT~~vlE~RiAaLEGG~aa~a~aSG~AA~~~ai~~la~aGD~iV-ss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~d-~ 137 (426)
T COG2873 60 MNPTTDVLEERIAALEGGVAALAVASGQAAITYAILNLAGAGDNIV-SSSKLYGGTYNLFSHTLKRLGIEVRFVDPDD-P 137 (426)
T ss_pred cCchHHHHHHHHHHhhcchhhhhhccchHHHHHHHHHhccCCCeeE-eeccccCchHHHHHHHHHhcCcEEEEeCCCC-H
Confidence 34455666666776665444432 2344444455566656664 3322222233456777999999999997554 3
Q ss_pred ccccCCCCCCcEEEEE---eCC-CCcHHHHHHHHHHHHcCCeEEEE----eCCCCCccccccCEEEEc
Q 019775 93 HGDIGILSSDDILVMF---SKS-GNTEELLKVVPCAKAKGAYLVSV----TSVEGNALAAVCDMNVHL 152 (336)
Q Consensus 93 ~~~~~~~~~~dlvi~i---S~s-G~~~~~~~~~~~ak~~g~~vi~I----T~~~~s~l~~~ad~~i~~ 152 (336)
......++++.=.|.+ +.+ +...++-.+++.|+++|++.|+= |..--.|+..-||+++..
T Consensus 138 ~~~~~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpyl~rP~~hGADIVvHS 205 (426)
T COG2873 138 ENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYLCRPIEHGADIVVHS 205 (426)
T ss_pred HHHHHHhCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCcceecchhhcCCCEEEEe
Confidence 3334456676654444 333 33477888999999999987741 223334666668888643
No 440
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=58.68 E-value=87 Score=26.47 Aligned_cols=66 Identities=9% Similarity=0.113 Sum_probs=47.4
Q ss_pred EEEEeccchHHHHHHHHHHHHhcCCeeeecCCcc-ccccccCCCCCCcEEEEEeCCCCcHHHHHHHHH
Q 019775 57 IFFTGVGKSGFVANKISQTLISLGIKSGFLNPLD-ALHGDIGILSSDDILVMFSKSGNTEELLKVVPC 123 (336)
Q Consensus 57 I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~-~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ 123 (336)
+.+.++ ....+...++..-...++.+...++.. ........++.+.+.|.+|.+|.++-+.+.++.
T Consensus 75 lviaAt-~d~~ln~~i~~~a~~~~i~vNv~D~p~~~~f~~Pa~~~r~~l~iaIsT~G~sP~la~~ir~ 141 (210)
T COG1648 75 LVIAAT-DDEELNERIAKAARERRILVNVVDDPELCDFIFPAIVDRGPLQIAISTGGKSPVLARLLRE 141 (210)
T ss_pred EEEEeC-CCHHHHHHHHHHHHHhCCceeccCCcccCceecceeeccCCeEEEEECCCCChHHHHHHHH
Confidence 444444 445566677777788899998887544 233345567889999999999999988777654
No 441
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=58.65 E-value=12 Score=24.87 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHcCCeEEEEeCCC
Q 019775 115 EELLKVVPCAKAKGAYLVSVTSVE 138 (336)
Q Consensus 115 ~~~~~~~~~ak~~g~~vi~IT~~~ 138 (336)
....++++.|+++|.+.++||+..
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCC
Confidence 347789999999999999999975
No 442
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=58.42 E-value=28 Score=27.42 Aligned_cols=78 Identities=15% Similarity=0.147 Sum_probs=55.1
Q ss_pred CeEEEEeccchH--HHHHHHHHHHHhcCCeeeecCC---ccccccccCCCCCCcEEEEEeCCCCcHH-HHHHHHHHHHcC
Q 019775 55 GTIFFTGVGKSG--FVANKISQTLISLGIKSGFLNP---LDALHGDIGILSSDDILVMFSKSGNTEE-LLKVVPCAKAKG 128 (336)
Q Consensus 55 ~~I~i~G~G~s~--~~a~~~~~~l~~~g~~~~~~~~---~~~~~~~~~~~~~~dlvi~iS~sG~~~~-~~~~~~~ak~~g 128 (336)
-||.+.=.|... .=+..++..|...|+.++...- .++.... ..-+.-|++.+.|.+|...+ +-.+++.++++|
T Consensus 13 prvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~a-A~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G 91 (143)
T COG2185 13 PRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRA-AVEEDVDVIGVSSLDGGHLTLVPGLVEALREAG 91 (143)
T ss_pred ceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHH-HHhcCCCEEEEEeccchHHHHHHHHHHHHHHhC
Confidence 478887778655 4567778888899999998663 3332221 12345578888899998866 556689999999
Q ss_pred CeEEE
Q 019775 129 AYLVS 133 (336)
Q Consensus 129 ~~vi~ 133 (336)
..-|.
T Consensus 92 ~~~i~ 96 (143)
T COG2185 92 VEDIL 96 (143)
T ss_pred CcceE
Confidence 87655
No 443
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=58.33 E-value=25 Score=25.42 Aligned_cols=74 Identities=9% Similarity=0.063 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHhcCC-eeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHH--cCCeEEEEeCCCCC
Q 019775 65 SGFVANKISQTLISLGI-KSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKA--KGAYLVSVTSVEGN 140 (336)
Q Consensus 65 s~~~a~~~~~~l~~~g~-~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~--~g~~vi~IT~~~~s 140 (336)
.......+...|...|. .+....+.......+....++=+++=+..++ .+..++++..++ .++++|.+|+....
T Consensus 7 ~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~--~~~~~~~~~i~~~~~~~~ii~~t~~~~~ 83 (112)
T PF00072_consen 7 DPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPD--GDGLELLEQIRQINPSIPIIVVTDEDDS 83 (112)
T ss_dssp SHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSS--SBHHHHHHHHHHHTTTSEEEEEESSTSH
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeecc--ccccccccccccccccccEEEecCCCCH
Confidence 44556667777777888 7777777666555444443333333333444 344455555555 46999999977664
No 444
>cd05637 SIS_PGI_PMI_2 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the second SIS domain.
Probab=58.25 E-value=85 Score=24.26 Aligned_cols=121 Identities=16% Similarity=0.121 Sum_probs=69.1
Q ss_pred HHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccc-cccccCCCC-CCc---EEEEEeCCCCcH--H
Q 019775 44 LTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDA-LHGDIGILS-SDD---ILVMFSKSGNTE--E 116 (336)
Q Consensus 44 ~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~~~-~~d---lvi~iS~sG~~~--~ 116 (336)
++++..+... .-.++|.+....+|.-+...|++..+...+....-+ .++...... +.+ .++.+.-..... .
T Consensus 4 k~LA~~l~g~--~Pvi~g~~~~~~~A~R~k~ql~enAK~~A~~~~lPE~~hn~i~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (132)
T cd05637 4 KELALELAGR--IPIIYGSTLYEPAAYRFKNQLNENAKYPAFYEELPEANHNEIVGWESPLSALPLAVILSDEDDHVRIK 81 (132)
T ss_pred HHHHHHhcCC--CCEEEeccchHHHHHHHHHHHHHHhCCCcccccCchhcccccccccCcccccceEEEecCcccccchh
Confidence 3455555554 567888887779999999999998666555443222 222211111 212 333232222221 2
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCC
Q 019775 117 LLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLT 190 (336)
Q Consensus 117 ~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~ 190 (336)
....+..++++|..+..++....+++ .-.++..++.|....+++...+.+
T Consensus 82 ~r~~~~~~~~~~~~~~~~~~~g~s~l------------------------~rl~~Li~~~d~aSvyLA~~~GvD 131 (132)
T cd05637 82 LRIVITKFEEGGIPYEVIESVGASPL------------------------ARLLSLIYLGDLASVYLALLRGVD 131 (132)
T ss_pred HHHHHHHHHhcCCCeEEEecCCCCHH------------------------HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 22233447788888888887644443 334555677787777777776654
No 445
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=58.11 E-value=55 Score=30.89 Aligned_cols=29 Identities=24% Similarity=0.434 Sum_probs=21.4
Q ss_pred eEEEEeccchHHHHHHHHHHHHhcCCeeeecC
Q 019775 56 TIFFTGVGKSGFVANKISQTLISLGIKSGFLN 87 (336)
Q Consensus 56 ~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~ 87 (336)
+|+|+|.|.|.. .++..|.+.|..|....
T Consensus 1 ~~~~iG~G~~G~---a~a~~l~~~G~~V~~sD 29 (433)
T TIGR01087 1 KILILGLGKTGR---AVARFLHKKGAEVTVTD 29 (433)
T ss_pred CEEEEEeCHhHH---HHHHHHHHCCCEEEEEe
Confidence 489999998876 34555778888777655
No 446
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=57.91 E-value=29 Score=29.59 Aligned_cols=56 Identities=18% Similarity=0.285 Sum_probs=45.1
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCC
Q 019775 98 ILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPV 154 (336)
Q Consensus 98 ~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~ 154 (336)
.+.+-|++|++-.|+...-...+++.++++|+++|.|-.. ..++.+.+|+.|.-..
