Query 019779
Match_columns 336
No_of_seqs 141 out of 241
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 06:58:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019779.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019779hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 23.3 1.3E+02 0.0046 22.9 5.1 23 113-135 40-62 (79)
2 1wy3_A Villin; structural prot 14.4 31 0.001 22.9 -0.4 12 208-219 3-14 (35)
3 1und_A Advillin, P92; actin bi 14.0 32 0.0011 23.1 -0.4 12 208-219 5-16 (37)
4 2kv9_B Integrin beta-3; platel 13.9 64 0.0022 24.9 1.3 27 109-135 32-58 (75)
5 1vf6_C Maguk P55 subfamily mem 9.5 1.5E+02 0.005 22.7 1.9 18 294-311 40-57 (72)
6 1iyc_A Scarabaecin; antifungal 9.3 95 0.0032 20.3 0.7 8 70-77 16-23 (36)
7 1jek_B ENV polyprotein; envelo 9.2 86 0.0029 21.0 0.5 10 116-125 1-10 (36)
8 2ztb_A Crystal protein; beta-h 9.1 56 0.0019 30.5 -0.6 17 281-297 203-219 (252)
9 1s4x_A Integrin beta-3; cell a 8.4 2.3E+02 0.008 21.1 2.7 27 109-135 24-50 (67)
10 3n2f_G Na+/K+ ATPase gamma sub 8.2 1.3E+02 0.0043 19.5 1.0 8 178-185 6-13 (31)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=23.30 E-value=1.3e+02 Score=22.90 Aligned_cols=23 Identities=26% Similarity=0.588 Sum_probs=16.6
Q ss_pred HHhhhhhhhhhhhccccccCCCC
Q 019779 113 KIRGWKKWEEETSTHDYEFSNDP 135 (336)
Q Consensus 113 Kir~Wk~WE~e~~~~~~~~~~dp 135 (336)
.-|.++++|+|-++...+..++|
T Consensus 40 DrrE~~kFEkE~~~~~w~~~~NP 62 (79)
T 2knc_B 40 DRKEFAKFEEERARAKWDTANNP 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHhcccccCCCC
Confidence 37899999999876655544555
No 2
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=14.41 E-value=31 Score=22.92 Aligned_cols=12 Identities=42% Similarity=0.883 Sum_probs=10.6
Q ss_pred hhcccccceeCh
Q 019779 208 EDDFKIVVGVSP 219 (336)
Q Consensus 208 EdDFk~VVGIS~ 219 (336)
++||++|.|+|-
T Consensus 3 d~dF~~vFgmsr 14 (35)
T 1wy3_A 3 DEDFKAVFGMTR 14 (35)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCCCH
Confidence 689999999985
No 3
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=13.99 E-value=32 Score=23.07 Aligned_cols=12 Identities=42% Similarity=0.736 Sum_probs=10.7
Q ss_pred hhcccccceeCh
Q 019779 208 EDDFKIVVGVSP 219 (336)
Q Consensus 208 EdDFk~VVGIS~ 219 (336)
++||++|.|+|-
T Consensus 5 d~dF~~vFgmsr 16 (37)
T 1und_A 5 EQDFVSVFGITR 16 (37)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCcCH
Confidence 689999999985
No 4
>2kv9_B Integrin beta-3; platelet glycoprotein IIIA, GPIIIA, C adhesion; NMR {Homo sapiens}
Probab=13.94 E-value=64 Score=24.87 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=18.6
Q ss_pred HHHHHHhhhhhhhhhhhccccccCCCC
Q 019779 109 LGRLKIRGWKKWEEETSTHDYEFSNDP 135 (336)
Q Consensus 109 Lg~~Kir~Wk~WE~e~~~~~~~~~~dp 135 (336)
+.+.--|.++++|+|-++...+..++|
T Consensus 32 ~~i~DrREyaKFEkEr~~akw~~~eNP 58 (75)
T 2kv9_B 32 ITIHDRKEFAKFEEERARAKWDTANNP 58 (75)
T ss_dssp HHHHHCHHHHHHHHHHHHGGGSSTTSH
T ss_pred HhhHHHHHHHHHHHHHHHhccccccCC
