Query 019776
Match_columns 336
No_of_seqs 202 out of 423
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 06:55:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019776.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019776hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3cx5h1 f.23.13.1 (H:2-94) Ubi 9.0 80 0.0058 23.2 2.2 18 186-203 51-68 (93)
2 d2gmqa1 b.122.1.11 (A:12-113) 7.7 34 0.0025 25.3 -0.4 10 250-259 91-100 (102)
3 d1uowa_ b.7.1.2 (A:) Synaptoga 7.1 77 0.0056 23.9 1.4 22 31-53 121-144 (157)
4 d1ppjg_ f.23.13.1 (G:) Ubiquin 6.7 1.3E+02 0.0093 21.2 2.4 29 176-204 31-59 (75)
5 d1t07a_ d.279.1.1 (A:) Hypothe 6.5 63 0.0046 23.2 0.6 8 60-67 18-25 (81)
6 d1zgha2 c.65.1.1 (A:1-164) Met 6.3 57 0.0042 25.5 0.3 16 249-269 78-93 (164)
7 d1dqva2 b.7.1.2 (A:425-569) Sy 5.9 86 0.0063 23.0 1.1 22 32-53 117-140 (145)
8 d1u19a_ f.13.1.2 (A:) Rhodopsi 5.8 1.7E+02 0.013 23.3 3.2 25 213-237 246-270 (348)
9 d1w15a_ b.7.1.2 (A:) Synaptota 5.3 1.1E+02 0.0082 22.2 1.4 19 35-53 114-134 (138)
10 d1xs8a_ d.279.1.1 (A:) Hypothe 4.8 93 0.0067 22.8 0.6 8 60-67 16-23 (91)
No 1
>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.00 E-value=80 Score=23.25 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=14.9
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 019776 186 FKHLFAVAAPVYFVYLLR 203 (336)
Q Consensus 186 fKhm~LY~APa~FvyLL~ 203 (336)
+|+..+|++|++.+..+-
T Consensus 51 ~r~q~lyv~PPfi~~Y~i 68 (93)
T d3cx5h1 51 FKSQFLYVLIPAGIYWYW 68 (93)
T ss_dssp HHTTHHHHHHHHHHHHHH
T ss_pred hhhhceEEcchHHHHHHH
Confidence 688999999998877644
No 2
>d2gmqa1 b.122.1.11 (A:12-113) Uncharacterized protein PrgU {Enterococcus faecalis [TaxId: 1351]}
Probab=7.69 E-value=34 Score=25.31 Aligned_cols=10 Identities=30% Similarity=0.700 Sum_probs=7.9
Q ss_pred cCCCccchhh
Q 019776 250 PFGRGLCHAY 259 (336)
Q Consensus 250 Pf~RGL~hay 259 (336)
|.+||.+|||
T Consensus 91 ~I~R~~~~~~ 100 (102)
T d2gmqa1 91 PINRGVFEEI 100 (102)
T ss_dssp CCBHHHHHHH
T ss_pred ccchhhhHhh
Confidence 7788888887
No 3
>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.07 E-value=77 Score=23.87 Aligned_cols=22 Identities=32% Similarity=0.738 Sum_probs=16.0
Q ss_pred cchHHhhHHHHHhcc--CCcccccc
Q 019776 31 TDFEVHRHWLALTHS--LPLSNWYA 53 (336)
Q Consensus 31 tDfEvhRnWmaiT~~--LPls~WY~ 53 (336)
.+-| .+||.++..+ .|+.+||.