T Consensus 161 ~~~~~dl~lvlGTsl~v~p~~~l~~~~~~~~~~~i~iN~~-~~~~~~~~~~~i~g~~ 216 (224)
T cd01412 161 ALAKADLFLVIGTSGVVYPAAGLPEEAKERGARVIEINPE-PTPLSPIADFAFRGKA 216 (224)
T ss_pred HHHcCCEEEEECcCccchhHHHHHHHHHHCCCeEEEECCC-CCCCCCcCCEEEECCH
Confidence 3567899999999999988889999999999999988754 5566677788777543
No 447
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=57.84 E-value=24 Score=32.62 Aligned_cols=38 Identities=13% Similarity=0.073 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCC
Q 019775 117 LLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPV 154 (336)
Q Consensus 117 ~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~ 154 (336)
-..+++.|++.|.++++++.++++|-..+||..+..+.
T Consensus 11 ~~~l~~aa~~~G~~v~~~d~~~~~~~~~~ad~~~~~~~ 48 (380)
T TIGR01142 11 GKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVINM 48 (380)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCCchhhhCceEEEcCC
Confidence 45567789999999999999999999999998887654
No 448
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=57.69 E-value=1.5e+02 Score=26.81 Aligned_cols=36 Identities=8% Similarity=-0.136 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcC
Q 019775 118 LKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLP 153 (336)
Q Consensus 118 ~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~ 153 (336)
...++.+.+.|+++..|+++.-+.+-+.+|.+|.-.
T Consensus 161 ~~~a~~L~~~GI~vtlI~Dsav~~~m~~vd~VivGA 196 (310)
T PRK08535 161 HITAKELAEYGIPVTLIVDSAVRYFMKDVDKVVVGA 196 (310)
T ss_pred HHHHHHHHHCCCCEEEEehhHHHHHHHhCCEEEECc
Confidence 557888899999999999998888888899998643
No 449
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=57.48 E-value=99 Score=24.80 Aligned_cols=82 Identities=10% Similarity=0.090 Sum_probs=56.3
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHH---cCC-eEEEEeCCC---CCccccccCEEEEcCCCcccCCCCCCChhHHH
Q 019775 98 ILSSDDILVMFSKSGNTEELLKVVPCAKA---KGA-YLVSVTSVE---GNALAAVCDMNVHLPVERELCPFDLAPVTSTA 170 (336)
Q Consensus 98 ~~~~~dlvi~iS~sG~~~~~~~~~~~ak~---~g~-~vi~IT~~~---~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~ 170 (336)
.+.++|.+|++.-.|..-...+.++...+ .|. .++.+-+-+ +..+.+.||..+.++.= -+...+
T Consensus 63 ~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~~~~v~~~a~~~lSLS~m---------TfpH~l 133 (157)
T PRK00103 63 ALPKGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGLSPAVKKRADQSLSLSKL---------TLPHQL 133 (157)
T ss_pred hCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCccccCHHHHHhcCceEEeccC---------CCcHHH
Confidence 46789999999999997666666655544 454 455444433 33566778888876432 234668
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 019775 171 IQMVFGDTVAIAMMGARN 188 (336)
Q Consensus 171 ~~~~l~d~l~~~~~~~~~ 188 (336)
+-+++++=||.++.-.++
T Consensus 134 arlvL~EQlYRa~tIl~g 151 (157)
T PRK00103 134 VRVLLAEQLYRAWSILAG 151 (157)
T ss_pred HHHHHHHHHHHHHHHHCC
Confidence 888999999887776654
No 450
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=57.21 E-value=27 Score=29.50 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=42.3
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccc--cccCEEEE
Q 019775 98 ILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALA--AVCDMNVH 151 (336)
Q Consensus 98 ~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~--~~ad~~i~ 151 (336)
.+.+.|++|++-.|.....+..+++.++++|++++.|-..+ .+.. ..+|+.+.
T Consensus 166 ~~~~~d~llviGtSl~v~~~~~l~~~~~~~~~~~~~in~~~-~~~~~~~~~~~~~~ 220 (222)
T cd00296 166 ALLEADLVLVIGTSLTVYPAARLLLRAPERGAPVVIINREP-TPADALKKADLVIL 220 (222)
T ss_pred HHhcCCEEEEECCCccccCHHHHHHHHHHCCCcEEEECCCC-CCCCCCCcceEEEe
Confidence 45568999999999999999999999999999999987653 3444 45666543
No 451
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=57.04 E-value=10 Score=29.79 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=25.9
Q ss_pred CCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeC
Q 019775 99 LSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTS 136 (336)
Q Consensus 99 ~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~ 136 (336)
..+-|++|+...+....+.++.++.....+.+++.+-|
T Consensus 65 ~~~~D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~~qN 102 (151)
T PF02558_consen 65 AGPYDLVIVAVKAYQLEQALQSLKPYLDPNTTIVSLQN 102 (151)
T ss_dssp HSTESEEEE-SSGGGHHHHHHHHCTGEETTEEEEEESS
T ss_pred cCCCcEEEEEecccchHHHHHHHhhccCCCcEEEEEeC
Confidence 34568999999888888888877666656545555443
No 452
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=56.96 E-value=1.9e+02 Score=27.94 Aligned_cols=29 Identities=7% Similarity=0.147 Sum_probs=22.8
Q ss_pred CChhHHHHHHHHHHcCCCeEEEEeccchH
Q 019775 38 LSLPHTLTFTQTLLKCRGTIFFTGVGKSG 66 (336)
Q Consensus 38 ~~~~~i~~~~~~i~~a~~~I~i~G~G~s~ 66 (336)
++.+.++++++.+.++++.++++|.|..+
T Consensus 263 v~~~~i~~lA~~~~~~~~~~i~~g~g~~~ 291 (512)
T cd02753 263 VPAEDIREAARMYATAKSAAILWGMGVTQ 291 (512)
T ss_pred cCHHHHHHHHHHHHhCCCeEEEeCchhhh
Confidence 56688999999999875567788887654
No 453
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=56.30 E-value=31 Score=31.72 Aligned_cols=116 Identities=12% Similarity=0.116 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHH--------------------hcCCeeeecC-CccccccccC--
Q 019775 41 PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLI--------------------SLGIKSGFLN-PLDALHGDIG-- 97 (336)
Q Consensus 41 ~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~--------------------~~g~~~~~~~-~~~~~~~~~~-- 97 (336)
+.|++........ ++...++.|++...+-..+..+. ..|....+++ +.+.+.....
T Consensus 28 ~~fE~~~a~~~g~-~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~ 106 (363)
T PF01041_consen 28 EEFEKEFAEYFGV-KYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDIDPETLNIDPEAL 106 (363)
T ss_dssp HHHHHHHHHHHTS-SEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHH
T ss_pred HHHHHHHHHHhCC-CeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEeccCCcCCcCHHHH
Confidence 5666666666777 59999999987754444443322 1244444433 1111111111
Q ss_pred --CCCC-CcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEe-CC-----CCCccccccCEEEEcCCCcc
Q 019775 98 --ILSS-DDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVT-SV-----EGNALAAVCDMNVHLPVERE 157 (336)
Q Consensus 98 --~~~~-~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT-~~-----~~s~l~~~ad~~i~~~~~~~ 157 (336)
.+++ ...+++....|...++-++.+.|+++|+++|==. .. .+-++..+.|+.++......
T Consensus 107 ~~~i~~~t~ai~~~h~~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~~gd~~~fSf~~~K 175 (363)
T PF01041_consen 107 EKAITPKTKAILVVHLFGNPADMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGSFGDIAIFSFHPTK 175 (363)
T ss_dssp HHHHHTTEEEEEEE-GGGB---HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTSSSSEEEEESSTTS
T ss_pred HHHhccCccEEEEecCCCCcccHHHHHHHHHHcCCcEEEccccccCceeCCEeccCCCCceEecCCCCC
Confidence 1333 3677888889999999999999999999887322 11 22245567788877654443
No 454
>PLN00196 alpha-amylase; Provisional
Probab=56.23 E-value=42 Score=31.80 Aligned_cols=77 Identities=23% Similarity=0.406 Sum_probs=50.6
Q ss_pred CeEEEEeccc-h--------HHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEE-eCCCCcHHHHHHHHHH
Q 019775 55 GTIFFTGVGK-S--------GFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMF-SKSGNTEELLKVVPCA 124 (336)
Q Consensus 55 ~~I~i~G~G~-s--------~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~i-S~sG~~~~~~~~~~~a 124 (336)
+.|.+-|+-. + ..+.+. ...|..+|+..+.+++........+ ....|..=+= |.-|...+..++++.|
T Consensus 24 ~~v~~Q~F~W~~~~~~gg~~~~i~~k-ldyL~~LGvtaIWL~P~~~s~s~hG-Y~~~D~y~ld~~~fGt~~elk~Lv~~a 101 (428)
T PLN00196 24 GQVLFQGFNWESWKQNGGWYNFLMGK-VDDIAAAGITHVWLPPPSHSVSEQG-YMPGRLYDLDASKYGNEAQLKSLIEAF 101 (428)
T ss_pred CCEEEEeeccCCCCCCCcCHHHHHHH-HHHHHHcCCCEEEeCCCCCCCCCCC-CCccccCCCCcccCCCHHHHHHHHHHH
Confidence 3577777652 2 234444 4678889999999987544322211 2233333222 5679999999999999
Q ss_pred HHcCCeEEE
Q 019775 125 KAKGAYLVS 133 (336)
Q Consensus 125 k~~g~~vi~ 133 (336)
+++|++||+
T Consensus 102 H~~GIkVil 110 (428)
T PLN00196 102 HGKGVQVIA 110 (428)
T ss_pred HHCCCEEEE
Confidence 999999883
No 455
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=56.16 E-value=59 Score=26.47 Aligned_cols=75 Identities=13% Similarity=0.133 Sum_probs=44.0
Q ss_pred EEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCc---HHHHHHHHHHHHcCCeEEE
Q 019775 57 IFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNT---EELLKVVPCAKAKGAYLVS 133 (336)
Q Consensus 57 I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~---~~~~~~~~~ak~~g~~vi~ 133 (336)
|.++.+|+.+.+ ...+...|..+..++....... . ....-|.+|+---+|.. ....++++.+.+++.++++
T Consensus 1 i~i~d~g~~~~~----~~~l~~~G~~~~~~~~~~~~~~-~-~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~PvlG 74 (178)
T cd01744 1 VVVIDFGVKHNI----LRELLKRGCEVTVVPYNTDAEE-I-LKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFG 74 (178)
T ss_pred CEEEecCcHHHH----HHHHHHCCCeEEEEECCCCHHH-H-hhcCCCEEEECCCCCChhHhHHHHHHHHHHHhCCCCEEE
Confidence 467788888755 4455667888877753222111 1 11123443333233332 3466778888889999999
Q ss_pred EeCC
Q 019775 134 VTSV 137 (336)
Q Consensus 134 IT~~ 137 (336)
|+--
T Consensus 75 IC~G 78 (178)
T cd01744 75 ICLG 78 (178)
T ss_pred ECHH
Confidence 9853
No 456
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=56.06 E-value=98 Score=29.39 Aligned_cols=50 Identities=18% Similarity=0.170 Sum_probs=28.8
Q ss_pred cEEEEEeCC---CCcHHHHHHHHHHHHcCCeEEEE----eCCCCCccccccCEEEEc
Q 019775 103 DILVMFSKS---GNTEELLKVVPCAKAKGAYLVSV----TSVEGNALAAVCDMNVHL 152 (336)
Q Consensus 103 dlvi~iS~s---G~~~~~~~~~~~ak~~g~~vi~I----T~~~~s~l~~~ad~~i~~ 152 (336)
.++++-+.+ |...++-++++.|+++|+.+|.= +.....|+.--+|+++..