Confidence 334446899999999876665545555
No 5
>1vf6_C Maguk P55 subfamily member 5; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Mus musculus} SCOP: a.194.1.1
Probab=9.46 E-value=1.5e+02 Score=22.65 Aligned_cols=18 Identities=33% Similarity=0.307 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHhhhhHHH
Q 019779 294 QLVLHLIHFALFQGWGPI 311 (336)
Q Consensus 294 ~llL~LIHfiLFQNAFel 311 (336)
.++|.|.|=.=|||||-+
T Consensus 40 ~lllqL~~~~DFQ~A~kI 57 (72)
T 1vf6_C 40 SLLLQLVQNRDFQNAFKI 57 (72)
T ss_dssp HHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 688899999999999976
No 6
>1iyc_A Scarabaecin; antifungal peptide, antimicrobial peptide, beetle, chitin-binding, antifungal protein; NMR {Synthetic} SCOP: g.31.1.2
Probab=9.26 E-value=95 Score=20.35 Aligned_cols=8 Identities=38% Similarity=0.891 Sum_probs=6.5
Q ss_pred cccCCCcc
Q 019779 70 TECEKGSE 77 (336)
Q Consensus 70 ~~C~~Gkv 77 (336)
..|+||||
T Consensus 16 sncpkgkv 23 (36)
T 1iyc_A 16 SNCPKGKV 23 (36)
T ss_dssp SCCCSSCE
T ss_pred cCCCCcce
Confidence 46999987
No 7
>1jek_B ENV polyprotein; envelope glycoprotein, retrovirus, HIV, SIV, GP41, viral Pro; 1.50A {Synthetic} SCOP: h.3.2.1
Probab=9.23 E-value=86 Score=21.03 Aligned_cols=10 Identities=50% Similarity=1.365 Sum_probs=7.1
Q ss_pred hhhhhhhhhh
Q 019779 116 GWKKWEEETS 125 (336)
Q Consensus 116 ~Wk~WE~e~~ 125 (336)
.|..||+++.
T Consensus 1 TWqqWereI~ 10 (36)
T 1jek_B 1 XWQQWEEEIE 10 (36)
T ss_dssp -CHHHHHHHH
T ss_pred CccHHHHHHH
Confidence 3788888875
No 8
>2ztb_A Crystal protein; beta-hairpin, toxin; 2.38A {Bacillus thuringiensis serovar dakota}
Probab=9.07 E-value=56 Score=30.51 Aligned_cols=17 Identities=41% Similarity=0.847 Sum_probs=12.9
Q ss_pred cccCCCccccCCchHHH
Q 019779 281 VQGSDQYFWFGRPQLVL 297 (336)
Q Consensus 281 v~psD~lFWF~rP~llL 297 (336)
|-|++++|||..++-+|
T Consensus 203 v~~~gHyfWf~~v~~ll 219 (252)
T 2ztb_A 203 VGPGGHYFWFNPARDVL 219 (252)
T ss_dssp ETTTTEEEEEEEHHHHS
T ss_pred ccCCCcEEEeCCHHHHh
Confidence 45788888888877665
No 9
>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2ljd_A* 2lje_A* 2ljf_A*
Probab=8.42 E-value=2.3e+02 Score=21.12 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=18.9
Q ss_pred HHHHHHhhhhhhhhhhhccccccCCCC
Q 019779 109 LGRLKIRGWKKWEEETSTHDYEFSNDP 135 (336)
Q Consensus 109 Lg~~Kir~Wk~WE~e~~~~~~~~~~dp 135 (336)
+.+---|.++++|+|-++...+..++|
T Consensus 24 ~~i~DrrEyakFE~Er~~akw~~~~NP 50 (67)
T 1s4x_A 24 ITIHDRKEFAKFEEERARAKWDTANNP 50 (67)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTCSSSST
T ss_pred HhhhhHHHHHHHHHHHHHccccccCCC
Confidence 334446899999999876666555556
No 10
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=8.25 E-value=1.3e+02 Score=19.50 Aligned_cols=8 Identities=75% Similarity=1.211 Sum_probs=6.2
Q ss_pred hHHHHHHh
Q 019779 178 DYLTLRNG 185 (336)
Q Consensus 178 DYltLR~g 185 (336)
||-+||.|
T Consensus 6 Dy~tLrig 13 (31)
T 3n2f_G 6 DYETVRNG 13 (31)
T ss_dssp CHHHHHHH
T ss_pred ChHHHhhc
Confidence 78888876
Done!