Query 019782
Match_columns 336
No_of_seqs 152 out of 224
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 04:30:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019782.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019782hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1561 CCAAT-binding factor, 100.0 4.1E-50 8.9E-55 380.2 17.3 257 43-301 22-306 (307)
2 smart00521 CBF CCAAT-Binding t 100.0 2.6E-37 5.7E-42 236.0 5.6 61 187-247 2-62 (62)
3 PF02045 CBFB_NFYA: CCAAT-bind 100.0 4.9E-35 1.1E-39 221.3 3.7 57 188-244 1-58 (58)
4 COG5224 HAP2 CCAAT-binding fac 99.8 1.7E-21 3.6E-26 179.5 3.8 68 188-257 158-225 (248)
5 PF06203 CCT: CCT motif; Inte 72.9 3.3 7.1E-05 30.7 2.4 27 222-249 19-45 (45)
6 KOG1561 CCAAT-binding factor, 69.1 3.1 6.8E-05 41.0 2.1 44 201-249 14-57 (307)
7 PF15046 DUF4532: Protein of u 20.4 2.2E+02 0.0047 28.4 5.4 50 186-246 130-196 (279)
8 PF12254 DNA_pol_alpha_N: DNA 20.0 85 0.0019 24.9 2.2 22 186-207 21-44 (67)
9 PF10200 Ndufs5: NADH:ubiquino 19.9 1.2E+02 0.0025 25.8 3.1 25 194-218 69-93 (96)
10 PF11112 PyocinActivator: Pyoc 18.0 1.5E+02 0.0032 23.8 3.2 35 176-210 39-76 (76)
No 1
>KOG1561 consensus CCAAT-binding factor, subunit B (HAP2) [Transcription]
Probab=100.00 E-value=4.1e-50 Score=380.23 Aligned_cols=257 Identities=29% Similarity=0.338 Sum_probs=186.1
Q ss_pred cccceeeccccccccccccccccccCCCCcccc-CCCCc---ccccccccCC-------CCCCccccCCCCCCcccccCC
Q 019782 43 CLSLKMAVPRQQFANTKQLSFQFQDQESSSTQS-TGQSC---SKEACVKDDN-------PSRQSVVSAPPGFNGIHVKPV 111 (336)
Q Consensus 43 ~lslk~~~~~~~~~~~K~~~~q~qdqdSsStqS-tgqS~---~ev~~~~~~~-------~~~q~~~s~~~~~~g~~~k~~ 111 (336)
.+..+.....+....++..+.+++++||+.++| ++++. .|++.-++.+ ..-|..++..+.+. ++++.
T Consensus 22 q~~~~~~~~~~~~p~~~~s~~~~q~~~s~~~~s~~g~~~~~~~e~~~~~~~~~~~~~~~~~~~v~~s~~s~~~--~v~~~ 99 (307)
T KOG1561|consen 22 QKPEERGVQTTKKPYLHESGHKHQMGPGGRFLSADGVSKLRAQEAANGGSTGDDVNATNNDAQVAATVSSEVT--HVEGY 99 (307)
T ss_pred ccccccccccccccccCcccccccccccccccCccccccccccccccccccccccccccccceeeeccCCcce--ecccc
Confidence 445555666677778999999999999999999 67777 5766665554 34455555555433 24555
Q ss_pred CCccccc-cccCCCCcc-cCCCC-CCCCCccccc-cCCCCCcccCcccCC--CCCCchhhccCCcccCCCC-CccCCCcC
Q 019782 112 GGHSKLA-SSMGPHDFV-FTPPH-VDYNQSVAPF-QLHYAEPYFSGLLSP--FLPPQAMQIHHPQMMGMAP-ARVPLPLE 184 (336)
Q Consensus 112 ~~~~k~~-~~~~~~d~~-~~~~q-~~~gqs~a~~-~ypy~dpyygg~~aa--~Yg~q~~~~~~pq~~g~~~-~r~plP~~ 184 (336)
.+..++. .++++.-.. .+... .-..+..+++ .+||.+|||+|++.. +|++++...+++|+.||.+ .|+|||.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~s~~~~~~p~~~g~~~~~~~y~~~~~~~~~~q~~g~~~~~r~pLP~~ 179 (307)
T KOG1561|consen 100 ADSNDSRPSSISNSSESPAPINSATASMSPANNTSGNPITSPHYRGVLDMSGAYSGQPTNTASTQYSGPVPHDRTPLPQT 179 (307)
T ss_pred ccccccccccccccccccCcccccccccccccccccCCCCCCcccceecccccccCCCCccccccccCCCCcCcccCCcc
Confidence 5555442 223222211 11111 1134444555 478899999999995 5999988778999999999 99999999
Q ss_pred CCCCCceeechHhhHHHHHHHHHHHHHHHhcccccCCCCccccccchhhhhccCCCCCccccCCCcccccccccCCCCC-
Q 019782 185 LAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPESKRNLTNNELD- 263 (336)
Q Consensus 185 ~~eeePvyVNaKQy~rIlrRR~~Rakle~~~kl~k~rk~YlHESRH~HAm~R~Rg~gGRFl~~~e~~~~~~~~~~~~~~- 263 (336)
+.|+|||||||||||||||||++|||||+++||+|.||||||||||+|||||+||+|||||++||.++........+..