T Consensus 151 klV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~~~pl~~gaDivv~S 207 (431)
T PRK08248 151 KALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYLLRPIEHGADIVVHS 207 (431)
T ss_pred eEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCccccCChhHcCCCEEEEc
Confidence 444444333 55677888899999999776521 111222333457777644
No 457
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=55.94 E-value=60 Score=27.27 Aligned_cols=102 Identities=21% Similarity=0.225 Sum_probs=65.8
Q ss_pred eEEEEeccchHHHHHHHHHHHHhcCCeeeecC--Ccc-----ccccc---------cCCCC------CC----cEEEEEe
Q 019775 56 TIFFTGVGKSGFVANKISQTLISLGIKSGFLN--PLD-----ALHGD---------IGILS------SD----DILVMFS 109 (336)
Q Consensus 56 ~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~--~~~-----~~~~~---------~~~~~------~~----dlvi~iS 109 (336)
-+++.|.|.+..-+.-.++.|...|..+..+- +.. ..... ..... +- |.++.++
T Consensus 52 v~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~~~~l~~~~~v~~~~~~~~~~~~dvIVDalfG~G 131 (203)
T COG0062 52 VLVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARANLKSLGIGGVVKIKELEDEPESADVIVDALFGTG 131 (203)
T ss_pred EEEEECCCCccHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHhhcCCcceeecccccccccCCEEEEeceecC
Confidence 56778889999999999999999986665433 211 00000 00111 22 4577889
Q ss_pred CCCCcHH-HHHHHHHHHHcCCeEEEEeCCC-----CC---ccccccCEEEEcCCCcc
Q 019775 110 KSGNTEE-LLKVVPCAKAKGAYLVSVTSVE-----GN---ALAAVCDMNVHLPVERE 157 (336)
Q Consensus 110 ~sG~~~~-~~~~~~~ak~~g~~vi~IT~~~-----~s---~l~~~ad~~i~~~~~~~ 157 (336)
.+|.-++ ...+++.+.+.+.++|+|==.. .+ ..+-.||+++.+....+
T Consensus 132 ~~g~lrep~a~~Ie~iN~~~~pivAVDiPSGl~~dtG~~~~~av~Ad~TVTf~~~K~ 188 (203)
T COG0062 132 LSGPLREPFASLIEAINASGKPIVAVDIPSGLDADTGEVLGAAVKADLTVTFGALKP 188 (203)
T ss_pred CCCCCccHHHHHHHHHHhcCCceEEEeCCCCcCCCCCcccCcceeccEEEEecCcch
Confidence 9997655 5777899999999999873211 11 22456788887766544
No 458
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=55.77 E-value=95 Score=24.75 Aligned_cols=56 Identities=14% Similarity=0.198 Sum_probs=46.1
Q ss_pred EEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEE
Q 019775 57 IFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLV 132 (336)
Q Consensus 57 I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi 132 (336)
-.|.|.-+.+...+..+..|..+|++.. +-++|.-+....+.+.++.++++|.++|
T Consensus 6 ~IIMGS~SD~~~mk~Aa~~L~~fgi~ye--------------------~~VvSAHRTPe~m~~ya~~a~~~g~~vi 61 (162)
T COG0041 6 GIIMGSKSDWDTMKKAAEILEEFGVPYE--------------------VRVVSAHRTPEKMFEYAEEAEERGVKVI 61 (162)
T ss_pred EEEecCcchHHHHHHHHHHHHHcCCCeE--------------------EEEEeccCCHHHHHHHHHHHHHCCCeEE
Confidence 4678888888999999999998877653 3357888888889999999999999866
No 459
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=55.51 E-value=26 Score=30.09 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=32.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCc
Q 019775 101 SDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNA 141 (336)
Q Consensus 101 ~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~ 141 (336)
+.|++|++|-.+..+---.+-+..++.|.++|.||+.+...
T Consensus 59 ~pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p~~k 99 (276)
T PF01993_consen 59 DPDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDAPTKK 99 (276)
T ss_dssp --SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEGGGGG
T ss_pred CCCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCCCchh
Confidence 56899999999999999999999999999999999976544
No 460
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=55.45 E-value=86 Score=29.18 Aligned_cols=39 Identities=10% Similarity=0.180 Sum_probs=28.9
Q ss_pred HHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCcc
Q 019775 48 QTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLD 90 (336)
Q Consensus 48 ~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~ 90 (336)
+.+... ++|.++|.|. ++.+++..|.+.|..+.++....
T Consensus 139 ~~~~~~-~~vvViGgG~---ig~E~A~~l~~~g~~Vtlv~~~~ 177 (396)
T PRK09754 139 EVLQPE-RSVVIVGAGT---IGLELAASATQRRCKVTVIELAA 177 (396)
T ss_pred HHhhcC-CeEEEECCCH---HHHHHHHHHHHcCCeEEEEecCC
Confidence 334456 5999999884 56777888888899988775443
No 461
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=55.31 E-value=21 Score=30.57 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=36.9
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCc
Q 019775 101 SDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNA 141 (336)
Q Consensus 101 ~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~ 141 (336)
+.|++|++|-.+-.+--..+-+..++.|.++|.||+.+.-.
T Consensus 60 ~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K 100 (277)
T PRK00994 60 KPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKK 100 (277)
T ss_pred CCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccc
Confidence 57999999999999998999999999999999999987664
No 462
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=54.85 E-value=66 Score=29.85 Aligned_cols=47 Identities=11% Similarity=0.190 Sum_probs=30.6
Q ss_pred cCChhHHHHHHHHHH-----------------cCCCeEEEEe-ccchHHHHHHHHHHHHhcCCeeeecC
Q 019775 37 HLSLPHTLTFTQTLL-----------------KCRGTIFFTG-VGKSGFVANKISQTLISLGIKSGFLN 87 (336)
Q Consensus 37 ~~~~~~i~~~~~~i~-----------------~a~~~I~i~G-~G~s~~~a~~~~~~l~~~g~~~~~~~ 87 (336)
.++++.++++.+.|. .- .+|.|+| .|. ++..++..|...|..+..+.