T Consensus 121 ~~~~-~~hW~~~~~~~~~~v~~Wh~ 144 (157)
T d1uowa_ 121 TGAE-LRHWSDMLANPRRPIAQWHT 144 (157)
T ss_dssp CHHH-HHHHHHHHHSTTCCEEEEEE
T ss_pred CChh-HHHHHHHHhCCCCceeEeEe
Confidence 3434 6899998665 48889984
No 4
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.74 E-value=1.3e+02 Score=21.16 Aligned_cols=29 Identities=17% Similarity=0.120 Sum_probs=21.3
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 019776 176 GGFLFAVLLCFKHLFAVAAPVYFVYLLRH 204 (336)
Q Consensus 176 ~a~~FalaL~fKhm~LY~APa~FvyLL~~ 204 (336)
+..+|=+.=-+|...+|++|++.+..+--
T Consensus 31 ~~gi~N~~RR~~~~~l~v~PPfi~~Y~iy 59 (75)
T d1ppjg_ 31 SKGIPNVLRRTRACILRVAPPFVAFYLVY 59 (75)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccHHHHHhHHhceEEcCHHHHHHHHH
Confidence 34455666678999999999998766543
No 5
>d1t07a_ d.279.1.1 (A:) Hypothetical protein PA5148 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=6.47 E-value=63 Score=23.24 Aligned_cols=8 Identities=50% Similarity=0.928 Sum_probs=6.2
Q ss_pred cCCCCchh
Q 019776 60 TLDYPPFF 67 (336)
Q Consensus 60 tLDYPPlf 67 (336)
+||+||+=
T Consensus 18 gLd~pP~P 25 (81)
T d1t07a_ 18 GLDRPPYP 25 (81)
T ss_dssp BCSSCSSS
T ss_pred CCCCCCCC
Confidence 68899873
No 6
>d1zgha2 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransferase {Clostridium thermocellum [TaxId: 1515]}
Probab=6.35 E-value=57 Score=25.49 Aligned_cols=16 Identities=38% Similarity=0.569 Sum_probs=13.2
Q ss_pred ccCCCccchhhhcchhHHHHH
Q 019776 249 FPFGRGLCHAYWAPNFWVFYI 269 (336)
Q Consensus 249 FPf~RGL~haywA~NfWaly~ 269 (336)
-|..||. +|.+|++++
T Consensus 78 LP~yRG~-----~p~~wai~~ 93 (164)
T d1zgha2 78 LPFGRGG-----SPLQNLIER 93 (164)
T ss_dssp TTTTEES-----CHHHHHHHT
T ss_pred hhccccc-----ccccccccc
Confidence 5999996 588898876
No 7
>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.91 E-value=86 Score=23.05 Aligned_cols=22 Identities=23% Similarity=0.608 Sum_probs=15.5
Q ss_pred chHHhhHHHHHhcc--CCcccccc
Q 019776 32 DFEVHRHWLALTHS--LPLSNWYA 53 (336)
Q Consensus 32 DfEvhRnWmaiT~~--LPls~WY~ 53 (336)
+-+-.+||.++..+ .|+.+||.
T Consensus 117 ~~~~~~~W~~l~~~p~~~i~~Wh~ 140 (145)
T d1dqva2 117 DPHGREHWAEMLANPRKPVEHWHQ 140 (145)
T ss_dssp CHHHHHHHHTSSSSSSSCSCSCCC
T ss_pred CchhhHHHHHHHhCCCCeeeEeEE
Confidence 34456899987544 38899984
No 8
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.83 E-value=1.7e+02 Score=23.32 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhh
Q 019776 213 GFSRLSVLGAVVVAVFAAAYGPFLY 237 (336)
Q Consensus 213 ~~~rli~Lg~~Vi~tfal~f~PFl~ 237 (336)
+-+|..+..++++++|.++|.|+..
T Consensus 246 ~~~~~~~~~~~i~~~f~~~~~P~~i 270 (348)
T d1u19a_ 246 AEKEVTRMVIIMVIAFLICWLPYAG 270 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHhheEEEeehHHHHHhhHHHh
Confidence 3478999999999999999999753
No 9
>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.32 E-value=1.1e+02 Score=22.20 Aligned_cols=19 Identities=16% Similarity=0.455 Sum_probs=14.1
Q ss_pred HhhHHHHHhcc--CCcccccc
Q 019776 35 VHRHWLALTHS--LPLSNWYA 53 (336)
Q Consensus 35 vhRnWmaiT~~--LPls~WY~ 53 (336)
..+||.++..+ .|+.+||.
T Consensus 114 ~~~hW~~ll~~~~k~i~~Wh~ 134 (138)
T d1w15a_ 114 GGGHWKEICDFPRRQIAKWHM 134 (138)
T ss_dssp HHHHHHHHHHSTTCCEEEEEE
T ss_pred hHHHHHHHHhCCCCeeeECeE
Confidence 45899887543 49999984
No 10
>d1xs8a_ d.279.1.1 (A:) Hypothetical protein YggX {Salmonella typhimurium [TaxId: 90371]}
Probab=4.83 E-value=93 Score=22.77 Aligned_cols=8 Identities=13% Similarity=0.247 Sum_probs=5.9
Q ss_pred cCCCCchh
Q 019776 60 TLDYPPFF 67 (336)
Q Consensus 60 tLDYPPlf 67 (336)
|||+||+=
T Consensus 16 gL~~pP~P 23 (91)
T d1xs8a_ 16 GQDFQLYP 23 (91)
T ss_dssp BCCCCSSC
T ss_pred CCCCCCCC
Confidence 58888874
Done!