Query 019779
Match_columns 336
No_of_seqs 141 out of 241
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 04:28:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019779.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019779hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03094 Mlo: Mlo family; Int 100.0 1E-138 2E-143 1044.2 24.6 319 1-330 58-381 (478)
2 TIGR03777 RPE4 Rickettsial pal 48.8 7.7 0.00017 26.5 0.6 9 278-286 24-32 (32)
3 PF15468 DUF4636: Domain of un 34.6 22 0.00047 34.2 1.4 39 200-243 25-63 (243)
4 COG3114 CcmD Heme exporter pro 26.3 1.6E+02 0.0034 23.4 4.7 39 230-268 9-56 (67)
5 PF10751 DUF2535: Protein of u 18.2 83 0.0018 25.9 1.8 17 192-208 50-66 (83)
6 PF15444 TMEM247: Transmembran 17.5 1.6E+02 0.0034 27.9 3.6 23 92-114 193-215 (218)
7 PF01956 DUF106: Integral memb 17.3 64 0.0014 28.4 1.0 42 185-228 113-154 (168)
8 smart00153 VHP Villin headpiec 15.9 44 0.00094 23.2 -0.3 12 208-219 4-15 (36)
9 PF08921 DUF1904: Domain of un 15.7 1.3E+02 0.0029 25.5 2.5 12 285-296 58-69 (108)
10 PF09060 L27_N: L27_N; InterP 15.5 1.6E+02 0.0034 22.1 2.5 18 294-311 26-43 (49)
No 1
>PF03094 Mlo: Mlo family; InterPro: IPR004326 The Mlo-related proteins are a family of plant integral membrane proteins, first discovered in barley. Mutants lacking wild-type Mlo proteins show broad spectrum resistance to the powdery mildew fungus, and dysregulated cell death control, with spontaneous cell death in response to developmental or abiotic stimuli. Thus wild-type Mlo proteins are thought to be inhibitors of cell death whose deficiency lowers the threshold required to trigger the cascade of events that result in plant cell death. Mlo proteins are localized in the plasma membrane and possess seven transmembrane regions; thus the Mlo family is the only major higher plant family to possess 7 transmembrane domains. It has been suggested that Mlo proteins function as G-protein coupled receptors in plants []; however the molecular and biological functions of Mlo proteins is still unclear.; GO: 0008219 cell death, 0016021 integral to membrane
Probab=100.00 E-value=1e-138 Score=1044.17 Aligned_cols=319 Identities=60% Similarity=1.034 Sum_probs=302.5
Q ss_pred CchhHHHHHHhhchhhcccccccccCcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhhhhhh--hccccccc-CCCcc
Q 019779 1 MVLGFISLILTFGQSYISKICIPSKVADTMLPCKADGKHDASDTSGDEHEHRRRLLWFQHRYLA--AAATSTEC-EKGSE 77 (336)
Q Consensus 1 MLLGFISLLLtv~q~~IskICIp~~~~~~~lPC~~~~~~~~~~~~~~~~~~~~~~l~~~rR~l~--~~~~~~~C-~~Gkv 77 (336)
|||||||||||++|++|+|||||++++++|+||+.+++.++.+ ++ ..+||+|+ +++++++| +||||
T Consensus 58 MlLGfiSLlLt~~q~~IskICIp~~~~~~~lPC~~~~~~~~~~-----~~------~~~r~ll~~~~~~~~~~C~~kGkv 126 (478)
T PF03094_consen 58 MLLGFISLLLTVFQNPISKICIPSSYASTMLPCKPPEESSKEG-----SS------HNRRRLLASGAAEGSDYCPKKGKV 126 (478)
T ss_pred HHHHHHHHHHHHHHHhHhHeecChhHHhcccCCCCcccccccc-----cc------hhhhhhhhhhcccccCcccccCcc