T Consensus 65 ~l~~~~~~~i~~~i~~~s~~~q~~~~~~~~~~~~-~~I~IiGG~Gl---mG~slA~~l~~~G~~V~~~d 129 (374)
T PRK11199 65 GVPPDLIEDVLRRVMRESYSSENDKGFKTLNPDL-RPVVIVGGKGQ---LGRLFAKMLTLSGYQVRILE 129 (374)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhHHhcccccCccc-ceEEEEcCCCh---hhHHHHHHHHHCCCeEEEeC
Confidence 456666666666654 22 4899998 664 55556666676787777665
No 463
>PRK12313 glycogen branching enzyme; Provisional
Probab=54.36 E-value=43 Score=33.59 Aligned_cols=68 Identities=15% Similarity=0.119 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhcCCeeeecCCccccccccC-CCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEE
Q 019775 66 GFVANKISQTLISLGIKSGFLNPLDALHGDIG-ILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVS 133 (336)
Q Consensus 66 ~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~ 133 (336)
..++..+-..|..+|++++.+.+......... -....|..=+=+.-|...+..++++.|+++|++||+
T Consensus 170 ~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~Vil 238 (633)
T PRK12313 170 RELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVIL 238 (633)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 45666666788999999999887544321111 122334433345667789999999999999999884
No 464
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=54.15 E-value=79 Score=27.95 Aligned_cols=40 Identities=10% Similarity=0.103 Sum_probs=26.1
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCC
Q 019775 100 SSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEG 139 (336)
Q Consensus 100 ~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~ 139 (336)
.+-|++|+...+....++++.+...-..+..+|.+.+..+
T Consensus 65 ~~~d~vila~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~ 104 (304)
T PRK06522 65 GPQDLVILAVKAYQLPAALPSLAPLLGPDTPVLFLQNGVG 104 (304)
T ss_pred CCCCEEEEecccccHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 4568888887777777776666544344566777766543
No 465
>CHL00199 infC translation initiation factor 3; Provisional
Probab=53.76 E-value=22 Score=29.19 Aligned_cols=46 Identities=17% Similarity=0.196 Sum_probs=36.6
Q ss_pred cEEEEEeCCCCc---HHHHHHHHHHHHcCCeEEEEeCCCCCccccccCE
Q 019775 103 DILVMFSKSGNT---EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDM 148 (336)
Q Consensus 103 dlvi~iS~sG~~---~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~ 148 (336)
.-|-++...|+. -.+.++++.|++.|...|.|..+...|+++..|+
T Consensus 25 ~~VrlI~~~G~~lGv~~~~eAl~~A~~~~lDLVeVs~~a~PPVCKImdy 73 (182)
T CHL00199 25 PKVRVIDDSGEQLGIFTSEQAIQLAANQGLDLVLVSEKSDPPVCRIIDY 73 (182)
T ss_pred CEEEEECCCCcCCCceeHHHHHHHHHHcCCCEEEECCCCCCCeEEEeeh
Confidence 355566777773 5578899999999999999999988888877654
No 466
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=53.73 E-value=23 Score=26.49 Aligned_cols=64 Identities=14% Similarity=0.109 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCCeeeecCC---ccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCe
Q 019775 67 FVANKISQTLISLGIKSGFLNP---LDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAY 130 (336)
Q Consensus 67 ~~a~~~~~~l~~~g~~~~~~~~---~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~ 130 (336)
.-..+++..|.+.|..+..+.. .+.+.......+++-+.+-.+.+.+.....++++.+|+++..
T Consensus 15 lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~ 81 (121)
T PF02310_consen 15 LGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPN 81 (121)
T ss_dssp HHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCC
Confidence 3455667777778999987742 233333333333444333333577778899999999998665
No 467
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.67 E-value=39 Score=32.13 Aligned_cols=30 Identities=27% Similarity=0.524 Sum_probs=24.3
Q ss_pred CeEEEEeccchHHHHHHHHHHHHhcCCeeeecC
Q 019775 55 GTIFFTGVGKSGFVANKISQTLISLGIKSGFLN 87 (336)
Q Consensus 55 ~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~ 87 (336)
..|.++|.|.|... ++..|.+.|..+....
T Consensus 7 ~~~~v~G~G~sG~s---~a~~L~~~G~~v~~~D 36 (448)
T PRK03803 7 GLHIVVGLGKTGLS---VVRFLARQGIPFAVMD 36 (448)
T ss_pred CeEEEEeecHhHHH---HHHHHHhCCCeEEEEe
Confidence 58999999998764 6677888898887765
No 468
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=53.55 E-value=23 Score=31.62 Aligned_cols=35 Identities=26% Similarity=0.187 Sum_probs=30.8
Q ss_pred EEEEeCCCCc---HHHHHHHHHHHHcC-CeEEEEeCCCC
Q 019775 105 LVMFSKSGNT---EELLKVVPCAKAKG-AYLVSVTSVEG 139 (336)
Q Consensus 105 vi~iS~sG~~---~~~~~~~~~ak~~g-~~vi~IT~~~~ 139 (336)
.+.||.+|+. +.+-++++.+|++| .++.+|||..-
T Consensus 82 ~vtis~~GEPTLy~~L~elI~~~k~~g~~~tflvTNgsl 120 (296)
T COG0731 82 HVTISLSGEPTLYPNLGELIEEIKKRGKKTTFLVTNGSL 120 (296)
T ss_pred EEEEeCCCCcccccCHHHHHHHHHhcCCceEEEEeCCCh
Confidence 6789999995 78999999999999 69999998765
No 469
>PRK05967 cystathionine beta-lyase; Provisional
Probab=53.54 E-value=2e+02 Score=27.04 Aligned_cols=77 Identities=17% Similarity=0.294 Sum_probs=45.6
Q ss_pred HHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCC----CcHHHHHHHHHHHHcCCeEEEEeCCC------CCcccc
Q 019775 75 TLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSG----NTEELLKVVPCAKAKGAYLVSVTSVE------GNALAA 144 (336)
Q Consensus 75 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG----~~~~~~~~~~~ak~~g~~vi~IT~~~------~s~l~~ 144 (336)
.+.+.|..+.+++.... ......++++.-+|.+...+ .-.++.++++.|+++|+.+| .++. ..|+.-
T Consensus 123 ~l~~~Gi~v~~vd~~~~-e~l~~al~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vv--VD~t~a~p~~~~pl~~ 199 (395)
T PRK05967 123 MLKRLGVEVEYYDPEIG-AGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVM--MDNTWATPLYFRPLDF 199 (395)
T ss_pred HHHhcCeEEEEeCCCCH-HHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEE--EECCccCceecChhHc
Confidence 34566877777653211 11122344544456665543 45778888999999997555 3443 355655
Q ss_pred ccCEEEEcCC
Q 019775 145 VCDMNVHLPV 154 (336)
Q Consensus 145 ~ad~~i~~~~ 154 (336)
-+|+++...+
T Consensus 200 GaDivv~S~t 209 (395)
T PRK05967 200 GVDISIHAAT 209 (395)
T ss_pred CCCEEEEecc
Confidence 5898887654
No 470
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=53.42 E-value=77 Score=24.71 Aligned_cols=79 Identities=18% Similarity=0.170 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHcCC-CeEEEEeccc---hHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCc-H
Q 019775 41 PHTLTFTQTLLKCR-GTIFFTGVGK---SGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNT-E 115 (336)
Q Consensus 41 ~~i~~~~~~i~~a~-~~I~i~G~G~---s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~-~ 115 (336)
..+++++++..+.. .+|++.|... ...-|..+...+...|.+. +-++.-..+.+| .
T Consensus 21 ~R~~~a~~l~~~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~-------------------~~I~~e~~s~~T~e 81 (150)
T cd06259 21 ERLDAAAELYRAGPAPKLIVSGGQGPGEGYSEAEAMARYLIELGVPA-------------------EAILLEDRSTNTYE 81 (150)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCH-------------------HHeeecCCCCCHHH
Confidence 46677777776542 3565555543 3457778888888887522 112222334444 5
Q ss_pred HHHHHHHHHHHcCC-eEEEEeCCC
Q 019775 116 ELLKVVPCAKAKGA-YLVSVTSVE 138 (336)
Q Consensus 116 ~~~~~~~~ak~~g~-~vi~IT~~~ 138 (336)
+.....+.++++|. ++++||+..
T Consensus 82 na~~~~~~~~~~~~~~i~lVTs~~ 105 (150)
T cd06259 82 NARFSAELLRERGIRSVLLVTSAY 105 (150)
T ss_pred HHHHHHHHHHhcCCCeEEEECCHH
Confidence 56777788888775 566777653
No 471
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=53.36 E-value=49 Score=26.52 Aligned_cols=75 Identities=27% Similarity=0.413 Sum_probs=43.5
Q ss_pred eEEEEeccchH--HHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCcH---HHHHHHHHHHHcCCe
Q 019775 56 TIFFTGVGKSG--FVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTE---ELLKVVPCAKAKGAY 130 (336)
Q Consensus 56 ~I~i~G~G~s~--~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~---~~~~~~~~ak~~g~~ 130 (336)
-|++.|.-.|. .+|..+..+|...|.+++.+. ++.+...+ .+ |+ .+|..+... .+.++++.+.+.|..
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD-gD~lR~~l---~~-dl--~fs~~dR~e~~rr~~~~A~ll~~~G~i 76 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLD-GDNLRHGL---NA-DL--GFSKEDREENIRRIAEVAKLLADQGII 76 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE-HHHHCTTT---TT-T----SSHHHHHHHHHHHHHHHHHHHHTTSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec-Ccchhhcc---CC-CC--CCCHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 57888874433 899999999999999999994 44443322 22 33 233222223 345555666677876
Q ss_pred EEEEeCC
Q 019775 131 LVSVTSV 137 (336)
Q Consensus 131 vi~IT~~ 137 (336)
+|+=+-.
