BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019778
(336 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/289 (29%), Positives = 131/289 (45%), Gaps = 21/289 (7%)
Query: 42 GFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMKVLRNEK-HRGYTPVLDELLDPDTQV 100
GF + ++ + Q ++ +K FF +P+ K + + RGY P E
Sbjct: 34 GFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPFGVETAKGADHY 93
Query: 101 RGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVAR 160
D KE ++ G ++P G + NVWPA +P ++ + V
Sbjct: 94 --DLKEFWHXGRDLPPG--HRFRAHXADNVWPAE--IPAFKHDVSWLYNSLDGXGGKVLE 147
Query: 161 IIXXXXXXXXXFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATD 220
I FF G ++ LRLLHY I + G+ AGAH D ITLL
Sbjct: 148 AIATYLKLERDFFKPTVQDGNSV--LRLLHYP-PIPKDATGVR-AGAHGDINTITLLLGA 203
Query: 221 EVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLG-----TG 275
E GL++ DRD + W + P G ++N+GD LER +N + ST+HRV+ G
Sbjct: 204 EEGGLEVL-DRDGQ---WLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVVNPPPERRG 259
Query: 276 RERYSIAFFVEPSHDCLVECLPTCKSDKNPPKFP-PIKCETYLSQRYKD 323
RYS FF+ + D ++ L C + +NP ++P I + +L QR ++
Sbjct: 260 VPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITADEFLQQRLRE 308
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/346 (25%), Positives = 153/346 (44%), Gaps = 54/346 (15%)
Query: 6 RSKNGAEAQTV-LNCIDLSSPDIQQS-VSLLKQACLDCGFFYVVNHGISQEFMEEVFSQS 63
+ ++G + T+ L I+ I+++ + LK+A LD G +++NHGI + ME V
Sbjct: 39 KKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAG 98
Query: 64 KRFFKMPLNEKMKVLRNE---KHRGYTPVLDELLDPDTQVRGDYK-EGYYIGVEVPEGDP 119
+ FF + + EK K ++ K +GY L G + E Y+ + PE
Sbjct: 99 EEFFSLSVEEKEKYANDQATGKIQGYGSKL------ANNASGQLEWEDYFFHLAYPEEKR 152
Query: 120 ESEKPFYGPNVWPA--PDCLPGWRETMERFQREALEVAKAVARIIXXXXXXXXXFFDKPE 177
+ ++WP D + E + + A +V KA++ + +P+
Sbjct: 153 DL-------SIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGL----------EPD 195
Query: 178 MLGQAIATLRLLHYEGQIS------DPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDR 231
L + + L L + +I+ P + G AH+D +T + + V GLQ+ +
Sbjct: 196 RLEKEVGGLEELLLQMKINYYPKCPQPELAL-GVEAHTDVSALTFILHNMVPGLQLFYEG 254
Query: 232 DAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHR-VLGTGRERYSIAFFVEPSHD 290
W + + ++++GD LE SN +KS LHR ++ + R S A F EP D
Sbjct: 255 K-----WVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKD 309
Query: 291 CLV-ECLPTCKSDKNPPKFPPIKCETYLSQRYKDTHADLNMYNKQQ 335
+V + LP S ++P KFPP R H + ++ K+Q
Sbjct: 310 KIVLKPLPEMVSVESPAKFPP---------RTFAQHIEHKLFGKEQ 346
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/346 (25%), Positives = 153/346 (44%), Gaps = 54/346 (15%)
Query: 6 RSKNGAEAQTV-LNCIDLSSPDIQQS-VSLLKQACLDCGFFYVVNHGISQEFMEEVFSQS 63
+ ++G + T+ L I+ I+++ + LK+A LD G +++NHGI + ME V
Sbjct: 40 KKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAG 99
Query: 64 KRFFKMPLNEKMKVLRNE---KHRGYTPVLDELLDPDTQVRGDYK-EGYYIGVEVPEGDP 119
+ FF + + EK K ++ K +GY L G + E Y+ + PE
Sbjct: 100 EEFFSLSVEEKEKYANDQATGKIQGYGSKL------ANNASGQLEWEDYFFHLAYPEEKR 153
Query: 120 ESEKPFYGPNVWPA--PDCLPGWRETMERFQREALEVAKAVARIIXXXXXXXXXFFDKPE 177
+ ++WP D + E + + A +V KA++ + +P+
Sbjct: 154 DL-------SIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGL----------EPD 196
Query: 178 MLGQAIATLRLLHYEGQIS------DPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDR 231
L + + L L + +I+ P + G AH+D +T + + V GLQ+ +
Sbjct: 197 RLEKEVGGLEELLLQMKINYYPKCPQPELAL-GVEAHTDVSALTFILHNMVPGLQLFYEG 255
Query: 232 DAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHR-VLGTGRERYSIAFFVEPSHD 290
W + + ++++GD LE SN +KS LHR ++ + R S A F EP D
Sbjct: 256 K-----WVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKD 310
Query: 291 CLV-ECLPTCKSDKNPPKFPPIKCETYLSQRYKDTHADLNMYNKQQ 335