Confidence 8999999999999999999999999999999999655444321 10 14577776 34457899 46999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccCCCCCceeEeeeccchhcccCCCCCc
Q 019779 78 PLITVEALHQLHILIFFLAVFHVLYSAITMMLGRLKIRGWKKWEEETSTHDYEFSNDPSRFRLTHETSFVRAHTSFWTRI 157 (336)
Q Consensus 78 pl~S~e~lhQLHiFIFvLAv~HV~ys~lTm~Lg~~Kir~Wk~WE~e~~~~~~~~~~dp~r~r~~~qt~F~r~h~~~ws~~ 157 (336)
||+|+|||||||||||||||+||+|||+||+||++|||+||+||+|+++++|+.++||+|+|++||++|+|+|.++|+++
T Consensus 127 pliS~egLHQLHIFIFVLAV~HV~Ys~lTm~Lg~~KIr~Wk~WE~e~~~~~~~~~~d~~r~~~~~qt~F~r~h~~~w~~~ 206 (478)
T PF03094_consen 127 PLISAEGLHQLHIFIFVLAVVHVLYSCLTMLLGRAKIRRWKKWEDEAQTDEYQFSNDPRRFRLTRQTTFVRRHTSFWSKS 206 (478)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcceeeeecccHHHHhhcCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHhHhhhCcCcchhhHHHHHHhHhhhhcCCCCCCcHHHHHHHHHhhcccccceeChHHHHHHHHHHHhccCCcc
Q 019779 158 PFFFYVGCFFRQFFRSVSRADYLTLRNGFINVHLAPGSKFNFQKYIKRSLEDDFKIVVGVSPVLWTSFVVFLLLNVNGWH 237 (336)
Q Consensus 158 ~~l~wi~~FfrQF~~SV~k~DYltLR~gFI~~H~~~~~~FdFhkYi~RsLEdDFk~VVGIS~~lW~~vviFlllnv~Gw~ 237 (336)
+++.|++|||||||+||+|+||+|||+|||++|++|++||||||||+||||||||+||||||++|++||+|+|+|++|||
T Consensus 207 ~~~~wi~~FfrQF~~SV~k~DYltLR~gFI~~H~~~~~~FDFh~Yi~RsLEdDFk~VVGIS~~lW~~vv~fll~nv~gw~ 286 (478)
T PF03094_consen 207 PVLSWIVCFFRQFYGSVTKSDYLTLRHGFITAHLLPNPKFDFHKYIKRSLEDDFKVVVGISWYLWAFVVLFLLLNVHGWH 286 (478)
T ss_pred hhHHhHHHHHHHhhccccHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHheeccccHhhhhheeeeecCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccCccccccCCCccccCCchHHHHHHHHHHhhhhHHHHHHHHH
Q 019779 238 ALFWASLIPLIIILAIGTELQSILTKMALEISERHAVVQGIPLVQGSDQYFWFGRPQLVLHLIHFALFQGWGPISMQLHH 317 (336)
Q Consensus 238 ~yfWlsfiPlillLlVGtKLq~II~~la~ei~e~~~~v~g~~~v~psD~lFWF~rP~llL~LIHfiLFQNAFelAfF~W~ 317 (336)
+|||+||||++++|+||||||+||++||+|++|++++++|+|+|||+|++|||+||++||+||||||||||||||||+|+
T Consensus 287 ~yfW~sfipl~liL~VGtKLq~Ii~~ma~ei~~~~~~~~g~p~v~p~d~~FWF~rP~llL~lihfilFqnAFela~f~w~ 366 (478)
T PF03094_consen 287 TYFWLSFIPLILILLVGTKLQHIITKMALEIAERHAVIKGTPLVKPSDDLFWFGRPRLLLHLIHFILFQNAFELAFFFWI 366 (478)
T ss_pred eEeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccCcccccccccceecCCcHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH--hhhccccCCCC
Q 019779 318 SS--IICTCYSDGFT 330 (336)
Q Consensus 318 ~~--~~~~~~~~~~~ 330 (336)
|| |.+|||+++.+
T Consensus 367 ~~~~g~~sC~~~~~~ 381 (478)
T PF03094_consen 367 WWQFGFDSCFMENTE 381 (478)
T ss_pred HhcCCCceeEecCcc
Confidence 99 88999999754
No 2
>TIGR03777 RPE4 Rickettsial palindromic element RPE4 domain. This model describes protein translations of a family, RPE4, of Rickettsia palindromic elements (RPE). The elements spread within a genome as selfish genetic elements, inserting into genes additional coding region that does not disrupt the reading frame. This model finds RPE-encoded regions in several Rickettsial species and, so far, no where else.
