BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019781
(336 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q15428|SF3A2_HUMAN Splicing factor 3A subunit 2 OS=Homo sapiens GN=SF3A2 PE=1 SV=2
Length = 464
Score = 282 bits (721), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 146/206 (70%), Positives = 174/206 (84%)
Query: 6 GSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEG 65
G K GSGG AS+ DRRERLR+LALETID+ KDPYFM+NHLGSYECKLCLTLHNNEG
Sbjct: 8 GGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEG 67
Query: 66 NYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRKVNVRKTVKIGRPGYRVTKQFDPET 125
+YLAHTQGK+HQTNLA+RAA+EAK+APAQP P K KV V+K VKIGRPGY+VTKQ D E
Sbjct: 68 SYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVTKQRDSEM 127
Query: 126 KQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTE 185
Q+SLLFQI+YPEI + PRHRFMS++EQR++P D+R+QYL+ AAEPYE IAFKVPS E
Sbjct: 128 GQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSRE 187
Query: 186 IDKSTPKFFSHWDPDSKMFTLQLYFK 211
IDK+ KF++HW+ ++K F LQ +FK
Sbjct: 188 IDKAEGKFWTHWNRETKQFFLQFHFK 213
>sp|Q6AXT8|SF3A2_RAT Splicing factor 3A subunit 2 OS=Rattus norvegicus GN=Sf3a2 PE=2
SV=1
Length = 471
Score = 282 bits (721), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 146/206 (70%), Positives = 174/206 (84%)
Query: 6 GSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEG 65
G K GSGG AS+ DRRERLR+LALETID+ KDPYFM+NHLGSYECKLCLTLHNNEG
Sbjct: 8 GGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEG 67
Query: 66 NYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRKVNVRKTVKIGRPGYRVTKQFDPET 125
+YLAHTQGK+HQTNLA+RAA+EAK+APAQP P K KV V+K VKIGRPGY+VTKQ D E
Sbjct: 68 SYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVTKQRDTEM 127
Query: 126 KQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTE 185
Q+SLLFQI+YPEI + PRHRFMS++EQR++P D+R+QYL+ AAEPYE IAFKVPS E
Sbjct: 128 GQQSLLFQIDYPEIAEGVMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSRE 187
Query: 186 IDKSTPKFFSHWDPDSKMFTLQLYFK 211
IDK+ KF++HW+ ++K F LQ +FK
Sbjct: 188 IDKAEGKFWTHWNRETKQFFLQFHFK 213
>sp|A5PJN8|SF3A2_BOVIN Splicing factor 3A subunit 2 OS=Bos taurus GN=SF3A2 PE=2 SV=1
Length = 477
Score = 281 bits (719), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 146/206 (70%), Positives = 174/206 (84%)
Query: 6 GSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEG 65
G K GSGG AS+ DRRERLR+LALETID+ KDPYFM+NHLGSYECKLCLTLHNNEG
Sbjct: 8 GGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEG 67
Query: 66 NYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRKVNVRKTVKIGRPGYRVTKQFDPET 125
+YLAHTQGK+HQTNLA+RAA+EAK+APAQP P K KV V+K VKIGRPGY+VTKQ D E
Sbjct: 68 SYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVTKQRDTEM 127
Query: 126 KQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTE 185
Q+SLLFQI+YPEI + PRHRFMS++EQR++P D+R+QYL+ AAEPYE IAFKVPS E
Sbjct: 128 GQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSRE 187
Query: 186 IDKSTPKFFSHWDPDSKMFTLQLYFK 211
IDK+ KF++HW+ ++K F LQ +FK
Sbjct: 188 IDKAEGKFWTHWNRETKQFFLQFHFK 213
>sp|Q54B65|SF3A2_DICDI Splicing factor 3A subunit 2 OS=Dictyostelium discoideum GN=sf3a2
PE=3 SV=1
Length = 215
Score = 271 bits (694), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 129/214 (60%), Positives = 169/214 (78%), Gaps = 8/214 (3%)
Query: 4 EWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNN 63
E+G K GSGG S+Q + IDRRER ++L LE +D++KDPY + NH+GS+EC+LCLT+HNN
Sbjct: 3 EYG-KAGSGGLQSSQYDNIDRRERQKQLVLEHVDVSKDPYIISNHIGSFECRLCLTVHNN 61
Query: 64 EGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPH---KRKVNVRKTVKIGRPGYRVTKQ 120
GNYLAHTQGK+HQT+LA+RAA+E ++ P+ + + +V +KT+KIGRPGY++ KQ
Sbjct: 62 VGNYLAHTQGKKHQTHLARRAAKEQRENPSVSKNNYIQTTRVIHKKTIKIGRPGYKIIKQ 121