T Consensus 77 vIva~is 83 (156)
T PF01583_consen 77 VIVAFIS 83 (156)
T ss_dssp EEEE---
T ss_pred EEEeecc
Confidence 6654443
No 472
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=53.04 E-value=22 Score=29.13 Aligned_cols=47 Identities=13% Similarity=0.202 Sum_probs=36.7
Q ss_pred CcEEEEEeCCCCc---HHHHHHHHHHHHcCCeEEEEeCCCCCccccccCE
Q 019775 102 DDILVMFSKSGNT---EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDM 148 (336)
Q Consensus 102 ~dlvi~iS~sG~~---~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~ 148 (336)
..-|-++...|.. -...++++.|++.|...|.|+.+...|+++..|+
T Consensus 19 ~~~Vrli~~dG~~lgv~~~~eAl~~A~~~~lDLV~v~~~~~PPVckI~dy 68 (177)
T PRK00028 19 AREVRLIGDDGEQLGIVSTREALELAEEAGLDLVEISPNAKPPVCKIMDY 68 (177)
T ss_pred CCEEEEECCCCcCCCceeHHHHHHHHHHcCCCEEEECCCCCCCEEEEEeH
Confidence 3456666777763 4577899999999999999999888888776554
No 473
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=53.00 E-value=77 Score=30.41 Aligned_cols=99 Identities=19% Similarity=0.127 Sum_probs=60.7
Q ss_pred EEEEeccchHHHHHHHHHHHHhcCCeeeecC--Cc--cc--------------cccc---cCCCC-CCc----EEEEEeC
Q 019775 57 IFFTGVGKSGFVANKISQTLISLGIKSGFLN--PL--DA--------------LHGD---IGILS-SDD----ILVMFSK 110 (336)
Q Consensus 57 I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~--~~--~~--------------~~~~---~~~~~-~~d----lvi~iS~ 110 (336)
++++|.|.+..-+.-+++.|...|.+|.++. .. .. +... ...+. +.| .++.+++
T Consensus 63 lVlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~dlIVDaLfGtG~ 142 (462)
T PLN03049 63 LALCGPGNNGGDGLVAARHLHHFGYKPSICYPKRTDKPLYNGLVTQLESLSVPFLSVEDLPSDLSSQFDIVVDAMFGFSF 142 (462)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCceEEEEECCCCCHHHHHHHHHHHHcCCceecccccchhhccCCcEEEEecccccc
Confidence 4668999999999999999999998886652 10 00 0000 00111 223 3467788
Q ss_pred CCCcH-HHHHHHHHHHHcC--CeEEEEe---------CCCCCccccccCEEEEcCCCc
Q 019775 111 SGNTE-ELLKVVPCAKAKG--AYLVSVT---------SVEGNALAAVCDMNVHLPVER 156 (336)
Q Consensus 111 sG~~~-~~~~~~~~ak~~g--~~vi~IT---------~~~~s~l~~~ad~~i~~~~~~ 156 (336)
+|.-+ ...++++.+.+.+ +++|+|= +... ..+=.||+++.+....
T Consensus 143 ~g~l~~~~~~lI~~iN~~~~~~~vvAVDiPSGl~~dtG~~~-~~av~Ad~TvTf~~~K 199 (462)
T PLN03049 143 HGAPRPPFDDLIQKLVRAAGPPPIVSVDIPSGWHVEEGDVN-GEGLKPDMLVSLTAPK 199 (462)
T ss_pred CCCCchHHHHHHHHHHhcCCCCcEEEEECCCCccCCCCCcC-CceecCCEEEEcccCC
Confidence 88764 5667778877764 7899882 2111 1234578887765543
No 474
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=52.92 E-value=23 Score=29.51 Aligned_cols=33 Identities=27% Similarity=0.257 Sum_probs=29.6
Q ss_pred eCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCc
Q 019775 109 SKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNA 141 (336)
Q Consensus 109 S~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~ 141 (336)
-+||.|.++++.++..+.+|.+|++.|+.-+.-
T Consensus 13 M~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~R 45 (201)
T COG1435 13 MFSGKTEELLRRARRYKEAGMKVLVFKPAIDTR 45 (201)
T ss_pred CcCcchHHHHHHHHHHHHcCCeEEEEecccccc
Confidence 369999999999999999999999999876654
No 475
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=52.70 E-value=75 Score=33.13 Aligned_cols=93 Identities=12% Similarity=0.119 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecC-C---ccc-------c------ccccCCCCCCc
Q 019775 41 PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLN-P---LDA-------L------HGDIGILSSDD 103 (336)
Q Consensus 41 ~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~-~---~~~-------~------~~~~~~~~~~d 103 (336)
+.++.+++.+.+. +..+.+|.+.+..-..++..++ +|-+-+... + ... + ......+..-|
T Consensus 297 eAl~~ia~~l~~~-~~~~G~~s~~~t~e~~~~l~k~--~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad 373 (847)
T PRK08166 297 QALQGAADILRQA-KKVIGIGSPRASLESNFALREL--VGAENFYTGIAAGEQERLQLALKVLREGGIYTPSLREIESYD 373 (847)
T ss_pred HHHHHHHHHHHhh-cceEEEECCCcchHHHHHHHHH--hCCCCcccccChHHhhhhhHHHHHhhcCCCCCCCHHHHHhCC
Confidence 5677778888777 3666666665544444444444 343322110 0 000 0 00111234568
Q ss_pred EEEEEeCC-CC-cHHHHHHHHHHHHcCCeEEEEeC
Q 019775 104 ILVMFSKS-GN-TEELLKVVPCAKAKGAYLVSVTS 136 (336)
Q Consensus 104 lvi~iS~s-G~-~~~~~~~~~~ak~~g~~vi~IT~ 136 (336)
++|++... .. .+.....++.++++|+++|+|-.
T Consensus 374 ~Ilv~G~N~~~~~p~~~~~i~~a~~~gaklividp 408 (847)
T PRK08166 374 AVLVLGEDLTQTAARVALAVRQAVKGKAREMAAAQ 408 (847)
T ss_pred EEEEEeCChHHhhHHHHHHHHHHHHcCCceEeecc
Confidence 88888644 33 34455556788889998876554
No 476
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=52.68 E-value=1e+02 Score=28.77 Aligned_cols=39 Identities=21% Similarity=0.201 Sum_probs=27.5
Q ss_pred CCCCcEEEEEeCCC-C-cHHHHHHHHHHHHcCCeEEEEeCC
Q 019775 99 LSSDDILVMFSKSG-N-TEELLKVVPCAKAKGAYLVSVTSV 137 (336)
Q Consensus 99 ~~~~dlvi~iS~sG-~-~~~~~~~~~~ak~~g~~vi~IT~~ 137 (336)
+..-|++|++.... + .+-....++.++++|+++|.|...
T Consensus 150 i~~ad~il~~G~n~~~~~p~~~~~l~~a~~~g~k~i~idp~ 190 (414)
T cd02772 150 ISELDRVLVIGSNLRKEHPLLAQRLRQAVKKGAKLSAINPA 190 (414)
T ss_pred HHhCCEEEEECCCccccchHHHHHHHHHHHcCCEEEEEeCc
Confidence 45578888885443 2 334555578889999999999875
No 477
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=52.63 E-value=1.3e+02 Score=26.02 Aligned_cols=33 Identities=15% Similarity=0.372 Sum_probs=26.3
Q ss_pred CeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCcc
Q 019775 55 GTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLD 90 (336)
Q Consensus 55 ~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~ 90 (336)
.++++||.|. +|..++.....+|+.|.++.+..
T Consensus 101 ~~L~IfGaG~---va~~la~la~~lGf~V~v~D~R~ 133 (246)
T TIGR02964 101 PHVVLFGAGH---VGRALVRALAPLPCRVTWVDSRE 133 (246)
T ss_pred CEEEEECCcH---HHHHHHHHHhcCCCEEEEEeCCc
Confidence 5999999775 57777777888999999877543
No 478
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=52.15 E-value=97 Score=23.12 Aligned_cols=98 Identities=16% Similarity=0.171 Sum_probs=52.2
Q ss_pred HHHHHHHHHHc-CCCeEEEEeccchH--HHHHHHHHHHHhcCCeeeecCCccccccc---------------cCCCCCCc
Q 019775 42 HTLTFTQTLLK-CRGTIFFTGVGKSG--FVANKISQTLISLGIKSGFLNPLDALHGD---------------IGILSSDD 103 (336)
Q Consensus 42 ~i~~~~~~i~~-a~~~I~i~G~G~s~--~~a~~~~~~l~~~g~~~~~~~~~~~~~~~---------------~~~~~~~d 103 (336)
.+..+...+.. ..+.++++|...+. .++..+...+...+..+..+......... ......+-
T Consensus 6 ~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (151)
T cd00009 6 AIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKP 85 (151)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCC
Confidence 34455555544 22589999874433 67777777776556666665432111000 11122334
Q ss_pred EEEEEeCCCC-----cHHHHHHHHHHHH-----cCCeEEEEeCCCC
Q 019775 104 ILVMFSKSGN-----TEELLKVVPCAKA-----KGAYLVSVTSVEG 139 (336)
Q Consensus 104 lvi~iS~sG~-----~~~~~~~~~~ak~-----~g~~vi~IT~~~~ 139 (336)
.++++..-.. .......++.... .++.+|++|+...
T Consensus 86 ~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 86 GVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred eEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 5666665542 2344555555442 5778888777654
No 479
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=52.00 E-value=72 Score=27.25 Aligned_cols=66 Identities=11% Similarity=-0.053 Sum_probs=42.4
Q ss_pred EEEEeccchHHHHHHHHHHHHhcCCeeeecCC-ccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHH
Q 019775 57 IFFTGVGKSGFVANKISQTLISLGIKSGFLNP-LDALHGDIGILSSDDILVMFSKSGNTEELLKVVPC 123 (336)
Q Consensus 57 I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~-~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ 123 (336)
+.+.+++ ...+-..++..-...|..+....+ ...-+...+.+..+++.|.+|.+|.++...+.++.
