BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019782
         (336 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AWL|A Chain A, The Nf-y Transcription Factor Is Structurally And
           Functionally A Sequence Specific Histone
          Length = 78

 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/61 (67%), Positives = 48/61 (78%)

Query: 188 DEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNT 247
           +EP+YVNAKQY  IL+RRQ RAKLEA+ K+ K R+ YLHESRH HAM R RG GGRF + 
Sbjct: 2   EEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSP 61

Query: 248 K 248
           K
Sbjct: 62  K 62


>pdb|4G91|A Chain A, Ccaat-Binding Complex From Aspergillus Nidulans
 pdb|4G92|A Chain A, Ccaat-Binding Complex From Aspergillus Nidulans With Dna
          Length = 64

 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/60 (66%), Positives = 45/60 (75%), Gaps = 1/60 (1%)

Query: 188 DEPIYVNAKQYRAILRRRQYRAKLEAQNKLV-KGRKPYLHESRHAHAMNRARGSGGRFLN 246
           + P+YVNAKQ+  IL+RR  R KLE Q +L  KGRKPYLHESRH HAM R RG GGRFL 
Sbjct: 2   ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLT 61


>pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal-
           Type Aspartyl-Trna Synthetase From Thermus Thermophilus
 pdb|1N9W|B Chain B, Crystal Structure Of The Non-Discriminating And Archaeal-
           Type Aspartyl-Trna Synthetase From Thermus Thermophilus
 pdb|3KFU|A Chain A, Crystal Structure Of The Transamidosome
 pdb|3KFU|B Chain B, Crystal Structure Of The Transamidosome
 pdb|3KFU|C Chain C, Crystal Structure Of The Transamidosome
 pdb|3KFU|D Chain D, Crystal Structure Of The Transamidosome
          Length = 422

 Score = 28.9 bits (63), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 161 PQAMQIHHPQMMGMAPARVPLPLELAEDE----PIYVNAKQYRAILRRRQYRAKLEAQNK 216
           P  +++   ++  ++PA  P P+E+ ++E    P  +   +Y   LR  + RA L+ Q  
Sbjct: 72  PGGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRY-VTLRGEKARAPLKVQAA 130

Query: 217 LVKGRKPYL 225
           LV+G + YL
Sbjct: 131 LVRGFRRYL 139


>pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From
           Sulfolobus Tokodaii
 pdb|1WYD|B Chain B, Crystal Structure Of Aspartyl-Trna Synthetase From
           Sulfolobus Tokodaii
          Length = 429

 Score = 28.5 bits (62), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 14/70 (20%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 161 PQAMQIHHPQMMGMAPARVPLPLELAEDEPIYVNAKQYRAI--LRRRQYRAKLEAQNKLV 218
           P+ +++H  ++  ++ A+ PLPL+++      ++ +    +  LRR++ +A ++ Q+  +
Sbjct: 82  PRGIELHAEEITLLSKAKAPLPLDVSGKVKADIDTRLRERVLDLRRQEMQAVIKIQSLAL 141

Query: 219 KGRKPYLHES 228
           K  +  L++ 
Sbjct: 142 KAFRETLYKE 151


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.131    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,194,953
Number of Sequences: 62578
Number of extensions: 342038
Number of successful extensions: 682
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 679
Number of HSP's gapped (non-prelim): 8
length of query: 336
length of database: 14,973,337
effective HSP length: 99
effective length of query: 237
effective length of database: 8,778,115
effective search space: 2080413255
effective search space used: 2080413255
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)