Probab=48.77 E-value=7.7 Score=26.47 Aligned_cols=9 Identities=33% Similarity=0.530 Sum_probs=7.3
Q ss_pred ccccccCCC
Q 019779 278 IPLVQGSDQ 286 (336)
Q Consensus 278 ~~~v~psD~ 286 (336)
+|+||||||
T Consensus 24 D~VvKPR~D 32 (32)
T TIGR03777 24 DPVVKPRDD 32 (32)
T ss_pred ccccccCCC
Confidence 578999886
No 3
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=34.64 E-value=22 Score=34.15 Aligned_cols=39 Identities=33% Similarity=0.526 Sum_probs=27.4
Q ss_pred HHHHHHHHhhcccccceeChHHHHHHHHHHHhccCCcchhhhhh
Q 019779 200 QKYIKRSLEDDFKIVVGVSPVLWTSFVVFLLLNVNGWHALFWAS 243 (336)
Q Consensus 200 hkYi~RsLEdDFk~VVGIS~~lW~~vviFlllnv~Gw~~yfWls 243 (336)
++|=-| +||.-.++| +..||-||+|++|.=. .+.++||+
T Consensus 25 qdyEc~--KDdsc~~iG-~fLlWyfviilvLm~~--~ras~Wms 63 (243)
T PF15468_consen 25 QDYECR--KDDSCGAIG-SFLLWYFVIILVLMFF--SRASVWMS 63 (243)
T ss_pred cchhhc--cCCccchhh-hHHHHHHHHHHHHHHH--HHHHHHHh
Confidence 455444 899888887 7899999998775532 45556654
No 4
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=26.34 E-value=1.6e+02 Score=23.36 Aligned_cols=39 Identities=21% Similarity=0.503 Sum_probs=21.1
Q ss_pred HhccCCcchhhhhh----hHHHHHHHHHhh-----hHHHHHHHHHHHH
Q 019779 230 LLNVNGWHALFWAS----LIPLIIILAIGT-----ELQSILTKMALEI 268 (336)
Q Consensus 230 llnv~Gw~~yfWls----fiPlillLlVGt-----KLq~II~~la~ei 268 (336)
++|..|.-.|-|++ .+|++++++.-- -|+.|--+.|.|.
T Consensus 9 FfaMGgyafyVWlA~~~tll~l~~l~v~sv~qrr~iL~~v~r~~aRea 56 (67)
T COG3114 9 FFAMGGYAFYVWLAVGMTLLPLAVLVVHSVLQRRAILRGVARQRAREA 56 (67)
T ss_pred HHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677755 566665544432 2444555555554
No 5
>PF10751 DUF2535: Protein of unknown function (DUF2535); InterPro: IPR019687 This entry represents proteins with unknown function, and appear to be restricted to Bacillus spp.
Probab=18.17 E-value=83 Score=25.85 Aligned_cols=17 Identities=35% Similarity=0.872 Sum_probs=14.1
Q ss_pred CCCCCCcHHHHHHHHHh
Q 019779 192 APGSKFNFQKYIKRSLE 208 (336)
Q Consensus 192 ~~~~~FdFhkYi~RsLE 208 (336)
.+...|.|++|++|.|-
T Consensus 50 ~~~~vYSFreYlKr~lK 66 (83)
T PF10751_consen 50 SPRKVYSFREYLKRVLK 66 (83)
T ss_pred CCCceeeHHHHHHHhcC
Confidence 34568999999999984
No 6
>PF15444 TMEM247: Transmembrane protein 247
Probab=17.46 E-value=1.6e+02 Score=27.86 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019779 92 IFFLAVFHVLYSAITMMLGRLKI 114 (336)
Q Consensus 92 IFvLAv~HV~ys~lTm~Lg~~Ki 114 (336)
||+|---|-+||+.+++|...|.