T Consensus 180 ~~e~ePl~VNaKQY~~IlrRRq~RaKlEa~~klik~RkpYLHESRH~HAmkR~RG~GGRFln~k~~~~~ss~~~~~~~~~ 259 (307)
T KOG1561|consen 180 DSETEPLYVNAKQYHRILRRRQARAKLEATTKLIKARKPYLHESRHLHAMKRARGEGGRFLNTKEYHDDSSFIPHNPMDS 259 (307)
T ss_pred ccCCCceeEcHHHHHHHHHHHHHHhhhhhcccchhhcCccccchhhHHHhhcccCCCCCCCchhhhhhhcccCCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999966544222222111
Q ss_pred --------cchhhhcccCCCCCCccccCCccccccCCcccccC-CCc
Q 019782 264 --------MSESEAHRENYKDGGSTTSCSDITSASNSEDIFQQ-PEF 301 (336)
Q Consensus 264 --------~s~~~~~~~~~~~~~s~~s~Sdvts~sn~~~~f~q-~~f 301 (336)
++..++.........++++++|++.+.+..++|.+ .+|
T Consensus 260 ~~s~~~~~ps~~~~~~~~~~~~~s~~~~~s~~~~~~~~~~~g~~~~~ 306 (307)
T KOG1561|consen 260 IDSSDVNDPTATGLPVDIDPLNLTGNTQDSMIIGQQTYPSHGSSGTM 306 (307)
T ss_pred cCcccccCCcccccccCCCCCCCCCCcccceeeccccccccccccCC
Confidence 22222222223345666788888888888888875 554
No 2
>smart00521 CBF CCAAT-Binding transcription Factor.
Probab=100.00 E-value=2.6e-37 Score=236.00 Aligned_cols=61 Identities=82% Similarity=1.205 Sum_probs=59.6
Q ss_pred CCCceeechHhhHHHHHHHHHHHHHHHhcccccCCCCccccccchhhhhccCCCCCccccC
Q 019782 187 EDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNT 247 (336)
Q Consensus 187 eeePvyVNaKQy~rIlrRR~~Rakle~~~kl~k~rk~YlHESRH~HAm~R~Rg~gGRFl~~ 247 (336)
+|+|||||||||++|||||++|||+|+++||++.||||||||||+|||+|+||+||||||+
T Consensus 2 ~~~piyVNaKQy~~IlrRR~~Rak~e~~~kl~~~rkpYlhESRH~HAm~R~Rg~gGRFl~~ 62 (62)
T smart00521 2 EEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLNT 62 (62)
T ss_pred CCcceeEcHHHHHHHHHHHHHHHHHHHhcchhhccCCcccchhHHHHHccCcCCCCCCCCC
Confidence 6799999999999999999999999999999999999999999999999999999999985
No 3
>PF02045 CBFB_NFYA: CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B; InterPro: IPR001289 The CCAAT-binding factor (CBFB/NF-YA) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin []. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding []. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The B subunit contains a region of similarity with the yeast protein HAP2 []. For the B subunit it has been suggested that the N-terminal portion of the conserved region is involved in subunit interaction and the C-terminal region involved in DNA-binding [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=4.9e-35 Score=221.26 Aligned_cols=57 Identities=79% Similarity=1.200 Sum_probs=56.2
Q ss_pred CCceeechHhhHHHHHHHHHHHHHHHhccc-ccCCCCccccccchhhhhccCCCCCcc
Q 019782 188 DEPIYVNAKQYRAILRRRQYRAKLEAQNKL-VKGRKPYLHESRHAHAMNRARGSGGRF 244 (336)
Q Consensus 188 eePvyVNaKQy~rIlrRR~~Rakle~~~kl-~k~rk~YlHESRH~HAm~R~Rg~gGRF 244 (336)
|+|||||||||++|||||++|||||+++|| ++.||||||||||+|||+|+||+||||
T Consensus 1 ~~piyVNaKQY~rIlrRR~~Rakle~~~k~~~~~rk~YlheSRH~HA~~R~Rg~gGRF 58 (58)
T PF02045_consen 1 EEPIYVNAKQYHRILRRRQARAKLEAEGKLSPKKRKPYLHESRHKHAMRRPRGPGGRF 58 (58)
T ss_pred CCCeeECHHHHHHHHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHcCccCCCCCC
Confidence 599999999999999999999999999999 999999999999999999999999999
No 4
>COG5224 HAP2 CCAAT-binding factor, subunit B [Transcription]
Probab=99.83 E-value=1.7e-21 Score=179.48 Aligned_cols=68 Identities=43% Similarity=0.572 Sum_probs=62.4
Q ss_pred CCceeechHhhHHHHHHHHHHHHHHHhcccccCCCCccccccchhhhhccCCCCCccccCCCcccccccc
Q 019782 188 DEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPESKRNL 257 (336)
Q Consensus 188 eePvyVNaKQy~rIlrRR~~Rakle~~~kl~k~rk~YlHESRH~HAm~R~Rg~gGRFl~~~e~~~~~~~~ 257 (336)
.+|.|||||||++|+|||-+|++|+.. +.-.|..|||||||+|||+|+|+++||||+++|+++++.+.
T Consensus 158 fqp~Yvnakq~n~i~kr~~~r~~ld~~--~~~~r~~ylHesrhkham~r~r~ptgrfLtasEi~~ln~tG 225 (248)
T COG5224 158 FQPDYVNAKQGNEISKRPGLRVYLDDS--VSAGRAFYLHESRHKHAMLRVRDPTGRFLTASEIDPLNLTG 225 (248)
T ss_pred cCcchhhhhhhhHHhcchhHHHHHHHH--hhhhhhhccccchhhhhhhcccCCCcceecHHhhhhhhhcC
Confidence 589999999999999999999999985 55667779999999999999999999999999999999653
No 5
>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction. The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding
Probab=72.85 E-value=3.3 Score=30.70 Aligned_cols=27 Identities=41% Similarity=0.470 Sum_probs=23.3
Q ss_pred CCccccccchhhhhccCCCCCccccCCC
Q 019782 222 KPYLHESRHAHAMNRARGSGGRFLNTKK 249 (336)
Q Consensus 222 k~YlHESRH~HAm~R~Rg~gGRFl~~~e 249 (336)
|.-.+++|..=|..|+|-. |||++.+|
T Consensus 19 kkirY~~Rk~~A~~R~Rvk-GRFvk~~e 45 (45)
T PF06203_consen 19 KKIRYESRKAVADKRPRVK-GRFVKKSE 45 (45)
T ss_pred ccCCcchHHHHHhhCCccC-CcccCCCC
Confidence 4567899999999999975 99998775
No 6
>KOG1561 consensus CCAAT-binding factor, subunit B (HAP2) [Transcription]
Probab=69.05 E-value=3.1 Score=41.03 Aligned_cols=44 Identities=52% Similarity=0.885 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhcccccCCCCccccccchhhhhccCCCCCccccCCC
Q 019782 201 ILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKK 249 (336)
Q Consensus 201 IlrRR~~Rakle~~~kl~k~rk~YlHESRH~HAm~R~Rg~gGRFl~~~e 249 (336)
+++++..+++.+.. -.....+||++|+.+.|.+ +.+++|++..+
T Consensus 14 ~~~~~~~~q~~~~~-~~~~~~~p~~~~s~~~~q~----~~s~~~~s~~g 57 (307)
T KOG1561|consen 14 ILKRREARQKPEER-GVQTTKKPYLHESGHKHQM----GPGGRFLSADG 57 (307)
T ss_pred cccccccccccccc-ccccccccccCcccccccc----cccccccCccc
Confidence 88888888888755 4678899999999999999 88999998443
No 7
>PF15046 DUF4532: Protein of unknown function (DUF4532)
Probab=20.43 E-value=2.2e+02 Score=28.44 Aligned_cols=50 Identities=28% Similarity=0.510 Sum_probs=32.8
Q ss_pred CCCCceeechHhhHHHHHHHHHH------HHHHHhcccc-----------cCCCCccccccchhhhhccCCCCCcccc
Q 019782 186 AEDEPIYVNAKQYRAILRRRQYR------AKLEAQNKLV-----------KGRKPYLHESRHAHAMNRARGSGGRFLN 246 (336)
Q Consensus 186 ~eeePvyVNaKQy~rIlrRR~~R------akle~~~kl~-----------k~rk~YlHESRH~HAm~R~Rg~gGRFl~ 246 (336)
....||||++++=+.++.|=++. .||..|.|.+ +.=|+| ||+. .||||..
