Query 019782
Match_columns 336
No_of_seqs 152 out of 224
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 07:00:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019782.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019782hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g92_A HAPB protein; transcrip 100.0 1.3E-37 4.5E-42 237.9 4.6 62 188-249 2-64 (64)
2 3hde_A Lysozyme; antimicrobial 9.6 1.3E+02 0.0044 25.5 1.9 24 190-213 138-161 (165)
3 1xju_A Lysozyme; secreted inac 9.2 1.4E+02 0.0047 25.2 1.9 26 190-215 128-153 (163)
4 2anv_A Lysozyme; direct method 7.9 95 0.0033 25.5 0.4 21 190-211 123-143 (146)
5 1b9w_A Protein (merozoite surf 7.8 68 0.0023 26.2 -0.6 19 139-157 70-89 (95)
6 3eoi_A PILM; structural genomi 7.4 1.5E+02 0.0051 24.7 1.3 17 178-194 108-124 (124)
7 1xjt_A Lysozyme; open conforma 7.3 1.8E+02 0.0062 25.2 1.9 26 190-215 156-181 (191)
8 1qfq_B N36, 36-MER N-terminal 6.8 1.9E+02 0.0066 19.6 1.4 13 202-214 4-16 (35)
9 3gxv_A Replicative DNA helicas 5.8 3.3E+02 0.011 21.6 2.5 25 189-213 88-112 (123)
10 2k2w_A Recombination and DNA r 5.0 1.7E+02 0.0058 24.6 0.3 15 186-200 15-29 (118)
No 1
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=100.00 E-value=1.3e-37 Score=237.93 Aligned_cols=62 Identities=65% Similarity=1.077 Sum_probs=58.8
Q ss_pred CCceeechHhhHHHHHHHHHHHHHHHhcccc-cCCCCccccccchhhhhccCCCCCccccCCC
Q 019782 188 DEPIYVNAKQYRAILRRRQYRAKLEAQNKLV-KGRKPYLHESRHAHAMNRARGSGGRFLNTKK 249 (336)
Q Consensus 188 eePvyVNaKQy~rIlrRR~~Rakle~~~kl~-k~rk~YlHESRH~HAm~R~Rg~gGRFl~~~e 249 (336)
|||||||||||++|||||++|||||++++|+ +.||||||||||+|||+|+||+||||||++|
T Consensus 2 eePiyVNaKQy~~IlrRR~~Rakle~~~kl~~~~rk~YlhESRH~HAm~R~Rg~gGRFl~~~e 64 (64)
T 4g92_A 2 ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLTADE 64 (64)
T ss_dssp -CCSCCCTTTHHHHHHHHHHHHHHHHHTTCCSSSCCSCSCHHHHHHHHHSCBCTTSCBCCCC-
T ss_pred CCCeeECHHHHHHHHHHHHHHHHHHHhCCcccccccCcchhHHHHHHhcCCcCCCCccccCCC
Confidence 5999999999999999999999999999995 8899999999999999999999999999986
No 2
>3hde_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase, late protein; 1.95A {Enterobacteria phage P21}
Probab=9.63 E-value=1.3e+02 Score=25.50 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=19.3
Q ss_pred ceeechHhhHHHHHHHHHHHHHHH
Q 019782 190 PIYVNAKQYRAILRRRQYRAKLEA 213 (336)
Q Consensus 190 PvyVNaKQy~rIlrRR~~Rakle~ 213 (336)
-+|++-|...++.+||++..+|=.
T Consensus 138 W~~agGk~~~GLv~RR~~E~~l~l 161 (165)
T 3hde_A 138 WTYAGGKQWKGLMTRREIEREICL 161 (165)
T ss_dssp CCEETTEECHHHHHHHHHHHHHHT
T ss_pred HhhcCCEEchhHHHHHHHHHHHHH
Confidence 456677889999999999887743
No 3
>1xju_A Lysozyme; secreted inactive conformation, hydrolase; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=9.18 E-value=1.4e+02 Score=25.16 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=20.8
Q ss_pred ceeechHhhHHHHHHHHHHHHHHHhc
Q 019782 190 PIYVNAKQYRAILRRRQYRAKLEAQN 215 (336)
Q Consensus 190 PvyVNaKQy~rIlrRR~~Rakle~~~ 215 (336)
-+|++-|...++.+||++.+.|=..+
T Consensus 128 W~~~gGk~~~GL~~RR~~E~~l~~~~ 153 (163)
T 1xju_A 128 FVNSNGVPLRGLKIRREKERQLCLTG 153 (163)
T ss_dssp CCEETTEECHHHHHHHHHHHHHHHTT
T ss_pred HhhcCCEEehhhHHHHHHHHHHHhCC
Confidence 45667788999999999998886544
No 4
>2anv_A Lysozyme; direct methods, lanthinide binding sites, hydrolase; 1.04A {Enterobacteria phage P22} PDB: 2anx_A
Probab=7.92 E-value=95 Score=25.47 Aligned_cols=21 Identities=19% Similarity=0.091 Sum_probs=16.4
Q ss_pred ceeechHhhHHHHHHHHHHHHH
Q 019782 190 PIYVNAKQYRAILRRRQYRAKL 211 (336)
Q Consensus 190 PvyVNaKQy~rIlrRR~~Rakl 211 (336)
-+|++-| ..++.+||++.+.|
T Consensus 123 w~~~~Gk-~~GL~~RR~~E~~l 143 (146)
T 2anv_A 123 WKKAGKD-PDILLPRRRRERAL 143 (146)
T ss_dssp CCCBTTB-TTTTHHHHHHHHHH
T ss_pred HHHcCCe-eHHHHHHHHHHHHH
Confidence 3556667 88999999988776
No 5
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria vaccine, surface antigen; 1.80A {Plasmodium cynomolgi} SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Probab=7.76 E-value=68 Score=26.23 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=15.9
Q ss_pred cccc-cCCCCCcccCcccCC
Q 019782 139 VAPF-QLHYAEPYFSGLLSP 157 (336)
Q Consensus 139 ~a~~-~ypy~dpyygg~~aa 157 (336)
|.|+ ..||..|||.|+|-.