T Consensus 193 vfflfskhylfciaaillclikt 215 (218)
T PF15444_consen 193 VFFLFSKHYLFCIAAILLCLIKT 215 (218)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 46666778899999999999884
No 7
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=17.26 E-value=64 Score=28.45 Aligned_cols=42 Identities=29% Similarity=0.375 Sum_probs=22.9
Q ss_pred hHhhhhcCCCCCCcHHHHHHHHHhhcccccceeChHHHHHHHHH
Q 019779 185 GFINVHLAPGSKFNFQKYIKRSLEDDFKIVVGVSPVLWTSFVVF 228 (336)
Q Consensus 185 gFI~~H~~~~~~FdFhkYi~RsLEdDFk~VVGIS~~lW~~vviF 228 (336)
||+..-.+=.+...|+.-..|.+++.- +--.||..|-|.+.|
T Consensus 113 g~vv~klPFpl~~~f~~~~qrgl~~~d--~~~~s~i~wYfL~s~ 154 (168)
T PF01956_consen 113 GFVVAKLPFPLTGRFKSMLQRGLEGLD--VSYVSSISWYFLCSF 154 (168)
T ss_pred hcceEEeeccccHHHhHHhhcCCCCCc--ccHhHHHHHHHHHHH
Confidence 666554332346778888888885422 222355555444443
No 8
>smart00153 VHP Villin headpiece domain.
Probab=15.88 E-value=44 Score=23.16 Aligned_cols=12 Identities=33% Similarity=0.775 Sum_probs=10.7
Q ss_pred hhcccccceeCh
Q 019779 208 EDDFKIVVGVSP 219 (336)
Q Consensus 208 EdDFk~VVGIS~ 219 (336)
++||+.|.|+|.
T Consensus 4 deeF~~vfgmsr 15 (36)
T smart00153 4 DEDFEEVFGMTR 15 (36)
T ss_pred HHHHHHHHCCCH
Confidence 789999999985
No 9
>PF08921 DUF1904: Domain of unknown function (DUF1904); InterPro: IPR015017 This entry represents a family of hypothetical bacterial proteins. ; PDB: 1U9D_B.
Probab=15.68 E-value=1.3e+02 Score=25.45 Aligned_cols=12 Identities=42% Similarity=0.761 Sum_probs=6.7
Q ss_pred CCccccCCchHH
Q 019779 285 DQYFWFGRPQLV 296 (336)
Q Consensus 285 D~lFWF~rP~ll 296 (336)
=|..||.||+=+
T Consensus 58 VEV~WF~R~qe~ 69 (108)
T PF08921_consen 58 VEVLWFDRGQEV 69 (108)
T ss_dssp EEEEES---HHH
T ss_pred EEEEEecCCHHH
Confidence 478999999754
No 10
>PF09060 L27_N: L27_N; InterPro: IPR015145 The L27_N domain plays a role in the biogenesis of tight junctions and in the establishment of cell polarity in epithelial cells. Each L27_N domain consists of three alpha-helices, the first two of which form an antiparallel coiled-coil. Two L27 domains come together to form a four-helical bundle with the antiparallel coiled-coils formed by the first two helices. The third helix of each domain forms another coiled-coil packing at one end of the four-helix bundle, creating a large hydrophobic interface: the hydrophobic interactions are the major force that drives heterodimer formation []. ; PDB: 1Y76_B 3UIT_B 1VF6_C.
Probab=15.54 E-value=1.6e+02 Score=22.07 Aligned_cols=18 Identities=33% Similarity=0.360 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHhhhhHHH
Q 019779 294 QLVLHLIHFALFQGWGPI 311 (336)
Q Consensus 294 ~llL~LIHfiLFQNAFel 311 (336)
.++|.|.|=.=|||||-|
T Consensus 26 ~lllqLl~~~dFq~A~~I 43 (49)
T PF09060_consen 26 ELLLQLLQNSDFQNAFKI 43 (49)
T ss_dssp HHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHhhHhHHHHHHH
Confidence 688999999999999976
Done!