BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019781
(336 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DGW|C Chain C, Crystal Structure Of The Sf3a Splicing Factor Complex Of
U2 Snrnp
Length = 231
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 24/117 (20%)
Query: 111 GRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSK--PRHRFMSSFEQRVQPFDKRYQYLM 168
G G + + E K+ S+ + +D +K P R +S E K ++L+
Sbjct: 114 GSVGXAIQVNYSSEVKENSV-------DSDDKAKVPPLIRIVSGLELS-DTKQKGKKFLV 165
Query: 169 FAAEPYEIIAFKVPSTEIDKSTP--------------KFFSHWDPDSKMFTLQLYFK 211
A EP+E IA ++P EI S K + WD SK++ +Q +FK
Sbjct: 166 IAYEPFENIAIELPPNEILFSENNDXDNNNDGVDELNKKCTFWDAISKLYYVQFFFK 222
>pdb|3Q66|C Chain C, Structure Of The Vps75-Rtt109 Histone Chaperone-Lysine
Acetyltransferase Complex (Full-Length Proteins In Space
Group P6122)
pdb|3Q68|C Chain C, Structure Of The Vps75-Rtt109 Histone Chaperone-Lysine
Acetyltransferase Complex (Full-Length Proteins In Space
Group P212121)
Length = 442
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 145 PRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPK-------FFSHW 197
P ++ F V P ++++YL + P E A P+ + DK PK FFS +
Sbjct: 4 PNSMSLNDFLSSVLPVSEQFEYLSLQSIPLETHAVVTPNKD-DKRVPKSTIKTQHFFSLF 62
Query: 198 DPDSKMFTLQLY 209
F+L++Y
Sbjct: 63 HQGKVFFSLEVY 74
>pdb|2ZFN|A Chain A, Self-Acetylation Mediated Histone H3 Lysine 56 Acetylation
By Rtt109
Length = 460
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 150 MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPK-------FFSHWDPDSK 202
++ F V P ++++YL + P E A P+ + DK PK FFS +
Sbjct: 27 LNDFLSSVLPVSEQFEYLSLQSIPLETHAVVTPNKD-DKRVPKSTIKTQHFFSLFHQGKV 85
Query: 203 MFTLQLY 209
F+L++Y
Sbjct: 86 FFSLEVY 92
>pdb|2RIM|A Chain A, Crystal Structure Of Rtt109
Length = 457
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 150 MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPK-------FFSHWDPDSK 202
++ F V P ++++YL + P E A P+ + DK PK FFS +
Sbjct: 24 LNDFLSSVLPVSEQFEYLSLQSIPLETHAVVTPNKD-DKRVPKSTIKTQHFFSLFHQGKV 82
Query: 203 MFTLQLY 209
F+L++Y
Sbjct: 83 FFSLEVY 89
>pdb|4ACQ|A Chain A, Alpha-2 Macroglobulin
pdb|4ACQ|B Chain B, Alpha-2 Macroglobulin
pdb|4ACQ|C Chain C, Alpha-2 Macroglobulin
pdb|4ACQ|D Chain D, Alpha-2 Macroglobulin
Length = 1451
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 152 SFEQRVQPFDKRYQYLM------FAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFT 205
SF +PF Y+ ++ P+ + F +P E+ + PK + + + +
Sbjct: 168 SFPLSSEPFQGSYKVVVQKKSGGRTEHPFTVEEFVLPKFEVQVTVPKIITILEEEMNVSV 227
Query: 206 LQLYFKSKPVEGN 218
LY KPV G+
Sbjct: 228 CGLYTYGKPVPGH 240
>pdb|3QM0|A Chain A, Crystal Structure Of Rtt109-Ac-Coa Complex
Length = 388
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 150 MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPK-------FFSHWDPDSK 202
++ F V P ++++YL + P E A P+ + DK PK FFS +
Sbjct: 5 LNDFLSSVLPVSEQFEYLSLQSIPLETHAVVTPNKD-DKRVPKSTIKTQHFFSLFHQGKV 63
Query: 203 MFTLQLY 209
F+L++Y
Sbjct: 64 FFSLEVY 70
>pdb|3Q33|A Chain A, Structure Of The Rtt109-AccoaVPS75 COMPLEX AND
IMPLICATIONS FOR Chaperone-Mediated Histone Acetylation
pdb|3Q35|A Chain A, Structure Of The Rtt109-AccoaVPS75 COMPLEX AND
IMPLICATIONS FOR Chaperone-Mediated Histone Acetylation
Length = 438
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 150 MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPK-------FFSHWDPDSK 202
++ F V P ++++YL + P E A P+ + DK PK FFS +
Sbjct: 5 LNDFLSSVLPVSEQFEYLSLQSIPLETHAVVTPNKD-DKRVPKSTIKTQHFFSLFHQGKV 63
Query: 203 MFTLQLY 209
F+L++Y
Sbjct: 64 FFSLEVY 70
>pdb|3CZ7|A Chain A, Molecular Basis For The Autoregulation Of The Protein
Acetyl Transferase Rtt109
Length = 364
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 150 MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPK-------FFSHWDPDSK 202
++ F V P ++++YL + P E A P+ + DK PK FFS +
Sbjct: 3 LNDFLSSVLPVSEQFEYLSLQSIPLETHAVVTPNKD-DKRVPKSTIKTQHFFSLFHQGKV 61
Query: 203 MFTLQLY 209
F+L++Y
Sbjct: 62 FFSLEVY 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,639,177
Number of Sequences: 62578
Number of extensions: 240010
Number of successful extensions: 412
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 411
Number of HSP's gapped (non-prelim): 9
length of query: 336
length of database: 14,973,337
effective HSP length: 99
effective length of query: 237
effective length of database: 8,778,115
effective search space: 2080413255
effective search space used: 2080413255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)