T Consensus 70 IvC~C~~~~~~~~~~gvf~~ 89 (95)
T 1b9w_A 70 IVCKCTKEGSEPLFEGVFCS 89 (95)
T ss_dssp EEEECCSTTEEEEGGGTEEE
T ss_pred EEEECCCCCCCcceeeEEec
Confidence 6676 789999999999865
No 6
>3eoi_A PILM; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.52A {Escherichia coli}
Probab=7.43 E-value=1.5e+02 Score=24.68 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=15.4
Q ss_pred ccCCCcCCCCCCceeec
Q 019782 178 RVPLPLELAEDEPIYVN 194 (336)
Q Consensus 178 r~plP~~~~eeePvyVN 194 (336)
.++||.-+++.-.||||
T Consensus 108 ~i~lPa~Ip~GsiVy~n 124 (124)
T 3eoi_A 108 SITLPAVIPDQVIIWMN 124 (124)
T ss_dssp CCCCCTTSCSSEEEEEC
T ss_pred cCcCCCcCCCCCEEeeC
Confidence 48999999999999998
No 7
>1xjt_A Lysozyme; open conformation, hydrolase; HET: CIT; 1.75A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=7.34 E-value=1.8e+02 Score=25.24 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=20.7
Q ss_pred ceeechHhhHHHHHHHHHHHHHHHhc
Q 019782 190 PIYVNAKQYRAILRRRQYRAKLEAQN 215 (336)
Q Consensus 190 PvyVNaKQy~rIlrRR~~Rakle~~~ 215 (336)
-+|++-|...++.+||++.+.|=..+
T Consensus 156 W~~~gGk~l~GLv~RR~~E~~l~~~~ 181 (191)
T 1xjt_A 156 FVNSNGVPLRGLKIRREKERQLCLTG 181 (191)
T ss_dssp CCEETTEECHHHHHHHHHHHHHHHBT
T ss_pred HhhcCCEEehhHHHHHHHHHHHHhCC
Confidence 45667778999999999998886544
No 8
>1qfq_B N36, 36-MER N-terminal peptide of the N protein; bacteriophage lambda, antitermination, peptide-RNA-complex; NMR {Enterobacteria phage lambda} SCOP: j.9.5.1
Probab=6.80 E-value=1.9e+02 Score=19.61 Aligned_cols=13 Identities=54% Similarity=0.659 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHh
Q 019782 202 LRRRQYRAKLEAQ 214 (336)
Q Consensus 202 lrRR~~Rakle~~ 214 (336)
-|||++||...++
T Consensus 4 ~rrrerra~kqa~ 16 (35)
T 1qfq_B 4 TRRRERRAEKQAQ 16 (35)
T ss_dssp HHHHHHTHHHHHH
T ss_pred hHHHHHHHHHHhh
Confidence 3677777655444
No 9
>3gxv_A Replicative DNA helicase; hexameric helicase, primase, replication, ATP-binding, autocatalytic cleavage, DNA replication; 2.20A {Helicobacter pylori} PDB: 3gxv_D 3gxv_C
Probab=5.81 E-value=3.3e+02 Score=21.62 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=20.3
Q ss_pred CceeechHhhHHHHHHHHHHHHHHH
Q 019782 189 EPIYVNAKQYRAILRRRQYRAKLEA 213 (336)
Q Consensus 189 ePvyVNaKQy~rIlrRR~~Rakle~ 213 (336)
-|--.|.+.|-+|+|.+..|.++-.
T Consensus 88 ~ps~ani~~Ya~iV~e~s~~R~li~ 112 (123)
T 3gxv_A 88 ASPIDNIEAYVEEIKNASIKRKLFG 112 (123)
T ss_dssp SCCCSCTHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556799999999999988887743
No 10
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=5.05 E-value=1.7e+02 Score=24.55 Aligned_cols=15 Identities=33% Similarity=0.645 Sum_probs=11.5
Q ss_pred CCCCceeechHhhHH
Q 019782 186 AEDEPIYVNAKQYRA 200 (336)
Q Consensus 186 ~eeePvyVNaKQy~r 200 (336)
....=||.|+|||.+
T Consensus 15 ~GKtFvFLn~KQ~kk 29 (118)
T 2k2w_A 15 KDKVFLFLNAKQYKK 29 (118)
T ss_dssp TTCEEEESCSSTHHH
T ss_pred cCCEEEEeCHHHHHH
Confidence 344568999999975
Done!