+V + LP S ++P KFPP R H + ++ K+Q
Sbjct: 311 KIVLKPLPEMVSVESPAKFPP---------RTFAQHIEHKLFGKEQ 347
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 125/305 (40%), Gaps = 59/305 (19%)
Query: 34 LKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMK---VLR--NEKHRGYTP 88
+ A D GFFY VNHGI+ + + SQ + F M + + K +R N++H+
Sbjct: 32 IDAASRDTGFFYAVNHGINVQRL----SQKTKEFHMSITPEEKWDLAIRAYNKEHQ---- 83
Query: 89 VLDELLDPDTQVRGDYKEGYYIGVE-----------VPEGDP-----ESEKPFYGPNVWP 132
QVR GYY+ + P P +++ P + NVWP
Sbjct: 84 ---------DQVRA----GYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWP 130
Query: 133 APDCLPGWRETMERFQREALEVAKAVARIIXXXXXXXXXFFDKPEMLGQAIATLRLLHY- 191
PG+++ E++ + ++ A+ + FF + +A++ L+ Y
Sbjct: 131 DETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYP 190
Query: 192 ------EGQISDPSKGM-YGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPM 244
E I + G H D LIT+L V LQ+ ++D+
Sbjct: 191 YLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQV-----ETAAGYQDIEAD 245
Query: 245 KGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVECL----PTCK 300
+++N G + +N +K+ +HRV ER S+ FFV +D +++ P K
Sbjct: 246 DTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAERQSLPFFVNLGYDSVIDPFDPREPNGK 305
Query: 301 SDKNP 305
SD+ P
Sbjct: 306 SDREP 310
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 125/305 (40%), Gaps = 59/305 (19%)
Query: 34 LKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMK---VLR--NEKHRGYTP 88
+ A D GFFY VNHGI+ + + SQ + F M + + K +R N++H+
Sbjct: 32 IDAASRDTGFFYAVNHGINVQRL----SQKTKEFHMSITPEEKWDLAIRAYNKEHQ---- 83
Query: 89 VLDELLDPDTQVRGDYKEGYYIGVE-----------VPEGDP-----ESEKPFYGPNVWP 132
QVR GYY+ + P P +++ P + NVWP
Sbjct: 84 ---------DQVRA----GYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWP 130
Query: 133 APDCLPGWRETMERFQREALEVAKAVARIIXXXXXXXXXFFDKPEMLGQAIATLRLLHY- 191
PG+++ E++ + ++ A+ + FF + +A++ L+ Y
Sbjct: 131 DETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYP 190
Query: 192 ------EGQISDPSKGM-YGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPM 244
E I + G H D LIT+L V LQ+ ++D+
Sbjct: 191 YLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQV-----ETAAGYQDIEAD 245
Query: 245 KGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVECL----PTCK 300
+++N G + +N +K+ +HRV ER S+ FFV +D +++ P K
Sbjct: 246 DTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAERQSLPFFVNLGYDSVIDPFDPREPNGK 305
Query: 301 SDKNP 305
SD+ P
Sbjct: 306 SDREP 310
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 117/286 (40%), Gaps = 39/286 (13%)
Query: 17 LNCIDLSSPDIQQSVSLLKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMK 76
L ID + D S ++ + GF + NH I +E +E ++++ + FF +
Sbjct: 4 LETIDYRAAD---SAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFX 60
Query: 77 VLRNEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDC 136
R E H G+ P V+ D KE Y++ P G PD
Sbjct: 61 FNR-ETHDGFFPASISETAKGHTVK-DIKEYYHV---YPWGR--------------IPDS 101
Query: 137 LPGWRETMERFQREALEVAKAVARIIXXXX---XXXXXFFDKPEMLGQAIATL-RLLHYE 192
L R + + +A +A + I PE + + TL R+LHY
Sbjct: 102 L---RANILAYYEKANTLASELLEWIETYSPDEIKAKFSIPLPEXIANSHKTLLRILHYP 158
Query: 193 GQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNL 252
D G A AH D LIT+L T GLQ+ AK W DV G I+N+
Sbjct: 159 PXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQV----KAKDGSWLDVPSDFGNIIINI 214
Query: 253 GDMLERWSNCIFKSTLHRVL---GT--GRERYSIAFFVEPSHDCLV 293
GD L+ S+ F ST HRV+ GT + R S+ F+ P H +V
Sbjct: 215 GDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHP-HPSVV 259
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 127/293 (43%), Gaps = 41/293 (13%)
Query: 34 LKQACLDCGFFYVVNHGISQEFMEEVFSQSKRFFKMPLNEKMKVLRNEKHRGYTPVLDEL 93
+K AC + GFF +VNHGI +E + V +K +K ++ K L K V E+