T Consensus 88 LViaATd-D~~vN~~I~~~a~~~~~lvn~vd~p~~~dFi~PAiv~rg~l~IaIST~G~sP~lar~lR~ 154 (223)
T PRK05562 88 LIVIATD-DEKLNNKIRKHCDRLYKLYIDCSDYKKGLCIIPYQRSTKNFVFALNTKGGSPKTSVFIGE 154 (223)
T ss_pred EEEECCC-CHHHHHHHHHHHHHcCCeEEEcCCcccCeEEeeeEEecCCEEEEEECCCcCcHHHHHHHH
Confidence 4444444 445555555555666777776653 22233334457889999999999999987766653
No 480
>PLN02361 alpha-amylase
Probab=51.89 E-value=35 Score=32.07 Aligned_cols=77 Identities=14% Similarity=0.138 Sum_probs=55.0
Q ss_pred CeEEEEeccch-------HHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHc
Q 019775 55 GTIFFTGVGKS-------GFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAK 127 (336)
Q Consensus 55 ~~I~i~G~G~s-------~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~ 127 (336)
+.|.+-|+-.. ..+.+.+ ..|..+|+..+.+++........ -..+.|..=+=+.-|...+..++++.|+++
T Consensus 11 ~~v~lQ~F~W~~~~~~~w~~i~~kl-~~l~~lG~t~iwl~P~~~~~~~~-GY~~~d~y~~~~~~Gt~~el~~li~~~h~~ 88 (401)
T PLN02361 11 REILLQAFNWESHKHDWWRNLEGKV-PDLAKSGFTSAWLPPPSQSLAPE-GYLPQNLYSLNSAYGSEHLLKSLLRKMKQY 88 (401)
T ss_pred CcEEEEEEeccCCccHHHHHHHHHH-HHHHHcCCCEEEeCCCCcCCCCC-CCCcccccccCcccCCHHHHHHHHHHHHHc
Confidence 57888888543 2455554 46888999999988754432221 234555555558889999999999999999
Q ss_pred CCeEEE
Q 019775 128 GAYLVS 133 (336)
Q Consensus 128 g~~vi~ 133 (336)
|+++|+
T Consensus 89 gi~vi~ 94 (401)
T PLN02361 89 NVRAMA 94 (401)
T ss_pred CCEEEE
Confidence 999884
No 481
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=51.81 E-value=98 Score=25.61 Aligned_cols=65 Identities=23% Similarity=0.299 Sum_probs=41.3
Q ss_pred EeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHH---------HHHHHHHHHHcCCe
Q 019775 60 TGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEE---------LLKVVPCAKAKGAY 130 (336)
Q Consensus 60 ~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~---------~~~~~~~ak~~g~~ 130 (336)
+|.|....++ ..|.+.|..+..+..... +.+-|.+|+ .-+|...+ ..+.++.+.++|.+
T Consensus 6 ~g~~~~~~~~----~~l~~~g~~v~v~~~~~~-------l~~~d~iii-pG~~~~~~~~~~~~~~~~~~~i~~~~~~~~p 73 (198)
T cd01748 6 YGMGNLRSVA----NALERLGAEVIITSDPEE-------ILSADKLIL-PGVGAFGDAMANLRERGLIEALKEAIASGKP 73 (198)
T ss_pred CCCChHHHHH----HHHHHCCCeEEEEcChHH-------hccCCEEEE-CCCCcHHHHHHHHHHcChHHHHHHHHHCCCc
Confidence 4555555554 556678988888774332 234466555 55555432 35667777778999
Q ss_pred EEEEeC
Q 019775 131 LVSVTS 136 (336)
Q Consensus 131 vi~IT~ 136 (336)
+++|+.
T Consensus 74 ilGiC~ 79 (198)
T cd01748 74 FLGICL 79 (198)
T ss_pred EEEECH
Confidence 999985
No 482
>PRK09330 cell division protein FtsZ; Validated
Probab=51.79 E-value=1.2e+02 Score=28.32 Aligned_cols=58 Identities=22% Similarity=0.267 Sum_probs=38.0
Q ss_pred CCCCcEEEEE-eCCCCc--HHHHHHHHHHHHcCCeEEEEeCCCCC---------------ccccccCEEEEcCCCc
Q 019775 99 LSSDDILVMF-SKSGNT--EELLKVVPCAKAKGAYLVSVTSVEGN---------------ALAAVCDMNVHLPVER 156 (336)
Q Consensus 99 ~~~~dlvi~i-S~sG~~--~~~~~~~~~ak~~g~~vi~IT~~~~s---------------~l~~~ad~~i~~~~~~ 156 (336)
++.-|+++++ +..|-| .-.--+++.+|+.|+.+++|-..+.. .|.+++|.+|.++...
T Consensus 95 l~~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~ 170 (384)
T PRK09330 95 LEGADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDK 170 (384)
T ss_pred HcCCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEEEEecHH
Confidence 4455666555 444443 12224568999999998877665432 3778899999987754
No 483
>PRK05939 hypothetical protein; Provisional
Probab=51.75 E-value=1.4e+02 Score=28.04 Aligned_cols=57 Identities=12% Similarity=0.272 Sum_probs=31.1
Q ss_pred HHhcCCeeeecCCccccccccCCCCCCcEEEEEeC----CCCcHHHHHHHHHHHHcCCeEEE
Q 019775 76 LISLGIKSGFLNPLDALHGDIGILSSDDILVMFSK----SGNTEELLKVVPCAKAKGAYLVS 133 (336)
Q Consensus 76 l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~----sG~~~~~~~~~~~ak~~g~~vi~ 133 (336)
+.+.|..+..++.. ........++++.-+|++.. .|...++.++++.|+++|+.+|+
T Consensus 106 l~~~G~~v~~v~~~-d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~liv 166 (397)
T PRK05939 106 LRGLGVEVTMVDAT-DVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVV 166 (397)
T ss_pred HHhcCCEEEEECCC-CHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEE
Confidence 34455555555421 11111122444444455543 34557788889999999986653
No 484
>PRK08114 cystathionine beta-lyase; Provisional
Probab=51.43 E-value=2.1e+02 Score=26.81 Aligned_cols=78 Identities=15% Similarity=0.300 Sum_probs=44.0
Q ss_pred HHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCc----HHHHHHHHHHHHcC--CeEEEEeCCC------CCc
Q 019775 74 QTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNT----EELLKVVPCAKAKG--AYLVSVTSVE------GNA 141 (336)
Q Consensus 74 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~----~~~~~~~~~ak~~g--~~vi~IT~~~------~s~ 141 (336)
..+.+.|..+..++..+. ......++++.-+|.+....+. .++-++++.||++| +.++ .++. -.|
T Consensus 120 ~~l~~~Gi~v~~vd~~d~-~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lv--VDnT~a~p~~~~p 196 (395)
T PRK08114 120 KILSKLGVTTTWFDPLIG-ADIAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIM--IDNTWAAGVLFKA 196 (395)
T ss_pred HHHHhcCcEEEEECCCCH-HHHHHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEE--EECCCccccccCH
Confidence 345566887777653221 1112234555556666554443 67888899999986 5443 3333 334
Q ss_pred cccccCEEEEcCC
Q 019775 142 LAAVCDMNVHLPV 154 (336)
Q Consensus 142 l~~~ad~~i~~~~ 154 (336)
+.--||+++...+
T Consensus 197 l~~GaDivv~S~t 209 (395)
T PRK08114 197 LDFGIDISIQAGT 209 (395)
T ss_pred HHcCCcEEEEcCc
Confidence 4444898886544
No 485
>PRK05402 glycogen branching enzyme; Provisional
Probab=51.41 E-value=51 Score=33.68 Aligned_cols=70 Identities=13% Similarity=0.069 Sum_probs=48.8
Q ss_pred chHHHHHHHHHHHHhcCCeeeecCCcccccccc-CCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEE
Q 019775 64 KSGFVANKISQTLISLGIKSGFLNPLDALHGDI-GILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVS 133 (336)
Q Consensus 64 ~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~-~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~ 133 (336)
+=..++..+...|..+|++++.+.+........ --.+..|..-+=+.-|...+..++++.|+++|++||+
T Consensus 263 ~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~Vil 333 (726)
T PRK05402 263 SYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVIL 333 (726)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 334666676678899999999888764422110 0123344444446778889999999999999999884
No 486
>PRK13413 mpi multiple promoter invertase; Provisional
Probab=51.20 E-value=40 Score=28.06 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=30.0
Q ss_pred CCCCCcEEEEEeCCC---CcHHHHHHHHHHHHcCCeEEEEeC
Q 019775 98 ILSSDDILVMFSKSG---NTEELLKVVPCAKAKGAYLVSVTS 136 (336)
Q Consensus 98 ~~~~~dlvi~iS~sG---~~~~~~~~~~~ak~~g~~vi~IT~ 136 (336)
.+.++|++++.+.++ +..++...++.++++|+.+++++.