Query: 121 FDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFK 180
D +T Q SLLFQI+YPEIE +PRHR MS+FEQRV+ +K YQYL+FAAEPYE IAFK
Sbjct: 122 RDSKTGQLSLLFQIDYPEIESGLQPRHRIMSAFEQRVEQPNKDYQYLLFAAEPYETIAFK 181
Query: 181 VPSTEIDKST---PKFFSHWDPDSKMFTLQLYFK 211
+P+ EID++T KFF+HWD + K FTLQLYFK
Sbjct: 182 IPNKEIDRTTGPDGKFFTHWDRN-KTFTLQLYFK 214
>sp|Q62203|SF3A2_MOUSE Splicing factor 3A subunit 2 OS=Mus musculus GN=Sf3a2 PE=2 SV=2
Length = 475
Score = 264 bits (675), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 142/206 (68%), Positives = 166/206 (80%), Gaps = 10/206 (4%)
Query: 6 GSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEG 65
G K GSGG AS+ DRRERLR+LALETID+ KDPYFM+NHLGSYECKLCLTLHNNEG
Sbjct: 8 GGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEG 67
Query: 66 NYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRKVNVRKTVKIGRPGYRVTKQFDPET 125
+YLAHTQGK+HQTNLA+RAA+EAK+APAQP P + KV V+K VKIGRPGY+VTKQ D E
Sbjct: 68 SYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEQVKVEVKKFVKIGRPGYKVTKQRDTEM 127
Query: 126 KQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTE 185
Q+SLLFQI+YPEI + PRHRFMS++EQR++P D+R+QYL+ AAEPYE IAFKVPS E
Sbjct: 128 GQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSRE 187
Query: 186 IDKSTPKFFSHWDPDSKMFTLQLYFK 211
IDK+ KF F LQ +FK
Sbjct: 188 IDKAEGKF----------FFLQFHFK 203
>sp|Q9P7L8|SAP62_SCHPO Pre-mRNA-splicing factor sap62 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=sap62 PE=1 SV=1
Length = 217
Score = 219 bits (558), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 112/214 (52%), Positives = 150/214 (70%), Gaps = 19/214 (8%)
Query: 6 GSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEG 65
G + G GG A Q RRERLR+LALETIDL+KDPY M+NHLG++EC+LCLT H NE
Sbjct: 8 GVRFGGGGVAGYQETNAARRERLRKLALETIDLSKDPYLMKNHLGTFECRLCLTTHANEN 67
Query: 66 NYLAHTQGKRHQTNLAKRAAREAKDAPAQ--------PQPHKRKVNVRKT-VKIGRPGYR 116
+YL HTQGK+HQTNLA+R A E K + Q H V V+K+ VKIGRPGY+
Sbjct: 68 SYLTHTQGKKHQTNLARRQALENKKSQENAPQVLLGISQSH---VQVKKSVVKIGRPGYK 124
Query: 117 VTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEI 176
V+K + E+ + L FQI+YP+IE +KPR+R MS++EQRV+ D+++QYL+ AAEPYE
Sbjct: 125 VSKIREAESGKFGLRFQIKYPDIEVNAKPRYRIMSAYEQRVEAPDRKFQYLVVAAEPYES 184
Query: 177 IAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYF 210
IAFK ID++ KF+S+WD + +T+Q ++
Sbjct: 185 IAFK-----IDRAPGKFWSYWDAPT--YTIQFFY 211
>sp|P19835|CEL_HUMAN Bile salt-activated lipase OS=Homo sapiens GN=CEL PE=1 SV=3
Length = 753
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 48/118 (40%), Gaps = 14/118 (11%)
Query: 224 PAANGAVAPPPPPPPQGPPPGVSAGNAPRAPPPPMTGTLPPPPPPMAN-GPRPMPPGGAP 282
P + AP PP G PP G++ P PP + PP PP + G P+PP G
Sbjct: 573 PTGDSETAPVPPTGDSGAPPVPPTGDSGAPPVPPTGDSGAPPVPPTGDSGAPPVPPTGDS 632
Query: 283 PAPPPPPGGSGTMANFTPGTQVGRPPT-------MPPPPPQGYGGQQMPIRPPPPPPN 333
APP PP G P G PP PP PP G G PPP PP
Sbjct: 633 GAPPVPPTGDSGAPPVPPTGDSGAPPVPPTGDSGAPPVPPTGDAG------PPPVPPT 684
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.136 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,088,052
Number of Sequences: 539616
Number of extensions: 10425101
Number of successful extensions: 225890
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2388
Number of HSP's successfully gapped in prelim test: 3088
Number of HSP's that attempted gapping in prelim test: 57738
Number of HSP's gapped (non-prelim): 54820
length of query: 336
length of database: 191,569,459
effective HSP length: 118
effective length of query: 218
effective length of database: 127,894,771
effective search space: 27881060078
effective search space used: 27881060078
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)