Sbjct: 24 IKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKELVASK--ALEGVQAEV 81
Query: 94 LDPDTQVRGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALE 153
D D++ +++ K N+ PD +RE F + +
Sbjct: 82 TD------XDWESTFFL------------KHLPISNISEVPDLDEEYREVXRDFAKRLEK 123
Query: 154 VAKAVARIIXXXXXXXXXFFDKPEMLGQAIATLRLLHYEGQISD----PSKGMY-GAGAH 208
+A+ + ++ + L A + ++ ++S+ P + G AH
Sbjct: 124 LAEELLDLLCENLGLEKGY------LKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAH 177
Query: 209 SDYG-LITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKST 267
+D G +I L D+V+GLQ+ KD W DV P + + +VNLGD LE +N +KS
Sbjct: 178 TDAGGIILLFQDDKVSGLQLLKDGQ-----WIDVPPXRHSIVVNLGDQLEVITNGKYKSV 232
Query: 268 LHRVLGTGR-ERYSIAFFVEPSHDCLVECLPTC---KSDKNPPKFPPIKCETY 316
HRV+ R S+A F P D ++ P ++++N +P + Y
Sbjct: 233 XHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDY 285
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 151/346 (43%), Gaps = 54/346 (15%)
Query: 6 RSKNGAEAQTV-LNCIDLSSPDIQQS-VSLLKQACLDCGFFYVVNHGISQEFMEEVFSQS 63
+ ++G + T+ L I+ I+++ + LK+A LD G +++NHGI + E V
Sbjct: 40 KKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAG 99
Query: 64 KRFFKMPLNEKMKVLRNE---KHRGYTPVLDELLDPDTQVRGDYK-EGYYIGVEVPEGDP 119
+ FF + + EK K ++ K +GY L G + E Y+ + PE
Sbjct: 100 EEFFSLSVEEKEKYANDQATGKIQGYGSKL------ANNASGQLEWEDYFFHLAYPEEKR 153
Query: 120 ESEKPFYGPNVWPA--PDCLPGWRETMERFQREALEVAKAVARIIXXXXXXXXXFFDKPE 177
+ ++WP D + E + + A +V KA++ + +P+
Sbjct: 154 DL-------SIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGL----------EPD 196
Query: 178 MLGQAIATLRLLHYEGQIS------DPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDR 231
L + + L L + +I+ P + G AH+D +T + + V GLQ+ +
Sbjct: 197 RLEKEVGGLEELLLQXKINYYPKCPQPELAL-GVEAHTDVSALTFILHNXVPGLQLFYEG 255
Query: 232 DAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHR-VLGTGRERYSIAFFVEPSHD 290
W + + + ++GD LE SN +KS LHR ++ + R S A F EP D
Sbjct: 256 K-----WVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKD 310
Query: 291 CLV-ECLPTCKSDKNPPKFPPIKCETYLSQRYKDTHADLNMYNKQQ 335
+V + LP S ++P KFPP R H + ++ K+Q
Sbjct: 311 KIVLKPLPEXVSVESPAKFPP---------RTFAQHIEHKLFGKEQ 347
>pdb|4AXV|A Chain A, Biochemical And Structural Characterization Of The Mpaa
Amidase As Part Of A Conserved Scavenging Pathway For
Peptidoglycan Derived Peptides In Gamma-Proteobacteria
Length = 243
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 172 FFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQ 226
F P G+++ LL++ Q+ S+G+ AG H D T +AGL
Sbjct: 19 FLITPTSYGKSVLGAPLLYFPAQVESNSRGLILAGTHGD-------ETASIAGLS 66
>pdb|1WY7|A Chain A, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|B Chain B, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|C Chain C, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|D Chain D, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
Length = 207
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 180 GQAIATLRLLHYE-GQISDPSKGMYGAGAHS-DYGLITLLATDEVAGLQICKDRDAKPQL 237
G A + L L Y G I GAG YG + LL EV +++ D++A L
Sbjct: 32 GNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGAL-LLGAKEVICVEV--DKEAVDVL 88
Query: 238 WEDVAPMKGAFIVNLGDMLE 257
E++ KG F V +GD+ E
Sbjct: 89 IENLGEFKGKFKVFIGDVSE 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,627,199
Number of Sequences: 62578
Number of extensions: 451522
Number of successful extensions: 965
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 935
Number of HSP's gapped (non-prelim): 15
length of query: 336
length of database: 14,973,337
effective HSP length: 99
effective length of query: 237
effective length of database: 8,778,115
effective search space: 2080413255
effective search space used: 2080413255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)