T Consensus 130 I~~~pif~D~~rK~qvI~rt~KELkE~~kLKLRSe~RvPPlD~~GNIlPP~nFkky----~h~s-------aggr~~p 196 (279)
T PF15046_consen 130 ISCTPIFVDPNRKNQVILRTVKELKEFEKLKLRSEARVPPLDAQGNILPPENFKKY----RHIS-------AGGRFEP 196 (279)
T ss_pred hhcccceechhhhhHHHHHHHHHHhhhHhhhhhhhccCCCcCCCCCCcCchhhccc----cccc-------CCceecC
Confidence 45799999999999888775543 3444444433 233667 4444 3999965
No 8
>PF12254 DNA_pol_alpha_N: DNA polymerase alpha subunit p180 N terminal; InterPro: IPR024647 This entry represents the N-terminal domain of DNA polymerase alpha catalytic subunit (the DNA polymerase alpha complex is composed of four subunits). This domain is approximately 70 amino acids in length and it contains a specific labile site [].
Probab=19.96 E-value=85 Score=24.91 Aligned_cols=22 Identities=41% Similarity=0.833 Sum_probs=18.4
Q ss_pred CCCCcee--echHhhHHHHHHHHH
Q 019782 186 AEDEPIY--VNAKQYRAILRRRQY 207 (336)
Q Consensus 186 ~eeePvy--VNaKQy~rIlrRR~~ 207 (336)
.++++|| |..++|..|.+.|..
T Consensus 21 ~e~~~IYdeVdE~eY~~~v~~R~~ 44 (67)
T PF12254_consen 21 EEEEDIYDEVDEEEYRKLVRKRLQ 44 (67)
T ss_pred hcccccceeeCHHHHHHHHHHHHh
Confidence 3668898 999999999988854
No 9
>PF10200 Ndufs5: NADH:ubiquinone oxidoreductase, NDUFS5-15kDa; InterPro: IPR019342 Proteins in this entry form part of the NADH:ubiquinone oxidoreductase complex I. Complex I is the first multisubunit inner membrane protein complex of the mitochondrial electron transport chain and it transfers two electrons from NADH to ubiquinone. The mammalian complex I is composed of 45 different subunits. The proteins in this entry represent a component of the iron-sulphur (IP) fragment of the enzyme, that is not involved in catalysis. These proteins carry four highly conserved cysteine residues, but these do not appear to be in a configuration which would favour metal binding, so the exact function of the protein is uncertain [].
Probab=19.92 E-value=1.2e+02 Score=25.80 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=21.3
Q ss_pred chHhhHHHHHHHHHHHHHHHhcccc
Q 019782 194 NAKQYRAILRRRQYRAKLEAQNKLV 218 (336)
Q Consensus 194 NaKQy~rIlrRR~~Rakle~~~kl~ 218 (336)
--||+.|...-|+.|.|+-.+||..
T Consensus 69 ~~Ke~~R~~aI~kqR~K~~keGk~t 93 (96)
T PF10200_consen 69 HTKEMKRMRAIRKQRDKQIKEGKYT 93 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHccCCC
Confidence 3689999999999999999998854
No 10
>PF11112 PyocinActivator: Pyocin activator protein PrtN
Probab=17.97 E-value=1.5e+02 Score=23.84 Aligned_cols=35 Identities=26% Similarity=0.569 Sum_probs=28.3
Q ss_pred CCccCCCc---CCCCCCceeechHhhHHHHHHHHHHHH
Q 019782 176 PARVPLPL---ELAEDEPIYVNAKQYRAILRRRQYRAK 210 (336)
Q Consensus 176 ~~r~plP~---~~~eeePvyVNaKQy~rIlrRR~~Rak 210 (336)
.+++|||+ +..+..|-+|.-...-..|-+|...||
T Consensus 39 ~g~lplPv~rl~~SqKs~~~V~v~dLA~yiD~~~~~A~ 76 (76)
T PF11112_consen 39 AGELPLPVFRLDDSQKSPKFVHVQDLAAYIDKRREEAK 76 (76)
T ss_pred CCCCCCceeecCCcccCCceeeHHHHHHHHHHHHHhcC
Confidence 36899994 445678999999999999988877664
Done!