T Consensus 58 ~~~~gd~lvv~~ldRl~R~~~d~~~~~~~l~~~gv~l~~~~~ 99 (200)
T PRK13413 58 KMRKGDILIVSELSRLGRNLMEIMSILNICMEKEVIVYTIKE 99 (200)
T ss_pred HHhCCCEEEEEeCchhcCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 345678888887754 446667778889999999999984
No 487
>TIGR00168 infC translation initiation factor IF-3. render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression
Probab=51.13 E-value=26 Score=28.38 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=35.2
Q ss_pred EEEEEeCCCCcH---HHHHHHHHHHHcCCeEEEEeCCCCCccccccCE
Q 019775 104 ILVMFSKSGNTE---ELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDM 148 (336)
Q Consensus 104 lvi~iS~sG~~~---~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~ 148 (336)
-|-++...|..- ...++++.|++.|...|.|..+...|+++..|+
T Consensus 9 ~Vrli~~dG~~lgv~~~~eAl~~A~~~~lDLVev~~~a~PPVckImdy 56 (165)
T TIGR00168 9 EVRLIDENGEQLGIVSREEALEIAEEAGLDLVLISPNAKPPVCKIMDY 56 (165)
T ss_pred EEEEECCCCcCCCcccHHHHHHHHHHcCCcEEEECCCCCCCEEEEeeH
Confidence 455567777643 378899999999999999999888888776554
No 488
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.08 E-value=84 Score=29.78 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=14.9
Q ss_pred CeEEEEeccchHHHHHHH
Q 019775 55 GTIFFTGVGKSGFVANKI 72 (336)
Q Consensus 55 ~~I~i~G~G~s~~~a~~~ 72 (336)
++|+|+|.|.|...|..+
T Consensus 8 ~~v~viG~G~sG~s~~~~ 25 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKH 25 (438)
T ss_pred ceEEEEeccHHHHHHHHH
Confidence 489999999998777665
No 489
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=50.91 E-value=85 Score=22.05 Aligned_cols=64 Identities=28% Similarity=0.379 Sum_probs=37.8
Q ss_pred eccchHHHHHHHHHHHHhcCCeeeecC-CccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHc--CCeEEEEeCC
Q 019775 61 GVGKSGFVANKISQTLISLGIKSGFLN-PLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAK--GAYLVSVTSV 137 (336)
Q Consensus 61 G~G~s~~~a~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~--g~~vi~IT~~ 137 (336)
|.|+|..++.-+...|...+....... +..... ++.|++| |.. ++.+.++.. +++++.|.+-
T Consensus 10 G~gtS~ml~~ki~~~~~~~~~~~~v~~~~~~~~~------~~~Dlii--tt~-------~l~~~~~~~~~~~~vi~v~~~ 74 (87)
T cd05567 10 GMGSSAMGASVLRKKLKKAGLEIPVTNSAIDELP------SDADLVV--THA-------SLTDRAKKKAPQAQHLSVDNF 74 (87)
T ss_pred CccHHHHHHHHHHHHHHHCCCceEEEEcchhhCC------CCCCEEE--ECh-------HHHHHHHhcCCCCeEEEEecc
Confidence 455677888889999998888765543 222221 3456544 322 222333333 6899998875
Q ss_pred CC
Q 019775 138 EG 139 (336)
Q Consensus 138 ~~ 139 (336)
-+
T Consensus 75 l~ 76 (87)
T cd05567 75 LN 76 (87)
T ss_pred CC
Confidence 43
No 490
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=50.89 E-value=45 Score=28.03 Aligned_cols=50 Identities=10% Similarity=0.020 Sum_probs=40.0
Q ss_pred CChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCC
Q 019775 38 LSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNP 88 (336)
Q Consensus 38 ~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~ 88 (336)
++...++++.+.+.++ +-+.++|+..+-..|..+.....+.|.+++.++.
T Consensus 141 lp~~~~~~a~~~~~~a-DlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~ 190 (206)
T cd01410 141 LPPENWMGAAAAACRA-DLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNL 190 (206)
T ss_pred CCHHHHHHHHHHHhcC-CEEEEECcCceehhHHHHHHHHHhcCCeEEEECC
Confidence 3445688999999999 6999999987777777777777778999988874
No 491
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=50.87 E-value=2e+02 Score=27.49 Aligned_cols=111 Identities=11% Similarity=0.064 Sum_probs=58.0
Q ss_pred hcCChhHHHHHHHHHHcCCCeEEEEeccchH--------HHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEE
Q 019775 36 QHLSLPHTLTFTQTLLKCRGTIFFTGVGKSG--------FVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVM 107 (336)
Q Consensus 36 ~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~--------~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~ 107 (336)
.-++.+.+.++++.+.++++.+.++|.|... .....+......+|++-- ..... ...-..+++
T Consensus 269 ~Gv~~~~I~~~A~~~a~a~~~~i~~g~g~~~~~~g~~~~~a~~~L~~l~G~~g~~Gg------g~~~~---~g~ik~~~~ 339 (461)
T cd02750 269 TGVPRETVIRLAREFATNGRSMIIVGAGINHWYHGDLCYRALILLLALTGNEGKNGG------GWAHY---VGQPRVLFV 339 (461)
T ss_pred HCcCHHHHHHHHHHHHhcCCcEEEeCCCcccccCchHHHHHHHHHHHHhCCCCCCCC------ccccC---CCCceEEEE
Confidence 3467788999999999875567778877642 111122222222333211 11000 011133333
Q ss_pred EeCCCCc----HHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775 108 FSKSGNT----EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE 157 (336)
Q Consensus 108 iS~sG~~----~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~ 157 (336)
. .++. ++..+..+.+-.+.+..++..+...+.-+.+||++|...+.-|
T Consensus 340 ~--g~Np~~~~p~~~~~~~~a~~~~ldf~V~~d~~~teTa~~ADvVLP~~~~~E 391 (461)
T cd02750 340 W--RGNLFGSSGKGHEYFEDAPEGKLDLIVDLDFRMDSTALYSDIVLPAATWYE 391 (461)
T ss_pred e--CCChHhhCcCHhHHHHhhhhccCCEEEEEecCCCcccccCcEEEecCCCcc
Confidence 3 3321 2222332122223466666666677888999999988876555
No 492
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=50.61 E-value=92 Score=29.21 Aligned_cols=110 Identities=20% Similarity=0.116 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHH-----------------------HHHHhcCCeeeecCCccccccccC
Q 019775 41 PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKIS-----------------------QTLISLGIKSGFLNPLDALHGDIG 97 (336)
Q Consensus 41 ~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~-----------------------~~l~~~g~~~~~~~~~~~~~~~~~ 97 (336)
+.+++.+..+..+ +..++++.|.+...+-... ..+.+.|..+.+++.. .......
T Consensus 73 ~~le~~lA~l~g~-~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~-d~~~l~~ 150 (403)
T PRK07810 73 SMFEERLRLIEGA-EACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGE-DLSQWEE 150 (403)
T ss_pred HHHHHHHHHHhCC-CcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECCC-CHHHHHH
Confidence 5677777777777 4788888888775432211 1122335555554321 1111112
Q ss_pred CCCCCcEEEEEe----CCCCcHHHHHHHHHHHHcCCeEEEE----eCCCCCccccccCEEEEc
Q 019775 98 ILSSDDILVMFS----KSGNTEELLKVVPCAKAKGAYLVSV----TSVEGNALAAVCDMNVHL 152 (336)
Q Consensus 98 ~~~~~dlvi~iS----~sG~~~~~~~~~~~ak~~g~~vi~I----T~~~~s~l~~~ad~~i~~ 152 (336)
.++++.-+|++. ..|...++-++.+.|+++|+.+|.= +.....++.--+|+++..
T Consensus 151 ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~~~~~gaDivv~S 213 (403)
T PRK07810 151 ALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRGLPLGADVVVYS 213 (403)
T ss_pred hcCcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCccccCChhhcCCcEEEcc
Confidence 234433334432 3455667888999999999876631 111223444457877654
No 493
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=50.59 E-value=29 Score=29.62 Aligned_cols=53 Identities=17% Similarity=0.260 Sum_probs=40.9
Q ss_pred CCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEc
Q 019775 98 ILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHL 152 (336)
Q Consensus 98 ~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~ 152 (336)
.+.+-|++|++-.|........+++.++ +|+++|.|-. ..+++...+|+.+.-
T Consensus 168 ~~~~~DlllviGTSl~v~p~~~l~~~~~-~~~~~i~iN~-~~~~~~~~~~~~~~~ 220 (225)
T cd01411 168 AIEKADLLVIVGTSFVVYPFAGLIDYRQ-AGANLIAINK-EPTQLDSPATLVIKD 220 (225)
T ss_pred HHhcCCEEEEECcCCeehhHHHHHHHHh-CCCeEEEECC-CCCCCCcchhehhcc
Confidence 3566789999988888877778887775 7999988865 577777778877665
No 494
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=50.28 E-value=49 Score=32.67 Aligned_cols=73 Identities=11% Similarity=-0.009 Sum_probs=47.8
Q ss_pred ChhHHHHHHHHHHcCCCeEEEEeccchH-HHHHHHHHHHHhcCCeeeecCCcc-------cccc---ccCCCCCCcEEEE
Q 019775 39 SLPHTLTFTQTLLKCRGTIFFTGVGKSG-FVANKISQTLISLGIKSGFLNPLD-------ALHG---DIGILSSDDILVM 107 (336)
Q Consensus 39 ~~~~i~~~~~~i~~a~~~I~i~G~G~s~-~~a~~~~~~l~~~g~~~~~~~~~~-------~~~~---~~~~~~~~dlvi~ 107 (336)
+.+.+++++++|.+|++-+++.|.|... .....+.....++|.++..-..+. .+.. ....+.+-|++|+
T Consensus 206 ~~~~~~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~~~~hp~~~G~~~~~~~~~aDlvl~ 285 (569)
T PRK08327 206 DPEDIARAAEMLAAAERPVIITWRAGRTAEGFASLRRLAEELAIPVVEYAGEVVNYPSDHPLHLGPDPRADLAEADLVLV 285 (569)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecccCCcccHHHHHHHHHHhCCCEEecCCCceeCCCCCccccccccchhhhhCCEEEE
Confidence 5678999999999997677778888743 456666666677888887533211 1100 0123467788888
Q ss_pred EeCC
Q 019775 108 FSKS 111 (336)
Q Consensus 108 iS~s 111 (336)
+-.+
T Consensus 286 lG~~ 289 (569)
T PRK08327 286 VDSD 289 (569)
T ss_pred eCCC
Confidence 8654
No 495
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=50.00 E-value=50 Score=27.43 Aligned_cols=65 Identities=17% Similarity=0.204 Sum_probs=40.9
Q ss_pred EeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHH------HHHHHHHcCCeEEE
Q 019775 60 TGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLK------VVPCAKAKGAYLVS 133 (336)
Q Consensus 60 ~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~------~~~~ak~~g~~vi~ 133 (336)
+|.|....++. .|.++|..+..+.+.+.+ .+-|.+| +.-+|.+.+..+ +.+.+++.|.+++.
T Consensus 8 ~g~gn~~s~~~----~l~~~g~~~~~v~~~~~~-------~~~d~iI-lPG~G~~~~~~~~l~~~~l~~~i~~~~~PilG 75 (196)
T PRK13170 8 TGCANLSSVKF----AIERLGYEPVVSRDPDVI-------LAADKLF-LPGVGTAQAAMDQLRERELIDLIKACTQPVLG 75 (196)
T ss_pred CCCchHHHHHH----HHHHCCCeEEEECCHHHh-------CCCCEEE-ECCCCchHHHHHHHHHcChHHHHHHcCCCEEE
Confidence 34555555544 666789988888755432 1235444 566677666533 45677778888888
Q ss_pred EeC
Q 019775 134 VTS 136 (336)
Q Consensus 134 IT~ 136 (336)
|+-
T Consensus 76 ICl 78 (196)
T PRK13170 76 ICL 78 (196)
T ss_pred ECH
Confidence 874
No 496
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=49.65 E-value=52 Score=32.47 Aligned_cols=72 Identities=15% Similarity=0.135 Sum_probs=45.3
Q ss_pred ChhHHHHHHHHHHcCCCeEEEEeccchH-HHHHHHHHHHHhcCCeeeecCCcccccccc----------CCCCCCcEEEE
Q 019775 39 SLPHTLTFTQTLLKCRGTIFFTGVGKSG-FVANKISQTLISLGIKSGFLNPLDALHGDI----------GILSSDDILVM 107 (336)
Q Consensus 39 ~~~~i~~~~~~i~~a~~~I~i~G~G~s~-~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~----------~~~~~~dlvi~ 107 (336)
+.+.+++++++|.+|++-+++.|.|.-. .....+.....++|.++.....+....... ..+.+-|++|+
T Consensus 199 ~~~~l~~~~~~L~~AkrPvIi~G~g~~~~~a~~~l~~lae~l~iPV~tt~~gkg~~~e~hpl~~G~~~~~~l~~aDlvl~ 278 (569)
T PRK09259 199 APEAVDRALDLLKKAKRPLIILGKGAAYAQADEQIREFVEKTGIPFLPMSMAKGLLPDTHPQSAAAARSLALANADVVLL 278 (569)
T ss_pred CHHHHHHHHHHHHhCCCCEEEECcCccccChHHHHHHHHHHHCCCEEecccccccCCCCChhhhhHHHHHHHhcCCEEEE
Confidence 4578999999999997677777877643 344555444456788887644222211100 12567788888
Q ss_pred EeC
Q 019775 108 FSK 110 (336)
Q Consensus 108 iS~ 110 (336)
+-.
T Consensus 279 lG~ 281 (569)
T PRK09259 279 VGA 281 (569)
T ss_pred eCC
Confidence 753
No 497
>PRK04296 thymidine kinase; Provisional
Probab=49.57 E-value=1.5e+02 Score=24.42 Aligned_cols=52 Identities=13% Similarity=0.104 Sum_probs=33.8
Q ss_pred EEEEeCCCCc-HH-HHHHHHHHHHcCCeEEEEeCC---------CCCccccccCEEEEcCCCc
Q 019775 105 LVMFSKSGNT-EE-LLKVVPCAKAKGAYLVSVTSV---------EGNALAAVCDMNVHLPVER 156 (336)
Q Consensus 105 vi~iS~sG~~-~~-~~~~~~~ak~~g~~vi~IT~~---------~~s~l~~~ad~~i~~~~~~ 156 (336)
+|++.--+.- .+ +.++++.++..|..+|...-. ....+..+||.+..+..-.
T Consensus 81 vviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~vC 143 (190)
T PRK04296 81 CVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELKAIC 143 (190)
T ss_pred EEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEeeEEc
Confidence 4555544442 33 788888889898888776554 2346677788887665443
No 498
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=49.38 E-value=54 Score=31.95 Aligned_cols=118 Identities=13% Similarity=0.108 Sum_probs=60.7
Q ss_pred CChhHHHHHHHHHHcCCCeEEEEeccchH-------HHHHHHHHHHHhcCCeeeecCCc--c------ccccccCCCCCC
Q 019775 38 LSLPHTLTFTQTLLKCRGTIFFTGVGKSG-------FVANKISQTLISLGIKSGFLNPL--D------ALHGDIGILSSD 102 (336)
Q Consensus 38 ~~~~~i~~~~~~i~~a~~~I~i~G~G~s~-------~~a~~~~~~l~~~g~~~~~~~~~--~------~~~~~~~~~~~~ 102 (336)
++.+.|+++++.+.++++.+.+.|.|... ..+..+...+..+|+......+. . ........+.++
T Consensus 303 v~~~~I~~lA~~~a~~~~~~i~~G~g~~~~~g~~~~~ai~~L~altG~~g~~~~~~~~~~~~~~~~~~~~~~l~~~i~~g 382 (524)
T cd02764 303 DLDKALAALAKALAAAGKSLVVAGSELSQTAGADTQVAVNALNSLLGNDGKTVDHARPIKGGELGNQQDLKALASRINAG 382 (524)
T ss_pred chHHHHHHHHHHHHhcCCcEEEECCCCCccccHHHHHHHHHHHHHhCCCCccccCCCCcccccccchHHHHHHHHHHHcC
Confidence 46789999999998874467777887654 12222333333345443221110 0 000000011122
Q ss_pred --cEEEEEeCCC--CcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775 103 --DILVMFSKSG--NTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE 157 (336)
Q Consensus 103 --dlvi~iS~sG--~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~ 157 (336)
..+++..... ..++..+..+.++ .+..+++.+...++-+.+||++|...+.-|
T Consensus 383 ~ik~l~v~~~Np~~~~p~~~~~~~al~--k~df~Vv~d~~~teTa~~ADvVLPaat~~E 439 (524)
T cd02764 383 KVSALLVYDVNPVYDLPQGLGFAKALE--KVPLSVSFGDRLDETAMLCDWVAPMSHGLE 439 (524)
T ss_pred CccEEEEeCCCccccCCCcHHHHHHHh--cCCeEEEecCCCChhHHhcCEeccCCCccc
Confidence 2344333221 1133333334443 355666666777888899999988766544
No 499
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=49.24 E-value=77 Score=26.61 Aligned_cols=67 Identities=9% Similarity=0.176 Sum_probs=45.1
Q ss_pred eEEEEeccchHHHHHHHHHHHHhcCCeeeecCCcc-ccccccCCCCCCcEEEEEeCCCCcHHHHHHHHH
Q 019775 56 TIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLD-ALHGDIGILSSDDILVMFSKSGNTEELLKVVPC 123 (336)
Q Consensus 56 ~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~-~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ 123 (336)
.+.+.++|... +-..+...-...|+.+....+.. .-+.....+..+++.|.+|.+|.++.+-+.++.
T Consensus 71 ~lVi~at~d~~-ln~~i~~~a~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iaisT~G~sP~la~~lr~ 138 (205)
T TIGR01470 71 FLVIAATDDEE-LNRRVAHAARARGVPVNVVDDPELCSFIFPSIVDRSPVVVAISSGGAAPVLARLLRE 138 (205)
T ss_pred EEEEECCCCHH-HHHHHHHHHHHcCCEEEECCCcccCeEEEeeEEEcCCEEEEEECCCCCcHHHHHHHH
Confidence 56667777653 33344555567788887766433 223334567889999999999999987776653
No 500
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=49.23 E-value=12 Score=32.57 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=46.5
Q ss_pred ccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCC
Q 019775 95 DIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPV 154 (336)
Q Consensus 95 ~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~ 154 (336)
....+..-|++|++-.||...-...+...++++|++++.|-. ..+++.+.+|..+.-.+
T Consensus 176 ~~~~~~~~d~liviGTSl~V~Paa~~p~~~~~~g~~~i~iN~-~~~~~~~~~d~~i~~~a 234 (250)
T COG0846 176 ALEALKEADLLIVIGTSLKVYPAAGLPELAKRRGAKVIEINL-EPTRLDPIADEVIRGDA 234 (250)
T ss_pred HHHHhccCCEEEEECcceEEcChhhhhHHHHhcCCEEEEECC-CcccCcchhHHHHHhhH
Confidence 344568899999999999987777766679999999999876 57777777777665433
Done!